##fileformat=VCFv4.2
##FILTER=<ID=GOF,Description="Variant fails goodness-of-fit test.">
##FILTER=<ID=HapScore,Description="Too many haplotypes are supported by the data in this region.">
##FILTER=<ID=MQ,Description="Root-mean-square mapping quality across calling region is low.">
##FILTER=<ID=Q20,Description="Variant quality is below 20.">
##FILTER=<ID=QD,Description="Variants fail quality/depth filter.">
##FILTER=<ID=QualDepth,Description="Variant quality/Read depth ratio is low.">
##FILTER=<ID=REFCALL,Description="This line represents a homozygous reference call">
##FILTER=<ID=SC,Description="Variants fail sequence-context filter. Surrounding sequence is low-complexity">
##FILTER=<ID=alleleBias,Description="Variant frequency is lower than expected for het">
##FILTER=<ID=badReads,Description="Variant supported only by reads with low quality bases close to variant position, and not present on both strands.">
##FILTER=<ID=hp10,Description="Flanking sequence contains homopolymer of length 10 or greater">
##FILTER=<ID=strandBias,Description="Variant fails strand-bias filter">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=A,Type=Float,Description="Allelic frequency for the alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.8-1-0-gf15c1c3ef,Date="Thu Jul 20 18:07:33 UTC 2023",Epoch=1689876453412,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data/MoCha/patidarr/ref/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=10000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=true use_jdk_inflater=true disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=2 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=HC source=/lscratch/4847560//HC.vcf)]), (RodBindingCollection [(RodBinding name=Platypus source=/lscratch/4847560//PL.vcf)])] out=/vf/users/MoCha/processedDATA/176247/20170910/176247~063-R~J2-PDC~WES/calls/176247~063-R~J2-PDC~WES.merged.vcf genotypemergeoption=PRIORITIZE filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=HC,Platypus printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=ALERT,Number=0,Type=Flag,Description="Variant is adjacent to other variants, but case was too complex for joinAdjacentSNPs to handle. Please review.">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BRF,Number=1,Type=Float,Description="Fraction of reads around this variant that failed filters">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Combined depth across samples">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FR,Number=.,Type=Float,Description="Estimated population frequency of variant">
##INFO=<ID=FS,Number=.,Type=Float,Description="Fisher's exact test for strand bias (Phred scale)">
##INFO=<ID=HP,Number=1,Type=Integer,Description="Homopolymer run length around variant locus">
##INFO=<ID=HapScore,Number=.,Type=Integer,Description="Haplotype score measuring the number of haplotypes the variant is segregating into in a window">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=JOINED,Number=0,Type=Flag,Description="Variant is the result of joining adjacent SNPs/MNPs. Please use caution when interpreting sample-specific values.">
##INFO=<ID=MGOF,Number=.,Type=Integer,Description="Worst goodness-of-fit value reported across all samples">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts, for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=MMLQ,Number=1,Type=Float,Description="Median minimum base quality for bases around variant">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=NF,Number=.,Type=Integer,Description="Total number of forward reads containing this variant">
##INFO=<ID=NR,Number=.,Type=Integer,Description="Total number of reverse reads containing this variant">
##INFO=<ID=PP,Number=.,Type=Float,Description="Posterior probability (phred scaled) that this variant segregates">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant-quality/read-depth for this variant">
##INFO=<ID=ReadPosRankSum,Number=.,Type=Float,Description="Mann-Whitney Rank sum test for difference between in positions of variants in reads from ref and alt">
##INFO=<ID=SC,Number=1,Type=String,Description="Genomic sequence 10 bases either side of variant position">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=START,Number=.,Type=Integer,Description="Start position of reference call block">
##INFO=<ID=SbPval,Number=.,Type=Float,Description="Binomial P-value for strand bias test">
##INFO=<ID=Size,Number=.,Type=Integer,Description="Size of reference call block">
##INFO=<ID=Source,Number=.,Type=String,Description="Was this variant suggested by Playtypus, Assembler, or from a VCF?">
##INFO=<ID=TC,Number=1,Type=Integer,Description="Total coverage at this locus">
##INFO=<ID=TCF,Number=1,Type=Integer,Description="Total forward strand coverage at this locus">
##INFO=<ID=TCR,Number=1,Type=Integer,Description="Total reverse strand coverage at this locus">
##INFO=<ID=TR,Number=.,Type=Integer,Description="Total number of reads containing this variant">
##INFO=<ID=WE,Number=1,Type=Integer,Description="End position of calling window">
##INFO=<ID=WS,Number=1,Type=Integer,Description="Starting position of calling window">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##SentieonCommandLine.Haplotyper=<ID=Haplotyper,Version="sentieon-genomics-201711",Date="2023-05-25T19:07:24Z",CommandLine="/data/MoCha/patidarr/sentieon/sentieon-genomics-201711/libexec/driver --temp_dir /lscratch/66888756// -t 26 -r /data/MoCha/patidarr/ref/ucsc.hg19.fasta -i 176247/20170910/176247~063-R~J2-PDC~WES/176247~063-R~J2-PDC~WES.bwa.final.bam --interval /data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed --algo Haplotyper -d /data/MoCha/patidarr/ref/dbsnp_138.hg19.vcf --min_base_qual 20 --min_map_qual 30 /lscratch/66888756//176247~063-R~J2-PDC~WES.HC_DNASeq.raw.vcf">
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
##contig=<ID=chr3,length=198022430,assembly=hg19>
##contig=<ID=chr4,length=191154276,assembly=hg19>
##contig=<ID=chr5,length=180915260,assembly=hg19>
##contig=<ID=chr6,length=171115067,assembly=hg19>
##contig=<ID=chr7,length=159138663,assembly=hg19>
##contig=<ID=chr8,length=146364022,assembly=hg19>
##contig=<ID=chr9,length=141213431,assembly=hg19>
##contig=<ID=chr10,length=135534747,assembly=hg19>
##contig=<ID=chr11,length=135006516,assembly=hg19>
##contig=<ID=chr12,length=133851895,assembly=hg19>
##contig=<ID=chr13,length=115169878,assembly=hg19>
##contig=<ID=chr14,length=107349540,assembly=hg19>
##contig=<ID=chr15,length=102531392,assembly=hg19>
##contig=<ID=chr16,length=90354753,assembly=hg19>
##contig=<ID=chr17,length=81195210,assembly=hg19>
##contig=<ID=chr18,length=78077248,assembly=hg19>
##contig=<ID=chr19,length=59128983,assembly=hg19>
##contig=<ID=chr20,length=63025520,assembly=hg19>
##contig=<ID=chr21,length=48129895,assembly=hg19>
##contig=<ID=chr22,length=51304566,assembly=hg19>
##contig=<ID=chrX,length=155270560,assembly=hg19>
##contig=<ID=chrY,length=59373566,assembly=hg19>
##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
##contig=<ID=chr4_ctg9_hap1,length=590426,assembly=hg19>
##contig=<ID=chr4_gl000193_random,length=189789,assembly=hg19>
##contig=<ID=chr4_gl000194_random,length=191469,assembly=hg19>
##contig=<ID=chr6_apd_hap1,length=4622290,assembly=hg19>
##contig=<ID=chr6_cox_hap2,length=4795371,assembly=hg19>
##contig=<ID=chr6_dbb_hap3,length=4610396,assembly=hg19>
##contig=<ID=chr6_mann_hap4,length=4683263,assembly=hg19>
##contig=<ID=chr6_mcf_hap5,length=4833398,assembly=hg19>
##contig=<ID=chr6_qbl_hap6,length=4611984,assembly=hg19>
##contig=<ID=chr6_ssto_hap7,length=4928567,assembly=hg19>
##contig=<ID=chr7_gl000195_random,length=182896,assembly=hg19>
##contig=<ID=chr8_gl000196_random,length=38914,assembly=hg19>
##contig=<ID=chr8_gl000197_random,length=37175,assembly=hg19>
##contig=<ID=chr9_gl000198_random,length=90085,assembly=hg19>
##contig=<ID=chr9_gl000199_random,length=169874,assembly=hg19>
##contig=<ID=chr9_gl000200_random,length=187035,assembly=hg19>
##contig=<ID=chr9_gl000201_random,length=36148,assembly=hg19>
##contig=<ID=chr11_gl000202_random,length=40103,assembly=hg19>
##contig=<ID=chr17_ctg5_hap1,length=1680828,assembly=hg19>
##contig=<ID=chr17_gl000203_random,length=37498,assembly=hg19>
##contig=<ID=chr17_gl000204_random,length=81310,assembly=hg19>
##contig=<ID=chr17_gl000205_random,length=174588,assembly=hg19>
##contig=<ID=chr17_gl000206_random,length=41001,assembly=hg19>
##contig=<ID=chr18_gl000207_random,length=4262,assembly=hg19>
##contig=<ID=chr19_gl000208_random,length=92689,assembly=hg19>
##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
##contig=<ID=chr21_gl000210_random,length=27682,assembly=hg19>
##contig=<ID=chrUn_gl000211,length=166566,assembly=hg19>
##contig=<ID=chrUn_gl000212,length=186858,assembly=hg19>
##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
##contig=<ID=chrUn_gl000214,length=137718,assembly=hg19>
##contig=<ID=chrUn_gl000215,length=172545,assembly=hg19>
##contig=<ID=chrUn_gl000216,length=172294,assembly=hg19>
##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
##contig=<ID=chrUn_gl000219,length=179198,assembly=hg19>
##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
##contig=<ID=chrUn_gl000221,length=155397,assembly=hg19>
##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
##contig=<ID=chrUn_gl000226,length=15008,assembly=hg19>
##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
##contig=<ID=chrUn_gl000228,length=129120,assembly=hg19>
##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##fileDate=2023-05-25
##joinAdjacentSNPs_command=/data/MoCha/patidarr/ngs_pipeline/scripts/joinAdjacentSNPs_up.py -v 176247/20170910/176247~063-R~J2-PDC~WES/calls/176247~063-R~J2-PDC~WES.HC_DNASeq.raw.vcf -o /lscratch/4847560//HC.vcf.tmp 1 176247/20170910/176247~063-R~J2-PDC~WES/176247~063-R~J2-PDC~WES.bwa.final.bam /data/MoCha/patidarr/ref/ucsc.hg19.2bit
##platypusOptions={'assemblyRegionSize': 1500, 'trimReadFlank': 0, 'assembleBadReads': 1, 'bamFiles': ['176247/20170910/176247~063-R~J2-PDC~WES/176247~063-R~J2-PDC~WES.bam'], 'minVarDist': 9, 'trimSoftClipped': 1, 'minReads': 2, 'qualBinSize': 1, 'refFile': '/data/MoCha/patidarr/ref/ucsc.hg19.fasta', 'maxHaplotypes': 50, 'filterVarsByCoverage': 1, 'maxSize': 1500, 'originalMaxHaplotypes': 50, 'skipDifficultWindows': 0, 'parseNCBI': 0, 'skipRegionsFile': None, 'noCycles': 0, 'trimAdapter': 1, 'minPosterior': 5, 'assembleAll': 1, 'trimOverlapping': 1, 'filterDuplicates': 1, 'abThreshold': 0.001, 'minFlank': 10, 'bufferSize': 1000000, 'fileCaching': 0, 'useEMLikelihoods': 0, 'coverageSamplingLevel': 30, 'calculateFlankScore': 0, 'logFileName': 'log/platypus.176247.20170910.176247~063-R~J2-PDC~WES', 'nCPU': 32, 'filterReadsWithUnmappedMates': 1, 'qdThreshold': 10, 'maxVariants': 8, 'scThreshold': 0.95, 'filterReadsWithDistantMates': 1, 'maxReads': 100000000.0, 'badReadsWindow': 11, 'genIndels': 1, 'largeWindows': 0, 'minMapQual': 20, 'maxVarDist': 15, 'maxGOF': 30, 'rlen': 150, 'minGoodQualBases': 20, 'refCallBlockSize': 1000, 'countOnlyExactIndelMatches': 0, 'longHaps': 0, 'HLATyping': 0, 'filterReadPairsWithSmallInserts': 1, 'minBaseQual': 20, 'getVariantsFromBAMs': 1, 'genSNPs': 1, 'assemble': 0, 'assemblerKmerSize': 15, 'minVarFreq': 0.05, 'alignScoreFile': '', 'verbosity': 2, 'sourceFile': None, 'compressReads': 0, 'rmsmqThreshold': 40, 'filteredReadsFrac': 0.7, 'outputRefCalls': 0, 'badReadsThreshold': 15, 'hapScoreThreshold': 4, 'regions': ['/data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed'], 'sbThreshold': 0.001, 'output': '176247/20170910/176247~063-R~J2-PDC~WES/calls/176247~063-R~J2-PDC~WES.Platypus.raw.vcf', 'assembleBrokenPairs': 0, 'mergeClusteredVariants': 1, 'maxGenotypes': 1275, 'nInd': 1}
##reference=file:///data/MoCha/patidarr/ref/ucsc.hg19.fasta
##source=Platypus_Version_0.8.1
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	176247~063-R~J2-PDC~WES
chr1	69511	rs75062661	A	G	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	752894	rs3131971	T	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.69;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	762061	rs191348624	T	A	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:58,108:0.65:166
chr1	762273	rs3115849	G	A	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	762409	.	G	C	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.326;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.500;MQ=45.00;MQRankSum=-1.057;QD=18.22;ReadPosRankSum=-1.189;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr1	762589	rs71507461	G	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.92;QD=42.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	762592	rs71507462	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.92;QD=42.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	762601	rs71507463	T	C	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.30;QD=41.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	762632	rs61768173	T	A	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	792263	rs1044922	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.46;QD=24.69;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	792480	rs2905036	C	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	866319	rs9988021	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	876499	rs4372192	A	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	877715	rs6605066	C	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	879676	rs6605067	G	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	879687	rs2839	T	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	880238	rs3748592	A	G	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	880639	rs35916504	TC	T	1205.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	882033	rs2272756	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	883625	rs4970378	A	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	884091	.	C	G	2156	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=4;MGOF=9;MMLQ=28;MQ=59.86;NF=8;NR=39;PP=2156;QD=46.6121534585;SC=CACCTGGCTGCACCCTGGTCA;SbPval=0.97;Source=Platypus;TC=125;TCF=40;TCR=85;TR=47;WE=884109;WS=884081;set=Platypus	GT:AD:AF:DP	0/1:78,47:0.38:125
chr1	884091	.	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	4924.73	.	AC=2;AF=1.00;AN=2;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.78;SOR=1.299;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	884101	.	A	C	2542	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=4;HapScore=4;MGOF=9;MMLQ=27;MQ=59.84;NF=23;NR=37;PP=2542;QD=20;SC=CACCCTGGTCACCCTGGTCCT;SbPval=0.16;Source=Platypus;TC=109;TCF=32;TCR=77;TR=60;WE=884109;WS=884081;set=Platypus	GT:AD:AF:DP	1/0:49,60:0.55:109
chr1	886788	rs10465242	G	A	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	886817	rs10465241	C	T	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	887560	rs3748595	A	C	5123.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	887801	rs3828047	A	G	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	888639	rs3748596	T	C	7948.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr1	888659	rs3748597	T	C	7705.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	889158	rs13303056	GA	CC	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	889638	rs13303206	G	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	892745	rs13303227	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	894573	rs13303010	G	A	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	897325	rs4970441	G	C	11591.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	897564	rs13303229	T	C	12745.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr1	898323	rs6605071	T	C	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	899989	.	A	C	258	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=4;HapScore=4;MGOF=90;MMLQ=27;MQ=54.34;NF=5;NR=6;PP=258;QD=26.615564777;SC=CGCAGTGGGGATGTGCTGCGG;SbPval=0.63;Source=Platypus;TC=11;TCF=5;TCR=6;TR=11;WE=900017;WS=899979;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	900009	.	CG	C	281	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=7;HapScore=4;MGOF=90;MMLQ=24;MQ=52.92;NF=4;NR=3;PP=281;QD=45.1428571429;SC=GGGAGGGGGGCGCGGGTCCGC;SbPval=0.64;Source=Platypus;TC=7;TCF=4;TCR=3;TR=7;WE=900017;WS=899979;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	900285	rs4970435	CA	TG	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	900505	rs28705211	G	C	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	908823	rs28687780	G	A	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	909238	rs3829740	G	C	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	909309	rs3829738	T	C	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	909768	rs2340593	A	G	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	911916	rs74045046	C	T	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	912126	.	GC	G	688.73	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	914192	rs2340595	G	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	914876	rs13302983	T	C	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	915227	rs13303355	A	G	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	916549	rs6660139	A	G	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	916662	rs56028034	A	C	5428.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	917315	rs7547878	G	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	917492	rs28434575	C	T	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	935222	rs2298214	C	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	948846	rs3841266	T	TA	1292.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	948870	rs4615788	C	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	948921	rs15842	T	C	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	949608	rs1921	G	A	3042.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:76,128:0.63:204
chr1	949654	rs8997	A	G	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	949925	rs2799070	C	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	955597	rs115173026	G	T	157.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	957898	rs2799064	G	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr1	970549	rs70949545	TGG	T	454.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=32.48;ReadPosRankSum=-1.593;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr1	976481	.	CGGAGCGGGGCG	C	2025	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5002;HP=8;HapScore=1;MGOF=39;MMLQ=24;MQ=60.11;NF=7;NR=0;PP=2025;QD=291.142857143;SC=GCCTGGGGGGCGGAGCGGGGC;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=7;WE=976499;WS=976471;set=Platypus	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	976514	rs79290478	C	A	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=19.21;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	977330	rs2799066	T	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	977570	rs2710876	G	A	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	978603	rs35881187	CCT	C	2086.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,56:0.62:91
chr1	981087	rs3128098	A	G	8246.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	981931	rs2465128	A	G	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:1,366:1.00:367
chr1	982941	rs3128102	T	C	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	982994	rs10267	T	C	7034.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	984147	rs199866572	CAAAAAAAAAAA	C	188.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	984171	rs140904842	CAG	C	272.76	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	984302	rs9442391	T	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=-1.678;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	984494	rs60881902	GC	G	62.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	985266	rs2275813	C	T	3429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.363;QD=14.17;ReadPosRankSum=1.738;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:84,158:0.65:242
chr1	985446	rs2275812	G	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.793;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.51;ReadPosRankSum=0.751;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	985449	rs2799067	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.51;ReadPosRankSum=1.345;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	985450	.	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.750;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	985855	rs147990356	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,50:0.39:128
chr1	986443	rs2710887	C	T	7849.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	987020	.	A	G	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=3.080;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:81,36:0.31:117
chr1	987200	rs9803031	C	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	988932	rs2710871	G	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	990280	rs4275402	C	T	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=0.461;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr1	990380	rs3121561	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr1	990417	rs2465136	T	C	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	990517	rs2710872	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	1007203	rs4633229	A	G	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.924;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=1.641;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr1	1007432	rs4333796	G	A	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=-0.741;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:36,90:0.71:126
chr1	1018144	rs9442395	T	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr1	1019175	rs2298215	C	G	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.30;ReadPosRankSum=-0.430;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	1019180	rs9442396	T	C	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.94;ReadPosRankSum=-1.459;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	1021415	rs3737728	A	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr1	1026707	rs4074137	C	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr1	1026801	rs4562563	T	A	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:24,90:0.79:114
chr1	1103150	rs61768480	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr1	1132785	rs2274792	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr1	1132938	rs2274791	G	A	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:24,88:0.79:112
chr1	1132966	rs2274790	C	A	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:15,73:0.83:88
chr1	1133077	rs2274789	A	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr1	1133254	rs12026794	G	A	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.74;ReadPosRankSum=0.076;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:11,39:0.78:50
chr1	1133273	rs12031928	T	C	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr1	1147422	rs17568	C	T	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:48,96:0.67:144
chr1	1156131	rs2887286	T	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.558;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:61,30:0.33:91
chr1	1158631	rs6603781	A	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	1179593	.	G	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.373;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:111,39:0.26:150
chr1	1190523	rs1058161	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr1	1192773	.	AC	A	155.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.57;ReadPosRankSum=-1.465;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr1	1196863	rs6659787	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1216581	rs1262893	G	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	1217011	rs1262894	A	C	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.887;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:96,25:0.21:121
chr1	1217020	rs1262895	G	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-1.700;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:85,22:0.21:107
chr1	1223465	rs58081058	GC	G	167.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	1225959	rs1570867	C	G	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:88,124:0.58:212
chr1	1226348	rs586965	C	G	2939.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:22,125:0.85:147
chr1	1226757	rs6690013	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr1	1227249	rs621668	T	C	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:23,79:0.77:102
chr1	1229146	.	AG	A	85	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=4;HapScore=1;MMLQ=19;MQ=53.91;NF=4;NR=3;PP=85;QD=19.14727141;SC=CCTGCCCTGGAGGCCCCGCCC;SbPval=0.59;Source=Platypus;TC=27;TCF=16;TCR=11;TR=7;WE=1229154;WS=1229136;set=Platypus	GT:AD:AF:DP	1/0:20,7:0.26:27
chr1	1229164	.	G	T	452	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=23;MQ=57.75;NF=16;NR=8;PP=452;QD=20.2821338561;SC=CCCCTGCCCTGGAGGCCCCGC;SbPval=0.54;Source=Platypus;TC=40;TCF=27;TCR=13;TR=24;WE=1229172;WS=1229154;set=Platypus	GT:AD:AF:DP	0/1:16,24:0.60:40
chr1	1229680	rs2477781	G	T	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	1231507	rs619608	G	A	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:47,156:0.77:203
chr1	1231656	rs1749951	G	A	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:52,111:0.68:163
chr1	1233112	.	CGT	C	1164	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=4;MGOF=3;MMLQ=24;MQ=58.56;NF=7;NR=2;PP=1164;QD=131.333333333;SC=CCCGGTGGCACGTGTGTGTGT;SbPval=0.66;Source=Platypus;TC=17;TCF=13;TCR=4;TR=9;WE=1233140;WS=1233105;set=Platypus	GT:AD:AF:DP	1/0:8,9:0.53:17
chr1	1233941	rs1739855	T	C	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:31,71:0.70:102
chr1	1234762	rs143128930	AG	A	957.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=5.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=0.506;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:25,36:0.59:61
chr1	1235710	rs640712	T	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;MQ=59.86;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr1	1239339	rs11260584	T	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr1	1242707	rs2274262	A	G	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.052;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:228,85:0.27:313
chr1	1243896	.	C	T	189	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=1;HapScore=2;MGOF=59;MMLQ=23;MQ=60.0;NF=9;NR=0;PP=189;QD=24.8634680608;SC=TGGCGCGGTGCCACCGCGCAG;SbPval=1.0;Source=Platypus;TC=11;TCF=10;TCR=1;TR=9;WE=1243904;WS=1243893;set=Platypus	GT:AD:AF:DP	1/1:2,9:0.82:11
chr1	1245368	rs11590283	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:55,28:0.34:83
chr1	1246004	rs2296474	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	1247494	rs12103	T	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1249187	rs12142199	G	A	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=4.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.779;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:181,59:0.25:240
chr1	1254136	rs4970432	G	A	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	1254436	rs1886773	A	G	8291.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	1254443	rs1886772	G	A	8716.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.31;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	1254841	rs10907179	C	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	1260168	rs61766199	C	A	51.28	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1262591	rs2296472	C	T	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	1262966	rs307349	C	T	6982.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	1263144	rs307350	G	A	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	1266738	rs76755863	G	A	3707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.30;ReadPosRankSum=-0.354;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:41,90:0.69:131
chr1	1266738	.	GCT	ACA	2508	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=19;MQ=60.0;NF=48;NR=28;PP=2508;QD=20;SC=GCTGGGCCCTGCTGTCCTGGG;SbPval=0.59;Source=Platypus;TC=117;TCF=72;TCR=45;TR=76;WE=1266748;WS=1266728;set=Platypus	GT:AD:AF:DP	1/0:41,76:0.65:117
chr1	1266740	rs141430443	T	A	3707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.46;ReadPosRankSum=-1.059;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:41,94:0.70:135
chr1	1268847	rs307378	T	G	11182.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr1	1269554	rs307377	T	C	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	1269802	rs148758835	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:119,46:0.28:165
chr1	1273116	rs307371	A	G	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	1273278	rs307370	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.28;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	1275264	.	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	2124.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=32.241;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=-0.259;QD=31.25;ReadPosRankSum=3.402;SOR=5.418;set=HC	GT:AD:AF:DP	1/1:6,62:0.91:68
chr1	1275291	.	G	A	1160	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=6;HapScore=1;MGOF=26;MMLQ=28;MQ=58.93;NF=5;NR=57;PP=1160;QD=19.2705034282;SC=AGCAGCCCCCGCAGACCCACC;SbPval=0.99;Source=Platypus;TC=93;TCF=20;TCR=73;TR=62;WE=1275299;WS=1275281;set=Platypus	GT:AD:AF:DP	1/0:31,62:0.67:93
chr1	1275329	.	TA	CG	1186	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=4;HapScore=2;MGOF=30;MMLQ=24;MQ=58.73;NF=0;NR=25;PP=1186;QD=49.5787149945;SC=CAGCAGCCCCTACAGACCCAC;SbPval=1.0;Source=Platypus;TC=64;TCF=19;TCR=45;TR=25;WE=1275338;WS=1275319;set=Platypus	GT:AD:AF:DP	1/0:39,25:0.39:64
chr1	1276973	rs145370195	G	GACAC	15284.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	1277533	rs307362	T	C	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	1278237	rs307361	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	1284490	rs150789461	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1288471	rs3766183	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	1288583	rs3845295	C	G	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	1288823	rs2296471	A	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1289367	rs140777846	CTG	C	7471.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	1289911	rs4970365	G	A	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	1293764	rs34841888	G	C	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	1296691	rs2765025	C	G	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	1310074	rs2765035	C	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	1323078	rs12729599	A	G	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr1	1323143	rs35654872	CCT	C	3133.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	1323945	rs111530797	GTC	G	185.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	1334475	rs17851391	G	C	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.493;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:110,35:0.24:145
chr1	1362834	rs112393080	C	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-0.643;QD=15.04;ReadPosRankSum=0.797;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	1362848	rs12116538	A	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-0.383;QD=16.05;ReadPosRankSum=0.311;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	1362854	rs144894317	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.72;MQRankSum=-0.711;QD=11.91;ReadPosRankSum=0.282;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	1387667	rs1781144	C	G	13517.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr1	1413948	rs369198244	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.519;QD=1.49;ReadPosRankSum=0.783;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	1417696	rs819970	C	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	1418531	rs819973	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	1453304	rs141065088	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	1469289	rs28370384	G	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr1	1469546	rs3128344	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.560;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.568;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr1	1551927	rs7418389	T	C	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	1558792	rs12755088	T	C	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	1560100	rs28441650	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:61,24:0.28:85
chr1	1561907	rs200908623	TCGGGGC	T	698.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr1	1563789	rs74892851	C	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.098;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:102,23:0.18:125
chr1	1564712	rs61774907	G	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr1	1564952	rs112177324	TG	T	572.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr1	1566068	rs28730454	A	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	1571640	rs377058079	G	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.80;MQRankSum=-0.524;QD=12.15;ReadPosRankSum=-1.036;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	1572939	rs28688376	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:73,22:0.23:95
chr1	1575616	rs80012316	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	1580738	rs149767621	T	A	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=5.755;MLEAC=1;MLEAF=0.500;MQ=47.71;MQRankSum=-2.793;QD=10.92;ReadPosRankSum=-1.398;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:77,96:0.55:173
chr1	1581558	rs117719933	C	T	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.55;QD=30.75;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	1581586	rs61774914	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.44;QD=31.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	1581713	rs76922129	A	C	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:37,78:0.68:115
chr1	1581759	rs61774915	G	A	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.932;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-7.395;QD=2.62;ReadPosRankSum=-4.723;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:179,47:0.21:226
chr1	1581881	rs61774916	T	C	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:142,106:0.43:248
chr1	1581926	rs61774917	G	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:86,53:0.38:139
chr1	1581958	rs200481124	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr1	1582106	rs79942991	T	C	4609.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	1582202	rs61774918	C	T	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:154,129:0.46:283
chr1	1582794	rs4648754	C	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	1582841	rs61774920	A	G	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.312;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.43;MQRankSum=-0.745;QD=28.44;ReadPosRankSum=-0.997;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	1582844	rs61774921	G	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.62;MQRankSum=-0.209;QD=29.94;ReadPosRankSum=-1.903;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	1582880	rs61774922	G	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=43.61;MQRankSum=-0.471;QD=9.96;ReadPosRankSum=0.475;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	1582961	rs61774949	G	C	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=6.816;MLEAC=1;MLEAF=0.500;MQ=47.40;MQRankSum=-0.294;QD=6.23;ReadPosRankSum=-1.175;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:64,35:0.35:99
chr1	1583003	rs72468214	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr1	1583088	.	A	G	53	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=24;MQ=47.69;NF=2;NR=5;PP=53;QD=12.5387446496;SC=GTCTTTGGCGAGATCACAGCT;SbPval=0.65;Source=Platypus;TC=24;TCF=7;TCR=17;TR=7;WE=1583096;WS=1583078;set=Platypus	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	1583276	.	TC	T	99.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	1585597	rs7531938	A	G	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:23,80:0.78:103
chr1	1585642	rs3936009	G	T	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:45,107:0.70:152
chr1	1586752	rs11486023	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	1588670	rs61774958	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr1	1588717	rs61774959	G	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.455;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-1.504;QD=3.08;ReadPosRankSum=1.394;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr1	1588737	rs61776760	C	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.792;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-0.575;QD=5.07;ReadPosRankSum=1.594;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr1	1588743	rs61776761	A	T	408.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.003;MLEAC=1;MLEAF=0.500;MQ=55.55;MQRankSum=-0.248;QD=4.35;ReadPosRankSum=1.751;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:78,16:0.17:94
chr1	1588744	rs79724854	AGCG	A	390.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.823;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-0.418;QD=4.07;ReadPosRankSum=2.138;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:81,15:0.16:96
chr1	1599812	rs12729295	C	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=43.05;MQRankSum=-2.421;QD=7.12;ReadPosRankSum=-0.961;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	1599888	rs2072923	A	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr1	1599981	rs72634822	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.845;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-2.743;QD=4.36;ReadPosRankSum=0.353;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr1	1601052	.	G	A	26	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=28;MQ=60.0;NF=3;NR=1;PP=26;QD=15.1928031368;SC=CTGAATCACCGGAGAAGGCAG;SbPval=0.63;Source=Platypus;TC=9;TCF=7;TCR=2;TR=4;WE=1601060;WS=1601048;set=Platypus	GT:AD:AF:DP	1/0:5,4:0.44:9
chr1	1602787	rs4639697	G	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	1644836	rs2179382	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr1	1644908	rs2179383	C	T	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1645050	rs77869096	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.10;QD=25.72;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	1645838	rs33938712	CA	C	970.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=35.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1646113	rs199941510	G	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=43.38;MQRankSum=-1.645;QD=10.95;ReadPosRankSum=-0.524;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	1646789	rs760927	T	C	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.61;QD=26.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1647722	rs114460890	G	T	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.762;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.866;QD=17.72;ReadPosRankSum=-0.899;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr1	1647725	rs368680882	GT	AG	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.932;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.887;QD=17.54;ReadPosRankSum=-0.955;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:42,35:0.45:77
chr1	1647729	.	CA	TG	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=2.442;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.851;QD=16.82;ReadPosRankSum=0.145;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:47,36:0.43:83
chr1	1647745	rs72634830	G	A	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.951;QD=18.66;ReadPosRankSum=-0.406;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:62,58:0.48:120
chr1	1647753	rs74045984	C	T	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.700;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.931;QD=17.75;ReadPosRankSum=0.560;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:67,60:0.47:127
chr1	1647778	rs72901773	C	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:99,94:0.49:193
chr1	1647814	rs72901775	T	C	2718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.481;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:145,135:0.48:280
chr1	1647871	rs72909014	T	C	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:182,167:0.48:349
chr1	1647893	rs144636354	C	CTTTCTT	5048.73	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:149,132:0.47:281
chr1	1647928	rs1883424	A	G	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:92,114:0.55:206
chr1	1647968	rs146207119	C	CAT	1684.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,46:0.41:111
chr1	1647971	rs77394327	G	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr1	1647983	rs74429813	T	A	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.801;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-2.481;QD=15.61;ReadPosRankSum=0.381;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:51,34:0.40:85
chr1	1647990	rs76519969	C	T	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-2.471;QD=15.20;ReadPosRankSum=-0.083;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:46,31:0.40:77
chr1	1648002	rs77107184	C	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr1	1648018	rs79409185	C	T	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.019;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=16.736;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-2.765;QD=9.04;ReadPosRankSum=1.485;SOR=3.967;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr1	1648027	rs61776857	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr1	1650657	.	C	G	359	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=2;MGOF=26;MMLQ=28;MQ=59.49;NF=20;NR=1;PP=359;QD=18.7510101213;SC=CTTTCAGCTACAGTTTGCTTT;SbPval=0.93;Source=Platypus;TC=48;TCF=42;TCR=6;TR=21;WE=1650665;WS=1650655;set=Platypus	GT:AD:AF:DP	0/1:27,21:0.44:48
chr1	1650787	rs1137003	T	C	5373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=0.570;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:178,140:0.44:318
chr1	1650797	rs1059830	A	G	5751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=-0.278;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:174,148:0.46:322
chr1	1650801	rs1137004	T	C	5621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.68;ReadPosRankSum=-0.923;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:168,150:0.47:318
chr1	1650807	rs1137005	T	C	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:158,174:0.52:332
chr1	1650832	rs72909030	A	G	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:189,169:0.47:358
chr1	1650845	rs1059831	G	A	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:177,194:0.52:371
chr1	1650920	rs36191908	G	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:191,110:0.37:301
chr1	1650938	.	CGG	C	4236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-1.777;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:146,113:0.44:259
chr1	1650942	.	A	AAG	4144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-1.508;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:145,109:0.43:254
chr1	1650960	rs72634834	G	A	3053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=-0.720;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:127,79:0.38:206
chr1	1650967	rs75384210	T	C	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=-1.095;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:116,73:0.39:189
chr1	1650996	rs74223875	T	C	1250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.084;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=6.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.911;SOR=1.381;set=HC	GT:AD:AF:DP	0/1:89,38:0.30:127
chr1	1651003	rs76941027	G	A	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=7.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.976;SOR=1.462;set=HC	GT:AD:AF:DP	0/1:70,35:0.33:105
chr1	1651054	.	CT	C	443.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	1651077	rs70937183	C	CTCGCTCTGTCACCCAGGCT	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	1653004	rs36039898	T	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	1653028	rs16825265	C	T	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	1654013	rs74045997	C	G	123.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.82;QD=30.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1654038	rs61777494	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	1654058	rs61777495	C	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.48;QD=50.06;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1654064	rs200615789	A	T	1706.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.54;QD=44.91;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1654065	rs35174499	AGCG	A	1697.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1657021	rs9439499	T	C	175.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=9.542;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-0.140;QD=19.49;ReadPosRankSum=0.589;SOR=4.398;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	1663831	rs3817856	C	T	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr1	1663851	rs2294486	G	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=1.100;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr1	1663861	rs2294487	G	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=0.964;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr1	1664019	rs2294488	T	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	1666175	rs61777509	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.221;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=6.128;MLEAC=1;MLEAF=0.500;MQ=50.71;MQRankSum=-1.788;QD=1.86;ReadPosRankSum=0.130;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr1	1666251	rs77655487	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=10.142;MLEAC=1;MLEAF=0.500;MQ=51.65;MQRankSum=-5.658;QD=1.21;ReadPosRankSum=-1.327;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr1	1666338	rs2072924	G	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.22;QD=35.89;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	1666338	.	GAACA	AAACA,AAACG	597	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=22;MQ=43.57;NF=15,8;NR=34,22;PP=166,597;QD=4.09737168464;SC=CATCCACCACGAACACCCAGC;SbPval=0.54;Source=Platypus;TC=49;TCF=15;TCR=34;TR=49,30;WE=1666350;WS=1666328;set=Platypus	GT:AF:DP	0/1:1.00:49
chr1	1666342	rs76084492	A	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=8.091;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=-2.092;QD=13.15;ReadPosRankSum=-1.315;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr1	1669646	rs201497363	ACT	A	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	1669734	rs80140081	G	T	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr1	1669748	rs115554296	A	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr1	1669964	rs369037660	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.84;MQRankSum=0.967;QD=14.13;ReadPosRankSum=0.967;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	1684347	rs150880809	C	CCCT	1480.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:102,45:0.31:147
chr1	1684472	rs7407	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.117;QD=1.42;ReadPosRankSum=-0.646;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:132,29:0.18:161
chr1	1685213	rs2072928	C	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	1685921	rs139385870	TCCCTGGGACCGAAGTCGCCCCA	T	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.279;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:96,21:0.18:117
chr1	1686040	rs4751	G	T	4787.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:98,214:0.69:312
chr1	1686943	rs2072929	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr1	1686962	rs2076327	C	T	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr1	1687625	rs34306661	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	1688192	rs2281173	A	G	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	1688469	rs4648623	C	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	1688513	rs4648624	G	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	1689762	rs2235537	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	1690126	rs79655042	A	AAC	1720.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	1690736	.	GGA	G	1840.73	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr1	1696659	rs5021859	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	1718642	rs79370402	C	A	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:37,10:0.21:47
chr1	1823922	rs6688000	A	G	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	1846582	rs2748987	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	1846765	rs2247560	G	A	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=1.632;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:54,45:0.45:99
chr1	1847856	rs2748986	G	T	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=0.442;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:95,46:0.33:141
chr1	1848109	rs2803296	G	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:88,34:0.28:122
chr1	1849529	rs28640257	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr1	1849923	rs72634869	C	A	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=2.272;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:100,42:0.30:142
chr1	1850428	rs2295363	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-1.524;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr1	1853615	rs113294876	T	TCTGA	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1854109	rs2803348	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chr1	1854321	rs2250833	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	1855450	rs28423370	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	1856098	rs752965	C	T	304.56	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	1858309	rs941530	T	C	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.722;QD=5.89;ReadPosRankSum=-1.303;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:167,85:0.34:252
chr1	1859131	rs4648734	C	T	2738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.189;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:78,129:0.62:207
chr1	1859296	rs2748984	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr1	1860087	rs2748983	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	1861582	rs2803295	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:79,36:0.31:115
chr1	1870210	rs2803323	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	1873453	rs2748981	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	1873514	rs2803326	A	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	1873525	rs2803327	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.131;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr1	1873625	rs12758705	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr1	1873697	rs2748980	G	A	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=2.233;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr1	1873697	.	GAG	AAC	404	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=5;HapScore=2;MGOF=8;MMLQ=28;MQ=60.0;NF=7;NR=7;PP=404;QD=32.6762767759;SC=CCAAGCCCCCGAGAGGTGCTC;SbPval=0.56;Source=Platypus;TC=35;TCF=17;TCR=18;TR=14;WE=1873707;WS=1873687;set=Platypus	GT:AD:AF:DP	1/0:21,14:0.40:35
chr1	1873699	rs2748979	G	C	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=2.031;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr1	1875858	rs2803336	CA	GG	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=-0.109;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:127,29:0.19:156
chr1	1878628	rs2803341	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr1	1886500	.	GCGGCTC	G	374.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.07;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	1886501	.	C	A	52	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=3;HapScore=2;MGOF=41;MMLQ=28;MQ=54.99;NF=3;NR=0;PP=52;QD=28.9237375157;SC=ACCGGAAGTGCGGCTCACACC;SbPval=1.0;Source=Platypus;TC=10;TCF=9;TCR=1;TR=3;WE=1886509;WS=1886491;set=Platypus	GT:AD:AF:DP	1/0:7,3:0.30:10
chr1	1886507	.	ACACCGGAAGTGC	A	375.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.16;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	1886519	.	C	A	279	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=0.9999;HP=3;HapScore=2;MGOF=22;MMLQ=28;MQ=56.51;NF=12;NR=3;PP=279;QD=20.9180808365;SC=ACCGGAAGTGCGGCTCACACA;SbPval=0.59;Source=Platypus;TC=15;TCF=12;TCR=3;TR=15;WE=1886527;WS=1886509;set=Platypus	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	1886756	rs142420544	G	GCTGGTGCGCGT	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=9.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.411;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr1	1886859	rs3795290	C	T	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:56,151:0.73:207
chr1	1887019	rs28548017	A	G	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr1	1887091	rs139735565	CG	C	3366.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:44,99:0.69:143
chr1	1887111	rs3838975	GC	G	3488.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:45,107:0.70:152
chr1	1887245	rs28575980	G	A	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:36,91:0.72:127
chr1	1888193	rs3820011	C	A	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:69,134:0.66:203
chr1	1888330	rs28535696	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr1	1891477	rs2748972	A	G	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:50,144:0.74:194
chr1	1895177	rs7523728	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1896440	rs16824585	G	A	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	1896553	rs28625839	C	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=25.62;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	1897753	rs4648600	C	G	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	1900024	rs56985589	TG	T	406.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	1900106	rs145742571	T	TCTC	1868.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	1900232	rs16824588	T	C	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	1900332	rs55709963	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.850;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	1900339	rs56126097	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	1916890	rs3795280	C	T	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	1918488	rs4350140	A	G	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=27.02;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	1918535	rs4535948	A	T	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	1918584	rs4603072	C	T	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	1918595	rs4466593	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	1922303	rs13303195	C	T	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	1956362	rs2376805	G	A	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	1957037	rs2229110	T	C	11199.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:1,420:1.00:421
chr1	1960926	rs28581504	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	1986736	rs35052584	GA	G	398.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr1	1987993	rs12184	T	C	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:41,71:0.63:112
chr1	1988044	rs3820005	G	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr1	1991162	rs1878747	G	A	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:14,51:0.78:65
chr1	1991173	rs2247923	A	G	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr1	2005740	rs2459986	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	2105427	rs142352833	C	T	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:78,132:0.63:210
chr1	2106840	rs12135175	T	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	2106896	rs12135178	T	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	2118539	rs2503699	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr1	2121037	.	TGCGGGGGAGCCGAGAGGCGGGGCTGCTG	T	562.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr1	2126139	rs6662296	C	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	2126229	.	CCGCCCCTCCA	C	254.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	2144982	rs2480714	G	T	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:26,80:0.75:106
chr1	2234632	rs2279702	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr1	2235656	rs11577387	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr1	2286947	rs1039100	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	2288852	rs2645087	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.909;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr1	2303347	.	C	CA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.623;QD=3.41;ReadPosRankSum=1.138;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	2310470	rs903902	A	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.830;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr1	2319796	rs370169217	C	T	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=2.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.272;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:159,51:0.24:210
chr1	2328714	rs2645081	A	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	2332391	rs12037485	C	T	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:22,73:0.77:95
chr1	2338126	rs3795269	C	A	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:58,107:0.65:165
chr1	2340200	rs2494598	T	C	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	2409892	rs12727342	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr1	2411451	rs10797428	A	G	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:45,79:0.64:124
chr1	2418935	rs10910082	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	2420590	rs10752744	T	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr1	2420913	rs6668720	A	G	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr1	2422614	rs2477699	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	2426766	rs3001347	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	2426792	.	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.427;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr1	2428874	rs2477706	T	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=14.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=0.489;SOR=4.457;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr1	2430617	rs2296442	C	T	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:42,124:0.75:166
chr1	2433900	rs12736998	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr1	2444414	rs7535528	G	A	4596.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:97,211:0.69:308
chr1	2452569	rs2985862	T	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:17,49:0.74:66
chr1	2458010	rs143275045	G	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:121,67:0.36:188
chr1	2487663	rs2227312	C	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=1.264;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:103,29:0.22:132
chr1	2487766	rs2227313	T	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-1.481;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:174,61:0.26:235
chr1	2488153	rs4870	A	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr1	2490942	rs2281852	C	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=13.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-2.583;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:161,47:0.23:208
chr1	2491205	rs2234161	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:193,106:0.35:299
chr1	2494330	rs2234167	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:157,66:0.30:223
chr1	2494785	rs8725	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr1	2518186	rs10752746	A	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.27;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	2522392	rs2296443	G	A	184.22	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr1	2527678	rs2260976	A	G	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	2528133	rs2843401	T	C	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	2529552	rs112057155	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	2530341	rs34705971	A	AG	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr1	2560735	rs4648657	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	2560818	.	CCAG	C	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.903;QD=1.45;ReadPosRankSum=0.773;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:116,14:0.11:130
chr1	2560882	rs4648658	G	A	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	2560903	rs4648659	T	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	2573199	rs4648662	A	G	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	2700117	rs4648502	C	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr1	2983963	rs2297828	G	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:114,46:0.29:160
chr1	3044652	rs35529420	C	T	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-0.849;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:39,60:0.61:99
chr1	3102751	rs187194973	G	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:144,71:0.33:215
chr1	3310928	rs145881072	C	CCG	228.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	3311212	rs2493253	C	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.142;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr1	3327805	rs57382922	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr1	3328358	rs870124	T	C	2887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=652;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.928;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:474,177:0.27:651
chr1	3335158	.	A	G	1405.77	.	AC=1;AF=0.500;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	0/1:180,79:0.31:259
chr1	3350134	rs10752734	T	C	1665.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:6,60:0.91:66
chr1	3383593	rs3893316	G	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	3383665	rs7550948	G	A	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	3383898	rs6424078	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	3385256	rs1891143	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	3385330	rs2493249	T	C	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	3389727	rs2185639	C	T	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	3390238	rs2493323	T	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	3394456	rs4638054	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	3394640	rs4422946	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	3394674	rs4534324	T	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	3395039	rs10797395	G	A	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	3395229	rs4553117	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	3395973	rs70938094	ACC	A	4375.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=41.67;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	3396609	rs881978	C	T	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	3397188	rs2487677	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	3414105	rs10909951	C	T	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:22,81:0.79:103
chr1	3416449	rs7553399	C	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chr1	3417131	rs2821031	A	G	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:53,91:0.63:144
chr1	3417960	rs4648507	G	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr1	3418565	.	T	C	1247	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=3;HapScore=1;MGOF=46;MMLQ=24;MQ=52.38;NF=13;NR=46;PP=1247;QD=21.7249358059;SC=GGGCTCCTGGTGAGTGTGCCC;SbPval=0.51;Source=Platypus;TC=60;TCF=13;TCR=47;TR=59;WE=3418588;WS=3418555;set=Platypus	GT:AD:AF:DP	1/1:1,59:0.98:60
chr1	3418613	.	CCG	C	1156	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=6;HapScore=2;MGOF=70;MMLQ=28;MQ=43.02;NF=0;NR=18;PP=1156;QD=65.3888888889;SC=GTGTGCCCCCCCGGCGCCTCC;SbPval=1.0;Source=Platypus;TC=19;TCF=1;TCR=18;TR=18;WE=3418626;WS=3418603;set=Platypus	GT:AD:AF:DP	1/0:1,18:0.95:19
chr1	3418616	.	GCG	ACA	643	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=70;MMLQ=28;MQ=43.81;NF=1;NR=15;PP=643;QD=43.5292421789;SC=TGCCCCCCCGGCGCCTCCTCA;SbPval=0.98;Source=Platypus;TC=24;TCF=6;TCR=18;TR=16;WE=3418626;WS=3418603;set=Platypus	GT:AD:AF:DP	1/0:8,16:0.67:24
chr1	3421658	rs2821009	A	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr1	3428160	rs2820999	T	G	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=1.196;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:117,38:0.25:155
chr1	3428424	rs4648391	G	T	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.366;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.143;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:55,26:0.32:81
chr1	3428428	rs4648514	C	T	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.450;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-0.275;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:51,26:0.34:77
chr1	3428608	rs11585362	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:63,24:0.28:87
chr1	3440647	rs2794322	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	3440943	rs12049449	A	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	3496328	rs2821051	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	3496479	rs2794340	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr1	3512188	rs7554061	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr1	3518944	rs7521546	T	C	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:17,57:0.77:74
chr1	3519179	rs2794330	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:118,54:0.31:172
chr1	3527944	rs10797402	C	G	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	3528082	rs10797403	T	C	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	3542106	rs3838971	T	TG	282.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,17:0.25:69
chr1	3544235	rs5772111	TA	T	617.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr1	3545175	rs147637374	GTTCTGGGAGCTCCTCCCCC	G	555.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	3548136	rs2760321	T	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	3549852	rs2273954	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.667;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr1	3555428	rs3818330	G	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.914;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr1	3563512	rs34514629	GC	G	208.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	3566625	rs145464993	AGCAGGCTG	A	961.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr1	3566706	rs2251098	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	3607520	rs3765730	G	A	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:50,94:0.65:144
chr1	3638674	rs1801174	C	T	12897.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr1	3640085	rs6424091	C	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.96;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	3640134	rs35939665	TCTGC	T	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	3644085	rs10910017	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr1	3644349	rs2181486	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	3644374	rs2146657	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	3645835	rs2254530	C	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.82;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	3645844	rs2096224	G	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.87;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	3646137	rs11589885	C	T	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	3646192	rs1885867	G	A	7072.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	3646214	rs1885866	T	C	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	3646291	rs1885865	G	A	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	3647962	rs1745813	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	3659657	rs2298222	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,30:0.30:100
chr1	3662845	rs3737589	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.65;ReadPosRankSum=1.201;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	3669201	rs10797410	A	G	2551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.844;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:234,80:0.25:314
chr1	3669205	rs10910021	C	G	2564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.198;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:228,77:0.25:305
chr1	3672156	rs4648555	C	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr1	3673496	rs4648405	T	G	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	3677933	rs1181883	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.214;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr1	3679139	rs1181879	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=1.194;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr1	3679146	rs4648556	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-1.588;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr1	3679775	rs10910024	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=0.029;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr1	3683690	rs1181873	A	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr1	3701491	rs2996426	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	3703337	rs2368537	G	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	3732103	rs4648409	T	C	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.982;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:114,49:0.30:163
chr1	3732172	rs4233019	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:57,19:0.25:76
chr1	3732707	rs6702935	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.426;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr1	3732782	rs6703035	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr1	3743109	rs2275834	A	G	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,28:0.32:87
chr1	3743132	rs4648344	T	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:83,43:0.34:126
chr1	3743391	rs6688969	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:89,45:0.34:134
chr1	3743433	rs5772126	T	TG	390.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr1	3745721	rs2275833	C	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-1.245;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr1	3745787	rs2275832	T	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:89,41:0.32:130
chr1	3746583	rs2275828	G	T	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.51;ReadPosRankSum=-0.304;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:3,24:0.89:27
chr1	3746589	rs2275826	C	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	3747580	rs6424058	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	3747603	rs6413779	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	3753136	rs2275824	A	T	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:47,113:0.71:160
chr1	3755675	rs1891941	T	C	13778.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr1	3756120	rs1539649	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr1	3759784	rs10797347	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	3761479	rs2275822	C	T	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-0.804;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:15,25:0.62:40
chr1	3761650	rs2275821	A	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	3761772	rs7538067	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr1	3775454	rs4376673	C	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	3782115	rs12127483	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr1	3782608	rs10909809	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	3786189	rs1141070	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr1	3788968	rs111645751	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=1.184;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	3789178	.	G	GGGCCCTGTCCCTGCCGC	2900	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=67.16;NF=6;NR=30;PP=2900;QD=20;SC=AGTGCCTGCAGGGCCCTGTCC;SbPval=0.32;Source=Platypus;TC=47;TCF=6;TCR=41;TR=36;WE=3789186;WS=3789168;set=Platypus	GT:AD:AF:DP	1/1:11,36:0.77:47
chr1	3789194	.	G	GCGGCCC	2686.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.86;QD=38.38;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	3789195	.	T	C	832	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=3;HapScore=1;MGOF=51;MMLQ=24;MQ=66.0;NF=11;NR=23;PP=832;QD=25.4932709573;SC=GTCCCTGCCGTGGCCCTGTCC;SbPval=0.56;Source=Platypus;TC=34;TCF=11;TCR=23;TR=34;WE=3789203;WS=3789185;set=Platypus	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	3789195	.	T	TGTCCCTGCCGC	2686.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.94;QD=42.65;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	3789362	rs35930817	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	3800242	rs3205087	A	G	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:169,74:0.30:243
chr1	3806597	.	C	G	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=3.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=1.595;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:115,65:0.36:180
chr1	3806643	rs4520357	T	A	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,68:0.58:117
chr1	3807122	rs7513321	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:18,56:0.76:74
chr1	3807388	rs4131373	G	A	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:55,135:0.71:190
chr1	3807593	rs4274008	G	C	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	3809326	rs72849326	C	T	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:22,70:0.76:92
chr1	3816587	rs35704040	GC	G	1722.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr1	3816598	rs112821673	A	C	1887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.888;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.60;ReadPosRankSum=0.319;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:19,47:0.71:66
chr1	3816604	rs112886428	G	A	1947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.07;ReadPosRankSum=0.557;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:19,48:0.72:67
chr1	3816683	rs113529609	A	G	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:53,135:0.72:188
chr1	3816892	.	TCCCC	T	146.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.719;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-0.000;QD=16.31;ReadPosRankSum=2.200;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	3816897	.	C	T	181.80	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=25.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	4772053	rs1061968	T	C	2581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=1.475;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:81,124:0.60:205
chr1	4772717	rs242056	G	A	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	4847845	rs4654460	G	A	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:56,162:0.74:218
chr1	5623965	rs9439613	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	5934490	rs868163	A	G	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	5934837	rs1287638	C	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	5935162	rs1287637	A	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	5935222	rs963030	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	5937391	rs3747989	C	T	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	5939544	rs11121915	T	G	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	5939677	rs180914600	G	C	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-2.049;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr1	5948677	rs2282281	G	A	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	5964991	rs3737234	T	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	6027167	rs875574	C	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	6027252	rs875573	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	6029086	rs34702999	CA	C	165.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-1.451;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	6038583	rs4908639	G	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	6145365	rs2294936	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	6145379	rs2294935	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	6147341	rs11584419	A	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	6149053	rs2273043	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-0.518;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr1	6149122	rs2273042	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.789;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr1	6150637	rs12081978	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	6154417	rs2294932	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.760;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr1	6155332	rs1555144	T	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	6157282	rs749434	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr1	6157297	rs749435	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	6157434	rs2311802	C	T	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:60,107:0.64:167
chr1	6158562	rs2229002	A	G	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr1	6162054	rs6696489	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	6162229	rs138682656	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	6170300	rs200114858	CACT	C	158.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	6170424	rs78789357	CG	C	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.872;QD=4.41;ReadPosRankSum=0.668;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:93,23:0.20:116
chr1	6172875	rs4908515	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	6173649	rs2785580	A	G	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	6184092	rs2843493	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr1	6184539	rs151034675	G	A	3568.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:48,174:0.78:222
chr1	6185608	rs61749270	G	A	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.421;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:121,46:0.28:167
chr1	6186961	rs2746060	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	6239937	rs70981314	C	CG	3626.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	6253200	.	A	G	1123.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr1	6257826	rs2294714	T	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:45,15:0.25:60
chr1	6257856	rs2294713	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	6272137	rs709208	A	G	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.886;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:118,49:0.29:167
chr1	6278414	rs709209	A	G	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=4.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.303;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:135,44:0.25:179
chr1	6279370	rs846111	G	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-1.425;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr1	6305292	rs61760836	C	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:7,46:0.87:53
chr1	6305303	rs61760837	C	A	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:9,47:0.84:56
chr1	6313938	rs12735670	C	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:22,70:0.76:92
chr1	6314349	rs6696630	A	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr1	6314479	rs12740426	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr1	6314822	rs11590458	T	C	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:32,98:0.75:130
chr1	6453520	rs76483502	C	CG	116	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	6473294	rs7529205	A	G	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:9,42:0.82:51
chr1	6485305	rs199562318	T	A	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr1	6500919	rs3817918	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	6501044	rs2311045	C	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.83;ReadPosRankSum=-0.038;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr1	6508855	.	G	A	67.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	6511582	rs9434774	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	6521150	rs2986758	A	C	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:35,85:0.71:120
chr1	6524501	rs11800462	T	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:29,80:0.73:109
chr1	6524688	rs3170675	T	C	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.213;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:91,28:0.24:119
chr1	6525335	rs2274510	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr1	6528468	rs76625876	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr1	6529188	rs62639695	C	T	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-0.162;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:38,78:0.67:116
chr1	6529443	rs730600	A	G	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:89,209:0.70:298
chr1	6529748	rs943584	G	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	6530435	rs2986753	A	G	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:54,115:0.68:169
chr1	6530965	rs111312565	C	CG	1127.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	6531124	rs61740145	T	C	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=0.838;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:34,69:0.67:103
chr1	6531650	rs112471131	C	T	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:26,79:0.75:105
chr1	6533393	rs61741379	G	C	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr1	6535048	rs77777178	A	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:15,66:0.81:81
chr1	6545390	rs75490131	A	T	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr1	6557009	rs3007430	A	C	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=4.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=0.235;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:44,106:0.71:150
chr1	6579607	rs1556035	C	T	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	6585804	rs13513	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	6586070	rs7548042	C	T	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	6591937	rs932112	T	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	6601773	rs3761927	T	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	6609559	rs11122091	C	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	6609851	rs10864622	A	G	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	6609896	rs11579888	G	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	6610366	rs2063805	T	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	6610382	rs2063806	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	6610743	.	C	CTT	37	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5031;HP=18;HapScore=3;MGOF=35;MMLQ=15;MQ=59.51;NF=0;NR=4;PP=37;QD=10.0;SC=ATTCTAAAATCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=4;WE=6610751;WS=6610733;set=Platypus	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	6614391	rs6693391	A	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.88;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	6614415	rs6693400	A	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.57;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	6614535	rs4908923	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	6614653	rs4908924	C	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	6615690	rs925745	A	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	6615695	rs925744	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	6635231	rs10864628	A	G	6263.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	6635306	rs34160967	G	A	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:245,109:0.31:354
chr1	6636461	rs17492553	C	T	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	6645867	rs6682920	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	6646959	rs3833475	GCCTGCCTTC	G	5415.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:67,140:0.68:207
chr1	6655444	rs2232463	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-1.045;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr1	6659505	rs2232460	G	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:35,102:0.74:137
chr1	6662913	rs6674407	G	A	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	6677064	rs10779795	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	6681744	rs3747994	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr1	6685442	rs12746591	A	G	41.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.45;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	6690140	rs742394	A	G	231.31	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr1	6692273	rs34491693	C	CA	123.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr1	6692596	rs202136073	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr1	6693097	rs3174820	A	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr1	6694207	rs12727844	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	6694574	rs6804	G	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,54:0.77:70
chr1	6695802	rs6577583	A	G	1759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.33;ReadPosRankSum=1.378;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:20,76:0.79:96
chr1	6704635	rs200458	A	G	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	6705874	rs200454	G	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.338;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:101,34:0.25:135
chr1	6711146	rs12145525	T	C	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:34,88:0.72:122
chr1	6761702	rs3761925	C	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr1	6866978	rs660880	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=1.302;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	6947717	rs3810982	C	T	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:45,82:0.65:127
chr1	7151479	rs72640073	T	C	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:57,122:0.68:179
chr1	7202190	rs970973	T	C	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	7289606	rs6659573	T	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.23;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	7289612	rs6659575	T	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	7289619	rs6577423	G	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	7527996	rs1201529	T	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-1.863;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:52,24:0.32:76
chr1	7737799	rs3011926	A	G	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	7807897	rs12133253	A	G	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	7807966	rs34083763	GT	G	603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.178;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr1	7809728	rs60799863	C	CT	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=1.306;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr1	7811014	rs1573753	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	7811215	rs10779689	A	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	7812398	rs9919223	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	7833485	rs11576572	G	A	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.712;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.554;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:92,51:0.36:143
chr1	7845695	rs228729	T	C	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	7847362	rs35115980	C	CT	41.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	7854209	rs11807683	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	7861153	rs34433622	C	CT	1047.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	7861158	rs3213578	T	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.736;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr1	7861345	rs488728	G	A	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	7863293	rs228642	C	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	7869915	rs228668	G	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	7870048	rs228669	T	C	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	7870144	rs228670	A	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	7870418	rs228671	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	7879322	rs228690	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,44:0.80:55
chr1	7880469	rs228691	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	7880683	rs10462020	T	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.677;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:108,20:0.16:128
chr1	7887493	rs228696	T	C	11074.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	7887579	rs228697	C	G	5601.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:123,246:0.67:369
chr1	7889804	rs228701	C	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	7889972	.	GAGAATCCATCCCATCCTACTGCCAGCGCTCTGTCCACAGGATCGCCTCCCATGA	G	5362.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.94;MQRankSum=-0.885;QD=25.06;ReadPosRankSum=-1.871;SOR=0.575;set=HC	GT:AD:AF:DP	1/1:5,209:0.98:214
chr1	7890117	rs2640909	T	C	15898.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:1,604:1.00:605
chr1	7890264	rs1773135	A	G	4598.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	7897133	rs10462021	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.893;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr1	7897228	rs228654	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr1	7902559	.	C	CAA	64.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.96;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	7906364	rs139237447	A	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.540;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr1	7906476	rs172932	G	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	7906859	rs141522407	T	TAAGA	1825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.346;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:134,54:0.29:188
chr1	7911099	rs228651	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	7913430	rs228648	G	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:32,67:0.68:99
chr1	7998963	rs226476	T	G	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	8022772	rs144768319	CAG	C	40.73	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:2,2:0.50:4
chr1	8029494	rs2641116	T	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=1.545;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	8029509	rs2640906	GG	AA	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.799;QD=23.40;ReadPosRankSum=-1.120;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	8029644	.	CTT	C	28	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=0.9992;HP=14;HapScore=2;MGOF=22;MMLQ=24;MQ=62.13;NF=0;NR=2;PP=28;QD=16.0;SC=TTAACTCAAACTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=2;WE=8029653;WS=8029634;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr1	8384268	rs6702047	T	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	8390246	rs12565834	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr1	8390495	rs1058619	A	G	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:46,117:0.72:163
chr1	8390888	rs2289731	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.938;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:88,18:0.17:106
chr1	8395441	rs2305016	T	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,26:0.28:94
chr1	8397803	rs7520373	C	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr1	8415235	rs1889854	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=2.115;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:71,26:0.27:97
chr1	8415290	rs1889853	C	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr1	8418644	rs11121172	C	A	5675.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	8418650	rs1058766	T	C	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	8421092	rs2784735	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=1.432;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr1	8421203	rs13596	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr1	8422676	rs2252865	T	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.868;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chr1	8424984	rs34269918	GA	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.762;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	8526142	rs4908760	G	A	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	8557320	rs7518608	C	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	8557691	rs7530745	A	C	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	8926285	rs3831913	A	AG	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr1	8930369	rs2781060	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	8930385	rs2765511	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	8935149	rs2038904	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr1	9006101	.	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.220;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	9009214	rs2274326	C	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	9009406	rs2274327	C	T	2667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-0.857;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:44,122:0.73:166
chr1	9009444	rs2274328	A	C	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:37,101:0.73:138
chr1	9011722	rs3765966	G	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr1	9017204	rs2274333	A	G	2757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-0.450;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:70,131:0.65:201
chr1	9030964	rs3737665	C	T	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:39,82:0.68:121
chr1	9034301	rs72641578	T	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.176;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:76,24:0.24:100
chr1	9034421	rs3765964	G	A	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:37,113:0.75:150
chr1	9034598	rs3765963	A	G	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	9034815	rs35753212	C	CAGA	3413.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	9063602	rs4908804	G	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr1	9073801	rs7537425	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	9074932	rs1556757	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	9079154	rs12031065	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	9084924	rs2027222	T	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	9117371	.	A	AAAAG	237.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.39;ReadPosRankSum=-1.593;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	9165685	rs72637739	G	A	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	9165868	rs1705303	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	9171238	rs12135666	G	T	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	9305445	rs34603401	A	C	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=5.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-0.698;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:227,75:0.25:302
chr1	9323463	rs141143158	C	CTGAGGCAG	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr1	9323910	rs6688832	G	A	6013.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:102,256:0.72:358
chr1	9324213	rs17368528	C	T	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=0.986;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:98,42:0.30:140
chr1	9324571	rs9434742	T	C	7978.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	9324670	rs9434743	A	G	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	9627521	rs6698575	A	G	244.18	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	9639938	.	TCTC	T	927.73	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr1	9642329	rs56026893	C	T	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr1	9655795	rs4073710	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr1	9658465	rs9430181	T	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:68,26:0.28:94
chr1	9658707	rs9430182	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chr1	9661061	rs9430184	A	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr1	9670483	rs4244632	T	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:122,59:0.33:181
chr1	9670834	rs4926472	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:71,36:0.34:107
chr1	9671257	rs70979767	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-0.691;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr1	9770690	rs112806445	C	CAG	424.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr1	9777586	rs28730669	G	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.874;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	9779871	rs9430220	T	C	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr1	9781412	rs12735071	C	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:63,28:0.31:91
chr1	9782556	rs11589267	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=0.979;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:73,36:0.33:109
chr1	9792105	rs377673198	G	GA	435.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	9816620	rs6680090	T	C	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	10001235	rs137978085	TTTCG	T	1226.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	10027540	rs2890358	G	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	10318652	rs12402052	C	G	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.751;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:149,59:0.28:208
chr1	10322054	rs4846209	G	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=6.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.954;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:98,34:0.26:132
chr1	10322153	rs4846210	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.605;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr1	10327407	rs12141246	A	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	10328338	rs1339458	C	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-1.767;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:59,29:0.33:88
chr1	10335315	rs6685773	G	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	10339209	rs35347635	CAT	C	1706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.599;QD=9.33;ReadPosRankSum=-1.910;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:131,52:0.28:183
chr1	10342352	rs3748575	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.062;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr1	10342629	rs3748576	G	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	10355834	rs3753037	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	10356562	rs2275424	C	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	10356848	rs912961	A	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr1	10384176	rs3831405	C	CTTGAAA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=8.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.389;SOR=0.038;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr1	10394536	rs2276100	C	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr1	10397387	rs143254952	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:55,24:0.30:79
chr1	10402009	rs33942183	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=0.987;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	10403482	rs1556916	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr1	10408016	.	AT	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.477;QD=2.67;ReadPosRankSum=1.208;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	10420918	rs3748578	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:83,33:0.28:116
chr1	10420937	rs3748579	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,43:0.33:129
chr1	10425117	.	AT	A	39	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=8;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=2;NR=2;PP=39;QD=14.0;SC=TTGGAATTGAATTTTTTTTCT;SbPval=0.16;Source=Platypus;TC=11;TCF=9;TCR=2;TR=4;WE=10425125;WS=10425107;set=Platypus	GT:AD:AF:DP	1/0:7,4:0.36:11
chr1	10428452	rs12130563	G	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr1	10431158	rs17411502	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr1	10435170	rs11121551	T	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	10435324	rs11121552	C	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=6.50;ReadPosRankSum=1.437;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr1	10459779	rs3737155	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr1	10460485	rs1049887	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	10460716	rs35314429	A	AT	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=1.287;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	10471789	rs2236678	A	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	10473196	rs2229687	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr1	10479635	rs2298570	C	G	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:261,114:0.30:375
chr1	10479678	rs1889309	G	A	1723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.300;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:269,114:0.30:383
chr1	10490759	rs143754643	TTGGCTTAAC	T	71.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	10502307	rs33919161	AT	A	326.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	10511330	rs3838398	AT	A	110.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.385;QD=8.50;ReadPosRankSum=0.105;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	10511544	rs628462	C	T	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr1	10511589	rs666103	T	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	10529194	rs2781233	T	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr1	10555257	rs622623	C	T	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:49,70:0.59:119
chr1	10596341	rs12375	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=1.507;SOR=1.622;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr1	10596388	rs2480779	A	G	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	10659152	rs145432748	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	10689942	rs11539794	G	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr1	10713285	.	G	A	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.787;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=8.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.551;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:149,55:0.27:204
chr1	10713765	rs284294	T	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,64:0.71:90
chr1	10714436	rs35604552	C	T	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr1	10716839	.	TCCCAGCCCCAGC	T	886.73	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr1	10719645	rs475980	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr1	10725469	rs149479567	G	A	1611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-0.119;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:211,97:0.31:308
chr1	11008102	rs1281018	G	A	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:45,91:0.67:136
chr1	11008497	rs1281017	G	C	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:42,126:0.75:168
chr1	11008594	rs1281016	A	T	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:32,100:0.76:132
chr1	11009679	rs1281013	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	11009703	rs1281012	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	11016942	rs11121660	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr1	11017609	rs7511959	T	C	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=1.415;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr1	11017617	rs34691090	G	C	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.68;ReadPosRankSum=0.979;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:17,28:0.62:45
chr1	11017634	rs35950437	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr1	11018765	rs12758610	G	A	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.924;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:33,94:0.74:127
chr1	11024271	rs11121662	G	T	4555.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:96,201:0.68:297
chr1	11024353	rs6659231	A	G	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:55,121:0.69:176
chr1	11024381	rs6659326	A	G	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,85:0.67:126
chr1	11024395	rs11121663	T	C	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:31,73:0.70:104
chr1	11030014	rs56044863	G	A	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:18,78:0.81:96
chr1	11036050	rs79323519	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	11042201	rs56848003	C	CAG	970.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	11079077	rs2273348	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	11080723	.	T	TG	133	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=20;MQ=60.0;NF=0;NR=8;PP=133;QD=24.6057200589;SC=CCCAGCACTTTGGAGGCCGAG;SbPval=1.0;Source=Platypus;TC=15;TCF=1;TCR=14;TR=8;WE=11080731;WS=11080713;set=Platypus	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	11086097	rs3215616	A	AT	669.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr1	11087524	rs1782455	G	A	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:140,74:0.35:214
chr1	11090916	rs12711521	C	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.393;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:61,13:0.18:74
chr1	11094665	rs11121684	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=-0.000;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	11094757	rs70977538	G	GA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.598;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	11095039	rs6695096	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=1.451;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	11104845	rs9430347	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	11105106	rs2273345	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr1	11105122	rs2273344	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=0.400;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr1	11119899	rs7545802	T	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	11126569	rs2791659	C	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	11126941	rs6701726	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr1	11128001	rs2791657	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=1.430;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	11128654	rs2791655	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr1	11129848	rs2791653	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr1	11132217	rs1130683	G	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=-3.212;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr1	11134157	rs2748876	T	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr1	11134470	.	A	AT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.356;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr1	11141187	rs2258621	C	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=1.532;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:109,33:0.23:142
chr1	11151779	rs1148482	A	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	11181327	rs11121691	C	T	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:78,172:0.69:250
chr1	11187893	rs1770344	T	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	11190646	rs2275527	G	A	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr1	11205058	rs1057079	C	T	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:123,69:0.36:192
chr1	11288758	rs1064261	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-2.390;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr1	11292666	rs10864495	T	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	11294474	rs718206	T	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	11298790	rs2024627	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.973;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	11301714	rs1135172	A	G	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=1.111;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:173,60:0.26:233
chr1	11317320	rs2092642	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr1	11318763	rs2076657	C	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	11319587	.	A	G	28	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=4;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=0;NR=3;PP=28;QD=20.9237375157;SC=CTTGTCAGGCAGGGGATTCTA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=3;WE=11319595;WS=11319577;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	11333812	rs114000606	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:72,33:0.31:105
chr1	11561164	rs41274528	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr1	11561593	rs2817580	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:128,54:0.30:182
chr1	11561937	rs12144924	C	T	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:57,110:0.66:167
chr1	11562913	rs60362998	C	T	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:43,101:0.70:144
chr1	11575375	rs2594318	T	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.127;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.760;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr1	11575398	rs12135502	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:27,81:0.75:108
chr1	11584164	rs2076469	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr1	11593793	rs113116961	T	TGCACACACGCAC	4720.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	11594400	rs2235663	T	C	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:56,156:0.74:212
chr1	11595490	.	C	A	401.77	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr1	11596455	rs2594310	C	T	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:63,109:0.63:172
chr1	11596762	rs2235666	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr1	11596864	rs2745295	A	G	109.94	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	11708736	rs1055547	T	C	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.354;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:129,50:0.28:179
chr1	11709051	rs56192923	A	AG	229.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.787;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr1	11709052	.	C	CCCAG	229.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=1.389;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr1	11710561	rs9614	T	G	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:65,150:0.70:215
chr1	11714368	rs2272983	T	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr1	11734706	.	G	A	230.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	11735652	rs2233025	G	A	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:35,88:0.72:123
chr1	11735877	rs2233022	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr1	11737051	rs2294638	G	C	3048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.718;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-1.549;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:82,142:0.63:224
chr1	11740358	rs7417320	A	G	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:58,75:0.56:133
chr1	11769665	.	G	A	227.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	11772303	rs1883574	A	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	11772526	rs1883573	A	G	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	11779499	rs4846028	T	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	11779762	rs12117076	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:88,35:0.28:123
chr1	11782814	rs7414943	G	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	11782886	rs6540990	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-0.533;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	11782889	.	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-0.427;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	11796168	rs146190997	CGGGCG	C	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	11807426	rs12752700	C	T	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=-0.133;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:32,56:0.64:88
chr1	11808706	rs11121819	T	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr1	11824242	rs4845876	A	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr1	11824303	rs4845877	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.378;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr1	11824346	rs4845878	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:71,25:0.26:96
chr1	11824556	rs4845879	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr1	11824575	rs10864536	T	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=6.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.591;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr1	11824578	rs11121825	C	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.143;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr1	11825851	rs10218813	G	C	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	11826630	rs6668699	C	T	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	11827180	rs6540995	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.97;SOR=4.935;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	11827304	rs6540996	A	G	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.300;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	11827355	rs6540997	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=3.109;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	11828238	rs4845880	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	11828319	rs4845881	G	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	11831543	rs72638684	C	T	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr1	11831615	rs6667720	C	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	11831756	rs6680385	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	11832100	rs11121827	T	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=1.136;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	11832311	rs10779764	G	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=0.421;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	11835455	rs72638698	T	G	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:32,70:0.69:102
chr1	11835556	rs41275456	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:25,61:0.71:86
chr1	11836441	rs6699669	T	C	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=30.85;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	11836441	.	TG	CA,CG	537	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=18;MQ=60.15;NF=12,38;NR=5,22;PP=148,537;QD=11.8510514625;SC=AAGAGGGGCCTGAGGCAGCAG;SbPval=0.79;Source=Platypus;TC=61;TCF=38;TCR=23;TR=17,60;WE=11836450;WS=11836431;set=Platypus	GT:AF:DP	0/1:0.28:61
chr1	11836442	rs6659541	G	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.637;QD=4.66;ReadPosRankSum=-0.276;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr1	11836628	rs6699881	T	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	11836670	rs41275458	C	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr1	11836682	rs7538516	C	T	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.147;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr1	11838696	rs72640210	A	G	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:35,110:0.76:145
chr1	11838762	rs72640211	G	A	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:47,135:0.74:182
chr1	11838841	rs56001051	A	G	2012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.821;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.97;ReadPosRankSum=-1.920;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:29,83:0.74:112
chr1	11838848	rs6697244	G	T	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=1.296;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:72,28:0.28:100
chr1	11839009	rs55685198	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr1	11839034	rs55967531	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr1	11839201	rs41307759	T	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	11839226	rs41307757	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	11839792	rs12566905	T	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	11839923	rs12561919	C	T	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=-0.296;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr1	11839966	rs4846043	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=0.464;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	11839998	rs4846044	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	11844330	rs10864543	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:80,29:0.27:109
chr1	11845113	rs11587953	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	11845167	rs199890035	TTTA	T	1539.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr1	11845169	rs11586659	T	G	370.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr1	11845222	rs55867221	T	C	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr1	11847334	rs35134728	G	GGAA	127.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	11847759	rs3737966	C	T	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	11847861	rs1537516	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	11847902	rs1537515	C	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr1	11848068	rs1537514	G	C	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:29,77:0.73:106
chr1	11848879	rs2077360	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr1	11848972	rs72640221	G	A	325.82	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	11849447	rs868014	A	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	11851003	rs3818762	G	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr1	11852300	rs1476413	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:38,78:0.67:116
chr1	11852516	rs17375901	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	11854457	rs4846051	G	A	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	11854476	rs1801131	T	G	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:49,142:0.74:191
chr1	11854671	rs12121543	C	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr1	11854755	rs1994798	G	A	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=5.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-1.386;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:128,70:0.35:198
chr1	11854896	rs2066462	G	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr1	11856378	rs1801133	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=1.294;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr1	11863057	rs2066470	G	A	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:67,122:0.65:189
chr1	11867044	rs3737964	T	C	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	11876662	rs17376328	G	A	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=0.507;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:57,112:0.66:169
chr1	11879685	rs198393	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr1	11879699	rs2050265	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr1	11883731	rs12567136	C	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr1	11884555	rs198400	A	G	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	11886383	rs138460149	C	CTG	2660.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:22,67:0.75:89
chr1	11887303	rs7537765	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	11887316	rs41275478	C	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	11888384	rs198401	A	G	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:10,52:0.84:62
chr1	11889468	rs535107	A	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=1.056;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr1	11894133	rs41275494	A	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr1	11897286	rs72640267	G	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr1	11897592	rs198406	A	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr1	11898859	rs55741089	G	A	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:89,220:0.71:309
chr1	11899033	rs1023252	G	T	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:48,110:0.70:158
chr1	11900035	rs198410	G	A	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	11905974	rs5068	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr1	11971345	rs4845889	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.875;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	11980449	rs17037529	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.209;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr1	11982544	rs2639453	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.730;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.523;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr1	11983206	rs3795408	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-5.823;QD=3.56;ReadPosRankSum=-0.411;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr1	12004479	.	TAC	T	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=11.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.792;SOR=2.233;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	12056440	rs2236056	C	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	12061598	rs41278632	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr1	12062205	rs2236057	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr1	12071680	rs1042842	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	12082926	rs2295283	A	G	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=0.250;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:19,66:0.78:85
chr1	12091210	rs946461	T	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	12144434	rs1201113	G	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.708;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:113,30:0.21:143
chr1	12157076	rs11121856	A	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr1	12164437	rs2230622	C	T	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr1	12175729	rs1763642	C	T	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	12183174	rs4846096	A	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	12198635	rs6419481	T	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	12249031	rs1201157	A	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr1	12252333	rs150721544	C	CTG	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-0.949;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	12321247	rs74819464	G	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.502;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	12339619	rs4845898	A	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=2.157;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:74,33:0.31:107
chr1	12401868	rs28551666	A	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.327;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:78,36:0.32:114
chr1	12418700	rs10864552	T	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	12445490	rs149481587	TTGG	T	385.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	12567232	rs7554257	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,35:0.39:89
chr1	12638964	rs2275875	T	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:16,59:0.79:75
chr1	12639018	rs2275874	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr1	12639168	rs3128461	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr1	12725943	rs1419298	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.048;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:109,40:0.27:149
chr1	12776218	rs3000860	A	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	12776344	rs3000859	A	T	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr1	12785093	rs4361998	T	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.06;ReadPosRankSum=-0.820;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	12785494	rs7513079	G	T	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:118,52:0.31:170
chr1	12786070	rs3000930	A	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	12820870	rs1132185	T	C	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:100,46:0.32:146
chr1	12835158	rs77870074	G	A	4215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=-1.090;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:62,108:0.64:170
chr1	12835168	rs17346571	C	A	4277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-2.117;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:58,109:0.65:167
chr1	12835868	rs1812242	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chr1	12837471	rs79193271	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.066;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.155;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-3.453;QD=7.69;ReadPosRankSum=1.360;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	12837475	rs78132363	C	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.611;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-3.598;QD=7.21;ReadPosRankSum=1.298;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr1	12837547	rs200191720	TG	CA	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-8.016;QD=3.59;ReadPosRankSum=-1.244;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:55,11:0.17:66
chr1	12837564	rs200704680	G	T	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-8.056;QD=5.12;ReadPosRankSum=-0.977;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr1	12837570	rs201212047	GA	AG	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.188;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-8.426;QD=4.57;ReadPosRankSum=0.615;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr1	12837619	rs199506940	A	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.947;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-8.464;QD=4.33;ReadPosRankSum=1.412;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr1	12837634	rs848578	T	C	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.050;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-6.751;QD=8.86;ReadPosRankSum=-1.112;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr1	12837652	rs200113689	C	T	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-7.540;QD=6.10;ReadPosRankSum=0.005;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr1	12837664	rs201781857	C	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-6.798;QD=6.16;ReadPosRankSum=0.047;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr1	12837669	rs201008398	G	T	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-6.648;QD=6.36;ReadPosRankSum=-0.247;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr1	12837705	rs199736234	G	GCC	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-5.554;QD=7.01;ReadPosRankSum=0.866;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr1	12837720	rs201425552	G	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-4.628;QD=7.51;ReadPosRankSum=1.273;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr1	12837728	rs77317880	G	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-4.251;QD=7.32;ReadPosRankSum=1.660;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr1	12837764	rs141977389	C	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	12837793	rs201887602	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-2.683;QD=1.45;ReadPosRankSum=-1.754;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr1	12837840	rs848577	G	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=0.791;QD=2.63;ReadPosRankSum=1.420;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	12854383	rs200095016	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=-2.191;QD=5.76;ReadPosRankSum=1.843;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr1	12854400	rs201043652	A	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-3.147;QD=3.97;ReadPosRankSum=1.710;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:61,13:0.18:74
chr1	12854413	rs199957996	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-2.995;QD=3.64;ReadPosRankSum=1.407;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:64,12:0.16:76
chr1	12854414	rs1063769	G	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=8.581;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=-4.705;QD=8.89;ReadPosRankSum=0.752;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr1	12854432	rs1063771	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-3.629;QD=2.34;ReadPosRankSum=1.188;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:69,10:0.13:79
chr1	12854450	rs201569105	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.16;MQRankSum=-3.793;QD=1.74;ReadPosRankSum=-0.149;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:79,10:0.11:89
chr1	12854488	rs148303675	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=7.460;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-5.472;QD=0.46;ReadPosRankSum=-1.033;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:93,9:0.09:102
chr1	12854507	rs199610717	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-5.258;QD=0.50;ReadPosRankSum=-0.766;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:91,7:0.07:98
chr1	12854520	rs199618208	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-5.645;QD=1.05;ReadPosRankSum=-1.295;SOR=1.484;set=HC	GT:AD:AF:DP	0/1:84,8:0.09:92
chr1	12854526	rs200329759	A	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.366;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=-5.752;QD=1.28;ReadPosRankSum=-1.744;SOR=1.742;set=HC	GT:AD:AF:DP	0/1:76,9:0.11:85
chr1	12854530	rs1063776	C	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	12854536	rs1063777	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.085;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-5.352;QD=0.50;ReadPosRankSum=-0.296;SOR=1.757;set=HC	GT:AD:AF:DP	0/1:62,6:0.09:68
chr1	12854538	rs201691575	G	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.104;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-5.247;QD=0.52;ReadPosRankSum=-0.420;SOR=1.786;set=HC	GT:AD:AF:DP	0/1:59,6:0.09:65
chr1	12854544	rs1063778	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=6.352;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-6.568;QD=2.16;ReadPosRankSum=-0.507;SOR=2.005;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr1	12888601	rs113914674	G	GC	265.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	12907282	rs139731855	G	C	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.911;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-6.833;QD=7.37;ReadPosRankSum=0.800;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:78,23:0.23:101
chr1	12907284	rs149796618	TG	CC	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.078;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.33;MQRankSum=-6.986;QD=7.43;ReadPosRankSum=0.481;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr1	12907316	.	T	C	356	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=1;MGOF=51;MMLQ=20;MQ=54.14;NF=20;NR=19;PP=356;QD=10.0197746807;SC=TTCCTCAGCCTCTTTTTCATC;SbPval=0.26;Source=Platypus;TC=139;TCF=83;TCR=56;TR=39;WE=12907324;WS=12907315;set=Platypus	GT:AD:AF:DP	1/0:100,39:0.28:139
chr1	12907350	rs2359486	CA	TG	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.932;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=10.445;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-10.547;QD=3.92;ReadPosRankSum=0.116;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:125,27:0.18:152
chr1	12907370	rs2076063	A	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=9.615;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-10.426;QD=2.67;ReadPosRankSum=-1.201;SOR=1.588;set=HC	GT:AD:AF:DP	0/1:138,22:0.14:160
chr1	12907379	rs74055698	T	C	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:54,111:0.67:165
chr1	12907380	rs141207681	C	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=12.463;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-9.482;QD=2.06;ReadPosRankSum=-1.484;SOR=2.002;set=HC	GT:AD:AF:DP	0/1:150,20:0.12:170
chr1	12907385	rs150590256	G	A	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=12.385;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-8.997;QD=1.99;ReadPosRankSum=-2.055;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:153,20:0.12:173
chr1	12907400	rs149302457	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=18.896;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-6.554;QD=0.28;ReadPosRankSum=-1.704;SOR=3.396;set=HC	GT:AD:AF:DP	0/1:161,12:0.07:173
chr1	12907449	rs78163065	C	G	2597.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:75,119:0.61:194
chr1	12907496	rs138700801	T	C	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:61,83:0.58:144
chr1	12907507	rs12409975	CT	TC	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;JOINED;set=Intersection	GT:AD:AF:DP	0/1:50,75:0.60:125
chr1	12907533	rs141872266	T	C	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=46.71;MQRankSum=-1.794;QD=13.63;ReadPosRankSum=-0.284;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:39,57:0.59:96
chr1	12907633	rs75660350	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr1	12907762	rs57026768	T	C	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.129;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=25.574;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=2.786;QD=7.09;ReadPosRankSum=0.567;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:90,55:0.38:145
chr1	12907777	rs28391533	T	C	4670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=10.901;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-6.744;QD=27.97;ReadPosRankSum=-3.006;SOR=1.489;set=HC	GT:AD:AF:DP	0/1:49,118:0.71:167
chr1	12907777	.	TCCAT	CCCAC,CCCAT	595	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=2;HapScore=1;MMLQ=28;MQ=49.37;NF=43,84;NR=8,37;PP=595,570;QD=12.7150563698;SC=AACTGTACATTCCATCATAAT;SbPval=0.99;Source=Platypus;TC=170;TCF=110;TCR=60;TR=51,121;WE=12907789;set=Platypus	GT:AF:DP	0/1:0.30:170
chr1	12907781	rs28441396	T	C	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=33.906;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-6.318;QD=12.72;ReadPosRankSum=-0.604;SOR=2.606;set=HC	GT:AD:AF:DP	0/1:113,58:0.34:171
chr1	12907798	rs150096254	A	C	2978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=21.541;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-3.718;QD=14.53;ReadPosRankSum=1.130;SOR=1.840;set=HC	GT:AD:AF:DP	0/1:127,78:0.38:205
chr1	12907802	rs138087690	CC	TT	3049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=22.730;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=-3.187;QD=14.45;ReadPosRankSum=1.378;SOR=1.847;set=HC	GT:AD:AF:DP	0/1:129,82:0.39:211
chr1	12907837	rs1736811	C	T	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:155,122:0.44:277
chr1	12907843	rs2982093	T	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=8.833;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=-8.215;QD=2.24;ReadPosRankSum=-1.331;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:252,34:0.12:286
chr1	12907848	rs140567799	G	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.041;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=4.571;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-8.035;QD=2.09;ReadPosRankSum=-0.317;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:262,34:0.11:296
chr1	12907885	rs848418	T	C	1747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-2.097;QD=5.04;ReadPosRankSum=-0.647;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:244,103:0.30:347
chr1	12908080	rs41279490	C	T	2601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-0.754;QD=4.62;ReadPosRankSum=-0.042;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:406,157:0.28:563
chr1	12908130	rs41279492	C	T	2441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-2.285;QD=4.51;ReadPosRankSum=0.207;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:388,154:0.28:542
chr1	12908236	rs1736809	G	T	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.243;MLEAC=1;MLEAF=0.500;MQ=48.29;MQRankSum=-5.655;QD=21.98;ReadPosRankSum=-1.059;SOR=1.374;set=HC	GT:AD:AF:DP	0/1:29,76:0.72:105
chr1	12908236	.	GGGAGAAA	TGGAGAAA,TGGAGAAG	705	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=19;MMLQ=24;MQ=41.73;NF=18,5;NR=69,24;PP=705,495;QD=8.5031173856;SC=GGGTTCTACGGGGAGAAACTG;SbPval=0.63;Source=Platypus;TC=116;TCF=26;TCR=90;TR=87,29;WE=12908251;WS=12908226;set=Platypus	GT:AF:DP	0/1:0.75:116
chr1	12908243	rs1736808	A	G	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.004;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.49;MQRankSum=-3.235;QD=5.18;ReadPosRankSum=0.878;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr1	12919064	rs3204790	T	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:20,51:0.72:71
chr1	12919111	rs9728577	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr1	12919173	rs9308464	A	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.647;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-0.566;QD=17.18;ReadPosRankSum=-0.345;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	12919872	rs3204798	T	G	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr1	12919891	rs75411676	G	T	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:42,87:0.67:129
chr1	12919934	rs3204805	A	G	2582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=-1.041;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:64,113:0.64:177
chr1	12920132	rs58524511	A	G	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.89;MQRankSum=-3.617;QD=26.82;ReadPosRankSum=-0.224;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr1	12920138	.	T	TCA	993.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.012;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.606;MLEAC=1;MLEAF=0.500;MQ=51.53;MQRankSum=-3.736;QD=29.23;ReadPosRankSum=-0.656;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr1	12920141	.	TGC	T	943.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.26;MQRankSum=-3.861;QD=28.60;ReadPosRankSum=-2.219;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	12920987	rs72472701	G	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	12921127	rs12139549	A	G	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:41,81:0.66:122
chr1	12921229	rs1063789	A	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	12921241	rs199970071	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	13183249	rs139566100	C	A	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=7.363;MLEAC=1;MLEAF=0.500;MQ=49.45;MQRankSum=-1.549;QD=6.25;ReadPosRankSum=-0.635;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:92,43:0.32:135
chr1	13183439	rs28713604	T	C	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	13183472	rs201921464	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:135,69:0.34:204
chr1	13183511	rs72864546	T	C	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:112,76:0.40:188
chr1	13183528	rs76937665	A	C	2375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.714;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=-1.981;QD=13.89;ReadPosRankSum=-0.772;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:108,63:0.37:171
chr1	13183532	rs77505369	CC	TT	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=5.839;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.13;MQRankSum=-2.277;QD=13.05;ReadPosRankSum=-1.303;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:108,61:0.36:169
chr1	13183567	rs78160026	C	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.123;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=22.720;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-4.038;QD=4.14;ReadPosRankSum=-2.894;SOR=2.644;set=HC	GT:AD:AF:DP	0/1:99,31:0.24:130
chr1	13183573	rs76669210	G	T	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.739;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=69.516;MLEAC=1;MLEAF=0.500;MQ=53.53;MQRankSum=-7.837;QD=10.72;ReadPosRankSum=-1.312;SOR=4.661;set=HC	GT:AD:AF:DP	0/1:74,43:0.37:117
chr1	13183578	rs115194400	G	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.477;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.659;MLEAC=1;MLEAF=0.500;MQ=53.11;MQRankSum=0.574;QD=0.68;ReadPosRankSum=-0.999;SOR=0.259;set=HC	GT:AD:AF:DP	0/1:86,16:0.16:102
chr1	13183631	rs80009603	A	T	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=15.406;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-6.057;QD=3.48;ReadPosRankSum=-3.243;SOR=3.046;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr1	13183634	rs2982225	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=22.445;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-6.197;QD=2.67;ReadPosRankSum=-3.789;SOR=4.404;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr1	13183780	rs116484938	A	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:69,17:0.20:86
chr1	13183966	rs80025711	G	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr1	13183973	rs3929664	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=12.524;MLEAC=1;MLEAF=0.500;MQ=51.07;MQRankSum=-1.304;QD=1.06;ReadPosRankSum=-0.861;SOR=2.649;set=HC	GT:AD:AF:DP	0/1:79,13:0.14:92
chr1	13695974	rs142734546	T	C	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.71;QD=19.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	13802325	rs3013105	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	13802437	rs3013106	G	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,63:0.80:79
chr1	13802617	rs79959055	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr1	13910417	rs355025	C	T	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:48,162:0.77:210
chr1	13910741	rs150088145	CGGA	C	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	13936822	rs404658	G	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr1	13937089	rs2487643	G	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr1	13940864	rs2486188	C	G	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	14042309	rs7411176	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	14057425	rs35643856	G	GA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.641;QD=1.72;ReadPosRankSum=1.917;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr1	14059395	rs33969518	T	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	14096821	rs1210110	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.810;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr1	14099763	rs10803426	C	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.546;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=6.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.870;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr1	14105139	rs2076324	T	A	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.627;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=1.053;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:151,47:0.24:198
chr1	14105298	rs1203678	G	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:148,80:0.35:228
chr1	14106394	rs2308040	A	ACTC	1205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.740;QD=8.20;ReadPosRankSum=-1.246;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:110,37:0.25:147
chr1	14109114	rs1203651	A	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:135,52:0.28:187
chr1	14143003	rs1046331	A	G	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	14149505	rs2697970	C	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	14149601	rs2697969	C	T	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	14149622	rs2697968	T	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	14220186	rs1358577	A	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:82,39:0.32:121
chr1	14507057	rs10928050	A	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=1.009;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:80,17:0.18:97
chr1	15382507	.	G	C	3814.77	.	AC=1;AF=0.500;AN=2;DP=227;set=Intersection	GT:AD:AF:DP	0/1:65,161:0.71:226
chr1	15421216	rs151218750	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr1	15427934	rs10927676	C	T	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	15427982	rs502918	G	A	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	15428358	rs477953	T	C	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	15430016	rs141475354	TATATGCAAATCA	T	4080.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:28,102:0.78:130
chr1	15438990	rs10803354	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.584;QD=0.97;ReadPosRankSum=-0.549;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:136,24:0.15:160
chr1	15439083	rs140963536	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	2292.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:15,54:0.78:69
chr1	15440831	rs74757967	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	15441029	rs34135602	T	C	1648.78	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:8,71:0.90:79
chr1	15490865	rs61561984	T	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=5.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.053;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:136,46:0.25:182
chr1	15497727	rs6429722	T	C	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	15497832	rs41307794	T	C	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=-0.978;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:15,66:0.81:81
chr1	15497844	rs10429935	T	A	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	15541537	rs3753314	C	T	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:14,57:0.80:71
chr1	15546077	rs3753313	G	A	4788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=2.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=-2.521;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:71,215:0.75:286
chr1	15573689	rs1780596	A	G	46.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	15573711	rs1752018	C	A	117.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	15573758	rs1780597	G	A	108.81	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	15573769	rs1752017	G	A	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	15573775	rs1780598	A	G	273.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	15573950	rs1780599	A	C	184.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	15574076	rs1752016	C	T	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	15578195	rs1622686	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,27:0.84:32
chr1	15616139	rs486557	G	A	4338.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:49,186:0.79:235
chr1	15616183	rs487338	T	C	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:26,136:0.84:162
chr1	15639581	rs10489962	A	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.479;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:139,36:0.21:175
chr1	15650784	rs3765354	T	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.13;ReadPosRankSum=1.539;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	15650791	rs3765355	G	C	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.57;ReadPosRankSum=1.672;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr1	15651062	rs3765356	A	G	1125.10	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:5,46:0.90:51
chr1	15653503	rs7532559	A	G	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.10;ReadPosRankSum=2.599;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:15,81:0.84:96
chr1	15653563	rs3765357	C	T	2814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=0.991;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:34,133:0.80:167
chr1	15654737	rs144888008	C	CT	540.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.736;QD=9.83;ReadPosRankSum=0.709;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr1	15668276	rs763821	G	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	15714809	.	G	C	137	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=3;HapScore=2;MGOF=664;MMLQ=28;MQ=57.06;NF=0;NR=3;PP=137;QD=57.2570708491;SC=CCCTCCCCAGGCCCTGCCCCA;SbPval=1.0;Source=Platypus;TC=6;TCF=1;TCR=5;TR=3;WE=15714817;WS=15714799;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr1	15714831	rs6669577	C	T	1172.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.324;MLEAC=2;MLEAF=1.000;MQ=67.53;MQRankSum=6.635;QD=27.27;ReadPosRankSum=0.370;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr1	15714831	.	C	CCCCTCCCTT,CCCTT	624	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=167;MMLQ=28;MQ=59.67;NF=14,15;NR=1,1;PP=124,624;QD=9.86666666667;SC=CTCCCTCCCTCCCCTCCCCAG;SbPval=0.99;Source=Platypus;TC=32;TCF=22;TCR=10;TR=15,16;WE=15714839;WS=15714821;set=Platypus	GT:AF:DP	0/1:0.47:32
chr1	15723843	rs2294490	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.316;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:100,33:0.25:133
chr1	15724033	rs2253372	A	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	15769876	rs35149641	G	GC	3704.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	15783096	rs5772641	GA	G	4095.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.610;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.28;ReadPosRankSum=2.686;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:6,196:0.97:202
chr1	15783117	rs5772642	C	CA	9493.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	15788269	rs3737696	A	C	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=27.23;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	15798451	rs182957385	G	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.530;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr1	15812432	rs6429745	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	15813751	rs2011159	C	T	7032.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	15873410	.	C	CT	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=5.319;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.282;QD=2.42;ReadPosRankSum=-2.797;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:62,28:0.31:90
chr1	15953103	rs61782440	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:62,27:0.30:89
chr1	16095305	rs139231382	A	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr1	16095316	rs2271545	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	16096893	rs12146078	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr1	16096934	rs10927851	C	T	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	16097237	rs10803398	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	16256007	rs848209	T	C	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:46,170:0.79:216
chr1	16259813	rs848210	A	G	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:39,138:0.78:177
chr1	16265422	rs848214	A	G	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:38,136:0.78:174
chr1	16271260	rs9661939	G	A	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:41,175:0.81:216
chr1	16272250	rs848217	A	G	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:31,96:0.76:127
chr1	16342237	rs1739840	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:46,16:0.26:62
chr1	16344494	rs1572381	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.419;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr1	16344625	rs945417	C	G	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.392;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr1	16344664	rs872222	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.255;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr1	16344730	rs945418	T	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=0.470;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	16345619	rs945422	T	C	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.551;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.898;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr1	16346009	rs3841842	G	GC	439.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,23:0.27:84
chr1	16351275	rs10927887	A	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.674;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr1	16352937	rs1010069	G	A	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=8.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=0.831;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:95,46:0.33:141
chr1	16353400	rs9442216	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.306;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr1	16356501	rs1805152	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.957;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:94,24:0.20:118
chr1	16356583	rs3737218	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:59,17:0.22:76
chr1	16358148	rs2015509	T	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.127;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:193,54:0.22:247
chr1	16358520	rs12131197	T	C	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:11,56:0.84:67
chr1	16358685	rs6669935	C	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.334;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:278,62:0.18:340
chr1	16358932	rs10803407	T	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.418;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:403,88:0.18:491
chr1	16359051	rs10927892	C	A	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.395;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:216,56:0.21:272
chr1	16359052	rs10927893	A	G	8243.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	16359106	rs10803408	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=11.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.301;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:93,28:0.23:121
chr1	16359123	rs9442217	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=12.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.767;SOR=0.009;set=HC	GT:AD:AF:DP	0/1:62,19:0.23:81
chr1	16359959	.	G	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.313;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	16362621	rs2009044	G	A	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	16362661	rs3978493	A	C	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-4.088;QD=0.91;ReadPosRankSum=-0.238;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:394,69:0.15:463
chr1	16370899	rs945394	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	16371067	rs2015352	G	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.228;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:139,43:0.24:182
chr1	16371932	rs6604909	A	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr1	16372003	rs6604910	G	C	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.890;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr1	16372282	rs67016480	GT	G	694.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	16373124	rs5257	A	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=4.443;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.437;QD=0.66;ReadPosRankSum=-1.450;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:200,34:0.15:234
chr1	16373199	rs35820664	CCTT	C	1628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=5.453;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.949;QD=6.22;ReadPosRankSum=0.742;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:207,55:0.21:262
chr1	16373282	rs2095540	A	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-1.948;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr1	16374533	rs2014562	G	C	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	16374590	rs2282263	C	T	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:48,110:0.70:158
chr1	16374622	rs2863440	C	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:86,31:0.26:117
chr1	16374656	rs2902490	A	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=8.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.181;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr1	16374972	rs6696349	T	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr1	16374994	rs1889788	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=51.56;MQRankSum=0.674;QD=3.86;ReadPosRankSum=0.074;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr1	16375063	rs1889789	CA	GC	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	16375132	rs12118326	C	T	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.62;ReadPosRankSum=0.114;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr1	16376191	rs7367494	C	T	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	16376230	rs59006537	A	AT	5319.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	16376232	rs59924562	A	T	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.34;QD=44.41;SOR=2.041;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	16376238	rs34589727	TC	T	4056.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	16376278	rs7365182	G	A	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	16376319	rs7368151	T	C	7343.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	16376458	rs7368166	T	C	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	16376953	rs10927895	C	T	2927.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:33,112:0.77:145
chr1	16377598	rs149762502	T	TG	3291.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:31,122:0.80:153
chr1	16377870	rs6650116	C	T	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:37,113:0.75:150
chr1	16377935	rs6650117	A	G	5293.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:85,235:0.73:320
chr1	16377999	rs6650118	CA	TG	15221.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;JOINED;set=Intersection	GT:AD:AF:DP	0/1:118,372:0.76:490
chr1	16378093	rs41269167	A	G	7975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.817;QD=32.42;ReadPosRankSum=-0.259;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:48,198:0.80:246
chr1	16378099	rs182734810	GC	CA	7897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.813;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.871;QD=33.61;ReadPosRankSum=0.200;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:48,187:0.80:235
chr1	16378215	rs5252	C	T	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:24,88:0.79:112
chr1	16378331	rs41269169	G	C	2520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.165;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-1.109;QD=32.74;ReadPosRankSum=2.183;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:11,66:0.86:77
chr1	16378339	rs41269171	C	G	2374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-1.030;QD=37.11;ReadPosRankSum=0.884;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:8,56:0.88:64
chr1	16378725	rs12140311	A	T	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:16,65:0.80:81
chr1	16378931	rs56334930	A	G	3966.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:24,103:0.81:127
chr1	16378936	rs112905730	AG	A	3920.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:20,98:0.83:118
chr1	16378938	.	G	A	3869.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=2.116;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=0.019;QD=34.86;ReadPosRankSum=1.497;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:20,91:0.82:111
chr1	16378945	rs56331467	C	T	3861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.253;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-0.243;QD=36.09;ReadPosRankSum=1.125;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:18,89:0.83:107
chr1	16378951	rs56152056	T	C	3486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-0.737;QD=35.58;ReadPosRankSum=0.933;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:15,83:0.85:98
chr1	16378954	rs56112410	G	A	3411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-0.991;QD=36.69;ReadPosRankSum=1.026;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:14,79:0.85:93
chr1	16378980	rs56327038	G	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:7,62:0.90:69
chr1	16378991	rs56361591	G	A	1928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.72;ReadPosRankSum=0.284;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,49:0.91:54
chr1	16378998	rs55874146	T	C	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.70;ReadPosRankSum=0.422;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,43:0.90:48
chr1	16380196	rs5253	T	C	9214.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	16380243	rs2275166	A	G	8298.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.60;QD=41.91;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	16380252	rs2275167	C	T	7707.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.46;QD=45.88;SOR=1.725;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	16381718	rs1414498	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.997;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	16381722	rs12691552	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=1.341;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	16381792	rs12047858	T	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:62,22:0.26:84
chr1	16381816	rs12029508	C	T	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.435;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:94,30:0.24:124
chr1	16382086	rs2297727	C	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=7.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.354;SOR=1.634;set=HC	GT:AD:AF:DP	0/1:117,20:0.15:137
chr1	16382730	rs12030469	C	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.798;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.335;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:83,17:0.17:100
chr1	16382791	rs12023153	G	C	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-2.345;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:217,55:0.20:272
chr1	16382827	rs77508204	CTCT	C	2612.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=0.880;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:385,89:0.19:474
chr1	16382831	rs61769890	T	A	2659.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=0.810;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:389,90:0.19:479
chr1	16382834	rs61769891	T	A	2662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.670;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:395,94:0.19:489
chr1	16382877	rs7517792	A	G	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.859;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:545,140:0.20:685
chr1	16383448	rs10803415	A	C	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	16383581	rs1057844	G	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.97;MQRankSum=-1.129;QD=1.21;ReadPosRankSum=-0.147;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:29,4:0.12:33
chr1	16383605	rs1057845	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.12;MQRankSum=-1.031;QD=1.49;ReadPosRankSum=-0.678;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr1	16383668	rs6660218	T	G	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	16383742	rs1057857	C	G	2785.78	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:15,117:0.89:132
chr1	16385131	rs1832151	C	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	16385797	rs3978478	C	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=0.518;QD=0.90;ReadPosRankSum=-0.145;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:73,12:0.14:85
chr1	16385980	rs3884058	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.021;QD=2.06;ReadPosRankSum=0.782;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:145,35:0.19:180
chr1	16386008	rs2863452	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-0.627;QD=2.53;ReadPosRankSum=-0.814;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:119,32:0.21:151
chr1	16386247	rs2095543	T	C	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	16386416	rs9442230	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-0.264;QD=1.51;ReadPosRankSum=-0.201;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr1	16386447	rs11576236	G	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	16386495	rs71510977	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=52.59;MQRankSum=0.668;QD=1.24;ReadPosRankSum=-0.116;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	16388556	rs2863455	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-0.941;QD=7.75;ReadPosRankSum=0.085;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	16388565	rs7524413	C	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-1.423;QD=7.20;ReadPosRankSum=-0.923;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	16388646	rs2863456	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	16388709	rs28570004	G	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	16388756	rs113174531	CACCCAT	C	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	16388766	rs3978469	C	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	16388875	rs34673312	GCCC	G	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.241;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=1.036;QD=14.37;ReadPosRankSum=2.241;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	16451767	rs3754334	G	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=2.021;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:147,40:0.21:187
chr1	16456176	rs3768294	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr1	16458722	rs116506614	C	T	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.183;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:296,106:0.26:402
chr1	16458814	rs2291805	C	T	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.237;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:210,61:0.23:271
chr1	16459745	rs10907223	G	A	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.255;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:332,103:0.24:435
chr1	16459832	rs55655135	C	T	1623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.358;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:532,140:0.21:672
chr1	16460339	rs6669624	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.524;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr1	16460840	rs6603856	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.464;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.980;QD=3.27;ReadPosRankSum=-0.010;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr1	16464260	rs11260742	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr1	16464936	rs2291804	C	T	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.885;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.856;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:183,64:0.26:247
chr1	16525549	rs221032	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.315;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr1	16528218	rs6676143	G	T	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr1	16528233	rs221037	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.411;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr1	16528469	rs58225172	GCCTACCCTAGGGAC	GTACCCTAGGGAC,G	1742.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	1/1:1.00:40
chr1	16528472	rs200243292	TACCCTAGGGACC	T	1740.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=4.021;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	16528484	.	C	T	771	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=59.4;NF=1;NR=24;PP=771;QD=32.2308485019;SC=CCCTAGGGACCCATGTCTGCC;SbPval=0.62;Source=Platypus;TC=26;TCF=1;TCR=25;TR=25;WE=16528492;WS=16528459;set=Platypus	GT:AD:AF:DP	1/1:1,25:0.96:26
chr1	16528843	rs1693540	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	16529117	rs221039	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-1.457;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr1	16532803	rs221050	G	A	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.357;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:194,43:0.18:237
chr1	16532848	rs221051	A	G	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.470;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:260,62:0.19:322
chr1	16533022	rs221052	C	T	9429.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr1	16533085	rs34933259	A	AC	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.299;QD=3.66;ReadPosRankSum=-1.609;SOR=0.041;set=HC	GT:AD:AF:DP	0/1:72,14:0.16:86
chr1	16533096	rs221053	C	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-1.676;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr1	16533105	rs221054	G	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.532;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr1	16533817	rs170234	T	C	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr1	16534002	rs221056	C	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:84,37:0.31:121
chr1	16534255	rs221057	C	G	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.387;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:108,39:0.27:147
chr1	16534646	rs221058	C	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.404;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:154,25:0.14:179
chr1	16534730	rs221059	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.220;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:76,12:0.14:88
chr1	16543175	rs221024	A	C	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	16555882	rs12748676	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	16559541	rs3738631	C	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:13,69:0.84:82
chr1	16562968	rs6603850	C	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	16577908	rs12069239	G	C	4330.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:54,175:0.76:229
chr1	16583030	rs3830890	C	CA	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	16621183	rs1007150	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr1	16621234	rs12353958	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,61:0.80:76
chr1	16693725	rs142845497	T	TG	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.82;ReadPosRankSum=-0.484;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	16725330	rs41307763	G	A	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:45,123:0.73:168
chr1	16731510	rs525409	C	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-2.292;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:94,19:0.17:113
chr1	16731646	rs3106498	T	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	16736132	rs4661746	T	C	1094.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.130;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.47;ReadPosRankSum=0.527;SOR=0.240;set=HC	GT:AD:AF:DP	1/1:4,47:0.92:51
chr1	16736546	rs10907226	C	T	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:14,67:0.83:81
chr1	16748107	rs368358725	C	A	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.091;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=10.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=0.654;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:67,44:0.40:111
chr1	16778265	rs279782	G	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr1	16802410	rs374349957	T	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=2.390;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:154,45:0.23:199
chr1	16802890	rs696095	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	16803267	rs156846	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	16862273	rs76517011	C	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.874;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=51.34;MQRankSum=-1.626;QD=3.52;ReadPosRankSum=0.695;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:117,32:0.21:149
chr1	16862294	.	A	G	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=2.952;MLEAC=1;MLEAF=0.500;MQ=49.99;MQRankSum=-0.990;QD=4.14;ReadPosRankSum=-0.268;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:164,51:0.24:215
chr1	16862296	rs1759227	G	C	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:131,96:0.42:227
chr1	16862340	rs200564364	G	A	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.407;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=48.12;MQRankSum=-6.509;QD=2.00;ReadPosRankSum=0.717;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:379,79:0.17:458
chr1	16862454	rs71248115	T	G	14111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=1044;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=48.07;MQRankSum=-9.533;QD=13.52;ReadPosRankSum=-1.187;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:643,401:0.38:1044
chr1	16862461	rs145386412	T	A	27158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=1061;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=48.07;MQRankSum=-19.612;QD=25.60;ReadPosRankSum=1.388;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:369,692:0.65:1061
chr1	16862472	rs200621127	G	C	9001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;ClippingRankSum=0.000;DB;DP=1087;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=48.06;MQRankSum=-11.593;QD=8.28;ReadPosRankSum=2.383;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:805,282:0.26:1087
chr1	16862502	rs141629643	A	G	17313.77	.	AC=1;AF=0.500;AN=2;DB;DP=1098;set=Intersection	GT:AD:AF:DP	0/1:352,746:0.68:1098
chr1	16862566	rs77197089	G	A	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.000;DB;DP=890;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.61;MQRankSum=-4.661;QD=2.63;ReadPosRankSum=-0.520;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:708,180:0.20:888
chr1	16862708	rs1762987	T	G	2514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.426;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.60;MQRankSum=-8.144;QD=20.96;ReadPosRankSum=-2.941;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:51,69:0.57:120
chr1	16862712	rs61769538	G	T	2310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.907;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.72;MQRankSum=-8.058;QD=22.01;ReadPosRankSum=-2.514;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:48,57:0.54:105
chr1	16862714	rs61769539	T	G	2199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.568;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.75;MQRankSum=-8.035;QD=21.78;ReadPosRankSum=-2.758;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:46,55:0.54:101
chr1	16862732	.	A	G	624.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr1	16862749	.	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.22;MQRankSum=-2.604;QD=1.34;ReadPosRankSum=-1.905;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr1	16863213	rs74057444	C	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.217;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=15.288;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-10.195;QD=0.56;ReadPosRankSum=-0.434;SOR=3.615;set=HC	GT:AD:AF:DP	0/1:114,10:0.08:124
chr1	16863229	rs114249125	C	T	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=37.733;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-11.854;QD=2.09;ReadPosRankSum=-1.835;SOR=5.323;set=HC	GT:AD:AF:DP	0/1:142,19:0.12:161
chr1	16863233	rs115519831	A	C	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.831;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=40.703;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-12.076;QD=2.42;ReadPosRankSum=-1.715;SOR=5.494;set=HC	GT:AD:AF:DP	0/1:146,20:0.12:166
chr1	16863238	rs71642021	T	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.273;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=49.086;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-12.520;QD=4.68;ReadPosRankSum=-2.221;SOR=5.835;set=HC	GT:AD:AF:DP	0/1:151,24:0.14:175
chr1	16863257	.	A	G	1016.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=37.005;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-10.566;QD=4.12;ReadPosRankSum=-2.403;SOR=3.218;set=HC	GT:AD:AF:DP	0/1:208,39:0.16:247
chr1	16863258	rs140926795	C	A	431.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.941;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=24.939;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-7.620;QD=1.71;ReadPosRankSum=-4.691;SOR=2.830;set=HC	GT:AD:AF:DP	0/1:224,28:0.11:252
chr1	16863259	rs114741004	T	G	2341.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.454;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=72.129;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-14.139;QD=9.26;ReadPosRankSum=-5.619;SOR=3.777;set=HC	GT:AD:AF:DP	0/1:182,71:0.28:253
chr1	16863278	rs185275717	C	T	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:186,158:0.46:344
chr1	16863304	rs61769542	T	C	8315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=15.057;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-12.353;QD=18.60;ReadPosRankSum=-2.936;SOR=1.446;set=HC	GT:AD:AF:DP	0/1:235,212:0.47:447
chr1	16863308	rs112689425	G	T	8749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=18.375;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-12.298;QD=18.86;ReadPosRankSum=-1.817;SOR=1.529;set=HC	GT:AD:AF:DP	0/1:241,223:0.48:464
chr1	16863313	rs76539488	C	T	2281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=11.082;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-8.499;QD=4.69;ReadPosRankSum=-0.147;SOR=1.484;set=HC	GT:AD:AF:DP	0/1:352,135:0.28:487
chr1	16863314	rs74927161	A	G	9138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=18.441;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-11.720;QD=18.65;ReadPosRankSum=-0.128;SOR=1.522;set=HC	GT:AD:AF:DP	0/1:249,241:0.49:490
chr1	16863328	rs61769543	T	G	8372.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:252,314:0.55:566
chr1	16863352	rs61769544	C	T	9388.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:237,370:0.61:607
chr1	16863398	rs61769545	A	C	5334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.317;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-5.730;QD=10.48;ReadPosRankSum=-1.737;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:242,267:0.52:509
chr1	16863484	rs199948789	C	A	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.025;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=-0.481;QD=4.05;ReadPosRankSum=-0.380;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:111,34:0.23:145
chr1	16946562	rs1762938	C	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	16948473	rs446948	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.606;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr1	16948474	rs2781579	C	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=0.042;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr1	16969246	rs11260857	G	A	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:181,77:0.30:258
chr1	16969381	rs9727604	C	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:213,97:0.31:310
chr1	16971948	rs2209174	C	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	16973519	rs2501762	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=6.638;MLEAC=1;MLEAF=0.500;MQ=49.82;MQRankSum=-3.259;QD=0.68;ReadPosRankSum=0.328;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:372,61:0.14:433
chr1	16973996	rs200256873	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr1	16974010	rs201140718	G	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=47.05;MQRankSum=-2.005;QD=6.04;ReadPosRankSum=-1.062;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr1	16974021	rs142740321	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=46.94;MQRankSum=-2.344;QD=1.64;ReadPosRankSum=-1.072;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr1	16974256	.	G	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.054;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=12.146;MLEAC=1;MLEAF=0.500;MQ=50.31;MQRankSum=-6.147;QD=3.19;ReadPosRankSum=0.000;SOR=3.048;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr1	16974312	rs368199873	G	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=38.095;MLEAC=1;MLEAF=0.500;MQ=54.89;MQRankSum=-8.202;QD=0.18;ReadPosRankSum=0.091;SOR=5.146;set=HC	GT:AD:AF:DP	0/1:194,22:0.10:216
chr1	16974592	rs201212576	C	T	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=5.561;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-9.668;QD=2.36;ReadPosRankSum=2.769;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:394,96:0.20:490
chr1	16974637	rs16854791	T	C	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=3.138;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-0.925;QD=2.21;ReadPosRankSum=-0.931;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:280,68:0.20:348
chr1	16974662	rs28460410	C	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=13.828;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-2.153;QD=1.20;ReadPosRankSum=0.694;SOR=1.768;set=HC	GT:AD:AF:DP	0/1:226,38:0.14:264
chr1	16974869	rs4570422	G	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr1	16975045	rs55763726	G	A	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=6.827;MLEAC=1;MLEAF=0.500;MQ=54.12;MQRankSum=-10.706;QD=2.29;ReadPosRankSum=-0.345;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:345,85:0.20:430
chr1	16975202	rs28602904	T	C	1803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.460;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-5.535;QD=2.79;ReadPosRankSum=-0.538;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:504,143:0.22:647
chr1	16975230	rs2761535	G	C	10866.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:148,463:0.76:611
chr1	16975278	rs111244008	A	ACC	2410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=8.095;MLEAC=1;MLEAF=0.500;MQ=53.02;MQRankSum=-2.256;QD=5.06;ReadPosRankSum=2.004;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:376,100:0.21:476
chr1	16975689	rs201913540	G	C	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.500;MQ=45.79;MQRankSum=-4.622;QD=8.06;ReadPosRankSum=-1.900;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:57,36:0.39:93
chr1	16976032	rs2483047	A	C	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:230,122:0.35:352
chr1	16976193	rs61772256	C	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=28.729;MLEAC=1;MLEAF=0.500;MQ=54.29;MQRankSum=-11.207;QD=0.84;ReadPosRankSum=-3.123;SOR=2.128;set=HC	GT:AD:AF:DP	0/1:346,55:0.14:401
chr1	16976528	rs376140395	G	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.84;MQRankSum=-2.131;QD=3.25;ReadPosRankSum=1.580;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr1	16976539	rs199931165	A	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=6.753;MLEAC=1;MLEAF=0.500;MQ=50.19;MQRankSum=-5.354;QD=7.09;ReadPosRankSum=1.158;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:52,32:0.38:84
chr1	16976569	rs78288272	G	A	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.29;MQRankSum=-5.387;QD=5.02;ReadPosRankSum=0.118;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:127,53:0.29:180
chr1	16976585	rs1135350	C	T	1489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.500;MQ=47.98;MQRankSum=-4.360;QD=6.13;ReadPosRankSum=0.130;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:158,85:0.35:243
chr1	16976641	rs1057417	C	T	4402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.78;MQRankSum=-5.929;QD=9.87;ReadPosRankSum=-2.150;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:320,126:0.28:446
chr1	16976649	rs1057333	C	T	4462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=47.57;MQRankSum=-6.675;QD=9.54;ReadPosRankSum=-2.230;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:333,135:0.29:468
chr1	16976679	rs1065528	G	A	8657.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:79,332:0.81:411
chr1	16976681	rs3175284	G	T	2188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=47.02;MQRankSum=-4.556;QD=5.53;ReadPosRankSum=-0.111;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:321,75:0.19:396
chr1	17017675	rs2743471	C	A	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	17022952	rs557690	C	A	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=26.36;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	17023126	rs2610633	C	G	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	17023511	rs563144	C	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	17029257	rs12125112	T	C	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	17034041	rs2743505	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17034250	rs61773400	C	G	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	17044511	rs2773185	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	17044695	rs2773186	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	17083671	rs1057420	C	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	17083685	rs3197973	C	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr1	17083778	rs28455793	C	T	664.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.696;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.48;MQRankSum=2.412;QD=31.66;ReadPosRankSum=-0.162;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	17083807	rs9286084	T	C	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.71;QD=31.85;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	17083808	rs140260478	G	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.973;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=39.71;MQRankSum=-1.531;QD=7.99;ReadPosRankSum=1.087;SOR=0.031;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	17083816	rs11260920	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.96;MQRankSum=-1.731;QD=6.67;ReadPosRankSum=1.564;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr1	17083837	rs7798	T	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.58;MQRankSum=-1.797;QD=10.15;ReadPosRankSum=1.406;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	17083872	rs61635893	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=41.67;MQRankSum=2.042;QD=10.60;ReadPosRankSum=3.163;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	17083919	rs143067724	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=29.863;MLEAC=1;MLEAF=0.500;MQ=42.45;MQRankSum=-0.283;QD=12.85;ReadPosRankSum=-0.254;SOR=4.972;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	17083929	rs138589297	A	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=38.011;MLEAC=1;MLEAF=0.500;MQ=42.14;MQRankSum=-1.132;QD=6.31;ReadPosRankSum=0.211;SOR=1.695;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	17084006	rs2446544	C	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.746;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=5.744;MLEAC=1;MLEAF=0.500;MQ=46.65;MQRankSum=-3.284;QD=6.21;ReadPosRankSum=0.743;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:104,44:0.30:148
chr1	17084670	rs199536872	A	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.03;QD=29.34;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17084732	rs199782310	G	A	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.04;MQRankSum=-0.914;QD=15.21;ReadPosRankSum=-0.075;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	17084968	rs2761533	G	C	2890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.860;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=1.714;QD=12.04;ReadPosRankSum=-0.742;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:109,131:0.55:240
chr1	17085092	.	G	A	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.964;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.48;MQRankSum=-0.168;QD=6.84;ReadPosRankSum=-1.419;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:122,76:0.38:198
chr1	17085165	rs2490828	G	C	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.51;QD=30.50;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	17085412	rs872964	C	T	2107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.789;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=16.640;MLEAC=1;MLEAF=0.500;MQ=45.71;MQRankSum=3.358;QD=9.62;ReadPosRankSum=1.622;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:111,108:0.49:219
chr1	17085427	rs2002186	T	C	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.95;QD=35.71;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	17085502	rs2329006	T	C	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.715;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=4.386;MLEAC=1;MLEAF=0.500;MQ=45.98;MQRankSum=-4.496;QD=15.65;ReadPosRankSum=0.482;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:50,84:0.63:134
chr1	17085542	rs2261754	G	A	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=48.43;MQRankSum=-1.715;QD=5.59;ReadPosRankSum=1.149;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr1	17085564	rs3851921	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr1	17085589	rs371449598	AGCGCTG	A	530.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr1	17085671	rs3863806	C	G	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.500;MQ=50.01;MQRankSum=-5.844;QD=16.96;ReadPosRankSum=1.964;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:31,26:0.46:57
chr1	17085677	rs3863805	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=50.32;MQRankSum=-5.970;QD=16.35;ReadPosRankSum=2.887;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr1	17085712	rs3863803	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr1	17085795	rs1057379	G	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=25.650;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-3.028;QD=1.46;ReadPosRankSum=1.210;SOR=2.619;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chr1	17085834	rs2005622	G	T	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	17085995	.	G	GC	1270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=5.346;MLEAC=1;MLEAF=0.500;MQ=51.29;MQRankSum=0.845;QD=19.55;ReadPosRankSum=1.644;SOR=2.196;set=HC	GT:AD:AF:DP	0/1:14,51:0.78:65
chr1	17086052	rs1057286	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.91;QD=25.78;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	17086085	rs200532237	G	GC	139.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.88;QD=27.97;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	17086941	rs28462251	C	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.298;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=36.137;MLEAC=1;MLEAF=0.500;MQ=49.91;MQRankSum=2.212;QD=2.81;ReadPosRankSum=-2.273;SOR=3.022;set=HC	GT:AD:AF:DP	0/1:160,40:0.20:200
chr1	17087072	rs79486936	G	A	3431.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:184,167:0.48:351
chr1	17087262	rs2926375	C	T	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:141,136:0.49:277
chr1	17087292	rs2179161	A	G	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=40.899;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-15.244;QD=1.66;ReadPosRankSum=-1.571;SOR=2.186;set=HC	GT:AD:AF:DP	0/1:331,37:0.10:368
chr1	17087299	rs2179162	T	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.227;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=43.951;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-15.564;QD=2.00;ReadPosRankSum=-1.061;SOR=2.192;set=HC	GT:AD:AF:DP	0/1:326,41:0.11:367
chr1	17087305	rs12046578	G	C	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.037;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=35.984;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-17.223;QD=2.00;ReadPosRankSum=-0.176;SOR=1.882;set=HC	GT:AD:AF:DP	0/1:322,43:0.12:365
chr1	17087365	rs2446556	C	G	10602.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	17087465	rs11260924	G	A	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:241,133:0.36:374
chr1	17087541	rs113982165	GGTGCT	G	3311.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:238,97:0.29:335
chr1	17087582	rs10907280	G	A	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:183,84:0.31:267
chr1	17087593	rs12145944	C	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.500;MQ=55.81;MQRankSum=-12.944;QD=3.59;ReadPosRankSum=1.280;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:191,59:0.24:250
chr1	17090902	.	A	AT	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.581;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.63;MQRankSum=-4.116;QD=3.21;ReadPosRankSum=0.553;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:115,29:0.20:144
chr1	17091129	rs61769748	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	17197595	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=37;MMLQ=24;MQ=52.19;NF=89;NR=38;PP=2962;QD=20;SC=ACAGGACTCGACGCCTTTCTT;SbPval=0.93;Source=Platypus;TC=397;TCF=234;TCR=163;TR=127;WE=17197627;WS=17197585;set=Platypus	GT:AD:AF:DP	0/1:270,127:0.32:397
chr1	17197609	rs150993810	T	C	3296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=3.160;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-15.115;QD=8.79;ReadPosRankSum=-1.792;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:275,100:0.27:375
chr1	17197610	rs200754171	G	A	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-11.343;QD=2.62;ReadPosRankSum=0.704;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:305,65:0.18:370
chr1	17197615	rs146936960	C	A	3652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=4.370;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-15.117;QD=9.66;ReadPosRankSum=-1.805;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:268,110:0.29:378
chr1	17197619	rs113661539	A	G	3684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=5.086;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=-15.096;QD=9.75;ReadPosRankSum=-0.795;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:267,111:0.29:378
chr1	17197665	rs377033452	G	T	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=12.515;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-9.055;QD=2.60;ReadPosRankSum=2.403;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:318,65:0.17:383
chr1	17197666	rs74055933	T	C	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=9.223;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-8.818;QD=6.42;ReadPosRankSum=3.320;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:263,117:0.31:380
chr1	17197690	rs72642967	T	G	6469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.899;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=28.478;MLEAC=1;MLEAF=0.500;MQ=54.75;MQRankSum=-15.247;QD=20.67;ReadPosRankSum=-0.605;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:136,177:0.57:313
chr1	17197694	rs72642969	G	A	6342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.216;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=25.430;MLEAC=1;MLEAF=0.500;MQ=55.06;MQRankSum=-14.860;QD=21.87;ReadPosRankSum=0.023;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:129,161:0.56:290
chr1	17197710	rs114564385	G	C	4720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=16.509;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-13.645;QD=20.09;ReadPosRankSum=-0.120;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:107,128:0.54:235
chr1	17197715	rs202012907	G	A	4570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.185;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=13.180;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=-13.258;QD=20.97;ReadPosRankSum=0.772;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:104,114:0.52:218
chr1	17197721	.	C	T	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=13.801;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-9.027;QD=6.98;ReadPosRankSum=-1.967;SOR=0.198;set=HC	GT:AD:AF:DP	0/1:147,44:0.23:191
chr1	17197722	.	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.04;MQRankSum=-3.372;QD=0.88;ReadPosRankSum=1.156;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:163,27:0.14:190
chr1	17197725	rs75030124	C	G	1345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.968;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=10.626;MLEAC=1;MLEAF=0.500;MQ=55.13;MQRankSum=-8.794;QD=7.35;ReadPosRankSum=-1.793;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:141,42:0.23:183
chr1	17197736	.	G	C	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=10.968;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-7.765;QD=6.88;ReadPosRankSum=-1.183;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:123,34:0.22:157
chr1	17197758	rs143100028	C	G	2416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=16.246;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-8.854;QD=21.39;ReadPosRankSum=-2.408;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:50,63:0.56:113
chr1	17197764	rs150815118	G	C	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.845;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=10.370;MLEAC=1;MLEAF=0.500;MQ=55.39;MQRankSum=-7.440;QD=17.28;ReadPosRankSum=-2.341;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:48,36:0.43:84
chr1	17197766	.	G	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=55.36;MQRankSum=-6.190;QD=5.44;ReadPosRankSum=0.937;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:82,19:0.19:101
chr1	17197771	rs139655267	G	A	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.810;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-8.108;QD=21.85;ReadPosRankSum=-1.275;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:47,49:0.51:96
chr1	17197777	rs149102001	T	G	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-7.896;QD=19.15;ReadPosRankSum=0.259;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:46,41:0.47:87
chr1	17197779	rs138448635	G	A	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.783;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.45;MQRankSum=-2.904;QD=8.57;ReadPosRankSum=0.526;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:63,23:0.27:86
chr1	17197781	.	CG	C	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=54.16;MQRankSum=-6.116;QD=5.60;ReadPosRankSum=-0.216;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr1	17198518	rs141922545	T	G	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.88;QD=24.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	17248500	rs6683035	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	17248532	rs6586566	A	G	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	17249395	rs6586567	A	G	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	17251055	rs9435703	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	17281003	rs2076606	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	17287414	rs2273113	T	C	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	17295679	rs4920574	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	17297289	rs9435656	C	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	17299014	rs6661019	A	C	632.85	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr1	17301672	rs761423	T	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	17301780	rs761422	A	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	17303589	rs2235932	C	T	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	17303792	rs4920588	C	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	17312743	rs3170740	C	T	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	17313157	rs2076605	G	A	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	17313343	rs9435659	G	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	17313654	rs761421	C	T	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	17314942	rs9435662	G	A	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	17319011	rs2076603	G	A	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	17323449	rs9435736	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	17359676	rs1022580	C	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	17371152	rs12073028	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	17371494	rs9435745	C	T	97.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	17380497	rs2746462	G	T	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	17395480	rs2076599	G	A	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	17395521	rs2076598	G	A	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	17396498	rs2076596	T	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	17396703	rs2076595	T	C	4808.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	17398066	rs875219	G	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	17398069	rs875218	T	C	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	17401283	rs3818041	C	T	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	17402116	rs3818035	G	T	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	17402135	rs3818034	T	C	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	17402159	rs3818033	G	A	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	17402255	rs3818032	C	T	7947.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	17402347	rs2647205	C	T	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	17402418	rs3818031	A	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	17405809	rs2057096	G	A	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	17405916	rs2057095	C	T	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	17405949	rs2057094	C	T	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	17406015	rs2057093	C	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	17406045	rs2057092	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	17410364	rs1883913	G	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	17418883	rs2647184	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	17418894	rs2273111	A	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr1	17419024	rs11203297	G	A	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-1.101;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:34,69:0.67:103
chr1	17419066	rs11203298	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:62,26:0.30:88
chr1	17422226	rs2076609	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-0.222;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr1	17422302	rs2076608	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.118;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:111,31:0.22:142
chr1	17431618	rs11203300	A	G	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	17431681	rs2647172	C	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=59.52;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	17550121	rs2293912	G	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=8.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.955;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr1	17550225	rs3003481	T	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	17550303	rs2293913	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:11,65:0.86:76
chr1	17551034	rs2293915	A	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,32:0.86:37
chr1	17563967	rs2977306	T	C	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:51,152:0.75:203
chr1	17564990	rs2977310	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	17570466	rs2293921	T	C	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:43,162:0.79:205
chr1	17575645	rs3763589	A	C	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:27,101:0.79:128
chr1	17586010	rs45438395	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:31,82:0.73:113
chr1	17586134	rs3750300	A	G	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:52,190:0.79:242
chr1	17588689	rs142129409	T	A	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:28,163:0.85:191
chr1	17593144	rs2272628	C	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr1	17593316	rs2272629	G	A	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:34,104:0.75:138
chr1	17597721	rs4595409	A	G	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr1	17604437	rs72646786	C	T	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:27,116:0.81:143
chr1	17657534	rs11203366	G	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.060;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:214,36:0.14:250
chr1	17660499	rs874881	G	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.684;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr1	17660697	rs1548323	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.540;SOR=0.143;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	17662639	rs2240340	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.460;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:96,28:0.23:124
chr1	17662662	rs1748033	T	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.904;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:124,31:0.20:155
chr1	17662751	rs1621005	C	G	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.136;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:130,53:0.29:183
chr1	17662804	rs1748032	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:82,33:0.29:115
chr1	17662907	rs1748031	A	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	17664770	rs1635586	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	17674402	rs2240336	C	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:111,40:0.26:151
chr1	17674537	rs2240335	C	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=2.957;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:240,67:0.22:307
chr1	17683041	rs1635567	T	C	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=0.361;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:137,58:0.30:195
chr1	17683157	rs1635566	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr1	17685174	rs2428735	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.366;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr1	17707739	rs1204898	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	17707798	rs10788668	C	T	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	17708349	rs7556072	G	A	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:11,76:0.87:87
chr1	17708528	rs61766772	G	A	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.233;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:271,69:0.20:340
chr1	17718418	rs72637462	C	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	17718671	rs10709483	AG	A	3534.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	17720391	rs6678552	G	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr1	17720439	rs6695849	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr1	17720615	rs10458537	A	C	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:26,84:0.76:110
chr1	17720686	rs34075690	AG	A	2108.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr1	17721388	rs6691485	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	17721407	rs76550244	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.81;ReadPosRankSum=-0.143;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	17721695	rs369334834	GTTT	G	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	17721721	rs147310450	TGA	T	434.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr1	17723476	rs61476146	C	CCA	965.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr1	17723739	rs12129196	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr1	17725150	.	GCC	G	779	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=16;HapScore=2;MGOF=37;MMLQ=24;MQ=54.86;NF=0;NR=19;PP=779;QD=41.4736842105;SC=TTGCTCCCCCGCCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=22;TCF=1;TCR=21;TR=19;WE=17725166;WS=17725140;set=Platypus	GT:AD:AF:DP	1/0:3,19:0.86:22
chr1	17725158	.	C	CCCACCCA	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.000;QD=29.05;ReadPosRankSum=0.921;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr1	17725358	rs2244936	C	G	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:39,176:0.82:215
chr1	17739586	rs942457	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	17739820	rs1075535	T	C	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr1	17764627	rs113663016	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr1	17914846	rs1193343	C	T	1464.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=-1.119;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr1	17929980	rs1193338	C	G	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:39,117:0.75:156
chr1	17934347	rs145133878	C	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.878;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr1	17991052	rs6695710	T	C	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	18017522	rs871087	T	C	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	18017558	rs871088	A	G	9153.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:2,359:0.99:361
chr1	18017704	rs871089	C	T	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	18021406	rs905389	T	C	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	18023290	rs2270979	C	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	18023365	rs2270978	C	T	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	18023509	rs2270977	T	C	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	18023575	rs138492452	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.439;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:134,29:0.18:163
chr1	18023690	rs2270976	A	G	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	18023997	rs3835471	G	GC	571.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;MQ=61.26;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	18434518	rs9660391	G	C	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	18434887	.	GGT	G	67	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=22;MQ=60.0;NF=0;NR=2;PP=67;QD=38.0;SC=TTTGTGCCAGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=2;WE=18434896;WS=18434877;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr1	18554345	rs61762155	T	C	5492.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:40,238:0.86:278
chr1	18554356	rs3738087	C	T	6345.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:48,276:0.85:324
chr1	18691614	rs12079178	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr1	18691665	rs41300138	G	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:25,90:0.78:115
chr1	18702988	rs10796450	T	C	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	18703544	rs10465915	G	A	3568.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:62,153:0.71:215
chr1	18704862	rs1043459	A	G	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:36,121:0.77:157
chr1	18807897	rs2992755	C	G	6864.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	18807953	rs11261022	C	A	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	18808292	rs2992753	C	A	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	18808465	rs3007718	T	A	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	18808526	rs2992752	A	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	18809896	rs2992745	A	T	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	18810344	rs2992740	G	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	18810486	rs1889862	A	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.107;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:110,20:0.15:130
chr1	18961552	rs72937278	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.213;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.602;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:89,15:0.14:104
chr1	19071179	rs140528968	GATAA	G	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=-0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.43;ReadPosRankSum=-1.215;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	19071187	.	G	GATAA	367.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.27;ReadPosRankSum=-0.943;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,12:0.92:13
chr1	19166294	rs12033832	G	A	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:29,111:0.79:140
chr1	19181015	rs34447754	G	C	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:41,151:0.79:192
chr1	19181082	rs28470550	A	C	5098.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:49,228:0.82:277
chr1	19181393	rs35874116	T	C	5184.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:89,235:0.73:324
chr1	19184077	rs68081213	A	G	4426.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:91,199:0.69:290
chr1	19184176	rs72953138	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:20,57:0.74:77
chr1	19186129	rs9701796	G	C	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	19186260	rs9700646	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.000;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr1	19186320	rs9701803	G	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	19199487	rs35255325	A	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr1	19200895	rs35657817	C	T	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:38,144:0.79:182
chr1	19201184	rs6665917	G	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.31;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	19201184	.	GGAGGCCGAGTCAGGG	CGAGGCCAAGTCAGGA,CGAGGCCGAGTCAGGG	1659	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=24;MQ=60.0;NF=2,9;NR=8,45;PP=306,1659;QD=36.9467874862;SC=AGGTTCAACAGGAGGCCGAGT;SbPval=0.5;Source=Platypus;TC=55;TCF=9;TCR=46;TR=10,54;WE=19201207;WS=19201174;set=Platypus	GT:AF:DP	0/1:0.18:55
chr1	19201191	rs74056664	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-2.162;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr1	19201956	rs2230708	A	G	4595.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	19202770	rs7550822	T	C	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	19202896	rs2230707	G	A	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	19202917	rs7550938	T	C	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.63;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	19202926	rs2230706	T	C	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	19203997	rs2230705	C	G	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	19204154	rs6426813	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.08;ReadPosRankSum=0.210;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	19204173	rs6426814	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	19205672	rs28497538	T	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:45,15:0.25:60
chr1	19208145	rs112548638	G	GGGTTGCCT	4190.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	19208944	rs28566028	A	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	19209543	rs6426611	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	19210018	rs28508407	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr1	19215834	rs941495	T	C	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	19238001	.	T	TTTTA	707.73	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	19243589	rs3748586	A	G	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:17,103:0.86:120
chr1	19282981	rs1886768	A	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	19401405	rs2281748	G	A	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.015;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:210,50:0.19:260
chr1	19403173	rs137978878	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=1.026;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:73,21:0.22:94
chr1	19408294	rs67232976	G	GC	1555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.093;QD=2.99;ReadPosRankSum=-0.786;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:423,97:0.19:520
chr1	19408380	rs12164540	T	C	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-1.247;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:199,46:0.19:245
chr1	19412464	rs2274009	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr1	19415304	rs1043899	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	19420392	rs1106839	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	19426199	rs2236377	G	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.376;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=4.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.340;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:90,25:0.22:115
chr1	19433449	rs6426677	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=-1.030;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	19440107	rs9661719	A	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	19445954	rs146523571	G	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr1	19447843	rs1044010	C	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-2.020;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr1	19448326	rs6681662	C	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.302;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr1	19448608	rs7535738	C	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	19474975	rs2296108	T	G	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.826;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-3.123;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:84,28:0.25:112
chr1	19483209	rs10799710	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.774;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr1	19486839	rs946419	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.637;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	19487656	rs3748759	T	C	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.470;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:76,28:0.27:104
chr1	19491857	rs3748757	T	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.802;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:161,42:0.21:203
chr1	19499835	rs951908	G	C	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.503;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:165,41:0.20:206
chr1	19500729	rs6694521	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,19:0.27:70
chr1	19510394	rs3762396	A	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.331;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:221,53:0.19:274
chr1	19513570	rs59833909	TTA	T	115.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,8:0.20:41
chr1	19518659	rs11588032	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr1	19519782	rs10799734	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.779;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr1	19519887	rs72651403	G	C	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.115;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:271,68:0.20:339
chr1	19549343	rs2073106	G	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.564;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:132,27:0.17:159
chr1	19554099	rs7515397	T	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	19557713	rs2275403	G	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.65;ReadPosRankSum=1.408;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr1	19564650	rs2073104	C	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.109;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:102,17:0.14:119
chr1	19565344	rs709683	C	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.135;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:125,24:0.16:149
chr1	19566296	rs2273046	T	C	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.751;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:121,40:0.25:161
chr1	19568722	rs710866	G	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	19568972	rs710865	A	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr1	19578192	rs2294942	G	A	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	19582563	rs1557133	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	19583400	rs1774075	A	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	19583734	rs4912057	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	19595137	rs2235795	C	T	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	19595892	rs6665423	G	A	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	19596124	rs2235794	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	19596156	rs6665756	G	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	19597420	rs12046875	G	T	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=-0.014;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:19,63:0.77:82
chr1	19609254	rs1738025	T	C	6604.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	19609437	rs12070508	T	C	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.205;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=42.780;MLEAC=1;MLEAF=0.500;MQ=52.26;MQRankSum=-7.526;QD=9.09;ReadPosRankSum=-1.206;SOR=5.949;set=HC	GT:AD:AF:DP	0/1:48,26:0.35:74
chr1	19609522	rs140599506	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.76;QD=28.24;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	19611241	rs1738023	T	C	13695.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr1	19615041	rs145878095	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.624;QD=1.44;ReadPosRankSum=0.635;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	19638309	rs2227295	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	19650982	rs41264065	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	19651102	rs41264067	A	G	7666.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	19651277	rs41264069	G	A	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	19651300	rs41264071	T	C	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	19651330	rs41264073	C	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	19652063	rs11558390	G	A	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	19652127	rs199660210	AGTT	A	2507.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	19652128	.	GT	G	771	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MGOF=20;MMLQ=18;MQ=60.0;NF=9;NR=26;PP=771;QD=23.429454282;SC=GCAGGGGGCAGTTGTGGGGGG;SbPval=0.48;Source=Platypus;TC=37;TCF=9;TCR=28;TR=35;WE=19652143;WS=19652116;set=Platypus	GT:AD:AF:DP	1/1:2,35:0.95:37
chr1	19652135	.	G	GGT	2507.73	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	19652684	rs41264077	G	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	19653256	rs7553611	A	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	19654023	.	A	ATCCCTCCC	344.74	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	19683355	rs112399355	C	CT	123.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.84;ReadPosRankSum=-0.061;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	19746332	rs41264091	A	T	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	19927553	rs860847	C	A	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	19934724	rs61740467	C	T	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	19948507	rs728611	A	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	19950062	rs1737428	T	C	1031.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.45;ReadPosRankSum=-0.826;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr1	19972330	rs79540600	G	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	19981451	rs3828101	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	19981791	rs2294630	A	G	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	20020993	rs4370779	AC	GT	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	20027229	.	C	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.772;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:156,50:0.24:206
chr1	20027404	rs10799834	G	A	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.542;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=6.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.750;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:165,55:0.25:220
chr1	20027423	rs10737480	T	G	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.348;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:133,45:0.25:178
chr1	20141283	rs1541184	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.295;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:113,27:0.19:140
chr1	20141528	rs1541185	C	T	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.114;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:75,32:0.30:107
chr1	20216860	rs10799593	G	A	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:21,93:0.82:114
chr1	20234258	rs10916669	G	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr1	20246987	rs11589621	T	C	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:16,79:0.83:95
chr1	20249253	rs149881596	A	AGAGAGG	3109.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:20,78:0.80:98
chr1	20305065	rs10732279	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	20395401	rs11573185	C	A	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:25,83:0.77:108
chr1	20411234	rs2020886	T	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr1	20411332	rs2020887	C	T	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,66:0.67:98
chr1	20442054	rs584367	T	C	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	20442691	rs3736979	C	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	20446170	rs11298078	GT	G	1589.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=26.06;SOR=3.150;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	20470148	rs6657574	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:32,8:0.20:40
chr1	20490518	rs6426616	T	C	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	20499168	rs2301475	T	C	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=2.136;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr1	20501442	rs10916718	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	20503710	rs10753483	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	20637374	rs10916761	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.652;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:127,22:0.15:149
chr1	20643944	rs4654851	G	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr1	20645121	.	G	A	5625.77	.	AC=1;AF=0.500;AN=2;DP=309;set=Intersection	GT:AD:AF:DP	0/1:70,237:0.77:307
chr1	20649814	rs4655194	T	C	3861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.33;ReadPosRankSum=-0.276;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:27,163:0.86:190
chr1	20656824	rs2072752	A	G	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:21,110:0.84:131
chr1	20657352	rs2072753	T	C	2383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.15;ReadPosRankSum=-1.499;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:34,105:0.76:139
chr1	20662938	rs10916769	A	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:24,90:0.79:114
chr1	20671833	rs10799629	C	A	1130.03	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:6,48:0.89:54
chr1	20671961	rs11582960	G	A	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:23,91:0.80:114
chr1	20672101	rs4655200	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chr1	20676932	rs179471	T	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	20680718	rs2072751	G	A	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=0.052;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:26,74:0.74:100
chr1	20680760	rs230180	A	G	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=-1.612;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:14,53:0.79:67
chr1	20827143	rs146877909	CA	C	1099.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr1	20829560	rs2641114	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr1	20829761	rs150868809	A	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:17,67:0.80:84
chr1	20940258	rs488991	T	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	20960230	rs45530340	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-1.172;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	20964328	rs2298298	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	20971875	rs3131712	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	20971911	rs56125389	G	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	20971980	rs11379920	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=-1.404;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	20972048	rs3131713	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	20974802	rs2298299	A	G	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	20977221	rs686658	A	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	20978832	rs6893	T	C	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	20979307	rs11428148	G	GT	3504.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	20980847	rs41307775	C	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.494;QD=3.19;ReadPosRankSum=2.245;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:78,21:0.21:99
chr1	20980880	rs607254	G	A	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:29,76:0.72:105
chr1	20981806	rs592851	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	20982631	rs4704	G	A	4190.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:58,188:0.76:246
chr1	20987873	rs537816	G	C	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	20991273	rs56070322	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.41;ReadPosRankSum=-0.832;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	20992606	rs630484	G	T	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:45,104:0.70:149
chr1	20992819	rs631357	G	C	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	21024901	rs522496	C	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	21030902	rs900039	G	T	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	21040079	rs10799661	C	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	21042300	rs554111	C	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	21043913	rs604659	T	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	21043926	rs604645	T	C	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	21044161	rs601329	A	G	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	21044219	rs601392	A	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	21050958	rs592060	C	T	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.032;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:205,58:0.22:263
chr1	21083868	rs28454031	T	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=2.403;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	21083871	rs202181668	T	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=2.403;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	21091861	rs1985278	G	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr1	21106204	rs36000785	G	GA	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.915;QD=4.96;ReadPosRankSum=0.140;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr1	21143762	rs35569463	T	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=1.282;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr1	21143770	rs376814165	TA	T	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.32;ReadPosRankSum=1.282;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	21143774	rs12126757	A	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.397;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	21143782	rs76848587	A	AAT	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.70;ReadPosRankSum=1.383;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	21167404	rs2230573	A	G	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	21175855	rs7525082	C	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	21179969	rs7542882	G	A	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	21180181	rs2305463	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr1	21188703	rs10916885	A	T	3834.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:84,197:0.70:281
chr1	21188871	rs17409373	C	A	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.581;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr1	21219050	rs6685306	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr1	21295864	rs2271115	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.256;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	21325360	rs885363	C	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.796;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr1	21327637	rs1395508	C	T	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	21377314	rs6426663	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	21502724	rs34197724	TGCC	T	992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=0.313;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:74,32:0.30:106
chr1	21502956	.	G	T	58.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	21554319	rs6426676	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	21671943	rs2072654	T	G	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=1.157;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:15,58:0.79:73
chr1	21672072	.	G	T	354.78	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr1	21751142	rs150916531	A	G	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.215;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.677;MLEAC=1;MLEAF=0.500;MQ=46.63;MQRankSum=-8.617;QD=12.54;ReadPosRankSum=1.104;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:53,53:0.50:106
chr1	21751214	rs72476501	G	A	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:187,193:0.51:380
chr1	21752682	rs71512992	G	A	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-6.352;QD=8.56;ReadPosRankSum=-0.422;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:40,33:0.45:73
chr1	21752766	rs144829292	A	G	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-6.961;QD=7.59;ReadPosRankSum=-0.037;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:50,39:0.44:89
chr1	21752782	rs140348908	T	G	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.27;MQRankSum=-6.597;QD=7.78;ReadPosRankSum=-0.495;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:45,35:0.44:80
chr1	21752830	rs139145324	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=46.95;MQRankSum=-2.952;QD=8.78;ReadPosRankSum=-0.324;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr1	21753562	rs146549873	A	C	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.16;QD=26.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	21754996	rs12024079	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.69;QD=24.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	21755055	rs12024104	C	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.22;QD=27.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	21755135	rs41302024	T	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.37;QD=26.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	21755347	rs41310392	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.44;QD=25.48;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	21755453	rs3856177	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.39;QD=31.41;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	21755539	rs3855556	C	A	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	21755756	rs56343055	G	C	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	21755867	rs7522332	A	G	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	21755906	rs3738922	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	21756008	rs3894725	G	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	21756069	rs7532750	G	A	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.47;QD=24.88;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	21795388	rs1827293	A	G	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	21799489	rs1971327	T	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	21799823	rs1971328	A	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	21800185	rs7520015	T	G	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	21801346	rs7531217	G	A	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	21804815	rs7535654	T	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	21805730	rs2316504	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	21806619	rs3820294	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.70;QD=38.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	21806621	rs3820293	T	G	184.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.70;QD=46.23;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	21806624	rs3820292	A	G	184.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.96;QD=36.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	21806667	rs12043777	C	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	21806710	rs12034222	T	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	21807367	rs201117263	TA	T	167.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.57;QD=23.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	21808159	rs71512991	G	A	2019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=47.54;MQRankSum=-4.009;QD=11.16;ReadPosRankSum=-1.826;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:81,100:0.55:181
chr1	21808207	rs146564096	A	C	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.793;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-5.858;QD=10.32;ReadPosRankSum=0.228;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:57,57:0.50:114
chr1	21808223	rs145079058	T	C	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=9.989;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=-4.535;QD=11.50;ReadPosRankSum=-0.509;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr1	21809750	rs202069483	T	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.03;QD=34.41;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	21887290	rs1767430	C	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	21889506	rs1256336	C	T	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	21889635	rs1780316	T	C	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	21889784	rs35423948	CG	C	2212.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	21890464	rs1767428	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.25;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	21900420	rs2275370	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	21900459	rs35488260	A	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	21925108	rs2794278	T	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	21926187	rs1767445	C	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	21928344	rs2275366	C	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr1	21929260	rs829368	A	G	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	21929456	rs3215988	GC	G	1289.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	21932530	rs1767443	C	A	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr1	21934667	rs829371	G	A	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	21935433	rs861212	G	T	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	21938375	rs2275364	T	G	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	21939493	rs3767113	G	C	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	21940555	rs2275363	C	T	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	21944352	rs748488	A	G	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	21946415	rs1681255	G	A	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	21948936	rs829415	G	C	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	21953436	rs829412	A	G	11643.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr1	21961339	rs10799706	A	T	8593.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	22005665	rs1059218	C	T	104.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.48;ReadPosRankSum=-0.674;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	22013561	rs829420	C	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	22013771	rs10493008	G	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr1	22016678	rs11422483	T	TA	114.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.319;QD=7.61;ReadPosRankSum=-0.611;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	22030121	rs55633304	A	G	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:22,85:0.79:107
chr1	22032472	rs11426922	A	AT	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	22050649	rs2275668	C	A	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	22063149	rs10753517	G	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr1	22082923	rs10458384	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	22082967	rs35545280	CA	C	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.564;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr1	22109370	rs10917042	G	A	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:42,120:0.74:162
chr1	22139141	rs34297508	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr1	22141206	rs10917051	A	C	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	22149935	rs897467	T	C	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.108;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:161,31:0.16:192
chr1	22157689	rs3736355	G	A	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.775;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.700;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:230,74:0.24:304
chr1	22158363	rs4654771	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.529;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	22160148	rs7547731	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.066;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:53,10:0.16:63
chr1	22168216	rs7556412	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:51,18:0.26:69
chr1	22168968	rs66533518	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr1	22174600	rs3767138	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:90,32:0.26:122
chr1	22177119	rs61777200	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.824;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	22179673	rs12049614	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-0.076;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr1	22180244	.	A	AAAAAT	1058.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.15;ReadPosRankSum=1.877;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr1	22180548	rs12117402	T	C	1345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.658;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:256,89:0.26:345
chr1	22183471	rs12024579	A	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.838;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr1	22183739	rs2305562	A	G	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.258;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:299,62:0.17:361
chr1	22186234	rs10917056	A	G	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	22191454	rs897471	G	A	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	22199081	rs2501266	A	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	22199245	rs2229482	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=4.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.931;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:92,27:0.23:119
chr1	22199821	rs2454290	G	A	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	22200067	rs2247741	A	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	22200082	rs2445136	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	22200835	rs2445135	C	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	22201331	rs2290494	C	T	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:22,106:0.83:128
chr1	22202109	rs2501265	C	T	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	22203259	rs2454295	A	G	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.923;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:77,17:0.18:94
chr1	22204630	rs7513608	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	22205408	rs2454294	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	22205466	rs2454293	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	22206649	rs989994	T	C	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	22206942	rs1874793	G	A	7284.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	22207235	rs1874792	T	C	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	22207804	rs139046040	ACCCAGGGTGGCAG	A	6218.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	22208030	rs921847	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	22211217	rs2290493	G	A	3278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.299;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:44,145:0.77:189
chr1	22211222	rs4654994	T	C	7823.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.33;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	22214127	rs2229478	A	G	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:29,92:0.76:121
chr1	22215088	rs2445140	T	C	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	22216279	rs3767141	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:8,42:0.84:50
chr1	22217108	rs2501260	G	A	15337.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr1	22303702	rs4415533	C	A	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:36,85:0.70:121
chr1	22304428	rs12074015	CC	GT	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=38.92;QD=40.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	22304463	rs12058649	A	G	218.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.08;QD=31.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	22307340	rs7528228	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	22307358	rs7528300	C	G	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	22307538	rs7528405	C	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	22310080	rs10799723	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	22310139	rs10733031	T	G	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.65;QD=45.84;SOR=1.416;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	22310145	rs10733032	C	T	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.89;QD=42.93;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	22310262	rs10733033	G	C	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	22310411	rs28468423	A	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.49;QD=45.07;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	22310411	.	AGA	GGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=49.49;NF=30;NR=45;PP=2947;QD=20;SC=CACCAAGACCAGACCTTGTAC;SbPval=0.59;Source=Platypus;TC=77;TCF=32;TCR=45;TR=75;WE=22310421;WS=22310401;set=Platypus	GT:AD:AF:DP	1/1:2,75:0.97:77
chr1	22310413	rs7549398	A	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.60;QD=44.46;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	22310662	rs6426735	G	T	18447.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:2,693:1.00:695
chr1	22310674	rs7538207	C	T	17272.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr1	22310725	rs3820287	G	C	10040.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	22310824	rs1803531	T	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	22313161	rs1803530	T	C	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.22;QD=25.78;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	22313197	rs34963341	C	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.176;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=0.536;QD=1.44;ReadPosRankSum=-0.147;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:87,18:0.17:105
chr1	22313371	rs34262568	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=14.70;ReadPosRankSum=0.038;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	22313469	rs3806296	G	C	367.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=5.740;MLEAC=2;MLEAF=1.000;MQ=39.58;MQRankSum=-0.131;QD=24.48;ReadPosRankSum=-0.552;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr1	22313521	rs71638814	G	T	499.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.191;MLEAC=2;MLEAF=1.000;MQ=49.33;MQRankSum=-0.958;QD=23.80;ReadPosRankSum=0.000;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	22315662	rs12082371	C	T	2796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=52.42;MQRankSum=-0.090;QD=16.26;ReadPosRankSum=0.570;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:98,74:0.43:172
chr1	22315666	rs55665598	G	A	2799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=52.09;MQRankSum=-0.241;QD=16.28;ReadPosRankSum=-0.052;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:97,75:0.44:172
chr1	22315710	rs12071902	G	A	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.79;MQRankSum=0.073;QD=7.71;ReadPosRankSum=-0.609;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:93,69:0.43:162
chr1	22315738	rs4655006	C	T	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.09;QD=29.06;SOR=2.152;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	22324705	rs7534936	T	C	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:34,138:0.80:172
chr1	22328279	rs12751986	C	T	4350.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:42,193:0.82:235
chr1	22329041	rs71016961	GC	G	1707.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:72,60:0.45:132
chr1	22329062	rs143337942	CC	GT	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;JOINED;set=Intersection	GT:AD:AF:DP	0/1:71,96:0.57:167
chr1	22329220	rs55638883	G	A	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:150,91:0.38:241
chr1	22329346	rs200212152	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	22329407	rs12756442	G	C	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr1	22329414	rs10917107	G	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.525;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=2.747;QD=2.29;ReadPosRankSum=1.369;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr1	22329645	rs4543768	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr1	22333595	rs3820290	G	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-5.400;QD=3.69;ReadPosRankSum=0.637;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr1	22333688	rs3820289	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr1	22336277	rs3820285	C	G	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	22336305	rs9187	C	T	3677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=1.270;QD=27.04;ReadPosRankSum=1.110;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:44,92:0.68:136
chr1	22336308	rs12908	G	A	3677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=1.251;QD=27.24;ReadPosRankSum=0.897;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:44,91:0.67:135
chr1	22336371	rs3806297	C	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr1	22405379	rs34952712	CT	C	218.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.299;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-1.928;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr1	22408106	rs2501282	G	A	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	22447148	rs12756110	G	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	22447645	rs41420150	C	CTG	2504.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	22817114	rs6659222	G	A	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:46,154:0.77:200
chr1	22818139	.	A	AT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.013;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr1	22827931	rs4655071	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	22832743	rs209732	A	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	22835677	rs209729	A	G	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	22837849	rs209727	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	22846452	rs7551801	C	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	22846709	rs209720	G	A	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	22852880	rs45502998	G	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	22902772	rs56218493	C	T	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.817;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:576,123:0.18:699
chr1	22912910	rs12034618	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr1	22913153	rs638058	T	C	5917.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:99,250:0.72:349
chr1	22913273	rs60727050	T	TGG	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=1.136;QD=14.42;ReadPosRankSum=0.671;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr1	22915753	rs606002	T	C	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:32,146:0.82:178
chr1	22915978	rs521570	A	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	22919904	rs209696	C	T	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:46,167:0.78:213
chr1	22922546	rs209692	G	A	780.89	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr1	22922560	rs209691	G	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,36:0.88:41
chr1	22922800	rs209690	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	22924418	rs12030727	T	C	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:30,100:0.77:130
chr1	22924536	rs66665740	GT	G	1833.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:14,60:0.81:74
chr1	22925292	rs664340	C	G	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	22927314	rs209702	A	G	5241.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:37,208:0.85:245
chr1	22927326	rs209701	T	G	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:36,198:0.85:234
chr1	22927753	rs7554717	C	T	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:43,149:0.78:192
chr1	22928265	rs209700	A	G	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,76:0.84:90
chr1	22928349	rs209699	A	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr1	22965438	rs172378	A	G	9704.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr1	22970642	rs15940	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=2.366;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr1	22970790	rs111257252	A	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	22970797	rs147010526	GC	G	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	22970828	rs666656	G	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	22974297	rs9434	C	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	22987958	rs10580	A	G	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	23045943	rs2869513	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.483;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:73,16:0.18:89
chr1	23101688	rs1561624	T	G	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:18,71:0.80:89
chr1	23101836	rs114369626	C	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	23107811	rs71020449	TA	T	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.666;QD=6.59;ReadPosRankSum=-0.052;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr1	23108089	rs2817904	A	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr1	23208925	rs2229872	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:32,69:0.68:101
chr1	23216712	rs309474	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.926;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr1	23219187	rs116119	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	23219493	rs309472	T	C	7568.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	23223116	rs309466	C	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.411;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.764;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:123,40:0.25:163
chr1	23233346	rs28936395	G	A	9343.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:121,402:0.77:523
chr1	23236826	rs309497	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.192;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:95,21:0.18:116
chr1	23280424	rs12048993	G	T	2465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.729;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:47,113:0.71:160
chr1	23289568	rs10799777	T	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	23291582	rs4655138	G	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	23342193	rs10917344	C	G	336.28	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr1	23342362	rs681648	A	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	23380198	rs579785	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	23385826	rs79588010	CTT	C	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=-0.538;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr1	23399932	rs967605	C	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	23405794	rs2072945	A	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	23405872	rs2072944	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	23409538	rs2235546	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,47:0.82:57
chr1	23418153	rs10799790	C	T	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	23419261	rs477717	G	A	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	23419374	rs3765407	G	T	10716.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	23419383	rs477830	C	T	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	23419855	rs1983965	T	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr1	23519506	rs202223945	A	AT	71.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:65,14:0.18:79
chr1	23637670	rs150660854	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr1	23664511	rs11586100	T	G	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	23688933	rs2849028	A	G	7543.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	23689786	.	A	AT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=2.410;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr1	23693422	rs2849025	T	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	23696152	rs665977	G	A	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	23710805	rs605468	A	G	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	23713952	rs676363	T	G	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	23720260	rs2486078	T	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.931;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-0.381;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:35,5:0.12:40
chr1	23724183	rs2275355	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:47,16:0.25:63
chr1	23735241	rs1198423	G	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	23743581	rs2156087	C	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr1	23751140	rs71514235	G	T	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.916;QD=2.85;ReadPosRankSum=2.010;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:270,73:0.21:343
chr1	23755513	rs1198430	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-3.974;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr1	23885498	rs11574	T	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	23885599	rs2067053	T	C	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:103,39:0.27:142
chr1	23954126	rs34020220	T	TAC	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.674;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr1	24018277	rs10917413	C	G	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	24021224	rs8880	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-3.086;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:151,34:0.18:185
chr1	24082269	rs61355731	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.725;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr1	24106510	rs3831910	A	AT	1699.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	24122986	rs760941	C	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.43;SOR=8.121;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	24133612	rs1018396	G	A	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	24134721	rs719400	T	C	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	24143932	rs2076344	A	G	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	24200903	rs2229586	G	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	24200921	rs2229585	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	24200969	rs2229584	T	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	24200983	rs2229583	C	T	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	24201094	rs2229581	G	C	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	24201109	rs2229580	C	T	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	24201262	rs2502993	A	G	9271.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	24201357	rs4649124	A	G	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	24201448	rs3003336	C	T	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	24201643	rs2501431	G	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	24201919	rs2502992	TT	CC	8531.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	24255844	rs71575785	C	CTATTATTATTAT	347.75	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=38.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	24288476	rs72540327	T	C	34.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=0.431;QD=11.62;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	24294249	rs146630384	C	T	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.08;QD=27.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	24298212	rs375094442	C	T	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.20;QD=26.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	24383819	rs7540491	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr1	24385331	rs79420391	G	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.171;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.264;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr1	24387822	rs7553075	T	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr1	24388371	rs4649168	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	24388417	rs11811060	A	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr1	24388679	rs3795303	T	C	512.03	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr1	24389509	rs67138023	GAA	G	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	24390717	rs41268127	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr1	24397473	rs34631595	G	GC	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	24398634	rs59491286	G	A	335.81	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr1	24400584	rs6660949	G	C	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	24400633	rs10903083	C	G	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	24406535	rs35446243	G	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.495;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:158,60:0.28:218
chr1	24416059	rs4393101	T	C	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	24434595	rs11249170	T	C	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	24447214	rs3795300	G	A	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	24447468	rs3795299	G	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	24465113	rs10903022	C	T	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	24484441	rs946671	A	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	24485518	rs10751769	T	C	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	24485813	rs4649194	T	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	24486216	.	G	GTTTTTTTTTTTTTGTTT	325.75	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=40.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	24513608	rs12094257	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=1.050;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	24513768	rs4090311	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	24668842	rs4648974	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.281;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:55,9:0.14:64
chr1	24671287	rs4648859	C	T	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-1.446;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:46,96:0.68:142
chr1	24671464	.	ACCCTCCACACCTGTGCC	A	466.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	24673247	rs6702097	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr1	24673866	rs6691722	A	G	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	24676494	rs375189686	T	C	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=1.826;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:30,105:0.78:135
chr1	24680915	rs12030057	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.295;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:113,19:0.14:132
chr1	24684116	rs7527465	G	A	680.78	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr1	24684728	rs11249092	G	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:31,97:0.76:128
chr1	24687653	rs532147	T	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	24695749	rs35671964	C	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.373;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:91,22:0.19:113
chr1	24706098	rs41311987	C	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr1	24706113	rs3765428	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.918;SOR=0.150;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr1	24706269	rs1064842	A	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=7.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.012;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:84,16:0.16:100
chr1	24706292	rs1142057	T	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=5.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.555;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr1	24706410	rs3765431	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	24706438	rs3835230	A	AG	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	24718075	rs2294520	T	C	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	24727678	rs2078445	C	T	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	24746205	rs12125143	C	T	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	24768778	rs4648863	G	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	24779855	rs2272934	T	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	24780521	rs56978150	C	CT	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=0.134;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	24782681	rs151040412	A	G	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:70,221:0.76:291
chr1	24784139	rs10903089	A	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	24784197	rs195718	T	C	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	24785393	rs2272935	C	T	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	24792617	rs195725	T	A	4871.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	24840768	rs196403	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	24859617	rs196429	G	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	24859665	rs196430	G	A	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	24861704	rs196432	G	A	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	24922129	rs10903095	G	A	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	24927561	rs4553122	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	24927625	rs4378146	C	A	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	24969973	rs376232433	AC	A	226.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.61;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr1	24989762	rs4649011	G	T	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	25098245	rs9332415	T	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr1	25098341	rs7548438	C	T	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:42,134:0.76:176
chr1	25098464	.	G	C	2794.77	.	AC=1;AF=0.500;AN=2;DP=155;set=Intersection	GT:AD:AF:DP	0/1:25,129:0.84:154
chr1	25140825	rs3890756	A	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr1	25153692	rs4649022	G	A	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	25254317	rs7517302	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chr1	25255850	rs79784290	C	G	1897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-2.171;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:475,146:0.24:621
chr1	25256444	rs71514255	G	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr1	25291010	rs6672420	A	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-1.060;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:100,21:0.17:121
chr1	25570550	rs5773124	A	AT	402.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=-1.308;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr1	25572984	rs34484514	T	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.819;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.374;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:297,58:0.16:355
chr1	25611035	rs2301153	G	C	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	25629766	rs201798270	TTCTC	T	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.01;QD=40.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	25634143	rs2427766	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;MQ=58.04;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	25678002	rs66744254	TA	T	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.781;QD=8.95;ReadPosRankSum=0.534;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	25678238	rs3093616	T	A	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	25687308	rs8876	C	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.263;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr1	25747230	rs586178	G	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr1	25780668	rs34006994	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-1.411;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr1	25780889	rs141203814	A	ATG	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.088;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr1	25780893	rs61775167	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.527;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:21,3:0.12:24
chr1	25785451	rs35530120	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.767;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr1	25889342	rs10687390	CAG	C	569.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr1	25889422	rs12096438	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.135;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr1	25889632	rs6687605	T	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.897;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr1	25889672	rs6688931	G	A	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.731;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr1	25890050	rs6661159	A	G	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.996;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:83,22:0.21:105
chr1	25890189	rs28969504	A	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.425;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:209,49:0.19:258
chr1	25893221	rs4523506	G	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr1	25893242	rs4418583	TG	CA	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;JOINED;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr1	26109237	rs12567324	A	G	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:36,93:0.72:129
chr1	26110065	rs3820514	A	G	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:66,160:0.71:226
chr1	26110143	rs3767877	G	A	6831.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:93,297:0.76:390
chr1	26127020	rs13373825	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.78;ReadPosRankSum=-0.742;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	26127425	rs6659086	G	A	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr1	26131654	rs7349185	G	A	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr1	26138136	rs760598	C	A	6787.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:70,293:0.81:363
chr1	26138262	rs760597	T	C	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:30,152:0.84:182
chr1	26139122	rs375298010	G	A	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	26139137	rs10902685	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	26139392	rs3738451	A	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr1	26139444	rs10751726	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr1	26139919	rs6676509	C	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	26140573	rs2294228	C	A	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:56,132:0.70:188
chr1	26146884	rs984412	C	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chr1	26150023	rs11247758	C	T	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:11,59:0.84:70
chr1	26152666	rs6598923	T	C	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:11,59:0.84:70
chr1	26152758	rs6598924	A	G	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:31,167:0.84:198
chr1	26310394	rs2275102	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.871;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr1	26314625	rs2257255	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr1	26349967	rs1938405	C	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-1.370;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:65,31:0.32:96
chr1	26357656	rs2736831	C	A	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.073;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:418,111:0.21:529
chr1	26357855	rs2802321	A	G	6905.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	26358752	rs5773143	T	TA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.503;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:119,26:0.18:145
chr1	26365374	rs4659404	T	G	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	26365549	rs2997452	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.073;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:102,22:0.18:124
chr1	26368122	.	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	0/1:26,112:0.81:138
chr1	26372144	rs6686190	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.383;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:61,10:0.14:71
chr1	26487940	rs3748856	A	G	8270.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	26496455	rs2232648	C	T	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	26510439	rs12733981	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr1	26511700	rs2783680	A	G	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	26524706	rs9970046	A	G	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	26524921	rs202180368	G	C	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,62:0.65:95
chr1	26527783	rs6703730	G	A	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	26528181	rs34161386	C	CTT	214.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=0.255;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr1	26529121	rs6691747	G	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	26582091	rs3795686	G	A	7638.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:91,330:0.78:421
chr1	26597435	rs4659419	G	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	26597673	rs11247894	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	26601385	rs3795685	G	A	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	26608649	rs12750420	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr1	26608782	rs34209692	C	T	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:4,53:0.93:57
chr1	26608811	.	TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	T	385.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=7.580;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.710;SOR=0.190;set=HC	GT:AD:AF:DP	0/1:100,18:0.15:118
chr1	26608814	rs6672357	A	G	1522.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=14.756;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=27.19;ReadPosRankSum=-0.555;SOR=2.596;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr1	26608825	.	TGGGGCCG	T	1660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=14.929;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=27.23;ReadPosRankSum=-0.680;SOR=2.603;set=HC	GT:AD:AF:DP	0/1:19,42:0.69:61
chr1	26608835	.	ACCGGGACCGGGACTGGG	A	1693.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=15.340;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=26.88;ReadPosRankSum=-1.269;SOR=2.687;set=HC	GT:AD:AF:DP	0/1:18,45:0.71:63
chr1	26609259	rs7522905	C	T	10128.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	26609307	rs6598952	G	T	9292.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	26610891	rs4332350	A	C	5582.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	26611971	rs35496937	T	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,11:0.22:50
chr1	26612042	rs11247898	A	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	26620846	rs3832184	C	CA	6502.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	26627478	rs2276712	T	C	16139.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr1	26629465	rs11803933	G	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	26646726	rs1071849	A	G	10925.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=44.06;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	26646730	rs17645	A	G	10851.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	26648551	rs11247913	G	C	7617.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	26650550	rs11247915	C	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:86,39:0.31:125
chr1	26654937	rs11589684	G	C	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	26655208	rs11247916	C	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=1.980;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:88,31:0.26:119
chr1	26655462	rs12057290	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.223;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr1	26655507	rs11247917	C	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr1	26662774	rs7517559	C	T	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	26662904	rs72649360	C	T	6767.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:80,281:0.78:361
chr1	26663362	rs10751735	C	T	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.522;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:132,39:0.23:171
chr1	26664219	rs4072445	T	C	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:27,74:0.73:101
chr1	26664968	rs11247919	C	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=1.751;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:67,15:0.18:82
chr1	26670444	rs36024412	G	T	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:45,120:0.73:165
chr1	26670609	rs34370465	C	T	4109.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:50,175:0.78:225
chr1	26671522	.	GAAATGAGGCATCA	G	2038.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.40;QD=46.33;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	26671538	.	AGCAC	A	2099.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=44.68;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	26671544	.	GGGGCCCTTCACGACCTCTTTCCAGGTGGGGAACA	G	2099.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.82;QD=45.65;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	26689659	rs11247932	G	A	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:36,113:0.76:149
chr1	26691174	rs11247933	C	A	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:42,122:0.74:164
chr1	26700795	rs7520030	T	C	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	26752992	rs4659441	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	26786627	rs3816539	G	A	2277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=1.976;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:35,99:0.74:134
chr1	26856462	rs11800553	T	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	26869610	rs921893	G	A	4705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=-1.048;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:34,208:0.86:242
chr1	26870730	rs1466286	C	G	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:30,97:0.76:127
chr1	26872554	rs12723936	A	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr1	26879376	rs7543005	T	C	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:113,232:0.67:345
chr1	26879792	rs4970489	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr1	26879920	rs4970490	T	C	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	26880989	rs873151	T	C	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:19,70:0.79:89
chr1	26881806	rs897641	C	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:30,91:0.75:121
chr1	26883450	rs61789126	G	C	6078.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:55,257:0.82:312
chr1	26883511	rs2229712	A	C	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-1.486;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:404,94:0.19:498
chr1	26887150	rs34062688	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr1	26887592	rs1064196	T	C	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:13,58:0.82:71
chr1	26898142	rs188158	A	G	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:35,117:0.77:152
chr1	26898956	rs282176	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	26899687	rs282178	C	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.158;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:126,42:0.25:168
chr1	26900735	rs282179	C	G	3620.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:43,137:0.76:180
chr1	26901090	rs11113	C	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr1	27210721	rs3170660	T	C	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.68;ReadPosRankSum=-0.074;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:13,51:0.80:64
chr1	27220020	rs58363686	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.83;ReadPosRankSum=1.534;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	27320356	rs6689941	T	C	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	27426796	rs4266911	T	C	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	27427041	rs4418629	T	C	10651.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr1	27428321	rs6598870	T	C	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	27435976	rs3738689	C	G	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	27480757	rs34306208	A	G	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	27609980	rs6670124	T	G	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	27610043	rs41291064	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.015;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:71,11:0.13:82
chr1	27660340	rs12758154	T	C	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	27660568	rs35771571	G	A	8193.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	27661037	rs12565684	T	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	27661755	rs71294466	T	TGTA	1967.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	27676925	rs6702341	G	A	8250.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.48;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	27679692	rs11247639	A	G	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	27679797	rs3813795	A	G	8740.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	27679954	rs1128918	G	A	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	27680292	rs8533	A	G	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	27682126	rs12742921	T	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr1	27684660	rs148843380	C	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	27686063	rs7521552	G	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	27687366	rs35733093	C	G	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	27688633	rs1138294	G	A	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	27696011	rs10218730	C	T	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	27720178	rs2504786	T	C	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:12,52:0.81:64
chr1	27875824	rs4908364	C	T	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	27876482	rs2076457	C	A	5209.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:87,234:0.73:321
chr1	27944000	rs1292089	T	A	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	27995077	rs56015130	G	T	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	28086955	rs10902671	C	A	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	28209305	rs3766398	A	G	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	28209362	rs3766399	T	C	5073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.16;ReadPosRankSum=-0.690;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:27,126:0.82:153
chr1	28209366	rs3766400	A	G	5015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.22;ReadPosRankSum=0.104;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:28,123:0.81:151
chr1	28233572	.	G	GA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.141;QD=0.66;ReadPosRankSum=-0.499;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr1	28261593	rs3737809	T	C	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.265;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.766;QD=24.80;ReadPosRankSum=0.571;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr1	28261600	rs3737808	A	C	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.819;QD=24.78;ReadPosRankSum=1.255;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr1	28261658	rs3831926	T	TG	1261.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr1	28261902	rs3737807	C	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr1	28268573	rs10902678	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	28268706	rs4908341	G	A	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=-0.023;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:18,56:0.76:74
chr1	28268829	rs138466566	T	TC	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.067;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr1	28268833	rs11386058	C	CG	1219.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr1	28268835	rs5018921	A	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	28280012	rs11577165	G	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.130;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-0.711;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:62,23:0.27:85
chr1	28282206	rs3813804	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=1.782;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr1	28282819	rs4908381	T	C	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	28290231	rs4373781	C	G	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	28369279	rs2476547	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.208;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:46,8:0.15:54
chr1	28422847	rs2989472	C	T	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=2.802;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-4.354;QD=3.28;ReadPosRankSum=1.722;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:281,82:0.23:363
chr1	28422967	rs34450732	C	CT	844.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.265;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:300,91:0.23:391
chr1	28527011	rs1049504	A	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:47,12:0.20:59
chr1	28555564	rs496700	A	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.913;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr1	28559574	rs510803	C	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.213;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:196,45:0.19:241
chr1	28562676	rs12154	A	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.757;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:84,26:0.24:110
chr1	28564252	rs8559	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.594;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:91,17:0.16:108
chr1	28564279	rs9508	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-1.545;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:111,29:0.21:140
chr1	28573226	rs546415	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.361;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:78,15:0.16:93
chr1	28595709	rs146389695	C	T	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:32,124:0.79:156
chr1	28600446	rs77408888	T	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.788;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr1	28601244	rs75746456	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.444;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	28696392	rs6703793	C	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-3.765;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr1	28764682	.	GT	G	45	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=0;MMLQ=26;MQ=60.0;NF=3;NR=0;PP=45;QD=26.0;SC=AAGAGTGCCAGTGTGAAGACA;SbPval=1.0;Source=Platypus;TC=18;TCF=15;TCR=3;TR=3;WE=28764690;WS=28764672;set=Platypus	GT:AD:AF:DP	1/0:15,3:0.17:18
chr1	28783644	rs74064847	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	28793041	rs11539548	G	A	1959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-1.691;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:332,117:0.26:449
chr1	28800277	rs36099122	C	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.475;QD=2.47;ReadPosRankSum=-0.788;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:204,48:0.19:252
chr1	28807191	rs35340518	T	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:72,29:0.29:101
chr1	28817351	rs146364664	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	28818151	rs61133686	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-1.018;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:166,28:0.14:194
chr1	28818218	.	T	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.699;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:161,36:0.18:197
chr1	28818418	rs74064862	T	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=0.122;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	28832586	rs11810945	T	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=3.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.492;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:110,33:0.23:143
chr1	28832687	rs6696931	A	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.531;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:74,13:0.15:87
chr1	28832697	rs6656720	G	A	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.253;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr1	28833834	rs41270837	T	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.011;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	28834419	rs74804093	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	28835041	rs58859638	G	A	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.404;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:133,47:0.26:180
chr1	28835270	rs148695641	CAT	C	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.324;QD=3.45;ReadPosRankSum=-0.566;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:52,10:0.16:62
chr1	28856209	rs113205744	CTG	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.319;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	28862193	rs41266193	G	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.424;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:128,28:0.18:156
chr1	28864435	rs2227977	A	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.033;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr1	28887031	rs10915245	A	G	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.243;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	29016716	rs6678913	T	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.102;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr1	29018316	rs10538696	TTTTA	T,TTTTATTTA	979.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=71;set=Intersection	GT:AF:DP	1/2:0.88,0.12:25
chr1	29019724	rs4654365	G	A	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.67;ReadPosRankSum=0.245;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr1	29037240	rs11415888	C	CT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.142;QD=8.29;ReadPosRankSum=0.359;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	29063559	rs6697540	A	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	29070609	rs3835537	A	AG	319.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	29138975	rs1042114	G	T	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	29139140	rs12133192	C	G	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.462;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:167,48:0.22:215
chr1	29189597	rs2234918	C	T	10421.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	29345009	rs5773229	C	CTT	1086.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	29345027	rs2985334	T	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	29379992	rs2788888	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr1	29385486	rs2153165	G	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr1	29475341	rs2230678	C	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	29475394	rs2230677	C	G	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	29475648	rs2230679	T	G	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	29529699	rs1062924	T	C	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	29542435	rs2640469	C	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	29542637	rs1128400	A	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	29557224	rs2640466	C	T	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	29563059	rs75011501	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	29633491	rs3835409	T	TCAGCC	108.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:31,6:0.16:37
chr1	29637136	rs2235939	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr1	29649874	rs10915252	T	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-1.584;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:86,21:0.20:107
chr1	29652040	.	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.875;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:201,35:0.15:236
chr1	29652068	rs2076618	T	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-1.734;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:224,42:0.16:266
chr1	29696060	rs56203706	T	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-2.429;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:157,43:0.21:200
chr1	29842261	rs10915168	A	T	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	31186254	rs1188405	A	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	31188089	rs1065755	C	T	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.113;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:139,48:0.26:187
chr1	31188901	rs20566	A	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-1.290;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:166,56:0.25:222
chr1	31191516	rs10914186	G	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	31196255	rs45601237	G	A	650.03	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr1	31206637	rs3795438	C	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-0.725;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr1	31206806	rs3795437	T	C	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=5.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.129;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:107,39:0.27:146
chr1	31206957	rs12404920	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	31208042	rs35351292	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.780;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:105,17:0.14:122
chr1	31215364	rs1050663	T	C	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.287;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:293,83:0.22:376
chr1	31347399	rs4949184	C	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.183;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:182,44:0.19:226
chr1	31349647	rs2491132	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.019;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr1	31351513	rs1891419	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.891;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:161,29:0.15:190
chr1	31409726	rs56387244	CCT	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.284;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr1	31415038	.	TTATATATATATA	T	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.995;QD=12.99;ReadPosRankSum=3.487;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr1	31418119	rs12142833	C	T	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.426;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:101,25:0.20:126
chr1	31426815	rs2275741	A	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.684;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr1	31445932	rs2491135	C	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=1.106;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	31465631	rs72657295	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-2.195;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	31478638	rs10580059	AAGAGAG	A	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.761;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr1	31479005	rs1337046	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	31501755	rs4949331	T	C	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.007;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:129,32:0.20:161
chr1	31654940	rs2297959	C	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	31732390	rs6425725	G	A	196.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.67;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	31732602	rs59591825	CA	C	362.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.645;QD=10.08;ReadPosRankSum=-1.345;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr1	31732892	rs2292165	G	A	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:23,102:0.82:125
chr1	31733674	rs36125997	C	A	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	31733926	rs12121460	A	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	31744168	rs3737755	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.34;ReadPosRankSum=0.246;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr1	31744505	rs113021667	A	AT	432.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.31;ReadPosRankSum=1.201;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr1	31754367	rs7513215	T	C	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:46,158:0.77:204
chr1	31754511	rs4949374	G	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.703;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr1	31761989	rs1532859	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	31762374	rs1532858	C	T	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	31764713	rs142762586	C	CAAG	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-1.081;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	31764930	rs10733007	T	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	31819407	rs34746219	A	C	236.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.62;ReadPosRankSum=-0.253;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	31821932	rs34282779	TA	T	698.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	31838909	.	ATGTGTGTGTG	A,ATG	240	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=10;MMLQ=22;MQ=60.0;NF=0,0;NR=9,9;PP=114,240;QD=13.0;SC=ATATGTATGTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=9,9;WE=31838926;WS=31838899;set=Platypus	GT:AF:DP	0/1:0.64:14
chr1	31840426	rs2271072	C	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	31882582	rs4012494	G	GGCCTCA	1773.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:8,40:0.83:48
chr1	31883295	rs6701521	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.93;ReadPosRankSum=0.075;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr1	31886163	rs12042883	C	T	5299.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:48,231:0.83:279
chr1	31886750	rs142597528	G	GTCCC	2863.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:32,70:0.69:102
chr1	31886833	rs10914377	T	C	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:44,94:0.68:138
chr1	31897493	rs1320585	A	G	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	31898132	rs4949400	T	C	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-0.173;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:303,81:0.21:384
chr1	31898162	rs4949401	C	T	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.756;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.342;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:380,86:0.18:466
chr1	31898234	rs4949402	T	C	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-1.396;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:297,76:0.20:373
chr1	31898279	rs4949403	A	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.500;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=6.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=3.011;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:187,42:0.18:229
chr1	31899684	rs10454445	A	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	31899704	rs10454446	C	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	31902418	rs10047085	A	G	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:29,105:0.78:134
chr1	31905889	rs3050461	A	ACAG	748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.387;QD=3.42;ReadPosRankSum=-0.312;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:186,33:0.15:219
chr1	31906882	rs11587589	A	G	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	31907102	rs7417775	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	31971684	rs1316427	C	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr1	31971701	rs201612393	GC	G	1656.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr1	31971707	rs35567548	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr1	31973122	rs112889748	GTGGAGTCTGTC	G	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=2.250;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:84,12:0.12:96
chr1	31973138	rs56235358	T	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.855;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:83,12:0.13:95
chr1	31973215	rs1320577	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.299;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:73,16:0.18:89
chr1	31973266	rs10753250	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=8.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=1.868;SOR=1.548;set=HC	GT:AD:AF:DP	0/1:88,13:0.13:101
chr1	31973409	rs1574105	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=10.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.587;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:108,21:0.16:129
chr1	31973440	rs1574104	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=8.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.104;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr1	31973481	rs1573837	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=1.400;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr1	32044589	.	TAGTGACAGCTGGTGTGTGTG	CAGTGAGAGCTGGTGTGTGTG,CAGTGAGAGCTGTTGTGTCTA	631	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=67;MMLQ=26;MQ=47.15;NF=10,6;NR=2,2;PP=158,631;QD=17.6223229052;SC=AGTTTAATTTTAGTGACAGCT;SbPval=0.56;Source=Platypus;TC=13;TCF=11;TCR=2;TR=12,8;WE=32044617;WS=32044579;set=Platypus	GT:AF:DP	0/1:0.92:13
chr1	32044641	.	G	A	446	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=3;HapScore=2;MGOF=66;MMLQ=26;MQ=56.1;NF=16;NR=4;PP=446;QD=24.0385606274;SC=TTCAGTTATAGTTTAATTTCA;SbPval=0.57;Source=Platypus;TC=20;TCF=16;TCR=4;TR=20;WE=32044649;WS=32044631;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	32044641	.	G	GTTTAATTTCAGTGAGAGCTGGTGTGTCTGTGTGTGTGTGTGTGATGTCTTCAGTTATAA,GTTTAATTTCAGTGAGAGCTGTTGTGTCTATGTGTGTGTGTGTGTGATGTCTTCAGTTATAA	870.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.58;QD=87.07;SOR=4.804;set=HC	GT:AD:AF:DP	1/2:0,2,8:0.20,0.80:10
chr1	32045800	.	C	CTCTCTCTCTCTCTG	74.14	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.57;QD=37.07;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	32045838	.	G	C	79	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=2;MGOF=21;MMLQ=28;MQ=56.67;NF=5;NR=3;PP=79;QD=14.2214015684;SC=GTCTCTCTCTGTCTCTCTCTC;SbPval=0.65;Source=Platypus;TC=23;TCF=14;TCR=9;TR=8;WE=32045860;WS=32045826;set=Platypus	GT:AD:AF:DP	1/0:15,8:0.35:23
chr1	32052145	rs45611233	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	32084904	rs1056526	C	T	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.110;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:184,53:0.22:237
chr1	32086912	rs2280386	A	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	32092525	rs2271933	A	G	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.252;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:160,40:0.20:200
chr1	32092605	rs1056527	G	A	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:15,58:0.79:73
chr1	32092735	rs2176807	T	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=1.340;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr1	32092918	rs141988488	T	TTCC	1412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.969;QD=6.09;ReadPosRankSum=0.800;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:184,48:0.21:232
chr1	32096265	rs1061770	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	32100551	rs3835520	GA	G	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.859;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:129,31:0.19:160
chr1	32119347	rs67961612	AACAC	A	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-0.768;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr1	32119431	rs3817398	T	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.229;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr1	32126135	rs41263967	C	T	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:40,134:0.77:174
chr1	32127911	rs2271927	C	T	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:23,195:0.89:218
chr1	32127953	rs2271928	G	A	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:22,177:0.89:199
chr1	32128283	rs1568396	C	G	595.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;MQRankSum=0.000;QD=21.25;ReadPosRankSum=-0.513;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr1	32131163	rs1356803	C	G	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=6.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.138;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:351,110:0.24:461
chr1	32133737	rs2292988	C	T	1933.78	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:8,78:0.91:86
chr1	32134491	rs2271929	C	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.245;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:95,34:0.26:129
chr1	32136168	rs2292990	G	C,T	2830.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=122;set=Intersection	GT:AF:DP	1/2:0.15,0.84:122
chr1	32140733	rs2292993	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr1	32145009	rs4949461	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	32146425	rs11590964	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.567;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr1	32148571	rs10737358	A	G	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	32155284	rs2297682	T	C	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.711;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:189,42:0.18:231
chr1	32155911	rs6425780	G	T	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr1	32155929	rs2297681	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.393;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr1	32156722	rs10914467	G	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:90,33:0.27:123
chr1	32156869	rs10798884	A	T	12776.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr1	32157531	rs2297676	T	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.972;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:193,50:0.21:243
chr1	32158374	rs3818788	T	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=7.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-1.157;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:177,45:0.20:222
chr1	32159588	rs2275097	A	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.147;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr1	32160918	rs6656079	A	G	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.538;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:158,43:0.21:201
chr1	32162810	rs41263973	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.191;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:120,40:0.25:160
chr1	32163950	rs2297674	G	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.827;SOR=1.344;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr1	32165495	rs2228552	G	T	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.708;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:103,30:0.23:133
chr1	32167526	rs1815465	G	C	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	32193647	rs1127100	T	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.479;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:162,41:0.20:203
chr1	32266026	rs552124	A	G	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.046;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:133,30:0.18:163
chr1	32279629	rs6669563	G	A	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:21,66:0.76:87
chr1	32280610	rs6664445	T	C	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	32646722	.	T	TA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.729;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	32658062	rs79952364	G	GGT	3155.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:9,82:0.90:91
chr1	32740296	rs142674890	A	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr1	32860161	rs547329	T	C	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	33065947	rs704886	G	C	8102.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	33117071	rs583114	T	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	33127730	rs1085416	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	33133968	rs2762904	T	C	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	33134774	rs359955	A	C	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	33134989	rs359956	A	G	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	33160878	rs360042	C	T	6715.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	33161212	rs360041	T	C	14529.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr1	33233323	rs360523	A	G	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	33234136	rs360522	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	33234153	rs3737993	G	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	33235626	rs3737995	G	A	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	33236483	rs138055320	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=4.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.084;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:155,41:0.21:196
chr1	33276424	rs4951787	G	A	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	33293748	rs10753266	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	33299816	rs4951773	A	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	33318561	rs702836	T	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	33318634	rs785274	G	A	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	33330432	rs1284368	A	G	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	33430102	rs113840389	T	G	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	33476353	rs66599471	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-5.012;QD=3.20;ReadPosRankSum=2.261;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr1	33476385	rs76881767	C	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-6.574;QD=3.19;ReadPosRankSum=0.627;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:69,12:0.15:81
chr1	33476387	rs201842558	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-6.663;QD=2.83;ReadPosRankSum=0.449;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr1	33476396	rs79824855	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-7.254;QD=2.20;ReadPosRankSum=-0.301;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:85,12:0.12:97
chr1	33476404	rs76230073	T	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-7.284;QD=1.48;ReadPosRankSum=-1.065;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:93,11:0.11:104
chr1	33485789	rs140580245	AACACACAC	A	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-0.542;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr1	33497070	rs1012884	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	33547768	rs1871322	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	33560338	rs804428	A	G	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	33631069	rs2306257	C	A	399.82	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	33641932	rs604941	A	G	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	33642152	rs643402	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.585;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.473;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:46,8:0.15:54
chr1	33646950	rs622407	A	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.192;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:113,33:0.23:146
chr1	33742228	rs4475712	T	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	33746163	rs10914676	T	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	33760743	rs4641276	T	C	13108.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr1	33777524	rs6679416	T	C	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:21,90:0.81:111
chr1	33778226	rs12563102	G	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	33778591	rs6664593	T	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=2.089;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	33795572	rs10914684	G	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr1	33795590	rs10914685	A	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	33796834	rs34504596	GA	G	76.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	33832865	rs6425816	A	G	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:33,161:0.83:194
chr1	33832933	rs10914692	G	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:22,79:0.78:101
chr1	33836796	rs7545416	C	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	33838165	.	T	TA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.43;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	33838167	.	T	G	52.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.59;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	33838168	.	GACCACCACCA	G	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	33944993	rs41265901	A	G	3238.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:32,133:0.81:165
chr1	33957152	rs4403594	T	G	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	33960062	rs9943259	A	G	4703.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:78,204:0.72:282
chr1	33961147	rs3795420	T	G	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr1	33985353	rs2641959	C	G	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:52,165:0.76:217
chr1	34038214	rs2641962	T	C	2905.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=1.943;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:2,113:0.98:115
chr1	34038413	rs2794602	A	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	34043169	rs11291100	TC	T	1715.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	34052272	rs16835645	C	T	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:25,80:0.76:105
chr1	34052305	rs12727575	C	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr1	34052605	rs7526990	A	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	34070826	rs12733436	G	A	898.78	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:3,33:0.92:36
chr1	34071434	rs1874044	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr1	34071525	rs1874045	C	T	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=2.112;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:22,43:0.66:65
chr1	34076550	rs6672528	T	C	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:18,4:0.18:22
chr1	34090679	rs16835683	T	C	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-2.558;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:168,39:0.19:207
chr1	34158472	rs12757315	C	T	3889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.04;ReadPosRankSum=-0.514;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:21,90:0.81:111
chr1	34158482	rs12757320	C	T	4055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.20;ReadPosRankSum=-0.578;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:23,107:0.82:130
chr1	34189957	rs11346874	AG	A	1264.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	34254108	rs34557326	C	CA	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.994;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.742;QD=10.07;ReadPosRankSum=-0.081;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr1	34270498	rs10737374	G	A	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	34276210	rs11418676	T	TA	271.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	34285342	rs17342512	G	A	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	34285381	rs11578857	C	T	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	34285995	rs3795414	G	A	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	34286189	rs3843294	A	C	1188.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=16.707;MLEAC=2;MLEAF=1.000;MQ=57.29;MQRankSum=-0.750;QD=21.61;ReadPosRankSum=2.789;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:3,52:0.95:55
chr1	34329897	rs911218	T	C	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	34330067	rs10379	A	C	8441.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	34383554	rs12124122	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	34663208	rs1382602	C	G	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	34663411	rs1414474	C	G	4108.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:54,173:0.76:227
chr1	34667863	rs12746310	C	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:44,149:0.77:193
chr1	34673586	rs58789216	A	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=1.990;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr1	34673701	rs41266413	A	C	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	34678040	rs76642169	T	G	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:30,85:0.74:115
chr1	35135315	rs2147385	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	35183838	rs683589	A	C	882.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,37:0.74:50
chr1	35184033	rs693582	C	T	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr1	35184084	rs693852	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr1	35259961	rs1764390	A	G	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.952;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-1.074;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:389,101:0.21:490
chr1	35260929	rs3543	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr1	35332926	rs1001616	G	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr1	35561510	rs2101973	G	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	35562965	rs2971408	G	A	9130.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	35563206	rs6658571	C	G	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	35576145	rs2935955	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	35925861	rs2819002	C	A	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	36030902	rs201424861	C	T	6025.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:91,261:0.74:352
chr1	36203715	rs67465242	AT	A	538.74	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.183;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.474;QD=24.49;ReadPosRankSum=-0.343;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr1	36203717	.	ATAT	A	537.74	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=3.183;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.474;QD=24.44;ReadPosRankSum=-0.286;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr1	36205166	rs577483	A	G	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	36213712	rs516992	G	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	36216835	rs535638	C	T	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	36282399	rs57835483	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.434;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr1	36282417	rs2791960	A	G	2190.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=1.350;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:1,84:0.99:85
chr1	36307412	rs5773512	CAT	C	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=-0.547;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr1	36316418	rs11403763	C	CA	836.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.400;QD=17.43;ReadPosRankSum=1.821;SOR=0.560;set=HC	GT:AD:AF:DP	1/1:4,44:0.92:48
chr1	36316571	rs4652895	A	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	36553673	rs399393	A	G	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	36563158	rs3738360	C	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	36565584	rs274753	C	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	36565617	rs274754	G	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	36602943	rs2231318	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr1	36636854	rs112601844	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:97,38:0.28:135
chr1	36645811	rs41267273	T	G	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr1	36752433	rs6425977	C	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=6.140;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.538;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:124,33:0.21:157
chr1	36762396	rs1566589	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	36767400	rs882799	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr1	36773074	rs138016197	CTT	C	3555.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:27,89:0.77:116
chr1	36773405	rs35343437	T	G	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-1.571;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:309,93:0.23:402
chr1	36773819	rs11263871	C	G	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.22;SOR=2.239;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	36788356	rs7536394	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	36814473	rs55703317	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:17,61:0.78:78
chr1	36820927	rs11263875	G	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:21,131:0.86:152
chr1	36824321	rs3795496	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.868;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:114,22:0.16:136
chr1	36884530	.	GA	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-0.589;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	36886257	rs55641251	A	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-1.267;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:101,22:0.18:123
chr1	36888302	.	CT	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=3.451;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.915;QD=1.20;ReadPosRankSum=-2.124;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr1	36921371	rs1538634	G	T	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	36926445	rs3738839	C	T	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.261;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	36927733	rs7065	G	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	37307281	rs553882	T	G	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:14,79:0.85:93
chr1	37335458	rs577094	A	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	37335485	rs509284	A	G	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.80;SOR=2.004;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	37335494	rs577813	G	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	37941662	rs41267297	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	37959450	rs215210	T	C	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	37959470	rs215211	C	G	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	37961290	.	AAAAAAAACAAAAAACAAAAAAAAAAAAAAAC	A	548.73	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr1	37967707	.	ATTGACAGAGAAGATACATG	A	2287	.	AC=2;AF=1.00;AN=2;BRF=0.03;FR=1.0000;HP=2;HapScore=1;MGOF=7;MMLQ=26;MQ=60.0;NF=0;NR=6;PP=2287;QD=393.08664541;SC=CTATCCTCTAATTGACAGAGA;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=6;WE=37967733;WS=37967697;set=Platypus	GT:AD:AF:DP	1/1:10,6:0.38:16
chr1	37975279	rs215214	C	T	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	37975312	rs2036637	T	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	37978999	rs72657778	A	C	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:46,148:0.76:194
chr1	37980444	rs140274410	G	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,38:0.84:45
chr1	38006359	rs2174769	A	G	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	38018150	rs72657793	T	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr1	38019747	rs2273013	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.056;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:106,15:0.12:121
chr1	38022452	rs2273014	C	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr1	38023148	rs72657795	T	C	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:26,81:0.76:107
chr1	38025103	rs41267309	T	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=-0.290;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr1	38030609	rs41267315	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:28,84:0.75:112
chr1	38030696	rs6619	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	38033217	rs41307894	G	C	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:26,131:0.83:157
chr1	38046920	rs2360010	G	T	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	38047062	rs112076625	C	G	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr1	38049373	rs3753372	C	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-2.353;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:82,24:0.23:106
chr1	38049552	rs6426024	C	G	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	38052799	rs11582642	C	T	944.79	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:4,35:0.90:39
chr1	38061572	rs6697632	G	T	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	38078300	rs4652964	A	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	38095685	rs41267327	C	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.426;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:63,21:0.25:84
chr1	38148765	rs684260	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.089;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:116,25:0.18:141
chr1	38148910	rs41312637	C	A	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:71,171:0.71:242
chr1	38149193	rs686083	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.694;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr1	38155265	rs586252	G	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.708;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:99,26:0.21:125
chr1	38161694	rs615530	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.685;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:81,24:0.23:105
chr1	38164724	rs557290	C	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.337;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:99,25:0.20:124
chr1	38166022	rs513826	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:37,11:0.23:48
chr1	38166327	rs661460	A	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	38169046	rs12139097	T	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.795;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr1	38174185	rs557897	G	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr1	38184316	rs609437	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.114;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:107,21:0.16:128
chr1	38184470	rs610213	C	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.597;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	38186189	rs6671088	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:157,66:0.30:223
chr1	38186294	rs1008879	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=8.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.402;SOR=1.956;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr1	38187447	rs579908	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.735;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:122,29:0.19:151
chr1	38187989	rs12123842	T	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:59,21:0.26:80
chr1	38188841	rs12121777	G	A	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	38192604	rs6699887	G	A	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	38292296	.	CT	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.915;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr1	38293992	rs9329568	C	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	38332074	rs149926262	TCTCTCACA	T	949.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr1	38353941	rs28580141	G	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.836;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr1	38423853	rs9293	G	C	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	38425629	.	CAAA	C	127.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.61;ReadPosRankSum=-1.834;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	38425724	rs17531342	T	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	38425895	rs28675056	T	C	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	38442547	rs10890216	G	A	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	38444749	rs7555461	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	38447615	rs7533079	G	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	38449910	rs11210870	T	C	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	38450367	rs6680796	A	G	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	38453576	rs10890285	A	C	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	38455389	rs3935867	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	38462898	rs4274021	T	A	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.41;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	38462905	rs12724533	C	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	38463504	rs7366048	C	T	10040.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	38464639	rs4570384	C	G	8615.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	38484665	.	GT	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.318;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr1	38488506	rs34251728	C	CT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-0.561;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:78,21:0.21:99
chr1	39325063	rs1925678	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr1	39339449	rs12127091	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:16,61:0.79:77
chr1	39340282	rs880303	C	T	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:28,150:0.84:178
chr1	39352271	rs2147914	G	T	5169.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:61,223:0.79:284
chr1	39352492	rs3790441	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr1	39361615	rs9438984	G	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:11,80:0.88:91
chr1	39381448	rs35338149	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.573;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr1	39385086	rs7522863	A	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	39457016	rs11547138	C	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	39457293	rs111311750	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.77;ReadPosRankSum=-1.812;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	39466626	rs11205525	A	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=1.200;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr1	39466786	rs10888613	C	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.509;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:123,31:0.20:154
chr1	39494666	rs35464164	C	CT	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr1	39494687	rs3768323	G	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	39550210	rs260972	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	39568249	rs6667815	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	39568765	rs2282232	T	C	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,41:0.87:47
chr1	39717566	rs2490948	T	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	39748921	rs2275188	G	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	39758993	rs6688708	C	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	39763242	rs2275187	G	A	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	39766055	rs2275186	C	T	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	39806610	rs3116396	C	T	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	39812620	rs2490944	G	T	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	39812822	rs2761764	C	A	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	39816612	rs41270817	G	A	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,65:0.77:84
chr1	39894839	rs645061	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	39914363	rs668556	G	C	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:28,96:0.77:124
chr1	39927507	rs783820	G	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=28.14;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	39929240	rs7554206	T	C	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	39957913	rs4660269	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	39958080	rs10888798	C	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	39988034	rs15733	C	T	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.30;QD=28.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	39988084	rs6525	G	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.70;QD=28.28;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	40027464	rs12755743	G	A	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:18,82:0.82:100
chr1	40092089	rs2695320	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	40096053	rs1148945	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	40098328	rs784625	T	C	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	40137754	rs2871601	G	A	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:20,61:0.75:81
chr1	40149515	rs784633	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	40149642	rs784634	G	T	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	40149870	rs113763288	C	G	928.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=7.959;MLEAC=2;MLEAF=1.000;MQ=61.24;MQRankSum=0.492;QD=37.15;ReadPosRankSum=1.180;SOR=3.418;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr1	40149870	.	CCCCGC	GCCCGC,GCCCGT	797	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=54;MMLQ=24;MQ=60.77;NF=5,3;NR=39,33;PP=10,797;QD=1.01752755789;SC=GCCCCGCCCACCCCGCCCCCA;SbPval=0.89;Source=Platypus;TC=49;TCF=9;TCR=40;TR=44,36;WE=40149883;WS=40149860;set=Platypus	GT:AF:DP	0/1:0.90:49
chr1	40149875	rs113459798	C	T	514.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=6.038;MLEAC=1;MLEAF=0.500;MQ=61.40;MQRankSum=0.782;QD=22.35;ReadPosRankSum=1.096;SOR=3.816;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr1	40149926	.	C	CCCCGGGTGCCTCGCCTCCTCCCAT	792.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=41.72;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	40150156	rs9662128	G	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:22,94:0.81:116
chr1	40150370	rs2746058	C	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	40207169	rs497333	T	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.335;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:92,27:0.23:119
chr1	40229297	rs71060328	A	AC	2544.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	40229319	rs493473	G	A	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	40229616	.	T	G	59	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=23;MQ=52.24;NF=0;NR=5;PP=59;QD=18.7542425094;SC=TCCCTGGAACTCTGCTTGTAC;SbPval=1.0;Source=Platypus;TC=20;TCF=2;TCR=18;TR=5;WE=40229624;WS=40229606;set=Platypus	GT:AD:AF:DP	1/0:15,5:0.25:20
chr1	40236074	rs230321	A	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.058;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=13.165;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-0.117;QD=0.53;ReadPosRankSum=0.090;SOR=1.936;set=HC	GT:AD:AF:DP	0/1:178,24:0.12:202
chr1	40253726	rs230328	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.941;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=8.822;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-3.765;QD=1.89;ReadPosRankSum=0.942;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr1	40253768	rs60164088	C	CA	220.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr1	40253770	rs4068800	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr1	40253786	rs230329	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-2.408;QD=1.31;ReadPosRankSum=1.616;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr1	40313018	rs75996803	C	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:10,57:0.85:67
chr1	40363054	rs3134614	G	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	40366768	rs61751008	G	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.045;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:67,23:0.26:90
chr1	40367592	rs804719	A	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	40526003	rs3122419	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	40528445	rs111329903	T	TTGTGTG	340.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	40533266	rs11207440	T	G	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	40533287	rs6665926	T	G	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	40533315	rs6665933	T	G	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=43.71;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	40533320	rs6665936	T	G	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;QD=45.58;SOR=4.534;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	40533326	rs6665937	T	G	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=45.91;SOR=4.069;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	40533347	rs6665944	T	G	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	40536074	rs58190778	C	CT	5441.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	40545964	rs3122428	T	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:3,94:0.97:97
chr1	40554958	rs61482632	C	CAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAA	241.77	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=11;set=Intersection	GT:AF:DP	1/1:1.00:2
chr1	40555321	rs3131651	C	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	40556922	rs3122439	T	C	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	40557656	rs6672053	G	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	40558256	rs4481840	C	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	40706221	.	G	C	3285.77	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:19,81:0.81:100
chr1	40706223	.	A	AC	3298.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:19,79:0.81:98
chr1	40706224	.	G	C	3285.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:19,79:0.81:98
chr1	40737516	rs6677717	T	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	40840270	rs10645094	T	TGC	478.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr1	40840272	rs28621835	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=2.287;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr1	40840296	.	TGA	AGA	286	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=35;MMLQ=28;MQ=59.0;NF=7,8;NR=3,12;PP=244,286;QD=27.8771212547;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.75;Source=Platypus;TC=66;TCF=42;TCR=24;TR=10,20;WE=40840305;WS=40840286;set=Platypus	GT:AD:AF:DP	0/1:56,10:0.15:66
chr1	40840296	.	TGA	T	286	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=35;MMLQ=28;MQ=59.0;NF=7,8;NR=3,12;PP=244,286;QD=27.8771212547;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.75;Source=Platypus;TC=66;TCF=42;TCR=24;TR=10,20;WE=40840305;WS=40840286;set=Platypus	GT:AD:AF:DP	0/1:26,20:0.43:46
chr1	40840353	rs1003710	A	G	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:27,96:0.78:123
chr1	40859213	rs35913943	CTT	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.86;ReadPosRankSum=1.383;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	40879808	rs209605	G	T	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	40881041	rs209606	C	G	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	40923019	rs2272994	G	A	5284.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:65,230:0.78:295
chr1	40945031	rs77179720	A	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr1	40955156	rs10789144	A	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.444;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr1	40955375	rs10157181	G	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	40980559	rs1134586	G	A	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:48,114:0.70:162
chr1	40980731	rs11208299	G	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:32,63:0.66:95
chr1	40998811	rs6659361	A	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr1	41007403	rs41268073	T	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr1	41101572	rs2253835	A	G	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	41107239	rs7535398	G	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.714;SOR=1.452;set=HC	GT:AD:AF:DP	0/1:89,23:0.21:112
chr1	41107360	rs491619	T	C	14291.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr1	41204569	rs1057925	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.049;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	41228898	rs4660454	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.380;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr1	41229180	rs4660455	G	A	35.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr1	41284366	rs2361660	G	C	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,50:0.74:68
chr1	41284406	rs2361659	A	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr1	41285087	rs4660468	T	C	7793.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:107,351:0.77:458
chr1	41289993	rs3767940	T	C	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.048;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:81,24:0.23:105
chr1	41296828	rs34287852	T	G	4773.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:71,208:0.75:279
chr1	41298652	rs913378	T	C	5797.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:86,256:0.75:342
chr1	41453286	rs5773721	GT	G	3217.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	41475085	rs12144160	A	G	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	41481596	rs41308248	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	41540853	rs2011981	A	T	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=44.71;SOR=1.258;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	41540861	rs2011982	T	C	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=42.79;SOR=1.252;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	41582831	rs148839315	C	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	41618442	rs213768	A	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	41949595	rs2759256	G	A	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	41976017	rs678110	C	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	41976217	rs72669005	G	A	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	41976328	rs9439043	T	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	41976345	rs140839222	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	41976529	rs11809423	C	T	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	41978566	rs2991344	T	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	41978825	rs2483689	C	G	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	41979156	rs615177	A	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	41983912	rs2810547	C	A	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=2.137;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	41990461	rs35122733	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chr1	42045747	rs35730380	T	C	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:21,106:0.83:127
chr1	42046613	rs12132697	G	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.364;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr1	42046812	rs2810565	C	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	42047208	rs17363472	C	G	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:47,153:0.77:200
chr1	42048745	rs2810566	T	C	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	42049032	rs2984694	G	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	42049140	rs2475842	C	G	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	42629040	rs2232224	A	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	42630364	rs2071499	G	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	42693597	rs343376	A	G	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	42846786	rs11210626	G	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=1.740;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr1	42880516	rs1055055	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.303;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr1	42898843	rs1034268	A	G	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	42915527	rs12142723	C	A	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	42948562	.	G	GA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.984;QD=1.11;ReadPosRankSum=0.909;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr1	43002199	rs372826618	AAG	A	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.714;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:201,24:0.11:225
chr1	43055243	rs10789417	C	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	43076555	rs201279077	CTT	C,CT	434.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;MQRankSum=0.442;QD=16.10;ReadPosRankSum=0.372;SOR=1.402;set=HC	GT:AD:AF:DP	1/2:2,12,13:0.44,0.48:27
chr1	43110276	rs7523056	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	43124701	rs6600419	A	G	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	43124859	rs3738494	C	T	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	43126733	rs3768025	G	A	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	43126766	rs3768026	C	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	43132393	rs35844708	G	GA	1542.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	43158943	rs144349068	CT	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.10;ReadPosRankSum=-0.319;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	43162182	.	G	GC	82	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=12;HapScore=2;MGOF=18;MMLQ=24;NF=0;NR=6;PP=82;QD=15.1666666667;SC=ACGCAGTTGCGCCCCCCCCCC;SbPval=1.0;Source=Platypus;TR=6;WE=43162190;WS=43162172;set=Platypus	GT:AD:AF:DP	1/0:12,6:0.33:18
chr1	43201576	rs116804195	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr1	43212431	rs4660662	A	G	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr1	43213499	rs3738499	C	T	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	43228189	rs2816593	T	A	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	43239395	rs2760075	G	A	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	43273064	rs12402142	A	T	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:14,65:0.82:79
chr1	43296173	rs33950227	C	T	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	43296195	rs33953680	C	T	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	43300663	rs4660672	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	43300921	rs4660673	C	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	43392250	rs4658	C	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	43393245	rs11282849	G	GGGTGAGAAAT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	43395635	rs2229682	C	T	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	43396414	rs11537641	G	A	8502.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	43408966	rs1385129	G	A	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=3.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.742;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:253,63:0.20:316
chr1	43409179	rs12718444	G	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:18,58:0.76:76
chr1	43409364	rs34964576	T	C	454.31	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr1	43418026	rs2297972	C	T	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.751;QD=18.06;ReadPosRankSum=0.106;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:14,54:0.79:68
chr1	43418056	rs3216016	AT	A	1792.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:14,55:0.80:69
chr1	43424519	rs11537640	T	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:64,21:0.25:85
chr1	43613786	rs519666	G	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.747;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:66,22:0.25:88
chr1	43613850	rs34514362	C	CA	58.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	43618596	rs12074551	G	A	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.092;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:120,40:0.25:160
chr1	43632462	rs368460930	C	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:109,41:0.27:150
chr1	43632536	rs7163	C	T	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.817;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.273;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:176,46:0.21:222
chr1	43632815	rs1749438	TT	GC	2164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=6.888;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.049;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:206,67:0.25:273
chr1	43632997	rs1691302	A	G	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=2.207;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:95,31:0.25:126
chr1	43636484	rs1049276	C	G	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.725;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:132,33:0.20:165
chr1	43637549	rs1691289	A	G	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-1.995;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr1	43637932	rs9519	T	C	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.432;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:279,85:0.23:364
chr1	43638410	rs1782386	G	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.304;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:73,15:0.17:88
chr1	43638457	rs1782387	T	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.289;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr1	43650741	rs598336	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.691;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr1	43652281	rs36219136	CA	C	72.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	43652369	rs6413971	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	43663376	rs513009	A	G	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	43664119	rs603560	A	G	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.246;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:119,33:0.22:152
chr1	43664218	rs603123	C	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.499;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:256,53:0.17:309
chr1	43664319	rs10711519	TA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=0.147;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:112,21:0.16:133
chr1	43665255	.	AAG	A	22	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=22;QD=25.5;SC=AGGTGAACAAAAGAGAGATGG;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=2;WE=43665264;WS=43665245;set=Platypus	GT:AD:AF:DP	0/1:12,2:0.14:14
chr1	43672636	rs11210812	T	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr1	43675467	rs2453412	G	A	5975.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	43680855	rs4233492	G	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	43681184	rs612626	C	T	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	43688743	rs11585059	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-1.200;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr1	43697968	rs3120045	G	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	43699813	rs3820588	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	43699935	rs2477561	C	T	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	43700140	rs2483688	A	G	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	43738340	rs10890247	A	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	43771016	rs3831248	TA	T	4573.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:46,147:0.76:193
chr1	43771090	rs3120044	G	A	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:14,60:0.81:74
chr1	43773033	rs2275180	A	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:21,78:0.79:99
chr1	43774437	rs1467809	G	A	609.78	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,22:0.92:24
chr1	43774495	rs2282225	G	C	1359.98	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:5,50:0.91:55
chr1	43774878	rs2282226	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-1.891;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr1	43777852	rs1999595	C	T	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	43779564	rs3120276	T	C	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:47,165:0.78:212
chr1	43779724	rs138876276	TTG	T	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=0.708;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:127,18:0.12:145
chr1	43779869	rs2991990	T	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	43782846	rs1198982	G	A	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=-1.701;SOR=1.509;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chr1	43784956	rs1199039	A	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.468;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:81,29:0.26:110
chr1	43787290	.	C	T	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DP=471;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.786;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:376,91:0.19:467
chr1	43805240	rs16830693	A	G	5201.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:77,228:0.75:305
chr1	43812075	rs1760670	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	43814864	rs839995	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr1	43825644	rs839763	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.126;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr1	43826312	rs710251	C	A	10411.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr1	43855546	rs839752	A	G	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.397;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:193,50:0.21:243
chr1	43855578	rs839753	G	C	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	43869235	rs710249	G	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.329;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr1	43886494	rs2782643	C	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=3.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.030;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:181,62:0.26:243
chr1	43888602	rs2782645	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.223;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:96,20:0.17:116
chr1	43892189	rs2782646	G	A	2071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.252;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:451,145:0.24:596
chr1	43901011	rs2039531	A	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.707;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:88,28:0.24:116
chr1	43903589	rs2782648	G	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.602;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:76,17:0.18:93
chr1	43909265	rs2255632	T	C	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=2.282;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:201,78:0.28:279
chr1	43912590	rs2782650	A	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.362;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr1	43916642	rs6954	T	C	7788.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	43917409	rs2251804	T	C	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=1.465;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:90,25:0.22:115
chr1	43917637	rs2251802	G	A	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.705;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:137,46:0.25:183
chr1	43919413	rs6692611	A	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	43998397	rs11350891	GT	G	717.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	44035352	rs1065771	C	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.584;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:101,24:0.19:125
chr1	44044468	rs11210874	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.220;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:69,16:0.19:85
chr1	44057257	rs2304353	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:83,37:0.31:120
chr1	44057668	rs7540068	G	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-3.246;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:118,25:0.17:143
chr1	44057696	rs7553297	A	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.852;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.733;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:88,16:0.15:104
chr1	44058034	rs2117316	G	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=4.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.300;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:123,35:0.22:158
chr1	44058265	rs3828151	C	A	5327.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	44064319	rs17849103	A	G	6487.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	44067859	rs12023161	A	G	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr1	44071221	rs631248	G	A	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr1	44072018	rs1065772	C	T	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.190;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:162,43:0.21:205
chr1	44072066	rs10890266	C	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.321;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:194,41:0.17:235
chr1	44072420	rs539096	A	G	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	44075227	rs517622	T	C	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	44078359	rs3791149	T	A	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-1.014;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr1	44078384	rs499257	T	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.225;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:124,38:0.23:162
chr1	44078604	rs10890267	A	G	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:54,162:0.75:216
chr1	44079411	rs603542	T	C	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.551;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:157,38:0.19:195
chr1	44083110	rs571862	C	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	44083507	rs641365	T	C	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr1	44083519	rs641351	G	A	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	44084620	rs16831024	G	T	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:19,64:0.77:83
chr1	44084739	rs1143701	C	T	6304.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	44086080	rs568639	T	C	8031.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	44086831	rs1143702	C	T	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.584;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:203,64:0.24:267
chr1	44087496	rs673485	C	T	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	44125962	rs3215843	CA	C	2253.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	44126143	rs76017264	C	T	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:26,119:0.82:145
chr1	44137257	rs586339	C	A	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	44156504	rs377631065	C	T	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.932;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:114,45:0.28:159
chr1	44280381	rs37468	A	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	44280425	rs3791064	T	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr1	44303786	rs10691786	C	CAAAAAAAAA	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.04;QD=54.62;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	44323736	rs2906465	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	44386305	rs3120802	C	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	44386615	rs3120803	A	G	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	44395786	rs2108202	C	T	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	44401384	rs2242637	A	G	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	44415415	rs2240447	C	T	10145.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	44426025	rs2301993	G	A	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	44426948	rs2906596	G	A	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr1	44432500	rs4660759	C	G	5000.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	44442521	rs12410334	A	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	44451111	.	GGGGA	G	34.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.296;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	44451112	rs200144349	GGGA	G	104.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-1.162;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	44451113	.	GGA	G	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.239;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	44451124	rs75761202	G	T	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.91;SOR=4.271;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	44457215	rs12403025	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	44457305	rs12403036	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	44457739	rs11376967	T	TC	853.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	44596379	rs34057178	CCAA	C	15163.73	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	44679556	rs803369	A	G	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	44680719	rs4660780	G	C	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	44685664	rs41270415	C	T	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:35,81:0.70:116
chr1	44686322	rs12419	T	C	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	44788398	rs161721	A	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	45088629	rs28453885	G	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr1	45166513	rs2355710	T	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	45169711	.	T	TA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.511;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr1	45170012	rs12088087	A	G	146.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	45205598	rs3820586	T	C	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	45212979	rs34903658	C	CA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.753;QD=0.82;ReadPosRankSum=-2.976;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:56,14:0.20:70
chr1	45216038	rs12566610	C	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	45218895	rs3795713	A	T	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	45223901	rs111920953	TATTAGCTG	T	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	45224998	rs4342887	A	C	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	45226084	rs1140279	G	A	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr1	45241113	rs11211031	T	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	45241285	rs12120833	C	G	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:35,117:0.77:152
chr1	45244051	rs3838955	T	TG	1538.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	45266832	rs17881698	A	G	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	45270024	rs11211036	G	C	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	45271097	rs17883049	G	A	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	45271912	rs17886118	G	A	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	45291908	rs11211040	G	A	6678.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	45292173	rs11573590	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.235;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:113,20:0.15:133
chr1	45293518	rs7525308	A	G	6047.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	45293752	rs2295997	T	C	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	45294156	rs2273940	T	C	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	45296752	rs2295998	C	T	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	45297753	rs2295999	A	G	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	45307506	rs3795720	G	A	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	45308409	rs6696675	G	A	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	45316741	.	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.712;QD=1.20;ReadPosRankSum=-1.528;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr1	45323518	.	C	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.461;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.726;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr1	45340282	rs9988451	C	T	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	45362992	rs263978	T	C	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	45443894	rs2487367	T	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	45444038	rs11556200	G	A	6361.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	45469176	rs12749251	A	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:40,120:0.75:160
chr1	45470130	rs7528534	T	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	45472798	rs71896015	TTGTGTG	TTG,T	1356.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=54;set=Intersection	GT:AF:DP	1/1:1.00:34
chr1	45474008	rs7541207	T	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	45474750	rs2275599	A	T	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	45474755	rs2275598	C	G	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	45475566	rs6429552	A	G	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	45476489	rs3806405	A	G	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	45476663	rs2298005	G	A	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=1.416;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	45479772	rs11211066	G	T	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	45479874	rs6698485	G	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	45509204	.	T	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=5.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.457;SOR=2.380;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr1	45524213	rs3738246	C	T	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	45793885	rs79702595	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.867;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:90,19:0.17:109
chr1	45796269	rs3219493	G	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	45796899	rs74318065	C	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.693;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:155,45:0.23:200
chr1	45797505	rs3219489	C	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	45798555	rs3219487	T	C	10992.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr1	45800033	rs3219485	T	C	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:19,111:0.85:130
chr1	45803729	rs141502023	G	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr1	45805452	rs77949009	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.226;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:172,42:0.20:214
chr1	45805566	rs3219468	G	C	12417.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,460:1.00:460
chr1	45805604	.	G	A	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DP=353;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.029;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:278,73:0.21:351
chr1	45805880	rs2275602	G	A	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.623;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:115,39:0.25:154
chr1	45807303	rs75691543	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr1	45808035	.	G	C	412.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr1	45808863	rs9429157	G	A	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:22,120:0.85:142
chr1	45809478	rs79964499	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-1.053;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr1	45810531	rs201686349	T	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.941;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr1	45810797	rs56323538	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-2.110;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:177,41:0.19:218
chr1	45813441	rs2298018	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	45813820	rs2153607	G	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	45864695	rs7532762	C	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	45887288	rs3790582	T	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:7,40:0.85:47
chr1	45961955	rs937290	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	45962018	rs41312018	C	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr1	45965037	.	AGATACAGCCACTGCTACAGAAGAAACAGATGCACAGGCCAATGAGCTCTGTGGAGACCCCAAGAG	A	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.14;ReadPosRankSum=-3.647;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:220,31:0.12:251
chr1	45965340	rs7546268	T	C	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	45973835	rs75126764	A	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.375;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:128,34:0.21:162
chr1	45981512	rs2356559	T	C	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:25,97:0.80:122
chr1	45984793	.	C	T	857.77	.	AC=1;AF=0.500;AN=2;DP=56;MQ=60.19;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr1	45984852	rs34857974	ATGT	A	426.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	46027355	rs512083	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.764;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr1	46032543	rs41269113	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr1	46035470	rs3748645	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:51,18:0.26:69
chr1	46049849	rs28365868	G	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.088;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:110,32:0.23:142
chr1	46065998	rs3014211	T	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.408;QD=0.87;ReadPosRankSum=1.560;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:176,30:0.15:206
chr1	46073597	rs76379164	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr1	46080147	rs117483576	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.370;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr1	46080947	rs1972410	A	C	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.334;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:148,39:0.21:187
chr1	46081940	rs2356581	T	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.739;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr1	46081960	rs2253862	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.109;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr1	46082330	rs41272133	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=1.471;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:145,25:0.15:170
chr1	46086077	rs3014246	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=9.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=1.577;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:102,18:0.15:120
chr1	46086288	rs79859939	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr1	46086329	rs11590549	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr1	46086913	rs3014245	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.214;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr1	46087879	rs3014241	A	G	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.956;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:153,41:0.21:194
chr1	46088076	rs74575174	G	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-1.552;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:138,41:0.23:179
chr1	46089225	rs3014240	C	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=9.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.454;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:158,42:0.21:200
chr1	46093869	rs114265929	T	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:9,61:0.87:70
chr1	46094027	rs1250	A	G	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	46095143	rs10159068	C	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	46095272	rs1135812	T	C	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:43,145:0.77:188
chr1	46096286	rs76002166	A	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-0.439;QD=4.50;ReadPosRankSum=1.104;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:91,37:0.29:128
chr1	46096402	rs10708598	AT	A	622.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	46120632	rs74577857	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	46124663	rs6671802	A	G	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	46156877	rs193298114	A	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=3.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.076;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:158,47:0.23:205
chr1	46159001	rs56215132	G	A	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.588;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:131,46:0.26:177
chr1	46159244	rs56220330	A	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.156;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:94,30:0.24:124
chr1	46160260	rs6658700	C	T	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:16,74:0.82:90
chr1	46165539	rs116792274	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr1	46165875	rs5773892	G	GA	854.19	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:7,47:0.87:54
chr1	46166861	rs4564187	G	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	46166950	rs117354665	G	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	46166956	rs139641704	C	CT	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	46195211	rs139068713	TAAC	T	3424.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:18,86:0.83:104
chr1	46195375	rs28375469	T	C	5369.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:57,223:0.80:280
chr1	46206540	rs28507722	A	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,54:0.77:70
chr1	46290311	rs10561161	GTA	G	3297.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:19,84:0.82:103
chr1	46347875	rs56242896	A	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-2.305;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	46347876	rs11211216	A	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=8.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=2.427;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	46347878	rs201525530	AT	A	64.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=8.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-2.242;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	46347879	rs10890362	T	A	261.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=8.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=2.304;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	46347910	rs6665193	G	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	46348229	rs11211217	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	46379518	rs4256763	A	G	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	46383020	rs41286710	C	T	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:34,109:0.76:143
chr1	46424964	rs4460582	G	A	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	46473802	rs3922887	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	46473902	rs3922886	A	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr1	46476587	rs11211247	T	G	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	46487560	rs946524	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.940;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:152,42:0.22:194
chr1	46491635	rs785478	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:33,8:0.20:41
chr1	46496709	rs925524	A	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr1	46498375	rs1622208	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr1	46511487	rs2297883	G	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.609;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.859;SOR=1.807;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr1	46521517	rs785468	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=1.407;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:156,37:0.19:193
chr1	46521559	rs785467	A	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.200;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:158,39:0.20:197
chr1	46598273	rs1707303	A	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.240;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.140;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:172,41:0.19:213
chr1	46641827	rs12030928	A	G	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:13,71:0.85:84
chr1	46646725	rs2234265	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr1	46655158	rs6659553	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	46658328	rs2292484	A	G	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr1	46658343	rs2292485	G	A	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr1	46659104	rs7527668	T	C	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:21,83:0.80:104
chr1	46659363	rs7527935	T	C	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chr1	46660295	rs2292487	T	C	5680.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:57,239:0.81:296
chr1	46660674	.	T	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=8.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-1.113;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr1	46739464	rs118091259	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr1	46739974	.	A	AT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.968;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:94,21:0.18:115
chr1	46810530	rs3737744	A	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.025;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:158,25:0.14:183
chr1	46827214	rs324414	A	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	46871986	rs324419	T	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=2.356;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:261,52:0.17:313
chr1	47013180	rs10890404	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-1.043;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:155,24:0.13:179
chr1	47013364	rs1258041	T	C	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	47014821	.	A	AAAAAG	348.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr1	47025839	rs3831020	GC	G	1056.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr1	47059934	rs1258021	T	C	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	47078637	rs4660947	T	C	10759.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr1	47080679	rs6671527	G	A	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	47099346	rs723333	C	A	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	47108828	rs736188	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	47109089	rs1745377	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr1	47110668	rs1258054	G	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	47110712	rs1258053	C	T	596.79	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr1	47110766	rs3215990	G	GC	1879.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	47118067	rs620913	G	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.658;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.426;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr1	47118096	rs2289446	C	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-2.318;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr1	47118189	rs620431	G	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.923;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:225,49:0.18:274
chr1	47123898	rs3214697	T	TA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.57;ReadPosRankSum=-0.611;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	47124204	rs34308534	C	CA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.340;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr1	47124479	rs611468	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.639;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:68,12:0.15:80
chr1	47130873	rs594118	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr1	47138444	rs616249	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	47138819	rs614486	T	G	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.954;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.121;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:430,120:0.22:550
chr1	47139103	rs1025806	C	T	1459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.235;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:299,94:0.24:393
chr1	47154272	rs2304745	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.784;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.424;SOR=0.017;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	47155462	rs2241862	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr1	47182206	rs3737731	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.014;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.466;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr1	47276728	rs2297812	G	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.371;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:133,34:0.20:167
chr1	47279403	rs4646488	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	47282703	rs4646494	G	T	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.066;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:138,38:0.22:176
chr1	47283627	rs4646496	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.432;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:167,38:0.19:205
chr1	47348988	.	T	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=3.718;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=-0.438;QD=2.28;ReadPosRankSum=2.552;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:83,21:0.20:104
chr1	47351034	rs5003006	T	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	47351052	rs5003005	A	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.37;QD=30.34;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	47395973	rs1126743	G	A	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:39,120:0.75:159
chr1	47398743	rs3890011	G	C	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:35,148:0.81:183
chr1	47399928	rs150826625	A	G	601.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=9.472;MLEAC=1;MLEAF=0.500;MQ=55.21;MQRankSum=3.312;QD=20.06;ReadPosRankSum=-0.774;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr1	47399967	rs28451040	G	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=10.447;MLEAC=1;MLEAF=0.500;MQ=53.41;MQRankSum=2.891;QD=19.58;ReadPosRankSum=-1.248;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	47400059	rs71500102	A	G	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.01;QD=30.19;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	47401424	rs2269231	A	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	47402372	.	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-4.476;QD=2.36;ReadPosRankSum=-3.639;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:59,9:0.13:68
chr1	47402375	.	G	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-4.586;QD=2.18;ReadPosRankSum=-3.106;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr1	47402487	.	TTGTGTG	T,TTG	3941.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=147;set=Intersection	GT:AF:DP	1/2:0.18,0.81:100
chr1	47403818	rs79056865	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.368;QD=1.42;ReadPosRankSum=-1.332;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:165,33:0.17:198
chr1	47427144	rs3813997	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr1	47496983	rs12041262	C	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.109;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:83,16:0.16:99
chr1	47515596	rs1393659	A	C	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.368;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-1.208;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	47571902	rs4926802	C	T	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-10.246;QD=6.74;ReadPosRankSum=0.459;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:204,58:0.22:262
chr1	47571905	rs28463559	C	T	1759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-10.271;QD=6.69;ReadPosRankSum=0.812;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:205,58:0.22:263
chr1	47571943	rs149137568	CTTT	C,CTTTT	1450.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.625;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.41;MQRankSum=-3.408;QD=8.74;ReadPosRankSum=0.972;SOR=1.050;set=HC	GT:AD:AF:DP	1/2:45,45,76:0.27,0.46:166
chr1	47571996	rs4926804	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:83,38:0.31:121
chr1	47572046	rs4926805	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr1	47581122	rs7547893	A	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.070;QD=1.62;ReadPosRankSum=0.335;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr1	47581389	rs201076003	CA	C	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr1	47582246	rs1295463	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.043;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr1	47582292	rs10890465	T	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=5.120;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.834;QD=3.08;ReadPosRankSum=0.614;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr1	47583415	rs6664496	G	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.896;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr1	47603188	rs76011927	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.484;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:137,34:0.20:171
chr1	47607851	rs2056899	A	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-9.232;QD=2.42;ReadPosRankSum=-0.584;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:159,41:0.20:200
chr1	47609400	rs76641385	C	G	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=5.171;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.445;QD=1.28;ReadPosRankSum=-0.619;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:149,29:0.16:178
chr1	47610223	rs201802480	TG	T	1716.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.500;MQ=49.93;MQRankSum=-2.862;QD=3.30;ReadPosRankSum=-0.803;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:431,89:0.17:520
chr1	47652870	rs10549554	CCTTGAG	CAG,C	1939.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AF:DP	0/1:0.79:61
chr1	47652875	rs10549555	AGC	A	2123.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.499;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.82;ReadPosRankSum=-0.097;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:13,48:0.79:61
chr1	47652877	.	CCT	ACA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=36;NR=4;PP=2944;QD=20;SC=TTCCCTTGAGCCTCAGGGGGA;SbPval=0.54;Source=Platypus;TC=62;TCF=56;TCR=6;TR=40;WE=47652887;WS=47652860;set=Platypus	GT:AD:AF:DP	1/0:22,40:0.65:62
chr1	47652879	rs60327556	T	A	2133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.38;ReadPosRankSum=-0.765;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:13,55:0.81:68
chr1	47655816	rs2248907	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	47685455	rs927462	T	C	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	47689842	rs34087210	C	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	47691568	rs145295250	GCAGA	G	2367.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:31,60:0.66:91
chr1	47717189	rs2758735	A	G	8070.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	47735280	rs2742104	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	47735551	rs140975915	T	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:124,48:0.28:172
chr1	47748129	rs149185431	G	A	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.01;ReadPosRankSum=-2.365;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:18,85:0.83:103
chr1	47753405	rs12125261	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr1	47755316	rs17103075	T	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	47770786	rs6692734	T	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	47823776	rs10666791	C	CT	59.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.97;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	47841038	rs3214951	G	GA	192.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	47841109	rs2253511	T	C	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	47842431	rs3125648	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	47882497	rs34082359	C	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.007;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:107,26:0.20:133
chr1	47883019	rs6666370	T	C	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	47883024	rs2820969	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	47904000	rs78469326	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:47,13:0.22:60
chr1	47904668	rs3046924	T	TCCGCAC	7065.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	47904909	rs2405913	G	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	48260462	.	G	GTTT	74.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=-0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.21;ReadPosRankSum=-1.309;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	48697733	rs212991	T	G	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	48697928	rs1004833	T	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	48707838	rs705430	A	G	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	48825355	rs1338314	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.33;ReadPosRankSum=1.714;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,58:0.81:72
chr1	48866684	rs140059092	TTC	T	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	48869409	rs41296157	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.48;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	48902977	rs2261674	G	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	49056770	rs12138134	C	A	207.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=0.110;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	49193394	rs1385152	G	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr1	49224584	rs1128934	G	T	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:26,69:0.73:95
chr1	49284020	rs11205548	C	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	49332724	rs6703833	A	C	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=-0.210;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:24,58:0.71:82
chr1	49332969	rs61785986	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	49711281	rs7528510	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	50331725	rs10788920	T	C	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	50575675	rs148666401	CTG	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.809;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:68,14:0.17:82
chr1	50661411	rs2480683	C	T	8066.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	50666515	rs2494876	C	T	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	50884773	rs4027495	CCGGCGG	C	890.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.84;ReadPosRankSum=-1.028;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr1	50884778	rs2746610	G	A	109.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.113;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	50884784	rs368034286	G	A	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.29;ReadPosRankSum=-0.665;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr1	50956117	.	AAGGAAGGAAGGAAG	A	1208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.616;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=6.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.77;ReadPosRankSum=-2.297;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,30:0.94:32
chr1	50956163	rs143167159	AAAGG	A	2097.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=45.60;SOR=3.564;set=HC	GT:AD:AF:DP	0/1:0,46:1.00:46
chr1	50956212	rs149582773	C	CAAATACAGTGG	7440.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	50957509	rs1149790	A	T	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	51078089	rs17387761	G	A	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	51754024	rs71578066	G	GT	1274.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,39:0.81:48
chr1	51754702	.	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.167;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr1	51754726	rs12734773	C	T	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr1	51767757	.	G	GCACCTCCCTC	3310.73	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:44,74:0.63:118
chr1	51777748	rs7521849	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	51905949	.	CTG	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	51985077	.	T	TGCCCGCCC	321.75	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	52266242	rs8375	G	A	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	52277655	rs374263117	A	C	4363.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:68,192:0.74:260
chr1	52279650	rs2982846	T	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	52289220	rs67976949	TGTATTAAGGTCAA	T	1178.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	52290984	rs11205896	T	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	52293570	rs2077725	G	A	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	52293638	rs706495	G	A	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	52306063	rs35723519	ATCT	A	4124.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	52344414	rs736756	A	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	52402856	rs10888741	T	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	52402956	rs10888742	G	A	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	52489322	rs2783178	G	A	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	52490295	rs75521943	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-1.184;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:111,18:0.14:129
chr1	52490418	rs4926906	C	T	792.53	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:3,31:0.91:34
chr1	52498861	rs2783175	A	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-1.225;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:241,61:0.20:302
chr1	52507070	rs2809958	T	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.233;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr1	52517412	rs7529324	A	G	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:38,128:0.77:166
chr1	52518164	rs12047841	A	G	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.547;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr1	52530736	rs138064927	CTG	C	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	52530757	rs12026584	A	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr1	52552001	rs2985749	A	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	52705285	rs3790523	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.143;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:113,26:0.19:139
chr1	52705416	rs17107118	A	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	52729432	rs3833531	C	G	3539.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.154;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=25.342;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.07;ReadPosRankSum=-1.199;SOR=3.857;set=HC	GT:AD:AF:DP	1/1:14,154:0.92:168
chr1	52820226	rs2820334	G	A	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	52820852	rs6690342	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	52823499	rs62000427	C	A	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:27,101:0.79:128
chr1	52851608	rs3087481	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.087;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr1	52878300	rs4319263	T	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=1.020;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr1	52882406	rs6677047	A	G	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.738;QD=2.49;ReadPosRankSum=0.218;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:89,23:0.21:112
chr1	53068093	rs11205977	G	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr1	53072454	rs1970951	T	C	6404.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:62,273:0.81:335
chr1	53073838	rs11590859	G	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr1	53192187	rs269298	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	53237526	rs1571979	G	A	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	53245472	rs9661082	A	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	53250650	rs6588443	G	A	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	53255587	rs58685388	CT	C	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=0.750;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	53262572	.	TTA	T	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.45;ReadPosRankSum=-1.061;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	53271225	rs487453	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	53282077	rs12733669	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr1	53320274	rs480299	G	T	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:45,124:0.73:169
chr1	53323492	rs10788945	C	A	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	53364976	rs576891	A	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:18,45:0.71:63
chr1	53365104	rs2298145	A	G	387.85	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	53387215	rs55836843	G	A	4395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.55;ReadPosRankSum=0.470;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:39,198:0.84:237
chr1	53407406	.	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.63;ReadPosRankSum=-1.931;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	53535478	rs1288386	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.779;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr1	53537266	rs1769316	G	A	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.627;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:379,105:0.22:484
chr1	53543112	rs946590	C	G	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	53544439	rs1288388	G	A	17508.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr1	53544597	rs1288389	T	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	53553702	rs1288400	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	53553754	rs1288401	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	53555783	rs1288403	A	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	53558270	rs1288406	A	G	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	53559310	rs11206091	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	53571288	rs1288422	C	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	53574123	rs1769289	C	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	53600078	rs3737989	A	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.371;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr1	53662823	rs72673121	C	A	3664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=-0.176;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:61,168:0.73:229
chr1	53676448	rs1799821	G	A	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:21,93:0.82:114
chr1	53679229	rs1799822	A	G	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,36:0.86:42
chr1	53681699	rs1134688	T	G	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:58,157:0.73:215
chr1	53684525	rs436887	C	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.791;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	53686347	.	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.236;SOR=2.213;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chr1	53686383	rs1679913	C	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	53738419	rs41294758	C	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.828;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:126,42:0.25:168
chr1	53740237	rs112461779	C	T	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:8,46:0.85:54
chr1	53746473	rs2297658	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:85,38:0.31:123
chr1	53755117	rs13306535	G	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,76:0.75:102
chr1	53755151	rs12035577	T	C	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.906;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:108,44:0.29:152
chr1	53792651	rs3820198	A	C	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.385;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:205,49:0.19:254
chr1	53793511	rs4926972	T	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.938;QD=5.73;ReadPosRankSum=0.090;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr1	53793511	.	TGCA	CGCA	185	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=18;MQ=55.95;NF=7,0;NR=11,3;PP=185,81;QD=12.2095118082;SC=ATGCTGGAGCTGCAGCAGCAG;SbPval=0.56;Source=Platypus;TC=45;TCF=17;TCR=28;TR=18,3;WE=53793521;WS=53793501;set=Platypus	GT:AD:AF:DP	0/1:27,18:0.40:45
chr1	53793511	.	TGCA	T	185	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=18;MQ=55.95;NF=7,0;NR=11,3;PP=185,81;QD=12.2095118082;SC=ATGCTGGAGCTGCAGCAGCAG;SbPval=0.56;Source=Platypus;TC=45;TCF=17;TCR=28;TR=18,3;WE=53793521;WS=53793501;set=Platypus	GT:AD:AF:DP	0/1:25,3:0.11:28
chr1	53975436	rs475322	C	A	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	53990321	rs541224	C	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	53995515	rs12021912	G	A	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	53995757	rs12025611	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	54060016	rs35227000	G	C	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:57,156:0.73:213
chr1	54060248	rs4307514	T	C	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:25,87:0.78:112
chr1	54233511	rs71637818	T	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:11,57:0.84:68
chr1	54233542	rs41311158	A	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:16,80:0.83:96
chr1	54252710	rs34088131	T	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr1	54272063	rs1181146	A	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,47:0.77:61
chr1	54284814	rs12089209	C	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr1	54298315	rs12744846	C	T	1110.84	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:7,49:0.88:56
chr1	54303780	rs1181201	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	54325688	rs11206230	T	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,54:0.75:72
chr1	54331763	rs1883453	A	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	54344282	rs2272928	C	A	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	54348716	rs3737835	T	C	309.84	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	54354658	rs2294508	T	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr1	54356002	rs6702862	G	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	54356106	rs6656722	G	A	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:32,104:0.76:136
chr1	54356341	rs6682112	C	G	1425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.10;ReadPosRankSum=0.601;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:12,37:0.76:49
chr1	54356347	rs6694562	A	T	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.41;ReadPosRankSum=-1.836;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:8,33:0.80:41
chr1	54359922	rs2294510	C	T	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:29,110:0.79:139
chr1	54370235	rs3215500	A	AG	86.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	54375570	rs2235544	C	A	4232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=-0.033;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:43,178:0.81:221
chr1	54389774	rs61674130	TAG	T	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	54483694	rs34764952	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-1.684;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:133,33:0.20:166
chr1	54561916	rs7555099	C	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.595;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:99,30:0.23:129
chr1	54605319	rs36013100	G	GC	3547.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	54606804	rs3766465	C	T	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	54607051	rs671103	A	G	10001.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr1	54607157	rs671539	G	A	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	54618435	rs7528345	A	T	10550.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr1	54637167	rs625643	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	54660979	rs11206299	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.346;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr1	54661150	rs946448	C	T	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:28,103:0.79:131
chr1	54683856	rs15921	C	G	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	54683925	rs6621	G	A	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:12,80:0.87:92
chr1	54686374	rs612711	T	C	5867.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	54686464	rs613158	C	T	5220.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	54690954	rs3088379	T	C	3634.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:32,150:0.82:182
chr1	54692859	rs141516563	G	GGC	867.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.04;QD=41.32;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	54703702	rs946443	C	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr1	54706733	rs2297027	A	G	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=1.520;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:173,47:0.21:220
chr1	54871566	.	ACCGC	A	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-0.908;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	55014099	rs299874	C	T	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.01;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	55014099	.	CGCT	TGCC,TGCT	629	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.06;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=22;MQ=60.0;NF=6,24;NR=7,29;PP=106,629;QD=12.2667596048;SC=TTAACTCAGACGCTCTGCATC;SbPval=0.57;Source=Platypus;TC=53;TCF=24;TCR=29;TR=13,53;WE=55014110;WS=55014089;set=Platypus	GT:AF:DP	0/1:0.25:53
chr1	55014102	rs12133271	T	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.959;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr1	55014160	rs299872	C	T	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	55064898	rs112040476	A	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=58.31;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	55074922	rs2289016	G	A	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	55078046	rs1655528	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	55080612	rs147772009	GGTGT	G	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:3,62:0.95:65
chr1	55080629	rs1702015	A	G	1456.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.420;MLEAC=2;MLEAF=1.000;MQ=67.08;MQRankSum=2.729;QD=22.76;ReadPosRankSum=-1.637;SOR=1.759;set=HC	GT:AD:AF:DP	1/1:3,61:0.95:64
chr1	55100328	rs6588520	T	C	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	55118566	rs1655520	C	G	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	55119144	rs11206407	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-1.358;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:186,44:0.19:230
chr1	55119289	rs9332417	G	C	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.426;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:348,101:0.22:449
chr1	55119515	rs1655519	T	G	11825.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:137,510:0.79:647
chr1	55119546	rs1655518	A	G	18699.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:0,678:1.00:678
chr1	55129564	rs1529783	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	55130931	rs2078273	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=1.243;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:51,9:0.15:60
chr1	55130946	rs6703113	G	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=0.289;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:40,8:0.17:48
chr1	55130972	rs471724	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	55134379	rs627095	C	T	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	55134487	rs478513	G	A	4566.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:55,192:0.78:247
chr1	55136067	rs2251719	T	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	55136356	rs627226	C	T	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=8.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.381;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:90,32:0.26:122
chr1	55136529	rs480963	T	C	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:50,106:0.68:156
chr1	55138673	rs564400	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr1	55139741	rs570218	A	G	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	55167773	rs646356	T	A	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	55182300	rs1147990	T	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=2.072;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr1	55199104	rs60670381	T	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.91;ReadPosRankSum=-0.964;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	55199105	rs60766581	A	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.91;ReadPosRankSum=-0.427;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	55247097	rs2286203	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr1	55247518	rs3815225	C	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.773;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr1	55251689	rs586462	T	C	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	55253346	rs2269999	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr1	55253575	rs665118	T	C	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	55253594	rs2269998	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr1	55266845	rs1147984	C	T	3207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.44;ReadPosRankSum=-0.350;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:34,140:0.80:174
chr1	55271730	rs77971467	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.777;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr1	55271774	rs757581	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	55271845	rs72895754	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.531;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr1	55271935	rs112383693	A	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.121;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:112,29:0.21:141
chr1	55272643	rs6666034	C	G	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.654;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.901;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:325,54:0.14:379
chr1	55273580	rs9782980	G	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:17,112:0.87:129
chr1	55277430	rs10788986	T	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	55277599	rs600499	T	C	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	55279345	rs149536795	CCCGGCCT	C	443.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	55282556	rs733168	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr1	55307501	rs41297871	A	G	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.516;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:166,57:0.26:223
chr1	55307640	rs59138759	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-2.220;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr1	55318108	rs667222	C	T	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=8.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.448;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:105,37:0.26:142
chr1	55319008	rs631749	T	C	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.332;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr1	55319902	rs718265	A	G	2140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.131;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=0.771;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,97:0.86:113
chr1	55330966	rs611057	T	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	55336950	rs608458	C	G	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr1	55446664	rs2253467	G	C	4424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.78;ReadPosRankSum=-0.466;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:31,104:0.77:135
chr1	55446671	rs2253466	C	T	4742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.46;ReadPosRankSum=-0.224;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:38,123:0.76:161
chr1	55446697	rs2253465	G	A	3870.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:51,171:0.77:222
chr1	55457710	rs2500326	G	A	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:39,126:0.76:165
chr1	55457815	rs2495513	C	T	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr1	55464743	rs2500340	T	C	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:12,50:0.81:62
chr1	55464790	rs2500341	C	G	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:24,111:0.82:135
chr1	55470811	rs41297877	G	A	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:50,112:0.69:162
chr1	55473043	rs6687801	G	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.06;QD=26.34;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	55474262	rs33938617	G	A	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:47,143:0.75:190
chr1	55474325	rs6682884	A	C	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	55474476	rs4339899	C	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	55505732	rs2495482	A	G	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	55516781	rs599037	G	T	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	55517861	rs613855	C	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:15,49:0.77:64
chr1	55517883	rs624612	C	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:21,70:0.77:91
chr1	55518166	rs625619	G	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr1	55518190	rs45597632	AC	A	1044.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	55518316	rs2483205	C	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.025;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr1	55518528	rs494198	C	A	611.79	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr1	55521899	rs201349983	GGGGCGGA	G	550.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	55523033	rs509504	A	G	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	55524116	rs585131	C	T	101.78	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	55524197	rs540796	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr1	55524237	rs562556	G	A	430.28	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr1	55524339	rs368103912	CGTGTGTGTGTGTGT	C	120.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	55524387	rs563641	T	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.64;ReadPosRankSum=-0.812;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	55525400	rs483462	G	A	267.31	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	55527323	rs630431	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr1	55529187	rs505151	G	A	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	55537966	rs17410238	G	A	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.609;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:175,49:0.22:224
chr1	55538385	rs654674	T	C	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chr1	55538462	rs17410294	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.571;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:143,28:0.16:171
chr1	55538552	rs10493176	T	G	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:28,130:0.82:158
chr1	55541174	rs487230	A	G	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:17,57:0.77:74
chr1	55546895	rs683880	T	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr1	55555285	rs548852	G	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr1	55557859	rs34673217	A	ATT	579.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr1	55557864	rs3736992	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	55558661	rs585203	A	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	55560796	rs503495	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	55562125	rs580485	G	T	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr1	55566411	rs67540253	TTAGTC	T	1246.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr1	55567143	rs1165282	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr1	55567410	rs615652	A	G	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:27,99:0.79:126
chr1	55571953	rs41301092	T	C	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:14,50:0.78:64
chr1	55572867	rs594226	G	A	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:15,76:0.84:91
chr1	55575670	rs534741	A	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	55614036	rs34030121	CAT	C	464.37	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:1,12:0.92:13
chr1	55619422	rs1165230	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	55638075	rs1165222	G	A	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:22,84:0.79:106
chr1	55643837	rs11350615	TA	T	1458.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:9,56:0.86:65
chr1	56977819	rs3738570	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.126;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr1	57185818	rs857141	A	G	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	57219631	rs11404547	G	GA	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr1	57221553	rs1774808	GA	TG	2958.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,74:0.82:90
chr1	57224460	rs857103	G	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr1	57252615	rs2275733	A	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	57258485	rs1935553	A	G	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:14,67:0.83:81
chr1	57373500	rs10562652	GAGA	G	472.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	57395251	rs605648	T	C	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	57406392	rs6669836	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	57409327	rs41286846	T	C	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	57422484	rs1013579	C	T	7176.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	57477034	rs697580	G	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr1	57480424	rs944923	C	G	297.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	57489137	rs3738558	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	57528772	rs1261611	A	G	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	57535198	rs3738556	C	A	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr1	58939502	rs12118488	C	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.321;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=0.361;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr1	58946861	rs12144759	T	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=8.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.457;SOR=0.059;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	58946947	rs338224	T	C	115.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	58971831	rs3087585	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.535;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:136,25:0.16:161
chr1	58971940	rs11207245	C	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr1	58999712	rs34851388	G	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.451;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:73,27:0.27:100
chr1	59004979	rs902925	C	T	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	59042181	rs14008	G	T	7329.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:106,308:0.74:414
chr1	59042388	rs1062964	C	G	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:50,163:0.77:213
chr1	59042882	rs232835	T	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.47;ReadPosRankSum=-0.135;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	59125894	rs12092264	A	G	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.04;ReadPosRankSum=0.709;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	59125899	rs12082192	G	A	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.04;ReadPosRankSum=0.709;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	59126676	rs232779	A	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	59127024	rs4912364	T	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr1	59127086	rs7523134	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-1.701;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr1	59127193	rs7525365	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	59131311	rs232790	G	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	59134586	rs11207284	G	C	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:30,126:0.81:156
chr1	59134607	rs57822474	C	CAG	6452.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	59137783	rs539141	A	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	59139223	rs2064370	C	G	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:29,124:0.81:153
chr1	59142713	rs579110	T	C	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.13;ReadPosRankSum=1.052;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:22,82:0.79:104
chr1	59147420	rs11207292	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,38:0.79:48
chr1	59147926	rs12139511	T	C	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:38,148:0.80:186
chr1	59150941	rs2206764	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	59150997	rs5774421	TA	T	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.591;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	59156155	rs12076049	C	T	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=0.733;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr1	59158632	rs12097333	T	C	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr1	59160724	rs66629118	TA	T	132.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	59160735	rs2473746	A	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-1.571;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	59160885	rs2064374	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:44,12:0.21:56
chr1	59160982	rs5774423	ATACT	A	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr1	59165838	rs11207297	T	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr1	59248813	rs2760499	G	C	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	59844471	rs835435	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.752;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:204,41:0.17:245
chr1	60223460	rs590704	A	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.152;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	60228310	rs10626387	T	TTC	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.011;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr1	60280749	rs113730234	GT	G	1814.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	60299820	rs618716	C	G	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	60302517	rs374680142	A	G	526.03	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr1	60334046	rs190835877	T	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	60466814	rs626251	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=2.234;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr1	60466840	rs35944236	TA	T	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.202;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:14,35:0.71:49
chr1	60466911	rs67112814	ACAG	A	727.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr1	60475930	rs616949	C	G	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	60503762	rs17560663	T	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,59:0.71:83
chr1	60505578	rs680390	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	61330929	rs112380759	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr1	61548344	rs113913435	TTC	T	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.578;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.208;QD=3.05;ReadPosRankSum=0.797;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:154,43:0.22:197
chr1	61743160	rs332827	G	A	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	61818422	rs7528918	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=35.52;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	61818428	rs200638269	T	TACAC,TAC	806.79	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/1:0.92:24
chr1	61869783	rs2236059	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.906;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr1	61870000	rs143540716	A	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=1.543;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr1	61872215	rs58081092	GC	G	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=0.120;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:10,28:0.74:38
chr1	61872228	rs28641100	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.830;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr1	61892301	rs5774558	T	TG	5335.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	61921185	rs11423561	A	AT	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.151;SOR=1.540;set=HC	GT:AD:AF:DP	0/1:75,26:0.26:101
chr1	62160542	rs1151765	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	62189541	rs17312971	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	62232031	rs1286835	C	T	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	62329885	rs35853578	AT	A	116.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	62330080	rs2799627	T	G	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	62330374	rs17371993	A	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.284;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:111,23:0.17:134
chr1	62340855	rs12753462	G	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	62341157	rs4598521	T	C	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	62350123	.	GTTTTTT	G,GT	1603.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.329;QD=35.64;ReadPosRankSum=1.553;SOR=1.828;set=HC	GT:AD:AF:DP	1/2:1,21,23:0.47,0.51:45
chr1	62374267	rs2151122	T	C	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr1	62380124	rs4915789	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	62380270	rs1134766	C	T	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	62380298	rs1056513	G	A	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.544;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	62393394	rs2251182	A	G	7368.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:1,286:1.00:287
chr1	62417925	.	T	TGAGAGAGA,TGAGAGAGAGA	435	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.4996,0.5004;HP=1;HapScore=2;MGOF=34;MMLQ=22;MQ=60.0;NF=14,14;NR=1,1;PP=23,435;QD=1.8;SC=GAACAAAATCTGAGAGAGAGA;SbPval=0.74;Source=Platypus;TC=23;TCF=21;TCR=2;TR=15,15;WE=62417933;WS=62417915;set=Platypus	GT:AF:DP	0/1:0.65:23
chr1	62417951	.	A	AG	757.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.14;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	62417952	.	A	G	1070	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=4;HapScore=1;MGOF=113;MMLQ=28;MQ=60.0;NF=39;NR=2;PP=1070;QD=26.9456393304;SC=GAGAGAGAGAAAAATAGGCCC;SbPval=0.78;Source=Platypus;TC=42;TCF=39;TCR=3;TR=41;WE=62417960;WS=62417942;set=Platypus	GT:AD:AF:DP	1/1:1,41:0.98:42
chr1	62417952	.	A	AGAGAGAGAG	705.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.14;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	62516683	rs2498982	G	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=1.415;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:125,40:0.24:165
chr1	62545085	rs17379217	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.829;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr1	62566193	rs113199971	C	T	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr1	62579672	rs1475564	A	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-1.824;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr1	62579823	rs1475563	G	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.450;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:232,44:0.16:276
chr1	62587014	rs4019806	T	TA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=7.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=1.113;SOR=1.482;set=HC	GT:AD:AF:DP	0/1:104,29:0.22:133
chr1	62593893	rs2481664	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr1	62594593	rs2476194	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.100;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:100,22:0.18:122
chr1	62594677	rs2481665	T	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=0.017;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr1	62644118	rs2481703	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr1	62672546	rs2457829	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:70,27:0.28:97
chr1	62673037	rs7542665	T	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.542;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-1.584;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:151,31:0.17:182
chr1	62673225	rs7533274	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.223;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr1	62675619	rs4625314	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	62675892	rs2481694	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.087;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:67,15:0.18:82
chr1	62676284	rs2886644	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.659;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr1	62676714	rs75391297	T	G	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:41,122:0.75:163
chr1	62677048	rs1056517	G	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.473;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	62704134	rs41289438	A	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=1.175;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:16,35:0.69:51
chr1	62712999	rs111297754	TG	T	190.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	62713224	rs2941679	C	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	62713246	rs10889315	G	A	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:23,75:0.77:98
chr1	62728784	rs2666472	A	G	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr1	62728838	rs2258470	T	C	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:34,71:0.68:105
chr1	62728861	rs2260581	T	C	3490.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:33,100:0.75:133
chr1	62728918	rs2262110	G	A	3261.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:51,142:0.74:193
chr1	62729015	rs2262106	G	A	2859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=-0.142;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:27,124:0.82:151
chr1	62732421	rs11207949	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr1	62737125	rs77901899	T	C	5126.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:64,223:0.78:287
chr1	62738904	rs7516290	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	62740446	rs2666506	T	C	5066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.52;ReadPosRankSum=-0.061;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:38,128:0.77:166
chr1	62740449	rs2666507	T	C	5066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.07;ReadPosRankSum=-0.602;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:36,122:0.77:158
chr1	62911191	rs17381154	T	C	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	62923363	.	A	C	1941.77	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:34,94:0.73:128
chr1	62939634	rs1168007	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	62943264	rs1168008	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	62945373	.	G	A	311.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	62953183	rs1168025	C	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	62954372	rs57650980	G	GA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-0.214;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	62960101	rs10889335	A	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr1	62961928	rs1168038	T	C	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	62973795	rs1184865	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	62976472	rs1168043	T	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	63001120	rs1168018	A	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.914;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:78,14:0.15:92
chr1	63027411	rs5774610	AG	A	1971.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	63044645	rs199915737	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.852;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	63050598	rs3850634	T	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	63052344	rs56200511	CTA	C	523.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr1	63070537	rs67461605	AGTTAATGTG	A	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	63085483	rs34571440	T	TA	330.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=1.744;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr1	63090858	rs6587980	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,41:0.85:48
chr1	63099023	rs10889352	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	63113511	rs746735	C	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.862;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr1	63113689	rs1168088	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	63113719	rs1168089	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr1	63153866	rs183409343	C	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.792;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr1	63153953	rs4344355	C	T	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:16,74:0.82:90
chr1	63269580	rs12125325	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	63270772	rs1927486	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	63271010	rs10789128	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	63285033	rs3737891	T	C	1133.28	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:4,41:0.91:45
chr1	63300855	rs59745958	T	TA	31.75	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	63307303	rs3737892	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.995;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=10.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=0.000;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	63340024	rs148422726	A	T	167.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.80;ReadPosRankSum=-0.589;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	63836513	rs34542411	C	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.713;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	63872032	rs35383149	T	C	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr1	63872600	rs12755065	T	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	63872871	rs6588028	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.356;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr1	63881552	rs4630153	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr1	63920515	rs17319708	C	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr1	63975830	rs6588047	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	63991140	rs9436686	T	C	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	63997633	rs9804078	A	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-1.242;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:67,15:0.18:82
chr1	63999826	rs6693255	C	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.153;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:114,25:0.18:139
chr1	63999868	rs6657480	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.960;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:90,15:0.14:105
chr1	63999891	rs6657559	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-1.454;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:62,13:0.17:75
chr1	64011657	rs41313264	A	G	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:13,63:0.83:76
chr1	64015217	rs217485	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.611;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:57,11:0.16:68
chr1	64021096	rs2273367	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.303;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:109,23:0.17:132
chr1	64038107	rs6588050	G	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.044;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr1	64097432	rs1126728	C	T	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.261;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:255,54:0.17:309
chr1	64100478	rs6588052	A	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	64102114	rs2269248	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	64114301	rs11208257	T	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=2.577;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:22,40:0.65:62
chr1	64117537	rs2269238	G	T	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:28,76:0.73:104
chr1	64125234	rs11208265	G	T	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:18,60:0.77:78
chr1	64125368	rs8294	C	T	2361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=1.591;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:32,108:0.77:140
chr1	64125439	rs4643	A	C	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr1	64515379	rs1772626	C	T	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	64603231	rs3738151	G	A	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr1	64608329	rs2762833	G	T	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	64608423	rs11208364	G	A	1262.79	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:7,53:0.88:60
chr1	64624612	rs4362024	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	64624842	rs6668545	A	G	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:58,197:0.77:255
chr1	64669567	rs2806529	A	T	399.03	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr1	64680682	rs825174	C	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	64698411	rs2029868	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	64707243	rs825189	G	C	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	64709891	rs10789152	A	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	64726149	rs59424600	C	CTCAG	176.87	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	64726414	rs705542	A	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	65016349	rs2164571	A	T	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	65016399	rs11808959	G	A	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:21,144:0.87:165
chr1	65045602	rs5774708	TA	T	492.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=61.11;MQRankSum=0.471;QD=18.25;ReadPosRankSum=-0.579;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr1	65068638	rs6665437	T	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	65099978	rs2118102	G	A	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	65107372	rs6664905	C	T	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	65113351	rs7534210	T	C	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	65113568	rs6588100	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	65141676	rs202029689	TTAATAA	T	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.733;QD=7.65;ReadPosRankSum=-0.714;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr1	65247394	rs2478151	T	C	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	65255018	rs2500232	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr1	65270549	rs12134044	A	G	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:14,65:0.82:79
chr1	65301669	rs2254002	C	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	65303659	rs12129819	C	T	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:40,132:0.77:172
chr1	65310489	rs2230588	T	C	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:50,113:0.69:163
chr1	65311116	rs2780821	GC	CT	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr1	65313414	rs12739954	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr1	65316675	rs310216	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr1	65321388	rs310229	G	A	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:35,141:0.80:176
chr1	65325970	rs310224	C	T	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr1	65326098	rs200133188	CATGCATTT	C	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	65330682	rs2256298	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	65335062	rs45598436	A	G	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:24,136:0.85:160
chr1	65830297	rs2296478	G	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.32;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	65830299	rs2296479	T	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.30;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	65830608	rs1570868	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	65844963	rs3818449	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	65858088	rs6588144	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	65858145	rs4325172	G	A	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	65860687	rs4582839	A	C	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	65867391	rs4592284	C	G	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	65886398	rs3790435	T	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.704;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr1	65886448	rs3790434	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.173;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:149,31:0.17:180
chr1	65887013	rs12145690	A	C	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.724;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:118,30:0.20:148
chr1	66036441	rs1137100	A	G	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr1	66036501	rs2186248	G	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	66058513	rs1137101	A	G	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	66064293	rs3762273	A	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	66083537	rs4655564	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	66085574	rs3790439	T	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	66087301	rs4655743	G	C	165.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	66088701	rs12067936	C	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr1	66091656	rs145580828	ACACT	A	1057.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr1	66102257	rs1805096	G	A	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:45,127:0.74:172
chr1	66618316	rs202241040	TACACACACAC	T	323.74	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	66731886	rs6588193	G	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	66732386	rs6588194	G	A	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	66732529	rs6701329	A	T	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	66829262	rs783039	A	G	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	66831322	rs7538869	T	G	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:33,113:0.77:146
chr1	66831370	rs783036	G	A	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:51,163:0.76:214
chr1	67091686	rs74970464	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.527;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr1	67094288	rs72669450	A	G	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr1	67109410	rs145373755	T	TTGTG	2117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.801;QD=7.38;ReadPosRankSum=-0.182;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:218,69:0.24:287
chr1	67109479	rs17129244	A	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.280;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:126,40:0.24:166
chr1	67136610	rs7540244	G	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.522;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	67142852	rs6689451	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-1.668;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr1	67145322	rs10889644	C	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.649;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:329,66:0.17:395
chr1	67154730	rs35898963	CA	C	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.142;QD=4.86;ReadPosRankSum=-0.745;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:48,51:0.52:99
chr1	67155862	rs71660869	TCTC	T	1724.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.809;QD=7.40;ReadPosRankSum=1.317;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:178,55:0.24:233
chr1	67160884	rs16844	A	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr1	67160938	.	T	TA	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-1.914;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:57,44:0.44:101
chr1	67160981	rs1325268	C	T	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.100;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=5.056;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.532;QD=3.78;ReadPosRankSum=-2.675;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:159,47:0.23:206
chr1	67194911	rs3078564	TTC	T	3433.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	67236097	rs1060575	A	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=1.304;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:125,29:0.19:154
chr1	67242087	rs3816989	G	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-2.630;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:150,44:0.23:194
chr1	67242200	rs7541120	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr1	67242225	rs35979624	CAT	C	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=-1.525;QD=7.73;ReadPosRankSum=0.227;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr1	67242241	rs72451064	TGG	T	527.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=-1.845;QD=11.23;ReadPosRankSum=-0.865;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr1	67242243	rs148639880	G	GGT	484.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=2.593;QD=13.10;ReadPosRankSum=2.524;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr1	67242253	rs370292327	T	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.831;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=-1.768;QD=12.56;ReadPosRankSum=0.054;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr1	67242260	rs35737694	GTA	G	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.00;MQRankSum=-1.821;QD=11.57;ReadPosRankSum=-0.280;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	67243024	rs2133173	C	A	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:32,136:0.81:168
chr1	67266756	rs549148	T	A	1261.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=-0.357;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:8,55:0.87:63
chr1	67288045	rs482082	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.009;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:156,45:0.22:201
chr1	67292473	rs34718535	A	AT	2532.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,61:0.80:76
chr1	67292478	rs36067642	T	A	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:15,66:0.81:81
chr1	67390416	rs3008858	G	C	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.059;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:281,56:0.17:337
chr1	67390468	rs1886686	C	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.110;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:230,41:0.15:271
chr1	67425311	rs2985794	T	G	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	67436446	rs4553158	A	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr1	67438535	rs12131222	A	T	476.18	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr1	67442210	rs11208978	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr1	67442275	rs11208979	C	T	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:24,72:0.75:96
chr1	67447450	rs12039172	A	G	2544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.44;ReadPosRankSum=-1.632;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:34,104:0.75:138
chr1	67452322	rs17497828	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	67487119	rs2065002	C	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr1	67487374	.	TCCAACA	T	596	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=4;HapScore=1;MGOF=11;MMLQ=25;MQ=60.83;NF=1;NR=13;PP=596;QD=46.5198454786;SC=CGAGTCTGCCTCCAACACAGA;SbPval=0.65;Source=Platypus;TC=54;TCF=4;TCR=50;TR=14;WE=67487387;WS=67487364;set=Platypus	GT:AD:AF:DP	1/0:40,14:0.26:54
chr1	67512861	rs2273680	G	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-1.923;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:55,11:0.17:66
chr1	67515563	rs3048488	CAT	C	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.799;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr1	67558739	rs6588237	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=1.349;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr1	67560897	rs10889653	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.803;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr1	67560956	rs11208997	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-1.862;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:100,33:0.25:133
chr1	67577367	rs6588240	A	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.821;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr1	67579245	rs2144655	G	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	67579386	rs2144656	A	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr1	67591660	rs4655520	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.381;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=2.125;QD=1.71;ReadPosRankSum=0.533;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	67648460	rs6687620	T	C	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	67685387	rs7530511	T	C	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	67685443	rs7518660	G	A	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	67702221	rs141283048	AAAG	A	1037.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr1	67705726	rs10889671	A	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	67792626	.	T	TTTTA	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.47;ReadPosRankSum=1.242;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	67795319	rs1495963	T	C	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	67852141	rs12138812	A	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	67852335	rs2228420	G	A	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	67861520	rs2229546	C	A	8319.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr1	68151980	rs2759219	T	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr1	68152363	rs3783468	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	68152388	rs681673	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	68173264	rs2295942	C	T	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:41,95:0.70:136
chr1	68603731	rs1831297	A	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=1.451;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr1	68614013	rs2566789	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.647;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr1	68620762	rs3762371	G	A	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.619;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:250,79:0.24:329
chr1	68698063	rs200868280	C	T	4010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=1.060;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:37,179:0.83:216
chr1	68905358	rs1925955	G	C	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	68943436	rs1924542	G	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-1.001;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr1	68943442	rs3790476	A	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-1.790;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr1	68944524	rs17097401	G	A	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr1	68944792	rs3762282	C	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr1	68947318	rs3833522	C	CA	8606.73	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	68948280	rs3790479	A	C	4630.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:64,193:0.75:257
chr1	68948839	rs17130708	A	G	373.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr1	68952564	rs138180992	AAC	A	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.15;ReadPosRankSum=-0.524;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	68960038	rs3790483	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	68960349	rs78030459	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr1	68960404	rs72674357	A	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=0.487;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	68960411	rs72674358	T	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.42;ReadPosRankSum=0.183;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	70034370	rs11280966	C	CCAGCCGCGTG	4973.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.83;QD=42.88;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	70225832	rs17397812	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.218;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.886;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	70397087	rs7530457	T	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=1.547;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:119,32:0.21:151
chr1	70502413	rs59671095	AT	A	244.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	70587360	rs641909	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr1	70639111	.	T	TGG	820.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr1	70654919	rs4650030	A	G	2960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=0.537;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:47,132:0.74:179
chr1	70654981	.	GAA	G	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=3.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.217;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:25,29:0.54:54
chr1	70700491	rs201325006	A	G	1130.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.56;ReadPosRankSum=0.501;SOR=0.520;set=HC	GT:AD:AF:DP	1/1:3,45:0.94:48
chr1	70887183	rs6413471	A	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	70904523	rs112004441	T	TTGTG,TTG	1325.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=105;set=Intersection	GT:AF:DP	0/1:0.78:46
chr1	71327936	rs112423301	T	TA	1338.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:23,72:0.76:95
chr1	71328234	rs7533733	A	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	71331430	rs5702	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr1	71331498	rs1409986	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	71349613	rs1854150	C	T	111.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	71419499	rs571705	C	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	71440217	rs2072947	C	T	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	71533287	rs66461782	A	T	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	71537943	rs11209745	A	G	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=1.442;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr1	71873154	rs41289154	T	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.598;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr1	72058367	rs1334004	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	72058405	rs1334005	T	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	72058552	rs1413368	G	A	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	72242039	rs6424448	G	A	143.10	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:1,6:0.86:7
chr1	72747844	rs3101341	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	74507711	rs7538410	T	G	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	74575182	rs1340472	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	74610233	.	TA	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.791;QD=7.55;ReadPosRankSum=1.344;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	74646514	rs6701961	C	T	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	74664149	rs4422957	T	C	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	74665493	rs792310	G	A	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	74666344	rs35329584	A	AC	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	74669973	rs9425024	T	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	74671519	rs571848	A	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	74701295	rs505508	T	A	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	74701950	rs532221	T	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	74716515	rs11437074	C	CT	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.812;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr1	74819077	rs6424586	T	G	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	74841173	rs2880795	A	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	74883697	.	G	T	54.77	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	74901739	.	CTT	C,CT	509.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;MQRankSum=0.433;QD=16.44;ReadPosRankSum=-1.108;SOR=0.334;set=HC	GT:AD:AF:DP	1/2:2,17,12:0.55,0.39:31
chr1	74936374	rs596204	A	G	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	74936454	rs491922	G	C	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	74937749	rs3765674	A	G	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	74941210	rs648614	C	T	8371.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	74941293	rs649058	G	A	9495.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	75005776	rs6656785	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	75006076	rs3845348	G	A	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	75036783	rs9326115	T	C	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	75036812	rs9326116	C	T	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	75037845	rs12723334	A	G	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:56,156:0.74:212
chr1	75038228	rs11580409	A	C	5620.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:86,244:0.74:330
chr1	75042626	.	TA	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=2.991;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-2.401;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr1	75072264	rs41289216	G	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.418;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:80,21:0.21:101
chr1	75072554	rs143249130	G	A	6229.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:82,262:0.76:344
chr1	75097426	rs11210490	G	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-1.028;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr1	75132103	rs72675368	T	A	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chr1	75132462	rs5775255	T	TA	1200.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr1	75172001	rs7527057	T	A	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:41,159:0.80:200
chr1	75172756	rs71695861	TAA	T,TA	1730.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=24.04;SOR=0.910;set=HC	GT:AD:AF:DP	1/2:0,52,20:0.72,0.28:72
chr1	75190452	rs1051122	C	T	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	75199152	rs277373	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	75214390	rs749690	G	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:3,43:0.93:46
chr1	75603055	rs1526503	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	75609049	rs12041465	A	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	75614380	rs35220110	CT	C	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.017;QD=2.46;ReadPosRankSum=-0.997;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:142,63:0.31:205
chr1	75622616	rs941032	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.243;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.964;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:92,16:0.15:108
chr1	75626420	rs2462955	A	T	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	75672376	rs1948874	A	G	4822.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:57,217:0.79:274
chr1	75680545	rs688513	T	G	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	75681351	rs594470	A	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	75681511	rs595009	T	C	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	75685403	rs600734	T	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=5.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.332;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:152,28:0.16:180
chr1	75685643	rs12042874	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr1	75699646	rs10493564	T	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=2.228;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:117,40:0.25:157
chr1	75699771	rs10493565	A	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.376;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:228,54:0.19:282
chr1	75699831	rs10493566	G	A	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.418;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:135,30:0.18:165
chr1	75702674	rs17096508	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=1.322;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr1	75704070	rs141512125	CATATATATATAT	C	211.75	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	75707652	rs7556057	C	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.995;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:110,32:0.23:142
chr1	75716925	rs588098	C	T	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:43,106:0.71:149
chr1	75740845	rs1144298	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	75766186	rs623850	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	75823084	rs1249833	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	76143505	rs1746748	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	76190568	rs116034618	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr1	76194229	rs11316888	GT	G	1462.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	76194306	rs1146572	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	76234886	rs1146593	A	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	76252011	rs1146634	G	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:14,72:0.84:86
chr1	76252687	rs1146636	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr1	76253045	rs3831900	T	TA	1204.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr1	76255613	rs11588643	A	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr1	76257074	rs35837562	A	AT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-2.190;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr1	76257892	rs12703	A	T	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	76269372	rs5745323	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	76269460	rs5745325	G	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr1	76272837	rs3737574	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=5.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=2.042;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:85,19:0.18:104
chr1	76276536	rs5745356	T	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	76280543	rs1144339	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	76344011	rs1493367	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.311;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr1	76344705	rs5745448	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-1.018;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:48,14:0.23:62
chr1	76344711	rs5745449	A	T	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-0.277;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr1	76344920	rs5745453	G	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	76346920	rs5745466	C	CAT	2081.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	76365191	rs5745544	C	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	76378360	.	T	TA	1045.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=0.191;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:24,54:0.69:78
chr1	76378361	rs5020911	T	A	76.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.006;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr1	76378362	rs2881857	T	A	1279.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=0.462;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:20,64:0.76:84
chr1	76378363	rs28693610	T	A	181.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.441;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr1	76387748	rs12567390	T	A	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.789;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:52,11:0.17:63
chr1	76397972	rs3795251	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.356;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr1	76608491	rs289686	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	76608507	rs172333	C	G	3115.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	76608508	rs71071986	CT	C	1121.90	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:8,61:0.88:69
chr1	76608532	rs597362	T	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=40.09;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	76608691	rs12064337	G	T	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr1	76771475	rs10782610	G	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	76878199	rs79657041	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr1	77042635	rs41291518	C	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=9.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=2.127;SOR=1.566;set=HC	GT:AD:AF:DP	0/1:181,30:0.14:211
chr1	77092972	rs12562880	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.149;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr1	77093010	rs680442	CT	TG	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr1	77093180	rs1184626	C	A	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:27,106:0.80:133
chr1	77094514	rs12125529	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:21,75:0.78:96
chr1	77627096	rs839825	G	A	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	77634948	rs1779199	G	A	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	77759380	rs2815310	C	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	77759578	rs2815311	A	G	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:18,89:0.83:107
chr1	77763542	rs1167206	G	A	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	77876896	rs6703133	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.263;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=7.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.085;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr1	77949123	rs7515509	G	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-2.187;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	77949129	rs7528932	A	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-2.187;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	78001881	rs10873948	T	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	78024284	rs6675743	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	78024345	rs79671213	C	CTAT	2194.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	78031994	rs7552291	A	G	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	78033981	rs145860524	AAAATG	A	1270.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	78034156	.	CAAA	C	98	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	78045369	rs1565852	G	A	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	78179032	rs71075758	AT	A	384.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	78184433	rs1963170	G	A	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	78245131	.	G	GT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=6.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.350;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	78281002	rs11162386	T	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	78383467	rs1749913	G	A	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	78399207	rs4483454	C	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	78430689	rs11409017	A	AG	7828.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	78432506	rs200892659	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.412;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.974;QD=2.81;ReadPosRankSum=0.822;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:61,25:0.29:86
chr1	78471060	rs11384806	T	TC	120.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.366;QD=17.25;ReadPosRankSum=1.180;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	78478675	rs3790586	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	78481640	rs1039863	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	78963437	rs1322934	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.444;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	78998049	.	TTATATA	T,TTA	654.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=36;set=Intersection	GT:AF:DP	1/1:1.00:18
chr1	79093818	rs273259	A	G	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	79094081	rs1333973	T	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	79094593	rs273257	A	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	79095339	rs273256	A	C	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	79095526	rs3820093	G	A	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	79102726	rs1981071	C	T	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	79106899	rs273252	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	79128320	rs11577395	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	79128570	.	G	GT	5197.73	.	AC=2;AF=1.00;AN=2;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	79355596	rs1061728	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	79357360	rs2275902	G	C	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	79358743	.	CA	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=1.685;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	79358827	rs1968956	G	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.781;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr1	79383766	rs72675852	G	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:10,52:0.84:62
chr1	79387242	rs3811440	C	T	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	79403899	rs192616187	A	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	79411968	rs41313381	C	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.943;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:113,22:0.16:135
chr1	79472141	rs1571992	C	A	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	81967466	rs111927236	T	TCAG	3663.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:35,93:0.73:128
chr1	81967772	rs4083533	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr1	81970883	.	CCACACACA	C,CCA	587.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.30;QD=39.18;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:0,8,7:0.53,0.47:15
chr1	81970974	rs369786925	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=3.126;QD=2.20;ReadPosRankSum=1.927;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr1	82302600	rs12064537	T	C	1174.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.104;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.00;ReadPosRankSum=-0.747;SOR=0.359;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr1	82415814	rs9438715	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	82416220	rs2148630	G	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	82417552	rs7413275	T	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	82417609	.	T	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=1.602;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr1	82421596	rs11163397	C	T	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	82437670	rs144957268	ATTTGT	A	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.338;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr1	82437682	rs41292976	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.163;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr1	82456585	rs41292984	G	A	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:43,125:0.74:168
chr1	82459817	.	AAC	A	35	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=35;QD=15.0;SC=CTATTTGCAAAACACACACAC;SbPval=1.0;Source=Platypus;TC=17;TCF=1;TCR=16;TR=3;WE=82459826;WS=82459807;set=Platypus	GT:AD:AF:DP	1/0:14,3:0.18:17
chr1	84355734	rs71826512	AAGAACTTCAAGGAT	A	3365.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	84383079	rs17534614	G	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	84640691	rs582201	T	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	84640834	rs12132002	T	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	84765340	.	G	GTATATA	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.929;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:100,22:0.18:122
chr1	84765360	rs1625305	T	A	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=5.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=2.909;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr1	84791239	rs315555	T	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	84810396	rs315528	A	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	84810815	rs315527	A	G	9113.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	84853957	rs665074	A	T	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	84864256	rs3738573	G	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=2.209;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:136,39:0.22:175
chr1	84867610	rs3754274	G	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.293;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr1	84874242	rs3116406	C	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.417;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr1	84876711	rs3216015	C	CA	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=1.090;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:62,21:0.25:83
chr1	84876731	rs1506700	T	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr1	84880380	rs3768250	T	C	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.516;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:251,73:0.23:324
chr1	84944989	rs2292191	A	G	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	84946745	rs7413066	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	84956161	rs11440073	C	CT	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-1.105;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:238,54:0.18:292
chr1	84967676	.	GA	G	640.73	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,25:0.30:83
chr1	84986213	rs5775789	AT	A	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	85113203	rs2994949	T	C	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	85113229	rs1057746	A	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	85121097	rs10493751	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,41:0.85:48
chr1	85121255	rs4537578	A	G	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	85128262	rs2911563	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	85128280	rs2994437	T	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	85128305	rs11164033	G	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	85131641	rs2911566	G	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	85131982	rs3096445	T	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr1	85331808	rs146269415	G	GAGA	3732.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:24,92:0.79:116
chr1	85392324	rs6681025	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=5.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-3.034;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:121,29:0.19:150
chr1	85397286	rs34793286	G	C	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:40,100:0.71:140
chr1	85412602	rs186793249	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	85418307	rs677476	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr1	85422061	rs632545	C	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.395;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:174,57:0.25:231
chr1	85424182	rs673998	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.117;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr1	85462582	rs11161503	C	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr1	85462652	.	G	T	76	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=2;HapScore=4;MGOF=5;MMLQ=19;MQ=60.0;NF=1;NR=2;PP=76;QD=36.9237375157;SC=CGCGTCCGCCGAAGTTGGAGC;SbPval=0.33;Source=Platypus;TC=16;TCF=2;TCR=14;TR=3;WE=85462673;WS=85462642;set=Platypus	GT:AD:AF:DP	0/1:13,3:0.19:16
chr1	85462665	.	T	G	76	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=3;HapScore=4;MGOF=5;MMLQ=24;MQ=60.0;NF=1;NR=2;PP=76;QD=36.9237375157;SC=GTTGGAGCCCTGCAAAGCGGG;SbPval=0.37;Source=Platypus;TC=14;TCF=2;TCR=12;TR=3;WE=85462673;WS=85462642;set=Platypus	GT:AD:AF:DP	0/1:11,3:0.21:14
chr1	85488030	rs2028304	G	A	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	85488154	rs2039814	G	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	85537502	rs4907131	T	A	323.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.24;ReadPosRankSum=-1.272;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	85537522	rs4907132	T	C	491.53	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr1	85538637	.	CAA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.417;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	85538655	rs10664942	A	AG	358	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.55;ReadPosRankSum=1.728;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	85547945	rs7534574	T	C	560.78	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr1	85550156	rs146215625	A	AAT	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	85551468	rs111823967	A	ATCAGTTTTTCT	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	85555672	rs1417351	A	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	85559118	rs11304107	CT	C	636.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:98,44:0.31:142
chr1	85559452	rs709762	A	G	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.442;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:314,98:0.24:412
chr1	85561546	rs709766	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:49,15:0.23:64
chr1	85564138	rs817489	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	85573705	rs11427716	A	AC	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.101;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.031;QD=3.91;ReadPosRankSum=0.738;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:90,20:0.18:110
chr1	85574021	rs709759	G	A	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	85575838	rs376334573	TA	T	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.747;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=4.491;QD=2.05;ReadPosRankSum=-2.100;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:77,31:0.29:108
chr1	85589939	rs11356964	GT	G	7685.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	85592126	rs817474	G	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	85595645	rs1020770	C	T	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr1	85598527	rs36118758	TC	T	2358.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	85624549	rs709786	C	T	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	85624864	rs817412	G	A	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	85647713	rs817444	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	85648620	rs817443	C	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	85648905	rs11161539	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	85723318	rs17382844	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.699;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr1	85725353	rs112918702	GCCGGAAA	G	1014.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr1	85741921	rs2735594	G	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=2.221;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	85742012	rs11576939	G	C	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:16,56:0.78:72
chr1	85742155	rs78416998	G	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	85787114	rs233116	A	T	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.52;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	85787114	.	AACCG	TACCC,TACCG	340	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=8,27;NR=1,4;PP=125,340;QD=19.8297638736;SC=TCTTGCCGGCAACCGGGGGGG;SbPval=0.7;Source=Platypus;TC=31;TCF=27;TCR=4;TR=9,31;WE=85787126;WS=85787104;set=Platypus	GT:AF:DP	0/1:0.29:31
chr1	85787118	rs3087894	G	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=1.234;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr1	85787323	rs1498375	T	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr1	85787334	rs1498374	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr1	85790633	rs1498373	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr1	85816134	rs2230820	T	C	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.030;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:68,22:0.24:90
chr1	85816224	rs41301261	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.212;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr1	85817295	rs2076699	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.709;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:189,44:0.19:233
chr1	85930272	rs4001153	GAC	G	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	86046561	rs2297140	C	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr1	86046924	rs2297141	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	86144211	rs115494310	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	86146672	rs3767162	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	86167957	rs1764298	C	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	86171692	rs370671489	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.587;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	86202016	rs1481200	C	T	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	86202102	rs12037785	C	A	3924.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:65,172:0.73:237
chr1	86210241	rs11387251	G	GT	787.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	86210546	rs7547023	G	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	86211325	rs10747324	G	A	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	86246849	rs313722	A	C	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	86249063	rs313724	C	T	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	86249911	rs313725	A	G	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	86252025	rs12746325	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.037;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr1	86313536	rs1962482	G	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.032;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	86334070	rs313775	T	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	86334316	rs17411495	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr1	86334675	rs11161693	T	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	86340193	rs11161696	G	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	86340523	rs1564518	T	C	209.84	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	86340524	rs1564517	G	A	52.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=-1.834;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	86340794	rs1564516	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	86340880	rs1564515	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr1	86340892	rs7536101	A	G	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr1	86355414	.	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.665;QD=1.12;ReadPosRankSum=-0.290;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:65,22:0.25:87
chr1	86361802	rs7541806	C	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr1	86375654	rs1502657	C	G	3627.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:57,160:0.74:217
chr1	86375840	rs41306625	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	86435850	rs7538391	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr1	86482922	rs557928	A	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr1	86487914	rs11161721	C	A	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.580;QD=3.62;ReadPosRankSum=0.450;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:134,47:0.26:181
chr1	86487981	rs516213	G	A	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	86487992	rs5775882	A	AACAG	3720.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	86488232	rs641712	G	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:35,82:0.70:117
chr1	86497769	rs582141	C	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	86512536	rs60891279	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.230;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:80,28:0.26:108
chr1	86515958	rs17415366	C	T	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:8,42:0.84:50
chr1	86557967	rs11161732	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-0.158;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr1	86590915	rs2174767	G	A	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	86591837	rs11161747	G	A	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	86621992	rs1999747	C	A	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	86814688	rs272491	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	86818572	rs272496	T	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	86820267	rs1182098	C	T	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	86821194	rs10676142	A	ACT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	86821910	rs68126437	CTAAAA	C	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	86838158	rs421105	C	T	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	86847955	rs272516	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr1	86850624	rs2273941	T	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	86852621	rs2390096	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.200;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr1	86891179	rs2210641	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-1.931;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	86896541	rs3737672	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.437;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.752;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:134,21:0.14:155
chr1	86898315	rs3737159	T	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.745;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-2.047;SOR=1.544;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr1	86913265	rs2275001	C	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.683;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:139,42:0.23:181
chr1	86939063	rs146279529	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=1.893;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	86939130	rs2145412	C	T	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	86939390	rs2180762	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	86952324	rs2734705	A	G	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:14,70:0.83:84
chr1	86956785	rs2753342	C	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	86959173	rs2791494	T	C	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:33,91:0.73:124
chr1	86959796	rs1321689	C	T	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:18,73:0.80:91
chr1	86965419	rs1882753	T	C	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:16,90:0.85:106
chr1	87025819	rs2231582	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.275;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:89,27:0.23:116
chr1	87036746	rs772599	C	A	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	87038240	rs2231597	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	87045896	rs4001061	TCCTACA	T	14457.73	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	87458695	rs10873810	G	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	87538182	rs34124612	TTG	T	3194.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	87538200	rs10782592	G	A	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	87549858	rs2798675	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	87558066	rs66709085	CCACATA	C	220.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	87563668	rs1199677	G	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	87570398	rs1621247	G	A	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	87598117	rs6686259	T	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.148;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=1.172;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:107,23:0.18:130
chr1	87599697	rs6576865	G	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-1.264;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:103,29:0.22:132
chr1	89236029	rs7541301	T	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=7.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.980;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:86,16:0.16:102
chr1	89271574	rs786906	T	C	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.979;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:144,40:0.22:184
chr1	89280965	rs786918	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr1	89322982	rs2794318	G	A	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	89426902	rs3738055	G	A	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:43,155:0.78:198
chr1	89427252	rs10922530	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	89430420	rs1536259	A	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=0.062;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chr1	89473453	rs114910977	A	G	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:37,138:0.79:175
chr1	89475230	rs4142706	T	G	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:14,68:0.83:82
chr1	89477830	rs6659829	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr1	89478854	.	C	G	97	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=3;MGOF=0;MMLQ=28;MQ=60.0;NF=3;NR=1;PP=97;QD=32.9428031368;SC=GGAAGTACTACGAAGGGGACT;SbPval=0.19;Source=Platypus;TC=19;TCF=18;TCR=1;TR=4;WE=89478876;WS=89478848;set=Platypus	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	89478868	rs113490655	G	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr1	89479063	rs4656077	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.856;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chr1	89479074	rs4656078	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.843;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr1	89479758	rs3795543	T	C	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.200;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:222,61:0.22:283
chr1	89486037	rs7555039	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.422;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chr1	89520329	rs72054220	GAAAAAC	G	565.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.116;QD=5.01;ReadPosRankSum=0.106;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:92,21:0.19:113
chr1	89520574	rs10922554	C	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=2.024;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:114,24:0.17:138
chr1	89520636	rs10922555	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=0.944;QD=3.80;ReadPosRankSum=-0.863;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr1	89520643	rs10922556	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.705;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=0.771;QD=3.54;ReadPosRankSum=-0.375;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:45,8:0.15:53
chr1	89522512	rs4376712	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.617;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=5.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=2.520;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:113,15:0.12:128
chr1	89522646	rs1048425	G	C	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.289;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:99,39:0.28:138
chr1	89574026	rs1329119	G	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	89575677	rs2026043	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	89579941	rs2230338	T	C	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	89582690	rs1803632	G	C	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	89583544	rs2209956	T	C	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	89597755	rs942442	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	89607479	rs6666846	G	T	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.29;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	89607486	rs6658235	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	89615979	rs586609	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	89618472	rs10710842	GA	G	161.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=10.263;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=0.992;QD=7.01;ReadPosRankSum=-0.946;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	89630587	.	G	T	169.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr1	89637578	rs676913	G	A	6949.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	89650850	rs623134	A	T	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr1	89652071	rs561042	TC	CT	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.778;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-6.189;QD=6.08;ReadPosRankSum=-1.143;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:104,26:0.20:130
chr1	89652078	rs608339	A	T	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-6.044;QD=6.12;ReadPosRankSum=-0.744;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:103,27:0.21:130
chr1	89652087	rs1142890	CC	TG	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-6.341;QD=6.03;ReadPosRankSum=0.581;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:105,25:0.19:130
chr1	89652090	rs1142888	T	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-6.341;QD=5.36;ReadPosRankSum=0.729;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:105,25:0.19:130
chr1	89652094	rs1142887	G	A	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-6.300;QD=5.49;ReadPosRankSum=0.859;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:108,26:0.19:134
chr1	89652097	rs1142886	C	T	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-6.273;QD=5.55;ReadPosRankSum=1.159;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:107,26:0.20:133
chr1	89652102	rs655260	A	T	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-6.103;QD=5.94;ReadPosRankSum=0.992;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:101,26:0.20:127
chr1	89652846	rs12129014	G	A	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr1	89661228	rs650448	T	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	89726592	rs535351	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.170;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	89727870	rs76346754	A	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	89729566	.	GC	G	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.323;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:226,31:0.12:257
chr1	89732237	rs61729628	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.447;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr1	89732535	rs150724949	AAT	A	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=7.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.426;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	89845926	rs11361992	GT	G	4048.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	89847372	rs4658359	G	T	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	89847411	rs4658360	C	T	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	89847444	rs4658146	A	G	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	89849201	rs928652	C	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	89849350	rs928653	G	A	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	89849441	rs928654	T	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	89849574	rs928655	G	A	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	89849742	rs959460	A	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	89851100	rs369061637	G	GT	433.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-1.213;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,25:0.89:28
chr1	89885854	rs6673154	G	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	89888530	rs4261099	C	T	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	89888552	rs4282800	T	A	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	89888585	rs4415545	C	G	13362.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.56;QD=44.99;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	89888588	rs4506445	G	T	13445.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.61;QD=44.38;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	90048132	rs2279085	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	90049040	rs36084789	A	G	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=6.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-2.372;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:169,48:0.22:217
chr1	90058242	rs34096201	G	GT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.270;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr1	90171835	rs6657969	C	T	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	90178743	rs474536	A	G	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	90470915	rs11808927	T	A	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	90486412	rs2816881	T	G	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	90493026	rs10922744	G	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	91447985	rs358691	C	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	91727781	rs580070	C	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.385;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	91728053	rs585898	G	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	91728202	rs555432	T	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	91739208	rs281964	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	91739414	rs281963	G	A	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	91742055	rs281959	T	C	145.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	91781304	rs281991	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	91781413	rs281992	T	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr1	91781644	rs11589490	C	G	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.992;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr1	91782031	rs11584478	T	C	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr1	91784887	rs10493845	G	A	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:33,82:0.71:115
chr1	91793877	rs281972	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	91813184	rs281936	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	91841301	rs282036	T	C	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	91846374	rs282033	C	A	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	91846595	rs5776097	T	TA	255.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	91851253	rs282026	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	91859795	rs282009	T	C	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.99;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	91859795	.	TATGTGA	CATGTGA,CATGTGG	879	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=47,33;NR=36,28;PP=126,879;QD=1.93700256081;SC=TTGCCAGCAATATGTGATAAG;SbPval=0.53;Source=Platypus;TC=83;TCF=47;TCR=36;TR=83,61;WE=91859809;WS=91859785;set=Platypus	GT:AF:DP	0/1:1.00:83
chr1	91859801	rs11165778	A	G	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=1.025;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:20,74:0.79:94
chr1	91870626	rs55841380	C	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr1	91967142	rs13447458	G	GC	358.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr1	91973557	rs553606	T	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	91978963	rs13447511	T	TAA	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	91980447	rs483532	A	G	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:49,148:0.75:197
chr1	91989572	rs488126	T	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	92108899	rs2493202	C	T	8940.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	92149277	rs1131243	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=10.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=1.984;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr1	92163786	rs2296621	G	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	92174260	rs284878	A	G	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	92177938	rs1805113	A	G	3484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=0.341;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,150:0.80:188
chr1	92184814	rs7524066	G	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr1	92185657	rs1805112	C	T	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr1	92195601	rs10783002	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	92200593	rs11165376	A	G	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.412;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:84,20:0.19:104
chr1	92200597	rs12124904	G	A	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:19,79:0.81:98
chr1	92200627	rs10874913	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	92224067	rs3738441	C	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:11,63:0.85:74
chr1	92262874	rs2810904	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=5.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=1.012;SOR=1.650;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr1	92428495	rs10783071	C	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	92430435	.	CGT	C	229.75	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	92446112	rs11165911	T	C	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	92446398	rs2303967	T	A	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr1	92447004	rs10875104	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	92457843	rs10747493	C	T	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	92568263	rs527412	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	92573670	rs11166163	G	A	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:14,68:0.83:82
chr1	92646021	rs1483022	G	A	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	92647223	rs560389	A	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	92647532	rs565156	C	A	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	92649335	rs569593	A	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	92711067	rs3131827	A	T	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	92711235	rs74948025	A	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.051;SOR=0.259;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr1	92712266	rs974924	C	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	92712598	rs35752451	GAA	G	4173.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	92735359	rs1487540	T	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	92755943	rs3103178	G	A	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	92764828	rs10875348	T	A	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	92765848	rs1542685	A	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=26.99;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	92799151	rs1487537	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	92852504	rs10747411	A	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.25;QD=24.51;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	92944314	.	C	CAGAGAG	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.55;ReadPosRankSum=0.505;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	92946479	rs11164605	G	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	92979092	rs146230362	ATATATATATATATATATATATATATATATATG	A	645.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.98;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	92979354	rs6603979	A	G	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	93029453	rs6656432	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	93029483	rs139571769	T	A	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	93071048	rs2050597	G	T	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	93089823	rs7514716	T	C	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	93128514	rs11411366	T	TA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.13;ReadPosRankSum=0.425;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	93128854	rs10747450	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	93160902	rs2391199	T	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	93163385	rs7418336	A	G	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	93163633	rs1017008	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	93167610	rs10218567	C	T	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	93167854	rs10218670	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	93306317	rs10874744	G	A	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	93426866	rs945629	T	C	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.79;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	93426869	rs1415069	G	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-0.567;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr1	93545157	rs2815419	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	93580402	rs11164874	T	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	93580581	rs2815427	G	C	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	93580992	rs566843	C	T	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,53:0.82:65
chr1	93581024	rs2295423	T	C	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:20,113:0.85:133
chr1	93583818	rs34049352	CT	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=13.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.784;SOR=2.795;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	93602194	rs2281524	C	T	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	93620393	rs1060622	G	A	5098.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:68,225:0.77:293
chr1	93621483	rs1057257	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	93646207	rs2297707	T	C	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:38,113:0.75:151
chr1	93649732	rs6682670	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr1	93659350	rs2815411	A	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	93672723	rs2815413	A	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr1	93676314	rs555161	A	G	278.28	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr1	93676578	rs797676	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	93687091	rs797661	G	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=6.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=0.847;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	93691855	.	GTTT	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=6.166;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.333;QD=2.58;ReadPosRankSum=2.099;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr1	93698222	rs661566	C	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.34;ReadPosRankSum=-1.456;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr1	93712532	rs670650	G	A	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	93744055	rs10874767	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-2.898;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr1	93998640	rs34814765	AT	A	1729.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	94012287	rs237425	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	94041787	rs25569	G	GAC	1802.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	94312482	rs5776191	T	TC	15846.73	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr1	94312528	rs147446599	G	GC	13289.73	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	94312533	rs202198870	G	GC	12779.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	94312542	.	G	GC	7957.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=-0.044;QD=30.84;ReadPosRankSum=0.224;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:2,256:0.99:258
chr1	94312543	.	C	CCG	2968	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=1;MGOF=29;MMLQ=24;MQ=60.0;NF=17;NR=60;PP=2968;QD=20;SC=GCGGCGCTCGCGCGCAGGTCC;SbPval=0.47;Source=Platypus;TC=80;TCF=17;TCR=63;TR=77;WE=94312592;WS=94312518;set=Platypus	GT:AD:AF:DP	1/1:3,77:0.96:80
chr1	94312544	.	G	C	2962	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=1;MGOF=29;MMLQ=22;MQ=60.0;NF=55;NR=59;PP=2962;QD=20;SC=CGGCGCTCGCGCGCAGGTCCA;SbPval=0.09;Source=Platypus;TC=152;TCF=56;TCR=96;TR=114;WE=94312592;WS=94312518;set=Platypus	GT:AD:AF:DP	1/1:38,114:0.75:152
chr1	94312544	.	G	GC	7957.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=-0.045;QD=31.83;ReadPosRankSum=0.319;SOR=1.534;set=HC	GT:AD:AF:DP	1/1:2,248:0.99:250
chr1	94312554	.	A	AG	10762.73	.	AC=2;AF=1.00;AN=2;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	94312558	.	G	GC	707.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=220;set=Intersection	GT:AD:AF:DP	0/1:173,32:0.16:205
chr1	94312559	.	CGGCTGGGTCGGGCG	C	6637.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.659;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.430;QD=32.07;ReadPosRankSum=1.494;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:34,173:0.84:207
chr1	94312566	rs2391318	G	T	758.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.411;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.450;QD=3.68;ReadPosRankSum=-2.155;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:173,33:0.16:206
chr1	94312567	rs2391319	T	C	758.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.780;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.450;QD=3.68;ReadPosRankSum=-2.253;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:173,33:0.16:206
chr1	94312571	.	G	GC	751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.823;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.444;QD=3.67;ReadPosRankSum=-2.432;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:173,32:0.16:205
chr1	94312572	.	CGCGGCGGCCGGG	C	2968	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=4;HapScore=1;MGOF=29;MMLQ=24;MQ=59.64;NF=9;NR=53;PP=2968;QD=20;SC=CTGGGTCGGGCGCGGCGGCCG;SbPval=0.54;Source=Platypus;TC=62;TCF=9;TCR=53;TR=62;WE=94312592;WS=94312518;set=Platypus	GT:AD:AF:DP	1/0:0,62:1.00:62
chr1	94312573	.	G	GC	727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.430;QD=3.58;ReadPosRankSum=-2.221;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:173,30:0.15:203
chr1	94312576	.	G	GC	9592.73	.	AC=2;AF=1.00;AN=2;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=47.49;SOR=1.574;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	94312579	.	G	GT,GC	8399.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;QD=43.08;SOR=1.561;set=HC	GT:AD:AF:DP	1/2:0,173,22:0.89,0.11:195
chr1	94312584	rs200230769	G	GC	8491.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=46.66;SOR=1.545;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	94335194	rs1051394	A	T	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.09;ReadPosRankSum=-0.640;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr1	94335643	.	G	GA	43	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9998;HP=7;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=43;QD=34.0;SC=AATCTAGGGAGAAAAAATGGC;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=94335651;WS=94335633;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	94336498	rs57384286	C	CA	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	94341137	rs2273166	C	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,27:0.84:32
chr1	94341267	rs2273165	A	G	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:34,138:0.80:172
chr1	94342564	rs3747965	C	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:45,136:0.75:181
chr1	94343023	rs2391322	A	G	5207.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:65,210:0.76:275
chr1	94343233	rs3789457	T	C	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	94344580	rs6675820	C	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.215;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:171,49:0.22:220
chr1	94344716	rs2235971	C	T	10762.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:154,467:0.75:621
chr1	94344840	rs6681078	A	C	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.425;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.691;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:105,35:0.25:140
chr1	94360107	rs769211	C	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-1.818;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	94367097	rs7515191	G	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=1.163;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr1	94374742	rs743119	C	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	94471075	rs1762114	A	G	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	94471154	rs4147863	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:63,21:0.25:84
chr1	94473029	rs67601772	TGTTGG	T	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	94473605	rs3789386	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr1	94473845	rs2275029	T	C	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.135;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:180,34:0.16:214
chr1	94473864	rs1800739	C	T	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-1.031;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:199,42:0.17:241
chr1	94473896	rs2275031	G	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.105;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:173,37:0.18:210
chr1	94474185	rs2275032	A	C	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.073;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:102,19:0.16:121
chr1	94474328	rs4147857	T	C	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=5.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.879;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:258,71:0.22:329
chr1	94474452	rs4147856	T	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:92,33:0.26:125
chr1	94476203	rs112614086	CT	C	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.773;QD=6.22;ReadPosRankSum=-0.250;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chr1	94476388	rs1801574	C	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.425;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:191,44:0.19:235
chr1	94476555	rs537831	G	A	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr1	94476991	rs4147899	CT	C	747.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:122,43:0.26:165
chr1	94480037	rs2275033	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.980;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	94487285	rs55860151	AAC	A	1904.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:10,55:0.85:65
chr1	94487354	rs472908	G	A	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=6.270;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.970;QD=2.07;ReadPosRankSum=-1.716;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:132,31:0.19:163
chr1	94495930	rs547806	T	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	94496253	rs2297671	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.865;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr1	94528363	rs4147833	C	T	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:23,89:0.79:112
chr1	94544135	rs4147887	A	AC	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	94544276	rs4147830	G	A	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:36,117:0.76:153
chr1	94544326	rs3215952	GT	G	2539.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:27,81:0.75:108
chr1	94545160	rs2275035	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	94549083	rs574741	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr1	94568822	rs2297636	T	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	94578548	rs4847281	T	C	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	94639337	rs1330858	A	G	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.57;SOR=1.995;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	94639447	rs1999272	C	T	7127.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	94643531	rs1048854	T	C	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:37,159:0.81:196
chr1	94667430	rs5776210	G	GA	310.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=-0.211;SOR=0.560;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr1	94668046	rs1541099	C	T	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	94674723	rs6684237	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	94924046	rs2147794	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr1	94930345	rs16946	G	A	1643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=-1.115;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:34,73:0.68:107
chr1	94941376	rs681187	G	A	186.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	94980671	rs3118109	C	G	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	94982785	rs662813	A	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=2.166;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr1	94982810	rs337592	A	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,3:0.20:15
chr1	95001600	rs698946	A	C	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	95005758	rs13306321	A	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.469;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:148,53:0.26:201
chr1	95285897	.	C	CCCCAGA	2845.73	.	AC=2;AF=1.00;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr1	95286085	rs11165252	G	A	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	95286094	rs10782992	G	T	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	95290305	rs6541372	T	C	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	95290315	rs36094793	A	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	95291366	rs10874894	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	95305440	rs859120	A	G	6960.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	95330372	rs859098	G	A	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	95332864	rs12137650	C	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr1	95333068	rs859096	G	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	95358096	rs859063	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.103;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:60,10:0.14:70
chr1	95367108	rs375560790	ACC	AC,A	377.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=15;set=Intersection	GT:AF:DP	1/1:0.93:15
chr1	95367136	rs859059	G	A	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	95367649	rs859058	T	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=6.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.880;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:129,28:0.18:157
chr1	95367894	rs859057	A	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	95368574	rs10640200	T	TAA	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=10.43;ReadPosRankSum=1.834;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr1	95369211	rs859054	T	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	95427041	rs377385319	ATT	A	1480.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr1	95428455	.	CT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.757;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr1	95614215	rs76921353	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr1	95614452	.	A	G	277.56	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	95615678	rs76086699	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.89;ReadPosRankSum=-0.365;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	95615888	rs35206271	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr1	95696612	rs6663164	C	T	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	95700044	rs72966572	G	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	95705615	rs640527	G	A	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	95709821	rs259358	T	C	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	95709939	rs2296308	T	G	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	97189091	rs3762411	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	97189288	rs3762410	T	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	97236130	rs3762409	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	97272456	rs6699932	A	G	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:26,106:0.80:132
chr1	97272531	rs368630888	T	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,64:0.76:84
chr1	97278804	rs273886	G	A	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	97547831	rs290854	G	A	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	97771947	rs7556439	C	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	97915624	rs17376848	A	G	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-0.022;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:152,41:0.21:193
chr1	97981242	rs2811178	TG	CA	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	97981395	rs1801159	T	C	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:33,145:0.81:178
chr1	98039541	rs56293913	A	G	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.561;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr1	98165091	rs2297595	T	C	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.572;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:128,44:0.26:172
chr1	98348885	rs1801265	G	A	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:34,110:0.76:144
chr1	98349390	rs111231337	C	CA	858.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr1	98510679	.	G	GAAAC	726.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=5.363;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.172;QD=4.51;ReadPosRankSum=-1.322;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:134,27:0.17:161
chr1	98510847	rs74904371	C	T	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.158;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:174,49:0.22:223
chr1	99127205	rs12723363	A	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	99127392	rs9728148	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	99150635	rs9433747	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	99156904	rs183435886	T	A	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	99164246	.	CT	C	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=4.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.281;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr1	99225627	rs2019213	G	A	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	99387628	rs34854879	T	TA	2739.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:3,116:0.97:119
chr1	99418948	rs377156706	T	TGTGTGA	923.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.85;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:5,24:0.83:29
chr1	99470269	rs12057990	T	C	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	99762456	rs5776465	CT	C	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.437;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr1	99766506	.	C	A	3071.77	.	AC=1;AF=0.500;AN=2;DP=260;set=Intersection	GT:AD:AF:DP	0/1:115,144:0.56:259
chr1	99772096	.	C	T	3681.77	.	AC=1;AF=0.500;AN=2;DP=215;set=Intersection	GT:AD:AF:DP	0/1:60,153:0.72:213
chr1	100182884	rs6696586	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.085;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr1	100185282	rs6679013	G	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.386;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr1	100194305	rs7522921	C	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.888;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:82,25:0.23:107
chr1	100203571	rs7548709	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.355;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr1	100203597	rs7513916	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.846;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr1	100203648	rs7537296	C	T	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.509;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:106,27:0.20:133
chr1	100203693	rs7514021	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.026;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr1	100203902	rs10875245	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	100207818	rs41285734	C	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-0.857;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:92,15:0.14:107
chr1	100316589	rs2307130	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=1.157;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr1	100316765	rs663848	C	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	100329889	rs535461	G	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.812;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:161,32:0.17:193
chr1	100336361	rs2230306	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.085;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr1	100340225	rs634880	G	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.741;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:101,25:0.20:126
chr1	100342227	rs3736295	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=7.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.183;SOR=1.775;set=HC	GT:AD:AF:DP	0/1:95,17:0.15:112
chr1	100345409	rs2392077	C	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr1	100345413	.	C	T	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=-0.424;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:22,49:0.69:71
chr1	100346741	rs3736296	T	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.640;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr1	100350383	rs2234707	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	100353675	rs555929	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.164;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:182,31:0.15:213
chr1	100357141	rs2035961	T	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=0.682;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr1	100358200	rs594249	G	A	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.690;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:68,22:0.24:90
chr1	100366446	rs35956186	GTT	G	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.981;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr1	100376448	rs2274570	G	A	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-3.089;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr1	100376456	rs1541041	T	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-4.313;SOR=1.361;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr1	100381109	rs112476688	A	AT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.406;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr1	100533960	rs6687189	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.321;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr1	100542702	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=1.347;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	100575933	rs13375867	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.441;QD=1.55;ReadPosRankSum=0.315;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr1	100598866	rs472498	GC	AT	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	100617887	rs2784177	C	T	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	100626182	rs35699743	C	CT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=11.768;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.415;QD=2.04;ReadPosRankSum=-0.016;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr1	100671866	rs34229137	T	A	534.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.561;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=2.430;QD=7.53;ReadPosRankSum=0.036;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr1	100672060	rs12021720	T	C	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	100680593	rs11431894	C	CT	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.042;QD=9.73;ReadPosRankSum=1.375;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	100715454	rs3806235	G	A	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	100733207	rs60634058	G	GT,GTT	3934.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.469;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.322;QD=19.77;ReadPosRankSum=-0.137;SOR=1.272;set=HC	GT:AD:AF:DP	1/2:10,111,78:0.56,0.39:199
chr1	100733552	rs4298755	T	C	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	100750733	rs58046505	AGTTTT	A	3977.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	100817384	rs28361189	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.394;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr1	100818464	rs594529	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	100856479	rs28361213	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.090;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr1	100908577	rs78861171	A	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.538;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr1	100961779	rs149672640	ATT	A	454.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.93;ReadPosRankSum=0.000;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	100970346	rs10875295	T	C	5828.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:85,254:0.75:339
chr1	101005090	rs2809819	G	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.616;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:117,22:0.16:139
chr1	101190173	rs2392221	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.071;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:96,30:0.24:126
chr1	101194965	rs68164684	G	GT	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr1	101203827	rs3176879	G	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	101342497	rs2295280	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	101372607	rs4908106	C	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	101487373	rs201632964	A	AACAC	142.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.79;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	101704496	rs3737578	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr1	101704532	rs3737577	G	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr1	102271774	rs4907955	G	A	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	102312412	rs41287302	G	A	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	103354939	.	CTG	C	152	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=23;MQ=60.0;NF=3;NR=3;PP=152;QD=25.8333333333;SC=ACTTAAAGGACTGTGTGTGTG;SbPval=0.44;Source=Platypus;TC=18;TCF=11;TCR=7;TR=6;WE=103354950;WS=103354929;set=Platypus	GT:AD:AF:DP	1/0:12,6:0.33:18
chr1	103380393	.	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.97;ReadPosRankSum=0.589;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	103400491	rs11164641	GA	AT	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.951;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.054;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr1	103405892	rs17127270	G	A	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-0.548;SOR=1.477;set=HC	GT:AD:AF:DP	0/1:7,42:0.86:49
chr1	103427381	rs1012282	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.044;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr1	103427844	rs55682104	T	A	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-0.562;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr1	103428389	rs1841834	G	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	103435626	rs2061710	G	A	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	103435935	rs2253854	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.227;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=1.342;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	103444497	rs1903787	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.115;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:73,19:0.21:92
chr1	103444679	rs11164649	T	G	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:37,116:0.76:153
chr1	103449598	rs2615978	G	C	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	103455217	rs1463034	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	103461508	rs2622867	T	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	103462473	rs2786125	A	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	103462547	rs2622869	G	A	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.610;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:90,27:0.23:117
chr1	103463976	rs2622870	G	T	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	103467615	rs2929162	C	T	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	103468609	rs2251895	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.69;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	103468855	.	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=1.479;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr1	103471456	rs71752747	CCAT	C	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.807;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:114,23:0.17:137
chr1	103471734	rs139103462	AAAATAAAT	A,AAAATAAATAAATAAATAAAT	4253.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;QD=40.13;SOR=1.265;set=HC	GT:AD:AF:DP	1/2:0,28,78:0.26,0.74:106
chr1	103477819	rs2786122	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.491;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	103477825	rs35117641	A	AT	96.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	103483514	rs945748	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	103487244	rs34587338	T	C	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.276;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:323,75:0.19:398
chr1	103487394	rs35291481	CT	C	1620.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.797;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=-0.258;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:8,86:0.91:94
chr1	103491461	rs12731843	T	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:55,19:0.26:74
chr1	103491569	rs12750407	G	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.402;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=16.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-2.729;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr1	103491572	rs12750147	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=16.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-2.910;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr1	103496620	rs7523441	G	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	103496805	rs36076089	GA	G	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.786;QD=8.84;ReadPosRankSum=0.310;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr1	103540489	.	A	G	21	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=21;QD=13.9428031368;SC=CAGTTAACAGATGACTACTTA;SbPval=1.0;Source=Platypus;TC=13;TCF=1;TCR=12;TR=4;WE=103540497;WS=103540479;set=Platypus	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	103544191	rs6668897	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.610;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr1	103573547	rs6691654	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	103573812	rs12025921	A	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.914;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	104076462	rs6697444	C	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=1.423;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:12,31:0.72:43
chr1	104076495	rs6702220	A	G	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=1.788;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr1	104076537	rs6702324	A	T	347.84	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr1	104080169	rs10736038	G	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=0.910;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	104084226	rs10881232	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-0.417;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	104086145	rs10785725	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	104089773	rs7529928	C	G	42.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.71;ReadPosRankSum=0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	104116413	rs17851840	T	C	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:25,118:0.83:143
chr1	104203066	rs138704923	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.48;QD=23.57;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	104297300	.	G	GTGATATTCTA	2833.73	.	AC=2;AF=1.00;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	107600579	rs11555268	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr1	107946324	rs71897263	CA	C	1257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=1.602;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:29,89:0.75:118
chr1	107979396	rs480392	A	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	108023589	rs4915045	A	C	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:17,104:0.86:121
chr1	108139003	rs3748702	C	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	108152332	rs1328208	T	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	108160260	rs5776894	GA	G	911.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:15,63:0.81:78
chr1	108299807	.	G	GTA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.07;MQRankSum=-0.755;QD=2.34;ReadPosRankSum=0.612;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	108299809	.	G	GTGTATA,GTATA	1293.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=38;set=Intersection	GT:AF:DP	1/1:0.97:31
chr1	108307642	rs7514025	C	T	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	108307727	rs7528153	T	A	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	108313258	rs6583048	C	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	108315256	rs7416884	G	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	108315305	rs4611048	C	T	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	108507541	rs71796067	GGCC	G	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.389;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr1	108766424	rs3879436	A	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-2.609;QD=2.59;ReadPosRankSum=2.143;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:96,27:0.22:123
chr1	108771721	rs79996376	T	C	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:103,71:0.41:174
chr1	109170746	rs2133198	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	109200268	.	C	CA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=15.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.581;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr1	109241669	rs2297563	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	109255513	rs3006864	G	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	109260357	rs4970804	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-1.285;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:124,31:0.20:155
chr1	109261509	rs17553619	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:124,41:0.25:165
chr1	109265029	rs4423040	G	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.446;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr1	109268573	rs4494160	T	C	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:25,113:0.82:138
chr1	109289353	rs1124427	C	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	109289487	rs6604120	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.32;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	109299453	rs1277044	C	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	109301250	rs1277042	G	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	109315211	rs1623641	A	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	109321824	rs1759481	G	T	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	109325028	rs1277051	T	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	109350198	.	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-2.051;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr1	109358958	rs6696787	T	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	109366370	rs7522260	C	T	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	109369791	rs11102505	G	A	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	109369797	rs11102506	T	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.63;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	109369915	rs7551421	G	T	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	109372968	rs1277221	T	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	109377070	rs12060255	C	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	109377157	rs112859436	T	TA	1102.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:8,63:0.89:71
chr1	109377283	rs12063387	A	G	1566.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.82;MQRankSum=0.453;QD=24.10;ReadPosRankSum=-0.713;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:2,63:0.97:65
chr1	109377334	rs12061417	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr1	109377537	rs12057309	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	109391486	rs1149142	G	A	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	109395105	rs1277207	C	T	5866.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:64,252:0.80:316
chr1	109440215	rs41279678	G	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=2.186;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:207,47:0.19:254
chr1	109456850	rs1664419	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-1.498;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	109461078	.	A	G	87.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr1	109465165	rs35029887	ACTT	A	2147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-0.013;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:223,68:0.23:291
chr1	109466562	rs151310940	TTTTTTTG	T	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.265;QD=3.94;ReadPosRankSum=-0.146;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr1	109466858	rs705268	G	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=9.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.788;SOR=2.020;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr1	109474221	rs1769740	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.176;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr1	109477653	rs839850	G	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	109479978	rs168107	G	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.174;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:176,41:0.19:217
chr1	109482220	rs338480	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.251;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr1	109482826	rs338479	C	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.169;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:108,35:0.24:143
chr1	109483975	rs193139	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.510;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:84,14:0.14:98
chr1	109486016	rs17014489	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.217;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.694;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr1	109486196	rs338466	A	G	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=2.580;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:239,45:0.16:284
chr1	109486240	rs3215062	TA	T	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.889;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:214,52:0.20:266
chr1	109490457	rs839543	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr1	109529322	rs61696019	T	TAA	2401.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	109545046	rs184606	C	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	109608870	rs3217403	CACTT	C	3052.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	109633377	rs528661	C	G	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.730;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:188,47:0.20:235
chr1	109635398	rs512671	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=10.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.925;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr1	109656420	.	T	C	22	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=22;QD=18.9237375157;SC=ATGCTTCCACTGTGTTCTTCA;SbPval=0.87;Source=Platypus;TC=10;TCF=5;TCR=5;TR=3;WE=109656428;WS=109656410;set=Platypus	GT:AD:AF:DP	1/0:7,3:0.30:10
chr1	109656946	rs667524	T	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=7.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.018;SOR=1.348;set=HC	GT:AD:AF:DP	0/1:124,38:0.23:162
chr1	109656981	rs586530	T	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-1.270;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:110,40:0.27:150
chr1	109704390	rs643197	C	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	109704618	rs678238	A	G	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	109714750	rs2297758	T	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	109727475	rs649531	T	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	109727529	rs12036884	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	109734157	rs606066	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	109734225	rs643785	G	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	109734541	rs645128	C	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	109735298	rs658779	T	C	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	109735416	rs659543	A	C	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.171;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	109735504	rs659659	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	109737063	rs2359246	C	T	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	109737090	rs2359245	G	A	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	109737132	rs2359244	T	C	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	109737172	rs2359243	C	T	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	109737314	rs2359242	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	109737320	rs2359241	G	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	109740310	.	A	AGAGAGAGTGTGT	2357	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=28;MQ=61.14;NF=0;NR=14;PP=2357;QD=168.642857143;SC=CTTGTTTGAGAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=37;TCF=1;TCR=36;TR=14;WE=109740319;WS=109740300;set=Platypus	GT:AD:AF:DP	1/0:23,14:0.38:37
chr1	109740473	rs3818508	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.58;ReadPosRankSum=0.308;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr1	109740548	rs2296696	G	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	109742452	rs913178	C	T	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	109742485	rs913179	G	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	109743622	rs3736956	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr1	109745353	.	C	T	653.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr1	109745618	rs1052878	T	C	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	109771063	rs683182	T	C	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	109771881	rs657511	G	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	109773427	.	C	CA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.988;QD=2.83;ReadPosRankSum=0.083;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr1	109778577	rs658092	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	109779556	rs631927	T	A	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	109779621	rs11439617	T	TC	1723.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	109792735	rs144034706	A	ACGC	2956.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:41,127:0.76:168
chr1	109794252	rs454107	T	C	14588.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr1	109795026	rs413380	T	C	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	109795608	rs437444	T	C	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	109796053	rs2359414	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr1	109804646	rs4970833	G	A	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	109806442	rs1337248	C	A	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	109806834	rs6698843	C	T	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	109807099	rs6689614	G	A	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	109813020	rs3895559	G	A	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr1	109813236	rs111491315	TTCCCAGTCTTGGGG	T	10727.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	109816176	rs441853	A	C	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	109824250	rs35358959	G	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.099;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:116,35:0.23:151
chr1	109825360	rs643457	C	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	109836835	rs3738777	A	G	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:28,164:0.85:192
chr1	109836842	rs646335	C	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.924;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:162,26:0.14:188
chr1	109838833	rs616899	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	109838918	rs629001	C	T	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	109839063	.	AT	A	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.808;QD=6.03;ReadPosRankSum=-1.232;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr1	109839392	rs604349	A	G	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:20,89:0.82:109
chr1	109839400	rs55660224	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.429;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:96,26:0.21:122
chr1	109839433	rs1278285	A	G	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	109839954	rs603624	G	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	109856842	rs372331171	TG	T	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=17.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-1.454;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr1	109883576	rs3217347	C	CAT	2437.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,61:0.69:88
chr1	109884775	rs2228604	T	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr1	109897100	rs72646560	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.544;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:93,15:0.14:108
chr1	109897103	rs11142	A	G	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:16,94:0.85:110
chr1	109898263	rs143094090	A	ACC	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=0.799;QD=21.23;ReadPosRankSum=0.327;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	109955569	rs17586966	T	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.467;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr1	109958035	rs1465607	T	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr1	109964605	rs17647543	T	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-1.790;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr1	110009434	rs2787015	A	C	2597.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:35,103:0.75:138
chr1	110009654	rs138525393	AC	A	5017.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:46,179:0.80:225
chr1	110018148	rs530565	C	T	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	110019439	rs62623713	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.270;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:110,26:0.19:136
chr1	110020341	rs57128261	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:50,15:0.23:65
chr1	110030945	rs1144593	A	G	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-1.501;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr1	110031188	rs12049330	T	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr1	110037838	rs749056	T	G	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=1.563;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:90,31:0.26:121
chr1	110086451	rs17575798	G	A	5270.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:55,205:0.79:260
chr1	110091271	rs3737182	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	110129582	.	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.429;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	110141421	rs1889470	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr1	110153198	rs6658641	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	110155524	rs2304355	T	C	1855.82	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:9,73:0.89:82
chr1	110199172	.	CTGTG	C	417.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	110200360	rs560018	T	C	8144.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr1	110201580	rs650985	C	T	8258.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	110201699	rs506008	T	C	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	110201809	rs562996	G	T	8986.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=44.93;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	110201812	rs563003	A	G	9151.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=44.43;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	110207482	rs670439	C	T	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-1.316;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	110210671	rs625456	G	T	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.461;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:142,42:0.23:184
chr1	110210780	rs530021	C	G	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=27.13;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	110211956	rs592792	C	T	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.939;QD=0.74;ReadPosRankSum=0.304;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:345,54:0.14:399
chr1	110252010	rs1292098	T	C	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	110252091	rs35677255	G	A	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	110255167	rs12736389	G	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:12,68:0.85:80
chr1	110255174	rs929166	T	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.906;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=10.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-2.008;SOR=2.294;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr1	110256220	rs7536162	A	C	5772.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:89,250:0.74:339
chr1	110257831	rs2227963	T	C	4354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=9.761;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-3.136;QD=31.56;ReadPosRankSum=0.099;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:33,105:0.76:138
chr1	110257835	rs78183574	CT	TC	4383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=6.394;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-3.119;QD=31.54;ReadPosRankSum=-0.609;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:33,106:0.76:139
chr1	110257947	rs7539980	A	C	6038.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:78,257:0.77:335
chr1	110279701	rs7483	C	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=7.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.429;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:76,24:0.24:100
chr1	110279821	rs1537234	C	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=10.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-2.215;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:209,58:0.22:267
chr1	110279914	rs1571858	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=2.008;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:108,27:0.20:135
chr1	110280252	rs36120609	ATCC	A	6201.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:46,153:0.77:199
chr1	110281941	rs10735234	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	110282972	rs1332018	G	T	8911.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	110293989	rs45612540	A	G	3316.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:44,143:0.76:187
chr1	110294577	rs2274536	A	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:24,68:0.74:92
chr1	110295643	rs1887546	G	T	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr1	110295772	rs1887547	T	C	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	110295890	rs1887548	C	G	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	110299550	rs2094469	A	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr1	110300441	rs3818562	G	A	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	110300504	rs10776700	A	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	110301766	.	AGTGTGT	A,AGT	1727.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=61;set=Intersection	GT:AF:DP	1/2:0.71,0.27:51
chr1	110302505	rs77854863	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.905;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr1	110466338	rs333970	C	A	16992.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:1,622:1.00:623
chr1	110466709	rs333971	T	C	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	110467745	rs333972	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	110558276	rs11384766	A	AC	1716.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	110590608	rs188583155	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	110592048	.	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.545;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.246;QD=2.37;ReadPosRankSum=-1.584;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	110709719	rs7527375	TG	CA	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.974;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-1.138;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr1	110716511	rs12747833	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.225;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr1	110735037	rs2603583	T	G	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,47:0.81:58
chr1	110738296	rs2784140	G	A	4782.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:60,209:0.78:269
chr1	110740273	rs2603581	G	T	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr1	110740688	rs2761445	C	T	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:38,118:0.76:156
chr1	110741081	rs2761446	C	G	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:17,73:0.81:90
chr1	110765535	rs611587	C	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chr1	110882444	rs814771	A	G	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:16,91:0.85:107
chr1	110883569	rs3738752	A	T	9880.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:104,416:0.80:520
chr1	110924353	rs3738750	G	A	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,48:0.79:61
chr1	110998766	rs7551116	T	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	110998854	rs7514102	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:28,82:0.75:110
chr1	111059812	rs368922210	CGA	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.655;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:72,13:0.15:85
chr1	111144526	rs4839071	T	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	111390624	rs112561357	AT	A	221.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.603;QD=13.86;ReadPosRankSum=-1.161;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr1	111436857	rs1578956	TC	GT	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=6.200;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.415;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:106,22:0.17:128
chr1	111441829	rs1803259	C	T	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.106;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:119,39:0.25:158
chr1	111441858	rs12030938	G	A	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:29,104:0.78:133
chr1	111661413	rs325916	T	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-1.016;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:126,25:0.17:151
chr1	111661528	rs325917	T	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.257;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:108,22:0.17:130
chr1	111662723	rs325918	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr1	111726213	rs694180	A	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	111726869	rs3795823	G	A	4316.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:49,186:0.79:235
chr1	111731215	rs2297702	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr1	111731318	rs78859767	A	T	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=0.196;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:22,84:0.79:106
chr1	111737183	rs660173	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	111737398	rs9970286	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr1	111739771	rs3833538	G	GCAGGACAAA	3234.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr1	111741322	rs35184750	G	A	3504.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:42,151:0.78:193
chr1	111742838	rs639306	G	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.46;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	111742841	rs12756391	A	G	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.46;ReadPosRankSum=0.068;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	111770423	rs755467	T	G	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	111770591	rs2147790	A	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	111773568	rs2255089	G	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.475;QD=2.47;ReadPosRankSum=-0.116;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:155,37:0.19:192
chr1	111778241	rs2764544	C	T	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	111778824	rs2251608	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr1	111783982	rs13721	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr1	111783996	rs2494007	A	G	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	111784148	rs2764551	T	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	111784783	rs41313997	G	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr1	111784816	rs11102221	G	A	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr1	111785930	rs1056825	T	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:6,41:0.87:47
chr1	111826023	rs6688201	C	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=9.707;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-0.698;QD=2.30;ReadPosRankSum=-0.925;SOR=1.704;set=HC	GT:AD:AF:DP	0/1:102,23:0.18:125
chr1	111826055	rs12140873	A	G	1769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.649;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.680;MLEAC=1;MLEAF=0.500;MQ=47.42;MQRankSum=1.192;QD=20.82;ReadPosRankSum=-1.447;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:16,69:0.81:85
chr1	111853060	rs143789088	A	AGCCAATCTAG	1204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=0.019;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:141,39:0.22:180
chr1	111853174	rs56387509	C	T	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:35,107:0.75:142
chr1	111854207	rs4839122	T	C	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	111854223	rs6537695	C	T	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:30,104:0.78:134
chr1	111854755	rs4423003	A	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	111854889	rs41282492	A	G	2038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.212;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:176,61:0.26:237
chr1	111854895	rs41282494	G	A	2039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=0.223;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:192,64:0.25:256
chr1	111854938	rs41282496	G	T	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=2.453;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:257,71:0.22:328
chr1	111857087	rs2786151	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:45,16:0.26:61
chr1	111857154	rs2786152	T	C	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	111857276	rs41391244	T	C	3998.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:58,182:0.76:240
chr1	111857951	rs61756687	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	111858195	rs149005668	C	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	111858200	rs41282500	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	111858444	rs2786156	C	T	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	111858499	rs6661725	A	G	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=6.409;MLEAC=1;MLEAF=0.500;MQ=60.95;MQRankSum=7.700;QD=2.58;ReadPosRankSum=-0.525;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:124,32:0.21:156
chr1	111858525	rs371155945	TAAATATAAGAATAAGA	T	571.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.319;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=11.513;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=8.255;QD=5.15;ReadPosRankSum=2.000;SOR=2.087;set=HC	GT:AD:AF:DP	0/1:90,21:0.19:111
chr1	111858542	rs376128132	CACTATCCTTGGCTT	C	640.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.836;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=7.871;MLEAC=1;MLEAF=0.500;MQ=61.68;MQRankSum=7.207;QD=7.36;ReadPosRankSum=2.031;SOR=1.818;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr1	111861714	rs2786161	T	A	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.429;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	111861822	rs17027410	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.001;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:106,25:0.19:131
chr1	111861841	rs2275253	A	G	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	111861974	rs2275254	T	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	111862078	rs12094378	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=1.629;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr1	111862952	rs2256721	T	G	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr1	111889457	rs11590153	A	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:51,16:0.24:67
chr1	111890240	rs142260201	C	CT	529.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.16;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	111891192	rs2184884	C	A	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=1.335;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:268,88:0.25:356
chr1	111892905	rs3820443	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=8.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.702;SOR=0.068;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr1	111892909	rs56255516	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=9.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.709;SOR=0.057;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr1	111893708	rs10158004	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=-0.431;QD=3.90;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	111893788	rs11354622	GT	G	124.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;MQRankSum=0.603;QD=10.41;ReadPosRankSum=1.451;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	111893958	rs1668	A	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.227;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:105,30:0.22:135
chr1	111957097	rs7825	C	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.963;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.661;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr1	111957245	rs9629	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.523;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:141,34:0.19:175
chr1	111957501	rs201350653	CTCACAGACTGATGACTCACAGGGG	C	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.071;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.167;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:93,16:0.15:109
chr1	111957547	.	GGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA	G	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.784;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.046;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:125,17:0.12:142
chr1	111957693	rs2485319	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.997;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:112,26:0.19:138
chr1	111966291	rs954739	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.051;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr1	111969386	rs151328843	G	T	1570.79	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:8,64:0.89:72
chr1	111969719	rs1264894	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:106,37:0.26:143
chr1	111970185	rs183295903	G	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr1	111970431	.	T	TAC	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.142;QD=10.85;ReadPosRankSum=1.166;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	111990265	rs2298185	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-1.243;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:76,13:0.15:89
chr1	111991845	rs1270853	C	A	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-1.329;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:223,56:0.20:279
chr1	111992095	rs1264899	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.146;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:92,21:0.19:113
chr1	111997063	rs12039127	G	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=1.920;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	112018657	rs6703267	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.135;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:92,21:0.19:113
chr1	112020222	rs3831358	GC	G	1059.86	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.25;ReadPosRankSum=-0.965;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:3,24:0.89:27
chr1	112020224	rs115634476	C	A	1068.89	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr1	112020238	rs2211494	A	C	1477.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=9.645;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.84;ReadPosRankSum=-2.072;SOR=0.407;set=HC	GT:AD:AF:DP	1/1:3,42:0.93:45
chr1	112028486	rs115977304	C	A	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=5.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.174;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:162,54:0.25:216
chr1	112028577	rs2275796	A	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr1	112029193	rs2252739	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	112029325	rs2800906	A	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	112029414	rs2800907	C	G	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	112032347	rs2789539	G	A	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	112033456	rs3831359	G	GA	1670.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	112033515	rs2252198	T	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.28;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	112033519	rs2252197	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	112042632	rs2229155	A	G	7820.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	112106444	rs1591712	G	A	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	112234084	rs10489469	G	T	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	112240038	.	CT	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.538;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:99,45:0.31:144
chr1	112269872	rs197434	G	A	15018.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:2,553:1.00:555
chr1	112298582	rs197392	A	G	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.172;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:72,30:0.29:102
chr1	112303260	rs169093	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr1	112305228	rs519155	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr1	112305406	.	TA	T	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=6.189;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.085;QD=2.90;ReadPosRankSum=0.316;SOR=1.403;set=HC	GT:AD:AF:DP	0/1:70,42:0.38:112
chr1	112308953	rs197412	T	C	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.385;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:123,36:0.23:159
chr1	112308972	rs197413	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=1.030;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:123,37:0.23:160
chr1	112309123	rs197414	C	A	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-2.557;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:256,85:0.25:341
chr1	112309331	rs85276	T	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=1.664;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:129,34:0.21:163
chr1	112321032	rs640029	T	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.630;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:90,28:0.24:118
chr1	112533728	rs59747755	G	A	2074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.47;ReadPosRankSum=1.133;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:30,96:0.76:126
chr1	112539061	rs2366125	A	G	3935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.738;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=-0.622;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:31,180:0.85:211
chr1	112991698	rs2256883	T	C	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:27,75:0.74:102
chr1	112999227	rs1175641	G	A	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:32,121:0.79:153
chr1	113033459	rs61820474	T	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.748;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr1	113052155	rs3790605	C	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.699;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr1	113052186	rs3790606	G	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.950;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	113063125	rs910697	A	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.001;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:98,25:0.20:123
chr1	113068577	rs35147679	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.970;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr1	113113167	.	G	GTATATA,GTATATATA	445.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=13;set=Intersection	GT:AF:DP	1/2:0.45,0.45:11
chr1	113113194	rs60579835	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	113113938	rs74862275	G	A	1077.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.60;ReadPosRankSum=0.000;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:7,48:0.87:55
chr1	113140583	rs12049572	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.458;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:72,16:0.18:88
chr1	113197203	rs3790599	A	G	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:38,93:0.71:131
chr1	113202417	rs2932536	G	A	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:22,65:0.75:87
chr1	113234456	rs2932532	G	A	3696.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:40,165:0.80:205
chr1	113236681	rs3748656	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.285;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:104,34:0.25:138
chr1	113237171	rs883593	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=2.488;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:115,20:0.15:135
chr1	113238201	rs17030647	T	C	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:38,102:0.73:140
chr1	113239382	rs17030651	G	A	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.257;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:186,41:0.18:227
chr1	113239478	rs2999158	T	C	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:19,94:0.83:113
chr1	113240790	rs12133583	G	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.256;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:42,9:0.18:51
chr1	113241052	rs2306940	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-1.669;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:132,27:0.17:159
chr1	113242488	rs3013431	C	T	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:45,165:0.79:210
chr1	113243048	rs6679	C	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=6.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.706;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:127,40:0.24:167
chr1	113244433	rs2279500	T	C	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	113246506	rs2306937	C	T	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	113247898	rs34731458	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=8.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.236;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	113248137	.	T	G	2660.77	.	AC=1;AF=0.500;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	0/1:28,111:0.80:139
chr1	113248365	rs954679	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr1	113252614	rs41310100	C	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	113254484	rs4839258	A	G	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	113255389	rs10857971	C	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	113255456	rs34611728	C	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.539;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr1	113255686	.	T	TTGTGTGTGTGTGTG	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.29;ReadPosRankSum=0.842;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	113264930	rs35995150	C	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-3.305;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:69,13:0.16:82
chr1	113456546	rs1049434	A	T	3559.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:30,146:0.83:176
chr1	113460676	rs149491709	CAATA	C	355.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.60;ReadPosRankSum=1.451;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	113460687	rs201021807	T	G	364.22	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.35;ReadPosRankSum=1.448;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	113616382	rs56062000	G	GA	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr1	113635696	rs76477170	T	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	113636924	rs1216802	T	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	113657092	rs1216793	A	C	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	113658887	rs1216791	G	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	113659065	rs10541977	ACT	A	8093.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	113662249	rs12568813	G	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	113666351	rs1728222	G	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	113666353	rs1728223	G	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.07;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	114092306	rs10858004	A	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr1	114137013	rs3834733	C	CAT	787.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr1	114161116	rs1217200	C	A	154.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=17.15;ReadPosRankSum=1.221;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr1	114191994	rs1743594	G	A	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:30,122:0.80:152
chr1	114224782	rs11438160	A	ATT	1842.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=12.12;ReadPosRankSum=-0.843;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:56,96:0.63:152
chr1	114234690	rs12138638	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr1	114240319	rs3835263	T	TA	3324.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:26,102:0.80:128
chr1	114249382	rs6698586	C	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:17,63:0.79:80
chr1	114267347	rs1230640	C	T	2909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=6.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.42;ReadPosRankSum=0.080;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:36,122:0.77:158
chr1	114280717	rs2273758	A	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chr1	114301335	rs61817589	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.003;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:131,22:0.14:153
chr1	114339956	rs34169583	C	CTAAA	625.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr1	114372332	rs57877024	TA	T	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.655;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	114377093	rs1599971	A	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr1	114377148	rs1970559	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr1	114377568	rs2476601	A	G	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	114400195	rs11386228	G	GA	433.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr1	114401231	rs1217418	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	114401904	rs1217419	T	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	114423653	rs1217382	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr1	114424601	rs1217381	C	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	114429340	rs1746860	T	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:18,91:0.83:109
chr1	114438951	rs1217401	A	G	4096.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:49,179:0.79:228
chr1	114680540	rs17032441	C	T	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=2.581;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:370,94:0.20:464
chr1	114940209	rs12062175	G	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=-0.732;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	114940632	rs5777192	CA	C	1202.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=0.590;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:6,65:0.92:71
chr1	114948281	rs6537825	A	G	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	114976224	rs12132214	A	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=1.863;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr1	115006230	rs34437690	TA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.085;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	115128087	rs222493	A	G	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	115144304	rs12730318	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.132;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.551;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr1	115144703	rs28398	A	G	7094.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	115161140	rs12145066	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.08;ReadPosRankSum=-1.210;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	115165472	rs222502	T	A	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	115166350	rs148413143	ATTGT	A	800.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	115168600	rs7541738	A	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-2.199;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:111,23:0.17:134
chr1	115218413	rs2070986	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	115220420	.	CTCCT	C	144.52	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=63.02;MQRankSum=0.431;QD=24.09;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	115222434	rs761755	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	115238016	rs68036474	CA	C	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.332;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr1	115256669	rs969273	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr1	115276978	rs57342611	GA	G	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.878;QD=1.54;ReadPosRankSum=-0.444;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:68,22:0.24:90
chr1	115284056	rs7537232	G	T	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=1.289;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:131,34:0.21:165
chr1	115398044	rs60659641	GC	G	1538.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	115399940	rs360614	T	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	115401136	rs360615	G	A	94.94	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.99;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	115420905	rs360636	T	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	115452848	rs12117860	G	A	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	115576023	rs10776792	A	G	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.05;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	115576175	rs12732821	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:28,94:0.77:122
chr1	115576482	rs28566771	C	G	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.939;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr1	115601615	rs7523818	A	G	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	115615358	rs753189	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.003;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr1	115631924	rs4240540	C	T	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	115829313	rs6330	G	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.973;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:139,47:0.25:186
chr1	116224925	rs10923176	G	A	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	116224940	rs10754330	C	A	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	116225180	rs10923177	A	C	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	116228220	rs12145661	C	T	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	116245809	rs6667224	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	116247790	rs3811003	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr1	116260532	rs2997741	A	T	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	116260544	rs3811001	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-1.950;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:115,23:0.17:138
chr1	116260604	rs2997742	G	A	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	116283343	rs9428083	A	G	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:38,120:0.76:158
chr1	116283526	rs7538337	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:28,80:0.74:108
chr1	116287634	rs10801969	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr1	116287651	rs10801970	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr1	116310818	rs4484922	G	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,33:0.85:39
chr1	116310967	rs4074536	T	C	5211.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:62,227:0.79:289
chr1	116311198	rs4074537	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	116534852	rs4046190	C	T	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	116569530	rs2488429	G	C	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	116577981	rs1935828	G	A	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	116607254	rs1281748	G	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	116609126	rs3833541	TC	T	5462.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	116940481	.	CT	C	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.334;QD=2.53;ReadPosRankSum=-1.054;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:93,43:0.32:136
chr1	117102649	rs1414273	C	T	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.33;ReadPosRankSum=1.377;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr1	117121865	rs12066192	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:40,11:0.22:51
chr1	117122285	.	G	GTCC	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=6.623;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=0.000;QD=1.97;ReadPosRankSum=2.684;SOR=2.272;set=HC	GT:AD:AF:DP	0/1:113,16:0.12:129
chr1	117122288	rs647711	G	C	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=11.452;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.000;QD=4.82;ReadPosRankSum=2.608;SOR=2.905;set=HC	GT:AD:AF:DP	0/1:126,29:0.19:155
chr1	117142531	rs631461	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr1	117236970	rs614477	G	C	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	117487270	rs56209138	G	A	254.56	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	117487710	rs10159095	AT	GA	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	117509981	rs12410651	G	A	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.48;ReadPosRankSum=-0.946;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr1	117509987	rs12403233	C	T	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.97;ReadPosRankSum=-0.225;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:11,26:0.70:37
chr1	117510061	rs12403245	C	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	117527645	rs36119404	GTCT	G	2431.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:11,61:0.85:72
chr1	117529458	rs10801922	G	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:32,150:0.82:182
chr1	117554421	rs3754112	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.410;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr1	117555898	rs2764849	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	117559726	rs2249265	A	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	117602960	rs2244501	C	A	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	117603188	rs2244406	G	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	117605130	.	C	CT	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=3.740;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.464;QD=2.49;ReadPosRankSum=-1.602;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr1	117617705	rs998532	A	G	6878.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:1,252:1.00:253
chr1	117618067	rs1289673	C	T	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	117618722	rs1289672	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	117622286	rs2801939	A	G	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	117628869	.	ATG	A	52	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=3;HapScore=2;MGOF=8;MMLQ=24;MQ=58.95;NF=2;NR=0;PP=52;QD=28.0;SC=TACCTCCAAAATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=15;TCF=14;TCR=1;TR=2;WE=117628878;WS=117628868;set=Platypus	GT:AD:AF:DP	1/0:13,2:0.13:15
chr1	117631391	rs1555792	T	C	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	117641668	rs2801935	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=12.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.384;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr1	117644058	rs41276572	A	G	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:42,95:0.69:137
chr1	117654858	rs1048635	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=0.594;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	117656088	rs1289658	A	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.224;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:74,15:0.17:89
chr1	117656276	rs1290530	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	117658075	rs79788159	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr1	117660608	rs1289655	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	117663913	rs3795655	C	T	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	117690272	rs10754339	G	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	117696037	rs2051047	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-1.875;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr1	117699714	.	GATAT	G	90	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=4;HapScore=2;MGOF=9;MMLQ=22;MQ=60.0;NF=0;NR=5;PP=90;QD=19.0;SC=CAATCATTTTGATATATATAT;SbPval=1.0;Source=Platypus;TC=16;TCF=1;TCR=15;TR=5;WE=117699725;WS=117699704;set=Platypus	GT:AD:AF:DP	1/0:11,5:0.31:16
chr1	117715288	rs79831973	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.80;ReadPosRankSum=-1.691;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr1	117715987	.	A	AACAC	86	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=86;QD=30.0;SC=GACACAGATGAACACACACAC;SbPval=0.42;Source=Platypus;TC=12;TCF=2;TCR=10;TR=3;WE=117715995;WS=117715977;set=Platypus	GT:AD:AF:DP	0/1:9,3:0.25:12
chr1	117957288	rs1289948	A	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	117984776	rs2306444	A	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	118053126	rs41506254	T	C	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=-2.146;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:13,45:0.78:58
chr1	118057646	rs12117874	T	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.163;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	118065284	rs34350477	C	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	118065919	rs12120771	T	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.191;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:96,22:0.19:118
chr1	118165328	rs844108	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	118165577	rs865443	C	G	5086.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:60,212:0.78:272
chr1	118165691	rs1630312	C	G	2931.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:42,117:0.74:159
chr1	118165973	rs1627787	C	T	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	118166096	rs2884587	C	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.098;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:164,34:0.17:198
chr1	118320644	rs1780028	A	G	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	118320859	rs1775749	T	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	118321119	rs114485606	T	C	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	118484265	rs10733098	G	A	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	118501390	rs3215666	CT	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.180;QD=2.74;ReadPosRankSum=1.249;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr1	118514723	.	T	TA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=5.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.111;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr1	118526592	rs4347199	G	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	118623681	.	TAC	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.178;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr1	118693217	rs1935992	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	119466275	rs4659129	A	G	599.89	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chr1	119923531	rs2224995	A	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr1	119923724	rs2275607	T	C	3649.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:31,154:0.83:185
chr1	119925403	rs1341007	C	T	789.89	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:3,29:0.91:32
chr1	119925464	rs2298027	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:17,58:0.77:75
chr1	119927680	rs6667679	A	G	4724.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:59,197:0.77:256
chr1	119935507	rs10802092	A	T	294.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	119936231	.	C	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.068;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr1	119936263	rs3765949	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr1	120057158	rs6203	C	T	4645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=5.853;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.652;QD=18.96;ReadPosRankSum=1.357;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:51,194:0.79:245
chr1	120057246	rs1047303	C	A	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:13,60:0.82:73
chr1	120165826	rs12076924	C	T	12310.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr1	120166453	rs76236163	G	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.300;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr1	120166681	rs12067843	G	A	5387.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:73,240:0.77:313
chr1	120263657	rs894079	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.268;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:57,11:0.16:68
chr1	120267505	rs483180	C	G	4228.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:66,182:0.73:248
chr1	120267544	rs1886736	C	T	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:124,59:0.32:183
chr1	120267597	rs3838425	GC	G	2849.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	120269567	rs2236398	G	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.327;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:99,21:0.17:120
chr1	120296033	.	A	AAC	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-0.436;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	120336785	rs1052972	C	T	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.949;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:162,57:0.26:219
chr1	120336876	rs699778	T	G	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:29,92:0.76:121
chr1	120337384	rs947270	T	C	520.22	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr1	120337403	rs947271	A	G	395.84	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr1	120341256	rs71672737	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:16,65:0.80:81
chr1	120378678	rs3009182	C	T	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	120380008	rs3009184	T	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	120381686	rs5777416	G	GT,GTGTGAGTCA	951.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AF:DP	1/1:1.00:19
chr1	120381687	.	G	C	313	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=12;NR=2;PP=313;QD=24.8408008962;SC=TGATTATATGGAGCACCTAGC;SbPval=0.71;Source=Platypus;TC=23;TCF=19;TCR=4;TR=14;WE=120381695;WS=120381682;set=Platypus	GT:AD:AF:DP	1/1:9,14:0.61:23
chr1	120381687	rs34302627	G	GTGAGTCAC	951.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.59;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	120384205	rs2994820	A	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	120387120	rs12405228	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr1	120437718	rs2793823	G	A	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.329;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:441,109:0.20:550
chr1	120437884	rs2641348	A	G	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.667;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:323,95:0.23:418
chr1	120458004	rs6685892	A	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.193;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr1	120459433	rs41277624	G	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	120463044	rs41306195	C	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:15,55:0.79:70
chr1	120471857	rs2493392	C	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.733;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:183,43:0.19:226
chr1	120477998	rs2453056	C	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.807;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr1	120478285	rs5025718	T	C	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,68:0.76:90
chr1	120480394	rs2453057	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	120480709	rs2453058	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.116;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr1	120496119	rs7534585	A	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.790;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:141,30:0.18:171
chr1	120496127	rs7534586	A	C	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.323;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:154,31:0.17:185
chr1	120506108	rs2934381	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=1.401;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr1	120512104	rs2493409	T	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	120529750	rs2453040	A	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.391;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	120539304	rs199668763	T	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.556;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-3.819;QD=1.67;ReadPosRankSum=-0.174;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:247,51:0.17:298
chr1	120539331	rs2124109	C	T	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-4.488;QD=1.55;ReadPosRankSum=1.375;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:275,55:0.17:330
chr1	120611554	rs75248693	TT	CG	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.266;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.97;MQRankSum=-6.133;QD=8.19;ReadPosRankSum=-1.025;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:124,41:0.25:165
chr1	120611715	rs2794167	A	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:59,22:0.27:81
chr1	120611960	rs139076095	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-5.688;QD=2.98;ReadPosRankSum=0.218;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr1	120612002	rs372504208	CGG	C	864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-7.840;QD=8.31;ReadPosRankSum=2.914;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr1	120612034	rs201668322	T	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=54.87;MQRankSum=-7.836;QD=3.06;ReadPosRankSum=-0.127;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr1	120612040	.	T	TCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.351;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=9.915;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-7.452;QD=6.23;ReadPosRankSum=1.504;SOR=1.947;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr1	120612154	rs56375229	C	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=-4.121;QD=5.31;ReadPosRankSum=-0.362;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr1	120612163	rs55899574	C	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=-4.274;QD=5.80;ReadPosRankSum=-0.541;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr1	121115761	rs150166046	T	G	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	121115786	rs199825051	C	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.758;MLEAC=1;MLEAF=0.500;MQ=47.57;MQRankSum=-2.043;QD=3.07;ReadPosRankSum=1.854;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr1	121116678	rs61806689	C	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-5.692;QD=3.22;ReadPosRankSum=1.019;SOR=1.360;set=HC	GT:AD:AF:DP	0/1:94,15:0.14:109
chr1	121116688	rs61806690	A	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-6.538;QD=3.01;ReadPosRankSum=0.420;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr1	121116933	rs79097880	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	121116953	rs78187610	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr1	144013853	rs6600697	T	C	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:158,93:0.37:251
chr1	144013865	rs6600696	T	G	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:170,107:0.39:277
chr1	144014051	rs1884147	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:220,90:0.29:310
chr1	144014068	rs1884146	T	C	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:80,162:0.67:242
chr1	144676632	.	T	C	42	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=4;MGOF=0;MMLQ=21;MQ=48.57;NF=1;NR=2;PP=42;QD=25.5904041824;SC=AAATGTTTGCTGAATAAGTGA;SbPval=0.27;Source=Platypus;TC=12;TCF=8;TCR=4;TR=3;WE=144676654;WS=144676622;set=Platypus	GT:AD:AF:DP	1/0:9,3:0.25:12
chr1	144676646	.	T	C	42	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=4;MGOF=0;MMLQ=28;MQ=46.35;NF=0;NR=2;PP=42;QD=38.3856062736;SC=TAAGTGAATCTATGTCTCTTG;SbPval=0.1;Source=Platypus;TC=13;TCF=9;TCR=4;TR=2;WE=144676654;WS=144676622;set=Platypus	GT:AD:AF:DP	1/0:11,2:0.15:13
chr1	144680070	rs150219082	T	C	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.57;QD=28.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	144854412	rs77812232	A	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr1	144854454	.	A	C	198	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=1;MGOF=43;MMLQ=22;MQ=56.06;NF=14;NR=4;PP=198;QD=12.9317340304;SC=TTCTCATCTGAAGCACAAGTG;SbPval=0.69;Source=Platypus;TC=71;TCF=53;TCR=18;TR=18;WE=144854462;WS=144854444;set=Platypus	GT:AD:AF:DP	0/1:53,18:0.25:71
chr1	144854491	rs2798856	T	G	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=2.639;QD=13.78;ReadPosRankSum=1.302;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:59,40:0.40:99
chr1	144854497	rs2653676	A	G	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=2.481;QD=13.73;ReadPosRankSum=2.006;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:66,41:0.38:107
chr1	144854501	rs142453097	CCT	C	1332.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr1	144854528	rs78461771	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=5.415;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-11.631;QD=2.05;ReadPosRankSum=0.717;SOR=1.481;set=HC	GT:AD:AF:DP	0/1:121,16:0.12:137
chr1	144854537	rs3851872	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.869;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=4.833;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-11.089;QD=1.99;ReadPosRankSum=0.239;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:132,19:0.13:151
chr1	144854581	rs78371650	T	C	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=9.482;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-10.656;QD=4.04;ReadPosRankSum=1.217;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:127,24:0.16:151
chr1	144854594	rs79028512	G	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=7.317;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-9.373;QD=4.78;ReadPosRankSum=0.068;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:115,25:0.18:140
chr1	144854597	rs3851873	T	C	2944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=13.259;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-3.795;QD=22.14;ReadPosRankSum=1.130;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:57,76:0.57:133
chr1	144854597	.	TC	CT	1126	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=27;MQ=57.77;NF=21;NR=24;PP=1126;QD=26.2103972192;SC=TCTGAAGGAGTCGCTCCTGTT;SbPval=0.53;Source=Platypus;TC=129;TCF=59;TCR=70;TR=45;WE=144854606;WS=144854571;set=Platypus	GT:AD:AF:DP	1/0:84,45:0.35:129
chr1	144854598	rs3863691	C	T	1818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.438;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=3.486;QD=13.78;ReadPosRankSum=1.415;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:81,51:0.39:132
chr1	144854675	rs79179886	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=7.426;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.824;QD=4.42;ReadPosRankSum=0.623;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr1	144859720	rs678786	G	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	144859816	.	TGGA	T	1130.73	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,32:0.36:89
chr1	144860026	rs1699819	G	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr1	144865850	rs1613780	G	T	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:121,98:0.45:219
chr1	144866509	rs924667	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:80,56:0.41:136
chr1	144866643	rs1620560	G	A	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:206,198:0.49:404
chr1	144866662	rs1064044	T	C	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:193,190:0.50:383
chr1	144868170	rs1628310	C	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr1	144868204	rs1747951	A	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr1	144871738	rs1698605	C	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr1	144871755	rs1778159	A	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	144871782	rs1778158	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	144871889	rs1698606	A	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr1	144873818	rs1610566	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr1	144873840	rs1627335	A	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr1	144873887	rs1699787	C	T	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:109,80:0.42:189
chr1	144873962	rs11341221	CT	C	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.809;QD=1.39;ReadPosRankSum=0.870;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:282,36:0.11:318
chr1	144874038	rs1419160	T	C	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr1	144874070	rs1610565	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr1	144874088	rs1419158	G	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr1	144874641	rs1610771	G	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr1	144874760	rs1610774	T	C	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:88,61:0.41:149
chr1	144874815	rs1778155	T	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.891;QD=4.03;ReadPosRankSum=0.368;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:89,34:0.28:123
chr1	144874950	rs1747957	G	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=1.131;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	144875916	rs71664004	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr1	144877176	rs2762875	C	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-3.407;QD=10.48;ReadPosRankSum=0.827;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	144877366	rs1807092	A	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr1	144877390	rs1807093	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr1	144879264	rs2798901	A	G	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:29,159:0.85:188
chr1	144879375	rs1747958	T	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:74,71:0.49:145
chr1	144880832	rs12568796	T	C	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr1	144882581	rs1699836	A	G	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:67,73:0.52:140
chr1	144882823	rs1698647	C	T	6132.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:277,286:0.51:563
chr1	144886063	rs1625285	T	C	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr1	144886092	rs1343472	C	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr1	144886197	rs1698624	A	T	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:70,70:0.50:140
chr1	144886409	rs1620507	A	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr1	144890833	rs11447	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	144892089	rs1614098	G	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr1	144892149	rs1698709	G	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,51:0.42:121
chr1	144892368	rs1698708	A	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr1	144895460	rs1698703	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr1	144906508	rs34169189	C	T	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	144910082	rs638780	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	144912153	rs1628172	A	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	144912233	rs1629011	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr1	144915412	rs1698684	T	C	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-1.090;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:77,40:0.34:117
chr1	144915561	rs1778111	G	A	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:64,93:0.59:157
chr1	144915624	rs1778112	G	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr1	144916748	rs1747930	C	G	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:124,124:0.50:248
chr1	144917546	rs1698682	A	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr1	144917841	rs1698681	T	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr1	144918957	rs1061308	T	A	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:135,138:0.51:273
chr1	144919008	rs11296953	AC	A	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.832;QD=1.86;ReadPosRankSum=0.749;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:187,30:0.14:217
chr1	144919094	rs1698680	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr1	144922109	rs1343469	A	G	5661.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:300,261:0.47:561
chr1	144922171	rs1343470	C	T	6126.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:359,302:0.46:661
chr1	144922583	rs1359300	G	A	4967.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:276,244:0.47:520
chr1	144923823	rs11268079	TAGGAAGAAACGGCA	T	8072.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	144930571	rs2762866	C	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr1	144930596	rs2762867	C	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr1	144930940	rs2147326	T	C	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:175,118:0.40:293
chr1	144931087	rs41315684	T	C	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:103,64:0.38:167
chr1	144931330	rs2762745	C	T	4733.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:275,228:0.45:503
chr1	144931392	rs2798893	G	A	3393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.861;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:210,185:0.47:395
chr1	144931461	rs41315685	A	T	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:198,125:0.39:323
chr1	144946510	rs2488977	C	T	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	144946768	rs2762733	G	A	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,62:0.49:127
chr1	144946876	rs2798887	C	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=-0.514;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	144951959	rs142985095	T	C	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=2.794;QD=3.70;ReadPosRankSum=-2.369;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:136,46:0.25:182
chr1	144951973	rs77471170	T	C	3506.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:76,152:0.67:228
chr1	144952078	rs71220421	C	A	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:237,124:0.34:361
chr1	144952220	rs139438772	C	T	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=47.28;MQRankSum=-9.311;QD=6.67;ReadPosRankSum=0.993;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:122,64:0.34:186
chr1	144994658	rs1664022	C	A	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:228,118:0.34:346
chr1	144994861	rs2442640	C	T	5526.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:149,246:0.62:395
chr1	145014053	rs548602	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr1	145014103	rs1778711	G	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr1	145014186	.	GAA	G	2579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.566;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=13.909;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.192;QD=9.52;ReadPosRankSum=-1.197;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:185,86:0.32:271
chr1	145014210	rs1778710	G	A	4577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.496;QD=10.60;ReadPosRankSum=0.466;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:298,134:0.31:432
chr1	145014218	rs1778709	G	A	2007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.704;QD=4.17;ReadPosRankSum=-0.481;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:358,124:0.26:482
chr1	145014263	rs1778708	C	T	4570.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:402,244:0.38:646
chr1	145014394	rs1107089	C	T	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:172,93:0.35:265
chr1	145014411	rs1778707	T	C	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:139,73:0.34:212
chr1	145015877	rs77741369	G	T	1794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.079;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:429,129:0.23:558
chr1	145016020	rs657162	T	G	11134.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr1	145016035	rs80291027	A	C	790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.162;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=6.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.799;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:245,72:0.23:317
chr1	145017784	rs11300211	CT	C	163.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.47;ReadPosRankSum=-0.887;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	145018023	rs2799192	G	T	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.435;QD=5.45;ReadPosRankSum=-1.400;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:68,34:0.33:102
chr1	145018102	.	G	GAGAA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.238;QD=3.31;ReadPosRankSum=-0.120;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr1	145021024	rs1778692	G	C	1546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=1.332;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:105,44:0.30:149
chr1	145021034	rs674066	C	A	1632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.858;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:131,52:0.28:183
chr1	145021265	rs673110	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:170,80:0.32:250
chr1	145038736	rs1663882	C	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:96,67:0.41:163
chr1	145038815	rs2442664	A	G	7959.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	145038952	rs1663881	C	T	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:217,105:0.33:322
chr1	145039562	rs1663878	C	T	4160.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:271,200:0.42:471
chr1	145039633	rs2762750	C	T	3071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.105;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:609,207:0.25:816
chr1	145074939	rs1663854	T	C	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:146,94:0.39:240
chr1	145075208	rs6424335	T	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:74,26:0.26:100
chr1	145075519	rs2596337	G	C	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-1.256;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr1	145075683	rs2762779	C	T	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:121,66:0.35:187
chr1	145075854	rs1663853	G	C	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:209,118:0.36:327
chr1	145075903	rs2596336	C	T	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:200,79:0.28:279
chr1	145075923	rs6656135	C	T	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.188;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:175,61:0.26:236
chr1	145103844	rs2590144	G	A	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:145,68:0.32:213
chr1	145103928	rs2596251	G	A	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.545;QD=3.51;ReadPosRankSum=1.683;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:335,104:0.24:439
chr1	145103947	rs2794062	T	C	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:298,154:0.34:452
chr1	145104052	.	AGT	A	2139.73	.	AC=1;AF=0.500;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:101,61:0.38:162
chr1	145109430	rs2442653	A	T	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=5.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.019;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:175,43:0.20:218
chr1	145109456	rs7553975	C	T	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=2.202;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:259,70:0.21:329
chr1	145109468	rs2442652	A	G	13571.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr1	145109493	rs2442651	C	T	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.003;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:395,101:0.20:496
chr1	145109549	rs2596331	G	T	2532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.808;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:692,192:0.22:884
chr1	145109583	rs2794053	C	A	9650.77	.	AC=1;AF=0.500;AN=2;DB;DP=1011;set=Intersection	GT:AD:AF:DP	0/1:543,460:0.46:1003
chr1	145109661	rs2655551	G	A	3355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=1080;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=2.785;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:832,240:0.22:1072
chr1	145109809	rs2596327	T	A	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:95,49:0.34:144
chr1	145112284	.	CCG	C	1376.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-1.283;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:124,41:0.25:165
chr1	145112287	rs2794042	T	C	632.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.320;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.736;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:128,38:0.23:166
chr1	145112288	.	G	GCA	1403.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-1.392;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:125,43:0.26:168
chr1	145112313	rs2596302	T	C	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.011;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:187,54:0.22:241
chr1	145112414	rs2590131	T	C	6251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911;ClippingRankSum=0.000;DB;DP=970;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=0.258;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:758,206:0.21:964
chr1	145112420	rs2794041	C	T	3701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.069;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:742,249:0.25:991
chr1	145112428	rs2794040	C	T	2750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=1035;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.069;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:810,220:0.21:1030
chr1	145112485	rs2794039	C	T	2651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;ClippingRankSum=0.000;DB;DP=935;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.110;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:732,202:0.22:934
chr1	145115658	.	TATTTTTAA	T	1562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.254;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:264,57:0.18:321
chr1	145115810	rs2655557	A	G	14292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=1178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.169;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:648,518:0.44:1166
chr1	145115820	rs2655558	T	C	2776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=1149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.033;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:901,239:0.21:1140
chr1	145139088	rs150935736	C	CG	1974.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=4.124;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=1.834;QD=7.16;ReadPosRankSum=-0.340;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr1	145210099	rs61814513	A	C	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr1	145248811	rs199902817	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.867;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.967;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	145273520	rs2793994	G	A	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:205,105:0.34:310
chr1	145281247	rs74721027	T	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr1	145281543	rs8002	C	T	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:484,244:0.34:728
chr1	145282093	rs199946317	G	A	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-7.665;QD=4.39;ReadPosRankSum=-0.231;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:164,56:0.25:220
chr1	145456732	rs375314716	GA	G	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.806;QD=1.73;ReadPosRankSum=-0.072;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:190,75:0.28:265
chr1	145507765	rs201779890	G	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-1.145;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr1	145517561	rs4471211	C	T	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	145531980	rs4384171	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	145532010	.	C	CTG	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=1.551;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	145532549	rs1328584	T	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	145532994	rs34834904	GT	G	3452.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	145533001	rs35103913	T	C	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	145533175	rs11590105	T	C	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	145533314	rs2274619	T	C	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	145535921	rs2274617	T	C	9196.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	145538664	rs1109216	A	G	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	145555653	rs6424379	C	T	7198.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	145556986	rs56110740	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	145558565	rs11801520	C	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	145558824	rs17352281	A	C	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	145561116	rs11578772	G	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	145562293	rs11579366	G	C	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	145563011	rs148620847	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr1	145585317	rs4128488	A	G	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	145587539	rs200628374	TC	T	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr1	145588242	.	C	T	107.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	145589433	rs371455010	G	C	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr1	145597116	rs9728311	C	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	145597417	rs9728345	C	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	145598459	rs9729715	T	C	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	145601861	rs9286837	G	A	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	145696694	rs2231375	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	145706564	.	C	CA	77.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.08;ReadPosRankSum=-1.602;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	145826770	rs34955113	G	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	145826975	rs371460462	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:84,30:0.26:114
chr1	146633933	rs1036852	G	A	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	146643555	rs1348316	A	G	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	146656292	rs4950385	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	146672906	rs894469	C	T	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	146673178	rs6683215	A	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	146680262	rs2354433	A	G	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	146685121	rs1530336	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	146687250	rs1822312	A	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	146714392	rs1890042	G	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	146723922	rs150472907	G	A	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:14,77:0.85:91
chr1	146724093	rs1890037	A	G	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	146727388	rs17160051	G	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	146728162	rs61409326	T	TA	2861.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	146736092	rs4950315	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	146740502	rs17356233	C	G	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	146740576	rs11576360	G	A	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	146747153	rs6680778	T	C	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	146747213	rs34022752	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr1	146748072	rs7534963	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	146751782	rs7547279	A	C	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	146759306	rs6703892	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	146766069	rs71083827	C	CAT	4064.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	146767149	rs4950394	G	T	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	147087721	rs3737843	T	A	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	147091972	rs3820129	C	T	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	147096794	rs867270	A	G	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	147096828	rs946902	C	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	147119273	rs1344	G	A	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr1	147121977	rs6593795	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	147124310	rs2153463	T	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	147131465	rs6674938	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	147131501	rs34675044	A	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	147131945	rs2275552	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	147230217	rs1692141	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	147380467	rs142415337	G	A	5074.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:49,206:0.81:255
chr1	147381397	rs34123490	G	GA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.744;QD=3.14;ReadPosRankSum=-0.277;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr1	147381444	rs1532399	A	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr1	147806559	rs10752439	C	T	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	147806874	rs2999607	G	C	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	147806880	rs537191	T	C	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	149290740	.	T	C	1122.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr1	149291033	.	G	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=4.960;MLEAC=1;MLEAF=0.500;MQ=39.34;MQRankSum=-1.645;QD=1.67;ReadPosRankSum=0.375;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr1	149379605	.	C	G	110.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.02;QD=22.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	149676264	rs199745503	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=55.65;MQRankSum=-8.026;QD=0.61;ReadPosRankSum=-0.899;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:143,26:0.15:169
chr1	149676401	rs146138154	A	G	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:140,60:0.30:200
chr1	149676508	rs142083788	A	T	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.45;MQRankSum=-1.015;QD=13.56;ReadPosRankSum=-0.680;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:33,43:0.57:76
chr1	149676532	rs138339323	A	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.366;MLEAC=1;MLEAF=0.500;MQ=43.29;MQRankSum=-1.213;QD=14.60;ReadPosRankSum=0.838;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr1	149676574	rs149550720	G	C	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=22.15;ReadPosRankSum=0.292;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	149858515	.	G	A	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-3.696;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:228,58:0.20:286
chr1	149880650	rs35002905	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr1	149900985	rs71664710	CA	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.817;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:81,24:0.23:105
chr1	149905279	rs72692821	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:73,27:0.27:100
chr1	149908108	rs1868992	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.052;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr1	149931541	rs4926400	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-1.272;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr1	150122493	rs4553237	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	150128425	rs1545762	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	150129267	rs10749675	G	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	150199039	rs68136184	CTCCTCT	C	1217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.989;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=5.242;QD=5.05;ReadPosRankSum=1.997;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:197,44:0.18:241
chr1	150199123	rs7522034	G	T	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=5.226;QD=1.85;ReadPosRankSum=-0.262;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:173,39:0.18:212
chr1	150203082	rs201009025	C	CT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=2.060;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	150203984	rs113913866	AT	A	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.524;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr1	150234657	rs34714364	G	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:28,77:0.73:105
chr1	150249101	rs11205354	C	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.782;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr1	150255587	rs2147324	T	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.354;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr1	150258838	rs1122967	C	G	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-1.573;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:121,45:0.27:166
chr1	150259400	rs9126	A	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.397;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.395;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:115,35:0.23:150
chr1	150276429	rs471738	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.355;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr1	150276461	rs471657	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.645;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	150280801	rs8006	G	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	150281202	rs580060	A	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.936;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr1	150300727	rs834225	T	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.360;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr1	150307270	rs1260408	T	G	538.31	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:2,20:0.91:22
chr1	150321486	rs1625468	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=0.517;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	150389964	.	GA	G	490.73	.	AC=1;AF=0.500;AN=2;DP=41;MQ=60.26;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr1	150432802	rs12029359	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr1	150432870	.	GGTT	G	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.49;ReadPosRankSum=0.162;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	150445819	rs7002	A	G	516.22	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr1	150464268	.	A	AT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.635;QD=1.93;ReadPosRankSum=1.341;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	150470322	rs11590324	C	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr1	150471848	rs34802685	A	AT	124.70	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr1	150477061	rs3738487	C	T	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:33,124:0.79:157
chr1	150482738	rs11205387	G	A	5608.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:46,233:0.84:279
chr1	150483236	rs9661040	A	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr1	150483355	rs3737240	C	T	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:31,95:0.75:126
chr1	150483840	rs4970979	C	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr1	150484395	rs149815479	ACC	A	753.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	150484987	rs13294	G	A	6758.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:68,286:0.81:354
chr1	150485566	rs12031973	T	G	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.01;ReadPosRankSum=-2.103;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:11,57:0.84:68
chr1	150485571	rs12031974	T	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.89;SOR=1.640;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	150522471	rs10668635	C	CTG	3327.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:15,82:0.85:97
chr1	150529322	rs34379037	T	TAA	3427.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	150531008	rs10888382	T	C	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	150531050	rs10749657	G	A	7194.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	150531170	rs10749658	C	T	7440.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	150531380	rs11204664	T	C	560.22	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr1	150550019	rs11428742	T	TA	3604.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	150552042	rs16837903	G	A	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.221;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:108,31:0.22:139
chr1	150600181	rs2280078	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr1	150634472	rs3754207	A	G	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr1	150666797	rs7412396	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	150678910	rs1336899	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	150679033	rs1336900	G	A	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.536;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:116,41:0.26:157
chr1	150679358	rs11586422	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:44,11:0.20:55
chr1	150705755	rs1415148	G	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	150727539	rs2230061	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.765;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:141,35:0.20:176
chr1	150730279	rs2275235	A	G	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.160;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr1	150771703	rs10788796	T	C	6724.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	150779755	rs6587522	C	T	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	150789961	rs3894771	A	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	150790289	rs35672926	C	CA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.473;QD=1.22;ReadPosRankSum=-0.773;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	150799112	rs3768017	A	C	373.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=1.861;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr1	150801466	rs3738483	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr1	150804401	rs200891935	G	GA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.945;QD=2.04;ReadPosRankSum=-1.671;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr1	150804429	rs10305704	A	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.089;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.037;QD=3.05;ReadPosRankSum=-0.982;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	150808889	rs2228099	C	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.261;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:113,22:0.16:135
chr1	150825511	rs10305673	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.972;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.891;QD=3.10;ReadPosRankSum=-0.140;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	150833805	rs139885151	C	CA	389.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr1	150849071	.	A	AC	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.346;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	150923774	rs2124952	T	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-2.161;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr1	150935872	rs2280627	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	150938616	rs267739	G	A	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	150939744	rs11204750	C	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=5.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-1.751;SOR=1.344;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr1	150940357	rs6656535	GC	TT	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.177;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.094;SOR=1.628;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chr1	150941381	rs752376	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	150944169	rs11579289	G	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	150944541	rs267737	A	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	150956947	rs2305815	C	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr1	150958977	rs2305814	T	C	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	150960350	rs7532008	A	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr1	150969992	rs2925740	T	C	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	150970577	rs2925741	G	T	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	150970811	rs74602660	G	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr1	150972538	rs708909	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	150972559	rs201856676	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.349;QD=9.79;ReadPosRankSum=-0.980;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	150974162	rs771204	G	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.586;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:62,14:0.18:76
chr1	150975108	rs771205	T	C	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	150997940	rs3738478	T	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-1.036;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr1	150998221	rs55774303	AT	A	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.443;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr1	150999863	rs55717234	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr1	151001583	rs6691701	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.487;QD=3.02;ReadPosRankSum=-0.324;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	151006539	rs3738476	C	A	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.756;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:155,51:0.25:206
chr1	151017254	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-1.107;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr1	151028234	rs11204767	G	T	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	151134565	rs139856560	A	T	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr1	151134579	rs11459817	T	TA	67.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	151139073	.	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.141;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	151144891	rs28730724	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.128;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr1	151146186	rs7552226	C	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	151146276	rs7521416	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	151149601	rs6656261	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	151162471	rs201073461	C	G	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.395;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:354,81:0.19:435
chr1	151205303	rs7544947	A	G	544.94	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr1	151209063	rs12407426	C	T	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:69,218:0.76:287
chr1	151209297	.	C	CTT	62.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.21;ReadPosRankSum=-0.566;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	151210789	rs7532935	C	T	3901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.517;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:57,176:0.76:233
chr1	151212399	rs141190258	C	CCTT	2242.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	151220344	rs201773151	G	A	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=1.277;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:21,57:0.73:78
chr1	151227371	rs3811405	A	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=6.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.38;ReadPosRankSum=1.411;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr1	151237589	rs3216063	TC	T	1067.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:6,43:0.88:49
chr1	151238222	rs2275900	G	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr1	151239051	rs7489	T	C	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:50,164:0.77:214
chr1	151239570	rs10888408	C	T	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:19,78:0.80:97
chr1	151254041	rs3811406	T	C	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=7.788;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.552;QD=17.35;ReadPosRankSum=2.714;SOR=0.234;set=HC	GT:AD:AF:DP	0/1:26,92:0.78:118
chr1	151263782	rs10788803	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	151280400	rs1536617	C	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	151288172	rs1056847	G	A	1223.53	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:6,52:0.90:58
chr1	151288391	rs1752379	A	G	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	151314379	rs1752387	T	C	173.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	151315287	rs2233854	G	C	4369.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:39,191:0.83:230
chr1	151316161	rs1752386	G	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	151337788	rs10788804	A	G	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr1	151341703	rs55906289	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr1	151341728	rs35093538	G	GC	387.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	151372770	rs2495390	A	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	151373200	rs2495391	T	C	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	151374025	rs4603	T	C	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	151377248	rs6667714	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	151380505	.	AAAG	A	546.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=4.337;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.78;ReadPosRankSum=0.640;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	151380727	rs2025899	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr1	151384052	.	T	TA	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.665;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=5.466;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.623;QD=2.23;ReadPosRankSum=-0.341;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr1	151495796	rs2337359	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr1	151497140	rs1573130	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	151497202	rs12038198	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=0.241;SOR=1.233;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr1	151497376	rs1573129	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	151499635	rs2298168	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	151501698	rs2096232	A	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	151501737	rs6678068	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	151501841	rs12044926	C	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.298;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr1	151508061	rs11204842	A	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	151518484	rs71580387	T	TTC	550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.27;MQRankSum=2.293;QD=19.67;ReadPosRankSum=-0.637;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr1	151535020	rs143684177	A	ATC	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	151538507	rs11405272	T	TC	116.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=23.37;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	151538784	rs140188723	T	TTC	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	151542099	rs3748610	G	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr1	151546931	rs6660238	A	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr1	151551320	rs3748608	G	A	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=-0.118;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr1	151552301	rs3833527	TG	T	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	151553918	rs10494267	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	151554503	rs1891592	T	C	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,58:0.73:79
chr1	151634512	rs3831367	A	AT	1228.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	151634803	rs11808761	G	A	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	151675618	rs1308150	T	C	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	151700189	rs72506285	C	CCTG	2686.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	151732504	rs148153971	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr1	151740479	rs1196457	C	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	151740666	rs2495397	T	C	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	151742550	.	GGAGAGA	G	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.613;QD=7.92;ReadPosRankSum=1.292;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr1	151742565	rs140076465	GGGAGACCATGGGGAGACGGAGAC	G	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.747;QD=6.25;ReadPosRankSum=1.008;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr1	151742798	rs3748612	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	151747043	rs1123855	C	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:108,60:0.36:168
chr1	151747733	rs1781421	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.240;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr1	151747799	rs1781419	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr1	151748425	rs3923394	C	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.676;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr1	151751081	rs1996729	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.442;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr1	151752383	rs12754510	G	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr1	151753805	rs11355113	AT	A	873.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.72;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	151753807	rs36118417	AT	A	42.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.05;ReadPosRankSum=-2.120;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	151754112	rs35077383	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,26:0.26:99
chr1	151783688	rs939595	A	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	151789588	rs151171878	C	CTGTGTG,CTGTGTGTG	975.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/2:0.43,0.57:21
chr1	151789609	rs56273334	C	T	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	151789609	.	CGC	TGT	1063	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=2;HapScore=1;MGOF=23;MMLQ=24;MQ=59.72;NF=17;NR=6;PP=1063;QD=48.5420815157;SC=TGTGTGTGTGCGCGCGCGCGC;SbPval=0.62;Source=Platypus;TC=29;TCF=21;TCR=8;TR=23;WE=151789619;WS=151789597;set=Platypus	GT:AD:AF:DP	1/1:6,23:0.79:29
chr1	151789611	rs55841824	C	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	151798295	rs12030974	G	A	5599.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:73,254:0.78:327
chr1	151803705	rs114103746	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.647;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.439;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr1	151811226	rs6673556	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	151819691	.	AGGAGGCAGGAGGCAGGCAGGGGAGGCAGGAGGCAGGAGGCAGGCAGG	A	1137.73	.	AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	151820197	.	G	T	1887.77	.	AC=1;AF=0.500;AN=2;DP=113;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:31,82:0.73:113
chr1	151820298	rs6587624	G	C	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	151820324	rs6587625	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	151825991	rs7556386	G	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	151862661	rs1060870	G	A	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:22,72:0.77:94
chr1	151867560	rs3762427	G	A	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	151881885	rs3748805	A	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	152009530	rs3811422	T	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	152083325	rs11803731	A	T	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=1.020;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:291,86:0.23:377
chr1	152084693	.	TCTC	T	7170.73	.	AC=1;AF=0.500;AN=2;DP=236;set=Intersection	GT:AD:AF:DP	0/1:47,180:0.79:227
chr1	152085505	rs2515663	A	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	152185762	rs41266112	C	G	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.56;QD=42.72;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	152185768	rs41266114	T	G	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.33;QD=47.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	152185774	rs61814932	A	G	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.05;QD=46.12;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	152185780	rs41266116	G	A	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.81;QD=46.63;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	152185790	rs76102381	T	C	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.16;QD=49.23;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	152185792	rs74493243	G	A	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.66;QD=52.33;SOR=1.704;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	152185796	rs41266118	A	G	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.37;QD=47.17;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	152185812	.	C	CAG	1762.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.00;QD=45.20;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	152185817	.	CCA	C	1222.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.17;QD=50.95;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	152185823	rs41266120	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.74;QD=60.11;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	152191709	rs6662450	C	G	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr1	152191879	rs10788828	G	A	9665.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr1	152192114	rs7520249	C	T	6871.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	152192293	rs7520375	C	T	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	152192631	rs6587647	C	T	12378.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr1	152192687	rs6587648	T	C	10864.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr1	152192978	rs6587649	T	C	11006.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	152193052	rs6587650	A	G	10252.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	152193121	rs6587651	G	T	7807.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	152193291	rs6587652	G	T	11543.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:1,402:1.00:403
chr1	152193544	rs7535536	A	G	13224.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	152193547	rs6587653	G	A	13088.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	152193851	rs11204937	C	T	6137.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	152193990	rs11204938	A	G	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	152195728	rs34061715	AT	A	2215.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:5,114:0.96:119
chr1	152281137	rs149955442	G	A	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=4.733;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.496;QD=3.13;ReadPosRankSum=0.450;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:239,68:0.22:307
chr1	152281621	rs34806697	T	C	8550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.867;QD=18.47;ReadPosRankSum=-0.488;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:93,370:0.80:463
chr1	152283747	rs201398557	A	C	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:44,147:0.77:191
chr1	152286126	rs11582620	A	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=1.357;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:344,72:0.17:416
chr1	152329369	rs2282302	C	G	9249.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:103,373:0.78:476
chr1	152330166	rs142211912	C	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=1.223;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr1	152384498	rs3215709	G	GT	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	152384833	rs1923492	T	C	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	152484129	rs2105117	G	A	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.579;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:571,132:0.19:703
chr1	152487979	rs2282296	C	T	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-0.034;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr1	152488063	rs1053588	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr1	152552285	rs512208	C	A	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:32,201:0.86:233
chr1	152552461	rs4845313	C	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.658;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-1.270;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:104,19:0.15:123
chr1	152636843	rs9793541	A	T	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:22,120:0.85:142
chr1	152681543	rs1332496	T	C	14198.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.062;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr1	152681680	rs6143428	C	CAGCTCTGGGGGCTGCTGT	12119.73	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr1	152691943	rs1332499	G	A	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr1	152692074	rs1332500	G	C	4871.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:64,205:0.76:269
chr1	152692472	rs873775	A	C	7517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.090;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=-1.421;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:100,313:0.76:413
chr1	152692588	rs944682	A	G	6442.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:75,280:0.79:355
chr1	152692781	rs3814350	G	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr1	152692862	rs3814351	G	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	152732106	rs17612167	A	T	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.155;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:195,63:0.24:258
chr1	152732436	rs4845480	G	C	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:41,149:0.78:190
chr1	152733301	rs4329520	T	A	14579.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:190,623:0.77:813
chr1	152759950	rs11205106	A	G	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:39,153:0.80:192
chr1	152760106	rs56313719	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-1.307;QD=1.04;ReadPosRankSum=-0.740;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr1	152777868	rs36107483	A	G	3520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-2.924;QD=17.78;ReadPosRankSum=-1.621;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:46,152:0.77:198
chr1	152777964	rs17624493	G	A	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:48,124:0.72:172
chr1	152882982	.	C	CAGCAGCAGGAGGGGCAGCTGGAGCTCTCTG	1050.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.260;MLEAC=2;MLEAF=1.000;MQ=58.11;MQRankSum=0.000;QD=65.67;ReadPosRankSum=-0.217;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr1	152944594	rs3170863	C	T	8618.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	152957573	rs1611760	T	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	152957832	rs1611762	C	A	6852.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	152957887	rs1611764	G	A	7540.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	152975495	rs2075739	G	A	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	152975658	rs67156933	AGAGCCAGGCTGTACCAAGGTCCCT	A	2054.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.95;QD=38.05;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	152975763	rs1977734	C	A	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	152975829	rs1970328	A	G	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	152975941	rs1055935	C	G	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	153004721	rs1334848	A	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	153004778	rs3820141	C	T	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	153004809	rs3181787	T	C	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,228:0.99:230
chr1	153004848	rs3795381	T	C	13220.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=45.43;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	153004853	rs3795382	C	T	13384.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.03;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	153004983	rs12195	C	T	7781.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	153005156	rs2711	C	T	8890.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	153122310	rs510277	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	153233510	rs6661601	A	G	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:41,134:0.77:175
chr1	153233991	rs11275959	A	ACTCTGGCGGCGG	1126.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr1	153234503	rs139020547	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:60,24:0.29:84
chr1	153270362	rs2771110	C	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	153271524	rs821431	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr1	153277423	rs843971	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.159;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:80,29:0.27:109
chr1	153277660	rs2771112	A	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.729;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr1	153279462	rs66966700	TAAG	T	3381.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	153282892	rs821424	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	153283004	rs821423	C	T	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	153283179	rs3006473	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:12,52:0.81:64
chr1	153314153	rs3006448	C	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	153314347	rs3006449	C	T	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	153315467	rs5777858	T	TAAG	1427.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	153315579	rs3014863	A	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr1	153315784	rs1865234	T	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	153317705	rs199748946	C	A	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:25,122:0.83:147
chr1	153320334	rs3006457	T	C	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	153320372	rs3006458	T	G	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	153320581	rs3006459	T	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	153346263	rs4772	A	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr1	153362507	rs3006488	A	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr1	153362799	rs80122691	A	T	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr1	153363105	rs3795391	T	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr1	153391729	rs3006414	G	A	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:31,130:0.81:161
chr1	153391786	rs3014813	T	C	3511.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:37,153:0.81:190
chr1	153410822	rs10888561	C	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.471;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr1	153412392	rs3006428	T	G	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	153431406	rs3014837	C	G	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	153431561	rs12132927	T	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.868;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:136,34:0.20:170
chr1	153509892	rs2248745	A	G	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:26,70:0.73:96
chr1	153517092	rs138957616	GC	G	4908.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:57,166:0.74:223
chr1	153517172	rs1050923	T	C	8022.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:112,346:0.76:458
chr1	153520138	rs41265162	C	T	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:14,52:0.79:66
chr1	153520203	rs41265164	G	A	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:29,112:0.79:141
chr1	153520400	rs56089062	T	C	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:4,32:0.89:36
chr1	153520714	rs34557489	T	TC	1170.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr1	153520784	rs28718953	C	A	3475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.060;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.616;QD=29.46;ReadPosRankSum=-0.327;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:31,87:0.74:118
chr1	153520790	rs28594230	G	C	3593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.641;QD=28.75;ReadPosRankSum=0.080;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:35,90:0.72:125
chr1	153520804	rs28452456	A	G	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:37,114:0.75:151
chr1	153520954	rs36022742	C	T	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:31,147:0.83:178
chr1	153521018	rs28548347	A	C	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:19,72:0.79:91
chr1	153533898	rs8401	A	G	1151.89	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:5,47:0.90:52
chr1	153534027	rs1047325	C	T	1503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=-1.223;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:26,68:0.72:94
chr1	153535848	.	C	CA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.396;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr1	153587256	rs11548102	A	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	153587308	rs11548104	C	T	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	153588208	rs9792963	G	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	153588279	rs9792967	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	153598904	rs113541380	G	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.610;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:154,51:0.25:205
chr1	153600778	rs3806233	G	A	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	153604029	rs1046379	C	T	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	153604112	rs1046381	G	A	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	153609039	rs4845557	T	C	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	153631943	rs8532	G	A	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:24,130:0.84:154
chr1	153632139	rs6692298	G	C	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:26,84:0.76:110
chr1	153635425	rs3795396	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	153636432	rs10598064	TTAC	T	363.74	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr1	153636468	rs369602600	CTA	C	55.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.396;QD=1.19;ReadPosRankSum=0.684;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr1	153636471	rs372540759	CT	C	55.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.396;QD=1.19;ReadPosRankSum=0.666;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr1	153636860	rs4351684	A	G	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	153640827	rs7536700	C	T	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:21,72:0.77:93
chr1	153642835	rs6663046	G	C	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	153658139	rs5777877	C	CA	570.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr1	153658187	rs3891075	A	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:20,82:0.80:102
chr1	153658480	rs11264236	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr1	153658767	rs60349054	A	AG	1056.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr1	153659860	rs28730729	C	G	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr1	153661845	rs28730731	C	T	4281.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:78,182:0.70:260
chr1	153662340	rs35240348	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr1	153662584	.	GTCTCTCTC	G	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=53.62;MQRankSum=2.189;QD=7.72;ReadPosRankSum=1.368;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	153665919	rs5777879	T	TC	853.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr1	153701376	rs12074957	G	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.26;QD=23.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	153742535	rs144771560	GTGT	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.43;QD=27.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	153743234	rs6675978	T	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	153743289	rs12068256	C	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	153744244	rs116359049	A	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=1.771;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr1	153745380	rs41313882	G	A	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:11,63:0.85:74
chr1	153750207	rs139720425	C	CCTT	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.076;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:176,28:0.14:204
chr1	153750214	rs374974027	TC	T	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.459;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:195,30:0.13:225
chr1	153784666	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=2.542;QD=1.26;ReadPosRankSum=-0.305;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr1	153790501	rs4363451	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=2.060;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr1	153904574	rs11264620	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.375;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr1	153906397	rs11264621	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	153907278	rs3835302	CCTGCTGCTG	C	534.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=10.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.638;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:166,26:0.14:192
chr1	153913684	rs2297895	C	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:20,68:0.77:88
chr1	153913699	rs1110165	T	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.878;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr1	153913770	rs2252508	A	G	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	153920564	rs10559	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=10.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.446;SOR=2.935;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr1	153921483	rs111395902	AC	A	775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.933;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.468;QD=7.68;ReadPosRankSum=0.109;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:67,34:0.34:101
chr1	153941514	rs11264743	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.985;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:94,31:0.25:125
chr1	153945995	rs141036019	G	A	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.086;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:119,35:0.23:154
chr1	153954674	rs10908578	T	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	153954778	rs71584158	AACAC	A	712.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;QD=37.51;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	153955601	.	C	CA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=1.985;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:113,24:0.18:137
chr1	153964396	rs34521811	C	CAA	7463.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	153994647	rs11264875	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=1.243;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:55,11:0.17:66
chr1	154026642	rs34752019	A	G	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:18,67:0.79:85
chr1	154027381	rs3834774	AT	A	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.139;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr1	154029450	rs11264964	G	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-0.515;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr1	154061855	rs2066135	T	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	154076366	rs7521047	T	C	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	154091017	rs6661101	G	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.163;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	154108387	rs3001361	G	A	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	154112167	rs2500223	A	C	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=1.352;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr1	154141908	rs4845364	A	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.825;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:79,26:0.25:105
chr1	154186918	rs12408458	G	C	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.815;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr1	154192143	rs9803862	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr1	154208877	rs3762339	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	154218550	rs11301778	CT	C	32.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	154218639	rs4040743	TTCAG	T	403.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	154227239	rs1194604	C	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=2.353;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr1	154227292	rs11412846	G	GT	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.639;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:106,60:0.36:166
chr1	154228287	rs1194603	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=2.058;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:142,30:0.17:172
chr1	154243097	rs2282227	G	A	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:26,66:0.72:92
chr1	154243115	rs1044013	C	T	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr1	154245142	rs11265425	T	G	759.79	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,32:0.86:37
chr1	154285052	rs11265530	G	A	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.980;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-2.718;QD=17.32;ReadPosRankSum=-0.208;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:11,41:0.79:52
chr1	154285078	rs11581043	T	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-2.011;QD=15.93;ReadPosRankSum=-0.378;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr1	154293675	rs6668968	G	A	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:14,78:0.85:92
chr1	154294656	rs1194607	T	C	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr1	154295592	rs6685323	C	T	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.14;ReadPosRankSum=0.457;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:22,95:0.81:117
chr1	154303705	rs12727865	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,46:0.81:57
chr1	154303976	rs6702754	T	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:12,55:0.82:67
chr1	154305010	rs1209264	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	154305190	rs12077870	G	C	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:32,101:0.76:133
chr1	154310048	rs1760795	C	G	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=0.755;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:127,48:0.27:175
chr1	154310223	rs11448687	G	GA	1102.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr1	154317153	rs1194587	C	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.834;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:100,21:0.17:121
chr1	154317281	rs9660850	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr1	154317418	rs1194586	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	154318172	rs1979575	A	G	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:31,98:0.76:129
chr1	154321072	rs1194591	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	154401972	rs6694817	T	C	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:26,83:0.76:109
chr1	154407419	rs7518199	A	C	550.89	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr1	154407713	rs7521458	T	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:11,65:0.86:76
chr1	154408340	rs4845371	T	C	241.89	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr1	154409893	rs71586015	A	AT	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.018;QD=9.85;ReadPosRankSum=0.488;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,29:0.71:41
chr1	154420402	rs7512646	G	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	154426970	rs2228145	A	C	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.44;ReadPosRankSum=2.208;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:19,54:0.74:73
chr1	154437896	rs2229238	T	C	3541.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:46,137:0.75:183
chr1	154442960	rs11265621	G	A	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:20,69:0.78:89
chr1	154456772	rs61812630	G	T	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:25,109:0.81:134
chr1	154459197	rs4845633	C	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	154474131	rs4845635	C	G	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	154474557	rs6703672	T	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.49;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	154479657	rs10654618	C	CAT	2286.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	154479670	rs6664608	C	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:12,50:0.81:62
chr1	154492702	rs10908842	G	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr1	154493721	rs6684225	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	154514331	rs4845647	C	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	154515193	rs58881140	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.057;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr1	154516477	rs12750774	G	A	4987.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:61,212:0.78:273
chr1	154516571	rs6678164	T	C	7966.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.88;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	154516571	.	TATGCACG	CATGCACA,CATGCACG	2594	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=6;MMLQ=28;MQ=60.0;NF=19,99;NR=27,132;PP=379,2594;QD=9.40147554048;SC=TTTTCTGGGCTATGCACGTCA;SbPval=0.62;Source=Platypus;TC=231;TCF=99;TCR=132;TR=46,231;WE=154516586;WS=154516561;set=Platypus	GT:AF:DP	0/1:0.20:231
chr1	154516578	rs3811448	G	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.037;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:194,50:0.20:244
chr1	154517217	rs6681207	T	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:74,30:0.29:104
chr1	154517504	rs3811449	G	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.221;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:116,37:0.24:153
chr1	154519800	rs113168174	C	CA	291.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr1	154523215	rs4520411	C	T	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	154523588	rs10908849	T	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	154524973	rs12144146	A	G	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:18,70:0.80:88
chr1	154528086	rs4078519	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	154557685	rs9427094	C	T	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	154561261	rs9427095	G	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	154562625	rs7532276	G	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.78;ReadPosRankSum=-0.303;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	154571174	rs143817514	T	TGGA	661.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	154573967	rs2229857	T	C	9358.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr1	154574820	rs1466731	T	C	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	154575040	rs1802645	C	T	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	154600372	rs6426859	A	G	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	154709682	.	TGG	T	62.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.68;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	154744807	rs1051614	C	G	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.673;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:179,49:0.21:228
chr1	154744852	rs1131820	A	G	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-2.280;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:110,31:0.22:141
chr1	154832290	rs1061122	C	T	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	154832322	rs1218586	A	C	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	154842199	.	G	GGCTGCTGCTGCTGCT,GGCTGCTGCTGCT	3720.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=142;set=Intersection	GT:AF:DP	1/1:1.00:90
chr1	154917701	rs906594	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:52,19:0.27:71
chr1	154983539	rs6686021	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	154988957	rs2242195	A	G	10048.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	154995920	rs72702247	G	A	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.655;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:136,48:0.26:184
chr1	155003954	rs11582128	G	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	155015927	rs370616763	T	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.342;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:56,20:0.26:76
chr1	155020444	rs138297254	GCA	G	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=5.895;QD=0.55;ReadPosRankSum=-0.846;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:509,66:0.11:575
chr1	155026114	rs6660884	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	155026871	rs11548311	G	T	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:40,146:0.78:186
chr1	155026942	rs6427128	A	C	6393.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr1	155028522	rs11264302	G	A	13752.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:1,516:1.00:517
chr1	155030557	rs11264303	A	C	11966.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr1	155031031	rs111829929	C	T	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:21,96:0.82:117
chr1	155033317	rs11264304	T	C	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	155057499	rs3766918	A	G	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:20,69:0.78:89
chr1	155106054	rs4390169	A	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.381;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=5.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.923;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:117,41:0.26:158
chr1	155106227	rs4745	A	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=4.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.756;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:166,49:0.23:215
chr1	155106550	rs9297	A	G	4330.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:37,182:0.83:219
chr1	155108287	rs11264333	G	A	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr1	155142210	rs4421576	A	G	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:17,80:0.82:97
chr1	155142229	rs4276914	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:19,88:0.82:107
chr1	155160941	rs11465205	C	T	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=7.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.310;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:93,29:0.24:122
chr1	155162067	rs4072037	C	T	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:17,66:0.80:83
chr1	155167786	rs41264915	A	G	4374.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:45,192:0.81:237
chr1	155172725	rs35154152	T	C	5962.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:66,259:0.80:325
chr1	155173527	rs67579710	G	A	138.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	155178782	rs760077	A	T	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:25,55:0.69:80
chr1	155181843	rs2974935	G	T	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr1	155181989	rs61738875	G	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:16,91:0.85:107
chr1	155182164	rs2075570	C	T	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:31,140:0.82:171
chr1	155184975	rs140081212	A	G	4592.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:66,195:0.75:261
chr1	155186729	rs28445596	T	C	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,75:0.74:101
chr1	155202689	rs10796940	A	C	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,52:0.74:70
chr1	155203060	rs56310840	G	A	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:14,88:0.86:102
chr1	155205669	rs28559737	G	T	5324.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	155206341	rs9628662	T	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:22,72:0.77:94
chr1	155208183	rs114099990	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.19;MQRankSum=-4.025;QD=19.76;ReadPosRankSum=-0.168;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	155209360	rs2075569	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr1	155294274	rs914616	A	G	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr1	155294772	rs4971075	A	G	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	155313047	rs4971051	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	155330237	.	A	AT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.346;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	155408635	rs4971053	T	C	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	155532316	rs12403379	T	C	13095.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=45.63;SOR=1.404;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	155532325	rs12403380	T	C	14789.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=47.10;SOR=1.463;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	155532332	rs34869594	T	C	15225.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=45.59;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr1	155532341	rs61812107	T	C	15760.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=43.42;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	155618415	rs5777949	CT	C	5750.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	155629483	rs7539	C	G	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:31,98:0.76:129
chr1	155631307	.	AACACAC	A,AAC	302	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=4;MMLQ=21;MQ=52.52;NF=0,0;NR=11,11;PP=156,302;QD=14.4545454545;SC=GATCAAGAGAAACACACACAC;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=11,11;WE=155631320;WS=155631297;set=Platypus	GT:AF:DP	0/1:0.79:14
chr1	155679543	.	C	CT	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.164;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:64,24:0.27:88
chr1	155691191	.	GTA	G	70	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=19;MQ=60.0;NF=3;NR=0;PP=70;QD=26.0;SC=ATGTATGTATGTATATATATA;SbPval=1.0;Source=Platypus;TC=13;TCF=10;TCR=3;TR=3;WE=155691200;WS=155691181;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr1	155737385	rs849712	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.37;QD=28.92;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	155737425	.	AACAC	A	1038	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=2;HapScore=1;MGOF=27;MMLQ=28;MQ=46.12;NF=0;NR=20;PP=1038;QD=52.05;SC=GATCAAGAGAAACACACACAC;SbPval=1.0;Source=Platypus;TC=21;TCF=0;TCR=21;TR=20;WE=155737436;WS=155737415;set=Platypus	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	155746340	rs60525991	CT	C	162.75	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr1	155755097	rs822021	G	A	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	155785578	rs148569012	CAACT	C	5641.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	155785776	.	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.448;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr1	155822971	rs822490	C	T	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	155823002	rs822491	T	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	155829360	rs1749412	C	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	155837865	rs822522	G	C	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	155838267	rs822521	T	C	6664.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	155850558	rs822508	T	C	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	155850811	rs822509	G	A	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	155870416	rs1749409	G	A	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	155880573	rs493446	C	G	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	155880760	rs5777961	C	CA	1012.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	155891045	rs625658	A	C	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	155891877	rs4020747	C	CAG	1389.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	155899020	rs539602	A	T	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr1	155903310	rs4661150	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	155903408	rs4661151	C	T	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	155904177	rs2275079	T	C	21824.77	.	AC=2;AF=1.00;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	1/1:0,798:1.00:798
chr1	155904392	rs2275081	G	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	155912486	rs2152051	T	C	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	155917880	rs1010033	T	A	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	155928232	rs2364404	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	155928242	rs2886069	C	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	155931368	rs4661175	G	A	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	155934683	.	C	CA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.173;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	155955076	rs4661216	A	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	155981489	rs1475766	C	G	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	156011444	rs2297792	T	C	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	156038058	rs61748951	C	A	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-2.217;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:204,60:0.23:264
chr1	156109379	rs368278858	GGA	G	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr1	156133038	rs7555253	T	C	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	156146218	rs12401573	C	T	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	156213921	rs7513351	C	T	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-1.452;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:248,71:0.22:319
chr1	156215899	rs2075165	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:96,48:0.33:144
chr1	156220056	rs1043165	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.064;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr1	156230141	rs2287025	T	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	156230206	rs2287024	C	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.077;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr1	156231266	rs759328	G	C	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.004;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:91,30:0.25:121
chr1	156233479	rs4661036	T	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.908;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr1	156255833	rs2842883	G	C	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	156261491	rs3795728	G	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-1.120;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr1	156279210	rs3001784	T	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	156304782	rs3762281	A	G	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	156347131	rs2245623	G	A	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-1.057;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:319,51:0.14:370
chr1	156347834	rs11586833	T	A	5011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.06;ReadPosRankSum=0.942;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:45,218:0.83:263
chr1	156351066	rs942679	C	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.299;SOR=1.583;set=HC	GT:AD:AF:DP	0/1:128,25:0.16:153
chr1	156351699	rs3748569	G	A	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:47,133:0.74:180
chr1	156351792	rs3748568	G	A	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:47,111:0.70:158
chr1	156352447	rs954916	G	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr1	156354367	rs6668857	A	G	7039.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:115,312:0.73:427
chr1	156376680	rs6662064	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	156446242	rs2274316	C	A	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.431;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	156446450	rs12131289	C	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	156446903	rs2274317	T	C	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	156450740	rs1925950	G	A	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	156452870	rs2282286	G	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	156496188	rs6427315	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	156498673	rs1171564	T	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:25,74:0.75:99
chr1	156499969	rs1171566	T	C	5500.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:78,222:0.74:300
chr1	156500128	rs746505	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr1	156502991	rs1609666	A	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr1	156503541	rs6699212	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	156505061	rs942965	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:13,49:0.79:62
chr1	156509552	rs1171570	C	G	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	156518379	rs744224	G	A	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:34,106:0.76:140
chr1	156520173	rs1778819	T	A	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	156520320	rs1778818	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	156524221	rs6694580	G	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:15,68:0.82:83
chr1	156526234	rs2489139	C	T	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	156526387	rs11264498	C	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=6.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.814;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:132,33:0.20:165
chr1	156526444	rs2488269	T	C	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	156526564	rs2489138	C	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr1	156531871	rs1171545	A	G	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	156532344	rs7548309	T	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.649;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr1	156532908	rs16837492	C	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.601;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:130,28:0.18:158
chr1	156532977	rs1171547	T	C	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	156536123	rs2066378	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	156536133	rs4382715	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	156536221	rs2066377	G	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	156536251	rs947662	T	C	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	156536353	rs947663	A	G	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	156536480	rs947664	T	C	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	156539154	rs6427319	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	156551248	rs192869620	G	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:17,71:0.81:88
chr1	156551848	rs6682716	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.749;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr1	156553102	rs34924172	AG	A	2169.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:33,79:0.71:112
chr1	156553762	rs11264502	A	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	156556321	rs10796961	G	A	7329.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	156561414	rs6698493	T	C	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	156561557	rs149629319	G	GGGGCCGGGCC,GGGGTCGGGCC	1321.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	1/2:0.25,0.75:32
chr1	156561651	rs7516274	G	C	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	156562008	rs1925949	G	A	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	156562143	rs942959	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	156563375	rs6427321	G	A	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	156563726	rs6427322	A	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	156563813	rs6668178	G	A	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	156563852	rs942963	C	T	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	156563898	rs1270	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	156564640	rs3795732	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.704;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.277;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:61,10:0.14:71
chr1	156564922	rs3795733	C	T	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.479;QD=3.09;ReadPosRankSum=0.966;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:298,84:0.22:382
chr1	156565049	rs72559129	A	AAC	18909.73	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr1	156565834	rs12024215	G	C	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr1	156567496	rs879461	C	T	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	156594364	rs12405992	T	C	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:28,98:0.78:126
chr1	156617968	rs2277873	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:3,44:0.94:47
chr1	156618768	rs4661209	T	G	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,41:0.85:48
chr1	156622252	rs1056695	G	A	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:23,102:0.82:125
chr1	156626358	rs6700323	C	A	258.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr1	156626920	rs7524611	T	C	8750.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	156628717	rs951964	C	A	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:13,65:0.83:78
chr1	156629037	rs11360	A	G	386.78	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	156639000	rs1046650	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr1	156639636	rs11549292	G	A	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=2.103;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:364,93:0.20:457
chr1	156639753	rs11582300	G	A	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.935;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.714;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:436,105:0.19:541
chr1	156640156	rs3748570	G	A	2007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.327;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:466,138:0.23:604
chr1	156640308	rs3748571	C	T	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.583;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:332,119:0.26:451
chr1	156640503	rs3828043	C	T	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.630;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:289,82:0.22:371
chr1	156640678	rs2886443	G	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-1.742;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:123,31:0.20:154
chr1	156641537	rs951781	C	T	4461.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:47,191:0.80:238
chr1	156646668	rs4278369	A	G	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	156670545	rs4661213	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	156705593	rs4311877	G	C	6514.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	156706559	rs8658	A	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	156707775	rs6670122	T	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	156708244	rs28697076	C	T	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.927;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:331,85:0.20:416
chr1	156713512	rs4437869	C	T	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.86;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	156737969	rs11264542	C	T	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.090;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:143,47:0.25:190
chr1	156752048	rs2274503	C	G	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	156752231	rs367770256	AT	A	386.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	156760887	rs11264554	C	A	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:41,113:0.73:154
chr1	156784982	rs926103	T	C	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	156785617	rs1800601	G	A	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	156785762	rs11325907	AG	A	8412.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	156785771	rs7546838	A	G	7965.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	156785779	rs1800600	G	A	7129.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	156814027	rs56252149	G	A	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	156814478	rs41267423	G	A	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	156818647	rs11590051	T	C	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	156837847	rs16837724	T	C	9104.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:118,397:0.77:515
chr1	156845492	rs144271100	A	AGT,AGTGT	2638.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.639;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=33.83;ReadPosRankSum=0.618;SOR=1.688;set=HC	GT:AD:AF:DP	1/2:2,20,56:0.26,0.72:78
chr1	156846120	rs1800880	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.255;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chr1	156848995	rs6337	C	T	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:27,92:0.77:119
chr1	156874874	rs78436112	TGG	T	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=0.544;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	156875037	rs6676171	T	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.398;SOR=1.461;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr1	156875092	rs4661074	G	A	2582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.50;ReadPosRankSum=0.282;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:18,64:0.78:82
chr1	156875097	rs4661075	G	A	2592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.01;ReadPosRankSum=-0.051;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:19,62:0.77:81
chr1	156875107	rs2644590	C	A	2976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.35;ReadPosRankSum=-0.757;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:23,82:0.78:105
chr1	156875377	rs2644591	G	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	156875985	rs2644593	G	A	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	156877457	rs1952294	T	C	8911.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	156882261	rs57731889	C	T	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.015;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:164,64:0.28:228
chr1	156883493	rs11264581	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.093;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:112,22:0.16:134
chr1	156883546	rs12137505	A	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-1.171;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:148,43:0.23:191
chr1	156884365	rs749256	T	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.003;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:111,30:0.21:141
chr1	156894006	rs822438	C	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	156899248	rs181591181	G	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.892;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr1	156902259	rs822430	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	156907081	rs945508	T	C	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	156907115	rs868188	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	156914240	rs5778015	CCATT	C	1507.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	156918137	rs12138039	C	T	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:50,170:0.77:220
chr1	156939175	rs1336149	C	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	156941412	rs12136088	T	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.460;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:115,20:0.15:135
chr1	156946898	rs1006168	T	G	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.459;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:150,52:0.26:202
chr1	156947928	rs16837897	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	156948956	rs3831270	CCCT	C	1546.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr1	156949153	rs36031299	CT	C	126.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=16.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=1.372;SOR=2.603;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	156954267	rs6427339	C	T	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	156954384	rs6427340	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	156956057	rs3737599	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	157062739	rs12136960	C	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=1.032;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr1	157069154	rs16838075	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.840;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr1	157485561	rs3811035	G	A	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	157485720	rs1002967	T	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	157489516	rs1332714	T	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr1	157491173	rs6427383	T	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	157497263	rs3761961	T	C	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	157508882	rs6427384	C	T	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	157509025	rs2012199	C	T	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	157514097	rs6679793	A	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	157550066	rs10489673	T	C	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-3.565;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:213,57:0.21:270
chr1	157559122	rs11582663	C	T	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-1.027;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:143,50:0.26:193
chr1	157567751	rs1361889	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.220;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:150,30:0.17:180
chr1	157651032	rs7546300	T	A	223.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.86;ReadPosRankSum=-0.282;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	157668390	rs7522061	T	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:33,120:0.78:153
chr1	157668427	rs12140725	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:20,79:0.80:99
chr1	157669668	rs10489678	G	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr1	157670290	rs945635	C	G	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:34,110:0.76:144
chr1	157718231	.	C	CAAAT	1586.73	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr1	157718283	rs6696643	A	T	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr1	157737504	rs2873413	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	157740186	rs10540465	GTC	G	3881.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:32,94:0.75:126
chr1	157740189	rs57139984	A	G	3890.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:32,97:0.75:129
chr1	157744142	rs6700883	A	T	1642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=1.346;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:13,69:0.84:82
chr1	157767519	rs41273453	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr1	157768000	rs3811024	G	C	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:15,55:0.79:70
chr1	157771880	rs4971154	C	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.411;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:153,42:0.22:195
chr1	157801862	rs147557606	A	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=1.717;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr1	157802979	rs2261295	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.881;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:99,17:0.15:116
chr1	157806006	rs2765503	G	A	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-1.043;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:121,37:0.23:158
chr1	157811392	rs2260040	G	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr1	158047657	rs12133744	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr1	158056299	rs7367384	C	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr1	158057420	rs7514301	A	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr1	158058109	rs6427419	C	A	2636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=0.451;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:24,115:0.83:139
chr1	158066834	rs6427420	A	G	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:22,91:0.81:113
chr1	158067047	rs874844	A	C	194.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	158067060	rs11339854	TG	T	107.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	158153996	rs426336	T	C	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	158224575	rs55696033	CTGTGTG	CTG,C	657.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=167;set=Intersection	GT:AF:DP	0/1:0.49:68
chr1	158389208	.	G	GA	81	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=8;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=1;NR=7;PP=81;QD=12.25;SC=TTAATCAATTGAAAAAAAACC;SbPval=0.37;Source=Platypus;TC=35;TCF=2;TCR=33;TR=8;WE=158389216;WS=158389198;set=Platypus	GT:AD:AF:DP	1/0:27,8:0.23:35
chr1	158389659	rs58605957	T	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	158389693	rs77441663	C	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr1	158390252	rs12239443	T	G	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=4.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-1.618;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:128,39:0.23:167
chr1	158390501	rs34616883	G	A	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.446;QD=1.27;ReadPosRankSum=-1.846;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:327,63:0.16:390
chr1	158435278	rs1573519	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.092;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:87,16:0.16:103
chr1	158436299	rs4657080	T	C	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.727;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.114;QD=2.47;ReadPosRankSum=1.335;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:132,30:0.19:162
chr1	158436354	rs67123344	AT	A	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.609;QD=3.20;ReadPosRankSum=-1.238;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr1	158450192	rs61741711	C	T	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=4.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-1.016;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:270,70:0.21:340
chr1	158450314	rs6679056	A	G	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.042;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:267,77:0.22:344
chr1	158507157	rs2051665	A	T	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.432;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.733;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr1	158507160	rs2051666	T	G	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=6.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-1.717;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:43,23:0.35:66
chr1	158507222	rs5778082	GA	G	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.633;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:114,46:0.29:160
chr1	158507360	rs77684327	G	C	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.460;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:98,22:0.18:120
chr1	158507398	rs2051067	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=1.098;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:60,9:0.13:69
chr1	158549421	rs77690058	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-1.831;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr1	158565115	rs1332688	G	T	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	158577167	rs2427808	A	T	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:20,76:0.79:96
chr1	158580921	.	G	GCACACACA	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=36.29;ReadPosRankSum=1.465;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	158582646	rs2251969	T	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.973;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:108,27:0.20:135
chr1	158584103	rs57778257	G	GA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.613;QD=5.34;ReadPosRankSum=-0.758;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr1	158587390	rs857716	C	T	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.986;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:122,37:0.23:159
chr1	158587784	rs857717	T	G	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	158587858	rs28525570	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.536;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:76,15:0.16:91
chr1	158592935	rs3753068	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.990;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:100,19:0.16:119
chr1	158595824	rs56954229	T	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	158595842	rs11265038	C	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr1	158596524	rs12088990	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	158597507	rs3737515	G	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.800;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:197,38:0.16:235
chr1	158606449	rs3738791	G	T	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.000;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr1	158607788	rs2518492	T	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	158609300	rs17635857	C	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-1.273;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	158612236	rs863931	A	G	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.086;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:120,45:0.27:165
chr1	158614198	rs6702040	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.010;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr1	158618223	rs857677	C	T	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	158618480	rs11265044	A	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr1	158619728	rs2482965	A	C	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr1	158639601	rs2298801	A	G	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=1.378;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:25,74:0.75:99
chr1	158644105	rs703116	T	A	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:39,133:0.77:172
chr1	158647495	rs325996	A	T	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	158647522	rs703121	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=0.588;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:140,21:0.13:161
chr1	158647631	rs325995	T	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	158654786	rs385096	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	158654852	rs857937	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr1	158655036	rs435080	G	A	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	158655162	rs2564859	C	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	158656281	rs2564858	T	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	158656347	rs111674514	C	CAGAG	907.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.47;ReadPosRankSum=1.435;SOR=0.299;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr1	158669694	rs144883209	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.226;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:105,23:0.18:128
chr1	158687163	rs28568406	G	A	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-0.580;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:190,64:0.25:254
chr1	158687224	rs857703	G	A	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.912;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:186,64:0.26:250
chr1	158725080	rs16841001	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.687;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:139,40:0.22:179
chr1	158735595	rs857824	C	T	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:18,91:0.83:109
chr1	158735691	rs857825	T	C	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:36,103:0.74:139
chr1	158735740	rs857826	A	G	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:33,97:0.75:130
chr1	158735892	rs857827	A	G	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:26,93:0.78:119
chr1	158736215	rs6666753	G	A	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	158736445	rs1864346	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr1	158736517	rs1864347	A	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	158813819	rs857870	A	G	6040.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.71;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	158817474	rs2261107	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	158906555	rs1633280	A	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	158909164	rs2325704	C	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	158913525	rs856082	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.05;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	158913525	.	ATATGCAC	GTATGCAC,GTATGCAT	466	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=27,6;NR=8,1;PP=466,26;QD=14.3077489299;SC=AGACTTTCCTATATGCACGGT;SbPval=0.55;Source=Platypus;TC=35;TCF=27;TCR=8;TR=35,7;WE=158913540;WS=158913515;set=Platypus	GT:AF:DP	0/1:1.00:35
chr1	158913532	rs4656498	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.614;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr1	158943295	rs370309729	TCACA	T,TCACACACA	826.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	0/1:0.90:21
chr1	158943382	rs12071136	C	A	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:17,83:0.83:100
chr1	158946629	rs145608153	A	AATATATGTAT	644.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	158946658	rs145640162	CTATATATATATATATATATATATATATA	C,CTATATATATA	299.27	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=9;set=Intersection	GT:AF:DP	1/1:0.89:9
chr1	158986477	rs866484	G	C	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.027;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:216,60:0.22:276
chr1	158987941	rs856046	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.606;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr1	158988463	rs41264055	G	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	159002222	rs861318	A	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	159002301	rs2518553	T	C	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.189;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	159002377	rs1057027	C	A	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	159002389	rs1057028	T	A	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	159169463	rs3027001	C	T	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.83;ReadPosRankSum=-0.537;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:20,69:0.78:89
chr1	159169641	rs862999	T	C	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	159174824	rs863001	G	C	11450.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	159174885	rs7550207	T	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.612;QD=2.03;ReadPosRankSum=-1.908;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:252,61:0.19:313
chr1	159174920	rs863002	C	T	4018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.684;QD=19.60;ReadPosRankSum=-0.110;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:37,168:0.82:205
chr1	159175004	rs17838198	CT	C	1548.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	159175193	rs3027016	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr1	159175354	rs12075	G	A	10648.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	159175527	rs13962	G	A	6249.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:76,264:0.78:340
chr1	159272060	rs2251746	T	C	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:48,114:0.70:162
chr1	159320979	rs10908710	G	A	10482.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr1	159402584	rs11419544	G	GT	2647.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	159409196	rs6691297	T	C	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	159409533	rs10908721	G	A	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	159409734	rs10908722	G	T	11893.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr1	159409857	rs12048482	A	G	9129.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	159505101	rs35393723	G	A	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:36,121:0.77:157
chr1	159505297	rs4656837	C	T	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.443;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:216,66:0.23:282
chr1	159558258	rs2808661	A	G	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	159684047	rs113155790	CCACACACA	C	723.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	159684186	rs1417938	T	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	159778983	rs12083967	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr1	159783148	rs55650803	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.700;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr1	159783225	rs78228389	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.112;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:127,32:0.20:159
chr1	159785284	rs4411129	C	G	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.891;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:105,32:0.23:137
chr1	159785370	rs4301626	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.437;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:126,26:0.17:152
chr1	159785425	rs4443889	A	G	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=2.347;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:94,21:0.18:115
chr1	159799599	rs11422063	C	CA	3087.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	159799910	rs34687326	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.622;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:152,31:0.17:183
chr1	159824967	rs2501340	G	C	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-1.745;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:257,49:0.16:306
chr1	159825916	rs11587021	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.014;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:91,21:0.19:112
chr1	159827456	rs2494503	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.846;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr1	159828128	rs2494504	A	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	159828746	rs2501337	G	A	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	159832425	rs2494507	G	A	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	159842088	rs2494518	T	A	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	159842103	rs11265289	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	159842691	rs4460634	C	G	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	159854392	rs2501325	C	A	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	159860259	rs2501320	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.711;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.587;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr1	159889686	rs2252815	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:79,30:0.28:109
chr1	159890459	rs11265297	T	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr1	159897681	rs60386431	TA	T	1135.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=0.977;QD=13.36;ReadPosRankSum=0.867;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:10,75:0.88:85
chr1	159922369	rs2840583	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.519;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr1	159923111	rs2789417	T	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.768;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:56,9:0.14:65
chr1	160061934	rs12408242	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr1	160061959	rs12401728	C	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr1	160062472	rs2295622	C	T	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:45,138:0.75:183
chr1	160062727	rs2295621	A	G	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:21,85:0.80:106
chr1	160064592	rs12044027	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr1	160068068	rs12046504	A	C	203.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	160085868	rs2854244	A	C	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=1.290;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr1	160090674	rs2854246	T	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	160090681	rs67915591	CCCTT	C	3571.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	160093222	rs2820581	C	T	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	160093648	rs41265763	G	A	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:12,79:0.87:91
chr1	160093911	rs2820582	T	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	160093927	rs2854248	T	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr1	160095127	rs7548116	T	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.023;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:64,11:0.15:75
chr1	160097315	rs2295623	C	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr1	160097666	rs6695366	G	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	160098927	rs5778151	A	AG	1045.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	160100201	rs17846713	C	G	4904.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:65,204:0.76:269
chr1	160124875	rs6427504	G	A	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:18,78:0.81:96
chr1	160128671	rs4656888	G	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	160128994	rs10908764	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	160134205	rs11265338	C	T	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	160136350	rs7529215	G	A	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:57,183:0.76:240
chr1	160137300	rs4656889	A	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=1.827;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr1	160141196	rs625549	C	T	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	160141268	rs12058214	T	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=2.007;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:138,29:0.17:167
chr1	160141286	rs625129	C	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.865;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:126,37:0.23:163
chr1	160141491	rs142338502	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.596;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:122,45:0.27:167
chr1	160141636	rs1891265	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	160147502	rs731852	T	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.616;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:60,21:0.26:81
chr1	160151450	rs7519748	T	C	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.552;QD=4.01;ReadPosRankSum=0.788;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:128,41:0.24:169
chr1	160151624	rs36097870	G	GC	3032.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.649;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:570,155:0.21:725
chr1	160160865	rs41265773	C	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	160163446	rs3747621	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr1	160163509	rs3747623	C	T	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,60:0.78:77
chr1	160164668	rs1186693	T	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	160165095	rs2275703	A	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.274;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-1.867;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr1	160165451	rs10908769	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	160168368	rs822450	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:20,87:0.81:107
chr1	160169473	rs959166	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	160169773	rs12133035	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.375;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr1	160178356	rs667306	A	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	160247185	rs10594	G	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.385;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:82,24:0.23:106
chr1	160251792	rs2795067	A	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.338;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:97,22:0.18:119
chr1	160260233	rs2298104	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.037;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr1	160263124	rs1317944	C	T	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.173;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:157,46:0.23:203
chr1	160265515	rs3789042	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr1	160275434	rs2066320	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	160303416	rs1802778	G	A	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.137;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:205,55:0.21:260
chr1	160309664	rs1886419	T	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=1.438;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:105,15:0.12:120
chr1	160313733	rs1886417	C	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=5.968;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.015;QD=2.16;ReadPosRankSum=-0.033;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:67,17:0.20:84
chr1	160319055	rs12239946	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	160393905	rs12086448	A	G	1397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.864;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=1.601;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:230,83:0.27:313
chr1	160456712	rs3795329	G	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr1	160458782	rs3795327	A	G	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:53,129:0.71:182
chr1	160459909	rs12119876	C	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.371;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:76,17:0.18:93
chr1	160460099	rs11265413	T	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	160466356	rs3795326	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr1	160519812	rs3832278	C	CA	393.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr1	160519815	rs58960001	C	CT	393.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr1	160580015	rs1061217	A	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr1	160582213	rs2025515	C	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr1	160582248	rs11265449	C	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr1	160585554	rs149160	C	G	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	160585706	rs151607	C	T	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:12,59:0.83:71
chr1	160616703	rs2295612	G	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.151;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:196,53:0.21:249
chr1	160616768	rs12076998	G	A	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:17,93:0.85:110
chr1	160650913	rs4656926	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	160717872	rs527733	T	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	160722064	rs527342	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	160766179	rs3831924	C	CT	42.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=-0.842;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	160786670	rs560681	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr1	160789196	rs537540	A	C	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	160793442	rs474131	A	G	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=6.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-1.712;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:177,44:0.20:221
chr1	160793560	rs509749	A	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.146;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:122,39:0.24:161
chr1	160797323	rs577453	T	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr1	160797514	rs576334	C	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=2.341;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:114,36:0.24:150
chr1	160797684	rs574610	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:33,9:0.21:42
chr1	160801046	rs480104	C	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	160803802	rs11265493	A	G	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:10,46:0.82:56
chr1	160809003	rs6682654	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	160832212	rs11265500	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:37,10:0.21:47
chr1	160849030	rs3766358	T	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr1	160849060	rs3766359	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr1	160849082	rs3820094	A	G	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:19,66:0.78:85
chr1	160849367	rs2274905	G	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr1	160850280	rs4656957	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr1	160850936	rs2236515	T	C	9978.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:120,440:0.79:560
chr1	160851594	.	GAAAAAAAA	G	270.52	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.140;QD=30.06;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr1	160851619	rs10908808	A	G	833.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.385;QD=29.78;ReadPosRankSum=0.807;SOR=0.512;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr1	160851826	rs2274907	A	T	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:21,87:0.81:108
chr1	160851894	rs2274908	G	A	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:16,76:0.83:92
chr1	160852022	rs2274909	C	T	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:43,119:0.73:162
chr1	160852046	rs2274910	T	C	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:35,91:0.72:126
chr1	160854526	rs2297559	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr1	160920813	rs790059	A	G	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=26.36;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	160969008	rs3831190	T	TG	2127.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	160969585	rs790056	C	T	8745.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	160971146	rs790055	A	G	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	160990875	rs28365980	TC	CA	15145.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	160990878	rs28365978	C	T	14955.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	161008572	rs3766383	C	A	7682.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	161008803	rs3766382	G	T	5683.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.73;ReadPosRankSum=1.414;SOR=0.567;set=HC	GT:AD:AF:DP	1/1:1,204:1.00:205
chr1	161010774	rs2516841	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	161011716	rs2774276	G	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	161012760	rs2073653	T	C	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	161022380	rs4396136	G	A	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	161023279	.	TC	T	840.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.22;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	161023281	.	TCTCTCTCTCTCTCTC	T	448.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.131;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.44;ReadPosRankSum=1.861;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr1	161026079	rs7516231	A	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	161043735	rs4656285	A	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	161043764	rs4656978	G	A	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	161047125	rs60601836	CTATA	C	857.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	161049358	rs3820097	G	A	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	161068836	rs11576830	A	C	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-1.046;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:412,124:0.23:536
chr1	161089450	rs111473243	C	CTAAACT	552.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr1	161126975	rs12031437	C	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.766;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:87,15:0.15:102
chr1	161136843	rs2301287	C	G	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=1.029;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:130,28:0.18:158
chr1	161143933	rs147487659	T	C	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr1	161143969	rs11265561	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.515;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	161160872	rs34884997	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	161162173	rs7512012	G	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	161163037	rs4233367	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr1	161163633	rs3813622	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-2.444;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:241,44:0.15:285
chr1	161166723	rs35630547	G	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.951;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	161176137	rs4656993	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.981;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:71,16:0.18:87
chr1	161179877	rs4656994	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-1.338;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:96,26:0.21:122
chr1	161180482	rs35086265	G	A	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-1.933;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:132,31:0.19:163
chr1	161183516	rs1136207	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.118;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:114,23:0.17:137
chr1	161184059	.	CTG	C	913	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=3;MGOF=14;MMLQ=24;MQ=59.57;NF=0;NR=16;PP=913;QD=57.25;SC=AAATTGGCCTCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=33;TCF=1;TCR=32;TR=16;WE=161184068;WS=161184049;set=Platypus	GT:AD:AF:DP	1/0:17,16:0.48:33
chr1	161192845	rs72374375	CCACACACACACA	C,CCACACACACACACA	1408.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=15.83;ReadPosRankSum=-1.785;SOR=0.674;set=HC	GT:AD:AF:DP	1/2:18,29,42:0.33,0.47:89
chr1	161196166	rs3813628	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.809;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	161200487	rs4073054	C	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	161200586	rs2307418	T	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-1.092;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:117,23:0.16:140
chr1	161200759	.	G	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=4.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=2.052;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:106,37:0.26:143
chr1	161201350	rs11265567	G	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.858;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	161201350	.	GCG	TCA	191	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=1;NR=5;PP=191;QD=40.7446458104;SC=GAGTGCAGTGGCGTGATCTCT;SbPval=0.94;Source=Platypus;TC=23;TCF=9;TCR=14;TR=6;WE=161201360;WS=161201340;set=Platypus	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	161201352	rs11265568	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.242;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	161202605	rs2307424	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.889;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr1	161204906	rs3123553	G	A	115.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.47;ReadPosRankSum=-0.921;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	161228800	rs4078110	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:45,14:0.24:59
chr1	161253657	rs4255401	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	161253684	rs66526557	AT	A	69.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	161276434	rs6674383	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	161479745	rs1801274	A	G	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:51,222:0.81:273
chr1	161495477	rs72633678	A	T	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	161495885	rs404508	T	C	6046.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	161518172	rs147342954	C	T	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.122;MLEAC=1;MLEAF=0.500;MQ=44.32;MQRankSum=-0.426;QD=20.11;ReadPosRankSum=0.193;SOR=1.408;set=HC	GT:AD:AF:DP	0/1:13,38:0.75:51
chr1	161518879	rs142265629	A	G	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,56:0.77:73
chr1	161518971	rs371389552	C	T	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.76;QD=29.20;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	161559327	rs3933769	A	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;MQ=59.81;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	161561151	rs74341264	G	A	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=54.52;MQRankSum=0.799;QD=4.13;ReadPosRankSum=-1.298;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:157,62:0.28:219
chr1	161561236	rs143998157	C	T	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:35,94:0.73:129
chr1	161561287	rs151302833	A	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	161565324	rs61801822	C	T	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	161565408	rs114010589	T	C	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-11.028;QD=1.60;ReadPosRankSum=3.436;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:378,80:0.17:458
chr1	161565479	rs111504845	G	A	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-7.707;QD=2.11;ReadPosRankSum=0.530;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:244,55:0.18:299
chr1	161565604	rs147165343	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.120;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.87;MQRankSum=1.928;QD=2.92;ReadPosRankSum=1.934;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	161576227	rs145679054	C	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.33;MQRankSum=-0.358;QD=5.03;ReadPosRankSum=-0.354;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	161577204	rs200837054	G	T	3394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=52.47;MQRankSum=1.007;QD=18.55;ReadPosRankSum=-1.247;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:46,137:0.75:183
chr1	161577657	rs61802306	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.179;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.725;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-8.349;QD=2.73;ReadPosRankSum=0.949;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:132,31:0.19:163
chr1	161577669	rs61802307	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=6.482;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-7.367;QD=2.39;ReadPosRankSum=1.880;SOR=1.363;set=HC	GT:AD:AF:DP	0/1:140,30:0.18:170
chr1	161594226	rs61803008	C	T	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	161594246	rs61803009	G	T	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	161594525	rs61803010	GT	CG	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	161596283	rs418215	G	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	161599693	rs76714703	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.45;QD=28.99;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	161600287	rs143868437	AT	A	554.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	161601097	rs67020125	C	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.253;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:62,11:0.15:73
chr1	161601133	rs61803027	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	161641384	rs6665610	G	A	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.83;MQRankSum=-1.277;QD=18.48;ReadPosRankSum=1.747;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:17,53:0.76:70
chr1	161643269	rs2045571	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.903;MLEAC=1;MLEAF=0.500;MQ=50.18;MQRankSum=2.682;QD=14.66;ReadPosRankSum=0.380;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	161643327	rs112516248	C	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr1	161643663	rs112422693	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=9.700;MLEAC=1;MLEAF=0.500;MQ=46.75;MQRankSum=-2.100;QD=15.97;ReadPosRankSum=0.566;SOR=2.209;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	161645259	rs1674759	T	G	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	161676904	rs1340977	T	C	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	161676970	rs1340978	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	161680258	rs6427618	G	A	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr1	161680413	rs112039702	GA	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-1.166;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	161683136	rs11746	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.856;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:129,37:0.22:166
chr1	161695639	rs7520519	G	T	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	161696088	rs1417582	T	C	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	161696782	rs11585450	G	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.077;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:66,11:0.14:77
chr1	161697319	rs34868416	G	A	4617.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:43,195:0.82:238
chr1	161722272	rs10917852	C	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	161722779	rs35439833	C	CAAA	1879.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.59;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	161736035	rs2298019	A	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	161751741	rs1058405	A	G	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.50;ReadPosRankSum=0.292;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:25,62:0.71:87
chr1	161822959	rs2340717	C	T	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	161823011	rs2257107	T	A	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr1	161823197	rs3215134	G	GT	4503.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	161829973	.	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=3.087;QD=0.78;ReadPosRankSum=-0.392;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr1	161928327	rs9482	A	G	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	161954448	rs12726227	C	T	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	161967681	rs2499836	A	G	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.510;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:118,47:0.28:165
chr1	161969986	rs4656343	G	A	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:29,116:0.80:145
chr1	161976234	rs12022536	A	G	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	161976272	rs34863451	G	GA	1623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.532;QD=14.00;ReadPosRankSum=2.006;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:22,94:0.81:116
chr1	162302635	rs347306	T	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr1	162302689	rs347307	C	T	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:26,118:0.82:144
chr1	162313597	rs347278	T	C	5396.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	162335052	rs905721	C	T	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:19,60:0.76:79
chr1	162335424	rs1964052	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	162343774	rs7512126	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.331;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:108,21:0.16:129
chr1	162344102	rs2282397	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.262;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:165,33:0.17:198
chr1	162344390	rs164159	A	G	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	162345091	rs164181	G	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.775;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	162345294	rs3737312	G	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr1	162346433	rs150155141	CA	C	117.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:72,18:0.20:90
chr1	162348662	rs164188	C	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	162351586	rs901662	G	A	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:24,75:0.76:99
chr1	162352941	rs11806859	G	A	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:37,167:0.82:204
chr1	162367071	rs17852003	C	T	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.827;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:253,63:0.20:316
chr1	162367235	rs164124	G	A	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:34,135:0.80:169
chr1	162467014	rs10919549	C	G	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.18;ReadPosRankSum=0.347;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:18,63:0.78:81
chr1	162470961	rs5778280	A	AT	130.70	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	162560360	.	TTC	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.621;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:70,10:0.12:80
chr1	162722846	rs1632311	C	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	162725655	rs1115570	A	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	162740327	rs1780003	T	C	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	162741868	.	A	G	127.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:39,11:0.22:50
chr1	162742180	rs1704762	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	162743418	rs1355287	G	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	162748588	rs907074	C	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	162754049	rs11338	G	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=27.41;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	162754244	rs61812969	T	G	663.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.100;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.42;MQRankSum=-4.249;QD=31.61;ReadPosRankSum=-0.442;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	162760551	rs1704754	C	T	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.68;QD=44.21;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	162760554	rs71519246	T	C	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.81;QD=43.73;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	162765475	rs2684884	G	C	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.83;QD=26.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	162766476	rs1780019	C	T	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	162774236	rs77482353	A	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr1	162775267	rs12563263	C	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=51.10;MQRankSum=-0.941;QD=0.82;ReadPosRankSum=-0.831;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:140,25:0.15:165
chr1	162822771	rs2684878	A	C	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	162822807	rs56072121	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.308;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:64,10:0.14:74
chr1	163038613	rs7515900	C	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr1	163122528	rs1354939	G	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	163142537	rs10917691	G	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	163142555	rs12035879	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	163298768	.	TA	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.41;ReadPosRankSum=0.015;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	163309302	rs2999852	C	T	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	163310020	rs78023909	G	A	149.90	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	164529284	rs141669515	GTTTT	G	1529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.838;QD=8.95;ReadPosRankSum=-1.005;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:124,47:0.27:171
chr1	164532325	rs4657364	T	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr1	164559536	rs1780335	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr1	164789444	rs1538488	A	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	165173216	rs1354509	A	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	165175374	rs4656435	G	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	165180089	rs1532815	T	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	165218634	rs4656440	C	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=1.527;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:142,38:0.21:180
chr1	165375895	rs283697	A	C	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	165376043	rs283696	T	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	165376227	rs111545739	C	CCG	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.90;ReadPosRankSum=0.978;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	165376229	rs10800095	C	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-0.835;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	165376231	.	CTG	C	102.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.191;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.56;ReadPosRankSum=0.391;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	165376233	rs10800096	G	C	83.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.276;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.473;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	165377389	rs283692	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	165377552	rs2134095	G	A	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:50,161:0.76:211
chr1	165378729	rs66800417	TACACAC	TAC,T	2510.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=68;set=Intersection	GT:AF:DP	1/1:1.00:62
chr1	165386567	rs2281986	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr1	165406195	rs149470737	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	165406243	rs77182452	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	165406313	rs77875554	T	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.503;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr1	165513439	rs285446	A	C	146.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	165513456	rs285445	A	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	165513463	rs285444	C	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	165601365	rs4147596	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	165601466	rs9333378	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	165601538	rs199532561	T	TC	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-2.680;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr1	165621129	rs10642555	C	CAAAAAAA	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=61.12;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	165623451	rs4147606	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.165;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr1	165623693	rs4147607	G	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.077;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.027;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.566;QD=3.55;ReadPosRankSum=0.551;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr1	165624799	rs8133	G	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	165630475	rs7544840	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	165630495	rs7511691	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	165630698	rs6667681	A	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	165634425	rs3820362	C	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:17,62:0.78:79
chr1	165636749	rs2176151	A	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr1	165648559	rs4646897	T	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr1	165648886	rs4646896	G	A	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.654;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=-2.169;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	165648894	rs4646895	C	G	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=5.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=-3.025;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr1	165651153	rs2882006	T	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	165651502	rs1913844	G	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	165652273	rs1143659	A	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	165652445	rs4233407	A	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	165712555	.	G	GAA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.296;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=8.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.059;SOR=1.799;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr1	165737704	rs2790053	C	G	4806.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=5.486;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=1.900;SOR=1.914;set=HC	GT:AD:AF:DP	1/1:1,190:0.99:191
chr1	165859630	rs477033	C	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	165865478	rs11553301	G	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.51;ReadPosRankSum=-0.415;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,42:0.78:54
chr1	166029970	rs4353067	T	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.689;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.640;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr1	166124134	rs896402	A	G	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	166818566	rs2075946	A	G	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:61,197:0.76:258
chr1	166827602	rs10800270	A	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr1	166829522	rs2272792	C	T	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=0.198;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:139,53:0.28:192
chr1	166838513	.	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-1.081;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	166944273	rs67253020	TCACA	T	794.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	166958601	rs2296837	T	C	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.282;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:172,41:0.19:213
chr1	166958710	rs11578336	T	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.710;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:103,19:0.16:122
chr1	166961857	rs7511933	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:12,57:0.83:69
chr1	166963234	rs3736988	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	167032796	rs12742013	C	T	377.88	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr1	167038219	rs72689400	C	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.042;SOR=1.821;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr1	167042590	rs12139875	C	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:28,70:0.71:98
chr1	167059336	rs2281964	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr1	167059462	rs2281963	G	C	4496.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:53,198:0.79:251
chr1	167059575	rs28384507	G	T	4469.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:55,202:0.79:257
chr1	167082869	rs12122365	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-1.469;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:191,45:0.19:236
chr1	167088473	rs1410244	C	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=2.515;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:58,10:0.15:68
chr1	167094908	rs12118751	G	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	167353258	rs35617253	AT	A	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.706;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:77,29:0.27:106
chr1	167367193	rs7524019	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.546;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:83,25:0.23:108
chr1	167382374	rs10753757	A	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	167382399	rs67647055	AGTGT	A,AGT	79.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	0/1:0.19:21
chr1	167403504	rs952962	A	G	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	167404078	rs3108156	G	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	167404179	rs61806155	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=0.293;QD=1.63;ReadPosRankSum=0.366;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr1	167408670	rs840016	C	T	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:29,79:0.73:108
chr1	167515272	rs7513428	T	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr1	167599533	rs3738220	C	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	167652995	rs72697727	C	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr1	167666172	rs12093287	T	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	167666218	rs12066500	C	T	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=5.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.25;ReadPosRankSum=-1.773;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:14,50:0.78:64
chr1	167666316	rs72697738	T	C	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:34,82:0.71:116
chr1	167673738	rs34762939	T	TA	595.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	167734717	rs3830183	A	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr1	167742741	rs111872540	TAGG	T	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	167778843	rs3213588	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr1	167793670	rs1476074	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	167805439	rs7550383	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr1	167806642	rs35986349	C	G	2502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=-0.707;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:48,113:0.70:161
chr1	167806647	rs1034463	T	A	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.56;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	167806696	rs1034464	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	167806714	rs1034465	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr1	167814733	rs73039577	T	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr1	167814905	rs140892164	C	G	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:29,100:0.78:129
chr1	167815167	rs2269678	T	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.550;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:112,29:0.21:141
chr1	167815610	rs2269679	C	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr1	167817639	rs203795	A	G	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	167823455	rs12760577	A	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,43:0.83:52
chr1	167823512	rs3738236	T	C	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	167825485	rs2071921	T	C	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	167825606	rs2071922	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:14,58:0.81:72
chr1	167830006	rs7518237	G	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr1	167839578	rs67878347	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.346;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	167844553	rs203826	C	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr1	167844582	rs203827	C	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	167849318	rs203847	A	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	167849414	rs203849	A	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	167889094	rs17556487	T	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	167893759	rs9618	G	A	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.763;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.688;QD=15.47;ReadPosRankSum=-0.537;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chr1	167906239	rs203788	A	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	167971979	rs436256	GC	TG	317.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	167973976	rs1060041	C	T	5533.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:68,245:0.78:313
chr1	167985326	rs3831959	TG	T	305.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	167988653	rs202255	A	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:15,46:0.75:61
chr1	167992344	rs201541	T	A	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:23,76:0.77:99
chr1	168035104	rs380095	G	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	168056724	rs275143	A	G	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:39,105:0.73:144
chr1	168059866	rs275149	A	G	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:25,125:0.83:150
chr1	168073601	rs2294817	C	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr1	168074145	rs6427119	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr1	168105581	rs200664972	A	AG	6211.73	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:79,283:0.78:362
chr1	168106716	rs6664903	T	C	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	168200733	rs11588504	T	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-1.272;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:58,26:0.31:84
chr1	168206118	rs55947108	GTTTAA	G	697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-0.835;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr1	168208308	rs12142742	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.542;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.924;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr1	168262289	rs7543224	A	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.920;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr1	168262299	rs7520743	C	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.908;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr1	168262526	rs199592560	TG	T	202.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.471;QD=3.90;ReadPosRankSum=1.927;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr1	168262527	rs12096093	G	T	178.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.611;QD=3.58;ReadPosRankSum=1.848;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr1	168510122	rs470733	T	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-6.548;QD=1.40;ReadPosRankSum=-0.284;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr1	168511155	rs76400946	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.541;QD=2.17;ReadPosRankSum=-0.634;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr1	168513067	rs61801330	C	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-4.980;QD=2.14;ReadPosRankSum=1.748;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:83,21:0.20:104
chr1	168513109	rs3820404	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-3.692;QD=0.95;ReadPosRankSum=0.341;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:127,23:0.15:150
chr1	168545949	rs34933908	G	A	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:7,139:0.95:146
chr1	168549422	rs6427130	C	T	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:21,79:0.79:100
chr1	168550535	rs79981832	A	G	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr1	168665747	rs78760104	C	CT	9276.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	168665974	rs524705	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	168670140	rs113747482	TGTGTGG	T	649.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.829;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.83;MQRankSum=-1.223;QD=21.66;ReadPosRankSum=1.700;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr1	169080837	rs1200138	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.25;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	169094100	rs968304	T	A	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.317;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:79,32:0.29:111
chr1	169099137	rs75112989	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.024;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr1	169101257	.	A	ATT	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.190;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr1	169102223	rs61803315	G	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:69,27:0.28:96
chr1	169216412	rs2040445	C	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr1	169272451	rs10800427	A	T	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.85;ReadPosRankSum=1.282;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	169272451	.	AGG	TGA	678	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5169;HP=4;HapScore=1;MGOF=0;MMLQ=26;MQ=60.0;NF=3;NR=13;PP=678;QD=45.7167421789;SC=ATAATCAAAAAGGCAATAGTT;SbPval=0.67;Source=Platypus;TC=19;TCF=4;TCR=15;TR=16;WE=169272461;WS=169272441;set=Platypus	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	169272453	rs10800428	G	A	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.47;ReadPosRankSum=1.452;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr1	169435027	rs2678166	C	T	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:14,69:0.83:83
chr1	169447008	.	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.025;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr1	169484552	rs3820060	T	G	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:12,64:0.84:76
chr1	169492676	rs9332643	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr1	169494196	rs2301515	C	T	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,44:0.85:52
chr1	169498834	rs6009	T	C	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr1	169498975	rs6030	T	C	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:45,139:0.76:184
chr1	169499190	rs2157581	A	G	411.94	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr1	169499951	rs9332620	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr1	169510380	rs9287090	G	A	2816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=1.536;QD=14.98;ReadPosRankSum=1.353;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:54,134:0.71:188
chr1	169510524	rs1800594	A	G	3138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.163;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.792;QD=16.88;ReadPosRankSum=-0.837;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:45,141:0.76:186
chr1	169511555	rs6032	T	C	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:55,204:0.79:259
chr1	169511734	rs4525	T	C	5432.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:60,243:0.80:303
chr1	169511755	rs4524	T	C	4997.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:49,210:0.81:259
chr1	169512027	rs6021	T	C	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:66,178:0.73:244
chr1	169512093	rs6017	A	G	6002.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:79,257:0.76:336
chr1	169512120	rs6016	G	A	6222.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:77,269:0.78:346
chr1	169513436	rs9287092	C	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr1	169515874	rs13306345	T	A	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:37,98:0.73:135
chr1	169519049	rs6025	T	C	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:13,98:0.88:111
chr1	169528384	rs6023	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr1	169551549	.	T	TAAA	33.73	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	169559326	rs3917853	G	A	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.702;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:84,30:0.26:114
chr1	169559333	rs3917852	AT	A	1005.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.741;QD=7.68;ReadPosRankSum=0.785;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:98,33:0.25:131
chr1	169559635	rs3917851	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.132;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.810;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr1	169563062	rs17522707	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.767;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:90,24:0.21:114
chr1	169564130	rs1569471	T	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.161;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr1	169566313	rs6127	C	T	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:128,52:0.29:180
chr1	169572543	.	CTCTGTG	C	119	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=4;MGOF=16;MMLQ=26;MQ=60.18;NF=0;NR=9;PP=119;QD=14.8888888889;SC=CCCTCTCTCTCTCTGTGTGTG;SbPval=1.0;Source=Platypus;TC=22;TCF=1;TCR=21;TR=9;WE=169572556;WS=169572524;set=Platypus	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	169572545	rs60786797	C	CTG	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	169580717	rs3917731	T	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr1	169580972	rs3917730	C	CAT	1479.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:6,37:0.86:43
chr1	169599254	rs732314	T	C	3233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=-1.302;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:39,144:0.79:183
chr1	169660781	rs12938	A	G	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	169665551	rs4987358	G	T	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	169665632	rs2223286	T	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	169676486	rs1131498	A	G	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	169679553	rs4987280	C	T	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	169695986	rs199768729	A	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:50,18:0.26:68
chr1	169698825	rs1534904	T	G	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	169698921	rs2076059	C	T	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	169699819	rs3917419	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	169768033	rs6680938	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	169768080	rs6668114	C	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	169795214	rs57068023	CT	C	425.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	169795276	rs6682137	A	C	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	169819605	rs6664099	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	169823660	rs1062976	C	T	6334.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	169823718	rs4656197	T	C	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	169831690	rs5778632	CTCTT	C	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	169831993	rs7525259	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	169835950	rs12133843	A	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	169838278	rs17603022	G	A	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	169847683	rs6683056	G	A	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	169890933	rs518928	A	G	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	169891056	rs3838393	CT	C	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	169941761	rs511443	A	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	169947146	rs11396984	C	CA	297.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.577;QD=18.61;ReadPosRankSum=-0.134;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr1	169951748	rs638486	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	169951997	rs33943686	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.753;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr1	169952385	rs2057249	G	T	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	169985796	rs16862933	A	G	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr1	170115156	rs550297	G	A	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=2.507;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:91,30:0.25:121
chr1	170135669	rs6427234	C	T	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr1	170135760	rs6427235	T	C	4067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.48;ReadPosRankSum=1.327;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:41,97:0.70:138
chr1	170135765	rs6669514	T	C	4132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.31;ReadPosRankSum=-0.226;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:41,105:0.72:146
chr1	170501385	rs7531125	A	C	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	170502517	rs1412892	A	G	271.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	170521376	rs913257	G	A	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	170633186	rs11286665	AT	A	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=0.619;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	170927572	rs35425940	T	TC	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=11.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.307;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:43,39:0.48:82
chr1	170928671	rs2294740	T	C	2008.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.29;ReadPosRankSum=0.234;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:10,89:0.90:99
chr1	170993444	rs3077629	G	GGT	608.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.74;ReadPosRankSum=0.596;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr1	171061990	rs2064074	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	171072862	rs28363536	G	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-2.715;SOR=1.572;set=HC	GT:AD:AF:DP	0/1:76,18:0.19:94
chr1	171076966	rs2266782	G	A	6161.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	171077165	rs2066529	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=6.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=1.415;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:62,14:0.18:76
chr1	171077198	rs1920149	G	A	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	171077372	rs2066534	C	G	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:18,65:0.78:83
chr1	171077502	rs28363550	TC	T	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	171083174	rs909530	C	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.286;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:142,47:0.25:189
chr1	171083242	rs2266780	A	G	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.027;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:220,71:0.24:291
chr1	171083537	rs909531	T	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	171085314	rs2066528	A	AT	62.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr1	171112490	rs1736565	C	T	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	171115483	rs72712685	A	G	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=4.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.879;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:114,30:0.21:144
chr1	171115567	rs11812044	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.431;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:245,56:0.19:301
chr1	171115645	rs11812061	G	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=1.606;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:165,44:0.21:209
chr1	171116760	rs7063044	C	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=5.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.159;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr1	171121206	rs61997161	A	T	6501.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:102,280:0.73:382
chr1	171130136	rs74548997	T	G	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,52:0.74:70
chr1	171130590	.	AACACAC	A	1207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.49;MQRankSum=0.974;QD=33.55;ReadPosRankSum=-0.630;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:4,32:0.89:36
chr1	171155032	rs2234724	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.26;ReadPosRankSum=1.486;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	171155103	rs6657314	C	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	171168584	rs2020862	CA	TG	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	0/1:25,53:0.68:78
chr1	171227216	rs10912675	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.558;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr1	171227487	rs12141555	A	G	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr1	171250044	rs742350	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.887;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:102,21:0.17:123
chr1	171252287	rs1126692	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.445;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr1	171252404	.	TAAAAAAAAAAA	T	200.77	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.46;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	171292017	rs2076322	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	171301033	rs2294483	C	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.03;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	171301043	rs71103398	G	GA	762.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.32;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	171303925	rs3820170	C	T	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	171306323	rs3737924	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.06;ReadPosRankSum=-0.609;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	171306582	rs35591720	C	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.934;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:76,24:0.24:100
chr1	171311003	rs1042772	A	C	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	171482686	rs2294292	A	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=2.149;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:97,16:0.14:113
chr1	171482699	rs2294293	G	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.062;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:72,16:0.18:88
chr1	171483717	rs1055417	A	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.763;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:85,18:0.17:103
chr1	171491264	rs3736679	T	A	644.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.327;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.48;ReadPosRankSum=-0.034;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr1	171496895	rs10753126	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	171509327	rs760644	G	A	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	171511039	rs1687064	C	G	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	171511442	rs2272810	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	171514731	rs235468	C	G	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.43;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	171514848	rs144272003	T	TTTTA	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.556;QD=5.35;ReadPosRankSum=0.883;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	171519487	rs235470	A	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	171526570	rs1687057	G	A	30144.77	.	AC=2;AF=1.00;AN=2;DB;DP=1111;set=Intersection	GT:AD:AF:DP	1/1:0,1102:1.00:1102
chr1	171526910	rs12025905	G	A	10698.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:117,474:0.80:591
chr1	171527322	rs235482	A	G	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	171546833	rs6685179	C	A	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:23,101:0.81:124
chr1	171548617	rs3817772	G	A	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:54,134:0.71:188
chr1	171548868	rs235489	T	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	171556165	rs235501	G	C	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	171558516	rs235503	C	T	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	171605539	rs61730974	A	G	4109.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:51,185:0.78:236
chr1	171605922	rs79255460	G	A	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:19,82:0.81:101
chr1	171607569	rs144871239	CAG	C	46.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr1	171607702	rs2032555	C	T	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	171679958	rs10913530	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,41:0.76:54
chr1	171707272	rs10753179	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	171750854	rs2294718	C	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	171751051	rs2294719	A	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	171751236	rs2294720	T	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	171753039	rs2232816	A	G	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:34,85:0.71:119
chr1	171754865	rs732304	A	G	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	171755170	rs2232818	G	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr1	171755182	rs2232819	G	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.456;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr1	171761458	rs2232824	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.044;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=8.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.957;SOR=0.067;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	171763522	rs909958	C	A	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:18,76:0.81:94
chr1	171763549	rs2232825	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-2.280;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:107,32:0.23:139
chr1	171765591	rs2232826	G	A	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:42,100:0.70:142
chr1	171765964	rs1801898	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=7.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-1.907;SOR=0.053;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	172038079	rs12760234	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=6.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.417;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr1	172222629	rs145316116	TCTCTCCTCTCCTCTC	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=2.056;QD=9.94;ReadPosRankSum=-0.549;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	172308238	rs6697844	C	T	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=-0.641;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:20,45:0.69:65
chr1	172308333	rs77687231	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr1	172356437	rs6688654	A	G	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	172376809	rs9425600	T	C	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,43:0.83:52
chr1	172387433	rs112122140	T	G	6189.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:127,285:0.69:412
chr1	172399346	rs200979934	TAA	T	5130.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:38,132:0.78:170
chr1	172410967	rs1063412	G	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.899;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-1.980;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:141,32:0.18:173
chr1	172411496	rs2230471	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	172411768	rs13932	T	C	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:43,123:0.74:166
chr1	172417781	rs2157451	A	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	172422209	rs2285175	C	T	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:27,84:0.76:111
chr1	172425529	rs2285170	C	G	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=1.663;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:300,73:0.20:373
chr1	172431210	rs4916261	G	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	172434309	rs9425328	G	A	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	172434375	rs2901655	G	A	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	172434812	rs2901656	C	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.137;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:151,35:0.19:186
chr1	172437592	rs1129942	G	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	172501643	rs2239816	T	C	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:47,130:0.73:177
chr1	172502340	rs2285143	T	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,32:0.86:37
chr1	172502479	rs2285144	T	C	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr1	172502727	rs55696309	TA	T	1478.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:9,45:0.83:54
chr1	172547465	rs2285664	A	G	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=-2.755;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:60,127:0.68:187
chr1	172554867	rs10752995	T	A	191.41	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	172634734	rs2639653	T	C	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	173490407	rs5778771	TA	T	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.647;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=5.060;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.156;QD=4.90;ReadPosRankSum=0.721;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr1	173490547	.	G	GA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=1.036;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr1	173556699	rs301698	G	T	197.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	173594022	rs34387166	C	T	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.112;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:153,29:0.16:182
chr1	173606179	rs12065988	A	T	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:15,58:0.79:73
chr1	173606207	rs12067170	T	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr1	173626609	.	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=1.906;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	173638537	rs58611776	CA	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=3.69;ReadPosRankSum=1.421;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr1	173702764	rs45467799	C	T	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr1	173724942	rs2273366	A	G	532.56	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr1	173797451	rs55878143	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr1	173802433	rs3835254	GA	G	341.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	173819421	rs201467171	C	CA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.031;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr1	173819743	rs66665709	C	CT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=2.811;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	173834332	.	T	TAA,TA	34.87	.	AC=1,0;AF=0.500,0.00;AN=2;DP=6;set=Intersection	GT:AF:DP	0/1:0.75:4
chr1	173835211	rs2067079	C	T	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:21,96:0.82:117
chr1	173839240	rs1322774	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	173842467	rs9286895	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	173854659	rs4652283	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	173855208	rs16846520	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:82,28:0.25:110
chr1	173855298	rs1322775	A	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr1	173876561	rs677	C	G	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr1	173878832	rs5878	T	C	5239.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:75,224:0.75:299
chr1	173878862	rs5877	T	C	5241.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:78,223:0.74:301
chr1	173907812	rs6703547	C	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:7,42:0.86:49
chr1	173921301	.	CA	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.103;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	173950205	rs7530661	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	173952539	rs6686083	T	A	1908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=0.142;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:31,84:0.73:115
chr1	173952836	rs61826774	A	G	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr1	173953860	rs60551050	G	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,43:0.80:54
chr1	173961807	rs34709821	A	AAC	269.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.376;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	174219799	rs41265242	G	T	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:37,133:0.78:170
chr1	174221887	rs11351373	GT	G	256.27	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	174241392	rs61828596	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	174417231	rs7516240	G	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	174927388	rs10798329	G	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	174934354	rs142017254	ATGTAAGCAGTGTCTCC	A	933.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr1	174969202	.	A	G	1467.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:13,61:0.82:74
chr1	174969271	rs1046439	C	T	3915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.21;ReadPosRankSum=0.575;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:48,167:0.78:215
chr1	174978933	rs41266068	G	A	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:31,109:0.78:140
chr1	174984073	rs74128533	T	C	166.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.314;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	174984074	rs7540740	C	T	1261.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=23.81;ReadPosRankSum=0.271;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:9,44:0.83:53
chr1	175046454	rs201135138	T	TA	231.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	175046488	rs2072033	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:9,55:0.86:64
chr1	175046789	rs2072032	A	G	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:52,177:0.77:229
chr1	175052828	rs2072031	G	A	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr1	175053101	rs2072030	A	T	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:24,99:0.80:123
chr1	175054548	rs1573758	C	T	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-0.528;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:23,69:0.75:92
chr1	175086461	rs6690229	A	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr1	175087677	rs6656284	G	A	3524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=-1.883;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:37,152:0.80:189
chr1	175087729	rs6696455	T	C	4942.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:55,218:0.80:273
chr1	175097349	rs7547567	C	T	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.027;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr1	175097357	rs2269652	C	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=-1.078;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr1	175097911	rs6664308	T	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.237;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr1	175105942	rs4650703	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	175113578	rs10912897	T	C	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	175116252	rs4651335	C	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr1	175116277	rs41266092	T	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-1.071;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr1	175129924	.	C	CCTT	1022.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.734;QD=30.99;ReadPosRankSum=0.374;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr1	175129945	rs60195884	TC	T	107.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=-0.801;QD=2.45;ReadPosRankSum=-0.757;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr1	175129947	.	TTCTTCTTG	T	90.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.731;QD=1.78;ReadPosRankSum=-1.096;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr1	175130204	rs1057239	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	175299301	rs2027867	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.994;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:122,32:0.21:154
chr1	175324518	rs55715761	GCA	G	345.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr1	175324521	rs55973835	A	T	354.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr1	175332047	.	C	T	548.18	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr1	175335412	rs1385540	A	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	175348723	rs859427	C	T	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	175355128	rs859436	C	G	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.88;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	175355152	rs72723450	C	T	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:37,112:0.75:149
chr1	175355391	rs859437	A	G	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	175360690	rs859444	C	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	175362736	rs3752517	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	175365663	rs859446	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=4.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=1.340;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr1	175375334	rs859400	C	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr1	175375683	rs859399	T	C	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	175375802	rs859398	T	C	8748.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,336:0.99:338
chr1	175911247	rs12123116	G	A	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.83;ReadPosRankSum=0.607;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:7,36:0.84:43
chr1	175911256	rs139905798	C	G	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.30;ReadPosRankSum=0.420;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr1	175916267	rs6674353	T	C	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	175916506	rs34893141	A	AT	122.74	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	175937540	rs4534339	C	T	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	175951347	rs10798430	T	A	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	176012466	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.652;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.000;QD=0.95;ReadPosRankSum=0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr1	176012807	rs4233165	G	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	176015573	rs10494497	T	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	176050430	rs56720201	GA	G	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.340;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.594;QD=1.89;ReadPosRankSum=-0.413;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:53,21:0.28:74
chr1	176102808	rs1330863	T	C	95.84	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	176103053	rs34010407	TAC	T	311.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr1	176103982	rs78569232	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr1	176105710	rs373330844	CA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=1.326;SOR=1.579;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	176153658	rs791744	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	176659463	rs10913241	C	T	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:45,154:0.77:199
chr1	176664842	rs12138725	C	A	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	176665102	rs67178111	ATGTGTGTGTGTGTGTGTGTG	A	411.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	176671912	rs369562585	TGAGAGAGA	T	450.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	176679384	rs61823018	G	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	176681165	.	ATGTG	A,ATG	855.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=57;set=Intersection	GT:AF:DP	1/2:0.22,0.68:37
chr1	176734756	rs3737759	C	T	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	176769358	rs10913256	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:14,50:0.78:64
chr1	176809368	rs12118034	C	T	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:51,152:0.75:203
chr1	176833497	rs12118933	G	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr1	176845528	rs2076341	C	T	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	176857347	rs2072935	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	176863836	rs2281180	G	C	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.92;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	176863836	.	GTGGCAC	CTGGCAC,CTGGCAT	1477	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=23;MQ=59.8;NF=68,16;NR=50,12;PP=1477,186;QD=12.8116204453;SC=GTCCCTTGCTGTGGCACTCCA;SbPval=0.52;Source=Platypus;TC=118;TCF=68;TCR=50;TR=118,28;WE=176863850;WS=176863826;set=Platypus	GT:AF:DP	0/1:1.00:118
chr1	176863842	rs6680908	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.114;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:94,31:0.25:125
chr1	176863867	rs2228956	T	C	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	176992553	rs172917	A	G	2627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=0.807;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:24,119:0.83:143
chr1	176992676	rs10798496	C	T	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=-2.406;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:9,40:0.82:49
chr1	176998368	rs10753142	T	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	177198998	rs3176441	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=1.665;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr1	177902388	rs3813647	G	A	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	177913980	rs532842	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	177915474	rs842192	A	C	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	177916890	.	A	AAGGGACAGGGAGGGGAGGTGAGGGG	606.73	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.29;QD=121.35;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	177923440	rs12129817	T	G	2371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-0.049;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:24,103:0.81:127
chr1	177929379	rs16828594	C	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.708;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr1	177929554	rs10913472	C	T	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:39,114:0.75:153
chr1	177929940	rs7413442	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.665;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr1	177929987	rs12040910	T	C	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	177930096	rs867275	T	C	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:42,99:0.70:141
chr1	177930642	rs945640	G	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	177930894	rs945641	C	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	177933443	rs3813651	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:78,29:0.27:107
chr1	177935203	rs954502	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.695;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr1	177935275	rs1415085	A	G	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	178062359	rs964993	G	A	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.699;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:238,68:0.22:306
chr1	178421901	rs12691482	T	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=2.223;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	178442190	rs10913557	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-1.009;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:198,42:0.17:240
chr1	178483089	rs79171732	G	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=6.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.916;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr1	178484065	rs12754916	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	178484834	rs10798611	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	178491680	rs3813637	C	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	178492447	rs7527160	T	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	178514203	rs12044868	C	A	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr1	178514560	rs34632529	A	AT	9304.73	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	178515135	rs4650992	A	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	178745798	rs11323887	CT	C	432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.796;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,34:0.74:46
chr1	178745914	rs61747558	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.807;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:114,28:0.20:142
chr1	178776985	rs6690324	G	A	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	178780650	rs12131426	A	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr1	178820159	rs1544124	C	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr1	178854162	rs6425503	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr1	179023525	rs74823172	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.75;ReadPosRankSum=-1.150;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	179023879	rs12735672	T	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr1	179040930	rs10913689	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr1	179041011	rs3820163	A	G	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:26,89:0.77:115
chr1	179051300	rs2296377	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr1	179052006	rs2274227	G	T	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:19,88:0.82:107
chr1	179054557	rs369392265	CA	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-1.681;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	179054692	rs912758	T	G	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:36,124:0.78:160
chr1	179067071	rs10913690	C	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr1	179080055	rs139985501	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.544;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:149,29:0.16:178
chr1	179086419	rs56346584	T	TA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.906;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:95,27:0.22:122
chr1	179087934	rs2171959	T	C	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:15,79:0.84:94
chr1	179089213	rs1858551	C	T	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=-0.309;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:17,57:0.77:74
chr1	179089475	rs9726961	C	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:12,49:0.80:61
chr1	179089491	rs9728480	A	C	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr1	179089518	rs9727252	C	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr1	179292442	rs2902277	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr1	179307047	rs10913726	T	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr1	179308803	rs3753524	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr1	179312235	rs10913728	G	A	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	179312525	rs12691483	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	179312559	rs13306728	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.354;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	179312752	rs10753191	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr1	179317895	rs71751221	ATGTGTGTGTGTGTGTGTGTGTGTG	A,ATGTGTGTGTGTG	553.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.61;ReadPosRankSum=-0.872;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:1,6,9:0.38,0.56:16
chr1	179319541	rs3753526	C	G	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.796;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.547;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:258,73:0.22:331
chr1	179319580	rs3753527	T	C	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-1.090;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:185,47:0.20:232
chr1	179320578	rs13306731	A	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.092;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:171,41:0.19:212
chr1	179339262	rs16854009	C	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr1	179339334	rs6666358	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	179347832	rs10798674	T	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.262;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:232,54:0.19:286
chr1	179348646	rs141815555	T	TG	889.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr1	179351606	rs4625243	G	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	179352736	rs4077551	T	C	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-2.194;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:114,31:0.21:145
chr1	179354304	rs7541905	A	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	179380472	rs5779024	GT	G	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.159;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	179380519	rs10798676	G	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.705;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	179398563	rs4652382	C	G	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	179398875	rs4652383	T	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	179401379	rs11314780	CT	C	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=1.557;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,24:0.80:30
chr1	179401503	rs12097041	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.765;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.421;QD=2.86;ReadPosRankSum=0.858;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:105,32:0.23:137
chr1	179401526	rs7550638	C	G	2469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.664;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.449;QD=17.27;ReadPosRankSum=-1.577;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:32,111:0.78:143
chr1	179401559	rs7550656	C	T	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=7.002;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-0.188;QD=16.62;ReadPosRankSum=1.615;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:31,79:0.72:110
chr1	179401564	rs10706073	CT	C	1181.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:13,71:0.85:84
chr1	179401599	rs7550736	C	T	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-1.202;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,43:0.70:61
chr1	179402037	rs199738366	C	CA	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.854;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr1	179414105	rs11577579	A	C	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:18,66:0.79:84
chr1	179418132	rs10913770	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	179418181	rs10913771	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	179437827	rs7514278	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	179452194	rs6668035	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	179452275	rs10494520	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.654;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr1	179452522	rs12407885	G	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr1	179462149	rs7549194	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	179494612	rs35486954	CTACA	C	372.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	179494665	rs4620484	C	T	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	179497359	rs6698201	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	179520254	rs1410591	C	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	179520506	rs1410592	G	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	179528917	rs12401708	G	A	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	179528942	rs12401711	G	A	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	179544898	rs1079292	T	C	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	179545050	rs12406197	C	A	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	179590352	rs61826406	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	179631242	rs35448215	G	A	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	179816017	rs79921581	C	G	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:23,74:0.76:97
chr1	179816816	rs7531195	T	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-1.355;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr1	179852159	rs78856676	GC	CT	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;JOINED;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr1	179854026	rs10913901	A	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	179877048	rs34218138	C	CT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.556;QD=4.58;ReadPosRankSum=-0.370;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	179887125	rs627897	G	A	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	179956497	rs16855052	G	T	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr1	179985156	rs16855107	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.380;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr1	179992076	rs2477117	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	180000542	rs12125245	G	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.737;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:136,32:0.19:168
chr1	180003277	rs74487535	C	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.087;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:57,18:0.24:75
chr1	180010702	rs4652461	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=6.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.301;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr1	180013103	rs56271885	CT	C	435.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr1	180034431	rs139704987	CTT	C	301.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	180049840	rs12126967	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	180067988	rs12121845	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.235;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr1	180080290	rs12126496	T	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-0.244;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr1	180144291	rs71118443	C	CA	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.452;QD=11.30;ReadPosRankSum=0.157;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr1	180145088	rs2298206	A	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	180155376	rs2298207	C	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	180155382	rs3216058	AG	A	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=60.77;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	180159797	rs3215795	TC	T	530.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	180180669	rs164980	A	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr1	180180756	rs355610	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	180240752	rs3845397	C	T	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	180243524	rs7536561	A	G	6096.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	180257692	rs2254465	A	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	180283659	rs2764433	T	C	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	180471054	rs12723183	C	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=0.345;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:12,42:0.78:54
chr1	180757056	rs3761904	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	180757117	rs34984251	G	GT	326.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	180794474	rs35706835	A	G	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:31,124:0.80:155
chr1	180803922	rs2271669	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	180849494	rs10914123	T	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	180885430	rs10732273	T	C	7809.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	180886810	rs3761905	C	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	180897521	rs7544551	C	T	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	180897569	rs3747958	C	T	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.041;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:276,65:0.19:341
chr1	180897792	rs35197779	ATGC	A	1219.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	180904978	.	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr1	180905694	rs3795503	C	T	7362.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	180913597	rs2331995	A	G	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	180953853	rs3747957	A	G	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-1.425;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:83,40:0.33:123
chr1	180962282	rs1411478	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.91;ReadPosRankSum=-0.388;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	180991665	rs12565758	C	G	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.922;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:186,58:0.24:244
chr1	181058313	rs3747955	G	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	181058618	rs1416829	C	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	181058643	rs1361365	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	181680082	rs17743547	G	A	1747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-0.689;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:33,80:0.71:113
chr1	181684605	rs12407563	A	G	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	181686216	rs7540850	T	C	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.35;ReadPosRankSum=-2.031;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:13,67:0.84:80
chr1	181688868	rs4651113	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.090;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	181689112	rs72735230	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr1	181701799	rs35737760	T	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:145,62:0.30:207
chr1	181702616	rs41304253	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=9.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.170;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:154,42:0.21:196
chr1	181706685	rs34488539	C	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.149;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:141,38:0.21:179
chr1	181708168	rs73045109	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=6.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.000;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	181714466	.	A	AT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.988;QD=0.55;ReadPosRankSum=-2.125;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:95,20:0.17:115
chr1	181725110	rs4652678	T	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	181725991	rs77951291	A	G	396.03	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr1	181726413	rs704330	G	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	181727030	rs12564606	A	T	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	181731667	rs149636359	T	TC	2092.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=2.342;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	181732695	rs72735265	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	181741301	rs199930	C	T	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	181745580	rs199932	G	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	181752923	rs36163765	AAGCTT	A	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,16:0.22:72
chr1	181754314	rs579105	G	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.927;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr1	181754803	rs473200	C	T	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=4.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=2.327;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:277,69:0.20:346
chr1	182356247	rs17462824	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	182369078	rs6698722	G	A	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:25,89:0.78:114
chr1	182429728	rs266508	T	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.596;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr1	182443462	rs649437	T	C	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.556;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-2.639;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:158,53:0.25:211
chr1	182491107	rs607269	A	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.13;ReadPosRankSum=0.507;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	182501933	rs266534	C	A	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:54,162:0.75:216
chr1	182502033	rs266535	G	T	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:17,90:0.84:107
chr1	182509269	rs266531	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,51:0.77:66
chr1	182509598	rs76889128	T	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	182520362	rs10606048	TCA	T	2346.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:15,58:0.79:73
chr1	182522552	rs266544	C	T	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:15,105:0.88:120
chr1	182522762	rs266545	C	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr1	182544815	rs11807829	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.253;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr1	182549019	rs533259	A	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.902;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr1	182569626	rs1144566	T	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-1.384;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:130,36:0.22:166
chr1	182571277	rs569790	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.108;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:94,17:0.15:111
chr1	182573227	rs509476	T	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.410;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:127,27:0.18:154
chr1	182778367	rs971040	G	A	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	182850727	rs6677840	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	182854017	rs3130492	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	182993025	rs10911194	C	T	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.689;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:299,82:0.22:381
chr1	183072590	rs2296288	T	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.701;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:130,40:0.24:170
chr1	183077615	rs3765521	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.198;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-1.569;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr1	183077618	rs3765522	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-1.521;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr1	183079509	rs2296291	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr1	183079853	rs6672093	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr1	183084607	rs3736888	AC	GA	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.074;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.227;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr1	183085696	rs6424888	A	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.319;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:93,23:0.20:116
chr1	183085755	rs20563	A	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.241;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:158,40:0.20:198
chr1	183086757	rs2296292	A	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.282;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:76,29:0.28:105
chr1	183093875	rs20557	T	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.165;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr1	183094547	rs20558	T	C	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.578;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:113,38:0.25:151
chr1	183094802	rs10797850	G	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr1	183095234	rs1886501	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.191;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:92,16:0.15:108
chr1	183097956	rs34133998	G	GTTA	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.922;QD=5.93;ReadPosRankSum=0.531;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr1	183098001	rs10797851	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.465;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	183099701	rs2296300	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:41,12:0.23:53
chr1	183100555	rs2333620	T	C	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.336;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.480;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:123,32:0.21:155
chr1	183100563	.	G	GTGTGTGTGT	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-1.161;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:107,27:0.20:134
chr1	183100596	rs2333619	A	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.360;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.331;QD=2.17;ReadPosRankSum=-0.010;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:56,8:0.12:64
chr1	183100598	rs4047797	T	G	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.123;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.241;QD=2.06;ReadPosRankSum=0.847;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:55,8:0.13:63
chr1	183101427	rs148796825	AAAT	A	88.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	183101444	rs12071514	A	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-0.307;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	183101451	rs12066735	T	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.000;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	183101471	rs12061219	G	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=-0.868;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr1	183101686	rs12095664	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.286;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:103,27:0.21:130
chr1	183104013	rs2296299	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.206;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr1	183104340	rs35182436	AT	A	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-1.182;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:81,23:0.22:104
chr1	183105399	rs2296296	C	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr1	183105534	rs20560	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.389;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:144,43:0.23:187
chr1	183105705	rs20561	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.202;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr1	183106739	rs10797854	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.140;SOR=1.819;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr1	183155482	rs684527	C	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=2.073;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr1	183155700	rs6678888	C	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.450;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chr1	183155715	rs60707856	CT	C	348.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.225;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:67,14:0.17:81
chr1	183155717	rs61418038	C	A	357.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.348;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr1	183176970	rs11480551	G	GT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.859;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr1	183177218	rs647347	A	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.210;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.152;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr1	183273751	rs2276879	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	183481943	.	CTTTTT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.21;ReadPosRankSum=0.248;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	183617266	rs17436878	C	G	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.634;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:176,43:0.20:219
chr1	183711483	rs3820689	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	183775638	rs11579867	A	T	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=0.720;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,62:0.77:81
chr1	183920063	.	C	T	1857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=3.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=-0.449;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:21,85:0.80:106
chr1	183942950	rs2296714	C	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	183944089	rs2077202	A	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	183944444	rs2378795	C	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	183947757	rs3833521	G	GA	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	184006128	rs74767794	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr1	184006549	rs114661926	C	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr1	184020945	rs2274432	G	A	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr1	184023529	rs1046934	A	C	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:47,132:0.74:179
chr1	184042058	rs11549003	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr1	184662181	rs1061508	C	T	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	184663537	rs9425343	A	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-1.618;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr1	184663581	rs9425634	T	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	184663643	rs34236444	TA	T	484.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	184671909	rs10911637	C	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	184675814	rs1062994	G	A	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.964;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:170,64:0.27:234
chr1	184677464	rs3736757	G	A	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	184681081	rs7525074	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	184681802	rs4651230	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.25;ReadPosRankSum=0.180;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	184688237	rs61823883	C	T	810.81	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:4,33:0.89:37
chr1	184695571	rs10752941	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	184706212	rs10711907	GT	G	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	184706306	rs16823413	G	A	161.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	184718601	rs16823421	G	A	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=0.490;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:9,35:0.80:44
chr1	184718750	rs35957626	GAAA	G	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=35.18;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	184760001	rs570441	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr1	184764067	rs581100	C	G	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.404;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:268,76:0.22:344
chr1	184777079	rs338564	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.380;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr1	184777101	rs338565	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=1.153;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:120,28:0.19:148
chr1	184777177	rs543912	C	A	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.450;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:293,83:0.22:376
chr1	184777467	rs338566	A	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	184801065	rs487675	T	C	4116.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:62,175:0.74:237
chr1	184868251	rs3753575	G	A	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr1	185119794	rs1544051	C	T	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	185120927	.	G	GA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.090;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr1	185984517	rs6665753	T	C	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	186022270	.	T	G	172.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	186060113	.	A	G	420.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr1	186113852	rs17531405	G	C	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:31,98:0.76:129
chr1	186141213	rs143665535	T	C	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.802;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:121,49:0.29:170
chr1	186151484	.	GT	G	2189.73	.	AC=1;AF=0.500;AN=2;DP=154;set=Intersection	GT:AD:AF:DP	0/1:22,110:0.83:132
chr1	186265948	rs1293987	T	A	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	186277088	rs68069719	G	C	15927.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=27.37;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,582:1.00:582
chr1	186296658	rs373373897	A	G	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:48,154:0.76:202
chr1	186313249	rs2950829	A	G	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.03;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	186330695	.	TA	T	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.144;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:62,26:0.30:88
chr1	186357523	rs1290390	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	186368338	rs59324641	AT	A	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=2.014;QD=3.74;ReadPosRankSum=0.636;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr1	186645851	rs201231411	AAAAT	A	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.223;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr1	186649221	rs2745557	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.389;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-1.004;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	186839861	rs7547993	G	A	2536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.14;ReadPosRankSum=1.047;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:38,110:0.74:148
chr1	186901738	rs12720584	TTCTTCTTTTAAAA	T	1158.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	186919732	rs4650709	A	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.19;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	186919993	rs969357	G	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	186925168	rs5007825	A	G	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	186925194	rs5007824	T	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.59;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	186925552	rs2307199	T	C	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	186946912	rs2307198	G	A	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	187610852	rs10159182	A	T	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.527;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:185,52:0.22:237
chr1	192128011	.	GA	G	82.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	192128183	rs4454527	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	192129370	rs4329489	G	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	192544795	rs2984920	A	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr1	192545099	rs7535818	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,14:0.23:60
chr1	192778159	rs12130714	A	T	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:6,37:0.86:43
chr1	192779227	rs2746073	T	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	192780088	rs5779653	GCT	G	2078.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.028;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:232,74:0.24:306
chr1	192780337	rs10607546	CAA	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-2.783;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr1	192780498	rs17647363	A	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr1	193051685	rs2275444	G	A	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr1	193054154	rs10921309	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.369;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr1	193074371	rs10801175	A	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	193074651	rs10921310	T	A	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	193090865	rs10737621	C	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.18;SOR=1.935;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	193094375	rs4466634	T	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	193104827	rs10921318	G	A	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	193111228	rs147167392	TGA	T	150.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	193181434	rs41302543	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr1	193202001	rs10921328	C	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	193205272	rs3738244	T	A	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	196227526	rs977157	A	G	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	196242764	rs558895	T	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	196254970	rs2477360	C	T	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	196303319	rs12410633	G	A	349.03	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	196311513	rs6658788	G	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.735;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr1	196342444	rs73067629	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	196398619	rs1538684	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr1	196398974	rs12121250	T	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr1	196461513	rs4607811	C	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	196654324	rs1061147	A	C	5002.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:67,211:0.76:278
chr1	196658497	rs482934	G	T	476.31	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr1	196658905	rs12029785	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.84;ReadPosRankSum=-0.354;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	196659237	rs1061170	C	T	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:25,88:0.78:113
chr1	196682947	rs2274700	G	A	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:60,192:0.76:252
chr1	196684574	rs6664877	CA	TG	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;JOINED;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	196684625	rs203674	G	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr1	196705926	rs375046	C	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.70;ReadPosRankSum=2.037;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	196710916	rs16840522	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	196874356	rs10801578	G	T	5238.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	196887181	rs1971579	T	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	196887457	rs10494745	G	A	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.233;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:178,57:0.24:235
chr1	196920178	rs3828032	C	T	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:22,115:0.84:137
chr1	196926956	rs3748556	C	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:25,76:0.75:101
chr1	196926973	rs3748555	C	A	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:30,86:0.74:116
chr1	196928188	rs41310132	A	G	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.50;ReadPosRankSum=0.708;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:13,52:0.80:65
chr1	197008597	rs5990	A	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	197009798	rs5998	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	197026672	rs1759009	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	197029345	rs1332661	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	197030201	rs5997	T	C	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	197030237	rs17549277	CT	C	1186.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=24.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	197031021	rs6003	C	T	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	197053373	rs12677	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	197055925	rs10754213	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	197059878	rs4915315	G	A	415.78	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr1	197059892	rs10754214	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	197059928	rs4915316	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	197070815	rs1412640	T	C	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr1	197070901	rs964201	A	G	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	197091537	rs4915337	A	T	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	197094030	rs6676084	C	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	197098326	rs33987824	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.423;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr1	197101621	rs3737111	T	C	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	197104149	rs35659894	TA	T	911.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	197109042	rs1332663	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	197112533	rs6677082	G	A	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	197113073	rs1571964	G	A	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	197141243	rs6428389	A	C	902.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.12;ReadPosRankSum=0.672;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr1	197141243	.	ATCTCTCTC	CTCTCTCTA,CTCTCTCTC	212	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=7,16;NR=4,11;PP=136,212;QD=17.2243522602;SC=CACTATATATATCTCTCTCTA;SbPval=0.61;Source=Platypus;TC=30;TCF=19;TCR=11;TR=11,27;WE=197141259;WS=197141225;set=Platypus	GT:AF:DP	0/1:0.37:30
chr1	197141251	rs6698190	C	A	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.910;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr1	197316435	rs1337167	T	C	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	197325908	rs2786098	T	G	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	197390368	rs3902057	A	G	5374.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	197398086	rs7534863	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.761;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:77,12:0.13:89
chr1	197407942	rs980371	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	197446702	rs1135810	G	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.306;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:99,27:0.21:126
chr1	197480927	rs12142127	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.072;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr1	197482167	rs2013617	C	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	197510025	rs3902061	G	T	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	197510299	rs3850628	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	197515253	rs11276673	ATGTTCAG	A	143.94	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	197515715	rs4303099	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	197515777	rs4316386	A	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	197515981	rs10922249	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	197576307	rs11411505	A	AT	1258.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	197704717	rs17641524	C	T	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.821;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:179,55:0.24:234
chr1	197741951	rs2477067	C	A	1198.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.562;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.904;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.80;ReadPosRankSum=-0.304;SOR=0.199;set=HC	GT:AD:AF:DP	1/1:2,53:0.96:55
chr1	197742171	rs2488396	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	197744098	rs117405403	G	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	197874949	rs2270763	T	C	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:31,92:0.75:123
chr1	197876393	rs188118779	A	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:10,52:0.84:62
chr1	197876533	rs1546244	C	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	197890422	rs12122995	C	G	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	197890802	rs13376365	T	C	6707.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	197898023	rs10664707	C	CA	384.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=0.111;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr1	198691478	.	AAT	A	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=1.521;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	198701289	rs1932433	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	198717218	rs71286550	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=0.200;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	200014762	rs2817008	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr1	200017586	rs2821368	C	G	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.034;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:226,68:0.23:294
chr1	200080463	rs3828110	C	T	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-2.794;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr1	200089872	rs10494808	C	T	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:25,71:0.74:96
chr1	200143442	rs1060061	T	C	806.96	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:3,28:0.90:31
chr1	200182654	rs6427805	T	C	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.11;ReadPosRankSum=-0.959;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:6,38:0.86:44
chr1	200182664	rs6427806	C	T	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.25;ReadPosRankSum=-0.644;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:7,45:0.87:52
chr1	200182721	rs61826220	G	C	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.759;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.86;ReadPosRankSum=1.422;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:12,46:0.79:58
chr1	200182725	rs76632737	G	A	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.88;ReadPosRankSum=0.980;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:12,46:0.79:58
chr1	200182732	rs116503230	AC	GT	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.484;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.79;ReadPosRankSum=0.135;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:12,46:0.79:58
chr1	200182834	rs12028402	A	G	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:20,110:0.85:130
chr1	200183398	rs10919847	C	A	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr1	200183460	rs10919848	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;MQ=59.42;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	200311868	rs2790109	C	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	200338053	rs80323082	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr1	200544650	rs35571944	TAC	T,TACAC	2879.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=118;set=Intersection	GT:AF:DP	1/2:0.82,0.15:105
chr1	200567596	rs2809358	T	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	200569392	rs2809357	C	A	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	200574959	rs2808238	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	200575744	rs10577607	CTAAA	C	1935.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	200575794	rs2794410	A	G	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	200578093	rs2794409	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	200583380	rs2808241	T	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	200594005	rs2808257	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.286;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:81,20:0.20:101
chr1	200594240	rs2809350	G	A	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	200610525	rs5780032	TA	T	208.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.06;ReadPosRankSum=-1.465;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	200618238	rs6665604	T	C	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	200619530	rs2809365	T	C	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	200816521	rs2172666	G	T	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=-0.952;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr1	200816643	rs115765157	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr1	200816658	rs2131834	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr1	200824978	rs61825260	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.12;ReadPosRankSum=1.199;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr1	200824980	rs2029752	CC	TT	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.12;ReadPosRankSum=1.199;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr1	200842110	rs968497	G	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	200868493	rs72225687	GTGTGTGTGCA	G	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=3.100;QD=3.74;ReadPosRankSum=0.204;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr1	200880869	rs45547233	A	C	3089.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:59,138:0.70:197
chr1	200880978	rs296520	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	200881172	rs296521	C	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.36;MQRankSum=1.977;QD=1.88;ReadPosRankSum=-1.871;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr1	200943793	rs71991687	CAGGA	C	5094.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	200944057	rs296565	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-1.428;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr1	200944840	rs296563	T	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	201009897	rs6427875	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr1	201016296	rs3850625	G	A	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:36,96:0.73:132
chr1	201020105	rs6702590	A	G	1184.10	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:5,52:0.91:57
chr1	201031307	rs2297903	A	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr1	201038687	rs7415038	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=0.676;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:115,16:0.12:131
chr1	201042618	rs9333652	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:15,55:0.79:70
chr1	201044748	rs1998721	A	G	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	201047075	rs4915477	A	G	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.553;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:174,51:0.23:225
chr1	201047111	rs9427714	A	G	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.851;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:235,59:0.20:294
chr1	201052310	rs12742169	A	T	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.567;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:111,28:0.20:139
chr1	201052312	rs12742170	A	C	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.951;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:111,28:0.20:139
chr1	201052474	rs12724643	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.737;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr1	201052562	rs12743065	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=0.283;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr1	201060865	rs2296383	G	A	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	201079458	rs1325309	T	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:36,75:0.68:111
chr1	201081283	rs112984935	AC	A	1927.76	.	AC=2;AF=1.00;AN=2;DB;DP=90;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:8,77:0.91:85
chr1	201112981	rs8158	A	G	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	201113118	rs3738266	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	201115822	rs3752978	A	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:36,88:0.71:124
chr1	201116018	rs3752979	C	G	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	201120730	rs2068152	C	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	201122784	rs6684980	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	201122947	rs1925361	T	G	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	201162411	rs12089471	G	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	201162643	rs10800761	G	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	201166435	rs11589317	T	C	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	201169601	rs35998091	C	T	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	201170772	rs10157730	A	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	201170824	rs10158976	C	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	201171007	rs10800762	T	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	201173104	rs832160	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	201175274	rs9651057	A	G	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	201178904	.	A	G	677	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=2;MGOF=33;MMLQ=27;MQ=48.62;NF=28;NR=11;PP=677;QD=18.2505439115;SC=GGGGGTTCTGAAGAAATGGGG;SbPval=0.98;Source=Platypus;TC=118;TCF=61;TCR=57;TR=39;WE=201178912;WS=201178894;set=Platypus	GT:AD:AF:DP	0/1:79,39:0.33:118
chr1	201178924	.	AAG	GAA	2463	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=1;MGOF=29;MMLQ=24;MQ=46.82;NF=38;NR=20;PP=2463;QD=43.3873771528;SC=GTCAGTGAATAAGGCAGGTTA;SbPval=0.92;Source=Platypus;TC=131;TCF=70;TCR=61;TR=58;WE=201178934;WS=201178914;set=Platypus	GT:AD:AF:DP	0/1:73,58:0.44:131
chr1	201181223	rs12070919	A	G	8793.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	201184097	rs4915496	G	A	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	201187764	rs10920144	T	C	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	201187828	rs3738268	T	C	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	201187954	rs6667020	C	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	201190732	rs3738269	G	A	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	201193668	rs6687494	G	T	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	201195296	rs3738271	G	A	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	201197331	rs3753971	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	201252866	rs2268147	C	T	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	201282573	rs35507614	A	G	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	201285759	rs1779297	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	201285909	rs1534051	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	201286614	rs11336457	GA	G	1314.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr1	201286628	rs1772823	C	G	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	201288007	rs1794868	G	A	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	201288898	rs1722759	A	C	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	201290968	rs1779292	T	G	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	201291066	rs2071960	C	T	7293.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	201292110	rs1779288	T	C	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	201293970	rs1620046	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	201294278	rs41269943	G	A	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	201328705	rs45576635	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.478;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr1	201331554	rs1104859	T	G	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	201331664	rs2365652	C	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	201334382	rs3729547	G	A	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	201334795	rs3729845	C	T	6316.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:70,277:0.80:347
chr1	201335899	rs1573230	C	T	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	201336984	rs3729843	C	T	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.551;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:127,45:0.26:172
chr1	201337170	rs3729842	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	201338553	rs10800776	T	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	201338586	rs10920183	A	G	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	201338896	rs10920184	T	C	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	201339043	rs12049476	C	T	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	201341175	rs45533739	CAGAAG	C	3547.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	201341341	rs868407	C	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	201354102	rs34070820	C	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	201355522	rs4128458	T	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:12,63:0.84:75
chr1	201355669	rs68021059	T	C	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:31,94:0.75:125
chr1	201355943	rs2799677	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:26,80:0.75:106
chr1	201356428	rs4915230	C	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr1	201368463	rs28364652	G	GT	5903.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.62;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	201383616	rs2026593	A	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	201383643	rs2026594	A	C	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.15;SOR=1.733;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	201434740	rs1053592	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.181;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr1	201435069	rs1053582	C	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=13.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.193;SOR=1.947;set=HC	GT:AD:AF:DP	0/1:112,19:0.15:131
chr1	201453289	rs576697	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-1.881;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	201687451	rs11576721	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.909;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:95,24:0.20:119
chr1	201749520	rs529581	G	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	201749778	rs116041086	C	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	201752429	rs527725	A	C	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	201754410	rs36061932	CT	C	756.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.859;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:13,58:0.82:71
chr1	201755469	rs12563363	C	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr1	201759624	rs184795846	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr1	201763184	rs564440	T	C	1502.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=5.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.59;ReadPosRankSum=-1.204;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:8,65:0.89:73
chr1	201763499	rs567185	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	201772863	rs34105833	T	TG	3484.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	201773707	.	TA	T	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.040;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:46,29:0.39:75
chr1	201816639	rs146207613	ATCTTTT	A	2908.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:12,71:0.86:83
chr1	201821443	rs1400875	T	C	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:16,72:0.82:88
chr1	201826340	rs2172935	C	T	3940.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:49,169:0.78:218
chr1	201826482	rs2132363	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr1	201827919	rs72742073	C	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.350;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr1	201832864	rs2494115	G	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr1	201837934	.	CGTGT	C,CGT	3045.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.000;QD=29.57;ReadPosRankSum=1.409;SOR=0.754;set=HC	GT:AD:AF:DP	1/2:4,15,84:0.15,0.82:103
chr1	201838107	rs2820310	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	201839643	.	A	G	660.81	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr1	201840059	rs150361248	GTTATT	G	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	201840464	rs2644124	T	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=28.17;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	201844128	rs2678203	G	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	201860626	rs2250377	A	G	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=3.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=2.493;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:248,67:0.21:315
chr1	201865763	rs8028	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.251;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:125,26:0.17:151
chr1	201869257	rs2820312	G	A	4780.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:60,199:0.77:259
chr1	201924749	rs3820438	G	C	3987.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:48,177:0.79:225
chr1	201926386	rs57833794	C	CT	3172.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:49,155:0.76:204
chr1	201952294	rs73074403	C	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	201952310	rs112370844	T	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	201952574	rs4950806	T	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	201952598	rs56768485	G	A	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=2.195;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:23,72:0.76:95
chr1	201952755	rs4950807	T	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	201969082	rs1130790	G	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.716;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr1	201970562	rs4332408	T	C	5356.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	201970748	rs4131469	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=6.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.455;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:71,26:0.27:97
chr1	201970986	rs35227221	C	CA	1556.74	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:5,47:0.90:52
chr1	201973565	rs3820439	G	A	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:24,84:0.78:108
chr1	201980119	rs2819361	C	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr1	201981862	rs2819362	T	C	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:33,160:0.83:193
chr1	202092046	rs3795593	C	T	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	202092360	rs3795595	G	A	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	202092415	rs3795596	A	G	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	202092580	rs7516762	T	C	6520.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	202096815	rs3820380	G	A	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	202107422	.	AAC	A	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.235;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr1	202122783	rs11590076	C	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr1	202128336	rs80312566	G	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr1	202130754	rs3934648	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:22,70:0.76:92
chr1	202155331	.	C	CTGCCCCCT	817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.36;ReadPosRankSum=-0.729;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	202155543	rs2993432	A	C	6992.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,253:1.00:254
chr1	202156135	rs139095833	C	CCCTCGCT	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	202156482	rs3010088	G	A	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	202156628	rs3010089	A	C	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	202163015	.	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.130;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	202163063	rs2361431	T	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	202163082	.	C	G	112	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=2;MGOF=22;MMLQ=24;MQ=60.0;NF=2;NR=7;PP=112;QD=16.3079125052;SC=GCGTCCGCGCCCGGCCGCCAG;SbPval=0.09;Source=Platypus;TC=40;TCF=21;TCR=19;TR=9;WE=202163090;WS=202163072;set=Platypus	GT:AD:AF:DP	0/1:31,9:0.23:40
chr1	202163364	rs2077598	C	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	202163516	rs1812761	C	A	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	202163621	rs3120747	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-0.157;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:106,18:0.15:124
chr1	202183308	rs10920362	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-2.444;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr1	202194441	rs3010067	G	C	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:13,56:0.81:69
chr1	202196931	rs1452070	G	A	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	202197161	rs3795598	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-1.989;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr1	202266547	rs788827	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.224;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr1	202266607	rs788826	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.888;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:89,22:0.20:111
chr1	202269785	rs111707317	GA	G	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=10.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=0.099;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	202274936	rs705762	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.152;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:83,16:0.16:99
chr1	202276494	rs896551	C	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.028;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:207,53:0.20:260
chr1	202287206	rs788795	T	C	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	202287537	rs788794	G	A	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	202287813	rs788793	T	C	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	202318316	rs930734	A	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	202386075	rs2843413	T	C	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	202457784	rs3820374	T	A	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	202531741	rs2249811	C	T	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	202536848	rs2292489	C	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	202565747	rs138552846	AAAAC	A	721.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	202568538	rs147123478	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr1	202572105	rs55968420	GCC	G	12075.73	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	202574784	rs1968583	G	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.812;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:163,41:0.20:204
chr1	202703053	rs4310498	G	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	202705455	rs1141109	G	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	202715244	rs3216061	G	GA	3883.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr1	202715284	rs1141108	G	A	7114.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	202718028	rs1892163	A	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	202718202	rs1892164	G	A	9136.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	202722277	rs4950742	G	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	202731986	rs140328663	C	CCTCAA	1721.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	202733238	rs3196669	C	T	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	202735751	rs12140729	T	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	202794787	rs12139944	T	C	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:49,182:0.79:231
chr1	202827126	.	C	T	317.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	202827398	rs6687459	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-1.039;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr1	202887295	rs2275734	G	A	5881.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr1	202889207	rs7520522	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	202897431	rs10800882	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	202934764	rs56932949	TC	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=6.317;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=1.804;QD=9.05;ReadPosRankSum=0.827;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	202956340	rs705754	T	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	202978032	rs1418444	C	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	202987770	rs782788	T	C	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	202987796	rs782787	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	202990110	.	CTTTT	C,CT	1282.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.57;QD=32.89;SOR=2.376;set=HC	GT:AD:AF:DP	1/2:0,24,15:0.62,0.38:39
chr1	203003870	rs782800	G	A	1580.82	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:8,63:0.89:71
chr1	203004627	rs5780134	A	AC	2584.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=31.14;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	203006243	rs782805	A	G	9281.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	203008174	rs61821060	G	C	7300.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	203008286	rs10920553	C	G	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	203012705	rs7547566	C	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	203012906	rs4950908	G	A	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	203023122	rs2291691	A	C	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:21,94:0.82:115
chr1	203023240	rs10635298	G	GGC	1030.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr1	203024767	rs3736314	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-1.732;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:96,19:0.17:115
chr1	203025209	rs11590950	G	C	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:57,148:0.72:205
chr1	203025428	rs12097602	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.123;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr1	203028711	rs4590732	C	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	203030685	rs2270543	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	203032922	rs1416262	C	T	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	203036757	rs2275354	T	C	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	203040673	rs9803710	A	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	203040740	rs11583155	T	C	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	203040816	rs2270540	G	C	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	203040922	rs2270541	G	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.596;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr1	203045413	rs11578206	G	T	9297.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:104,388:0.79:492
chr1	203045583	rs6682652	T	C	5504.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:84,226:0.73:310
chr1	203053768	rs903356	T	C	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	203055101	rs4950877	A	G	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	203098275	rs2228079	T	G	6747.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:85,289:0.77:374
chr1	203098455	rs10920569	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,39:0.81:48
chr1	203137784	rs35823777	A	ACT	6951.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	203143395	rs3737872	T	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	203148633	rs4950927	A	G	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	203152801	rs880633	T	C	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:24,64:0.73:88
chr1	203153555	rs12128727	C	T	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:12,48:0.80:60
chr1	203153634	rs2071579	C	G	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:32,148:0.82:180
chr1	203154532	rs1538372	A	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr1	203155882	rs4950928	G	C	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	203175107	rs2494296	A	C	535.78	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr1	203186093	rs1065761	G	C	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:28,75:0.73:103
chr1	203188692	rs2486958	A	C	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,67:0.69:97
chr1	203194186	rs2297950	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:17,65:0.79:82
chr1	203198596	rs72739588	G	A	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-1.682;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:196,49:0.20:245
chr1	203274618	rs55810826	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.200;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr1	203317162	rs7543148	C	T	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:19,83:0.81:102
chr1	203452226	rs2233724	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr1	203465396	rs2242199	T	C	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=2.895;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:60,28:0.32:88
chr1	203652444	rs1419114	A	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	203667409	rs2228445	T	C	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	203667577	rs139986068	TA	T	1141.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	203677250	rs3753036	G	A	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	203679934	rs2032018	A	G	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,59:0.75:79
chr1	203689936	rs4951112	C	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr1	203698627	rs2365862	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	203740615	rs3737976	T	C	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	203741368	rs3737973	C	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	203766827	rs872032	T	C	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	203787700	rs4951260	T	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	203803016	rs6694647	A	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	203821200	rs7512877	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	204006095	rs41264273	A	G	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:22,87:0.80:109
chr1	204006538	rs4951291	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	204006597	rs4951039	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	204010389	rs10437107	G	T	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	204081629	.	GCA	G	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.275;QD=1.10;ReadPosRankSum=-0.321;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:42,7:0.14:49
chr1	204081655	rs940653	A	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=29.19;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	204103618	rs2293335	G	A	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	204110334	rs10793755	A	G	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	204124865	rs2368564	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:55,19:0.26:74
chr1	204125272	rs3795574	C	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.957;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.883;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:61,22:0.27:83
chr1	204125464	.	T	TCAGACAGA	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=3.341;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.772;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr1	204125509	rs11571088	T	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.275;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr1	204129671	rs5707	A	C	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,52:0.74:70
chr1	204159611	rs71745629	CT	C	1693.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:12,50:0.81:62
chr1	204159787	rs4889	G	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:20,81:0.80:101
chr1	204172182	rs189602653	C	T	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr1	204214975	.	TAC	T	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.471;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr1	204379617	rs3014626	T	C	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	204397427	rs60317484	G	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.908;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	204400783	rs2271421	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	204403659	rs3747636	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.514;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:91,27:0.23:118
chr1	204409281	rs3014631	C	G	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	204413297	rs2292459	C	T	3486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.06;ReadPosRankSum=3.081;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:29,87:0.75:116
chr1	204413297	.	CGG	TGA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=41;NR=36;PP=2944;QD=20;SC=GGGCCTGTTTCGGAGAAAGGG;SbPval=0.65;Source=Platypus;TC=106;TCF=54;TCR=52;TR=77;WE=204413307;WS=204413287;set=Platypus	GT:AD:AF:DP	0/1:29,77:0.73:106
chr1	204413299	rs2292460	G	A	3486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.13;ReadPosRankSum=2.786;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:27,85:0.76:112
chr1	204416501	rs3827534	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=1.051;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr1	204418889	rs2999492	C	T	214.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.91;ReadPosRankSum=0.987;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	204418939	rs3014637	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr1	204426036	rs3014600	C	A	121.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.19;QD=20.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	204426052	.	A	C	61	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=3;HapScore=2;MGOF=19;MMLQ=24;MQ=60.23;NF=4;NR=1;PP=61;QD=19.1542425094;SC=ACACACACACACCAGCCGAAC;SbPval=0.53;Source=Platypus;TC=7;TCF=6;TCR=1;TR=5;WE=204426060;WS=204426042;set=Platypus	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	204426295	.	A	G	36	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=1;NR=4;PP=36;QD=14.1542425094;SC=CATCTGGACCAGAATGGGCTG;SbPval=0.19;Source=Platypus;TC=25;TCF=13;TCR=12;TR=5;WE=204426303;WS=204426285;set=Platypus	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	204429212	rs5013460	AT	TG	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	204429215	rs5013458	TA	AG	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	204429285	rs2999485	A	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	204429838	rs2271414	C	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	204433093	rs2271415	A	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr1	204433511	rs11455991	T	TC	1582.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	204434277	rs2942149	T	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	204434325	rs58247897	C	CCT	204.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.996;MLEAC=1;MLEAF=0.500;MQ=61.36;MQRankSum=6.302;QD=3.79;ReadPosRankSum=-1.963;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr1	204434326	rs17847779	A	G	213.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.235;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.996;MLEAC=1;MLEAF=0.500;MQ=61.36;MQRankSum=6.302;QD=3.96;ReadPosRankSum=-1.673;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr1	204436066	rs16853773	G	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,20:0.26:76
chr1	204438334	rs1124777	C	T	4616.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	204438643	rs1553921	G	T	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	204494756	.	G	GT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.364;QD=0.93;ReadPosRankSum=-0.356;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:103,25:0.20:128
chr1	204495595	rs200388119	G	GT	180.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=-0.937;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	204495634	rs4252679	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	204499880	rs61749329	A	T	2375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=0.451;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:28,104:0.79:132
chr1	204501383	rs4252697	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.157;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:216,32:0.13:248
chr1	204506107	rs4245738	C	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	204506174	.	CT	C	42	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=5;HapScore=2;MGOF=8;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=42;QD=23.0;SC=GCCATACACTCTTTTCCTTTT;SbPval=0.61;Source=Platypus;TC=15;TCF=4;TCR=11;TR=3;WE=204506182;WS=204506164;set=Platypus	GT:AD:AF:DP	1/0:12,3:0.20:15
chr1	204512100	rs4252717	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	204515863	rs2290855	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	204516025	rs2290854	A	G	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	204518842	rs4245739	C	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	204587047	rs11588857	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:47,13:0.22:60
chr1	204587569	rs3747631	G	C	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=5.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.531;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:276,81:0.23:357
chr1	204588140	rs3747630	G	A	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.779;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:159,52:0.25:211
chr1	204588926	rs35463653	C	T	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:15,64:0.81:79
chr1	204589101	rs3789044	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.952;SOR=1.239;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr1	204915393	rs2595960	A	G	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	204921258	rs12141283	A	G	6420.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	204931137	rs16854813	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-2.727;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:106,17:0.14:123
chr1	204943285	rs2595945	A	T	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	204943947	rs2246662	C	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.513;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr1	204943991	rs2246661	C	T	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.035;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr1	204943991	.	CA	TG	175	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=3;HapScore=2;MGOF=10;MMLQ=28;MQ=60.0;NF=6;NR=11;PP=175;QD=13.4392867566;SC=TGGAGAGGGACAAGGAGGCCA;SbPval=0.43;Source=Platypus;TC=52;TCF=16;TCR=36;TR=17;WE=204944000;WS=204943981;set=Platypus	GT:AD:AF:DP	0/1:35,17:0.33:52
chr1	204943992	rs2794861	A	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	204945316	rs6656887	T	C	2116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=-1.310;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:27,91:0.77:118
chr1	204945458	rs6659514	T	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr1	204945489	rs6693024	C	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr1	204945665	rs6668275	G	A	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:91,160:0.64:251
chr1	204945678	rs58682625	A	AT	5472.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:88,158:0.64:246
chr1	204945746	rs6668366	G	C	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:45,123:0.73:168
chr1	204945934	rs6657372	A	G	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:25,139:0.85:164
chr1	204951209	rs2278796	C	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr1	204953459	rs10641235	A	ATG	198.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.76;ReadPosRankSum=0.157;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	204954993	rs2278795	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	204955319	rs11240324	G	A	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.98;ReadPosRankSum=0.245;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr1	204955329	rs11240325	A	G	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.70;ReadPosRankSum=0.804;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:11,37:0.77:48
chr1	204966690	rs2794858	G	A	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	204966749	rs2595944	A	G	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	204978442	rs5780258	T	TCTG	2700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=0.670;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:370,91:0.20:461
chr1	204978533	rs1530745	A	G	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.182;QD=1.71;ReadPosRankSum=-0.499;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:355,75:0.17:430
chr1	205028883	rs35182846	CAG	C	1923.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:12,48:0.80:60
chr1	205034262	.	G	A	1937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DP=816;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=1.111;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:654,160:0.20:814
chr1	205034852	rs143128501	A	ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC	1257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=14.362;MLEAC=1;MLEAF=0.500;MQ=62.32;MQRankSum=2.268;QD=44.92;ReadPosRankSum=0.576;SOR=4.514;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	205041063	rs201687043	C	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.886;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:53,27:0.34:80
chr1	205041158	rs2229868	C	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:24,90:0.79:114
chr1	205052939	rs4950979	G	A	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:18,95:0.84:113
chr1	205053219	rs4951168	C	T	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:37,126:0.77:163
chr1	205069404	rs11240356	G	A	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:42,131:0.76:173
chr1	205091105	rs12033568	G	C	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:17,70:0.80:87
chr1	205116635	rs11367	A	T	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-1.200;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:23,73:0.76:96
chr1	205119981	rs3851295	C	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr1	205119998	.	G	A	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=0.639;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:18,42:0.70:60
chr1	205130413	rs3851294	A	G	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	205225480	rs61733639	G	C	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:14,50:0.78:64
chr1	205240913	rs9659978	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	205272926	rs1106201	C	T	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	205272983	rs1106202	C	G	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	205274174	rs10793728	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	205275206	rs4951195	AG	TT	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	205275421	rs4951197	A	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	205312280	rs7549293	C	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr1	205312767	rs7526603	G	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,36:0.86:42
chr1	205325458	rs2298251	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr1	205385498	rs6688045	C	T	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	205492756	rs7529442	A	G	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	205495392	rs2297837	A	G	6319.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	205495976	rs1544154	A	G	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	205498021	rs7531230	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	205498326	.	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr1	205499577	rs6668356	C	G	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	205499660	rs41264895	C	T	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	205500543	rs11240507	T	C	7306.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	205554085	rs7526132	G	C	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-2.012;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:192,49:0.20:241
chr1	205554095	rs7515820	A	C	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=0.626;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:182,42:0.19:224
chr1	205561495	rs143503253	TC	T	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=0.432;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	205561511	rs6593956	T	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.69;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	205568213	rs2282449	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.050;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:99,25:0.20:124
chr1	205568390	rs2282450	T	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-1.680;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chr1	205568438	rs2282451	G	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=1.108;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr1	205568442	rs2282452	G	A	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr1	205600653	rs6593957	C	T	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	205615791	rs6673283	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-2.096;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:181,28:0.13:209
chr1	205615947	rs4951250	C	A	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,47:0.82:57
chr1	205630893	rs3761916	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.120;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chr1	205686523	rs34305872	G	GT	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.560;QD=10.93;ReadPosRankSum=0.894;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr1	205687348	rs71709139	CTTTTTTCTTT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.436;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	205689807	rs823094	T	G	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr1	205696671	rs1772147	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	205697138	rs77732109	G	A	109.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	205739396	rs823139	T	G	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-0.167;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:20,73:0.78:93
chr1	205740829	rs150275500	T	TC	35.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	205744138	rs708725	G	T	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:34,126:0.79:160
chr1	205764433	rs56052552	A	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.626;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr1	205764640	rs823156	G	A	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.472;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=1.239;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:14,68:0.83:82
chr1	205766159	rs5780304	CA	C	3039.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:35,98:0.74:133
chr1	205767885	rs708727	G	A	4938.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:62,210:0.77:272
chr1	205801872	rs1361754	A	G	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	205809642	rs10900525	G	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	205810947	rs11240573	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.391;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr1	205812912	rs7518979	A	G	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.177;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:92,23:0.20:115
chr1	205814497	rs1891460	T	C	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	205814695	rs71633564	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.336;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:81,30:0.27:111
chr1	205819039	rs11540016	C	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-1.602;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:145,30:0.17:175
chr1	205819104	rs11540014	G	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=1.610;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:107,29:0.21:136
chr1	205886381	rs11240591	C	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=1.351;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:140,37:0.21:177
chr1	205888143	rs11240593	G	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:57,17:0.23:74
chr1	205890679	rs12759719	T	C	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	205896293	rs73082393	T	G	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.045;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr1	205896475	rs7366204	C	T	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	205896948	rs3811424	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	205901788	rs3811423	G	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	205902242	rs41305064	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr1	206327510	rs61742539	T	C	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,61:0.73:84
chr1	206328647	rs28694519	G	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr1	206328803	rs41302235	T	C	3998.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:53,172:0.76:225
chr1	206516159	rs199928990	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.95;MQRankSum=1.006;QD=9.76;ReadPosRankSum=-1.217;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	206516261	rs201036189	C	T	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.29;MQRankSum=1.368;QD=9.48;ReadPosRankSum=-0.205;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:62,51:0.45:113
chr1	206566860	rs11361942	TA	T	1381.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:46,89:0.66:135
chr1	206566904	rs2919105	T	C	4922.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:140,209:0.60:349
chr1	206567100	rs2480377	C	T	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:206,100:0.33:306
chr1	206567165	rs2480376	T	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr1	206579936	rs201644221	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.34;MQRankSum=0.288;QD=4.14;ReadPosRankSum=-1.769;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	206623685	rs12725078	G	T	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	206623866	rs11809494	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	206626607	rs11120575	G	A	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	206626779	rs2483059	A	G	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	206626828	rs2483058	C	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	206631518	rs10864212	G	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	206631532	rs12565311	T	A	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	206646427	rs1930437	C	A	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	206647742	rs1539242	A	G	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	206647787	rs1539243	T	C	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	206648378	rs1059704	G	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	206665896	rs2336940	C	G	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	206667441	rs2184030	G	A	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	206670827	rs12754274	G	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	206680983	rs2095124	A	C	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	206758077	rs4418597	T	A	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	206766825	rs144194477	CGA	C	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	206766857	.	C	CGTGTGTGT	393.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.20;QD=35.79;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	206769047	rs11584983	T	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	206772753	rs4845116	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	206773659	rs6662929	A	G	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	206776200	rs6668054	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	206776203	rs6675741	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.22;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	206778642	rs4077413	A	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	206904644	rs368231892	CGT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.343;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:46,7:0.13:53
chr1	206942244	rs45611331	C	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr1	206943351	rs3024494	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	206944233	rs1554286	A	G	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	206944645	rs1518111	T	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	206944861	rs1518110	A	C	506.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.034;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=0.000;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr1	207009910	rs2243170	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	207014472	rs2243188	A	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-2.856;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr1	207015957	rs2243191	T	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.441;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr1	207016125	rs1798	C	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	207040659	rs2232360	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.101;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr1	207087053	rs72758947	A	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr1	207091138	.	AT	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=2.264;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	207111257	rs291095	G	T	163.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	207195779	rs2842726	A	G	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	207237233	.	GGT	G	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=0.750;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr1	207243851	rs923109	A	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	207245080	rs35425352	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=2.932;SOR=0.085;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	207262980	rs12711513	T	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=1.139;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:80,20:0.20:100
chr1	207263829	rs6690037	A	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.218;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr1	207268779	rs7542292	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.215;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr1	207288897	rs12031629	T	C	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	207297484	rs2842707	G	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.281;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr1	207297680	rs1126618	T	C	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	207300259	rs2491393	A	G	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:23,75:0.77:98
chr1	207304900	rs4844573	T	C	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:46,120:0.72:166
chr1	207495754	.	C	G	2702.77	.	AC=1;AF=0.500;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	0/1:43,123:0.74:166
chr1	207500293	rs4844591	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr1	207504669	rs2184476	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr1	207510289	rs2490257	T	C	10395.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	207510548	rs10746462	A	G	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:15,81:0.84:96
chr1	207510596	rs10746463	G	A	3954.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:49,162:0.77:211
chr1	207512577	rs10641442	T	TTAA	721.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	207532861	rs56253023	C	CTTT	1242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.50;ReadPosRankSum=0.924;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,48:0.68:71
chr1	207643949	rs10863322	G	A	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	207653178	rs12032512	C	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.906;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=2.120;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr1	207653395	rs17617	C	A	7620.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	207679307	rs4844600	A	G	8013.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	207760773	rs3737002	C	T	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.14;ReadPosRankSum=0.448;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:20,91:0.82:111
chr1	207782916	rs4844609	A	T	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	207784968	rs3818361	A	G	8574.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	207795320	rs2296160	A	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	207818719	rs11118237	G	A	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-1.177;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr1	207850560	rs67422482	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	207850589	rs34451130	A	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	207851611	rs2296158	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.196;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:218,39:0.15:257
chr1	207857158	rs12411037	T	C	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=0.074;QD=2.99;ReadPosRankSum=-0.014;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:176,48:0.21:224
chr1	207888739	rs7553211	G	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,75:0.61:122
chr1	207888760	rs2796261	C	T	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr1	207890866	rs2796257	T	C	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-9.574;QD=2.87;ReadPosRankSum=0.160;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:329,94:0.22:423
chr1	207941191	rs2724374	G	T	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	207956559	rs1962149	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	207959122	.	CTTTT	C,CTTT	254.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=28;set=Intersection	GT:AF:DP	1/2:0.24,0.65:17
chr1	207959136	.	T	TAAA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.000;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	207992546	rs12123251	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:56,19:0.25:75
chr1	208041168	rs77679645	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.814;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:117,32:0.21:149
chr1	208050301	rs17009221	A	G	3602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.92;ReadPosRankSum=-0.491;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:42,159:0.79:201
chr1	208050360	rs17009223	G	A	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:24,122:0.84:146
chr1	208062471	rs2073070	A	C	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:30,105:0.78:135
chr1	208063100	rs5780411	G	GA,GAA	1625.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.14;MQRankSum=0.898;QD=19.59;ReadPosRankSum=0.334;SOR=0.575;set=HC	GT:AD:AF:DP	1/2:6,53,24:0.64,0.29:83
chr1	208200737	rs659192	C	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr1	208204794	rs76190764	CTGTT	C	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-0.277;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr1	208207839	rs3736963	G	A	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:28,88:0.76:116
chr1	208208034	rs12128144	G	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr1	208208124	rs6540448	C	A	348.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr1	208211887	rs905100	T	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	208212397	rs2767566	A	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	208213125	rs1751580	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr1	208219164	rs1536471	A	C	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr1	208225909	rs841865	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.728;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr1	208252489	rs2274445	T	C	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr1	208255877	rs6540453	T	C	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	208276399	rs10654695	C	CCTCT	5557.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	208390155	rs4844657	C	T	11182.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	208390162	rs4844658	T	C	10936.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	209605636	rs3842530	TAGCAGCAGCAGC	T	6366.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	209778737	rs2235455	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	209778771	rs35508847	G	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=1.575;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr1	209779126	rs11119313	C	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.863;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=-0.832;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	209779652	rs35498535	T	G	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-2.311;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:150,37:0.20:187
chr1	209781125	rs760833	T	C	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=2.058;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:306,74:0.19:380
chr1	209782343	rs11119314	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-1.359;SOR=1.362;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr1	209784927	rs2076230	G	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:68,23:0.25:91
chr1	209785011	rs2076226	G	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.361;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=10.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.506;SOR=2.569;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr1	209785206	rs11119315	G	A	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.378;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:320,91:0.22:411
chr1	209785957	rs2272879	T	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	209786078	rs2272880	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-2.066;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr1	209788703	rs1049607	T	C	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.905;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:89,41:0.32:130
chr1	209792015	rs5780528	A	AC	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.313;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr1	209799253	rs2179402	A	G	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	209804095	rs4844863	G	A	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	209807972	rs1130667	G	A	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	209811886	rs2076356	T	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	209812063	rs2076357	T	C	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	209849002	rs3817870	T	C	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:22,93:0.81:115
chr1	209849399	rs3830766	AG	A	1666.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,41:0.87:47
chr1	209849406	rs1473683	T	G	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,41:0.87:47
chr1	209880216	rs72215241	C	CA	3705.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:55,135:0.71:190
chr1	209880259	rs12086634	T	G	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:73,164:0.69:237
chr1	209880508	rs58182526	GA	G	486.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.209;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.818;QD=10.14;ReadPosRankSum=-0.362;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr1	209905734	rs932335	G	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr1	209933331	rs6685077	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr1	209933540	rs2076150	A	G	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:29,94:0.76:123
chr1	209933757	rs6696463	G	C	2443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=1.182;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:24,107:0.82:131
chr1	209935778	rs10489342	A	G	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:20,62:0.76:82
chr1	209936466	rs7548219	A	G	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:22,103:0.82:125
chr1	209936571	rs6540555	A	G	906.96	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:4,38:0.90:42
chr1	209936631	rs6540556	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr1	209936914	rs17015169	C	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:40,106:0.73:146
chr1	209936964	rs34406510	T	TCA	2256.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr1	209950681	rs649275	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=1.558;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:42,9:0.18:51
chr1	209952865	rs623360	C	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr1	210001586	rs616227	A	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr1	210004199	rs585627	C	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=1.235;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:76,27:0.26:103
chr1	210006603	rs656566	C	T	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-1.408;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:141,38:0.21:179
chr1	210008367	rs685248	C	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.425;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.017;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr1	210008673	rs686582	T	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.414;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:65,13:0.17:78
chr1	210012102	rs1962735	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	210015568	rs10570454	GCT	G	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.620;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:51,8:0.14:59
chr1	210111733	rs12025114	G	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	210125948	rs200902462	CTT	C	927.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr1	210139222	.	CT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.57;ReadPosRankSum=0.187;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	210194565	rs71515148	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.680;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:102,20:0.16:122
chr1	210406940	rs624270	T	C	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr1	210407031	rs624706	G	T	3240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.95;ReadPosRankSum=-0.697;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:31,140:0.82:171
chr1	210407329	rs36086035	GT	G	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.89;ReadPosRankSum=1.067;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	210407339	rs34824193	T	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.979;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	210414871	rs67121079	G	GT	314.90	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	210536078	rs2294848	C	G	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:32,78:0.71:110
chr1	210577873	rs2066721	G	C	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	210577901	rs34228541	T	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.404;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr1	210591742	rs3215542	TG	T	3270.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;MQ=60.47;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	210761462	rs4297293	G	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	210804430	rs4951682	G	A	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-2.628;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:124,30:0.19:154
chr1	211276828	rs3762452	C	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr1	211280724	rs199641326	TAA	T,TA	4576.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=3.196;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;MQRankSum=0.235;QD=20.80;ReadPosRankSum=-0.052;SOR=0.326;set=HC	GT:AD:AF:DP	1/2:8,143,69:0.65,0.31:220
chr1	211380500	rs12072778	G	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr1	211380578	rs61737773	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:11,48:0.81:59
chr1	211380770	rs7525401	T	C	4686.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:65,207:0.76:272
chr1	211433420	rs9887769	T	A	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.253;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:87,22:0.20:109
chr1	211447435	rs5780634	CT	C	185.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	211447625	rs11580084	G	A	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:15,89:0.86:104
chr1	211452529	rs10708960	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=2.334;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	211452678	rs3767377	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr1	211452728	rs3767378	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr1	211465056	rs67923485	ACATAGGC	A	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-3.298;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	211527609	rs7530570	C	A	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	211544608	rs2289758	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.090;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	211545442	rs10717294	CT	C	144.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-0.427;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr1	211652755	rs11119749	T	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr1	211836789	rs12031285	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.719;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr1	211846876	rs701929	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=4.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=1.482;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:134,23:0.15:157
chr1	212141784	rs150857619	C	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.865;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr1	212142054	rs11322485	GA	G	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.938;QD=7.55;ReadPosRankSum=0.302;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr1	212209367	rs3215984	T	TC	1092.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	212217971	rs35704923	C	CTT	1258.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	212220847	rs2970592	G	A	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	212236157	rs4951436	G	T	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	212241714	rs201294353	TA	T	1322.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.888;QD=14.54;ReadPosRankSum=1.152;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:8,83:0.91:91
chr1	212250820	rs17656453	T	C	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	212251103	rs6658972	A	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	212251367	rs5780675	GT	G	972.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.400;QD=17.07;ReadPosRankSum=-0.065;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:6,51:0.89:57
chr1	212273639	rs3135474	C	T	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr1	212273892	rs142342808	G	A	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:26,117:0.82:143
chr1	212274413	rs6540718	A	C	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	212459470	rs140143936	G	C	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:13,85:0.87:98
chr1	212475634	rs12743785	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	212521639	rs701908	T	G	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	212526288	rs792442	C	T	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	212530192	rs792439	T	C	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	212551139	rs71573837	G	GCA	1818.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	212560327	rs792449	A	G	4977.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	212791288	rs3839030	CGT	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.67;ReadPosRankSum=-1.394;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	212798977	rs3122712	A	G	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.877;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:113,29:0.20:142
chr1	212799870	rs3122713	A	G	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	212799949	rs3795842	C	T	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	212870410	rs2233924	G	A	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:46,136:0.75:182
chr1	212873181	rs113665144	C	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	212900434	rs3835160	C	CG	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	212900487	rs2244935	A	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	212911836	rs15702	T	C	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	212912108	rs67229635	ATT	A	542.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=23.60;ReadPosRankSum=-1.097;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:5,18:0.78:23
chr1	212939491	rs10863991	C	A	76.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	212955454	rs11120026	G	A	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:19,76:0.80:95
chr1	212969842	rs11421046	C	CT	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.43;ReadPosRankSum=0.778;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	212970375	rs1284800	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	212985466	rs12130945	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	213009178	rs369495200	CA	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.507;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr1	213009469	rs10864004	A	G	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	213031709	rs2201603	C	T	221.96	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	213031948	rs11120047	G	C	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:19,91:0.83:110
chr1	213032568	rs12023052	T	A	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr1	213036924	rs3086478	C	CAAAA	678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.803;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.000;QD=25.14;ReadPosRankSum=-2.062;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr1	213056819	rs2644547	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	213056892	rs12125982	A	G	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr1	213058852	rs7536716	T	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	213062017	rs112024320	T	TTTG	1234.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr1	213068192	rs2792558	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.66;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	213068233	rs12408694	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr1	213068595	rs3207090	C	T	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:45,137:0.75:182
chr1	213124871	rs3123305	G	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	213139748	rs3738805	T	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	213140362	rs10779597	G	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	213140398	rs10779598	A	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	213146876	.	G	C	1260.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr1	213146944	rs7511930	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	213173457	rs3738806	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	213178340	rs11120076	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	213180441	rs71147054	G	GA	175.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-1.012;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	213224719	rs4951476	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	213405414	rs11271079	GGCAACTGAGGAT	G	2249.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	214478459	rs6540819	G	A	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=8.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-3.336;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:109,43:0.28:152
chr1	214491536	rs55760458	G	C	1371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.53;ReadPosRankSum=-0.222;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:18,65:0.78:83
chr1	214492106	rs34932055	C	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-2.030;SOR=1.874;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr1	214492286	rs1134647	G	A	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	214497861	rs6695148	G	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr1	214500907	rs17022608	A	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:19,86:0.82:105
chr1	214503489	rs2291830	T	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-1.075;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:189,51:0.21:240
chr1	214504604	rs2270704	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	214505596	rs1874804	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.756;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr1	214542668	rs3002311	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	214542819	rs1135352	T	C	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	214543098	rs3738425	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	214551276	rs3013451	G	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	214558228	rs3013446	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	214564340	rs7550799	T	C	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	214564442	rs11120307	C	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.482;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr1	214566845	rs7355212	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	214566952	rs4655342	A	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	214567013	rs11322819	CG	C	2262.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	214638172	rs10864100	C	T	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	214791895	rs76226363	T	C	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:66,134:0.67:200
chr1	214792669	.	TTG	T	37	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=4;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=37;QD=24.0;SC=GCTGGCCTTTTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=2;WE=214792678;WS=214792659;set=Platypus	GT:AD:AF:DP	1/0:14,2:0.12:16
chr1	214806072	rs146826898	GAAGT	G	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.427;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	214811244	rs2070065	C	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:85,29:0.25:114
chr1	214813487	rs2070066	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:33,10:0.23:43
chr1	214813782	rs3795524	A	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.128;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr1	214813941	rs3795523	C	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.131;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:220,44:0.17:264
chr1	214814125	rs3795522	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.737;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.125;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:123,26:0.17:149
chr1	214814582	rs3795520	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.976;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr1	214814778	rs3795518	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.334;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr1	214814995	rs12067133	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.694;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:102,28:0.22:130
chr1	214815916	rs3795517	T	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:96,35:0.27:131
chr1	214816142	rs3795516	T	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.430;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:96,27:0.22:123
chr1	214816224	rs2666839	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.161;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:137,30:0.18:167
chr1	214816297	rs3795514	A	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.807;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:112,23:0.17:135
chr1	214816715	rs17023338	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.643;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:77,12:0.13:89
chr1	214818215	rs3748692	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-1.087;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:98,21:0.18:119
chr1	214818223	rs3748693	T	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.377;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:102,17:0.14:119
chr1	214818846	rs3790646	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.454;QD=1.74;ReadPosRankSum=-0.838;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:194,42:0.18:236
chr1	214818945	rs3790647	A	C	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.703;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:118,36:0.23:154
chr1	214819328	rs3748695	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.035;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:95,17:0.15:112
chr1	214819980	rs3748696	C	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,29:0.31:95
chr1	214820299	rs3748698	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:114,44:0.28:158
chr1	214820494	rs3790648	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.853;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:140,34:0.20:174
chr1	214820524	rs3790649	T	C	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-1.755;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:144,40:0.22:184
chr1	214821699	.	TA	T	40	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=3;HapScore=2;MGOF=9;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=40;QD=33.0;SC=TACTGCCTGATAATGATAATC;SbPval=1.0;Source=Platypus;TC=6;TCF=5;TCR=1;TR=2;WE=214821707;WS=214821689;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr1	214821959	rs11120372	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.362;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:66,18:0.21:84
chr1	214825289	rs71679696	CT	C	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.293;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr1	214826196	rs335524	G	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	214826364	rs335523	G	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	214826810	.	CTT	C,CT	2272.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=0.765;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.879;QD=12.35;ReadPosRankSum=0.202;SOR=0.592;set=HC	GT:AD:AF:DP	1/2:28,38,118:0.21,0.64:184
chr1	214828812	rs435043	A	G	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	214830617	rs438034	A	G	6283.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	214837110	rs7289	C	G	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	215256537	.	TC	T	124	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=10;HapScore=4;MGOF=22;MMLQ=24;MQ=58.47;NF=0;NR=4;PP=124;QD=34.5;SC=CTTCTCACGCTCCCCCCCCCG;SbPval=0.02;Source=Platypus;TC=11;TCF=7;TCR=4;TR=4;WE=215256555;WS=215256527;set=Platypus	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	215256547	.	G	C	181	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=14;HapScore=4;MGOF=22;MMLQ=29;MQ=58.59;NF=6;NR=0;PP=181;QD=35.9618687579;SC=TCCCCCCCCCGCCCCCTCCCG;SbPval=1.0;Source=Platypus;TC=12;TCF=8;TCR=4;TR=6;WE=215256555;WS=215256527;set=Platypus	GT:AD:AF:DP	1/0:6,6:0.50:12
chr1	215260152	rs11586565	A	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr1	215345263	rs3834061	GTCTCTC	G	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=1.155;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr1	215368514	rs1556907	A	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr1	215793834	rs14137	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	215848587	rs2797234	T	C	9674.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	215848641	rs2797235	T	C	10018.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr1	215853748	rs5780842	GT	G	1338.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:6,74:0.93:80
chr1	215916728	.	ATG	A	778.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.45;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	215916732	rs4053764	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr1	215916758	.	G	A	116	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=2;MGOF=46;MMLQ=27;MQ=60.0;NF=2;NR=6;PP=116;QD=18.8464015684;SC=GTGTGTGTGTGTATATATATA;SbPval=0.26;Source=Platypus;TC=32;TCF=4;TCR=28;TR=8;WE=215916766;WS=215916748;set=Platypus	GT:AD:AF:DP	1/0:24,8:0.25:32
chr1	215931922	.	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.812;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	216051287	rs7518358	A	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.439;QD=1.23;ReadPosRankSum=0.194;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:135,28:0.17:163
chr1	216172380	rs10864219	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chr1	216219781	rs6657250	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.191;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:102,18:0.15:120
chr1	216246675	rs35944387	AG	A	2195.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	216348764	rs1805049	C	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:16,59:0.79:75
chr1	216370108	rs447102	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.536;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.745;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr1	216370130	rs386851	T	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	216371934	rs646094	A	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr1	216373476	.	G	GA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-2.044;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr1	216390694	rs1324330	C	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:14,65:0.82:79
chr1	216405383	.	G	T	1660.77	.	AC=1;AF=0.500;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	0/1:71,85:0.54:156
chr1	216495191	rs7515253	T	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.532;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.362;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr1	216495400	rs2089947	A	G	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.173;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr1	216496947	rs1805050	G	A	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=4.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-2.140;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:195,41:0.17:236
chr1	216500830	rs1339963	G	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.245;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.185;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	216592003	rs4253963	T	C	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	216595306	rs10779261	C	T	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	216679858	rs144848582	A	AT	448.74	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr1	216737861	rs11117622	G	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	216824505	rs10863261	C	G	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	217671771	rs724803	C	G	1629.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.40;ReadPosRankSum=-1.795;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:10,74:0.88:84
chr1	217783810	rs12749938	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	217804325	rs944730	G	A	8258.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:102,358:0.78:460
chr1	217804635	rs34121469	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr1	217804955	rs10495062	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	217856787	rs71301099	A	AT	519.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	217947738	rs6604561	G	A	4452.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	218036237	rs6658846	T	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	218458551	rs946213	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	218458557	rs3831934	AG	A	128.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	218475533	rs2251169	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	218610662	rs11285412	CT	C	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=0.599;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	219366400	rs35359058	T	TG	246.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.89;QD=24.67;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	219383848	rs5781096	A	ACTTTTT	1296.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	219383867	rs940571	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	219383905	rs940570	A	G	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	219706327	rs2785986	A	G	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:45,125:0.74:170
chr1	219706428	rs10746385	T	C	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=1.275;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:329,92:0.22:421
chr1	219783279	rs79789352	T	A	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:135,119:0.47:254
chr1	220142023	rs1061248	C	T	469.85	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr1	220142070	rs1061242	C	T	742.03	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:3,31:0.91:34
chr1	220145371	rs2795315	T	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	220145584	rs1982986	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr1	220145655	rs1982984	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr1	220151808	rs3215088	C	CAA	1428.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr1	220153332	rs34917248	T	TAA	3074.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	220154246	rs35193743	AT	A	712.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:3,42:0.93:45
chr1	220154659	rs10595099	TAAA	T	3220.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=11.866;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.299;QD=31.58;ReadPosRankSum=1.657;SOR=2.246;set=HC	GT:AD:AF:DP	1/1:4,98:0.96:102
chr1	220154768	rs1061160	C	T	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=2.563;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.414;QD=3.94;ReadPosRankSum=-1.379;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:278,96:0.26:374
chr1	220156090	rs2647462	T	C	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	220156427	rs1391566	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr1	220160360	rs2647435	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.349;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.133;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr1	220160433	rs2647434	A	G	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	220161859	rs2291838	C	G	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,46:0.75:61
chr1	220162195	rs2254494	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:53,19:0.26:72
chr1	220178717	rs5781162	T	TA	968.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	220184150	rs34170326	CA	C	493.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,28:0.90:31
chr1	220184164	rs28570471	A	G	1596.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=36.29;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	220191932	rs35962858	G	GA	110.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.253;QD=11.01;ReadPosRankSum=-0.493;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	220192192	rs34320023	TA	T	316.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.692;QD=13.77;ReadPosRankSum=2.083;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr1	220192495	rs2245457	C	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	220197545	rs2577159	C	T	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	220197625	rs2230301	G	T	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	220205943	rs2789816	G	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	220205980	rs2577138	A	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	220207017	rs2647456	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	220208154	rs2789817	C	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	220239448	rs1146773	T	C	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	220284318	.	A	G	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.37;ReadPosRankSum=1.771;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:14,64:0.82:78
chr1	220321023	rs11095	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=2.434;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:83,19:0.19:102
chr1	220326514	rs200579008	G	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr1	220335430	rs2164790	A	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	220355433	rs11343960	CT	C	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr1	220362857	rs35162828	AT	A	161.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-0.903;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	220369745	rs35396665	TA	T	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.338;QD=3.50;ReadPosRankSum=2.603;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr1	220375728	rs76473498	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr1	220406291	rs10863538	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr1	220603310	rs10553491	TGTGA	T	1028.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr1	220607685	rs1361256	G	A	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	220607891	rs1338767	A	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	220789236	rs2786599	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	220789362	rs12137627	T	A	471.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=1.937;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr1	220808666	rs372845559	CTT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.97;ReadPosRankSum=1.415;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	220808921	rs10746403	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	220824115	rs12123306	G	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.659;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:112,27:0.19:139
chr1	220825523	rs3737296	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	220960188	rs72470571	G	C	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	220960457	rs79575000	A	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	220960576	rs72470443	C	G	211.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-0.471;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	220960603	rs72470444	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=1.691;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	220964798	rs953970	T	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr1	220965086	rs3738177	G	C	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:22,73:0.77:95
chr1	220965099	rs12026877	T	C	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr1	220970028	rs2642438	A	G	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	220986516	rs12144830	C	G,T	782.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/2:0.71,0.29:28
chr1	220986546	rs17650107	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.610;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.650;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr1	221053545	rs12141189	T	C	1697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=3.462;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:358,113:0.24:471
chr1	221054761	rs17597773	C	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr1	221055463	rs2247213	G	A	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:31,159:0.84:190
chr1	221057646	rs2738755	C	T	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:29,84:0.74:113
chr1	221057662	rs3738182	G	A	3071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.43;ReadPosRankSum=-1.416;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:30,82:0.73:112
chr1	221507141	rs7555947	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	221509335	rs72746037	A	C	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:24,70:0.74:94
chr1	221912361	rs1141714	T	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	221912808	rs1136448	T	C	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	222721288	rs4846382	C	T	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	222732027	rs76003336	T	C	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=0.596;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:19,47:0.71:66
chr1	222734803	rs1134898	G	C	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	222737265	rs35877231	G	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	222737568	rs3008640	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	222742676	rs4846766	T	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	222751034	rs2936033	T	C	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	222798106	rs3008617	G	A	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	222802006	rs2936053	A	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	222802803	rs3748626	T	G	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	222802926	rs3008620	C	T	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	222821211	rs61824282	C	T	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	222823529	rs17465637	A	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	222823743	rs67180937	T	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	222825403	rs3002150	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	222825717	rs10495198	T	C	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	222825761	rs2936019	G	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	222826481	rs2291832	G	A	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	222832010	rs35822937	A	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr1	222832295	rs2291834	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	222833601	rs3002153	T	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	222837594	rs2270707	G	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	222838216	rs2936026	C	T	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	222846882	rs12138316	G	A	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	222860734	rs3008638	C	T	124.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	222886119	rs3811465	A	G	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	222919895	rs2378607	T	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	222923001	rs2068814	A	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	222923351	rs6683071	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	223152868	rs1815607	G	A	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	223156280	rs10626845	C	CTT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.53;ReadPosRankSum=-0.674;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	223156382	rs2926159	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	223168213	rs2609359	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	223177574	rs2609355	A	G	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	223283910	rs7512943	A	G	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	223284528	rs5744174	A	G	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:26,114:0.81:140
chr1	223285200	rs5744168	G	A	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:38,98:0.72:136
chr1	223285833	rs45528236	G	T	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:49,149:0.75:198
chr1	223286191	rs5744165	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.792;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=7.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.441;SOR=1.777;set=HC	GT:AD:AF:DP	0/1:84,17:0.17:101
chr1	223402443	rs72743891	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=-0.287;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr1	223532326	rs17539887	C	T	511.81	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr1	223715248	rs36108579	GT	G	1431.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr1	223716349	rs4072246	G	A	2691.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:25,109:0.81:134
chr1	223717379	rs61823524	A	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	223717484	rs34158997	G	A	1996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.50;ReadPosRankSum=2.197;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:31,90:0.74:121
chr1	223718462	rs61823525	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	223718518	rs61823552	C	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr1	223718651	rs61823553	G	A	2797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.78;ReadPosRankSum=0.553;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:26,123:0.83:149
chr1	223718670	rs61823554	G	A	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:31,125:0.80:156
chr1	223718764	rs35808016	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.963;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr1	223722646	rs34630115	T	TA	234.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	223722780	rs34606532	G	A	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:37,103:0.74:140
chr1	223728083	rs202073012	A	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	223799857	rs34786756	C	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	223799871	rs35116708	C	T	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	223807239	rs34693465	C	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,16:0.26:62
chr1	223807262	rs34900680	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr1	223810318	rs61825177	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	223813586	rs35539373	G	T	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:17,86:0.83:103
chr1	223814671	rs61825208	A	T	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr1	223814682	rs67990281	A	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr1	223815575	rs34187970	G	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	223816322	rs66602040	A	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	223816347	rs61825210	A	G	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	223830566	rs11584107	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.185;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:228,48:0.17:276
chr1	223841836	rs2105405	C	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr1	223841877	rs2105406	C	G	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr1	223841913	rs11585533	C	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.162;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:105,26:0.20:131
chr1	223900408	rs25655	C	G	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	223905532	rs17596	G	A	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	223931648	rs1222137	T	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	223934720	rs17600	G	A	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	223938565	rs1153968	A	C	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.715;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:27,75:0.74:102
chr1	223954080	rs17599	A	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr1	223985963	rs61824007	C	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:36,52:0.59:88
chr1	223991959	rs61749337	G	A	5206.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:61,230:0.79:291
chr1	224301749	rs6690695	C	T	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	224302154	rs3066024	T	TGAG	5489.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	224318151	rs3065998	T	TTTG	2792.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	224321984	rs1472167	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	224345012	rs7543762	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	224444628	rs10799556	C	T	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	224444901	rs2897055	G	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	224468986	rs34156240	C	CGTGT	218.75	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=61.53;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	224482084	rs34631151	C	T	1862.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.44;ReadPosRankSum=1.088;SOR=0.483;set=HC	GT:AD:AF:DP	1/1:5,78:0.94:83
chr1	224482216	rs2404783	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	224492381	rs7522125	C	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	224492746	rs3754090	C	T	12272.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr1	224495852	rs7534447	C	T	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	224500881	.	A	G	63	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=21;HapScore=2;MGOF=18;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=63;QD=24.4428031368;SC=AAAAAAAAAAAACAAGCAAAT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=224500889;WS=224500871;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	224505570	rs3066969	T	TAA	2922.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	224505719	rs4436353	T	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	224514275	rs4653578	G	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	224517842	rs2896990	C	T	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	224517907	rs4146965	A	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	224585958	rs7522956	A	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	224588825	rs7518109	T	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	224600910	rs10916612	C	A	1838.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.181;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.36;ReadPosRankSum=-0.526;SOR=0.408;set=HC	GT:AD:AF:DP	1/1:1,51:0.98:52
chr1	224600920	rs10916613	C	A	1861.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.263;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.13;ReadPosRankSum=-0.431;SOR=0.467;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr1	224606249	rs10495219	C	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	224621368	rs2405033	G	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	224868596	rs7525096	A	C	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:39,156:0.80:195
chr1	224872443	rs3738364	A	G	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:26,86:0.77:112
chr1	224872473	rs3738363	A	G	2362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=-0.887;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:33,106:0.76:139
chr1	224926997	.	CTTT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.37;ReadPosRankSum=0.652;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	224927217	rs3738362	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr1	225230608	rs2501107	C	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	225237850	rs2501086	A	C	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	225266966	rs3105559	C	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	225268343	rs3128651	A	G	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	225268346	rs3128652	G	A	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	225270409	rs3128655	A	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	225270424	rs201015646	A	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr1	225273248	rs3128658	G	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	225273633	rs3105565	T	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	225477491	rs12024361	C	T	268.53	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	225477546	rs12042076	A	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr1	225477793	rs12042900	T	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr1	225555512	rs11578981	C	T	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	225555602	rs12737248	T	G	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	225562385	rs10915816	C	T	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	225565015	rs3856154	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	225565073	rs3856155	C	T	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	225569241	rs950210	T	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	225576058	rs6679430	T	C	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	225576311	rs10753405	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	225577648	rs12134158	C	T	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	225601647	rs3766928	C	T	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	225603103	rs6702433	C	T	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	225607144	rs2230419	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	225609884	rs1056608	A	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	225611661	rs1056607	C	T	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	225611845	rs1340867	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:42,13:0.24:55
chr1	225685621	rs145776060	TAAG	T	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	225705445	rs72753031	G	A	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:27,98:0.78:125
chr1	225707271	rs34432111	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.159;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr1	225965832	rs1461957	G	T	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:20,65:0.76:85
chr1	226016381	rs41266229	G	A	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr1	226016397	rs41266231	G	A	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:9,42:0.82:51
chr1	226019774	rs2260863	G	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,41:0.87:47
chr1	226026616	rs2292567	G	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=8.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=1.018;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:141,31:0.18:172
chr1	226027067	rs35708670	G	GGT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=-0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.99;ReadPosRankSum=0.873;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	226044489	rs60955535	G	GC	969.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	226048744	rs34700682	CA	C	2064.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	226054681	rs360085	T	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	226074563	rs360057	T	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	226075410	rs57114136	GC	G	3781.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	226076919	rs360058	G	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	226125543	rs60825997	G	GA	739.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	226127629	rs199979438	C	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	226180816	rs61170616	C	CT	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.401;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.861;QD=6.91;ReadPosRankSum=-0.548;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	226252232	rs2036870	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	226253316	rs1849032	G	T	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	226334578	rs1219666	G	A	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	226334605	rs41303309	T	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.324;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=0.469;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr1	226352498	rs2306120	T	G	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:56,141:0.72:197
chr1	226411317	rs10915962	C	T	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	226438449	rs6678137	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	226474132	rs10799347	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	226485327	rs11390947	A	AT	915.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	226488826	rs11577454	A	G	590.82	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,28:0.88:32
chr1	226549885	rs368063214	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.420;QD=2.55;ReadPosRankSum=-0.217;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	226550924	rs747657	G	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	226553485	rs118165556	A	C	412.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=41.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	226553486	rs146042055	C	A	457.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=45.78;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	226553490	rs34917861	C	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.38;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	226553494	rs11378196	C	CA	492.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.85;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	226556094	rs1805400	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	226566726	rs907190	A	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	226567172	rs2271345	A	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.315;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:70,14:0.17:84
chr1	226570840	rs1805415	T	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	226789564	rs55767921	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr1	226827300	rs56308606	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.679;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:115,34:0.23:149
chr1	226836590	rs2298169	A	G	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:29,80:0.73:109
chr1	226923505	rs708776	G	T	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	226923938	rs6667260	A	C	4830.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:56,197:0.78:253
chr1	226924642	rs3754415	C	T	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:55,208:0.79:263
chr1	227069677	rs11405	T	C	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	227069737	rs6759	C	T	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	227071364	rs1295643	G	A	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	227071377	rs1295644	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	227071525	rs1046240	C	T	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	227073410	rs2236910	G	C	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	227078955	rs2802267	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	227079222	rs2236915	C	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.91;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	227081622	rs10753428	A	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	227081850	rs2855562	G	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	227085155	rs11802358	G	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	227085394	rs114893547	A	G	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.360;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.460;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:369,88:0.19:457
chr1	227165097	rs3806263	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.219;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr1	227171735	.	TG	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.406;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr1	227171958	rs7530213	G	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.365;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.529;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr1	227172518	rs1317490	C	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr1	227174122	rs41303131	C	G	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:19,78:0.80:97
chr1	227174145	rs7552783	T	C	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:34,124:0.78:158
chr1	227174210	rs3738725	T	C	7828.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:72,345:0.83:417
chr1	227182033	rs2802269	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.493;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr1	227182575	rs1045247	A	G	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	227210769	rs150575063	CA	C	435.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	227218069	rs5781458	C	CAT	427.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	227221251	rs12031609	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.343;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr1	227222515	rs113874316	G	GACAA	7835.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	227227740	rs12026688	A	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr1	227239746	rs10799381	G	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	227246890	rs59693176	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.922;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	227279717	.	G	GA	360.73	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr1	227300277	rs488104	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.555;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-2.106;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr1	227330759	rs12139502	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	227330783	rs58442036	G	C	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:22,80:0.78:102
chr1	227335329	rs6685954	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.142;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.431;SOR=0.092;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr1	227348349	rs3754419	A	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.189;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr1	227381326	rs6696485	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	227381364	rs150257854	A	AT	745.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr1	227381373	rs3768436	G	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	227381674	rs35780410	TA	T	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.368;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr1	227387143	rs3768435	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	227387361	rs3768434	A	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	227834228	rs79145640	AT	A	832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.328;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:220,68:0.24:288
chr1	227920061	rs1060295	T	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.043;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=19.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.340;SOR=0.019;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr1	227920447	rs751748	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.075;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.204;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr1	227922918	rs2295994	A	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.808;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=5.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-1.998;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:219,44:0.17:263
chr1	227923081	rs7419238	G	A	9611.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	227935280	rs2236361	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr1	227935355	rs2236360	T	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.316;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:129,50:0.28:179
chr1	227935444	rs2236359	A	G	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.630;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:208,52:0.20:260
chr1	227963491	rs754224	G	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr1	227968107	rs10799448	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.272;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr1	228003839	rs79840641	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.788;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:89,24:0.21:113
chr1	228003967	rs12121588	G	A	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:34,85:0.71:119
chr1	228033197	rs9426581	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,32:0.32:100
chr1	228033333	rs16848162	T	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.215;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.230;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:140,29:0.17:169
chr1	228112121	rs4653889	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:15,71:0.83:86
chr1	228113163	rs3795768	A	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	228129197	rs631768	T	C	922.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.97;ReadPosRankSum=-0.073;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:4,40:0.91:44
chr1	228290051	rs145743393	T	G	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.222;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:206,69:0.25:275
chr1	228334418	rs3216021	GAT	G	1378.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,34:0.89:38
chr1	228334436	rs55873533	G	A	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:6,38:0.86:44
chr1	228352160	rs4348717	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	228362682	rs2298014	G	A	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:35,131:0.79:166
chr1	228391808	rs11800309	G	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.039;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr1	228399766	rs55971985	T	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.196;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:101,31:0.23:132
chr1	228400646	rs3121192	T	C	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.668;QD=7.36;ReadPosRankSum=-2.420;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:91,32:0.26:123
chr1	228400653	rs3121191	A	T	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.477;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.822;QD=7.40;ReadPosRankSum=-0.280;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr1	228402047	rs1620111	A	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.847;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:279,46:0.14:325
chr1	228402508	rs2776853	C	T	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:27,76:0.74:103
chr1	228404668	rs3795777	T	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr1	228405118	rs5781507	G	GA	206.80	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	228412106	rs1771482	T	C	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr1	228412227	rs1771480	TG	CA	5660.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;JOINED;set=Intersection	GT:AD:AF:DP	0/1:28,136:0.83:164
chr1	228412308	rs1757152	G	A	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:34,109:0.76:143
chr1	228431095	rs1771455	A	G	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	228431235	rs11584385	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	228431930	rs10916293	C	T	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	228432987	rs1757129	G	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr1	228433217	rs2487384	A	G	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	228434395	rs7517088	T	C	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	228434467	rs7517108	T	C	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	228437603	rs6426494	T	C	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	228438045	rs12737540	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.509;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr1	228444297	rs7532141	T	G	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:22,106:0.83:128
chr1	228444318	rs7532144	T	G	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	228444565	rs7532342	T	A	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	228444741	rs3795780	C	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	228447513	rs7525075	T	G	3388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.53;ReadPosRankSum=1.489;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:26,85:0.77:111
chr1	228447519	rs7525078	T	A	3366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.47;ReadPosRankSum=2.573;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:26,81:0.76:107
chr1	228451826	rs453140	C	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=3.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.492;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:173,37:0.18:210
chr1	228456147	rs878388	T	C	7224.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	228461129	rs1188724	A	G	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	228461408	rs11398292	A	AG	2558.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	228461757	rs474735	G	A	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:43,136:0.76:179
chr1	228463433	rs510931	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	228464100	rs936884	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr1	228464248	rs1188721	T	G	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	228464276	rs1188722	T	C	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	228464842	rs936885	C	G	7204.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr1	228465346	rs493945	A	G	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:54,110:0.67:164
chr1	228465370	rs867599	T	G	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	228466750	rs3795782	T	C	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr1	228468458	rs1188697	G	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.491;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr1	228470995	rs1150906	G	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr1	228471046	rs41303079	C	T	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr1	228471379	rs56168609	G	C	3354.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:48,139:0.74:187
chr1	228475848	rs437129	G	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.825;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:313,78:0.20:391
chr1	228480282	rs1150908	A	G	7716.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	228480964	rs10158357	A	G	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:9,67:0.88:76
chr1	228482010	rs449133	C	T	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.307;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:299,68:0.19:367
chr1	228482028	rs4653547	G	C	7861.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:70,311:0.82:381
chr1	228482285	rs1150909	T	C	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	228484744	rs72759967	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	228486404	rs56021350	C	T	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:82,151:0.65:233
chr1	228492044	rs1150910	G	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=1.473;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:325,77:0.19:402
chr1	228494357	rs3795795	C	T	6294.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:40,177:0.82:217
chr1	228494382	rs1150911	T	G,C	5974.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=157;set=Intersection	GT:AF:DP	1/2:0.20,0.80:156
chr1	228494438	rs3795797	C	T	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr1	228494696	rs4653939	G	A	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:23,81:0.78:104
chr1	228494790	rs435776	G	A	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=13.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.463;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:127,30:0.19:157
chr1	228495696	rs419173	T	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	228496014	rs876180	G	A	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:28,84:0.75:112
chr1	228497053	rs379620	A	G	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	228503677	rs1150912	A	G	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	228504472	rs1188732	T	C	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	228504591	rs61825301	C	A	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:37,118:0.76:155
chr1	228504669	rs61825302	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,48:0.76:63
chr1	228504670	rs11810627	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr1	228504701	rs111792077	G	GCTCC	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	228505204	rs4653942	G	A	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:27,122:0.82:149
chr1	228505668	rs1188729	C	G	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	228505699	rs1188728	T	C	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	228505739	rs3795801	G	A	4106.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:61,179:0.75:240
chr1	228506661	rs41305126	G	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:30,72:0.71:102
chr1	228509427	rs373610	A	G	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	228520763	rs384553	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr1	228522029	rs57891072	TA	T	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	228522047	rs520552	A	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr1	228523442	rs1684868	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-0.975;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:74,15:0.17:89
chr1	228523447	rs10799473	T	C	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	228523448	rs1757161	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.381;SOR=1.436;set=HC	GT:AD:AF:DP	0/1:81,15:0.16:96
chr1	228523618	rs1757160	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr1	228524919	rs3795807	G	A	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=2.377;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:192,51:0.21:243
chr1	228524961	rs3795808	C	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-1.665;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:226,69:0.23:295
chr1	228525008	rs3795809	G	A	4951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-0.543;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:75,228:0.75:303
chr1	228525627	rs1757127	C	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-1.606;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:151,40:0.21:191
chr1	228525898	rs1188717	C	G	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=4.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.665;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr1	228526011	rs11577699	C	T	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:41,148:0.78:189
chr1	228526486	rs58480216	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.092;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr1	228526665	rs505629	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.755;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr1	228526742	.	C	CCACACA	117.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.62;ReadPosRankSum=-0.674;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	228528412	rs1150916	G	A	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.113;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:170,64:0.27:234
chr1	228528563	rs1188710	C	G	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.004;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:163,40:0.20:203
chr1	228538711	.	G	A	526.77	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:69,31:0.31:100
chr1	228539300	rs3795812	G	A	153.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	228559654	rs111616349	G	A	8755.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:83,371:0.82:454
chr1	228560139	rs498382	A	G	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr1	228560700	rs512253	T	C	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:49,124:0.72:173
chr1	228560864	.	G	A	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.407;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.254;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:123,31:0.20:154
chr1	228601638	rs472594	T	C	5326.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:89,226:0.72:315
chr1	228612838	rs2230656	G	T	8565.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr1	228613052	rs1188474	T	C	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	228645063	rs10916317	A	G	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.58;SOR=1.925;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	228646356	.	C	CGTGT	771.73	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr1	228681749	rs3795817	C	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	228699477	rs6665115	T	C	1685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.418;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:376,118:0.24:494
chr1	228785805	rs10916348	C	T	372.31	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	229407233	rs7519709	G	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	229422088	rs237763	A	G	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	229422193	rs237764	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	229438530	rs72183342	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.535;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	229438828	rs237787	G	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	229461024	rs2282083	C	T	3668.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:43,162:0.79:205
chr1	229567660	rs201427429	C	CG	2467.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:30,63:0.68:93
chr1	229567663	rs6673359	C	G	2476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=-2.941;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:30,64:0.68:94
chr1	229567683	rs59228224	TC	T	1555.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr1	229568231	rs527621	T	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	229568243	.	C	CGGCGGG	240.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	229568632	rs11803533	A	G	12363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.89;ReadPosRankSum=-0.015;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:119,309:0.72:428
chr1	229568637	rs41271481	C	G	12266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=2.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.42;ReadPosRankSum=-1.080;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:116,301:0.72:417
chr1	229568934	rs57214022	AG	A	1649.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr1	229580593	rs67514588	C	CA	278.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr1	229596260	rs1328219	A	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr1	229599225	rs7525324	T	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr1	229600336	rs2904	A	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr1	229602284	rs7555749	C	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr1	229622162	rs1065675	A	G	6319.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:87,275:0.76:362
chr1	229623131	rs6678721	G	C	1581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.912;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.42;ReadPosRankSum=0.184;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr1	229623137	rs4925493	T	C	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.79;ReadPosRankSum=-0.336;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:15,42:0.74:57
chr1	229623338	rs1065674	T	C	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:33,112:0.77:145
chr1	229623409	rs10653575	A	ATTTG	1344.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr1	229631193	rs3818237	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	229631734	rs11805194	T	C	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.524;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,70:0.71:98
chr1	229635521	rs10916495	A	G	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:30,160:0.84:190
chr1	229636388	rs6673421	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	229637645	rs754022	C	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:15,53:0.78:68
chr1	229637881	rs2381108	T	G	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:34,97:0.74:131
chr1	229663064	rs113712941	GAGGAA	G	3363.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	229683264	rs3738187	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr1	229693846	rs4148757	A	C	99.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	229738236	rs4925500	G	A	2741.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:22,112:0.84:134
chr1	229750036	rs7547607	C	T	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:48,127:0.73:175
chr1	229783236	rs6587349	T	C	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:12,88:0.88:100
chr1	230371883	rs3811488	G	A	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:16,64:0.80:80
chr1	230384937	rs3748006	T	C	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:11,53:0.83:64
chr1	230386174	rs2273965	C	T	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.97;ReadPosRankSum=1.217;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:8,41:0.84:49
chr1	230415025	rs6698963	A	G	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:25,107:0.81:132
chr1	230415148	rs2273970	G	A	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,57:0.74:77
chr1	230451935	rs144363709	C	CAT	1360.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	230451978	rs11122492	G	A	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=25.93;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	230459433	rs35048134	GC	G	986.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	230473103	rs10864744	A	C	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	230497940	rs828479	G	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-1.054;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:101,24:0.19:125
chr1	230498232	rs2820384	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr1	230503684	rs2632571	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:37,11:0.23:48
chr1	230513128	rs828463	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	230778491	rs4846864	G	C	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:14,60:0.81:74
chr1	230795177	rs1359866	T	C	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr1	230819479	rs5781597	G	GT	439.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,24:0.89:27
chr1	230820763	rs150768186	C	CACATT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.968;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.350;QD=4.16;ReadPosRankSum=1.000;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:42,7:0.14:49
chr1	230820780	rs3215851	TA	T	1371.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chr1	230822607	rs1536591	G	A	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	230822903	rs2493147	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	230825942	rs3000064	A	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr1	230828987	rs2478534	C	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.424;QD=1.17;ReadPosRankSum=-0.302;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:117,23:0.16:140
chr1	230841687	rs7080	T	C	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:39,117:0.75:156
chr1	230883484	rs6690251	T	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.124;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:102,24:0.19:126
chr1	230883499	rs6690254	T	C	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.182;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr1	230895340	rs28359608	C	A	795.78	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,34:0.89:38
chr1	230903234	rs11122590	A	G	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	230910485	.	CTT	C	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.458;QD=15.06;ReadPosRankSum=-1.289;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	230914729	rs1933631	A	C	1199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=1.739;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:12,53:0.82:65
chr1	230975454	rs1202550	A	G	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	230979657	rs41314280	G	A	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:20,66:0.77:86
chr1	231003851	rs11122619	G	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	231047310	rs10580953	TAC	T	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr1	231047392	rs2153049	G	A	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	231057247	rs2275333	A	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr1	231057287	rs9432260	A	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.319;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	231057310	rs2275334	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=1.860;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	231064578	rs5781609	T	TCTC	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	231069340	rs12749386	C	T	510.88	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr1	231069652	rs1890351	A	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.960;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr1	231076422	rs138770929	G	A	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	231092180	rs11122161	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr1	231092211	rs34436246	T	TG	1403.74	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:5,44:0.90:49
chr1	231093785	rs59207624	CT	C	778.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr1	231094050	rs60736833	GA	G	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.124;MLEAC=1;MLEAF=0.500;MQ=60.85;MQRankSum=2.545;QD=6.57;ReadPosRankSum=-0.516;SOR=1.357;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr1	231114465	rs76376323	C	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,37:0.74:50
chr1	231114595	rs11122174	C	T	798.81	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr1	231124055	rs10779804	T	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr1	231161773	rs12569337	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.977;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	231175644	rs12025055	C	G	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	231298699	rs112692510	T	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=4.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.403;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:152,43:0.22:195
chr1	231353589	rs4658907	A	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-2.731;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr1	231362923	rs491182	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:85,34:0.29:119
chr1	231376806	rs2274067	G	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=6.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.880;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:146,30:0.17:176
chr1	231377081	rs518686	C	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.144;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:176,42:0.19:218
chr1	231400905	rs849714	A	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.320;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.268;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	231401204	rs6702011	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.123;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr1	231401596	rs532226	T	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.428;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr1	231401902	rs574553	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:69,24:0.26:93
chr1	231471268	rs35468792	AT	A	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr1	231697030	rs1982095	G	A	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	231830295	rs3738401	G	A	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	231936016	rs2759354	A	G	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	231954872	rs11588937	C	T	239.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.96;ReadPosRankSum=3.618;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	231956086	rs11122343	A	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr1	232172374	rs17773715	G	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr1	232534957	rs12043251	T	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:33,88:0.73:121
chr1	232535030	rs629939	C	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	232538234	rs17177525	T	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr1	232539412	rs2275304	T	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr1	232539811	rs2275306	T	A	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.91;ReadPosRankSum=-0.298;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:15,57:0.79:72
chr1	232551416	rs12569188	G	A	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.323;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=8.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-1.669;SOR=1.373;set=HC	GT:AD:AF:DP	0/1:125,40:0.24:165
chr1	232564297	rs3210731	T	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.391;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr1	232568293	rs1547741	A	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	232577281	rs573140	T	G	303.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	232597919	rs78044234	C	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.742;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:155,30:0.16:185
chr1	232649877	rs143013457	G	A	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:36,159:0.82:195
chr1	232650750	rs3795366	A	G	7116.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	232650867	rs4649383	C	T	11375.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	232940953	rs10797593	T	C	2904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=0.011;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:39,123:0.76:162
chr1	232941153	rs12409898	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:55,18:0.25:73
chr1	232941215	rs41271527	A	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr1	232941677	rs3766497	G	T	4109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=0.034;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:50,178:0.78:228
chr1	232942251	rs12048236	A	G	7283.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:82,307:0.79:389
chr1	233137225	rs140788891	CATAA	C	1777.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	233296891	rs2296515	T	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	233296908	rs2296516	T	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	233336044	rs12024129	T	A	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr1	233353951	rs56159240	A	G	201.56	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	233353992	.	CTTTTT	C	388	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=18;HapScore=2;MGOF=92;MMLQ=23;MQ=57.25;NF=0;NR=7;PP=388;QD=55.8571428571;SC=TAAGTTTTGCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=12;TCF=1;TCR=11;TR=7;WE=233354004;WS=233353982;set=Platypus	GT:AD:AF:DP	1/0:5,7:0.58:12
chr1	233362930	rs701176	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:31,66:0.68:97
chr1	233395214	rs2139998	T	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	233489499	rs7539016	A	G	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=0.693;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr1	233489529	rs7549137	G	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	233489707	rs7551511	G	T	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.50;ReadPosRankSum=0.011;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:26,82:0.76:108
chr1	233490536	rs137943316	A	AATGTCTTGGGGATAATCTG	3970.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:22,79:0.78:101
chr1	233490543	rs2049182	G	A	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:27,104:0.79:131
chr1	233490764	rs4649219	G	T	1724.78	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:8,68:0.89:76
chr1	233490776	rs4649220	C	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:6,50:0.89:56
chr1	233511913	rs35806537	TAGAG	T	700.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr1	233515413	rs1402815	G	A	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	233749896	rs140745317	C	CTTGGCTTTGGCT	1152.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	233759864	rs12092901	C	T	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.24;ReadPosRankSum=1.468;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:12,59:0.83:71
chr1	233759918	rs701213	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr1	233785786	rs4649241	A	C	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:19,86:0.82:105
chr1	234442376	rs674385	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	234444761	rs369159455	T	TAAA	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.10;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	234458668	rs35870005	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	234509259	rs10910420	G	C	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.078;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:85,26:0.23:111
chr1	234510262	rs4300255	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.019;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr1	234528006	rs3754317	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.113;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr1	234529519	rs1802871	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.262;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:94,16:0.15:110
chr1	234529540	rs1134756	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.668;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:101,14:0.12:115
chr1	234529552	rs2175594	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.021;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:94,12:0.11:106
chr1	234529570	rs2175593	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-0.628;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:84,10:0.11:94
chr1	234541622	rs2271444	G	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,21:0.27:77
chr1	234546343	.	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.454;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr1	234561394	rs199988220	ATAATT	A	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:39,9:0.19:48
chr1	234563060	rs443685	T	C	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=2.514;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:13,47:0.78:60
chr1	234563556	rs10910434	T	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:26,5:0.16:31
chr1	234564864	rs71701823	GAA	G	494.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr1	234565078	rs4027042	G	GAA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.553;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:105,26:0.20:131
chr1	234566085	rs2236587	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.141;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:115,22:0.16:137
chr1	234569113	rs181374845	C	T	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:18,70:0.80:88
chr1	234569192	rs3754311	T	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=1.409;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:165,44:0.21:209
chr1	234573171	rs2273873	A	C	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-1.542;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:172,40:0.19:212
chr1	234582457	rs270527	C	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr1	234584446	rs270526	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	234596202	rs270511	T	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.561;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.615;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr1	234601456	.	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.388;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	234603205	rs16843273	C	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.166;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:52,25:0.32:77
chr1	234603322	rs60079444	A	T	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.015;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr1	234606799	rs6694349	C	T	236.96	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	234606998	rs3754307	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=1.550;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr1	234607055	rs10713847	TG	T	750.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr1	234607086	rs6687548	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	234607104	rs6697027	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	234608725	rs34245359	A	ATT	61.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	234744250	rs8722	G	A	4545.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:34,191:0.85:225
chr1	234744413	rs4636	C	A	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:16,75:0.82:91
chr1	234744480	rs11502	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr1	234745009	rs7545855	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	234953834	rs200007946	A	C	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.00;QD=20.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	234953875	rs138215498	C	CA	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.28;QD=25.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	235275367	rs145333621	G	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	235285740	rs4659823	C	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr1	235316185	rs11351017	CT	C	59.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.44;ReadPosRankSum=-0.365;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	235357303	rs34768226	A	ATG	1347.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr1	235357314	rs35180803	AT	A	1255.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr1	235357543	rs10802438	A	G	741.28	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:3,29:0.91:32
chr1	235383188	rs4659654	A	G	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr1	235392546	rs12731746	T	C	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:20,111:0.85:131
chr1	235394541	rs7518225	A	C	145.79	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	235397937	rs35818300	GCA	G	301.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	235490391	rs3840452	CA	C	348.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	235505313	rs3841735	A	AT	1632.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:23,77:0.77:100
chr1	235543262	rs11425048	C	CA	144.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.05;ReadPosRankSum=-0.670;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	235543476	rs145735844	TTGTGTGTGTGTGTGTG	T,TTG	1749.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.979;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.323;QD=38.88;ReadPosRankSum=0.963;SOR=0.982;set=HC	GT:AD:AF:DP	1/2:1,11,33:0.24,0.73:45
chr1	235564924	rs17543709	G	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.685;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr1	235594182	rs2291687	A	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	235594250	rs2291688	A	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	235598973	rs2055127	C	T	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	235601958	rs3819974	G	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	235647631	rs291387	G	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr1	235652513	rs291396	T	C	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=4.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-2.706;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:256,70:0.21:326
chr1	235715523	rs14326	A	G	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:15,70:0.82:85
chr1	235715556	rs423026	C	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:7,46:0.87:53
chr1	235715601	rs400948	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr1	235747005	rs2774335	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr1	235747154	rs2774336	A	G	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:23,107:0.82:130
chr1	235826382	rs36014994	TA	T	406.74	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,24:0.89:27
chr1	235827443	rs3819013	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	235827641	rs12092604	C	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	235856901	rs3754232	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	235860340	rs7541057	C	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	235878431	rs376528653	AGTT	A	608.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr1	235887276	rs6667717	G	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	235896726	rs6429275	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	235910392	rs6676149	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	235910542	rs3754234	C	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	235918688	rs149138177	CAAAAG	C	2326.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=43.90;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	235922228	rs3738519	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr1	235940450	rs2273584	C	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	235945186	rs72763416	G	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr1	235945294	rs6696123	T	C	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	235952124	.	G	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.623;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr1	235955150	rs11583387	G	A	4016.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:41,172:0.81:213
chr1	235963454	rs72763422	C	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	235971763	rs3768066	A	G	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:21,90:0.81:111
chr1	235972435	rs3820553	T	C	7779.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	235972867	rs1063128	T	C	8351.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	236141174	rs3213190	T	C	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr1	236142253	rs12032474	T	G	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:11,109:0.91:120
chr1	236142565	rs1536132	T	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.70;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	236142570	rs3738524	C	G	820.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.46;ReadPosRankSum=0.827;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:4,31:0.89:35
chr1	236143302	rs3831989	C	CA	1705.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:21,87:0.81:108
chr1	236144754	rs3820558	C	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	236144951	rs3738525	A	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:17,67:0.80:84
chr1	236145145	rs715956	T	C	721.53	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:4,28:0.88:32
chr1	236154057	rs139359390	AGGACTACAT	A	1692.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:3,42:0.93:45
chr1	236154365	rs4660137	G	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:15,49:0.77:64
chr1	236157277	rs16833075	T	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:19,70:0.79:89
chr1	236187413	rs143743775	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr1	236193145	rs2273586	G	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.671;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr1	236381825	rs1055851	G	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=2.449;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	236381897	rs1615601	T	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.958;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=7.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.902;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	236381917	rs1614938	T	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	236384022	rs34880815	A	ATTT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.550;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:12,2:0.14:14
chr1	236385116	rs2463190	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.091;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr1	236385165	rs2463189	G	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.858;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=1.069;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr1	236385360	rs2477587	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.933;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr1	236388346	rs3768092	G	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.388;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:265,58:0.18:323
chr1	236393654	rs2812471	A	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	236395979	rs11388266	C	CT	246.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.401;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	236413230	rs2477599	T	A	2076.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.43;ReadPosRankSum=1.333;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:4,81:0.95:85
chr1	236416923	rs10082203	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	236433135	rs3834089	AT	A	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	236557771	rs966365	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.895;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:101,26:0.20:127
chr1	236557928	rs966364	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr1	236572389	rs659901	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	236572475	rs669710	A	G	1283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=-0.477;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:13,58:0.82:71
chr1	236577761	rs625444	TC	CT	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.691;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=2.431;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	236590497	rs1759388	C	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	236590563	rs1778861	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	236590629	rs636378	C	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=-0.485;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:15,47:0.76:62
chr1	236590659	rs636048	G	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr1	236590816	rs635487	T	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr1	236645670	rs604070	C	T	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:39,106:0.73:145
chr1	236687504	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=4.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.576;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr1	236687782	rs3820564	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:91,41:0.31:132
chr1	236687887	rs146975800	C	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:33,8:0.20:41
chr1	236714292	.	TA	T	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.217;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr1	236721731	rs819431	T	C	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	236722182	rs819432	A	T	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	236729956	rs653737	T	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	236740102	rs375239299	G	A	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.665;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:85,27:0.24:112
chr1	236881196	rs193922634	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.011;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.212;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:170,25:0.13:195
chr1	236882110	rs1341865	G	A	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	236882303	rs1341864	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	236883240	rs1768053	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	236883421	rs1341863	C	T	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	236883564	rs1341862	G	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	236889374	rs137881951	A	T	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,56:0.77:73
chr1	236890781	rs1768056	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	236897633	rs707203	A	G	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	236899899	rs11355106	TC	T	2433.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	236900018	rs7542508	G	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	236900597	.	G	GTATATATATATATATATATATA	260.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.42;QD=28.97;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	236900598	rs7521191	C	T	270.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=90.26;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	236902532	.	AT	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.927;QD=0.35;ReadPosRankSum=-0.708;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:81,17:0.17:98
chr1	236902560	rs7527525	C	T	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	236902594	rs2288601	C	G	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	236902865	rs2288602	A	C	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	236902955	rs7544174	T	C	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	236914610	rs3738545	G	C	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	236924506	rs2282366	A	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	236925844	rs12063382	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.480;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr1	236958496	.	T	G	125.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	236958532	rs28372871	G	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr1	236978992	rs5781924	T	TTCTG	4879.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	236988593	rs5781926	A	AT	2204.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:38,97:0.72:135
chr1	237001926	rs3820568	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	237013550	rs146375090	AT	A	1965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.76;ReadPosRankSum=-0.749;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:12,48:0.80:60
chr1	237013553	rs200399202	T	A	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.37;ReadPosRankSum=-0.935;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:12,49:0.80:61
chr1	237023333	rs10925254	T	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=26.06;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	237037998	rs150727404	CT	C	893.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=33.10;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	237038008	rs10925256	T	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.759;QD=9.64;ReadPosRankSum=-0.508;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	237048500	rs1805087	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr1	237048562	rs2275566	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	237049879	rs12065382	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr1	237054569	rs2229276	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr1	237057608	rs2297965	G	A	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	237057882	rs2297964	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.258;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.399;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr1	237058744	rs12070777	C	A	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:20,87:0.81:107
chr1	237058828	rs1131449	C	T	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	237058996	rs75739277	C	CTATT	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	237060433	rs3820571	G	T	4712.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	237061056	rs2853522	A	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	237061097	rs11799670	A	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	237063335	rs1050996	G	C	5512.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	237063504	rs9779	A	G	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:9,69:0.88:78
chr1	237433524	rs2275288	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:79,34:0.30:113
chr1	237433625	rs2275287	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.062;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:104,31:0.23:135
chr1	237516302	rs77704048	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	237540615	rs10925391	A	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=2.827;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:73,15:0.17:88
chr1	237551241	rs71561868	G	GTC	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	237551376	rs10754602	T	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,43:0.80:54
chr1	237580606	rs6673182	G	T	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=4.461;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	237580612	rs6673187	G	C	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=5.031;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	237586384	rs16835237	T	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.710;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=1.138;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:104,33:0.24:137
chr1	237617757	rs3765097	C	T	2367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=-0.746;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:30,106:0.78:136
chr1	237619875	rs5781961	A	AT	1024.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=1.818;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:49,73:0.60:122
chr1	237620049	rs2045955	T	C	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:34,101:0.75:135
chr1	237632285	rs35662567	A	AT	836.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr1	237632595	rs71561877	T	TGTG	118.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	237670140	rs2618702	A	G	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:16,70:0.81:86
chr1	237675163	rs67622164	G	A	397.53	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	237693610	rs34521733	C	CA	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-0.984;QD=5.96;ReadPosRankSum=-1.198;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:40,48:0.55:88
chr1	237693921	rs2779365	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	237711644	rs2618661	T	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	237711797	rs2253273	A	G	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr1	237714103	rs2306238	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	237730124	rs2805390	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	237730169	rs2779401	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	237732395	rs2805396	G	A	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	237753074	rs11331089	AT	A	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.630;QD=2.81;ReadPosRankSum=-0.853;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:95,35:0.27:130
chr1	237755188	rs2618713	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.838;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:140,32:0.19:172
chr1	237755203	rs2779430	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-1.025;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:123,24:0.16:147
chr1	237791424	rs190203184	T	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr1	237794603	rs1759123	A	G	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	237794986	.	T	TGAA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=1.006;QD=17.39;ReadPosRankSum=-1.006;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	237794989	.	ACG	A	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=1.006;QD=17.39;ReadPosRankSum=-1.465;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	237798414	rs75658478	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	237801770	rs707189	T	C	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	237802559	rs530109	T	C	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	237813126	rs625006	A	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	237814783	rs684923	C	T	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.420;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr1	237814898	rs2184014	C	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	237824332	rs471647	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	237831103	rs477245	C	A	268.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	237841390	rs34967813	A	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chr1	237850666	rs10679267	C	CT	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-0.017;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr1	237862164	rs1521745	G	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	237862436	rs1521744	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	237863439	rs12754190	G	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	237863718	rs2797436	T	G	3651.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.090;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.182;QD=26.46;ReadPosRankSum=0.983;SOR=0.295;set=HC	GT:AD:AF:DP	1/1:1,137:0.99:138
chr1	237865203	rs939699	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	237872714	rs35261418	GT	G	1224.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.579;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.298;QD=18.28;ReadPosRankSum=-1.033;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:3,64:0.96:67
chr1	237881770	rs2797441	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	237890437	rs2685301	C	T	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	237893674	rs2797445	C	T	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	237905568	rs35446101	T	TC	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	237923053	rs2253831	C	T	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	237946964	rs790889	T	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	237947537	.	C	T	2037.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:26,87:0.77:113
chr1	237951451	rs2256242	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	237955649	rs68129840	CTGTG	C	468.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.06;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	237955678	rs144369382	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	237955680	rs146659498	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	237955698	rs71162418	CGT	C	216.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	237957146	rs790902	G	A	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	237957161	rs790901	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	237957309	rs790900	A	C	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	237958750	rs35572672	A	AT	109.75	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	237965035	rs2790346	C	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	237965043	rs2790347	A	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	237965094	rs2794820	G	T	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	237965131	rs9428384	G	A	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	237965133	rs35563566	A	AT	625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-0.244;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:16,40:0.71:56
chr1	238045590	rs2794813	C	T	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	238048325	rs2298100	A	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	238051933	rs2236595	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-2.039;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	238053524	rs538499	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.787;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-1.327;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr1	240255203	rs12727981	G	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	240255568	rs140531536	GGGC	G	1300.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr1	240256822	rs10926124	C	A	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:46,142:0.76:188
chr1	240286773	rs3820506	C	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.68;ReadPosRankSum=-1.054;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	240351628	rs4659948	T	C	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	240370629	rs10926166	C	G	10463.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:128,457:0.78:585
chr1	240421383	rs10926181	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.719;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	240448434	rs6673167	G	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	240457973	rs7526497	G	T	383.28	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr1	240492543	rs6686353	G	A	1603.03	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:6,58:0.91:64
chr1	240497265	rs10157874	A	C	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:18,50:0.74:68
chr1	240601269	rs2356386	A	G	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	240635491	rs2210861	G	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	240643167	rs11578184	A	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=5.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.225;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	240643184	rs9442211	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.350;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr1	240643435	.	A	ACCCTTGGGAGGTGTTATCTCAAAATCCTTCTCCAAGGTGAAACCATT	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=5.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.021;SOR=2.168;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	240655330	rs9287248	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	240655560	rs11587912	C	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr1	240656797	rs11806449	G	A	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	240656840	.	TA	T	362	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=3;MGOF=19;MMLQ=23;MQ=61.0;NF=2;NR=33;PP=362;QD=11.2;SC=CAATCTTACTTATTTTTTTTT;SbPval=0.52;Source=Platypus;TC=60;TCF=3;TCR=57;TR=35;WE=240656860;WS=240656830;set=Platypus	GT:AD:AF:DP	1/1:25,35:0.58:60
chr1	240656841	rs45519645	A	T	1775.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;MQRankSum=0.453;QD=27.32;ReadPosRankSum=-0.399;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:2,63:0.97:65
chr1	240656852	.	T	TTA	382	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000,0.5000;HP=10;HapScore=3;MGOF=19;MMLQ=28;MQ=61.24;NF=1,1;NR=33,33;PP=26,382;QD=1.02941176471;SC=TTTTTTTTTTTATTTTAGACA;SbPval=0.88;Source=Platypus;TC=48;TCF=3;TCR=45;TR=34,34;WE=240656860;WS=240656830;set=Platypus	GT:AD:AF:DP	0/1:15,34:0.69:49
chr1	240656852	rs75027152	T	A,TA	2521.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=65;set=Intersection	GT:AF:DP	1/2:0.26,0.74:61
chr1	240975213	rs2275742	T	C	4871.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	240975435	rs2275744	C	T	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	240977964	rs12744536	G	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	240979803	rs3738068	G	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	241146322	rs7520707	A	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr1	241519098	rs4659599	T	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	241667244	rs4659607	G	T	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:20,83:0.81:103
chr1	241728198	rs12139441	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr1	241729687	rs140702304	AAGCTCCCTGGTCAC	A	3004.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:28,75:0.73:103
chr1	241755348	rs1053230	C	T	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:22,121:0.85:143
chr1	241761349	rs45572340	T	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr1	241767930	rs632966	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	241798631	rs3737604	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:127,52:0.29:179
chr1	241823930	rs77229246	A	G	5122.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:61,225:0.79:286
chr1	241838057	rs67170285	C	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	241838065	rs66585415	T	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.27;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	241842703	rs191578421	T	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.858;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.321;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr1	241847018	rs10802979	C	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	241875326	rs12092919	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	241907811	rs373292127	G	A	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.498;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:123,40:0.25:163
chr1	241907817	rs10802990	T	C	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	241907948	rs6703922	T	C	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	241920562	rs6663895	C	T	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	241929542	rs12095445	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	241934825	rs139942709	C	CA	330.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	241935152	rs114725032	C	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;MQ=61.07;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	241936055	rs6429310	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	241946766	rs953597	A	C	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	241951034	rs6429312	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	241951106	rs6429313	A	G	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	241951329	rs12074374	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	241954005	rs35435449	TA	T	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.483;QD=3.28;ReadPosRankSum=0.773;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:64,42:0.40:106
chr1	242015820	rs2526704	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	242020495	rs2995544	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	242023898	rs4149909	A	G	2157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.13;ReadPosRankSum=-0.325;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:24,95:0.80:119
chr1	242030151	rs735943	A	G	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:32,138:0.81:170
chr1	242042301	rs1047840	G	A	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.903;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:228,51:0.18:279
chr1	242042545	rs1776148	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	242042690	rs1418760	A	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	242045275	rs1635498	C	T	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	242048514	rs10666416	G	GTAAATAAA	750.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	242048945	rs1635488	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	242053042	rs851797	A	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	242287684	rs10926623	T	C	783.78	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:4,31:0.89:35
chr1	242511556	rs112478548	AACAAAG	A	4088.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	242612420	rs2654871	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	242687390	rs2810008	G	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:18,68:0.79:86
chr1	243299436	rs146160146	T	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.71;MQRankSum=1.372;QD=2.77;ReadPosRankSum=-1.374;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	243327520	rs1815604	A	T	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=1.032;QD=15.91;ReadPosRankSum=1.524;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr1	243332884	rs140816120	AAG	A	502.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.69;MQRankSum=1.119;QD=31.40;ReadPosRankSum=-0.868;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr1	243362331	rs2789172	C	T	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:45,87:0.66:132
chr1	243388370	rs10926973	A	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr1	243434123	.	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=5.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-1.063;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	243481431	rs2783972	A	G	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:48,91:0.65:139
chr1	243493484	rs2636324	C	T	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	243579112	rs10927011	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr1	243675542	.	T	G	78.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	244527857	rs10927214	T	C	951.78	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:5,38:0.88:43
chr1	244528127	rs9782996	T	C	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	244541689	.	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.390;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	244601152	rs3127465	C	T	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	244715966	rs35587664	G	A	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:46,162:0.78:208
chr1	244724092	rs7544794	G	A	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.387;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:233,46:0.16:279
chr1	244735858	rs10927267	A	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.864;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.307;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:91,31:0.25:122
chr1	244747051	rs6429486	G	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.016;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=0.378;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	244747150	rs6429487	G	A	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.238;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.812;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr1	244747293	rs6429488	CG	TA	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;JOINED;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr1	244747339	rs6429490	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr1	244754961	rs41269387	C	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	244773784	rs6698173	T	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	244773803	rs6698180	T	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr1	244803205	rs60280231	CTT	C	2614.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=8.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.21;ReadPosRankSum=0.667;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:16,92:0.85:108
chr1	244852819	rs35130686	C	CT	59.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.54;ReadPosRankSum=-1.068;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	244993308	rs77714147	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.331;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	245021291	rs11299108	TA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.474;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr1	245133489	rs7545078	T	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	245133539	rs7542813	A	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	245133549	rs10536649	GGC	G	1467.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	245133623	rs145835471	T	TCCTCC	4884.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	245133662	rs61844237	G	C	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	245179011	.	CAA	C,CA	1408.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=3.028;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;MQRankSum=0.889;QD=10.84;ReadPosRankSum=0.189;SOR=1.100;set=HC	GT:AD:AF:DP	1/2:25,38,67:0.29,0.52:130
chr1	245179171	rs1196365	C	T	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	245179188	rs1196366	G	T	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	245222634	rs694793	C	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	245222839	rs579269	G	T	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	245318688	rs12409851	C	T	3409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=0.472;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:41,150:0.79:191
chr1	245703819	rs7551348	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.015;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr1	245703990	rs9919234	G	T	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.011;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:175,51:0.23:226
chr1	245765800	rs7541927	T	A	1091.90	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:4,46:0.92:50
chr1	245775356	rs72079889	TTGTGTGTG	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=-0.000;DB;DP=73;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.88;ReadPosRankSum=1.242;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	245849000	rs61744485	C	T	6914.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:65,294:0.82:359
chr1	245849342	rs116705728	G	A	5788.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:62,234:0.79:296
chr1	245849993	rs61740108	C	T	1859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.078;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:521,145:0.22:666
chr1	245850095	rs871840	C	T	9027.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:113,387:0.77:500
chr1	245851304	rs6701084	A	G	8139.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	245861571	rs3205034	C	T	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr1	246021941	rs2362587	T	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.734;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.685;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:81,14:0.15:95
chr1	246027024	rs12123124	A	G	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.810;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:71,26:0.27:97
chr1	246027029	rs61830203	A	T	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=1.484;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr1	246027034	rs2153404	G	C	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	246091457	rs6669768	T	C	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	246091515	rs2275318	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	246091531	rs6669866	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	246093465	rs11295264	GA	G	2049.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.830;QD=11.99;ReadPosRankSum=0.546;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:39,132:0.77:171
chr1	246110573	rs10802300	A	G	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	246489706	rs57404221	GA	G	2007.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:8,105:0.93:113
chr1	246490438	rs3737245	T	C	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=1.577;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	246490442	rs3737246	A	G	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	246490452	rs3737247	G	A	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.25;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	246498866	rs10159376	A	C	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	246670281	rs6671418	G	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	246670297	rs201911211	CCCT	C	47.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=2.103;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	246670298	rs150603688	CCT	C	489.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	246670333	rs6426303	A	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	246670481	rs7520453	C	G	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	246704563	rs764243	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	246707816	rs3124119	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr1	246707858	rs3129568	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr1	246711789	rs3124131	T	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr1	246711816	rs5782396	GA	G	150.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:58,15:0.21:73
chr1	246712033	rs1890160	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	246714728	rs9426201	G	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	246720174	rs3120710	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	246720798	rs3124071	G	A	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	246727558	rs3120713	G	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	246755124	rs6702823	T	C	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	246929483	rs12144408	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr1	246939610	rs3838991	A	ATATT	944.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.030;QD=5.66;ReadPosRankSum=0.726;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:134,33:0.20:167
chr1	246939856	rs3795465	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.566;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr1	246939943	rs6685364	T	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.229;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:103,22:0.18:125
chr1	246940179	rs3795464	G	A	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-0.979;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr1	246940182	rs3795463	C	A	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-1.473;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr1	246943547	rs41267531	A	C	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr1	247006160	rs5021094	G	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr1	247021266	.	C	CTTCTT	297.75	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=37.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	247025531	rs55727006	C	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr1	247031237	rs2800222	C	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	247150740	rs3749427	T	C	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.277;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:164,50:0.23:214
chr1	247151035	rs2642993	T	G	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:26,125:0.83:151
chr1	247151557	rs2642992	A	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.244;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:140,45:0.24:185
chr1	247162581	rs12119510	G	A	3672.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:76,167:0.69:243
chr1	247162611	rs3749428	C	G	8581.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.42;ReadPosRankSum=0.744;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:102,211:0.67:313
chr1	247162611	.	CA	GG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=1;MGOF=23;MMLQ=22;MQ=60.0;NF=103;NR=82;PP=2944;QD=20;SC=CTTGATCCTTCAACCCCTACC;SbPval=0.47;Source=Platypus;TC=291;TCF=165;TCR=126;TR=185;WE=247162621;WS=247162601;set=Platypus	GT:AD:AF:DP	0/1:106,185:0.64:291
chr1	247162612	rs3749429	A	G	8575.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.14;ReadPosRankSum=0.951;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:104,212:0.67:316
chr1	247162613	rs3833603	AC	A	8567.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:106,211:0.67:317
chr1	247162628	rs4384270	C	T	5178.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:107,230:0.68:337
chr1	247162658	rs2642973	C	T	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:212,95:0.31:307
chr1	247202362	rs11436615	C	CT	55.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.388;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	247241850	rs41305955	G	C	3859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=1.263;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:41,163:0.80:204
chr1	247242032	rs3806269	C	T	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:19,74:0.80:93
chr1	247263973	rs35316550	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=4.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.865;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:127,25:0.16:152
chr1	247267274	rs4925692	C	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr1	247337159	rs10924931	A	G	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:23,134:0.85:157
chr1	247365430	rs10754539	A	G	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:41,135:0.77:176
chr1	247419509	rs1778540	T	C	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	247419664	rs1778541	C	T	9121.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr1	247485932	rs10924984	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	247486678	rs7540329	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	247582063	rs73136263	G	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	247582461	rs368835809	TATA	T	139.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.539;QD=8.73;ReadPosRankSum=-0.569;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	247582465	rs199523445	TA	T	157.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.000;QD=10.52;ReadPosRankSum=0.798;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	247582466	rs4998423	A	T	139.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.539;QD=8.73;ReadPosRankSum=-0.454;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	247587477	rs3806268	G	A	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=5.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.068;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:173,40:0.19:213
chr1	247587531	rs4925543	A	G	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	247597329	rs12124866	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	247597364	.	G	GAT	2450.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=84.51;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	247597365	.	G	A	1295	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=27;MQ=57.81;NF=51;NR=5;PP=1295;QD=23.7459145098;SC=CTCTGGTCAGGTGTGTTCTGA;SbPval=0.55;Source=Platypus;TC=56;TCF=51;TCR=5;TR=56;WE=247597373;WS=247597355;set=Platypus	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	247597365	.	G	GTGTTCTGAGGCCTTCTCTATTCCAGAGCTCTCTGGTCAGA	2449.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=79.02;SOR=5.486;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	247597656	rs3835304	TG	T	2277.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	247614386	rs12070953	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:37,10:0.21:47
chr1	247614407	rs12065526	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:44,13:0.23:57
chr1	247614553	rs12086048	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-1.510;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:104,42:0.29:146
chr1	247614617	rs4925663	C	T	3342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=-1.155;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:55,144:0.72:199
chr1	247614693	rs6695302	C	T	7453.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	247615261	rs35305980	GA	G	5123.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:50,155:0.76:205
chr1	247654993	rs10925061	T	C	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.589;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:172,47:0.21:219
chr1	247655275	rs12141850	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.388;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:116,35:0.23:151
chr1	247690320	rs2141543	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.432;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:143,29:0.17:172
chr1	247695427	rs34220133	C	G	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:54,204:0.79:258
chr1	247695612	rs6657127	G	A	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	247695756	rs6697472	T	C	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	247702118	rs2103336	C	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-1.407;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:111,23:0.17:134
chr1	247726822	rs142922665	CTTTT	C	1032.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-0.824;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:91,32:0.26:123
chr1	247729223	rs184317291	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr1	247751731	rs12737801	C	G	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.496;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:115,36:0.24:151
chr1	247752019	rs1151687	G	C	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	247752367	rs869111	A	G	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.044;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:162,44:0.21:206
chr1	247752650	rs35280339	AT	A	604.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr1	247768736	rs71798723	AGTGAAAAATGAATAGTTTAGG	A	614.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	247769062	rs61748963	A	G	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.370;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:434,109:0.20:543
chr1	247769592	rs1151683	C	T	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:56,155:0.73:211
chr1	247769752	rs61730407	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.478;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:97,20:0.17:117
chr1	247835352	rs1151641	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	247835674	rs28446289	G	A	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	247835908	rs28556931	T	A	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	247836008	rs28555391	G	A	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	247836207	rs28711149	T	A	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	247875608	rs6587382	C	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.333;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:202,32:0.14:234
chr1	247921100	rs1552812	T	G	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	247921352	rs1552813	C	T	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	247921717	rs10888359	C	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	247921789	rs147960387	A	AGT	204.86	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	247978087	rs10888248	G	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	247978319	rs6695283	A	G	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	247978541	rs35979231	AAGG	A	6632.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	247978996	rs10888249	A	G	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	248004614	rs6667389	G	A	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	248004687	rs10888255	C	G	7573.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	248004775	rs10888256	C	T	7580.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	248004848	rs4607924	G	C	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr1	248004877	rs10888257	C	T	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	248004884	rs1339845	T	C	6015.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	248005213	rs7522811	G	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	248020448	rs10749636	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	248020556	rs11204523	G	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	248028219	rs946696	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	248039294	rs1339847	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.384;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:193,39:0.17:232
chr1	248039713	rs3811445	A	G	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.960;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:152,36:0.19:188
chr1	248058755	rs1337876	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	248058797	rs1856248	T	G	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	248058845	rs4500353	A	C	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	248058879	rs6587387	A	T	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	248059456	rs12135078	G	A	3816.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:49,159:0.76:208
chr1	248059476	rs12139390	A	C	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:48,146:0.75:194
chr1	248059703	rs11204545	T	A	5133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.30;ReadPosRankSum=0.812;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:34,130:0.79:164
chr1	248059712	rs11204546	T	C	5032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.26;ReadPosRankSum=0.118;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:31,125:0.80:156
chr1	248059804	rs77494867	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=1.960;SOR=1.450;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr1	248059856	rs10888268	T	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	248084222	rs12048237	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.572;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr1	248084434	rs11204563	G	A	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:23,94:0.80:117
chr1	248084464	rs11204564	T	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	248085108	rs4625315	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	248085124	rs4590708	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	248085341	rs4925773	T	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr1	248112627	rs4925787	T	C	7955.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:101,340:0.77:441
chr1	248112745	rs4925788	G	T	10218.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	248112762	rs4925789	TG	CA	16447.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=48.62;QD=45.31;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	248112771	rs4925791	C	T	16792.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.11;QD=43.62;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	248112809	rs4925583	A	G	12520.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	248112836	rs4925792	A	G	12071.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:3,451:0.99:454
chr1	248112915	rs10888280	A	G	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.921;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.729;QD=2.45;ReadPosRankSum=2.138;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:318,76:0.19:394
chr1	248128929	rs6664332	G	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.227;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:236,59:0.20:295
chr1	248129240	rs4478844	G	A	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:36,109:0.75:145
chr1	248262644	rs78385124	A	G	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	248343543	rs9435919	C	T	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=1.372;QD=4.70;ReadPosRankSum=1.042;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:131,51:0.28:182
chr1	248366702	rs4916112	G	A	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=3.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-1.224;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:382,104:0.21:486
chr1	248366792	rs12562957	T	C	7830.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:90,348:0.79:438
chr1	248367415	rs4916082	C	T	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	248402758	rs6666148	C	T	6137.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	248457979	rs6667171	C	A	10717.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	248457993	rs11204625	C	G	4378.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:53,201:0.79:254
chr1	248458676	rs6678138	T	C	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	248458689	rs6674940	A	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	248458717	rs12745228	C	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	248458736	rs28409263	A	G	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:28,70:0.71:98
chr1	248458760	rs12135684	C	A	3172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=2.112;QD=25.38;ReadPosRankSum=0.595;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:36,89:0.71:125
chr1	248458875	rs11339452	CT	C	2088.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr1	248486895	rs4244184	G	T	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	248486913	rs4244185	A	G	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	248487016	rs4451579	C	T	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:16,87:0.84:103
chr1	248487638	rs7555310	A	G	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	248487768	rs7555424	A	G	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	248512064	rs28372410	T	G	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-1.289;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:161,34:0.17:195
chr1	248512094	rs28728105	C	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=6.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.084;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:209,42:0.17:251
chr1	248512498	rs28448343	A	G	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:25,124:0.83:149
chr1	248512637	rs2039824	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.429;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:104,18:0.15:122
chr1	248513023	rs28607995	G	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.686;SOR=0.190;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	248524937	.	ATGGGACTCTTCAGACAATCCAAACATCCAATGGCCAATATCACCTGGATGGCCAACCACACTGGATGGTCGGATTTCATCCTGT	A	2209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=11.709;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-8.592;QD=14.35;ReadPosRankSum=0.294;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:95,59:0.38:154
chr1	248525021	.	T	A	910	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=2;MGOF=39;MMLQ=28;MQ=48.51;NF=13;NR=31;PP=910;QD=21.4720730124;SC=TTTCATCCTGTTGGGACTCTT;SbPval=0.94;Source=Platypus;TC=111;TCF=49;TCR=62;TR=44;WE=248525029;WS=248525011;set=Platypus	GT:AD:AF:DP	1/0:67,44:0.40:111
chr1	248525053	rs28415565	A	T	2523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.785;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=6.489;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=-8.026;QD=18.83;ReadPosRankSum=-0.530;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:69,65:0.49:134
chr1	248525060	rs28491677	T	A	2906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.899;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=6.375;MLEAC=1;MLEAF=0.500;MQ=53.43;MQRankSum=-8.530;QD=21.22;ReadPosRankSum=-1.547;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:66,71:0.52:137
chr1	248525071	rs28499298	T	C	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr1	248525146	rs28482938	C	T	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:57,84:0.60:141
chr1	248525193	rs28655275	C	T	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,71:0.47:150
chr1	248525285	rs28637620	T	C	3308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=38.205;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-10.836;QD=20.55;ReadPosRankSum=-2.074;SOR=2.720;set=HC	GT:AD:AF:DP	0/1:77,84:0.52:161
chr1	248525290	rs202028348	CG	TC	3442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.358;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=51.368;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.53;MQRankSum=-10.135;QD=20.49;ReadPosRankSum=-1.488;SOR=3.208;set=HC	GT:AD:AF:DP	0/1:80,88:0.52:168
chr1	248525328	rs61248663	C	CTA	6364.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:82,153:0.65:235
chr1	248525330	rs56721857	A	G	6373.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:81,163:0.67:244
chr1	248525638	rs34079073	CA	C	2440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=4.286;QD=6.78;ReadPosRankSum=0.602;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:271,89:0.25:360
chr1	248525647	rs28405645	C	A	10541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-5.008;QD=29.95;ReadPosRankSum=-0.231;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:90,262:0.74:352
chr1	248525650	rs28602650	C	T	10564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-5.233;QD=30.71;ReadPosRankSum=0.188;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:90,254:0.74:344
chr1	248525657	rs28718027	G	A	10154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.700;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-5.697;QD=30.68;ReadPosRankSum=0.503;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:87,244:0.74:331
chr1	248525780	rs28698997	C	T	7150.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:89,289:0.76:378
chr1	248550894	rs7418152	T	G	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:33,132:0.80:165
chr1	248550970	rs7417616	A	G	4648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.68;ReadPosRankSum=-0.914;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:56,207:0.79:263
chr1	248550976	rs6587467	T	G	10655.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.83;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	248551203	rs6700947	T	C	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:28,101:0.78:129
chr1	248551560	rs954474	C	T	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:41,174:0.81:215
chr1	248551636	rs954475	T	G	4922.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:53,205:0.79:258
chr1	248551955	rs28437787	C	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	248569282	rs28667896	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=7.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.734;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr1	248569369	rs28599722	A	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=4.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.288;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:134,34:0.20:168
chr1	248570440	rs6695780	G	A	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	248604452	rs78822516	A	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.669;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=8.554;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-3.300;QD=3.64;ReadPosRankSum=-0.675;SOR=2.522;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr1	248604465	rs76925977	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=8.690;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-2.817;QD=2.70;ReadPosRankSum=-1.518;SOR=2.459;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr1	248604559	rs150497047	T	TTC	1196.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.02;QD=49.86;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	248604614	rs201226597	A	T	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.931;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.500;MQ=43.96;MQRankSum=0.090;QD=11.35;ReadPosRankSum=1.175;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:42,46:0.52:88
chr1	248604765	rs144165631	T	A	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.27;QD=28.15;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	248617095	rs78674169	A	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=9.027;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-4.893;QD=0.47;ReadPosRankSum=-2.790;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:191,11:0.05:202
chr1	248617105	rs79923326	G	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=7.257;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-4.913;QD=2.12;ReadPosRankSum=-4.732;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:181,24:0.12:205
chr1	248617111	.	G	A	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=10.705;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-5.338;QD=2.64;ReadPosRankSum=-3.959;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:174,26:0.13:200
chr1	248617119	.	T	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=12.573;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-5.644;QD=3.38;ReadPosRankSum=-2.526;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:162,27:0.14:189
chr1	248617123	rs199745092	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=12.112;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-5.732;QD=4.23;ReadPosRankSum=-1.835;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:157,28:0.15:185
chr1	248617133	rs78191942	C	T	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.732;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=12.666;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-5.250;QD=6.13;ReadPosRankSum=-0.927;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:146,35:0.19:181
chr1	248617142	rs371574584	AG	A	1157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=12.918;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-5.474;QD=7.10;ReadPosRankSum=0.387;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:125,38:0.23:163
chr1	248617150	.	T	C	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.883;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=11.100;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-5.730;QD=8.27;ReadPosRankSum=1.419;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:116,40:0.26:156
chr1	248617153	rs140089153	C	CTG	1286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.196;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=13.363;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-5.653;QD=8.36;ReadPosRankSum=2.029;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:114,40:0.26:154
chr1	248652011	rs150528589	A	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.407;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=4.402;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=-6.409;QD=0.66;ReadPosRankSum=1.625;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:196,36:0.16:232
chr1	248652023	rs139516854	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.459;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.849;MLEAC=1;MLEAF=0.500;MQ=51.98;MQRankSum=-6.047;QD=0.76;ReadPosRankSum=1.066;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:171,32:0.16:203
chr1	248652058	rs199730299	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=5.983;MLEAC=1;MLEAF=0.500;MQ=47.65;MQRankSum=-2.926;QD=2.79;ReadPosRankSum=0.371;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:96,15:0.14:111
chr1	248652061	rs200544370	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.225;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=8.458;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-2.616;QD=2.95;ReadPosRankSum=-0.032;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:91,15:0.14:106
chr1	248652071	rs199723306	G	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.324;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=9.735;MLEAC=1;MLEAF=0.500;MQ=45.59;MQRankSum=-1.739;QD=4.19;ReadPosRankSum=-2.024;SOR=0.115;set=HC	GT:AD:AF:DP	0/1:74,15:0.17:89
chr1	248685253	rs9727474	T	C	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	248722507	rs199706827	C	T	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.02;QD=25.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	248722566	rs200777722	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=36.28;MQRankSum=-1.242;QD=18.10;ReadPosRankSum=1.345;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	248722611	rs200169450	C	G	1041.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.62;MQRankSum=1.429;QD=40.07;ReadPosRankSum=1.002;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr1	248722613	rs199532952	G	A	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.544;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.579;MLEAC=1;MLEAF=0.500;MQ=40.62;MQRankSum=1.161;QD=33.61;ReadPosRankSum=-0.569;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr1	248722621	rs201345491	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=8.184;MLEAC=1;MLEAF=0.500;MQ=41.44;MQRankSum=-1.002;QD=4.71;ReadPosRankSum=-0.394;SOR=2.761;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr1	248722624	rs200919674	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=8.105;MLEAC=1;MLEAF=0.500;MQ=41.40;MQRankSum=-1.059;QD=4.58;ReadPosRankSum=-0.900;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	248722659	rs201896684	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.580;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=27.236;MLEAC=1;MLEAF=0.500;MQ=43.29;MQRankSum=-1.950;QD=3.55;ReadPosRankSum=-1.056;SOR=4.970;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr1	248722671	rs140437806	T	A	1692.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.467;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.707;MLEAC=2;MLEAF=1.000;MQ=43.36;MQRankSum=1.448;QD=26.04;ReadPosRankSum=-0.594;SOR=0.111;set=HC	GT:AD:AF:DP	1/1:3,62:0.95:65
chr1	248722722	rs199528787	T	C	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.741;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=40.581;MLEAC=1;MLEAF=0.500;MQ=43.80;MQRankSum=-3.363;QD=9.50;ReadPosRankSum=-1.018;SOR=3.603;set=HC	GT:AD:AF:DP	0/1:55,33:0.38:88
chr1	248722739	rs200935922	G	C	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=11.886;MLEAC=1;MLEAF=0.500;MQ=46.53;MQRankSum=-0.045;QD=15.09;ReadPosRankSum=1.921;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:51,45:0.47:96
chr1	248722752	.	A	G	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=8.705;MLEAC=1;MLEAF=0.500;MQ=47.76;MQRankSum=-1.293;QD=12.28;ReadPosRankSum=2.479;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr1	248722756	.	T	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=6.977;MLEAC=1;MLEAF=0.500;MQ=47.86;MQRankSum=-1.086;QD=11.45;ReadPosRankSum=1.614;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:66,31:0.32:97
chr1	248722767	.	T	C	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=5.851;MLEAC=1;MLEAF=0.500;MQ=48.12;MQRankSum=-0.901;QD=9.61;ReadPosRankSum=-0.401;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:67,27:0.29:94
chr1	248722777	rs77589892	T	A	2183.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.342;MLEAC=2;MLEAF=1.000;MQ=48.88;MQRankSum=0.954;QD=25.69;ReadPosRankSum=-1.525;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:10,75:0.88:85
chr1	248722788	.	G	T	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=7.199;MLEAC=1;MLEAF=0.500;MQ=49.21;MQRankSum=-0.308;QD=7.37;ReadPosRankSum=-5.267;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr1	248722883	rs78125102	A	G	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.23;MQRankSum=-0.038;QD=34.03;ReadPosRankSum=0.396;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,26:0.90:29
chr1	248722888	rs78981094	C	G	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.27;MQRankSum=-0.364;QD=37.49;ReadPosRankSum=1.143;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr1	248737095	rs200055265	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	248737230	rs199863869	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.21;MQRankSum=-1.542;QD=0.99;ReadPosRankSum=-0.024;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr1	248737259	rs189248971	C	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.76;QD=28.22;SOR=8.121;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	248737293	rs200427293	GC	AG	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.970;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-0.766;QD=3.23;ReadPosRankSum=-0.169;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:113,19:0.14:132
chr1	248737319	rs77940099	G	A	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=51.71;MQRankSum=0.913;QD=1.54;ReadPosRankSum=-1.126;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:180,33:0.15:213
chr1	248737329	rs75095367	C	T	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:94,160:0.63:254
chr1	248737348	rs61833442	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=3.161;QD=1.53;ReadPosRankSum=-0.248;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:268,55:0.17:323
chr1	248737454	rs79750523	A	G	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:191,228:0.54:419
chr1	248737511	rs150608839	A	G	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.021;MLEAC=1;MLEAF=0.500;MQ=51.26;MQRankSum=4.339;QD=3.61;ReadPosRankSum=3.036;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:169,50:0.23:219
chr1	248737595	rs150601708	A	G	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.711;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=15.727;MLEAC=1;MLEAF=0.500;MQ=42.57;MQRankSum=0.557;QD=6.98;ReadPosRankSum=1.062;SOR=3.846;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr1	248789454	rs1892441	G	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	248789504	rs1892442	T	C	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	248790075	rs1892443	A	G	9034.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	248801480	.	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=49.05;MQRankSum=-3.067;QD=18.98;ReadPosRankSum=-1.550;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	248801488	.	C	T	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.96;MQRankSum=-3.164;QD=32.05;ReadPosRankSum=-1.764;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	248801505	.	T	TCA	913.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.33;MQRankSum=-3.391;QD=36.55;ReadPosRankSum=-1.191;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr1	248801511	.	A	G	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.53;MQRankSum=-3.293;QD=35.40;ReadPosRankSum=-0.364;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr1	248801514	.	AC	A	1291.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr1	248801528	.	G	A	1723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=-3.062;QD=38.31;ReadPosRankSum=0.918;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:4,41:0.91:45
chr1	248801538	.	G	A	2064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.960;MLEAC=1;MLEAF=0.500;MQ=53.14;MQRankSum=-2.298;QD=40.49;ReadPosRankSum=0.267;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:2,49:0.96:51
chr1	248801542	rs372631772	A	G	2148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=53.29;MQRankSum=-2.302;QD=40.54;ReadPosRankSum=0.911;SOR=2.004;set=HC	GT:AD:AF:DP	0/1:2,51:0.96:53
chr1	248801550	rs374446105	C	T	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.500;MQ=53.50;MQRankSum=-2.309;QD=40.62;ReadPosRankSum=1.701;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,54:0.96:56
chr1	248801556	rs79649486	C	T	2484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=53.90;MQRankSum=-2.321;QD=40.08;ReadPosRankSum=1.853;SOR=1.812;set=HC	GT:AD:AF:DP	0/1:2,60:0.97:62
chr1	248801566	rs74154510	T	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.02;QD=45.24;SOR=1.678;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	248801592	rs78622116	C	T	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr1	248801602	.	T	TCA	3517.73	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr1	248801610	rs150878651	G	A	3346.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.468;MLEAC=2;MLEAF=1.000;MQ=51.96;MQRankSum=1.267;QD=41.83;ReadPosRankSum=0.975;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,79:0.99:80
chr1	248801610	.	GC	AT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=3;HapScore=1;MGOF=115;MMLQ=24;MQ=42.51;NF=48;NR=31;PP=2947;QD=20;SC=GATCACAGTCGCCACCCTGAT;SbPval=0.7;Source=Platypus;TC=86;TCF=49;TCR=37;TR=79;WE=248801619;WS=248801582;set=Platypus	GT:AD:AF:DP	1/1:7,79:0.92:86
chr1	248801611	rs143981271	C	T	3346.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.468;MLEAC=2;MLEAF=1.000;MQ=51.96;MQRankSum=1.267;QD=41.83;ReadPosRankSum=0.910;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,79:0.99:80
chr1	248801633	rs74901534	A	G	3261.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.302;MLEAC=2;MLEAF=1.000;MQ=51.86;MQRankSum=1.227;QD=42.36;ReadPosRankSum=-0.458;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr1	248801778	rs201643849	A	T	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.89;QD=32.39;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	248801944	rs143010547	TCAGCACG	T	9166.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.02;QD=44.28;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	248802249	rs201931676	T	TAGA	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.19;QD=84.40;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	248813126	rs1782238	G	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	248813135	rs4916153	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	248813168	rs2802082	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr1	248813292	rs71199329	T	C	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:46,133:0.74:179
chr1	248813547	rs201161767	G	C	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	248813827	rs1782241	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.186;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=45.24;MQRankSum=-3.107;QD=4.49;ReadPosRankSum=-1.439;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	248813901	rs144600224	A	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=44.49;MQRankSum=-3.623;QD=11.77;ReadPosRankSum=-0.523;SOR=3.737;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	248814052	rs28533004	T	A	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=4.306;MLEAC=1;MLEAF=0.500;MQ=46.31;MQRankSum=-3.863;QD=11.53;ReadPosRankSum=0.219;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:58,72:0.55:130
chr1	248814080	rs1782242	A	C	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.05;QD=25.02;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	248814126	rs28418327	G	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=50.20;MQRankSum=-0.652;QD=2.48;ReadPosRankSum=-2.262;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:121,33:0.21:154
chr1	248845097	rs2000390	C	T	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	248845411	rs11485825	G	A	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	248845458	rs4509608	C	T	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	248845471	rs4575113	T	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	248845499	rs4462184	A	G	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr1	249110906	rs4926508	G	C	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	249145072	rs11434456	C	CA	2894.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:22,81:0.79:103
chr1	249148399	rs12022223	C	T	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	249149486	rs12135449	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	41404	rs10173732	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr2	45895	rs4241318	A	G	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	224919	rs2290911	A	G	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=0.646;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:18,44:0.71:62
chr2	224970	rs2290912	C	T	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.70;ReadPosRankSum=-1.229;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,44:0.77:57
chr2	230912	rs2306060	A	C	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr2	242732	rs113405432	T	TAAC	1652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=2.447;QD=23.61;ReadPosRankSum=-0.348;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:28,42:0.60:70
chr2	242793	rs62114506	G	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:69,85:0.55:154
chr2	243567	rs11383620	T	TA	3219.73	.	AC=1;AF=0.500;AN=2;DB;DP=303;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:98,184:0.65:282
chr2	262553	rs7596678	T	C	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr2	264019	rs7595075	C	A	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:31,81:0.72:112
chr2	264895	rs4854300	G	C	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	271797	rs59937473	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr2	271998	rs112400131	CA	C	2079.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.849;QD=12.38;ReadPosRankSum=0.779;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:25,143:0.85:168
chr2	272203	rs11553746	C	T	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:68,116:0.63:184
chr2	272840	rs12714401	G	A	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr2	272926	rs12714402	A	G	3752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.835;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=-0.918;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:74,177:0.71:251
chr2	273070	rs12714403	A	G	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	275055	rs144670341	G	GT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=0.592;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	277003	rs79716074	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	283231	rs368562757	A	AT	1287.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:3,56:0.95:59
chr2	287448	rs376142253	TAAA	T	1005.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.74;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	675831	rs2293084	G	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:64,32:0.33:96
chr2	676177	rs2293083	C	G	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	676457	rs2293082	G	C	12880.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr2	676478	rs3215297	T	TGTAA	17849.73	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr2	677213	rs3749138	G	A	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	905385	.	GGTCTGGTCTTTCATTTCCTCCCGGCCTCCTCGCCTGCACTGC	G	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=0.310;QD=15.86;ReadPosRankSum=-0.887;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr2	905442	rs62103942	A	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.769;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=1.991;QD=26.18;ReadPosRankSum=0.992;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr2	1079130	rs4971429	G	A	5316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=4.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.70;ReadPosRankSum=1.756;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:50,129:0.72:179
chr2	1079130	.	GCG	ACA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=87;NR=29;PP=2944;QD=20;SC=TGAGCAGGAGGCGTGCGTCAC;SbPval=0.67;Source=Platypus;TC=166;TCF=120;TCR=46;TR=116;WE=1079151;WS=1079120;set=Platypus	GT:AD:AF:DP	1/0:50,116:0.70:166
chr2	1079132	rs4971430	G	A	5316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.272;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=6.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.74;ReadPosRankSum=2.100;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:53,132:0.71:185
chr2	1079143	rs4971431	A	G	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	1079320	rs4971432	C	T	6725.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	1093965	rs11127460	G	A	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:89,123:0.58:212
chr2	1133188	rs5828807	G	GCACA	697.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr2	1133367	rs79642551	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr2	1168756	rs4597564	G	A	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	1168982	rs7560649	T	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	1241592	rs146197111	C	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	1418192	rs9678281	C	G	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	1426787	rs2276701	G	A	2216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=1.475;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:47,99:0.68:146
chr2	1437163	rs1473936	A	C	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr2	1437410	rs4927578	C	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr2	1440299	rs28909386	A	G	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.863;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=11.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.92;ReadPosRankSum=-0.529;SOR=2.957;set=HC	GT:AD:AF:DP	0/1:27,41:0.60:68
chr2	1440304	.	C	G	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.392;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=1.241;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr2	1442417	rs4425120	C	T	610.85	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr2	1442476	rs1969248	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:15,64:0.81:79
chr2	1442551	rs3036132	ATTTT	A	4860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.682;QD=26.42;ReadPosRankSum=1.973;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:43,141:0.77:184
chr2	1457364	rs2070881	A	G	10034.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr2	1459806	rs4927610	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	1460004	rs4927611	G	T	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:55,98:0.64:153
chr2	1460140	rs4927612	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	1481155	rs2280132	G	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,30:0.31:98
chr2	1481231	rs2175977	G	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:62,45:0.42:107
chr2	1488668	rs6715129	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr2	1491497	rs6727192	T	C	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.112;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:20,39:0.66:59
chr2	1497442	rs9679267	A	G	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr2	1497803	rs1126797	C	T	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:75,118:0.61:193
chr2	1499728	rs2276704	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	1499899	rs732608	C	T	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:109,125:0.53:234
chr2	1499927	rs732609	A	C	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:100,117:0.54:217
chr2	1500665	rs867983	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	1520676	rs1126799	T	C	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chr2	1544617	rs12615819	G	A	3798.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:109,174:0.61:283
chr2	1546327	rs1042589	C	G	2065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.756;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:336,137:0.29:473
chr2	1546361	rs28915689	G	T	6253.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:117,270:0.70:387
chr2	1639122	rs2241457	T	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr2	1642537	rs6729142	T	C	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.56;SOR=3.202;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	1642539	rs6742040	C	T	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	1642545	rs6742039	C	G	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.49;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	1642803	.	CGGGTCTCATTTCAAGGTTTCCTGGGTGTGCACCGCCCCTGATGCTCTGAGCT	C	504.73	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.94;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	1642853	.	GC	G	58	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=1;HapScore=2;MGOF=4;MMLQ=26;MQ=60.0;NF=0;NR=2;PP=58;QD=50.5;SC=GATGCTCTGAGCTGGGTCTCA;SbPval=1.0;Source=Platypus;TC=4;TCF=1;TCR=3;TR=2;WE=1642861;WS=1642843;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr2	1647171	rs6730800	T	C	7375.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	1652822	rs1863135	T	G	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	1664654	rs17841813	A	G	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr2	1667310	rs12475392	G	A	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:54,83:0.61:137
chr2	1696510	rs138859568	AAC	A	4291.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:66,120:0.65:186
chr2	1747993	rs62116430	G	A	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	1813057	rs12988270	G	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:52,28:0.35:80
chr2	1916008	rs116264438	T	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr2	1926437	rs1529667	G	T	12839.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr2	1926488	rs13399855	C	T	8712.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:172,367:0.68:539
chr2	1946646	rs7355555	A	C	6222.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:155,283:0.65:438
chr2	1946914	rs3748988	A	G	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:118,161:0.58:279
chr2	3193040	rs17682	G	A	3385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=1.655;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:89,152:0.63:241
chr2	3200948	rs1037467	C	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	3212247	rs7584823	G	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr2	3212704	rs7595702	C	A	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,117:0.65:181
chr2	3212817	rs12467123	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	3217777	rs11127386	A	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.25;QD=31.12;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	3217794	rs10865535	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.55;QD=30.82;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	3217908	rs11682452	G	C	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	3277947	rs2694081	T	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr2	3322555	rs62121538	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr2	3322797	rs12618407	C	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:56,95:0.63:151
chr2	3341693	rs80177267	A	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:71,27:0.28:98
chr2	3342009	rs3811617	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	3356849	rs4854122	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr2	3356850	rs12479261	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr2	3356953	rs2875394	A	T	5493.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.080;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.41;ReadPosRankSum=-0.607;SOR=0.375;set=HC	GT:AD:AF:DP	1/1:1,207:1.00:208
chr2	3356995	rs62119517	G	A	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:107,181:0.63:288
chr2	3358458	rs146001084	ATTATGAAGTTAGAT	A	5316.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	3391826	rs11127423	C	T	1746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-2.086;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:37,83:0.69:120
chr2	3392075	rs10865541	T	C	11641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=-0.307;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:239,504:0.68:743
chr2	3392295	rs11686212	A	G	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:157,223:0.59:380
chr2	3392319	.	GC	AG	5812.77	.	AC=1;AF=0.500;AN=2;DP=373;JOINED;set=Intersection	GT:AD:AF:DP	0/1:215,155:0.42:370
chr2	3392513	rs12999423	TT	CA	8853.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;JOINED;set=Intersection	GT:AD:AF:DP	0/1:142,225:0.61:367
chr2	3393565	rs71396985	C	CAA	4110.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:59,104:0.64:163
chr2	3425514	rs7558487	G	C	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr2	3425948	rs10206964	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	3460870	rs7579428	T	C	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	3469278	rs4971513	C	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr2	3469463	rs4971514	G	C	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,65:0.72:90
chr2	3470115	rs7593516	T	C	8274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.38;ReadPosRankSum=1.473;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:143,211:0.60:354
chr2	3470124	rs7574517	G	A	8419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.82;ReadPosRankSum=0.846;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:147,222:0.60:369
chr2	3470186	rs11691759	G	C	4127.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:105,184:0.64:289
chr2	3470254	rs11677515	T	G	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:54,109:0.67:163
chr2	3481637	rs4535074	T	C	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr2	3481659	rs4321399	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr2	3481716	rs4535075	T	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr2	3482796	rs11890651	T	G	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:52,73:0.58:125
chr2	3482912	rs13431788	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr2	3483205	rs6767	C	T	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:100,176:0.64:276
chr2	3483390	rs7569694	T	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr2	3488502	rs9752130	A	G	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:153,219:0.59:372
chr2	3502709	rs10208494	A	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr2	3502909	rs10627319	A	ACTT	7018.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=308;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:117,179:0.60:296
chr2	3502910	rs58219575	G	T	7027.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=290;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:117,172:0.60:289
chr2	3502932	rs10194787	G	A	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:87,117:0.57:204
chr2	3504290	rs6146601	GTGTACCTGCCGCCGCA	G	1897.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr2	3504687	rs9950	A	G	5367.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:136,244:0.64:380
chr2	3504819	rs34240449	A	G	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:69,105:0.60:174
chr2	3504893	rs35008570	G	GA	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr2	3523324	rs10179340	A	G	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-1.747;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:66,45:0.41:111
chr2	3605468	rs12711976	A	G	7333.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	3605528	rs62106013	T	G	8744.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	3605538	rs34613047	A	C	6157.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.41;ReadPosRankSum=-0.310;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:2,188:0.99:190
chr2	3627648	rs7576238	G	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	3652616	rs3769507	G	C	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	3653576	rs7604806	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	3653844	rs3739147	T	C	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	3660752	rs3811531	T	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	3660856	rs7567724	G	A	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:51,100:0.66:151
chr2	3685046	rs3811528	T	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	3685074	rs3811527	A	G	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	3718692	rs13409104	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:76,44:0.37:120
chr2	3721632	rs13390724	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=2.004;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr2	3721729	rs12105179	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:57,18:0.24:75
chr2	3725964	rs72769388	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.569;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr2	3726163	rs2043080	T	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr2	3749084	rs11689171	T	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:166,90:0.35:256
chr2	3749151	rs66473381	GGAA	G	1869.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:106,53:0.33:159
chr2	3749267	rs11681270	G	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr2	3751606	rs56104311	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-2.790;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr2	3774436	rs357940	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	3774448	rs12711970	T	C	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	3774519	rs357941	T	C	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	3800095	rs56857953	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr2	3800383	rs357969	C	T	1613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=1.217;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:259,98:0.27:357
chr2	3800496	rs357968	C	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:179,75:0.30:254
chr2	3815250	rs10180257	A	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr2	3815477	rs17017989	T	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:105,63:0.38:168
chr2	3815532	rs11404437	A	AT	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr2	3826324	rs13005405	C	T	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr2	3826387	rs13021385	T	C	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:171,90:0.34:261
chr2	3826597	rs13035992	G	A	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:120,56:0.32:176
chr2	4135981	rs1024026	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,40:0.39:102
chr2	4136115	.	C	G	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.781;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.827;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:18,49:0.73:67
chr2	4136145	rs1024027	A	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr2	4672834	rs71906919	CTG	C	135.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	5834249	rs3841075	G	GTGA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.346;QD=3.24;ReadPosRankSum=-0.249;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr2	7001225	.	ACACACACACG	A	410	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=20;MQ=59.66;NF=23;NR=18;PP=410;QD=10.512195122;SC=ATGTACGTATACACACACACG;SbPval=0.42;Source=Platypus;TC=59;TCF=35;TCR=24;TR=41;WE=7001245;WS=7001214;set=Platypus	GT:AD:AF:DP	0/1:18,41:0.69:59
chr2	7001233	rs3085147	ACG	A	5060.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=4.595;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.82;ReadPosRankSum=1.356;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:1,120:0.99:121
chr2	7001249	rs202012587	ACACACACACC	A	111.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-1.601;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr2	7001251	.	ACACACACC	A	1548.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=1.979;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:30,60:0.67:90
chr2	7001259	.	C	A	2199	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=2;HapScore=1;MGOF=99;MMLQ=24;MQ=59.8;NF=83;NR=43;PP=2199;QD=17.7283429567;SC=ACACACACACCCACACACTTA;SbPval=0.53;Source=Platypus;TC=128;TCF=84;TCR=44;TR=126;WE=7001267;WS=7001249;set=Platypus	GT:AD:AF:DP	1/1:2,126:0.98:128
chr2	7003879	rs2712039	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	7005069	rs2595172	C	T	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	7005369	rs11678810	A	G	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	7005992	rs4669108	C	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	7017903	rs10182815	A	G	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	7019079	rs6704746	A	G	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	7027323	rs9917321	T	A	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	7046272	rs377415081	TACACAC	T,TACACACAC	1086.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.548;QD=16.98;ReadPosRankSum=0.127;SOR=0.569;set=HC	GT:AD:AF:DP	1/2:12,34,18:0.53,0.28:64
chr2	7050483	.	ATG	A	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.313;QD=3.78;ReadPosRankSum=-1.355;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr2	7076975	rs55971680	A	AGT,AGTGT	785.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;set=Intersection	GT:AF:DP	1/2:0.38,0.47:32
chr2	7130571	.	CTA	C	117	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.25;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	7137067	rs364891	A	G	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	7137317	rs378548	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	7154632	rs309325	T	C	10014.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr2	7154826	rs58700190	A	AT	913.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.837;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:137,66:0.33:203
chr2	7170388	.	C	CTG	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.766;QD=9.77;ReadPosRankSum=-1.058;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr2	7179630	.	G	A	583.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr2	7208362	.	G	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.761;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:146,32:0.18:178
chr2	7243449	rs10617957	AGTGTGTGT	AGT,A	6684.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=172;set=Intersection	GT:AF:DP	1/1:1.00:162
chr2	7386192	rs72770055	T	C	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr2	7403641	rs111726098	T	TACAC,TACACAC	1283.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;set=Intersection	GT:AF:DP	1/2:0.23,0.77:30
chr2	7409989	rs10548278	TTG	T	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.536;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:104,18:0.15:122
chr2	7421569	rs142314951	C	CTG	2131.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:5,68:0.93:73
chr2	7471480	.	TCA	T	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.492;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:72,28:0.28:100
chr2	7540646	rs5829105	C	CA	4071.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	7540695	rs2163257	C	G	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	7540784	rs4669196	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	8178735	rs1364054	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:120,60:0.33:180
chr2	8178798	rs62104935	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:81,46:0.36:127
chr2	8822912	rs3845751	A	C,AC	4804.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.928;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=11.013;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=41.07;ReadPosRankSum=1.120;SOR=0.040;set=HC	GT:AD:AF:DP	1/2:6,67,44:0.57,0.38:117
chr2	8870814	rs6431959	A	G	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	8887180	rs3351	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr2	8887426	rs12622593	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr2	8887910	rs1978841	A	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	8910987	rs12476359	A	T	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	8911010	rs17630893	T	C	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:23,72:0.76:95
chr2	8916847	rs4669338	A	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	8943291	rs2356658	G	A	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	8998624	rs10929559	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	9419411	rs10193043	G	A	5583.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.04;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	9419411	.	GACAC	AACAC,AACAT	1246	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=95,28;NR=55,21;PP=1246,655;QD=8.53847475031;SC=TCTCAGCACAGACACGGTTTA;SbPval=0.53;Source=Platypus;TC=150;TCF=95;TCR=55;TR=150,49;WE=9419423;WS=9419401;set=Platypus	GT:AF:DP	0/1:1.00:150
chr2	9419415	rs10170149	C	T	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.621;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:118,56:0.32:174
chr2	9458460	rs3811599	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	9460234	rs17522163	G	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.022;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=-1.111;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr2	9463454	rs12475160	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr2	9467815	rs7569295	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr2	9475337	rs4392227	A	G	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:66,148:0.69:214
chr2	9484542	rs6724103	C	T	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	9484561	rs79044067	TAAAA	T	4885.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	9491017	rs4669385	C	T	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	9496291	rs2709591	T	C	3902.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:126,180:0.59:306
chr2	9515099	.	TAA	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.057;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr2	9528536	rs2715860	G	C	4826.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:127,206:0.62:333
chr2	9547171	rs10929579	G	A	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.997;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:38,50:0.57:88
chr2	9552379	rs10929581	C	T	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-1.349;QD=15.35;ReadPosRankSum=-1.690;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:39,73:0.65:112
chr2	9552383	rs112462761	A	AT	1145.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:50,71:0.59:121
chr2	9554255	rs10208358	G	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr2	9554280	rs12474647	A	T	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:51,91:0.64:142
chr2	9554461	rs10185646	C	A	4606.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:94,200:0.68:294
chr2	9558905	rs35904811	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.110;QD=0.99;ReadPosRankSum=0.035;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr2	9569972	rs7589401	A	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:54,101:0.65:155
chr2	9571054	rs2002044	C	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	9572888	rs12478467	A	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr2	9576553	rs6432003	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr2	9580540	rs111411247	G	GT	819.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr2	9583922	rs11681316	A	G	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:25,67:0.73:92
chr2	9613289	rs2001658	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	9615556	rs6432007	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	9616035	rs7591166	A	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr2	9616301	rs3831465	TAGG	T	439.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	9630231	rs6705408	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	9630244	rs3833563	AT	A	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr2	9631340	rs10495562	T	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr2	9633137	rs4622692	T	G	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:24,88:0.79:112
chr2	9634856	rs1048610	A	G	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:72,145:0.67:217
chr2	9642446	.	A	T	1956.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:25,72:0.74:97
chr2	9642478	rs34367192	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr2	9642521	rs13031491	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr2	9650350	rs35431407	C	CATAA	2266.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,57:0.63:91
chr2	9661184	rs4328603	T	C	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr2	9662410	rs35744046	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr2	9695906	rs12692386	A	G	425.96	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	9770589	rs200302461	G	GCGGGGC	1187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.372;QD=12.37;ReadPosRankSum=1.066;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:62,34:0.35:96
chr2	9983591	rs35818430	A	AG	4230.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	9983716	rs385513	A	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	9986162	rs287987	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	9991556	rs287991	G	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	9991867	rs287992	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	10008792	rs150737308	G	A	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:71,120:0.63:191
chr2	10023016	rs447465	T	C	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	10044941	rs450192	G	T	2461.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.155;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.45;ReadPosRankSum=1.550;SOR=2.101;set=HC	GT:AD:AF:DP	1/1:4,101:0.96:105
chr2	10044946	rs450194	G	T	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=1.928;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	10045014	rs400917	C	T	13716.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr2	10045024	rs396190	G	A	14383.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.31;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr2	10045147	rs448327	A	G	7980.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	10050947	rs1054561	T	C	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	10050960	rs1054565	A	G	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	10051053	rs10495576	G	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	10051792	rs2241664	A	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	10053412	rs12467598	C	T	7775.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr2	10059770	rs1820965	G	T	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	10085191	.	A	G	555.77	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr2	10091952	rs111645870	G	A	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:49,79:0.62:128
chr2	10092019	rs187290376	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr2	10092933	rs141313862	CTTAG	C	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.793;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	10093003	rs73913928	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr2	10094992	rs2303918	A	G	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	10095020	rs150405807	G	GT	1676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.743;QD=12.06;ReadPosRankSum=1.185;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:46,93:0.67:139
chr2	10095185	rs16867251	T	C	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:68,131:0.66:199
chr2	10095374	rs13401891	C	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr2	10101468	rs16867256	A	G	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:73,133:0.65:206
chr2	10102735	rs41264179	T	C	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:40,81:0.67:121
chr2	10105535	rs41264203	T	C	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:51,135:0.73:186
chr2	10105584	.	A	AT	883.73	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:23,58:0.72:81
chr2	10105644	rs11884250	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	10126123	rs1835424	A	T	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr2	10126330	rs2303920	G	A	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:77,108:0.58:185
chr2	10126416	rs16867274	A	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	10130973	rs12475243	T	G	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:38,79:0.68:117
chr2	10132118	.	A	AT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0.000;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=1.177;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:324,63:0.16:387
chr2	10133728	rs6711126	T	C	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.276;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=1.684;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:169,80:0.32:249
chr2	10133820	rs6750565	C	T	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.582;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:102,44:0.30:146
chr2	10135855	rs11674576	T	C	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr2	10135956	rs41264205	G	A	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:256,136:0.35:392
chr2	10136592	rs16867277	T	C	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr2	10138953	.	CAT	C	47	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.7536;HP=2;HapScore=4;MGOF=84;MMLQ=21;MQ=60.0;NF=2;NR=0;PP=47;QD=32.5;SC=TATATGTACACATATATATAT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=10138965;WS=10138943;set=Platypus	GT:AD:AF:DP	1/0:0,2:1.00:2
chr2	10138983	.	T	C	49	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=2;HapScore=2;MGOF=72;MMLQ=28;MQ=65.19;NF=4;NR=0;PP=49;QD=20.9428031368;SC=TATGTACACATATATATACGT;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=10138991;WS=10138973;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	10139017	.	CA	TA	341	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000,0.9996;HP=2;HapScore=4;MGOF=23;MMLQ=14;MQ=66.18;NF=5,4;NR=1,1;PP=208,341;QD=37.1666666667;SC=CATATATATACATATATATAT;SbPval=0.55;Source=Platypus;TC=8;TCF=7;TCR=1;TR=6,5;WE=10139025;WS=10139007;set=Platypus	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	10139017	.	CA	CACATA	341	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000,0.9996;HP=2;HapScore=4;MGOF=23;MMLQ=14;MQ=66.18;NF=5,4;NR=1,1;PP=208,341;QD=37.1666666667;SC=CATATATATACATATATATAT;SbPval=0.55;Source=Platypus;TC=8;TCF=7;TCR=1;TR=6,5;WE=10139025;WS=10139007;set=Platypus	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	10140651	rs2163338	A	G	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:159,83:0.34:242
chr2	10188649	rs11687357	A	T	8884.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr2	10224233	.	G	A	379.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr2	10225241	rs6432058	C	T	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	10226306	rs34098251	G	GC	4475.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	10262920	rs1130609	T	G	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	10264057	rs6432065	T	C	8202.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr2	10281903	rs5829249	G	GC	3966.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	10282147	rs11896140	T	C	9550.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr2	10332539	rs13392520	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	10332876	rs56228505	AC	A	479.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr2	10350599	rs7423163	G	C	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.759;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:192,73:0.28:265
chr2	10560267	rs143407085	G	A	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:89,169:0.66:258
chr2	10560335	.	C	CTTT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.956;QD=11.04;ReadPosRankSum=0.000;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	10563236	rs55737425	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-1.073;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:71,42:0.37:113
chr2	10566792	rs2270306	C	G	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=6.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.502;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:160,64:0.29:224
chr2	10566804	rs2270307	A	G	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.258;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:182,70:0.28:252
chr2	10585302	rs2302613	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	10586780	rs28362380	T	C	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.47;ReadPosRankSum=-0.544;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	10586790	rs7608353	A	G	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.74;ReadPosRankSum=-0.249;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr2	10587169	rs7558559	T	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	10595534	rs6721235	T	C	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:114,67:0.37:181
chr2	10712278	rs3732114	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=1.139;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chr2	10717714	rs12473957	G	C	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:49,110:0.69:159
chr2	10729897	rs759403	C	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	10740841	rs4668692	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	10741141	rs10181806	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	10743153	rs2287061	C	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	10743191	rs2287062	G	A	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	10743319	rs2287063	T	C	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.695;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:163,67:0.29:230
chr2	10747246	rs6744854	C	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	10747271	rs6759740	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	10762302	rs70953325	TA	T	9094.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	10784491	rs3732111	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.439;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr2	10784528	rs3821196	T	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.036;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr2	10808776	rs55925118	C	CAA	3247.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	10811535	rs5829273	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.454;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr2	10813782	rs6748766	T	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	10815833	rs9287721	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	10908893	rs1198849	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:88,54:0.38:142
chr2	10911891	rs1198850	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	10912153	rs2171773	T	G	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr2	10915020	rs2969881	A	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:180,80:0.31:260
chr2	10915090	rs58188788	T	A	3819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=10.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-2.137;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:90,177:0.66:267
chr2	10922516	rs1686482	A	C	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr2	10924524	rs1198873	T	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-1.734;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr2	10927345	rs1686510	T	C	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.919;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-0.057;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:38,25:0.40:63
chr2	10928694	rs11409434	G	GA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=5.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.947;SOR=2.034;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr2	10928710	rs1734433	A	C	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=1.007;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:76,31:0.29:107
chr2	10928777	rs2952626	A	C	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:212,92:0.30:304
chr2	10928906	rs1734432	T	C	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:235,132:0.36:367
chr2	10928962	rs1734431	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:202,107:0.35:309
chr2	10929133	rs1734430	A	G	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr2	10929867	rs11904084	T	C	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.020;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:136,50:0.27:186
chr2	10930050	rs1686514	A	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr2	10930106	rs200934850	ATTTT	A	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.81;ReadPosRankSum=0.967;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	10930903	rs4807	T	C	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:226,122:0.35:348
chr2	10931001	rs1614107	A	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr2	10932082	rs1734421	T	C	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr2	10933249	rs4799	C	T	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.677;QD=4.12;ReadPosRankSum=0.442;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:240,86:0.26:326
chr2	10933346	rs143770934	T	TAGGC	902.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.534;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr2	10937037	rs1734343	T	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr2	10937065	rs1734344	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr2	10937409	rs1686444	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr2	10938043	rs56346617	T	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	10942567	rs1686434	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr2	10942687	rs4758	C	T	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:279,140:0.33:419
chr2	10950284	rs1734449	G	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr2	10952790	rs6726687	T	C	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.906;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:236,88:0.27:324
chr2	10961184	rs1686497	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	10994418	rs1198852	T	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	11053020	rs3732104	A	G	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	11053740	rs3732105	C	T	11551.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr2	11273407	rs141443952	G	GTC,GTCTC	13559.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=477;MQ=60.16;set=Intersection	GT:AF:DP	1/2:0.19,0.71:424
chr2	11273426	.	T	TCTCA	2991	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=2;MGOF=13;MMLQ=28;MQ=60.11;NF=54;NR=114;PP=2991;QD=20;SC=TCTCTCTCTCTGACACAAGCG;SbPval=0.42;Source=Platypus;TC=288;TCF=88;TCR=200;TR=168;WE=11273447;WS=11273416;set=Platypus	GT:AD:AF:DP	1/0:120,168:0.58:288
chr2	11280500	rs10611339	TA	T	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.013;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=8.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-1.014;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr2	11295226	rs148805827	C	CG	405.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	11300732	rs2271622	C	T	9066.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:183,402:0.69:585
chr2	11300869	rs6432182	T	C	8975.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr2	11300927	rs59329825	TAAA	T	1273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.529;QD=14.64;ReadPosRankSum=-2.510;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:24,63:0.72:87
chr2	11304471	.	A	ATATT	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.24;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.034;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr2	11312181	rs12987956	G	A	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:32,89:0.74:121
chr2	11312224	rs3732103	C	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr2	11333994	rs2271621	T	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr2	11348364	rs141148984	C	CTAACT	439.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	11348609	rs5829297	CAAAT	C	749.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	11356190	rs726843	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	11357100	rs57554471	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	11359031	rs9808228	G	T	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	11359120	rs2230774	G	T	537.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=0.512;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,24:0.89:27
chr2	11359300	rs17463952	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	11590393	.	T	TA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.225;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.734;QD=1.33;ReadPosRankSum=-0.614;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr2	11680896	rs34137466	CAA	C	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	11702661	rs10929757	A	C	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	11718591	rs1529868	C	T	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	11738091	rs1435547	T	C	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr2	11738765	rs1865575	C	T	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	11741193	rs11681838	C	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	11752635	rs2304399	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	11755443	rs2252958	T	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	11757009	rs6735957	A	G	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	11757023	rs892868	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr2	11765451	.	A	G	1706.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,72:0.65:110
chr2	11774324	rs2304402	G	A	6981.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:134,312:0.70:446
chr2	11775296	rs111631311	AG	A	1683.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr2	11775298	.	C	T	1692.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr2	11810095	rs6432225	G	A	6571.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	11817812	rs4669769	G	C	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	11853774	rs12465629	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	11853988	rs12465630	A	T	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	11854099	rs4668739	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	11905636	rs3214670	GT	G	2260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=4.740;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.042;QD=11.90;ReadPosRankSum=1.735;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:66,124:0.65:190
chr2	11907842	rs45509591	C	T	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:66,114:0.63:180
chr2	11911761	rs11538448	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr2	11924950	rs3795974	T	C	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:61,125:0.67:186
chr2	11931773	rs72775811	G	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.48;ReadPosRankSum=-0.349;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	11932173	rs7561070	G	T	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr2	11936798	rs2577264	A	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	11944746	rs111652164	TG	T	1659.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	11945108	.	GT	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.945;QD=0.60;ReadPosRankSum=-0.693;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr2	11959905	rs2716609	T	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	12877501	rs5829384	G	GA	3351.73	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:197,106:0.35:303
chr2	15319022	rs3731995	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr2	15319070	rs5829492	TA	T	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.702;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:75,37:0.33:112
chr2	15326834	rs2302940	T	C	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:239,125:0.34:364
chr2	15372562	rs6710817	C	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:104,41:0.28:145
chr2	15378822	rs140225141	G	GAATT	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	15415525	rs3755127	C	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr2	15417280	rs3214432	ATT	A	995.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr2	15417285	rs75287593	T	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr2	15427173	rs4668892	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:133,58:0.30:191
chr2	15448311	rs1318102	A	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:88,69:0.44:157
chr2	15468025	rs2042145	T	C	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:152,74:0.33:226
chr2	15491994	.	GCACACACACACA	G,GCA	9544.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=279;set=Intersection	GT:AF:DP	1/2:0.24,0.75:247
chr2	15493881	rs2277915	A	G	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	15519992	rs2058866	G	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	15523266	rs6756934	A	T	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	15523307	rs3834149	TA	T	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.75;QD=22.14;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	15523549	rs3755129	T	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	15533689	rs2380650	T	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	15533734	rs139494535	G	GAAATGAAAGCGTATGTCTACAC	2604.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	15533779	rs9710889	G	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=25.65;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	15533884	rs9710962	C	A	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	15533895	rs13417550	A	G	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.67;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	15533899	rs11689153	A	G	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.08;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	15564718	rs10929367	T	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	15567649	rs3796002	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	15601287	rs11411624	A	AT	4864.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	15601441	rs7590340	C	T	6812.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	15601574	rs7590458	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	15607842	rs4668909	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	15608013	rs4668910	C	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	15614404	rs13014906	T	C	5718.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	15615910	rs1990754	A	G	9568.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr2	15616013	rs1990755	C	G	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	15616030	rs1990756	C	T	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=1.850;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	15618339	rs1125534	G	A	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	15623608	rs10201564	C	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	15644107	rs3732002	C	A	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.80;SOR=4.343;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	15644111	rs3732003	C	T	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=4.143;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	15644401	rs2287265	C	T	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	15674686	rs13029846	T	C	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	15676686	rs10208972	G	A	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	15676703	rs57935128	T	TA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.722;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr2	15678368	rs7595512	C	T	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	15678482	rs2380657	T	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	15678501	rs66736557	GA	G	2187.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	15679609	rs2058868	A	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.40;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	15691886	rs7572131	G	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	15694164	rs34789730	T	TA	7149.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	15731998	rs10221770	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr2	15735648	rs2302929	T	C	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.662;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:111,58:0.34:169
chr2	15736664	.	G	T	141.77	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	15736697	rs2032778	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	15746220	rs41264195	C	T	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.803;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:109,38:0.26:147
chr2	15747393	rs10929378	C	T	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:163,81:0.33:244
chr2	15753279	rs2302934	C	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr2	15768981	rs62122280	C	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	15769607	rs807635	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	15770293	rs77816897	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	15840505	rs4668460	C	A	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	15840522	rs4668461	G	T	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	15840645	rs4668962	T	C	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	15841230	rs1421610	T	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	15841288	rs1421609	G	A	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	16743453	rs6751062	A	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.144;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr2	16746897	rs62122698	C	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	17773524	rs2680827	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr2	17830599	rs79992476	T	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr2	17836450	rs144020266	C	CT	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr2	17836722	.	TCA	T,TCACACA	578.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=4.559;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.459;QD=24.11;ReadPosRankSum=-1.214;SOR=1.447;set=HC	GT:AD:AF:DP	1/2:1,15,8:0.62,0.33:24
chr2	17860103	rs186276632	A	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr2	17876548	.	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DP=238;set=Intersection	GT:AD:AF:DP	0/1:171,66:0.28:237
chr2	17888457	rs6734462	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr2	17890091	rs10657992	G	GTATA	660.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr2	17898326	rs12469221	C	T	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr2	17902381	rs11897477	C	G	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:122,56:0.31:178
chr2	17907628	rs77157592	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr2	17913266	rs2052746	A	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	17927275	rs12474069	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	17941423	rs2555072	T	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	17942775	rs1812152	T	A	7974.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr2	17946243	rs16981869	A	G	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.078;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:141,58:0.29:199
chr2	17948034	rs16983838	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr2	17949939	rs72407975	TTAA	T	422.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr2	17954027	rs300175	G	A	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	17954140	rs300176	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	17954421	rs300177	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	17954647	rs300178	T	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	17959405	.	GTA	G	372.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr2	17959420	rs10535305	TAC	T	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=-1.121;QD=12.87;ReadPosRankSum=1.453;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	17959443	rs71402623	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	17962450	rs300168	A	G	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:69,135:0.66:204
chr2	17962518	rs300169	C	T	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	17998025	rs34069439	A	T	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:74,148:0.67:222
chr2	17998095	rs35858730	C	T	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:84,164:0.66:248
chr2	17998331	rs13001625	T	C	10979.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:291,475:0.62:766
chr2	18112473	rs4240213	G	A	8322.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	18113623	rs4832524	A	G	4326.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:112,187:0.63:299
chr2	18113789	rs3747515	G	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr2	18767384	rs11096544	G	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	20131184	rs1191779	C	A	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	20131987	rs4294960	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	20135283	rs6741091	T	C	9137.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	20160250	rs12996974	G	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	20173255	rs10153717	A	C	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	20189089	rs3731663	C	T	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=1.267;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	20192696	rs7569975	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	20192931	rs35973216	G	A	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	20194036	rs3820949	G	C	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	20202811	rs11681705	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	20202929	rs28452699	C	T	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	20205423	rs5829721	A	AAAAG	2666.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	20205680	rs28401180	C	T	10015.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr2	20205848	rs28598872	G	A	9066.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	20233135	rs1191824	T	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	20237512	rs57679180	TA	T	142.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=0.282;QD=11.89;ReadPosRankSum=-1.593;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	20302483	.	G	GAA	266.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=13.485;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.786;QD=5.44;ReadPosRankSum=3.637;SOR=3.513;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr2	20302484	.	G	GAAGAAGA	266.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=13.485;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.786;QD=5.44;ReadPosRankSum=3.602;SOR=3.513;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr2	20302490	.	GAGA	G,AAGA	1611.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.91;QD=34.29;SOR=3.160;set=HC	GT:AD:AF:DP	1/2:0,11,36:0.23,0.77:47
chr2	20320489	rs376838936	AAAGG	A	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-0.616;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr2	20401858	rs11350492	TA	T	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=1.550;QD=6.49;ReadPosRankSum=-1.488;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr2	20403794	rs10205485	A	T	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	20403949	rs2230924	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:120,63:0.34:183
chr2	20405050	rs6531225	A	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	20423154	rs4666375	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	20424062	rs138986173	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.557;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr2	20455176	rs111928251	GT	G	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.266;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.020;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	20462852	rs3796066	G	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr2	20525948	rs9306890	T	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr2	20526278	.	C	G	135.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	20647241	rs7043	C	T	4764.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:153,228:0.60:381
chr2	20699667	rs342089	C	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	20700900	rs342088	A	G	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	20818764	rs3732149	C	T	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:228,143:0.39:371
chr2	20822218	rs4666444	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	20823724	rs6531248	T	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	20823850	rs6733419	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	20824498	rs2305458	C	T	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:73,48:0.40:121
chr2	20838222	rs3796065	C	T	1450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=3.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.060;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:253,97:0.28:350
chr2	20841059	rs4666449	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	20867122	.	G	GGGCGGCGGCGGCGGCGGC	262.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.640;QD=20.19;ReadPosRankSum=-0.100;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr2	20871190	rs4666457	A	C	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	20885321	rs17663874	C	A	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:80,163:0.67:243
chr2	20939708	rs653347	C	T	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:85,121:0.59:206
chr2	21225281	rs1042034	C	T	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	21232195	rs693	G	A	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:293,136:0.32:429
chr2	21232803	rs584542	T	C	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.14;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	21232803	.	TG	CA,CG	2310	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=28,96;NR=34,115;PP=674,2310;QD=11.7333528204;SC=TGCTCAAGAATGTCATTTATT;SbPval=0.54;Source=Platypus;TC=212;TCF=96;TCR=116;TR=62,211;WE=21232812;WS=21232793;set=Platypus	GT:AF:DP	0/1:0.29:212
chr2	21232804	rs1041968	G	A	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.258;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:165,73:0.31:238
chr2	21235475	rs568413	T	C	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	21236482	rs488329	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	21250914	rs679899	G	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr2	21252365	rs67556837	GAGGA	G	1385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.45;MQRankSum=1.626;QD=29.48;ReadPosRankSum=1.967;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:9,38:0.81:47
chr2	21255573	rs10701091	C	CCATCT	1916.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	21263900	rs1367117	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr2	21266751	.	CCAG	C	2984	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=24;MQ=60.0;NF=4;NR=11;PP=2984;QD=20;SC=CTGGCGCCCGCCAGCAGCAGC;SbPval=0.31;Source=Platypus;TC=59;TCF=11;TCR=48;TR=15;WE=21266761;WS=21266741;set=Platypus	GT:AD:AF:DP	0/1:44,15:0.25:59
chr2	21266774	rs17240441	GGCAGCGCCA	G	573.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr2	21360583	rs312966	A	G	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:44,76:0.63:120
chr2	21364562	rs113588790	C	T	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr2	23862187	rs540290	C	G	6832.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	23865260	rs642931	T	C	13811.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr2	23865908	rs527176	G	C	4809.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=11.111;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=0.750;SOR=0.672;set=HC	GT:AD:AF:DP	1/1:3,181:0.98:184
chr2	23919375	rs3795942	C	T	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr2	23925980	rs12466745	T	C	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	23926659	rs3795948	T	C	8231.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr2	23984992	rs2551329	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:99,43:0.30:142
chr2	24009163	rs9636434	A	G	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:50,85:0.63:135
chr2	24042550	rs2879639	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	24055058	rs10432637	G	C	8902.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:190,384:0.67:574
chr2	24080274	rs2712089	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr2	24080446	rs2712087	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	24087914	rs11903165	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	24103432	rs374010112	CA	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.037;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:48,23:0.32:71
chr2	24108557	rs72790304	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,38:0.35:109
chr2	24108652	rs7579201	T	C	6543.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=0.332;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:2,251:0.99:253
chr2	24110911	rs34093830	G	GA	479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-1.389;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr2	24111078	rs17045983	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	24181159	rs12616678	G	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr2	24194314	rs1533440	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr2	24246175	rs12989842	C	T	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	24246679	rs925228	A	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	24255862	rs10179142	C	G	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	24300341	.	C	T	288.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	24362436	rs17046125	T	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.540;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr2	24369674	rs11693860	C	T	8747.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	24384424	rs4665667	T	C	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	24387178	rs113322110	G	GC	3307.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	24388096	rs4665668	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	24388368	rs144561756	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr2	24390517	rs2288072	G	A	6553.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	24395269	rs918802	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	24395294	rs918803	T	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	24395506	rs889830	T	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	24398281	rs2042467	T	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	24398446	rs2042468	A	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	24402127	rs61193015	C	CAA	1955.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	24432211	rs2303293	C	T	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:20,72:0.78:92
chr2	24432620	rs2303294	A	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:13,50:0.79:63
chr2	24432667	rs2303295	C	G	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:38,92:0.71:130
chr2	24439048	rs3731625	A	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr2	24440997	rs2551183	A	T	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	24475205	rs4450560	T	C	9210.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr2	24477391	.	G	A	641.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr2	24484150	rs4665680	T	C	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	24498839	rs4411652	T	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.78;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	24507806	.	G	A	31	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=3;HapScore=2;MGOF=24;MMLQ=25;MQ=56.07;NF=2;NR=3;PP=31;QD=13.1542425094;SC=TCACTCTGTCGCCAGGCTGGA;SbPval=0.48;Source=Platypus;TC=13;TCF=4;TCR=9;TR=5;WE=24507814;WS=24507796;set=Platypus	GT:AD:AF:DP	1/0:8,5:0.38:13
chr2	24521493	rs7559133	C	T	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	24521766	rs6707600	C	T	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	24524958	rs7603997	C	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:119,62:0.34:181
chr2	24550867	.	CAA	C,CA	2835.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=3.147;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=-0.091;SOR=0.379;set=HC	GT:AD:AF:DP	1/2:21,39,136:0.20,0.69:196
chr2	24896389	rs4665712	T	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	24905927	rs11125744	G	C	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	24930486	.	C	T	2490.77	.	AC=1;AF=0.500;AN=2;DP=151;set=Intersection	GT:AD:AF:DP	0/1:49,101:0.67:150
chr2	24933689	rs7593430	A	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	24952740	rs11439247	C	CT	2505.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	24974945	rs11125763	T	G	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	25022442	rs34475213	TA	T	254.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	25022598	rs1550116	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.544;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr2	25037042	rs1003064	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	25039804	rs2099505	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	25040423	rs10178420	G	A	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.976;QD=9.96;ReadPosRankSum=-2.671;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:42,42:0.50:84
chr2	25046090	rs1127568	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	25046355	rs4665273	T	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=36.16;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	25046361	rs5829941	A	AT	216.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.127;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	25047408	rs7604576	A	G	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:50,93:0.65:143
chr2	25047484	rs1814391	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.265;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr2	25048847	rs2289090	A	G	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	25050977	rs7566416	T	C	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	25053678	.	A	G	2740.77	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:41,120:0.75:161
chr2	25053828	rs1056074	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-1.142;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr2	25059745	rs77760734	T	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr2	25064079	rs2241757	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	25064157	rs2241758	G	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-0.779;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr2	25064193	rs2241759	G	A	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,58:0.72:81
chr2	25065274	rs41281519	T	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:126,61:0.33:187
chr2	25100738	rs10865315	C	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:103,47:0.31:150
chr2	25100902	rs2033656	C	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:80,47:0.37:127
chr2	25141434	rs61732745	G	A	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:224,120:0.35:344
chr2	25141538	rs11676272	A	G	5530.77	.	AC=1;AF=0.500;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	0/1:569,297:0.34:866
chr2	25179893	rs77483992	C	T	3771.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:78,166:0.68:244
chr2	25194741	rs7593864	G	A	12311.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr2	25314186	rs2918630	T	C	3220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=1.280;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:72,142:0.66:214
chr2	25344464	rs2276597	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr2	25359422	rs3731631	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:127,57:0.31:184
chr2	25362194	rs6718083	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr2	25368005	rs10188516	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr2	25368030	rs10180231	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	25377176	rs2164808	T	C	6719.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr2	25377329	rs2118404	C	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	25462988	rs79501006	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	25551692	rs12995245	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	25602142	rs2304426	G	A	10332.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr2	25610287	rs66917623	G	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr2	25650631	rs34648410	A	G	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:57,97:0.63:154
chr2	25650668	rs3832082	C	CT	1213.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr2	25655772	rs7583475	T	C	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:37,100:0.73:137
chr2	25656880	rs1395949	C	G	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	25875401	.	T	TA	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.746;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=7.193;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.641;QD=2.73;ReadPosRankSum=0.222;SOR=1.416;set=HC	GT:AD:AF:DP	0/1:134,76:0.36:210
chr2	26082057	rs13422450	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=1.181;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	26161226	rs11388254	C	CA	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.048;QD=5.29;ReadPosRankSum=1.561;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr2	26174882	rs41285967	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr2	26177198	rs17047211	A	G	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:65,149:0.70:214
chr2	26203678	rs1465878	T	C	10914.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr2	26204640	rs6721440	G	A	5000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=0.747;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:107,223:0.68:330
chr2	26321526	rs11678157	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	26350136	rs2289022	G	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	26357748	rs2243834	G	T	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	26399214	rs4665830	G	A	6686.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:149,297:0.67:446
chr2	26405985	rs10779956	A	G	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr2	26408064	rs4665833	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	26415088	.	T	TA	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.021;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr2	26415429	rs5001914	A	G	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	26416301	rs7582341	A	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	26417533	rs1865324	C	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	26420708	rs13387855	T	G	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	26420809	rs2289019	G	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	26454996	rs7593175	A	G	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	26477125	rs147970487	G	GACT	1929.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	26484080	rs70950178	A	ACC	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=35.97;ReadPosRankSum=-1.036;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	26496424	rs78003085	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr2	26512957	rs1056471	G	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	26532491	rs2007556	G	T	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	26532735	rs3856397	G	A	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	26533023	rs3851967	C	T	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	26534801	rs7568529	G	A	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	26536299	rs11886746	C	G	4308.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:87,195:0.69:282
chr2	26536694	rs2052937	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:135,65:0.33:200
chr2	26537499	rs10187359	A	C	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	26587076	rs11674089	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr2	26590084	rs6748996	T	G	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:67,146:0.69:213
chr2	26590118	rs6731447	C	T	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:56,100:0.64:156
chr2	26606347	rs13030294	T	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr2	26607992	rs934280	T	C	6310.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	26609469	rs7585892	G	A	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr2	26625042	rs13003230	C	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=2.874;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:98,30:0.23:128
chr2	26647277	rs7423300	T	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	26652671	rs4356622	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	26653457	rs4450561	G	A	3405.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:332,185:0.36:517
chr2	26663187	.	T	TTG	698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=4.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.92;ReadPosRankSum=2.023;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:10,29:0.74:39
chr2	26663215	rs56218945	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr2	26667130	rs3795958	A	G	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:70,115:0.62:185
chr2	26667615	rs939820	T	C	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	26671092	rs34461558	C	CA	697.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.264;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:17,52:0.75:69
chr2	26671544	rs4072407	A	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	26676322	rs1402962	A	G	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	26677810	rs2280516	A	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	26698682	rs6712188	G	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:37,57:0.61:94
chr2	26699126	rs4335905	C	G	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:42,106:0.72:148
chr2	26699855	rs2272069	G	C	3266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.721;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:82,137:0.63:219
chr2	26700700	rs4665855	G	A	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:65,140:0.68:205
chr2	26700819	rs55806442	TGG	T	935.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr2	26702057	rs10714255	GT	G	797.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr2	26724725	rs6547079	T	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr2	26726752	rs884390	G	A	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:102,220:0.68:322
chr2	26739247	rs7575020	T	A	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	26741961	rs13031859	G	A	10608.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr2	26750557	rs10865425	T	C	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	26750645	rs1879760	G	A	6966.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	26781247	rs4665880	G	C	14048.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr2	26795217	rs59491712	GT	G	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.478;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,39:0.76:51
chr2	26800422	rs1053807	G	A	7013.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	26801586	rs1148956	G	A	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr2	26804008	rs744538	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	26804143	rs744540	T	C	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	26804218	rs935171	G	A	10130.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr2	26818006	rs1148962	T	C	6141.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	26818021	rs1148963	C	T	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	26846282	rs1615551	T	C	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.185;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	26951449	rs1663002	G	A	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	27014980	rs12992046	T	C	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	27015118	rs13014800	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	27015141	rs35344721	G	GC	1564.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	27015610	rs66485845	CCA	C	4850.73	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:304,139:0.31:443
chr2	27015903	rs2289017	T	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	27015969	rs2289018	G	A	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	27157396	rs920437	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.414;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.416;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr2	27157400	rs920436	A	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	27163044	rs3739085	T	C	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:52,82:0.61:134
chr2	27164806	rs3820823	G	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr2	27167784	rs3739088	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr2	27169637	rs3835821	TC	T	2023.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr2	27169842	rs11126784	C	A	4358.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:107,195:0.65:302
chr2	27246285	rs10865456	C	T	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:96,150:0.61:246
chr2	27249245	rs3754733	A	G	3427.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:87,154:0.64:241
chr2	27258251	rs2304714	T	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr2	27258761	rs2304713	C	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr2	27259794	rs13021112	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr2	27261329	rs11690454	A	G	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	27262763	rs146244277	GGGA	G	9428.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	27263122	rs1866654	T	C	7089.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:144,316:0.69:460
chr2	27276202	rs3806520	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:31,82:0.73:113
chr2	27279013	rs2278593	A	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:121,64:0.35:185
chr2	27279416	rs2384570	A	G	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	27280092	rs6711384	T	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	27280127	rs6721395	G	A	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	27280140	rs72808950	C	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.537;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:132,41:0.24:173
chr2	27290525	rs11681145	A	G	8637.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	27291661	rs7575465	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	27292651	rs10865461	T	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr2	27293150	rs1053609	G	T	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:89,156:0.64:245
chr2	27302165	rs2289360	T	C	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:69,125:0.64:194
chr2	27303755	rs2736976	A	G	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	27307769	rs2304682	G	C	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:67,129:0.66:196
chr2	27315252	rs2304681	G	A	2566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=1.613;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:270,145:0.35:415
chr2	27319826	rs9677784	A	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	27323385	rs1131375	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:103,50:0.33:153
chr2	27323468	rs4665371	A	C	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	27324036	rs1057394	G	A	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr2	27324340	.	G	A	1158	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=4;HapScore=2;MMLQ=26;NF=16;NR=21;SC=CTCTGGGCCCGGGGGCATCTC;Source=Platypus;TCF=49;TR=37;WS=27324330;set=Platypus	GT:AD:AF:DP	1/0:60,37:0.38:97
chr2	27324724	rs2384571	G	C	5131.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:142,230:0.62:372
chr2	27324751	rs2384572	G	T	5870.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:158,260:0.62:418
chr2	27351279	rs1866561	G	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr2	27351948	rs6715286	T	G	9761.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	27354173	rs11126874	C	A	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	27354419	rs11695641	C	T	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr2	27355454	rs4665948	A	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	27359887	rs11121	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr2	27424496	rs1006898	G	A	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	27424636	rs1395	G	A	5252.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:125,228:0.65:353
chr2	27426362	rs2580761	G	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr2	27426514	rs1275521	G	C	8675.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	27428147	rs1298361	A	G	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	27428295	rs1275524	A	G	19587.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	1/1:0,743:1.00:743
chr2	27428702	rs1275525	A	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	27428815	rs1275526	C	G	9223.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr2	27428877	rs1275527	C	G	11910.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:2,444:1.00:446
chr2	27435250	rs1275533	A	G	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	27435374	rs11608	G	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr2	27438710	rs11126918	G	A	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:64,32:0.33:96
chr2	27440785	rs1275536	C	T	18965.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:1,683:1.00:684
chr2	27445315	rs3214689	G	GT	1550.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:125,68:0.35:193
chr2	27449293	rs7593448	C	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:75,32:0.30:107
chr2	27460968	rs1141313	A	G	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:437,192:0.31:629
chr2	27462076	rs3739092	C	T	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:204,125:0.38:329
chr2	27462405	rs2014252	T	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr2	27465867	.	C	G	1941.77	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:18,72:0.80:90
chr2	27481460	rs58965570	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr2	27497815	rs60631624	T	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.405;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr2	27499791	.	CTT	C	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=1.016;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	27505782	rs62130709	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:148,62:0.30:210
chr2	27528692	rs4665963	T	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr2	27532870	rs62130714	A	G	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=1.768;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:107,56:0.34:163
chr2	27535311	rs5830041	T	TG	13261.73	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr2	27549833	rs35568684	CA	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.636;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr2	27550967	rs1049817	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr2	27552071	rs143400550	A	G	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.151;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-0.386;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:87,36:0.29:123
chr2	27556721	rs3739095	G	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:95,59:0.38:154
chr2	27558252	rs11684134	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:69,31:0.31:100
chr2	27589810	rs2280737	T	C	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:317,152:0.32:469
chr2	27590165	rs147681314	A	G	8142.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:166,346:0.68:512
chr2	27592423	rs7602534	C	T	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:225,105:0.32:330
chr2	27593000	rs141681782	G	A	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:67,112:0.63:179
chr2	27595756	rs1528533	G	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	27597805	rs3215365	CTT	C	302.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	27598097	rs4665972	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr2	27599132	rs12475426	G	A	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:275,129:0.32:404
chr2	27600239	rs13472	G	A	1680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=4.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-1.392;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:196,104:0.35:300
chr2	27606098	rs2384629	A	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	27656822	rs3214499	G	GA	1545.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:101,55:0.35:156
chr2	27657681	rs77005271	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.521;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.860;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:81,36:0.31:117
chr2	27659491	rs780102	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr2	27663215	rs1260341	T	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:66,30:0.31:96
chr2	27663416	rs1260342	G	T	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:242,97:0.29:339
chr2	27665361	rs780112	C	G	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=7.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.870;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:216,87:0.29:303
chr2	27667297	rs4803	A	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr2	27667520	rs10635082	T	TTTTG	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.583;QD=8.72;ReadPosRankSum=0.807;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr2	27669341	rs11333597	AT	A	1063.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr2	27669365	rs11430923	G	GT	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr2	27670307	rs11126999	G	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:171,71:0.29:242
chr2	27676287	rs56076827	A	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:185,90:0.33:275
chr2	27677691	rs780104	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	27681598	rs780106	A	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	27684734	rs780107	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,38:0.34:112
chr2	27685388	rs780110	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:73,49:0.40:122
chr2	27688601	rs1647276	C	T	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:150,63:0.30:213
chr2	27706640	rs2272417	T	C	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:157,77:0.33:234
chr2	27715207	rs8395	T	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:77,36:0.32:113
chr2	27715416	rs2303369	C	T	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:207,91:0.31:298
chr2	27716494	rs704795	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	27721971	rs813592	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:58,26:0.31:84
chr2	27722416	rs1260320	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.727;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-2.000;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:125,33:0.21:158
chr2	27728777	rs2293572	C	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.651;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr2	27729480	rs2293571	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:183,89:0.33:272
chr2	27729945	.	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr2	27730619	rs140213973	T	C	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=0.367;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:25,42:0.63:67
chr2	27730940	rs1260326	T	C	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:99,53:0.35:152
chr2	27741835	.	G	GC	39	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=21;MQ=60.0;NF=0;NR=2;PP=39;QD=34.5;SC=GGTTGGGTGGGACCTGGCCTC;SbPval=1.0;Source=Platypus;TC=11;TCF=2;TCR=9;TR=2;WE=27741843;WS=27741825;set=Platypus	GT:AD:AF:DP	0/1:9,2:0.18:11
chr2	27803279	rs145678525	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:135,87:0.39:222
chr2	27806793	rs145957642	G	GT	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr2	27858167	.	C	CT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=7.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.685;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:92,32:0.26:124
chr2	27861707	rs11692692	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	27884878	rs1569152	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	27887034	rs9678851	C	A	7501.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	27995781	rs3736594	A	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	28268467	rs6738887	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	28464435	rs6737817	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	28634790	rs12624279	G	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	28718897	rs4665423	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	28748857	rs4666085	T	C	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	28748916	rs10181687	A	C	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:50,94:0.65:144
chr2	28752498	rs6728486	T	C	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	28752555	rs4473343	T	C	8277.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr2	28752727	rs6710800	C	G	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	28752741	rs6725577	A	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	28761257	rs7589169	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	28761282	rs7589254	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	28763374	rs11127162	G	T	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:43,90:0.68:133
chr2	28771452	rs56019402	CTA	C	1082.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	28771624	rs11680168	T	G	3994.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	28771897	rs11680304	T	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr2	28785754	rs7560628	G	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	28788428	rs34237604	AG	A	364.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	28789643	rs10186460	T	C	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:358,170:0.32:528
chr2	28796182	rs116673483	G	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr2	28800894	rs877832	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr2	28802355	rs12466173	G	C	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:37,71:0.66:108
chr2	28804835	rs5830085	GA	G	996.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-1.131;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:35,62:0.64:97
chr2	28805410	rs4666102	C	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr2	28808539	rs13393932	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr2	28812285	rs12468715	T	C	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:24,78:0.76:102
chr2	28812982	rs4666105	C	T	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:41,106:0.72:147
chr2	28814033	rs11681826	A	G	10094.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:246,469:0.66:715
chr2	28814548	rs12464271	A	T	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:101,172:0.63:273
chr2	28814683	rs11127176	T	C	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:53,143:0.73:196
chr2	28816425	rs10176136	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	28816814	rs11462230	C	CTT,CTTT	4559.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.000;QD=26.21;ReadPosRankSum=-0.060;SOR=0.705;set=HC	GT:AD:AF:DP	1/2:16,44,114:0.25,0.66:174
chr2	28816948	rs4665429	C	T	14592.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr2	28817071	rs79817361	A	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr2	28821662	rs7557359	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,66:0.67:99
chr2	28824303	rs1106882	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr2	28824793	rs7601771	C	G	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.681;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:83,100:0.55:183
chr2	28824940	rs67381370	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr2	28840691	rs1534478	C	T	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:70,103:0.60:173
chr2	28841021	rs1881256	G	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=0.161;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	28841049	rs1881255	G	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-1.831;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr2	28847806	rs11127181	C	G	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:78,143:0.65:221
chr2	28849461	rs149607211	CCCCGAGCTCCTTGCT	C	1227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.90;ReadPosRankSum=1.234;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr2	28853352	rs6713038	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr2	28853377	rs6731155	T	C	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr2	28854816	rs2272388	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr2	28854958	rs2199619	C	T	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:71,105:0.60:176
chr2	28855088	rs3071742	C	CTT	1052.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=-0.408;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:22,47:0.68:69
chr2	28855918	rs34314459	A	AG	6736.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	28856047	rs3752901	T	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr2	28863738	rs56350389	A	G	3731.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:62,155:0.71:217
chr2	28865760	rs2272387	T	C	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:123,213:0.63:336
chr2	28865968	rs57817040	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	28975107	rs2276547	G	C	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	29001691	rs1128416	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	29041877	rs13009357	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	29045323	rs4436918	C	T	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	29051958	.	C	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.886;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.851;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr2	29052256	rs12998251	T	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	29052283	rs72449240	G	GT	237.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;QD=18.29;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	29087799	rs13030945	C	A	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	29129300	rs36066576	AT	A	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.586;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:162,60:0.27:222
chr2	29135468	rs6715296	C	G	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	29145725	rs9653591	G	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	29152456	rs1140697	A	G	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	29158613	rs70958225	CAAAAA	C	514.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;QD=36.77;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	29161010	rs4233731	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	29169612	rs3087649	T	C	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	29221994	rs72786175	G	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr2	29222070	rs13009279	G	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:40,100:0.71:140
chr2	29222388	rs57018089	G	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	29225502	rs72786178	T	G	2623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.708;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:130,71:0.35:201
chr2	29225502	.	TCT	GCC	1909	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=20;MQ=59.92;NF=38;NR=28;PP=1909;QD=29.7343617403;SC=GGCCGATGCCTCTCATCCAGA;SbPval=0.53;Source=Platypus;TC=188;TCF=109;TCR=79;TR=66;WE=29225512;WS=29225492;set=Platypus	GT:AD:AF:DP	1/0:122,66:0.35:188
chr2	29225504	rs72786179	T	C	2623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=-0.919;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:131,74:0.36:205
chr2	29225710	rs72786181	C	T	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-1.386;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:30,28:0.48:58
chr2	29226498	rs12613325	G	A	3697.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:69,161:0.70:230
chr2	29226512	rs12623297	A	G	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	29226559	rs12619829	C	T	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	29239942	rs11685375	T	G	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:82,157:0.66:239
chr2	29240060	rs11127202	A	G	3657.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:104,168:0.62:272
chr2	29240582	rs66482868	T	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr2	29240673	rs35166194	G	A	3328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=0.579;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:76,155:0.67:231
chr2	29240686	rs34261417	A	C	3705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=-0.981;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:74,167:0.69:241
chr2	29240783	rs1109758	A	G	5522.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	29245933	rs13420380	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:95,61:0.39:156
chr2	29246044	rs6721861	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr2	29247304	rs66715573	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,47:0.39:119
chr2	29274720	rs895591	A	G	7558.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:196,348:0.64:544
chr2	29287926	rs139768554	C	CGCT	1703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.160;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:91,48:0.35:139
chr2	29294629	rs34253433	C	T	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:254,107:0.30:361
chr2	29294754	rs17744093	G	C	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=1.062;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:134,52:0.28:186
chr2	29295016	rs10200693	A	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.902;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:139,42:0.23:181
chr2	29295676	rs13385188	G	A	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:170,92:0.35:262
chr2	29296870	rs62132765	C	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:185,82:0.31:267
chr2	29297068	rs35929540	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:122,60:0.33:182
chr2	29356669	rs3100232	A	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	29366875	rs3217572	C	CACAG	4268.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	29383256	rs3100246	G	T	9123.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	29383374	rs2305450	G	A	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	29390299	rs11364047	AG	A	3497.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	29416572	rs1670283	T	C	9806.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr2	29419591	rs1670284	G	T	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	29444095	rs1569156	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	29449819	rs2293563	C	T	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:120,51:0.30:171
chr2	29455267	rs2256740	A	G	7270.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr2	29498210	rs4589708	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	29519622	rs2272409	C	T	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	29525341	rs11127213	A	G	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.17;SOR=2.995;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	29525345	rs11127214	T	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.33;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	29541104	rs2276549	C	T	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	29543663	rs2293564	T	C	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	29754721	rs11689790	T	C	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr2	29917940	rs2256376	C	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	29940529	rs2246745	A	T	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:278,116:0.29:394
chr2	30143499	rs4358080	G	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	30381505	rs1137288	T	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	30480196	rs6548005	C	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr2	30682360	rs829574	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr2	30775299	rs12053428	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	30791152	rs6749074	A	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=0.537;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	30828792	rs2248777	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr2	30955528	rs2276567	C	A	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	30959262	rs509380	G	T	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	30968760	rs57880021	ATTTT	A	866.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=13.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.10;ReadPosRankSum=1.263;SOR=6.183;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr2	30976058	rs2926304	C	T	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	30977073	rs485100	G	A	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	30980940	rs508405	C	T	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	30986989	rs579016	G	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:118,50:0.30:168
chr2	31000370	rs6548033	G	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	31009977	rs1915125	G	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	31010212	rs13021213	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:75,30:0.29:105
chr2	31188957	rs889896	C	T	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	31399394	rs372794820	C	T	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:46,76:0.62:122
chr2	31401290	rs4952052	A	C	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	31410579	rs138060261	C	T	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:109,222:0.67:331
chr2	31410708	rs1822496	C	T	10352.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr2	31414807	rs1562022	C	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr2	31414851	rs7587515	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,67:0.69:97
chr2	31415054	rs17010928	G	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,74:0.59:126
chr2	31415967	rs7591444	T	C	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr2	31416213	rs11124248	T	C	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:27,81:0.75:108
chr2	31416305	rs11124249	C	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.849;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.38;ReadPosRankSum=0.355;SOR=2.400;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr2	31416309	rs11124250	A	G	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.81;ReadPosRankSum=0.856;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	31416317	rs12619774	C	G	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.59;ReadPosRankSum=0.480;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	31417290	rs76523220	T	C	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:69,121:0.64:190
chr2	31424885	rs11692905	C	T	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:61,121:0.66:182
chr2	31457817	rs2236170	T	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr2	31467351	rs2295473	T	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:87,57:0.40:144
chr2	31483890	rs13028669	T	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr2	31484334	rs654650	G	A	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	31488965	rs619002	C	T	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	31489627	rs71802781	TACACAC	T	774.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr2	31565316	rs35235275	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,22:0.27:82
chr2	31567743	rs566224	T	C	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	31569471	rs7599175	A	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr2	31569735	rs45459599	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr2	31570376	rs1366813	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr2	31570626	rs4952083	C	T	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-0.608;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	31570631	rs4952084	A	G	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.70;ReadPosRankSum=-0.299;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	31571241	rs13415401	G	C	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr2	31571786	rs1884725	A	G	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:54,89:0.62:143
chr2	31572398	rs1429374	A	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	31572482	rs11408029	T	TG	1363.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr2	31587235	rs1018505	G	A	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=-1.365;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:23,61:0.73:84
chr2	31588288	rs2365842	T	A	4081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-0.466;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:77,187:0.71:264
chr2	31589847	rs2295475	G	A	3764.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:101,171:0.63:272
chr2	31590785	rs761926	C	G	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:38,93:0.71:131
chr2	31600146	rs10187719	T	C	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr2	31609448	rs477626	A	C	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	31611029	rs2073316	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr2	31611367	rs206847	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.105;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr2	31805619	rs619857	T	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	31805675	rs522638	A	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr2	31805706	rs523349	G	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=0.766;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr2	31805826	rs9282858	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:135,70:0.34:205
chr2	31805880	rs142200057	A	AG	7867.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	31806031	rs632148	C	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr2	32312700	rs7561519	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr2	32314473	rs469305	A	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.65;ReadPosRankSum=0.723;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	32324072	rs7566162	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	32361482	rs11392886	T	TC	166.79	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	32362079	rs10627985	G	GTATA	1940.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr2	32369901	rs2365556	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	32379663	rs56272862	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr2	32390834	rs6733481	A	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	32402636	rs4258846	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=1.103;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr2	32418808	rs212751	T	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr2	32429880	rs34353191	A	AT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.615;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr2	32434701	rs212685	A	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	32449871	rs376045897	ATTTT	A	1831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=2.852;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:104,52:0.33:156
chr2	32449879	rs199998217	T	TAAA	1470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=5.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=0.804;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:81,50:0.38:131
chr2	32460348	rs212714	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr2	32461493	rs55638726	T	TC	400.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	32466029	rs212721	A	G	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:80,35:0.30:115
chr2	32475109	rs455060	G	A	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:251,134:0.35:385
chr2	32476390	rs408813	T	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:91,41:0.31:132
chr2	32481793	rs11295492	AT	A	1575.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr2	32481795	rs59966205	T	A	1584.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=1.790;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:64,43:0.40:107
chr2	32532072	.	GGAAA	G	649.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	32620722	rs3731581	A	T	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:134,90:0.40:224
chr2	32667058	rs55734616	C	A	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=4.943;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	32667061	rs60955793	T	A	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=4.343;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	32667182	rs60197615	G	C	8884.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	32688601	rs762019	A	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	32706579	rs9646977	T	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	32712875	rs2366891	A	C	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	32713706	rs2366894	A	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	32733343	.	CTTTTTTTTT	C	1841.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=4.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.49;ReadPosRankSum=1.287;SOR=1.627;set=HC	GT:AD:AF:DP	1/1:2,53:0.96:55
chr2	32735881	rs3731579	A	G	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	32749880	rs2710609	C	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.78;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	32749890	rs2710610	C	T	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	32749893	rs2710611	A	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	32749903	rs2710612	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.65;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	32757349	rs72800834	G	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.366;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-1.133;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr2	32800422	rs35286811	C	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr2	32822729	rs2583713	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	32822957	rs2710625	G	A	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:46,96:0.68:142
chr2	32855615	rs2710623	A	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.93;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	32860415	rs11124286	C	T	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	32961745	rs10200333	T	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	32983480	rs2273664	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:147,63:0.30:210
chr2	33174072	rs150654	A	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	33335847	rs218226	C	T	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	33414009	rs3922572	T	A	308.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	33477964	rs3731575	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.696;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	33488419	rs12468099	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:155,58:0.27:213
chr2	33500848	rs3816479	A	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:180,95:0.35:275
chr2	33525382	rs935996	A	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	33525407	rs2123769	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr2	33540138	rs2276591	G	A	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	33540172	rs3216704	A	AT	955.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr2	33540248	rs1058840	G	A	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	33568191	rs5024712	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr2	33572555	rs6706620	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,69:0.68:102
chr2	33585796	rs4422143	T	C	9496.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	33586464	rs11442294	C	CT	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.799;QD=8.66;ReadPosRankSum=-0.399;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:23,33:0.59:56
chr2	33614187	rs642472	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr2	33622448	rs2367734	T	C	569.80	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr2	33622475	rs12053346	T	C	376.41	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr2	33623306	rs2034693	C	T	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr2	33623387	rs624060	AT	GC	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;JOINED;set=Intersection	GT:AD:AF:DP	0/1:66,104:0.61:170
chr2	33623720	rs8970	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	33623734	rs622716	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	33643740	rs6724875	T	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=1.679;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	33787976	rs10572554	CCTAA	C	1843.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	33952022	rs4670913	C	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	33952055	rs2290101	C	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	33952413	rs4477896	T	C	10099.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	33952456	rs2367810	C	G	10042.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr2	33952621	rs11684598	G	A	18776.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr2	35696612	rs4670472	C	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	36605585	rs4670548	A	G	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:56,35:0.38:91
chr2	36605676	.	A	AT	63	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=10;HapScore=2;MGOF=11;MMLQ=23;MQ=60.0;NF=0;NR=7;PP=63;QD=10.7142857143;SC=GCGGTAAGTCATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=7;WE=36605684;WS=36605666;set=Platypus	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	36668395	rs2276673	T	A	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=1.279;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:103,44:0.30:147
chr2	36669645	rs17018798	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr2	36669670	rs3821157	C	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr2	36704144	rs848547	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:93,39:0.30:132
chr2	36739553	rs848526	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	36740643	rs2293254	C	G	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:23,65:0.74:88
chr2	36756288	rs711247	T	C	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	36775315	rs2270333	C	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=6.294;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-1.164;QD=12.61;ReadPosRankSum=0.404;SOR=2.085;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr2	36775410	rs11318146	CT	C	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.211;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr2	36779144	rs10180760	T	G	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.052;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr2	36781401	rs1533946	T	C	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=0.736;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:27,53:0.66:80
chr2	36782656	rs10178965	G	A	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:68,125:0.65:193
chr2	36782886	rs848642	G	A	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:258,110:0.30:368
chr2	36783127	rs10194100	T	C	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:56,118:0.68:174
chr2	36783215	rs10181664	C	T	3112.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:65,141:0.68:206
chr2	36805676	rs2075226	A	G	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:58,135:0.70:193
chr2	36806021	rs2072534	G	A	3483.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:75,148:0.66:223
chr2	36806051	rs2072533	A	G	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:45,81:0.64:126
chr2	36808350	rs848638	C	T	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:49,81:0.62:130
chr2	36808732	rs848637	T	G	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	36810473	rs11691767	G	T	2456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=-1.005;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:29,104:0.78:133
chr2	36810586	rs14291	T	C	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:20,48:0.71:68
chr2	36824956	rs5830430	G	GC	1307.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	36825137	rs1544655	G	A	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	36825170	rs2287104	T	C	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	36825330	rs11441122	C	CG,CGGCCCAGCCCG	1485.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=48;set=Intersection	GT:AF:DP	1/1:0.98:45
chr2	36825359	.	G	GCCCCGC	1116.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	36943338	rs4670597	C	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	36943419	rs4670598	T	C	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	36994439	rs11124542	A	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:42,65:0.61:107
chr2	37000797	rs3770784	C	G	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	37001570	rs974964	C	T	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	37010557	rs116552431	G	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:173,76:0.31:249
chr2	37077015	rs723674	C	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	37094945	rs2540923	A	G	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	37095139	rs6752845	G	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	37096970	rs2160379	C	T	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	37129618	rs148671880	A	ATAAT	2202.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.89;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	37230888	rs2706811	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr2	37232927	rs139942041	GT	G	512.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=11.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-0.141;SOR=0.103;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr2	37232929	rs369798714	T	G	521.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.761;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=14.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-0.226;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr2	37234480	.	C	CTTT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.47;ReadPosRankSum=-0.000;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	37234519	rs2013223	T	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	37241050	rs17020125	G	A	4216.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:91,185:0.67:276
chr2	37248015	rs17020136	T	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr2	37255015	rs2540998	G	A	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	37260027	rs5830450	G	GT	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.576;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	37267428	rs79461666	C	G	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:78,125:0.62:203
chr2	37276993	.	TAA	T	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=-0.000;DP=49;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.75;ReadPosRankSum=0.893;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	37282421	rs138815251	GTTAT	G	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	37283844	rs6735749	G	A	572.78	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr2	37285528	rs140466535	ACT	A	1234.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr2	37285840	rs2706808	T	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	37287683	rs10191403	T	A	3105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-0.129;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:63,141:0.69:204
chr2	37296092	rs76447294	A	G	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:70,123:0.64:193
chr2	37297285	rs143933017	T	C	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr2	37297306	rs144268682	A	G	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:50,106:0.68:156
chr2	37299145	rs12621276	G	A	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr2	37302556	rs34545380	GA	G	2171.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.94;ReadPosRankSum=1.558;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:1,98:0.99:99
chr2	37306340	rs6758981	T	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=1.354;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:15,33:0.69:48
chr2	37306343	rs6743906	G	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.42;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	37310651	rs78468475	C	T	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr2	37315648	rs148156073	G	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	37316717	.	TAA	T	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=1.551;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr2	37317869	rs4670654	C	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	37318041	rs4670655	A	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	37319156	rs62621388	A	C	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:38,76:0.67:114
chr2	37319223	rs74474978	T	C	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:54,96:0.64:150
chr2	37319495	rs202239979	TTATA	T	912.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.35;ReadPosRankSum=-0.206;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr2	37319541	rs200303273	AT	A	455.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	37323427	rs56020915	A	G	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr2	37373982	rs2307475	A	AT	5498.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	37447473	rs57004489	T	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.34;ReadPosRankSum=-0.349;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	37456032	rs2098386	C	T	4064.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:53,169:0.76:222
chr2	37487334	.	G	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.941;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:86,39:0.31:125
chr2	37543371	rs6544066	A	G	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-2.381;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:76,43:0.36:119
chr2	38177758	.	T	C	860.77	.	AC=1;AF=0.500;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	0/1:85,41:0.33:126
chr2	38178362	rs2197561	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,37:0.36:102
chr2	38179134	rs4670800	G	A	17824.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr2	38202502	rs2044447	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	38208233	rs1446297	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	38216766	.	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.542;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.145;QD=0.39;ReadPosRankSum=1.991;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:130,25:0.16:155
chr2	38218281	rs17021813	T	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr2	38244417	rs114342890	G	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=1.741;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr2	38244818	rs11901988	A	C	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-0.337;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr2	38244824	rs11891536	G	A	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.54;ReadPosRankSum=-1.267;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:54,30:0.36:84
chr2	38298139	rs1800440	T	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=4.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.650;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:118,35:0.23:153
chr2	38298150	rs1056837	A	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=4.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.484;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:120,39:0.25:159
chr2	38298203	rs1056836	C	G	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:130,51:0.28:181
chr2	38527397	rs369327955	ACT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.777;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:146,15:0.09:161
chr2	38546263	rs189535416	G	A	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:30,80:0.73:110
chr2	38829737	rs34376380	G	A	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.621;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:126,68:0.35:194
chr2	38916906	rs11687518	T	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr2	38975332	.	G	GT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.377;QD=2.48;ReadPosRankSum=0.046;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr2	38977371	rs3112183	C	T	6443.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr2	38977402	rs3134630	T	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	39006603	rs3112201	T	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	39025043	rs34252629	GA	G,GAA	483.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=1.453;SOR=1.255;set=HC	GT:AD:AF:DP	1/2:7,23,16:0.50,0.35:46
chr2	39025555	rs1530853	G	A	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:193,81:0.30:274
chr2	39025632	rs1530852	A	G	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr2	39030074	rs13029406	C	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=1.319;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:116,31:0.21:147
chr2	39040845	rs7419838	G	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr2	39042639	rs3112138	G	A	9322.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr2	39043388	rs140059191	G	C	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:22,62:0.74:84
chr2	39045885	rs10176932	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr2	39050019	rs3112146	G	T	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	39050061	rs34582261	AT	A	2705.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	39050141	rs3770681	A	C	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.661;QD=5.10;ReadPosRankSum=0.866;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:158,71:0.31:229
chr2	39055337	rs72797362	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr2	39065729	rs17494315	C	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr2	39075356	rs11124651	A	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	39082344	rs7598922	T	C	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:187,80:0.30:267
chr2	39088323	rs11893062	G	A	1989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.270;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.463;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:234,104:0.31:338
chr2	39090696	rs3099999	T	C	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	39117117	rs7565111	G	A	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:149,59:0.28:208
chr2	39117285	rs3112175	T	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr2	39162832	rs113718702	C	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,54:0.61:89
chr2	39164465	rs72916841	C	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.393;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	39181774	rs10706405	CT	C	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=1.828;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr2	39185048	rs422854	C	T	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	39187190	rs6755527	T	C	5894.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	39187519	rs958412	A	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	39193430	rs116007935	G	A	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=-0.222;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	39198966	rs2305516	A	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	39214821	rs2290445	A	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	39224351	rs1454223	G	T	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	39224615	rs5830551	G	GT	1380.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	39233500	rs7577088	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	39251375	rs10634554	T	TCAC	1243.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	39262068	rs10153761	C	T	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	39281730	rs997344	G	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	39406572	rs7566123	C	A	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	39440727	rs10196407	G	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	39452861	rs11124663	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	39479122	rs3770678	G	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	39494197	rs2302749	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	39494469	rs10865149	C	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	39507417	rs3755176	T	A	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	39514136	rs3755172	T	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	39514204	rs3755171	G	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	39526842	rs2111382	A	C	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	39542658	rs5830562	AT	A	190.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr2	39553271	rs3815594	A	G	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	39558928	rs6760382	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	39564620	rs1125839	C	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	39570427	rs3732053	T	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	39583446	rs8545	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	39944055	rs2540229	G	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr2	39982898	rs10688564	G	GAGTAT	586.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr2	39993167	rs4670959	T	C	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:38,95:0.71:133
chr2	39996254	rs75626275	A	G	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:228,103:0.31:331
chr2	40006430	rs12620957	A	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	40006442	rs35761077	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	40006488	rs145441522	A	AGGGAGAGGGAGAGGGAGAGG	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.75;ReadPosRankSum=-0.000;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	40342600	rs148215685	G	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:153,71:0.32:224
chr2	40392313	rs434725	G	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	40402064	rs6760003	A	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr2	40402275	rs6734847	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr2	40402602	rs10199306	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr2	40403104	rs106706	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,57:0.64:89
chr2	40564500	rs13406526	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr2	40564557	rs13406541	G	C	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.353;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:32,55:0.63:87
chr2	40564647	rs11893826	G	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=0.362;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr2	40564655	rs11893746	C	T	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=0.554;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr2	40655563	rs3838567	CCACA	C	623.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,24:0.30:79
chr2	42165754	rs10192292	C	T	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:31,75:0.71:106
chr2	42165961	rs7590930	T	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-0.112;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	42181051	rs3038317	GCA	G	171.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	42275664	rs187184761	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	42275819	rs11897440	T	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:39,87:0.69:126
chr2	42284884	rs1044305	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr2	42396722	rs7233	A	G	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	42472894	rs17671409	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr2	42491951	rs6735571	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr2	42510018	rs6736913	A	G	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	42515388	rs10202624	A	G	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	42515501	rs10179237	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr2	42544821	rs7558501	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr2	42552145	rs184214581	G	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	42552284	rs56315033	G	C	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:50,87:0.64:137
chr2	42552711	.	T	TTATA	98	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5003;HP=3;HapScore=2;MGOF=40;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=98;QD=35.6666666667;SC=ATGAATGATTTTATATATATA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=42552719;WS=42552701;set=Platypus	GT:AD:AF:DP	1/0:1,3:0.75:4
chr2	42560975	rs7572231	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	42579743	rs56851715	T	C	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:68,154:0.69:222
chr2	42719847	rs113015907	T	TG	11041.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr2	42719860	rs112592817	G	GC	12449.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	42795954	rs78106475	T	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	42836516	rs6720277	A	G	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,75:0.64:118
chr2	42922888	rs66547039	AT	A	459.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.674;QD=9.58;ReadPosRankSum=1.111;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:17,31:0.65:48
chr2	42931217	rs2304658	A	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr2	42935961	rs4953577	C	T	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=1.941;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:28,66:0.70:94
chr2	42935979	rs4953578	C	T	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,80:0.70:115
chr2	42990336	rs1992286	T	G	4052.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:72,156:0.68:228
chr2	42994642	.	G	A	2281.77	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:52,99:0.66:151
chr2	42995058	rs113019865	T	C	4948.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:123,217:0.64:340
chr2	42996709	rs35746707	ATGTGTGTGTG	A	861.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.92;ReadPosRankSum=-1.392;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr2	42996759	rs34567167	AAGAG	A	1455.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr2	42997614	rs2241850	G	A	3074.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:66,133:0.67:199
chr2	43011169	rs4953660	G	T	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr2	43015612	rs3816181	G	T	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:69,133:0.66:202
chr2	43015704	rs3816182	T	A	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:130,198:0.60:328
chr2	43015719	rs3816183	T	C	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:129,187:0.59:316
chr2	43015757	rs3816184	G	A	2986.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:104,137:0.57:241
chr2	43015902	rs3816185	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	43019730	rs2304656	A	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr2	43452183	rs7933	A	G	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.039;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:122,45:0.27:167
chr2	43453251	.	C	G	617.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr2	43514036	rs11900952	G	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr2	43660795	.	TTG	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=-0.279;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:125,14:0.10:139
chr2	43732590	rs114258346	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.824;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=1.596;SOR=0.067;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr2	43754992	rs1491508	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr2	43778857	rs34461850	GA	G	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.143;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	43779206	.	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=11.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.689;SOR=2.468;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr2	43787576	rs4337518	G	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr2	43793725	rs1158411	G	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr2	43793963	.	T	TA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.26;ReadPosRankSum=-0.896;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	43797619	rs17031056	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr2	43797710	rs11904510	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:57,21:0.27:78
chr2	43798792	rs11884742	G	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.269;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:69,27:0.28:96
chr2	43799070	rs3752355	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	43800174	rs11898207	A	G	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:120,51:0.30:171
chr2	43801712	rs11899823	A	G	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:311,135:0.30:446
chr2	43802261	rs970175	C	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	43804229	rs13021894	T	C	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:231,102:0.31:333
chr2	43817950	rs35899859	CT	C	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.218;QD=6.65;ReadPosRankSum=0.817;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:44,31:0.41:75
chr2	43871983	rs12105773	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:111,56:0.34:167
chr2	43902511	rs755862	G	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:87,35:0.29:122
chr2	43903066	rs3828297	A	G	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:280,149:0.35:429
chr2	43903354	rs4952675	T	C	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:266,131:0.33:397
chr2	43903483	rs4952995	T	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:95,53:0.36:148
chr2	43905876	.	A	G	82	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=19;MQ=56.12;NF=6;NR=2;PP=82;QD=14.5964015684;SC=TAGAGGTGGAAGTGGAGGTGG;SbPval=0.92;Source=Platypus;TC=23;TCF=13;TCR=10;TR=8;WE=43905884;WS=43905866;set=Platypus	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	43919934	rs17031284	G	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	43921489	rs12616572	A	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-2.869;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr2	43926943	rs7606783	T	A	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:172,103:0.37:275
chr2	43927459	rs12623703	C	G	4175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.358;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:619,245:0.28:864
chr2	43931176	rs4953002	T	C	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:257,134:0.34:391
chr2	43931321	rs4953003	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.870;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:92,30:0.25:122
chr2	43937500	rs17414174	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr2	43937723	.	C	CT	104.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.849;QD=4.77;ReadPosRankSum=0.675;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	43939525	rs13028613	A	G	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	43947944	rs17031344	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	43953664	rs7574334	A	G	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	43991357	rs7565517	A	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.179;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr2	44021489	.	T	C	260.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	44071625	rs4148209	C	A	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:176,98:0.36:274
chr2	44071639	rs4148210	C	T	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:191,103:0.35:294
chr2	44071743	rs4148211	A	G	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:188,106:0.36:294
chr2	44071833	rs4148212	A	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr2	44079004	rs4148214	T	C	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:136,79:0.37:215
chr2	44101214	rs10709506	CA	C	1255.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	44101430	rs4952689	T	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.906;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr2	44101538	rs28517482	C	T	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=5.526;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.035;QD=6.78;ReadPosRankSum=-0.691;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:144,88:0.38:232
chr2	44101649	rs10667526	G	GC	4058.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	44102491	rs4148221	C	T	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-1.128;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:211,69:0.25:280
chr2	44104610	rs10609687	ACT	A	105.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	44104925	rs6544718	T	C	8299.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr2	44116836	rs2955280	C	T	2873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=-1.792;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:88,135:0.61:223
chr2	44123672	rs3839036	TC	T	2485.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:34,71:0.68:105
chr2	44145374	rs7568481	G	T	3394.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:71,141:0.67:212
chr2	44152180	rs4952694	G	A	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:98,173:0.64:271
chr2	44161854	rs143170527	G	GA	604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.902;QD=9.91;ReadPosRankSum=0.472;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:24,37:0.61:61
chr2	44172444	rs28394191	A	C	4274.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:84,186:0.69:270
chr2	44173422	rs7594526	T	G	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,79:0.69:115
chr2	44175366	rs72877186	A	C	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:43,80:0.65:123
chr2	44177560	rs59338949	C	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	44177701	rs58811869	G	C	2823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-0.720;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:59,132:0.69:191
chr2	44186498	rs11893433	A	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr2	44187829	rs10190161	A	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr2	44201259	rs7593842	T	C	3697.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:57,156:0.73:213
chr2	44202426	rs17031786	A	G	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr2	44209477	rs6741066	C	T	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	44445604	.	G	GT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=1.066;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:77,16:0.17:93
chr2	44502788	rs3738985	A	C	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr2	44508835	rs11124986	G	A	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	44512971	rs3768919	G	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	44531484	rs3738984	C	T	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	44545234	rs11348872	GT	G	1272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.733;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.016;QD=10.52;ReadPosRankSum=1.443;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:34,87:0.72:121
chr2	44547574	rs698761	G	A	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	44547909	rs8886	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	44548613	rs2241871	T	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	44549735	rs77212913	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr2	44556298	rs2033951	T	C	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	44565447	rs2289463	A	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	44569474	rs2304769	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	44569700	rs61004197	AAAT	A	3276.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	44569739	rs11421998	T	TA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-0.493;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	44570776	rs17580226	C	T	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	44570804	rs12053381	C	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	44573624	rs698763	G	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	44573658	rs698764	T	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	44573671	rs698765	G	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	44617324	rs1085486	T	A	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	44622256	rs1067342	A	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	44858687	rs10191477	T	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	44942384	rs343957	C	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.981;SOR=1.263;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr2	45170153	rs4953152	G	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,47:0.81:58
chr2	45171842	rs338074	A	G	14930.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr2	45715298	rs184384277	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr2	45715556	rs67396287	G	GAA	1502.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.83;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	45774548	rs1865685	A	C	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	45806963	rs374392017	TA	T	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.747;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:84,34:0.29:118
chr2	45829286	rs12998864	A	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	45879610	rs637909	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr2	46203796	rs2278786	G	A,C	3474.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=130;set=Intersection	GT:AF:DP	1/2:0.63,0.37:130
chr2	46207618	rs7557421	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr2	46228391	rs61190862	C	CAT	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.786;QD=3.57;ReadPosRankSum=-0.993;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:59,16:0.21:75
chr2	46234568	rs10188306	A	G	1772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-0.086;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:214,107:0.33:321
chr2	46372174	rs10495929	G	A	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,76:0.67:114
chr2	46372411	rs12990867	G	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr2	46378377	rs61759987	C	T	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.209;QD=12.02;ReadPosRankSum=2.019;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:67,91:0.58:158
chr2	46378464	.	T	A	42.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=23.015;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.085;QD=3.05;ReadPosRankSum=-2.489;SOR=3.220;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	46378465	.	C	CACACA	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=23.015;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.085;QD=2.41;ReadPosRankSum=-2.631;SOR=3.220;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	46583235	rs6743991	C	A	506.78	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr2	46583277	.	C	CCG	1387	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=9;HapScore=1;MGOF=24;MMLQ=24;MQ=60.0;NF=11;NR=8;PP=1387;QD=73.6315789474;SC=GTCCCACCCCCCCCCCTTTCC;SbPval=0.46;Source=Platypus;TC=26;TCF=16;TCR=10;TR=19;WE=46583289;WS=46583267;set=Platypus	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	46583278	rs61586942	C	CG	1522.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=11.461;MLEAC=2;MLEAF=1.000;MQ=60.57;MQRankSum=0.435;QD=42.30;ReadPosRankSum=2.039;SOR=2.209;set=HC	GT:AD:AF:DP	1/1:2,34:0.94:36
chr2	46583279	.	CCC	TCT	1350	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=9;HapScore=1;MGOF=24;MMLQ=24;MQ=60.26;NF=17;NR=8;PP=1350;QD=56.1387149945;SC=CCCACCCCCCCCCCTTTCCAG;SbPval=0.37;Source=Platypus;TC=37;TCF=27;TCR=10;TR=25;WE=46583289;WS=46583267;set=Platypus	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	46583279	rs142684263	C	CT	1555.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=11.703;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.359;QD=42.05;ReadPosRankSum=1.949;SOR=2.281;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr2	46583281	rs75984373	C	T	1539.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=11.937;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.52;ReadPosRankSum=1.799;SOR=2.351;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr2	46583593	rs2278753	G	A	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr2	46602722	rs7567582	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	46603671	rs7557402	C	G	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	46605659	rs7571218	A	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	46605954	rs7598371	G	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	46608542	rs13006131	C	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	46707808	.	C	CAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGGG	3255.73	.	AC=2;AF=1.00;AN=2;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=58.14;SOR=2.221;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	46739157	rs3814045	A	G	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	46771134	rs6714484	G	C	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	46799852	rs1451153	G	T	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr2	46818992	rs17818315	C	T	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr2	46819815	rs2305350	A	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	46839477	rs1824050	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.05;ReadPosRankSum=1.095;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	46840680	rs4952836	T	A	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	46840735	rs3213985	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.655;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	46842410	rs2242033	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	46844247	rs113423551	G	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	46845849	rs2122715	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr2	46851180	rs11333819	AT	A	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.12;ReadPosRankSum=-1.614;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	46851183	rs56198684	T	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.92;ReadPosRankSum=-2.305;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	46986416	rs6738426	A	G	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:106,159:0.60:265
chr2	46987300	rs3768720	T	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr2	47044277	rs2289930	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr2	47045267	rs2289931	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr2	47045309	rs2289933	C	T	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:122,60:0.33:182
chr2	47045321	rs17773492	A	G	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:137,71:0.34:208
chr2	47049409	rs2278715	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr2	47049453	rs1053952	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr2	47081092	rs11687883	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	47081196	rs61507430	C	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=25.00;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	47083030	rs3835756	ATG	A	1234.74	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:3,41:0.93:44
chr2	47083041	rs200683836	TA	T	2587.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.11;QD=44.62;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	47083044	rs1079	A	T	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.11;QD=44.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	47085398	rs2278711	C	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	47177617	rs61738825	C	T	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:69,129:0.65:198
chr2	47250819	rs12988535	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	47251555	rs72872958	G	T	3845.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:129,178:0.58:307
chr2	47251634	rs6713052	T	C	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:82,107:0.57:189
chr2	47314052	rs1474394	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	47348347	rs1880583	C	T	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:51,89:0.64:140
chr2	47357458	rs58184321	A	G	4852.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:90,213:0.70:303
chr2	47357564	rs59073987	A	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr2	47380203	rs815809	T	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	47382214	rs815806	C	G	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	47382342	rs815804	G	T	5607.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:118,253:0.68:371
chr2	47387989	rs370967655	CAAAAA	C	142.27	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=20.32;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr2	47596365	.	G	C	142.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr2	47601106	rs1126497	T	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:126,88:0.41:214
chr2	47612224	rs7584256	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr2	47613870	rs1421	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.354;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.380;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr2	47630213	rs2303425	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.23;ReadPosRankSum=-1.142;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	47630550	rs2303426	C	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.625;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr2	47656801	rs2347794	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr2	47672569	rs1981929	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	47690404	rs3771278	T	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=0.529;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr2	47690408	rs3771279	A	G	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-0.047;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr2	47690411	rs3771280	T	C	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=-0.501;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr2	47693706	rs3732182	G	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.133;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr2	47693788	rs12998837	A	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-1.187;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr2	47693959	rs3732183	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	47702451	.	G	GT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=2.181;QD=3.47;ReadPosRankSum=-2.397;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr2	47739551	rs2303424	A	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.076;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:58,31:0.35:89
chr2	47748292	rs2278139	A	G	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=4.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=1.001;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:111,43:0.28:154
chr2	48010488	rs1042821	G	A	4182.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:109,181:0.62:290
chr2	48022900	rs3136316	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	48022981	rs1800934	G	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr2	48030458	rs2072447	G	C	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	48030838	rs2020911	A	T	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-1.491;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:107,34:0.24:141
chr2	48032740	rs267608104	A	AT	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-0.443;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:41,38:0.48:79
chr2	48032874	rs2234731	ACTAT	A	2790.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	48032937	rs3136359	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	48033551	rs3136367	C	G	10148.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	48033890	rs267608137	CT	C	1339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.016;QD=8.32;ReadPosRankSum=0.446;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:51,110:0.68:161
chr2	48040285	rs3732191	A	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr2	48040564	.	A	ATTTTTTTTTT	38.86	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr2	48040904	rs373765859	G	GA	4844.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	48046012	rs374445177	TA	T	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=2.656;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:173,43:0.20:216
chr2	48132541	.	CCCCG	C	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.98;ReadPosRankSum=-0.893;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	48586409	rs137947879	ATTTAGTT	A	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.672;QD=6.18;ReadPosRankSum=-0.609;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr2	48589683	rs34242257	G	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr2	48602252	rs17855177	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:207,112:0.35:319
chr2	48688258	rs376347710	AT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.677;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr2	48713729	rs72822226	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr2	48722755	rs4443044	T	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr2	48725610	rs3811519	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	48732670	rs115134303	C	T	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:190,87:0.31:277
chr2	48734576	rs6716341	G	A	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	48738687	rs4528813	G	C	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:43,73:0.63:116
chr2	48756682	rs34461314	C	G	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.406;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:65,26:0.29:91
chr2	48807796	rs17039250	A	C	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:194,113:0.37:307
chr2	48807976	rs3828340	T	C	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:285,142:0.33:427
chr2	48808152	rs940389	G	C	2178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=5.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.786;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:290,117:0.29:407
chr2	48808594	rs3749142	C	T	12496.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr2	48808882	rs3749144	T	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:84,36:0.30:120
chr2	48808898	rs3749145	C	T	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:80,37:0.32:117
chr2	48809593	rs3792234	G	T	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	48809756	rs3792235	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr2	48822381	rs2140551	G	A	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:41,94:0.70:135
chr2	48822540	rs7574549	T	C	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:89,36:0.29:125
chr2	48844968	rs2293269	C	G	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	48845247	rs55957451	A	G	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr2	48847918	rs10634616	G	GAATA,GAATAAATA	832.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=19;set=Intersection	GT:AF:DP	1/2:0.65,0.35:17
chr2	48848515	rs17037472	G	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr2	48872113	rs34156631	A	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr2	48873582	rs12988176	C	T	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:32,63:0.66:95
chr2	48898798	rs3920390	T	A	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	48906625	rs1965508	T	C	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	48915871	rs11125179	A	G	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:203,93:0.31:296
chr2	48921375	rs2293275	T	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr2	48925746	rs6755901	C	T	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	48925986	rs70946824	AT	A	577.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.365;QD=18.64;ReadPosRankSum=1.120;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr2	48952701	rs6545063	C	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	48956431	rs11892719	T	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr2	48960123	rs148416853	GATGGCAT	G	5997.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:93,151:0.62:244
chr2	48982755	.	G	GGCTGCA	580.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	49189921	rs6166	C	T	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:41,115:0.74:156
chr2	49191041	rs6165	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr2	49215977	rs2072488	G	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	49216284	rs2072487	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	49217916	rs2072486	T	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	49241849	rs6708637	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr2	50148972	rs1045881	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr2	50201110	rs9636391	A	G	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	50280283	rs1363050	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	50280338	rs1363049	G	A	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr2	50434741	rs17040210	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	50434759	rs1715984	C	G	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	50540027	rs10203511	A	G	229.88	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr2	50574038	rs13413205	C	A	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-1.263;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:78,45:0.37:123
chr2	50692459	rs12713101	T	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	50692560	rs3213756	A	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:33,88:0.73:121
chr2	50692819	rs10168838	T	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	50693504	rs75315267	AAC	A	2777.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	50699305	rs2075234	T	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	50733545	rs13008919	G	T	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=0.808;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:36,83:0.70:119
chr2	50733860	rs7584062	A	G	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	50758657	rs2066948	T	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	50780219	rs13429627	T	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr2	50858107	rs961405	T	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr2	50966283	rs1546667	C	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	51148872	rs36106628	T	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-1.124;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	51206342	rs35296842	C	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:84,44:0.34:128
chr2	53920931	rs7563054	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr2	53921270	rs3731970	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr2	53955850	rs17521008	C	T	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:98,50:0.34:148
chr2	53994929	rs62137612	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr2	54023247	rs72502136	GT	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.849;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr2	54024626	rs2692514	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr2	54024957	rs2949813	C	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr2	54035374	rs2692519	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr2	54035447	rs1127362	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:104,57:0.35:161
chr2	54041983	rs2542571	G	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr2	54114967	rs805399	G	A	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:106,57:0.35:163
chr2	54115904	rs805400	A	G	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=1.498;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:152,54:0.26:206
chr2	54116003	rs805401	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-3.218;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:75,28:0.27:103
chr2	54120025	rs805408	A	T	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.188;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:142,40:0.22:182
chr2	54120204	rs805409	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	54120820	rs805412	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.524;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr2	54122956	rs698856	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr2	54122984	rs698857	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr2	54125258	rs805416	T	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.999;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.093;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr2	54125495	rs805417	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr2	54127041	rs805423	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.229;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:75,24:0.24:99
chr2	54133744	rs805316	T	C	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=4.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-2.836;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:131,49:0.27:180
chr2	54135429	rs805319	G	C	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.962;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:46,16:0.26:62
chr2	54144448	rs805325	T	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-1.543;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	54152927	rs2302879	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr2	54155240	rs805349	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:106,54:0.34:160
chr2	54158957	rs805352	C	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.148;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.182;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:102,28:0.22:130
chr2	54161885	rs805357	G	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,40:0.39:103
chr2	54343012	rs7573491	C	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr2	54369120	.	TTG	T	214.73	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr2	54482703	rs76397255	GGGGCCC	G	6354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=17.652;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=3.767;QD=21.99;ReadPosRankSum=4.379;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:123,166:0.57:289
chr2	54482989	rs6740641	C	T	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:382,222:0.37:604
chr2	54494370	rs865816	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	54494448	rs1817557	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.544;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:58,36:0.38:94
chr2	54587596	rs2280718	C	T	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	54587659	rs13184	G	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr2	54608883	rs11677654	C	A	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr2	54839276	rs3796014	A	G	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:74,188:0.72:262
chr2	54844926	rs7569127	T	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr2	54848494	rs151162357	A	ACC	2200.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,54:0.62:87
chr2	54848495	rs368638007	G	C	2209.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,57:0.63:91
chr2	54848728	rs12713274	A	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr2	54855137	rs2971887	T	C	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:32,87:0.73:119
chr2	54855454	rs17046036	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr2	54858214	rs61730127	A	G	4527.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:84,195:0.70:279
chr2	54858664	rs2229503	C	T	4915.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:114,211:0.65:325
chr2	54877146	rs3739109	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr2	54882381	rs2271329	G	A	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:86,145:0.63:231
chr2	54884870	rs966003	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	55040426	rs2631840	A	G	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	55071101	rs72020199	TTG	T	440.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.183;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.474;QD=20.04;ReadPosRankSum=1.486;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr2	55077061	rs12713278	A	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	55080703	rs35619447	A	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	55093842	rs1961245	G	A	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	55121930	rs998230	C	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr2	55121996	rs2165007	G	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:103,62:0.38:165
chr2	55122589	rs6545454	A	G	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:113,166:0.59:279
chr2	55176112	rs13394146	C	T	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:66,145:0.69:211
chr2	55180965	rs4671998	G	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	55181022	rs34371058	T	TA	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.347;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:64,35:0.35:99
chr2	55186229	rs12623902	T	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr2	55186394	rs17346629	A	C	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.635;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chr2	55187297	rs58866010	A	AG	2505.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	55193888	rs114435610	C	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.256;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:106,30:0.22:136
chr2	55195768	rs114778157	G	C	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=2.072;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:116,48:0.29:164
chr2	55201038	rs2255026	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	55214618	rs2580769	A	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	55214912	rs2580770	C	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	55252214	rs13401937	T	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr2	55405037	rs75442422	T	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	55407754	rs6716066	C	T	9917.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr2	55407935	rs10183953	G	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	55439963	rs2118283	C	A	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	55449318	rs4435493	T	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	55449412	rs74785222	C	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:141,66:0.32:207
chr2	55449464	rs17852670	T	C	7062.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,255:1.00:256
chr2	55460284	rs150005663	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr2	55471382	rs61109509	T	C	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	55471407	rs2589083	T	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	55473681	rs2589081	A	C	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	55518742	rs2249856	T	C	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	55522422	rs2589110	A	G	7251.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	55527108	rs1545121	G	A	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	55528257	rs2576699	A	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	55528514	rs2589117	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	55559971	rs77124524	T	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-1.688;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	55576634	rs2589090	C	T	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=5.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.551;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:164,84:0.34:248
chr2	55582601	rs5831355	T	TTTGACACA	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:37,9:0.20:46
chr2	55582635	rs2589104	T	C	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:62,29:0.32:91
chr2	55582684	rs1437394	A	T	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:120,56:0.32:176
chr2	55589434	rs3111412	T	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:88,54:0.38:142
chr2	55599655	rs3111411	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:25,64:0.72:89
chr2	55749085	rs12992408	T	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	55760842	rs34764925	A	AT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.000;QD=12.98;ReadPosRankSum=0.478;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	55760844	rs9808405	A	T	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.000;QD=20.69;ReadPosRankSum=0.995;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	55760940	rs4671248	G	T	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	55762957	rs3762513	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	55764754	rs11280083	AATATGAATAC	A	1795.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr2	55765882	.	C	CT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.046;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:126,27:0.18:153
chr2	55771050	rs3816489	C	G	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	55771161	rs1045910	A	G	9114.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr2	55804281	rs3791654	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	55805440	rs2903704	T	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	55805584	rs75949366	A	G	156.78	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	55806912	rs35232864	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:42,12:0.22:54
chr2	55806924	rs67834644	CAT	C	380.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr2	55808969	rs1975486	C	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	55812061	rs4312532	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:85,52:0.38:137
chr2	55812073	rs7594279	T	G	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:64,98:0.60:162
chr2	55831288	rs138452178	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	55844445	rs782594	T	C	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,69:0.68:102
chr2	55863360	rs35916020	T	TA	437.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr2	55871932	rs71393504	AT	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.798;QD=0.85;ReadPosRankSum=0.579;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr2	55873301	rs2627776	T	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr2	55873385	rs7584120	C	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr2	55874657	.	A	AT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.111;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr2	55883317	rs2627765	G	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr2	55889062	rs782604	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	55894247	rs782637	T	C	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	55898290	rs782632	C	G	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	55898929	rs2627771	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	55898929	.	AC	GT	116	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=0.5001;HP=3;HapScore=3;MGOF=3;MMLQ=24;MQ=60.0;NF=6;NR=2;PP=116;QD=21.1834843578;SC=GCCACTGCACACCAGCCTGGG;SbPval=0.62;Source=Platypus;TC=12;TCF=9;TCR=3;TR=8;WE=55898938;WS=55898919;set=Platypus	GT:AD:AF:DP	1/1:4,8:0.67:12
chr2	55898930	rs2627772	C	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.81;ReadPosRankSum=-0.705;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	55899228	rs782631	A	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	55900283	rs782629	A	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	55912120	rs782572	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	55914573	rs11386711	C	CA	59.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	55914621	rs809732	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	56094201	rs200536754	GA	G	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr2	56102019	rs55778215	T	C	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=11.043;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.306;QD=7.21;ReadPosRankSum=-0.995;SOR=0.158;set=HC	GT:AD:AF:DP	0/1:56,34:0.38:90
chr2	56102061	rs56280335	GA	G	905.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:125,68:0.35:193
chr2	56102260	rs55673402	G	GAT	970.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr2	56102281	rs55867135	T	C	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.374;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr2	56103682	rs17047287	T	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:72,30:0.29:102
chr2	56108689	rs11680866	G	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-0.078;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr2	56108692	rs56237919	T	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.039;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr2	56108882	rs3748959	T	C	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=4.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=1.419;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:130,71:0.35:201
chr2	56144930	rs14282	T	C	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:227,141:0.38:368
chr2	56216052	rs10865292	G	A	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr2	56411817	rs35587531	C	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	56420006	rs60028731	A	T	4343.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:424,216:0.34:640
chr2	56420296	rs75743618	C	T	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:305,151:0.33:456
chr2	56603118	rs72803075	C	G	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:58,125:0.68:183
chr2	56611386	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=-1.200;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:140,27:0.16:167
chr2	58275666	rs986512	G	A	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	58316814	rs1051061	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr2	58362161	rs11678320	G	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr2	58362181	.	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-2.415;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:89,12:0.12:101
chr2	58387000	rs3732136	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr2	58388696	rs848291	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr2	58390538	rs10445895	T	C	4569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=0.402;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:64,114:0.64:178
chr2	58390547	rs10445896	G	A	4767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.70;ReadPosRankSum=0.050;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:69,124:0.64:193
chr2	58453843	.	GA	G	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.608;QD=1.45;ReadPosRankSum=-1.033;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr2	58453930	rs79588315	A	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr2	58456755	rs56246409	A	G	163.28	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr2	60614572	rs243080	G	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	60679942	rs17331129	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr2	60687959	rs7569946	A	G	9054.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr2	60768978	rs2665668	G	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	60773035	rs45579331	T	G	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:35,116:0.77:151
chr2	60996116	rs62149379	A	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	60997770	rs10187671	T	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	61007782	rs10496089	A	G	3338.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:53,133:0.72:186
chr2	61007986	rs17538295	T	C	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:42,105:0.71:147
chr2	61008036	rs3845814	C	T	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	61009909	rs10197672	C	T	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.195;QD=14.67;ReadPosRankSum=0.181;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:22,49:0.69:71
chr2	61009938	rs139543059	AT	A	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.291;QD=8.47;ReadPosRankSum=0.373;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr2	61021349	rs11125855	A	G	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr2	61121492	rs842644	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	61128284	rs2115592	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-0.431;QD=11.40;ReadPosRankSum=-0.473;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	61175312	rs12479056	T	C	4861.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:84,205:0.71:289
chr2	61245551	rs12996059	G	C	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr2	61245604	rs70959887	AT	A	266.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	61349446	rs1177284	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	61389609	rs17006627	G	C	2470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=1.615;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:81,120:0.60:201
chr2	61412559	rs777585	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr2	61413092	rs67060712	AATAAC	A	1120.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr2	61413723	rs1809028	A	G	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	61417617	rs777591	A	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:97,41:0.30:138
chr2	61450454	rs2123111	A	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	61456610	.	AC	A	386.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-0.744;QD=11.72;ReadPosRankSum=2.116;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	61456612	.	AAAAAAAAAAAAC	A	338.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-0.571;QD=6.64;ReadPosRankSum=1.845;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr2	61468991	rs77445405	A	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	61475577	rs34823499	A	G	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	61483715	rs68101593	A	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=14.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=0.949;SOR=5.421;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	61483725	rs72811484	T	A	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.276;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=7.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=0.078;SOR=4.615;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr2	61484556	rs2060824	T	C	461.10	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr2	61522047	rs35292974	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	61522123	rs13014347	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	61528299	rs11428092	T	TA	1668.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:25,78:0.76:103
chr2	61538602	rs141750762	G	GAAAAGAGAAAGAAAAAGAAAA	1033.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.203;QD=31.33;ReadPosRankSum=0.019;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr2	61538613	.	G	GAAAA	603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-0.879;QD=11.61;ReadPosRankSum=-0.061;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr2	61538615	rs67180224	G	GAAAAA	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=0.806;QD=11.53;ReadPosRankSum=-0.501;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr2	61552379	.	A	AT	129	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=28;MQ=60.0;NF=5;NR=0;PP=129;QD=32.8;SC=ACAAACATACATGTGCCCACT;SbPval=1.0;Source=Platypus;TC=8;TCF=5;TCR=3;TR=5;WE=61552387;WS=61552369;set=Platypus	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	61552411	.	T	TA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.60;ReadPosRankSum=-0.309;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	61552484	rs2593624	T	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.12;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	61570886	rs72381726	AAAGT	A	1564.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr2	61575308	rs6722430	A	G	9791.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	61576517	rs811378	G	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	61577435	rs2166720	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr2	61577667	.	G	GA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.559;QD=1.66;ReadPosRankSum=-0.203;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr2	61605614	rs10208769	T	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	61607510	rs988911	G	A	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.102;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:174,61:0.26:235
chr2	61647901	rs778155	A	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=2.013;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:23,45:0.66:68
chr2	61648932	rs778156	A	G	722.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=-1.354;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:15,33:0.69:48
chr2	61648932	.	AC	GC	605	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=7,28;NR=0,7;PP=133,605;QD=19.5714285714;SC=ACACACACACACGCGCGCGCG;SbPval=1.0;Source=Platypus;TC=39;TCF=30;TCR=9;TR=7,35;WE=61648940;WS=61648922;set=Platypus	GT:AD:AF:DP	0/1:10,35:0.78:45
chr2	61648932	.	AC	ACACGC	605	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=7,28;NR=0,7;PP=133,605;QD=19.5714285714;SC=ACACACACACACGCGCGCGCG;SbPval=1.0;Source=Platypus;TC=39;TCF=30;TCR=9;TR=7,35;WE=61648940;WS=61648922;set=Platypus	GT:AD:AF:DP	0/1:32,7:0.18:39
chr2	61709732	.	GTT	G	230.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	61722519	rs74392163	G	GA	68.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	61729258	rs2305155	A	G	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-1.521;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr2	61729268	rs2305156	T	C	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=0.255;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:59,33:0.36:92
chr2	61749690	rs3732171	C	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.391;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:84,28:0.25:112
chr2	61749716	rs3732170	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.004;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:92,35:0.28:127
chr2	61760814	rs115819167	C	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr2	61761169	rs1446532	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	62053878	rs11392751	G	GA	102.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	62063093	rs11299120	TA	T	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.768;QD=4.48;ReadPosRankSum=1.038;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr2	62066927	rs4672457	A	G	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:77,143:0.65:220
chr2	62069528	rs11125896	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr2	62073918	rs58256183	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr2	62074140	rs113296637	A	AAC	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	62081012	rs4270331	A	C	9048.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:195,415:0.68:610
chr2	62081217	rs1881616	A	G	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr2	62095994	rs4672463	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	62104343	rs7571143	C	T	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr2	62104660	rs11371205	T	TA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.856;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr2	62107376	rs5831625	T	TC	1612.79	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:5,49:0.91:54
chr2	62107632	rs2272429	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr2	62110551	rs57068738	CA	C	165.84	.	AC=1;AF=0.500;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=68.43;QD=33.17;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:0,5:1.00:5
chr2	62110570	.	AG	TG	122	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000,0.5000;HP=18;HapScore=4;MGOF=6;MMLQ=28;MQ=65.19;NF=2,3;NR=3,2;PP=122,87;QD=25.0;SC=AAAAAAAAAAAGACTCACCTA;SbPval=0.5;Source=Platypus;TC=8;TCF=4;TCR=4;TR=5,5;WE=62110578;WS=62110560;set=Platypus	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	62110570	.	AG	A	122	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000,0.5000;HP=18;HapScore=4;MGOF=6;MMLQ=28;MQ=65.19;NF=2,3;NR=3,2;PP=122,87;QD=25.0;SC=AAAAAAAAAAAGACTCACCTA;SbPval=0.5;Source=Platypus;TC=8;TCF=4;TCR=4;TR=5,5;WE=62110578;WS=62110560;set=Platypus	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	62110571	rs12713451	G	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=67.29;MQRankSum=1.981;QD=24.54;ReadPosRankSum=1.981;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	62112221	rs11429418	G	GA	1705.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:107,109:0.50:216
chr2	62112222	.	GA	G,AA	7196.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=30.89;SOR=1.025;set=HC	GT:AD:AF:DP	1/2:0,91,142:0.39,0.61:233
chr2	62282474	rs13020801	G	A	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	62362995	rs9096	T	C	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	62729674	rs4672527	T	C	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	62729747	rs11443505	G	GA	3553.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	62733253	rs11676567	C	T	4167.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:71,177:0.71:248
chr2	62738883	rs6757222	C	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,76:0.64:119
chr2	62738931	rs6757448	G	C	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:57,99:0.63:156
chr2	62739135	rs4405748	A	C	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	63086523	rs78858847	A	C	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr2	63170905	rs75746135	A	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr2	63176139	rs17432615	A	C	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:91,128:0.58:219
chr2	63380809	rs7595595	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	63401820	rs61734468	T	C	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr2	63401973	rs2421862	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr2	63457026	.	GA	G	42.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=1.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	63540324	rs1517403	A	G	4611.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:115,196:0.63:311
chr2	63540523	rs1517402	A	T	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr2	63605772	rs2292794	A	G	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	63609017	rs2138796	A	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr2	63631889	rs4671501	A	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	63631921	rs4671502	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	63719887	rs17617855	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr2	63720210	rs7563623	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	63798333	rs4671068	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr2	63815206	rs1109027	A	G	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr2	63816672	rs10469944	C	G	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr2	63822785	rs2305157	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	63826528	rs7606045	T	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr2	64069311	rs4671534	G	C	2891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-2.097;QD=15.30;ReadPosRankSum=-0.181;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:59,130:0.69:189
chr2	64069732	rs6546029	G	A	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	64082619	rs34900788	G	C	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.091;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.621;QD=16.37;ReadPosRankSum=-0.621;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:11,34:0.76:45
chr2	64082721	rs13028805	G	A	49.79	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	64084005	rs35253921	G	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:57,93:0.62:150
chr2	64084098	rs35552326	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr2	64085114	rs10183479	G	A	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	64117423	.	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.16;ReadPosRankSum=-0.595;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	64117425	.	G	T	298.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.744;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.16;ReadPosRankSum=-0.595;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	64117426	.	C	A	298.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.744;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.16;ReadPosRankSum=-0.595;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	64117428	rs201713347	AC	A	289.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	64117431	.	T	TAG	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.34;ReadPosRankSum=0.708;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	64118158	rs11433092	T	TA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.170;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr2	64124440	rs34502946	TAA	T	608.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	64126765	rs3815616	A	G	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr2	64126775	rs78227932	C	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:66,27:0.29:93
chr2	64139901	rs2302809	A	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	64140301	rs10207847	A	T	2094.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=-0.402;SOR=0.404;set=HC	GT:AD:AF:DP	1/1:1,80:0.99:81
chr2	64143884	rs13027117	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	64195997	rs200094653	CA	C,CAA	336.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.535;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-1.480;SOR=0.407;set=HC	GT:AD:AF:DP	1/2:8,17,16:0.41,0.39:41
chr2	64196057	.	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=0.109;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr2	64210979	.	CA	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-1.293;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:103,24:0.19:127
chr2	64327544	rs329498	G	T	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:101,237:0.70:338
chr2	64327592	rs329497	T	C	5434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=1.518;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:124,250:0.67:374
chr2	64331815	.	CT	C	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=1.140;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:49,44:0.47:93
chr2	64682364	rs3770741	A	C	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	64778662	rs35894006	T	C	2080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-0.665;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:148,110:0.43:258
chr2	64794945	rs7598893	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	64796479	rs6546087	C	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	64796847	rs2287532	A	G	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	64796932	rs2287533	G	A	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	64799937	rs147232569	TAA	T	1301.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr2	64819249	rs35699964	T	TAAA	800.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.898;QD=14.83;ReadPosRankSum=0.083;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:20,34:0.63:54
chr2	65131511	rs13027905	A	G	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.484;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:108,45:0.29:153
chr2	65131523	rs12623286	A	T	2697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.537;QD=16.86;ReadPosRankSum=0.407;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:47,113:0.71:160
chr2	65131732	rs735473	G	A	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr2	65132050	rs78893802	G	A	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:89,108:0.55:197
chr2	65132099	rs4140738	G	A	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:166,112:0.40:278
chr2	65159596	rs1035165	G	A	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr2	65200618	rs4671636	C	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr2	65217089	rs7559202	G	C	4153.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:92,179:0.66:271
chr2	65245365	rs759458	G	A	8604.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	65296798	rs7572857	G	A	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	65298839	rs17849707	A	G	9117.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr2	65309878	rs112961707	C	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	65325265	rs76210337	A	G	465.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=1.834;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr2	65341374	rs17029863	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	65473930	rs58944514	AAAATTTTC	A	943.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr2	65478371	rs7574628	T	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr2	65481008	rs268871	A	C	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:90,42:0.32:132
chr2	65488538	rs268862	G	A	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-1.530;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:78,45:0.37:123
chr2	65495570	rs55843720	A	C	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.408;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr2	65495570	.	AT	CC	1571	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=22;MQ=60.0;NF=18;NR=4;PP=1571;QD=73.8394488574;SC=GGTACCAAATATTACGTTCTA;SbPval=0.72;Source=Platypus;TC=77;TCF=60;TCR=17;TR=22;WE=65495581;WS=65495560;set=Platypus	GT:AD:AF:DP	0/1:55,22:0.29:77
chr2	65495571	rs60931828	T	C	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.973;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.491;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr2	65495573	rs72536103	A	AC	952.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,28:0.32:87
chr2	65495887	rs268875	G	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:210,95:0.31:305
chr2	65496018	rs11424	C	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr2	65540905	rs8827	C	G	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:314,159:0.34:473
chr2	65559027	rs2271198	A	G	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=3.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.121;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:174,54:0.24:228
chr2	65561392	rs4671658	C	T	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:385,190:0.33:575
chr2	65604914	rs268120	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	66794834	rs1000756	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	66798282	rs2861108	G	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	67624799	rs76623705	C	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	67630980	rs3770657	G	A	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:35,101:0.74:136
chr2	67632125	rs3770655	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr2	67637196	rs1569	G	A	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	68272883	rs72821819	G	A	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	68352515	rs6742154	A	C	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:81,161:0.67:242
chr2	68358341	rs62145930	T	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr2	68358653	rs17035004	T	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=18.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-1.790;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr2	68385097	rs2044693	A	G	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:91,164:0.64:255
chr2	68388823	rs1137930	A	G	3671.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:76,167:0.69:243
chr2	68389276	rs11402583	G	GA	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-1.699;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr2	68389481	rs3217588	CTT	C	6843.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:87,177:0.67:264
chr2	68415767	rs687	G	A	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:62,165:0.73:227
chr2	68444171	rs374427852	C	CACGCAG	2932.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,77:0.64:121
chr2	68483396	rs7593613	A	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr2	68511506	rs5831925	GA	G	527.87	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:4,31:0.89:35
chr2	68511584	rs735815	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	68546304	rs4671897	T	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	68546374	rs4671898	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	68546449	rs13025842	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	68592584	rs880668	T	C	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:139,63:0.31:202
chr2	68613710	rs2070171	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:88,40:0.31:128
chr2	68615654	rs2241946	T	C	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:186,82:0.31:268
chr2	68620410	rs17602092	T	A	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:168,86:0.34:254
chr2	68621338	rs17530191	G	T	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:96,49:0.34:145
chr2	68621427	rs34196827	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr2	68622658	rs1373200	C	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	68622914	rs1063479	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:114,54:0.32:168
chr2	68622952	rs1050181	G	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:72,31:0.30:103
chr2	68753240	rs35002937	T	A	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:52,141:0.73:193
chr2	68762501	rs13413327	G	A	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-0.300;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:60,108:0.64:168
chr2	68765205	rs13404469	C	T	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:89,124:0.58:213
chr2	68794528	rs6751531	G	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr2	68881938	rs140852128	CA	C	503.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.028;QD=6.63;ReadPosRankSum=1.689;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:29,47:0.62:76
chr2	68882468	rs6722313	T	C	20889.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:2,789:1.00:791
chr2	68882661	rs34715748	A	G	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:65,134:0.67:199
chr2	68962259	rs34504087	T	C	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:52,84:0.62:136
chr2	68962570	rs71413157	G	A	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr2	69002760	rs10445945	C	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:39,114:0.75:153
chr2	69009304	rs2271834	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr2	69034249	rs17035954	T	C	1779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.71;ReadPosRankSum=-0.145;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:17,45:0.73:62
chr2	69034258	rs71413165	G	A	1928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=-0.025;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:23,53:0.70:76
chr2	69040500	rs2280310	G	A	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:45,91:0.67:136
chr2	69043264	rs67399232	CT	C	3292.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:98,191:0.66:289
chr2	69043266	rs78107572	T	A	2985.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:114,178:0.61:292
chr2	69043539	rs2271832	G	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr2	69046164	rs17545022	C	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr2	69049939	rs4241344	G	T	3853.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:124,174:0.58:298
chr2	69093312	rs2231344	A	G	5992.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:135,253:0.65:388
chr2	69093353	.	C	T	6003.77	.	AC=1;AF=0.500;AN=2;DP=381;set=Intersection	GT:AD:AF:DP	0/1:129,250:0.66:379
chr2	69093769	rs2231341	A	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr2	69172355	.	AC	A	925.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.58;ReadPosRankSum=-0.698;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr2	69173570	rs1128272	C	T	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:88,151:0.63:239
chr2	69177269	rs62133344	C	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:113,60:0.35:173
chr2	69180161	rs7561266	T	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr2	69204629	rs35624281	T	C	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	69204671	rs9808077	A	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	69205023	rs146210841	TAC	T	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	69205942	rs13424275	C	T	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	69297622	rs4591376	C	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	69298817	rs13030844	T	C	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:105,47:0.31:152
chr2	69300087	rs57008189	G	C	1386.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=66.03;MQRankSum=6.150;QD=26.17;ReadPosRankSum=-1.344;SOR=1.337;set=HC	GT:AD:AF:DP	0/1:18,35:0.66:53
chr2	69300087	.	GGG	CGT	2084	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=24;MQ=66.15;NF=21;NR=8;PP=2084;QD=73.7057887884;SC=GTTGAATCCTGGGACTGAGAG;SbPval=0.61;Source=Platypus;TC=45;TCF=32;TCR=13;TR=29;WE=69300100;WS=69300077;set=Platypus	GT:AD:AF:DP	1/0:16,29:0.64:45
chr2	69300088	rs67110959	GGAC	G	1432.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=66.03;MQRankSum=6.150;QD=27.03;ReadPosRankSum=-1.353;SOR=1.337;set=HC	GT:AD:AF:DP	0/1:18,35:0.66:53
chr2	69300090	.	ACTG	A	2095	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=3;HapScore=1;MGOF=10;MMLQ=24;MQ=65.7;NF=13;NR=9;PP=2095;QD=97.1818181818;SC=GAATCCTGGGACTGAGAGGGT;SbPval=0.61;Source=Platypus;TC=33;TCF=19;TCR=14;TR=22;WE=69300100;WS=69300077;set=Platypus	GT:AD:AF:DP	1/0:11,22:0.67:33
chr2	69300093	.	G	A	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.413;MLEAC=1;MLEAF=0.500;MQ=65.80;MQRankSum=6.147;QD=25.76;ReadPosRankSum=-1.559;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr2	69300243	rs10202939	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:39,75:0.66:114
chr2	69304719	rs7424907	T	C	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:53,110:0.67:163
chr2	69304779	rs13419465	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr2	69317925	rs4854546	G	A	9957.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr2	69318129	rs4241348	T	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	69330284	rs4241349	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	69351621	rs11126217	T	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr2	69362161	rs11903639	C	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr2	69362262	rs73934746	C	G	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=1.353;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr2	69409029	rs6749826	C	A	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	69420591	.	T	TCACA,TCA	822.75	.	AC=1,0;AF=0.500,0.00;AN=2;DP=99;set=Intersection	GT:AF:DP	0/1:0.54:63
chr2	69420596	rs7584057	T	C	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	69741609	rs2276689	C	T	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	69741753	rs3832159	CTGT	C	7331.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr2	69741854	rs6715776	T	G	6208.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	69759415	rs2276687	G	A	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	69771484	rs3771544	C	T	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	69784255	rs3771543	C	T	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	69784278	rs3821277	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	70014986	rs11677629	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	70031797	rs3771541	C	G	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:47,73:0.61:120
chr2	70033584	rs2228203	C	T	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:54,115:0.68:169
chr2	70033649	rs17037076	G	A	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-0.096;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:21,45:0.68:66
chr2	70039677	rs2305523	A	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	70057448	rs3732266	T	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	70064927	rs1377996	C	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr2	70066571	rs3832156	C	CTT	1142.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr2	70068057	rs3771533	G	A	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=1.740;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:23,49:0.68:72
chr2	70068258	rs3836157	CT	C	625.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr2	70076954	rs4852349	A	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=2.411;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr2	70098808	rs3214007	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr2	70123658	.	G	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.886;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr2	70162534	rs2228183	T	G	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:64,123:0.66:187
chr2	70164034	rs3771531	T	C	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:49,133:0.73:182
chr2	70164580	rs3217643	C	CAGGG	921.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr2	70315448	rs12319	A	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:175,89:0.34:264
chr2	70330026	.	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-1.766;QD=0.61;ReadPosRankSum=-2.132;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:130,20:0.13:150
chr2	70905099	rs2902577	T	G	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr2	70917812	rs10084293	C	T	2157.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.45;ReadPosRankSum=-0.528;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:1,91:0.99:92
chr2	70933659	rs11682965	T	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr2	70995129	rs2287097	G	A	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.516;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:74,35:0.32:109
chr2	70995217	rs2287098	A	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	71012604	rs7566541	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,38:0.31:122
chr2	71012734	rs7566476	C	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:98,39:0.28:137
chr2	71036189	rs149426278	CA	C	4037.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	71044095	.	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.957;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.13;ReadPosRankSum=1.480;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:207,29:0.12:236
chr2	71058184	rs13421115	C	T	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	71060936	rs17718987	G	C	10798.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr2	71062648	rs10489990	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr2	71062833	rs11450450	G	GC	6522.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	71159809	.	C	A	222.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr2	71205976	rs1115049	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr2	71206058	rs1115050	A	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	71206626	rs3771383	G	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr2	71211417	rs72832792	C	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:41,78:0.66:119
chr2	71211815	rs3796098	G	A	8904.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:205,396:0.66:601
chr2	71211989	rs3796099	A	G	14885.77	.	AC=1;AF=0.500;AN=2;DB;DP=1026;set=Intersection	GT:AD:AF:DP	0/1:355,663:0.65:1018
chr2	71212129	rs3796100	A	T	6615.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:114,267:0.70:381
chr2	71212405	rs61732279	T	C	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:52,86:0.62:138
chr2	71216246	rs2286980	A	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr2	71220793	rs2276684	T	G	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr2	71221822	rs2302561	A	G	6946.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:154,320:0.68:474
chr2	71297057	rs888352	C	T	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:193,82:0.30:275
chr2	71304538	rs147845543	C	CT	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=1.363;SOR=1.249;set=HC	GT:AD:AF:DP	0/1:29,56:0.66:85
chr2	71305359	rs2302794	G	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:177,88:0.33:265
chr2	71305456	rs6713	C	T	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:247,124:0.33:371
chr2	71351403	rs6748672	C	A	4031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.895;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-0.709;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:91,179:0.66:270
chr2	71351779	rs58684004	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr2	71357417	rs2012479	C	A	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=8.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.520;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:193,63:0.25:256
chr2	71357634	rs1813348	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr2	71357710	rs981947	G	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:151,61:0.29:212
chr2	71360144	rs10199088	A	C	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:206,108:0.34:314
chr2	71360282	rs13010513	G	A	5586.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:159,247:0.61:406
chr2	71360625	rs1813160	G	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:107,57:0.35:164
chr2	71360723	rs1813159	A	G	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	71360735	rs138856662	T	TTCC	1641.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr2	71361332	rs9941620	T	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:78,52:0.40:130
chr2	71365509	rs357757	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.411;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr2	71365676	rs357756	G	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=8.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-1.029;SOR=1.619;set=HC	GT:AD:AF:DP	0/1:91,24:0.21:115
chr2	71367198	rs17655204	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	71375065	rs357744	A	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:74,44:0.37:118
chr2	71376999	rs6574	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.283;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:57,18:0.24:75
chr2	71405776	rs436793	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=0.622;QD=3.78;ReadPosRankSum=-0.116;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:92,30:0.25:122
chr2	71415479	rs357780	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	71417065	rs357777	G	T	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	71417134	rs357776	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:92,47:0.34:139
chr2	71429687	rs13001756	C	G	7654.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:146,338:0.70:484
chr2	71503874	rs2542538	T	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.065;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:35,43:0.55:78
chr2	71503978	rs59596777	T	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	71607539	rs17693408	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	71615571	rs2542529	C	T	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	71620818	rs6741436	C	T	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	71627539	rs3771371	C	T	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	71633275	rs3732233	T	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	71633389	rs6714975	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	71635931	rs12466025	G	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	71636036	rs12474072	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	71645828	rs4852783	G	A	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	71645890	rs4852784	G	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	71645946	rs4438512	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	71693943	rs61333801	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr2	71708825	rs71402983	T	TATCC	1509.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,36:0.86:42
chr2	71747235	rs11675897	A	G	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	71747432	rs11687223	G	T	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr2	71747851	rs12713755	T	C	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	71747899	rs12713756	G	A	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	71755380	rs4852800	A	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	71762232	rs4852801	C	T	12465.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:3,467:0.99:470
chr2	71762310	rs4852802	A	G	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	71766487	rs7609409	G	A	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.965;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	71776345	rs736096	CA	TG	10578.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	71780215	rs2303596	T	C	6866.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:154,323:0.68:477
chr2	71780821	rs2303597	T	C	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr2	71796865	rs10205023	C	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	71801564	rs75127120	G	A	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,61:0.69:89
chr2	71827820	rs114968209	C	T	4626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-0.962;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:98,212:0.68:310
chr2	71828423	rs2303604	A	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr2	71829821	rs1529408	G	T	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,70:0.60:116
chr2	71847943	rs12995778	C	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr2	71871039	rs84181	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr2	71871236	rs84182	A	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr2	71891361	rs2303599	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr2	71901286	rs2559081	C	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	71906171	rs1863812	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	71907930	rs7558412	G	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	72406439	rs371546534	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr2	72692272	rs5832083	A	AAG	10256.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	72741705	.	CAATA	C	60	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.7905;HP=3;HapScore=2;MGOF=47;MMLQ=21;MQ=61.78;NF=3;NR=3;PP=60;QD=11.1666666667;SC=GTATAAATTTCAATAAATAAA;SbPval=0.65;Source=Platypus;TC=6;TCF=3;TCR=3;TR=6;WE=72741716;WS=72741695;set=Platypus	GT:AD:AF:DP	0/1:0,6:1.00:6
chr2	72741728	rs367736783	TAA	T	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=36.82;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	72741732	.	TAA	T	37.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=-0.489;QD=4.72;ReadPosRankSum=1.150;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	72741734	rs71337705	A	T	96.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=-0.000;QD=10.75;ReadPosRankSum=-1.006;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	72742083	.	GACAC	G,GAC	2518.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.440;QD=26.51;ReadPosRankSum=-1.326;SOR=0.729;set=HC	GT:AD:AF:DP	1/2:7,23,65:0.24,0.68:95
chr2	73145368	rs202090552	C	T	3487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=0.252;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:368,203:0.36:571
chr2	73151231	rs1561247	C	T	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	73188221	rs141738633	CCCCTG	C	1787.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.487;QD=10.83;ReadPosRankSum=-0.059;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:113,52:0.32:165
chr2	73188422	rs6710567	G	C	42.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr2	73195837	rs10565763	TTTCC	T	1059.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=42.39;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	73215562	rs1370383	T	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	73226090	rs12233055	G	A	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	73226259	rs732180	A	G	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	73226282	rs732179	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	73268929	rs111373797	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	73280303	.	GA	G	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.142;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chr2	73285752	rs10180720	T	A	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	73302891	rs3832033	G	GGCCT	1285.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr2	73316540	rs3901273	A	T	13543.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr2	73339430	rs4143146	T	G	8210.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr2	73429808	rs1864492	G	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr2	73430234	rs13432787	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr2	73435786	rs57038990	C	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	73446142	rs148227562	C	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:276,144:0.34:420
chr2	73447736	rs2303905	G	A	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.748;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr2	73447775	rs2303904	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:53,17:0.24:70
chr2	73450139	rs17008885	A	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:141,63:0.31:204
chr2	73455747	rs2288631	C	T	2238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.513;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:454,150:0.25:604
chr2	73460293	rs70965722	AGGGCC	A	695.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr2	73461483	rs1053329	C	A	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:100,72:0.42:172
chr2	73467676	rs3835072	GAA	G	2308.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:151,67:0.31:218
chr2	73471193	.	G	GT	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=11.501;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.760;QD=1.23;ReadPosRankSum=-0.060;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:127,39:0.23:166
chr2	73471653	rs1018342	T	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:136,57:0.30:193
chr2	73477351	rs909065	T	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr2	73478461	rs7851	A	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.731;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:115,41:0.26:156
chr2	73490412	rs34363861	A	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:98,45:0.31:143
chr2	73491514	rs61735876	C	T	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.652;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-2.577;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:223,85:0.28:308
chr2	73491683	rs4852916	G	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr2	73492614	rs526106	A	T	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:155,91:0.37:246
chr2	73493303	rs13021769	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=7.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.247;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	73613031	rs193922695	T	TGGA	1410.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:6,36:0.86:42
chr2	73650122	rs1881246	T	A	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	73675019	rs66492706	CT	C	1242.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	73675227	rs34628045	T	TCTC	19248.73	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr2	73675669	rs2037814	T	G	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	73675844	rs7598901	C	T	12298.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr2	73679082	.	G	C	2917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DP=580;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-1.355;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:408,170:0.29:578
chr2	73762205	rs73947814	T	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr2	73828310	rs1320374	T	C	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	73828538	rs1052161	G	A	6314.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	73830581	.	GA	G	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.523;QD=1.49;ReadPosRankSum=-1.391;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr2	73898118	rs7570683	C	T	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	73898359	rs4341964	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	73899613	rs2421585	T	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	73899955	rs6725284	G	T	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr2	73900210	rs4637150	A	G	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	73900918	.	CTT	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.746;QD=6.25;ReadPosRankSum=0.165;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	73927931	rs4852974	A	G	9523.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	73928098	rs2001490	C	G	21325.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,770:1.00:770
chr2	73928366	rs2012574	G	C	10184.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr2	73956940	rs67805162	CT	C	162.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=-1.246;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	73957124	rs7210	A	G	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	73957227	rs13003035	T	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	73993436	rs34279043	CA	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-0.950;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	73994074	rs2567599	G	A	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	74000701	rs2116367	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	74007136	rs2272051	T	C	11778.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr2	74007345	rs3813228	A	G	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	74128361	rs1653258	T	G	6790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.06;ReadPosRankSum=-0.014;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:101,170:0.63:271
chr2	74128369	rs1632564	G	A	7096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.39;ReadPosRankSum=-1.407;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:105,186:0.64:291
chr2	74128391	rs1721241	G	C	11491.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr2	74128433	rs1050146	C	T	14017.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr2	74128660	.	TG	T	404	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=1;MGOF=4;MMLQ=28;MQ=60.75;NF=2;NR=26;PP=404;QD=14.5357142857;SC=GGGAAGGAAATGTGTGTGTGT;SbPval=0.72;Source=Platypus;TC=55;TCF=5;TCR=50;TR=28;WE=74128721;WS=74128650;set=Platypus	GT:AD:AF:DP	0/1:27,28:0.51:55
chr2	74128666	.	TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC	T	2997	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=1;MGOF=4;MMLQ=24;MQ=61.19;NF=0;NR=22;PP=2997;QD=20;SC=GAAATGTGTGTGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=30;TCF=2;TCR=28;TR=22;WE=74128721;WS=74128650;set=Platypus	GT:AD:AF:DP	1/1:8,22:0.73:30
chr2	74129664	rs1653256	A	G	9316.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:258,433:0.63:691
chr2	74129712	rs1721243	C	G	10898.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:293,483:0.62:776
chr2	74129895	rs1721244	G	A	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:93,175:0.65:268
chr2	74135380	rs756127	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr2	74135797	rs702461	T	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr2	74135898	rs756128	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:80,110:0.58:190
chr2	74140581	rs891699	A	T	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:49,121:0.71:170
chr2	74140789	rs891698	T	C	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:100,180:0.64:280
chr2	74140888	rs891697	A	C	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr2	74142164	rs35892339	GA	G	216.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	74146869	rs1721238	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=10.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.31;ReadPosRankSum=-0.464;SOR=0.012;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	74153905	rs831526	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	74229975	rs113023108	G	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr2	74230310	rs142058377	CGTGCGTGTGT	C	1825.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr2	74362090	rs828879	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	74372506	.	G	A	1838.77	.	AC=1;AF=0.500;AN=2;DP=127;set=Intersection	GT:AD:AF:DP	0/1:43,83:0.66:126
chr2	74425701	rs11687991	C	T	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:48,116:0.71:164
chr2	74425947	rs13001449	G	T	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:132,104:0.44:236
chr2	74450058	rs36081793	C	T	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.388;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=5.162;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.562;QD=3.73;ReadPosRankSum=-0.946;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:92,31:0.25:123
chr2	74466594	rs4853018	G	A	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	74588605	rs11555696	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.710;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:109,44:0.29:153
chr2	74649916	rs200949812	TC	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.952;SOR=1.692;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr2	74649921	rs11685929	C	A	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.565;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr2	74720002	rs4853026	C	G	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	74725144	rs6546908	T	C	5910.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	74756548	rs1183739	G	C	5511.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:136,242:0.64:378
chr2	74884611	rs205650	A	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	75061873	rs663504	C	G	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr2	75105798	rs604112	A	G	11690.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr2	75113572	rs2306806	G	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:126,52:0.29:178
chr2	75113657	rs2229626	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:83,58:0.41:141
chr2	75113789	rs2229627	C	G	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:260,124:0.32:384
chr2	75115108	rs10194657	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.733;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:92,21:0.19:113
chr2	75116627	rs4853069	C	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.126;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:207,54:0.21:261
chr2	75185856	rs12366	G	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:123,53:0.30:176
chr2	75187573	rs3771799	G	A	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	75187793	rs3821312	A	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	75187869	rs3771800	T	C	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	75425623	rs2024512	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	75425728	rs6715729	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr2	75744918	rs2286995	T	C	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:158,63:0.29:221
chr2	75745081	rs2286994	T	C	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=7.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.493;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:188,71:0.27:259
chr2	75873733	rs2286238	T	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr2	77748604	rs113233659	TA	T	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.360;QD=4.21;ReadPosRankSum=-0.232;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:63,33:0.34:96
chr2	79253028	rs3816371	G	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr2	79253029	rs385742	T	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	79253150	rs369967	A	G	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.350;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:134,44:0.25:178
chr2	79253375	rs425846	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:99,33:0.25:132
chr2	79253818	rs412912	C	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	79253987	.	ATAGGGGAAAGT	A	1217.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.95;QD=43.49;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	79254000	.	CATGCA	C	1216.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.66;QD=45.06;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	79254029	rs34088535	C	CA	2849.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	79254065	rs431912	C	T	7487.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr2	79254101	rs396461	T	G	16767.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;QD=28.23;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,594:1.00:594
chr2	79254261	rs452267	T	C	13670.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr2	79255426	rs383969	G	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	79312414	rs3739144	G	A	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:128,77:0.38:205
chr2	79313815	rs2073445	G	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr2	79314094	rs6723688	G	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr2	79348129	rs11339710	GA	G	1722.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.997;QD=11.96;ReadPosRankSum=-0.366;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:22,122:0.85:144
chr2	79348196	rs2070707	G	T	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:17,58:0.77:75
chr2	79350186	rs3739142	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,31:0.33:94
chr2	79350347	rs12228	A	G	10718.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr2	79350505	rs12072	C	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:132,60:0.31:192
chr2	79385758	rs80188986	A	C	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:141,130:0.48:271
chr2	79385786	rs76653007	TG	CA	3036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.523;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=16.397;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-8.876;QD=14.74;ReadPosRankSum=-1.447;SOR=1.630;set=HC	GT:AD:AF:DP	0/1:123,83:0.40:206
chr2	79385823	rs201139260	T	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.046;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=10.682;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-8.496;QD=3.84;ReadPosRankSum=-4.754;SOR=1.768;set=HC	GT:AD:AF:DP	0/1:95,29:0.23:124
chr2	79750543	rs10205858	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr2	79914570	rs35164413	C	CT	634.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=1.956;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr2	80529956	rs6733871	T	C	3495.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:78,149:0.66:227
chr2	80540600	rs17018984	C	T	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:16,54:0.77:70
chr2	80772972	rs2276659	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr2	80801346	rs2228460	T	C	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr2	80809027	rs17019401	C	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	80831481	rs2302875	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	80846147	rs56987036	C	CT	393.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-1.469;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr2	84518438	rs1968722	T	C	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	84650707	rs2832	A	G	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	84676163	rs10202632	C	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	84676886	.	TAAAA	T,TA	842.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.21;ReadPosRankSum=1.671;SOR=1.839;set=HC	GT:AD:AF:DP	1/2:1,16,10:0.59,0.37:27
chr2	84755996	rs35980296	A	ATT	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.15;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	84756049	rs4832089	G	A	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	84756341	rs4832090	T	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	84771480	rs1037863	G	A	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	84771567	rs1542477	C	T	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	84800605	rs11891970	C	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	84806553	rs6547569	G	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	84822715	rs6761632	C	T	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	84834063	rs4276039	T	C	8825.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	84834237	rs4441485	T	C	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,272:1.00:273
chr2	84880695	rs12992282	G	A	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.487;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:152,46:0.23:198
chr2	84897361	rs12470102	T	A	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	84897517	rs1881095	A	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	84899360	rs4832106	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	85108252	rs34667238	G	GC	1517.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=36.14;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	85198401	.	C	CCCG	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.25;ReadPosRankSum=0.895;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	85361101	rs116356120	T	G	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:85,136:0.62:221
chr2	85510777	rs7574856	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	85532205	rs6741339	C	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	85549868	rs4240199	A	G	5156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=1.383;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:317,149:0.32:466
chr2	85549874	rs3637	A	G	5092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=1.180;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:306,146:0.32:452
chr2	85552186	rs7572750	C	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr2	85553784	rs1044973	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:169,71:0.30:240
chr2	85553827	.	T	C	3440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=-0.636;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:65,142:0.69:207
chr2	85554080	rs4247303	G	A	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:491,273:0.36:764
chr2	85570942	rs9309620	G	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr2	85571710	rs4832171	A	G	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr2	85573033	rs908302	G	A	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:158,94:0.37:252
chr2	85573049	rs908304	G	A	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:155,94:0.38:249
chr2	85622059	rs6886	T	C	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:42,110:0.72:152
chr2	85662650	rs6547618	A	G	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:29,68:0.70:97
chr2	85766545	rs2289972	C	T	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	85769246	rs1078005	G	A	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	85769711	rs1078004	C	G	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	85769975	rs2043675	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	85777270	rs2028898	G	A	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	85780131	rs2592551	G	A	9311.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr2	85780536	rs699664	C	T	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	85781318	rs1254896	T	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	85788175	rs7568458	T	A	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	85788401	rs11350741	GA	G,GCA	612.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=22;set=Intersection	GT:AF:DP	1/1:0.95:22
chr2	85788731	.	CA	C	88	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=1;MGOF=14;MMLQ=24;MQ=60.0;NF=0;NR=4;PP=88;QD=28.5;SC=TGCTTGGCGGCAGGGGGCGGA;SbPval=1.0;Source=Platypus;TC=21;TCF=3;TCR=18;TR=4;WE=85788746;WS=85788721;set=Platypus	GT:AD:AF:DP	0/1:17,4:0.19:21
chr2	85788738	rs115669754	C	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	85804917	rs141129979	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr2	85806068	rs3731827	T	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	85806266	rs3731828	C	T	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	85807082	rs1348818	T	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	85808594	rs11326680	CA	C	604.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.442;QD=13.44;ReadPosRankSum=-0.418;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:4,41:0.91:45
chr2	85808737	rs1009	A	G	8957.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	85808871	rs1058588	C	T	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	85818797	rs2289976	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr2	85818886	rs14976	C	T	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:98,157:0.62:255
chr2	85820027	rs72843872	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr2	85820301	rs1049363	A	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr2	85820373	rs1049359	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	85823167	rs35880310	TG	T	988.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	85824039	rs1127974	G	A	4527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.841;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=-1.194;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:89,200:0.69:289
chr2	85824078	rs41290037	C	T	1822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.124;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:228,104:0.31:332
chr2	85824084	rs2232748	G	C	10826.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr2	85826132	rs1044158	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	85826721	rs11891495	G	A	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:80,153:0.66:233
chr2	85826894	rs150451323	TCTC	T	535.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	85828014	rs6733550	T	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	85843348	rs11544042	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr2	85848747	rs35865728	CT	C	1678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.467;QD=11.82;ReadPosRankSum=0.509;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:24,118:0.83:142
chr2	85890753	rs762548	A	G	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:91,52:0.36:143
chr2	85890758	rs2304566	T	C	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:50,89:0.64:139
chr2	85890771	rs893159	T	G	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	85893616	rs147140768	CTG	C	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	85893741	rs1130866	G	A	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	85894308	rs3024798	G	T	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:59,101:0.63:160
chr2	85895338	rs2077079	T	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,53:0.66:80
chr2	85921353	rs1866140	G	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr2	85921389	rs1866139	G	C	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr2	85921992	rs2043760	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	85924729	rs11127	C	T	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:77,122:0.61:199
chr2	85924899	rs1437742	T	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr2	85925529	rs4240200	A	G	3709.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:107,167:0.61:274
chr2	85925667	rs4240201	G	A	13730.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:174,352:0.67:526
chr2	85925680	rs4240202	T	G	14049.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:164,369:0.69:533
chr2	85925756	rs7908	C	G	6799.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:145,305:0.68:450
chr2	85925848	rs12845	C	G	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:83,163:0.66:246
chr2	85925889	.	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=0.658;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:118,16:0.12:134
chr2	85981761	rs17851881	T	C	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	86107951	rs34410645	GA	G	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=2.109;QD=2.57;ReadPosRankSum=0.339;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr2	86107987	rs11127009	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=2.315;QD=3.94;ReadPosRankSum=-0.788;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr2	86258784	rs2278536	T	G	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	86259443	rs2276626	C	T	18904.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr2	86272191	rs7572386	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	86275985	rs2289239	A	G	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	86292656	rs311563	C	T	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=27.37;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	86302103	rs3815840	A	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	86304932	.	GCGCACACACACACA	GCA,G	273	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=24;MQ=63.71;NF=7,7;NR=3,4;PP=273,20;QD=29.1;SC=GCACGCGCGCGCGCACACACA;SbPval=0.42;Source=Platypus;TC=13;TCF=10;TCR=3;TR=10,11;WE=86304953;WS=86304924;set=Platypus	GT:AF:DP	0/1:0.77:13
chr2	86305123	rs2288117	T	C	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	86310110	rs2288118	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	86315741	rs2288120	C	T	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	86317012	rs146078741	C	G	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:30,64:0.68:94
chr2	86317037	rs4832242	G	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	86332809	rs4832245	G	A	8513.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr2	86334199	rs2367201	G	A	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.23;SOR=6.132;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	86343476	rs4832022	C	A	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	86343494	rs4832248	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	86344367	rs2059353	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	86346308	rs6715623	G	A	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	86352010	rs4832250	G	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	86352393	rs13424070	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:40,13:0.25:53
chr2	86352785	rs4618054	G	A	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	86352825	rs6740228	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	86357960	rs35886251	AT	A	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.455;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	86359405	rs1559515	G	T	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	86362204	rs7606421	C	T	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	86363074	rs3770069	A	G	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	86363855	rs7558040	G	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	86364706	rs56274257	TG	T	1958.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	86371883	rs8244	T	C	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	86373498	rs112351810	A	AT	133.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.56;ReadPosRankSum=0.441;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr2	86385668	rs1057893	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	86385682	rs34945759	TC	T	601.87	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,36:0.86:42
chr2	86385886	rs6739460	A	G	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	86398074	rs2288115	A	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	86398291	rs2288113	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	86406438	rs6547663	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	86408385	rs6731995	A	G	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	86420255	rs11897696	G	A	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	86422416	rs17551822	T	C	10343.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	86422421	rs17551815	T	G	10269.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	86433240	rs10901	C	T	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	86434569	rs9309634	T	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	86437551	rs7565645	T	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	86479035	rs12988844	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	86479287	rs17438687	G	T	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,86:0.70:122
chr2	86481835	rs2276625	C	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr2	86491245	rs1863056	C	T	3424.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:83,156:0.65:239
chr2	86509267	rs1863058	G	A	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:66,132:0.67:198
chr2	86509388	rs1863059	T	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,72:0.64:113
chr2	86719141	.	A	G	2574.77	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:44,104:0.70:148
chr2	86947783	rs76239019	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	86978895	rs4832311	G	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	86979093	rs10186663	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr2	86992337	rs3840984	T	TAA	2308.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr2	86998659	rs56328788	CT	C	2473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.357;QD=7.98;ReadPosRankSum=1.972;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:113,197:0.64:310
chr2	87015633	rs71378806	T	TGA	7624.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	87048702	rs13001400	T	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	87049358	rs373630399	GA	G	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.496;QD=2.37;ReadPosRankSum=-1.163;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr2	87069379	rs4322832	G	A	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=46.49;MQRankSum=-0.025;QD=17.38;ReadPosRankSum=-1.250;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:24,63:0.72:87
chr2	87069431	rs4514875	C	T	1831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.47;MQRankSum=-1.290;QD=18.32;ReadPosRankSum=-0.635;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:29,71:0.71:100
chr2	87073743	rs4971887	A	G	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr2	87085598	rs28727404	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr2	87092865	rs10195435	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr2	87276811	rs200334386	T	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.23;MQRankSum=-2.262;QD=17.72;ReadPosRankSum=0.000;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	87303060	rs79162177	C	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr2	87356024	rs3101261	C	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=53.08;MQRankSum=-2.709;QD=1.61;ReadPosRankSum=-0.303;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:67,10:0.13:77
chr2	87356038	rs201869954	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=52.63;MQRankSum=-3.105;QD=1.62;ReadPosRankSum=0.281;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:54,7:0.11:61
chr2	88272798	rs201020598	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=12.442;MLEAC=1;MLEAF=0.500;MQ=50.17;MQRankSum=0.269;QD=18.51;ReadPosRankSum=0.035;SOR=0.024;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr2	88328163	.	C	CTTT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=1.452;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	88328208	rs12328217	G	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	88384084	rs920578	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr2	88387403	rs1542088	C	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr2	88396348	rs62156964	G	A	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.051;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-1.507;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr2	88396358	rs62156965	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.248;SOR=2.152;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr2	88402748	rs748226	G	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.848;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	88407959	rs2970918	T	C	6348.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:113,290:0.72:403
chr2	88409717	rs200741830	T	TGA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.452;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	88410102	rs2289497	C	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:37,58:0.61:95
chr2	88411605	rs2919865	A	T	4303.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:121,195:0.62:316
chr2	88411793	rs2970888	C	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:82,145:0.64:227
chr2	88422758	rs2197076	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	88472791	rs4129190	G	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	88474370	rs2139100	A	G	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	88484808	rs2292869	C	A	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	88485392	rs1878810	G	C	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	88748390	rs4972212	A	T	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	88751751	rs11456039	A	AG	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	88825315	rs34809896	G	GT	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.694;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.168;QD=4.92;ReadPosRankSum=-0.910;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:36,26:0.42:62
chr2	88825334	rs35903656	CAAG	C	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr2	88826184	rs76507069	AT	A	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-1.496;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	88826219	rs56783496	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	88861757	rs1800980	T	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr2	88870632	rs4972221	A	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	88874891	rs1805165	C	A	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	88882942	rs6750998	T	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr2	88895123	rs13045	T	C	5112.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	88895351	rs7571971	T	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	88926729	rs72416210	CCAG	C	1072.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr2	88997878	rs908277	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr2	88999476	rs1158603	G	A	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr2	89160707	.	C	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.354;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:175,52:0.23:227
chr2	89160889	rs232224	G	T	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:304,140:0.32:444
chr2	89161069	rs113458930	G	C	7551.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:184,334:0.64:518
chr2	89161322	rs232223	C	G	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.150;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:269,110:0.29:379
chr2	89161547	rs232222	A	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.010;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=1.606;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:83,29:0.26:112
chr2	89185774	rs232191	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:16,50:0.76:66
chr2	89196757	rs3843805	G	A	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:67,111:0.62:178
chr2	89196906	rs4588191	A	C	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:73,120:0.62:193
chr2	89197190	rs55661410	C	T	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:84,142:0.63:226
chr2	89512775	rs145409842	T	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr2	89513365	rs181706250	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:81,31:0.28:112
chr2	90007670	rs2847917	G	A	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	90008243	rs79315122	G	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr2	90008287	rs147071425	A	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	90043509	rs201839533	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.88;QD=26.61;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	90078373	.	AC	A	1038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=46.47;MQRankSum=-1.147;QD=26.63;ReadPosRankSum=0.584;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:6,33:0.85:39
chr2	90108416	rs859744	G	A	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	90108778	rs859745	G	T	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	91766609	rs56138505	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-3.348;QD=0.45;ReadPosRankSum=0.681;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:344,51:0.13:395
chr2	91766685	rs2258279	GA	TG	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.955;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-9.764;QD=7.94;ReadPosRankSum=-0.958;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:145,53:0.27:198
chr2	91767199	rs2558010	A	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr2	91767507	rs2580541	T	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.256;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:152,25:0.14:177
chr2	91809227	rs2536993	A	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:214,92:0.30:306
chr2	91809324	rs2536994	C	T	2703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.225;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=56.72;MQRankSum=-26.563;QD=3.07;ReadPosRankSum=2.896;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:683,197:0.22:880
chr2	91809385	rs55812636	C	G	2766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.006;ClippingRankSum=0.000;DB;DP=842;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-25.073;QD=3.29;ReadPosRankSum=-1.062;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:655,187:0.22:842
chr2	91809404	rs55918232	G	C	3062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.691;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-22.956;QD=3.98;ReadPosRankSum=-3.619;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:585,184:0.24:769
chr2	91809456	rs2191971	T	G	1808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-15.894;QD=3.83;ReadPosRankSum=4.465;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:357,115:0.24:472
chr2	91809468	.	C	CTAA	3553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-14.187;QD=8.63;ReadPosRankSum=5.560;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:305,107:0.26:412
chr2	91809470	rs2386154	G	A	3603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-13.874;QD=8.88;ReadPosRankSum=5.568;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:300,106:0.26:406
chr2	91809472	.	G	GTGACTAACAA	3590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-13.676;QD=8.95;ReadPosRankSum=5.296;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:294,107:0.27:401
chr2	91925022	rs28577290	C	A	1881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=9.572;MLEAC=1;MLEAF=0.500;MQ=47.01;MQRankSum=-1.458;QD=15.95;ReadPosRankSum=1.085;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:37,81:0.69:118
chr2	91925139	rs62143830	C	G	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=86.380;MLEAC=1;MLEAF=0.500;MQ=44.79;MQRankSum=-8.215;QD=9.88;ReadPosRankSum=-1.747;SOR=7.465;set=HC	GT:AD:AF:DP	0/1:66,46:0.41:112
chr2	91925151	rs114729754	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr2	91927348	rs115528025	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.46;QD=25.95;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	95537245	rs4854234	C	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr2	95537572	rs4854235	C	T	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:104,85:0.45:189
chr2	95537622	rs11164112	A	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:109,101:0.48:210
chr2	95537871	rs11483811	G	GC	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=7.89;ReadPosRankSum=-1.642;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	95816017	.	T	TAA	150.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.191;QD=5.59;ReadPosRankSum=0.381;SOR=0.049;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	95830652	rs6719142	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	95830737	rs11395151	C	CA	453.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	95846158	rs3112230	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	95847040	rs10578519	TGCG	T	6171.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	95944902	rs61086044	A	AC	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	95945568	rs7585914	G	A	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.693;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:33,32:0.49:65
chr2	95945830	rs7586229	G	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	95947085	rs12992066	A	G	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:101,139:0.58:240
chr2	95947099	rs72819488	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:117,85:0.42:202
chr2	95952177	rs7602232	C	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	95963242	rs2248415	C	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=0.000;QD=5.71;ReadPosRankSum=1.007;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	96012907	rs7602807	C	G	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:91,107:0.54:198
chr2	96048862	rs58372613	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	96076409	rs6577014	C	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	96514681	rs202097755	AC	A	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	96525643	rs75198192	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-0.228;QD=2.97;ReadPosRankSum=0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr2	96525652	rs77710257	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-0.332;QD=1.80;ReadPosRankSum=0.214;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr2	96601240	rs199988716	G	A	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=14.634;MLEAC=1;MLEAF=0.500;MQ=45.85;MQRankSum=-7.319;QD=9.68;ReadPosRankSum=-0.100;SOR=1.491;set=HC	GT:AD:AF:DP	0/1:68,62:0.48:130
chr2	96601296	rs145876416	A	ATGATTAAT	3066.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.647;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.497;MLEAC=1;MLEAF=0.500;MQ=46.52;MQRankSum=-10.873;QD=18.47;ReadPosRankSum=2.263;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:87,79:0.48:166
chr2	96601345	rs149389865	T	C	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=46.99;MQRankSum=-7.850;QD=4.94;ReadPosRankSum=-0.286;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:79,39:0.33:118
chr2	96601364	rs148485539	C	T	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.798;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=13.419;MLEAC=1;MLEAF=0.500;MQ=47.02;MQRankSum=-6.829;QD=6.95;ReadPosRankSum=1.060;SOR=2.051;set=HC	GT:AD:AF:DP	0/1:65,35:0.35:100
chr2	96601489	.	GGA	AGG	75	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=1;MGOF=91;MMLQ=28;MQ=42.81;NF=1;NR=3;PP=75;QD=32.1169687156;SC=AACTAACACAGGAAAGTACTT;SbPval=0.78;Source=Platypus;TC=22;TCF=7;TCR=15;TR=4;WE=96601499;WS=96601479;set=Platypus	GT:AD:AF:DP	1/0:18,4:0.18:22
chr2	96604452	rs371118313	C	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr2	96604516	.	C	A,T	670	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=26;MMLQ=25;MQ=56.14;NF=39,48;NR=18,20;PP=611,670;QD=11.3293195184;SC=CAAAAAACTACGAGCATTTTC;SbPval=0.51;Source=Platypus;TC=186;TCF=128;TCR=58;TR=57,68;WE=96604524;WS=96604506;set=Platypus	GT:AF:DP	0/1:0.31:186
chr2	96604591	rs62154561	A	G	7427.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:146,285:0.66:431
chr2	96604606	rs80350011	C	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.128;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-4.991;QD=1.56;ReadPosRankSum=0.401;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:336,78:0.19:414
chr2	96604632	rs62154562	A	T	5029.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:137,204:0.60:341
chr2	96604675	rs75415330	T	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-2.984;QD=1.42;ReadPosRankSum=-2.115;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:156,30:0.16:186
chr2	96604679	rs62154563	C	T	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:76,103:0.58:179
chr2	96604730	rs113311459	T	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.753;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=5.947;MLEAC=1;MLEAF=0.500;MQ=47.97;MQRankSum=-5.037;QD=9.60;ReadPosRankSum=0.177;SOR=2.453;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr2	96606829	rs190428367	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-1.834;QD=7.29;ReadPosRankSum=-0.000;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr2	96606833	.	TGTTTC	T	34.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-1.834;QD=5.79;ReadPosRankSum=-0.000;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr2	96606839	.	T	TA	34.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-1.834;QD=5.79;ReadPosRankSum=-0.000;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr2	96606852	rs201301417	A	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-1.834;QD=7.29;ReadPosRankSum=0.431;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr2	96606852	.	AAT	TAC	43	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=5;HapScore=2;MGOF=20;MMLQ=28;MQ=51.03;NF=2;NR=0;PP=43;QD=48.2339374311;SC=GTACACAAAAAATAACATTAT;SbPval=1.0;Source=Platypus;TC=6;TCF=4;TCR=2;TR=2;WE=96606862;WS=96606842;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr2	96606854	rs199773773	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-1.834;QD=7.29;ReadPosRankSum=0.431;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr2	96606944	rs78739183	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=-1.311;QD=3.65;ReadPosRankSum=-0.651;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	96606985	.	T	C	195	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=4;MGOF=15;MMLQ=28;MQ=50.02;NF=1;NR=2;PP=195;QD=76.5904041824;SC=CAGAAAATGTTATATTTACTA;SbPval=0.42;Source=Platypus;TC=16;TCF=9;TCR=7;TR=3;WE=96607011;WS=96606975;set=Platypus	GT:AD:AF:DP	1/0:13,3:0.19:16
chr2	96610329	rs201777230	G	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-11.331;QD=1.27;ReadPosRankSum=-4.432;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:133,27:0.17:160
chr2	96610395	rs147285461	C	CA	1415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.229;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-15.258;QD=5.34;ReadPosRankSum=5.787;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:215,50:0.19:265
chr2	96610399	rs116594293	C	A	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.427;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-15.344;QD=5.28;ReadPosRankSum=5.822;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:218,50:0.19:268
chr2	96610410	rs77220524	T	A	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.765;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-16.177;QD=5.37;ReadPosRankSum=4.680;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:215,50:0.19:265
chr2	96610413	rs74491979	C	T	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.514;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-16.020;QD=5.46;ReadPosRankSum=4.023;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:210,50:0.19:260
chr2	96610420	rs78473403	G	T	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.967;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-15.636;QD=5.92;ReadPosRankSum=1.818;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:198,50:0.20:248
chr2	96610731	rs200547048	C	G	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:32,5:0.14:37
chr2	96610759	rs377016561	T	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=12.813;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-7.756;QD=4.95;ReadPosRankSum=-1.945;SOR=3.360;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr2	96610768	rs376183764	T	G	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.275;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=20.916;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-8.459;QD=6.62;ReadPosRankSum=-2.692;SOR=4.144;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr2	96610787	rs112708872	C	CA	1863.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr2	96610809	rs369841640	AAG	A	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=15.956;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-5.440;QD=1.03;ReadPosRankSum=-1.933;SOR=2.278;set=HC	GT:AD:AF:DP	0/1:150,32:0.18:182
chr2	96610836	rs11893977	T	C	6645.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:146,228:0.61:374
chr2	96610899	rs62154593	T	C	16770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.802;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-10.336;QD=25.53;ReadPosRankSum=1.539;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:221,436:0.66:657
chr2	96610921	rs62154594	T	G	16866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-9.455;QD=26.19;ReadPosRankSum=-0.749;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:209,435:0.68:644
chr2	96610952	rs62154595	T	C	9413.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:168,353:0.68:521
chr2	96610958	rs79852024	G	T	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-2.728;QD=1.76;ReadPosRankSum=-0.421;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:404,87:0.18:491
chr2	96611018	rs62154596	G	A	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:45,110:0.71:155
chr2	96616348	rs62154609	C	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.345;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=17.751;MLEAC=1;MLEAF=0.500;MQ=53.96;MQRankSum=-5.635;QD=12.84;ReadPosRankSum=-1.424;SOR=4.160;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr2	96616353	rs150793442	GT	G	118.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=7.577;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-2.862;QD=2.97;ReadPosRankSum=-0.837;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr2	96616354	rs78161475	T	C	282.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.483;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.932;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-4.008;QD=7.07;ReadPosRankSum=-1.892;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr2	96616355	rs62154610	T	C	130.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=7.712;MLEAC=1;MLEAF=0.500;MQ=52.85;MQRankSum=-2.800;QD=3.35;ReadPosRankSum=-1.282;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr2	96616361	rs1852833	AA	CT	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.94;MQRankSum=-3.012;QD=2.23;ReadPosRankSum=-1.456;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr2	96616378	rs62154611	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr2	96616442	rs74960926	C	A	2992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.839;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.776;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-8.610;QD=19.69;ReadPosRankSum=3.816;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:73,79:0.52:152
chr2	96616448	rs76503749	G	T	2964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.719;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=-8.041;QD=19.25;ReadPosRankSum=4.360;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:76,78:0.51:154
chr2	96616485	rs78218362	C	G	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr2	96616501	.	C	CAA	2438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=11.462;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=-2.067;QD=16.37;ReadPosRankSum=-1.310;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:83,66:0.44:149
chr2	96616505	rs373114066	AGC	A	2345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=13.680;MLEAC=1;MLEAF=0.500;MQ=53.00;MQRankSum=-2.011;QD=15.85;ReadPosRankSum=-1.880;SOR=1.601;set=HC	GT:AD:AF:DP	0/1:87,61:0.41:148
chr2	96616532	rs112676430	T	G	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr2	96616571	rs146478446	C	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=8.435;MLEAC=1;MLEAF=0.500;MQ=47.36;MQRankSum=-4.330;QD=2.01;ReadPosRankSum=-0.245;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:58,8:0.12:66
chr2	96616576	rs143490798	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.951;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=6.192;MLEAC=1;MLEAF=0.500;MQ=46.35;MQRankSum=-4.349;QD=2.24;ReadPosRankSum=-0.698;SOR=2.041;set=HC	GT:AD:AF:DP	0/1:54,8:0.13:62
chr2	96616580	rs201649771	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.931;MLEAC=1;MLEAF=0.500;MQ=46.25;MQRankSum=-4.151;QD=1.84;ReadPosRankSum=-0.526;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:52,7:0.12:59
chr2	96616597	rs114583836	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.06;MQRankSum=-3.519;QD=0.64;ReadPosRankSum=-0.381;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:48,5:0.09:53
chr2	96616599	rs116630524	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.13;MQRankSum=-3.527;QD=0.71;ReadPosRankSum=-0.513;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:47,5:0.10:52
chr2	96616607	rs141967446	G	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.80;MQRankSum=-3.838;QD=1.08;ReadPosRankSum=-1.183;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:41,5:0.11:46
chr2	96616622	rs112338915	C	T	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:31,4:0.11:35
chr2	96616654	rs75283408	C	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	96616667	rs77249402	A	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	96616690	rs111409549	T	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=15.233;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-0.496;QD=17.08;ReadPosRankSum=0.424;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	96616947	rs74369410	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-4.271;QD=4.44;ReadPosRankSum=-1.288;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr2	96616951	rs74904196	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-4.271;QD=8.79;ReadPosRankSum=-0.947;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr2	96616957	rs76255864	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.50;MQRankSum=-4.674;QD=8.70;ReadPosRankSum=-1.558;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr2	96616967	rs77784489	G	C	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=53.99;MQRankSum=-5.124;QD=12.99;ReadPosRankSum=-1.424;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr2	96616976	rs76077075	A	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.955;MLEAC=1;MLEAF=0.500;MQ=53.22;MQRankSum=-5.524;QD=13.38;ReadPosRankSum=-1.028;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr2	96616979	rs80105408	G	C	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.709;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=-5.423;QD=14.51;ReadPosRankSum=-0.996;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	96616997	rs74701498	T	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr2	96617023	rs78346055	C	A	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=-4.600;QD=17.68;ReadPosRankSum=0.886;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:38,34:0.47:72
chr2	96617025	rs72492186	C	A	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.511;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-4.777;QD=17.25;ReadPosRankSum=1.636;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:42,34:0.45:76
chr2	96617039	rs74263747	A	C	1020.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-4.295;QD=10.63;ReadPosRankSum=1.556;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:56,40:0.42:96
chr2	96617069	rs72935831	A	G	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-7.374;QD=11.49;ReadPosRankSum=1.532;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:92,47:0.34:139
chr2	96617090	rs72935833	A	G	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-7.305;QD=10.08;ReadPosRankSum=0.272;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:110,45:0.29:155
chr2	96617106	rs76943414	A	C	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-6.697;QD=8.95;ReadPosRankSum=-0.968;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr2	96617111	rs76474100	G	A	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-6.870;QD=8.16;ReadPosRankSum=-1.343;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:109,37:0.25:146
chr2	96617113	rs80297803	G	A	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-6.898;QD=8.39;ReadPosRankSum=-1.527;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:110,37:0.25:147
chr2	96617125	rs75585230	T	C	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-6.875;QD=7.41;ReadPosRankSum=-1.431;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:112,35:0.24:147
chr2	96617132	rs75695780	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-7.415;QD=6.22;ReadPosRankSum=-0.545;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:112,30:0.21:142
chr2	96617155	rs76752473	A	G	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-7.489;QD=6.00;ReadPosRankSum=-1.384;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:103,25:0.20:128
chr2	96617194	rs75924615	A	G	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-7.746;QD=5.85;ReadPosRankSum=-0.264;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr2	96617209	rs74343816	G	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-6.407;QD=6.27;ReadPosRankSum=0.118;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr2	96617228	rs78924901	T	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-4.961;QD=1.04;ReadPosRankSum=-0.351;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr2	96617231	rs2443879	G	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-6.491;QD=6.31;ReadPosRankSum=0.306;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr2	96617256	rs2438948	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-5.151;QD=5.42;ReadPosRankSum=0.279;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr2	96617262	rs199817817	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.45;MQRankSum=-4.952;QD=4.45;ReadPosRankSum=-0.102;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr2	96619612	rs143611798	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=54.07;MQRankSum=-4.683;QD=0.72;ReadPosRankSum=0.952;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:47,7:0.13:54
chr2	96619641	rs200910276	AA	CT	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=9.436;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-6.643;QD=5.60;ReadPosRankSum=-1.103;SOR=2.946;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr2	96619688	rs74946480	T	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:138,75:0.35:213
chr2	96619734	rs62154618	C	T	2862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-11.357;QD=10.26;ReadPosRankSum=-2.027;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:165,114:0.41:279
chr2	96619735	rs200095242	A	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.902;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-2.179;QD=0.93;ReadPosRankSum=-0.325;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:237,43:0.15:280
chr2	96619774	rs77522461	G	A	2393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=4.678;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-11.828;QD=10.32;ReadPosRankSum=3.146;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:144,88:0.38:232
chr2	96619799	rs145806545	A	C	2511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.582;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=5.183;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-10.655;QD=12.69;ReadPosRankSum=2.415;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:116,82:0.41:198
chr2	96619804	.	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-9.197;QD=1.41;ReadPosRankSum=0.712;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:150,32:0.18:182
chr2	96619831	rs76870447	T	C	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-10.858;QD=6.89;ReadPosRankSum=0.139;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:95,30:0.24:125
chr2	96619832	rs79037822	A	G	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-4.629;QD=9.46;ReadPosRankSum=-0.236;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:70,35:0.33:105
chr2	96619837	rs77007933	CA	GC	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-7.261;QD=15.63;ReadPosRankSum=-0.365;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:66,47:0.42:113
chr2	96619853	rs201388512	T	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.615;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=2.277;QD=3.64;ReadPosRankSum=-0.308;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:72,13:0.15:85
chr2	96619873	rs111807008	C	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.723;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=2.035;QD=3.36;ReadPosRankSum=-1.503;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr2	96652816	rs200039497	CAA	C	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.392;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=5.218;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-12.613;QD=0.81;ReadPosRankSum=-2.548;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:237,26:0.10:263
chr2	96698185	rs375306245	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	96780716	rs2229169	T	G	13034.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=26.71;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr2	96780986	rs29000568	C	CTCCTCCTCT	16029.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.05;QD=45.28;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr2	96781986	rs3111873	G	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	96795857	rs749458	T	C	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=0.247;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:54,47:0.47:101
chr2	96809543	rs146609611	C	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr2	96858914	rs997548	A	G	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:141,155:0.52:296
chr2	96861159	rs2276650	C	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr2	96874590	rs6725867	TT	CC	8720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.522;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.04;ReadPosRankSum=-0.684;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:232,226:0.49:458
chr2	96919642	rs3852673	C	T	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:66,91:0.58:157
chr2	96934504	rs62153033	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.688;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	96943473	rs3214063	T	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:79,56:0.41:135
chr2	96950487	rs71791481	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.34;ReadPosRankSum=1.176;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	96955480	rs3214058	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	96956315	rs772176	T	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	96957766	rs76926497	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr2	96962859	rs17479466	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	96966661	rs3731930	G	C	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-0.182;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:71,50:0.41:121
chr2	96991492	rs772174	A	G	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:95,142:0.60:237
chr2	96993757	rs2279105	C	T	4333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=3.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.396;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:234,216:0.48:450
chr2	96993884	rs1048675	A	G	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:128,125:0.49:253
chr2	97024802	.	G	A	924.77	.	AC=1;AF=0.500;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	0/1:126,57:0.31:183
chr2	97026576	rs62153915	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr2	97030247	rs2305935	T	C	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=2.215;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:52,82:0.61:134
chr2	97166204	rs3731938	A	G	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:233,195:0.46:428
chr2	97213289	rs113045278	T	G	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:71,64:0.47:135
chr2	97218367	rs6576973	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,67:0.54:124
chr2	97313451	rs60378028	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr2	97315570	rs17685664	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.58;ReadPosRankSum=-1.611;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	97319534	rs17685766	G	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-1.754;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	97357756	rs368566816	CG	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.055;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr2	97365213	rs2292939	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chr2	97465384	rs41286594	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	97494899	.	G	A	1359.77	.	AC=1;AF=0.500;AN=2;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr2	97587049	rs34895357	T	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	97594848	.	T	TTA	264.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	97595109	rs6725927	T	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	97613616	rs1624844	T	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	97613748	rs1623881	C	A	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	97617140	rs1257019	T	C	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	97617227	rs1257018	A	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	97637516	rs6714860	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	97637905	rs6715329	T	C	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	97638038	rs1730120	A	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	97643576	rs1796048	T	C	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	97747978	rs1257094	C	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=10.970;MLEAC=1;MLEAF=0.500;MQ=40.96;MQRankSum=0.868;QD=14.32;ReadPosRankSum=-0.098;SOR=1.908;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	97751782	rs62155549	TG	CA	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=47.84;QD=46.24;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	97751786	rs62155551	G	A	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.09;QD=44.60;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	97757509	rs1257084	C	T	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	97814956	rs4386368	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	97817545	rs80259985	A	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=6.617;MLEAC=1;MLEAF=0.500;MQ=42.54;MQRankSum=-1.818;QD=1.16;ReadPosRankSum=0.805;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:31,4:0.11:35
chr2	97817564	rs33971912	C	CT	1600.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	97817801	rs113485498	C	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.440;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-5.705;QD=2.79;ReadPosRankSum=1.438;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr2	97817811	rs377439829	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.422;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-5.527;QD=3.15;ReadPosRankSum=1.611;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr2	97817817	rs77108155	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=6.187;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-5.435;QD=3.25;ReadPosRankSum=1.321;SOR=0.081;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr2	97817821	rs370583449	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=6.187;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-5.435;QD=3.35;ReadPosRankSum=1.207;SOR=0.081;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr2	97818101	.	T	G	363	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=4;MGOF=48;MMLQ=25;MQ=47.77;NF=8;NR=4;PP=363;QD=33.1476010456;SC=TCAAACTCCTTGGCTTCTCAA;SbPval=0.45;Source=Platypus;TC=25;TCF=18;TCR=7;TR=12;WE=97818122;WS=97818091;set=Platypus	GT:AD:AF:DP	1/0:13,12:0.48:25
chr2	97818114	.	G	T	363	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=1;HapScore=4;MGOF=48;MMLQ=22;MQ=46.88;NF=9;NR=5;PP=363;QD=28.4122294677;SC=CTTCTCAAGTGATACTTCTGC;SbPval=0.33;Source=Platypus;TC=30;TCF=22;TCR=8;TR=14;WE=97818122;WS=97818091;set=Platypus	GT:AD:AF:DP	1/0:16,14:0.47:30
chr2	97818146	rs145799985	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.043;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=11.894;MLEAC=1;MLEAF=0.500;MQ=49.75;MQRankSum=-4.103;QD=7.62;ReadPosRankSum=-1.108;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr2	97818161	rs74715701	C	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=11.099;MLEAC=1;MLEAF=0.500;MQ=49.52;MQRankSum=-4.334;QD=5.96;ReadPosRankSum=0.780;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr2	97818169	rs76008235	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=11.124;MLEAC=1;MLEAF=0.500;MQ=49.17;MQRankSum=-4.149;QD=4.55;ReadPosRankSum=1.903;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr2	97818188	rs141129874	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=10.851;MLEAC=1;MLEAF=0.500;MQ=47.36;MQRankSum=-3.602;QD=3.67;ReadPosRankSum=2.667;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr2	97818192	rs202154783	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=10.296;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-3.602;QD=3.53;ReadPosRankSum=2.618;SOR=1.452;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr2	97818197	rs200340181	G	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=10.318;MLEAC=1;MLEAF=0.500;MQ=48.09;MQRankSum=-3.627;QD=3.17;ReadPosRankSum=2.846;SOR=1.451;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr2	97818236	rs112647905	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=6.435;MLEAC=1;MLEAF=0.500;MQ=51.15;MQRankSum=-3.850;QD=0.57;ReadPosRankSum=0.319;SOR=1.499;set=HC	GT:AD:AF:DP	0/1:64,7:0.10:71
chr2	97818348	rs58438329	A	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	97823971	rs13011421	T	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:6,80:0.93:86
chr2	97827787	rs113653147	G	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.041;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=1.585;QD=4.80;ReadPosRankSum=-0.150;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr2	97827800	rs111338734	A	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=51.80;MQRankSum=0.222;QD=7.47;ReadPosRankSum=-1.133;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	97827818	rs34725305	C	CT	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	97827830	rs201574565	T	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.26;MQRankSum=0.120;QD=8.06;ReadPosRankSum=0.588;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr2	97827839	rs199729690	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=48.30;MQRankSum=0.661;QD=16.68;ReadPosRankSum=0.335;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	97827852	rs200297948	C	T	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:21,4:0.16:25
chr2	97827881	.	G	T	41	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=2;MGOF=34;MMLQ=28;MQ=43.57;NF=3;NR=3;PP=41;QD=12.6285354245;SC=AAATGGTATTGGTATTATAAA;SbPval=0.51;Source=Platypus;TC=19;TCF=8;TCR=11;TR=6;WE=97827889;WS=97827871;set=Platypus	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	97827912	rs201619268	G	C	32.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr2	97827929	.	ATT	GTA	90	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=8;HapScore=2;MGOF=37;MMLQ=28;MQ=45.19;NF=0;NR=3;PP=90;QD=47.8226249541;SC=TGATAATGTTATTTTTTGTGT;SbPval=1.0;Source=Platypus;TC=9;TCF=2;TCR=7;TR=3;WE=97827939;WS=97827919;set=Platypus	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	97828929	rs79735975	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	97828935	rs201360881	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	97828982	rs62153884	C	T	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=8.009;MLEAC=1;MLEAF=0.500;MQ=48.15;MQRankSum=-2.368;QD=13.02;ReadPosRankSum=0.183;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	97829003	rs145086333	CAAAAATAA	C	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=12.800;MLEAC=1;MLEAF=0.500;MQ=48.90;MQRankSum=-3.120;QD=15.19;ReadPosRankSum=1.602;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr2	97829029	rs146874874	G	A	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=13.325;MLEAC=1;MLEAF=0.500;MQ=50.43;MQRankSum=-4.411;QD=10.08;ReadPosRankSum=3.290;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr2	97829030	rs140945055	T	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=13.325;MLEAC=1;MLEAF=0.500;MQ=50.43;MQRankSum=-4.411;QD=10.08;ReadPosRankSum=3.134;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr2	97829204	.	C	T	54	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=28;MQ=54.01;NF=2;NR=3;PP=54;QD=17.7542425094;SC=ATATCAGAAGCCTTCATGACT;SbPval=0.18;Source=Platypus;TC=19;TCF=3;TCR=16;TR=5;WE=97829212;WS=97829194;set=Platypus	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	97829221	.	G	A	30	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=28;MQ=54.77;NF=2;NR=2;PP=30;QD=16.1928031368;SC=GACTGTGGATGACATGAGTAT;SbPval=0.24;Source=Platypus;TC=17;TCF=4;TCR=13;TR=4;WE=97829229;WS=97829211;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr2	97833193	rs75122869	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr2	97833215	rs146634230	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.74;MQRankSum=-4.233;QD=3.16;ReadPosRankSum=1.116;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr2	97833215	.	TCC	CCT	341	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=1;MGOF=40;MMLQ=27;MQ=41.08;NF=8;NR=1;PP=341;QD=43.8297638736;SC=AGAAGTACTTTCCTGTGTTAG;SbPval=0.88;Source=Platypus;TC=36;TCF=28;TCR=8;TR=9;WE=97833225;WS=97833205;set=Platypus	GT:AD:AF:DP	1/0:27,9:0.25:36
chr2	97833217	rs150423357	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.75;MQRankSum=-4.308;QD=3.06;ReadPosRankSum=1.113;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr2	97833342	rs5008284	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.632;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.500;MQ=46.77;MQRankSum=-4.560;QD=1.36;ReadPosRankSum=-0.263;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr2	97833399	rs201829271	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.443;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=31.739;MLEAC=1;MLEAF=0.500;MQ=46.60;MQRankSum=-5.531;QD=0.58;ReadPosRankSum=-0.492;SOR=4.975;set=HC	GT:AD:AF:DP	0/1:95,11:0.10:106
chr2	97833401	rs5832832	T	TATTAATCA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.110;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=31.777;MLEAC=1;MLEAF=0.500;MQ=46.60;MQRankSum=-5.882;QD=3.37;ReadPosRankSum=-0.577;SOR=4.975;set=HC	GT:AD:AF:DP	0/1:91,11:0.11:102
chr2	97833466	rs112133169	C	T	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=82.326;MLEAC=1;MLEAF=0.500;MQ=44.41;MQRankSum=-6.983;QD=7.36;ReadPosRankSum=0.992;SOR=6.067;set=HC	GT:AD:AF:DP	0/1:95,46:0.33:141
chr2	97833553	rs76811792	C	T	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.43;MQRankSum=1.392;QD=15.49;ReadPosRankSum=-1.421;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:41,66:0.62:107
chr2	97833567	rs76160111	A	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.956;MLEAC=1;MLEAF=0.500;MQ=50.73;MQRankSum=1.371;QD=3.30;ReadPosRankSum=-0.211;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:75,22:0.23:97
chr2	97833569	rs78400826	C	T	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=50.83;MQRankSum=2.384;QD=17.17;ReadPosRankSum=1.314;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:39,57:0.59:96
chr2	97833583	rs72945197	C	T	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr2	97851069	rs62154801	A	G	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr2	97877292	rs10171441	C	A	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	97877399	rs10186233	T	C	10821.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr2	97877440	rs35711845	T	C	7026.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:120,322:0.73:442
chr2	97877478	rs10194525	G	A	1721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.319;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:258,104:0.29:362
chr2	98192743	.	A	AAC	257.77	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.25;QD=42.96;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	98192749	rs55777246	T	C	266.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.45;QD=38.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	98196849	rs34131105	G	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.12;QD=45.21;SOR=7.054;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	98196859	rs35904593	T	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.58;QD=42.58;SOR=7.378;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	98205924	rs74177639	C	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	98206188	rs1868445	C	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	98273290	rs11547232	C	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	98273661	rs2290124	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	98274527	rs1042705	G	C	6719.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr2	98276014	rs150112418	CCCTCACCTGCCCTGACCAGAA	C	1670.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	98351654	rs34532595	TG	T	782.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr2	98353847	rs11686881	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	98354139	rs17488834	G	T	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:290,222:0.43:512
chr2	98354511	rs3192177	G	A	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr2	98355990	rs11678558	G	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr2	98376989	rs3214760	TA	T	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	98377512	rs2044458	A	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	98382886	rs895438	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr2	98392302	rs17489259	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr2	98409046	rs12995673	G	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr2	98409565	rs13032265	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	98413781	rs2305143	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.22;ReadPosRankSum=-1.068;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	98418812	rs11340992	CA	C	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	98449796	rs6721250	C	T	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	98460441	rs66477711	TAG	T	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	98460742	rs12712162	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	98475979	rs6707750	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	98525107	rs1317178	T	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	98544058	rs6707719	T	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.440;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	98611833	rs2279825	T	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	98611994	rs2279824	G	T	1016.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=-0.578;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chr2	98709684	rs298917	T	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:125,98:0.44:223
chr2	98795792	rs4851884	C	G	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:133,133:0.50:266
chr2	98795873	rs11419620	T	TG	2892.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:96,100:0.51:196
chr2	98797744	rs4851890	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr2	98804314	rs1466156	G	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	98811075	rs7579916	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	98833445	rs139373261	A	ACCC	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr2	98833449	rs62156666	G	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr2	98844575	rs7606220	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	98844674	rs7601049	C	G	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr2	98853173	rs11889349	G	A	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:107,113:0.51:220
chr2	98862097	rs4851121	A	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.663;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:49,48:0.49:97
chr2	98866980	rs370926569	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-1.765;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr2	98872662	rs113487988	C	CT	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.120;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr2	98887116	rs4851955	G	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr2	98928494	rs7587534	G	A	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	98928929	rs1466944	A	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	98948224	rs13427344	C	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr2	98986510	rs6727412	T	C	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:68,96:0.59:164
chr2	98994309	rs58990587	T	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	98994414	rs937725	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	99149946	rs2278211	G	A	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.359;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:72,78:0.52:150
chr2	99154229	rs2278208	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr2	99156296	rs6734569	G	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr2	99160508	rs3217304	GCA	G	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr2	99163261	rs2278207	T	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	99168953	rs1181562	T	C	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	99172244	rs2278206	A	G	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:219,167:0.43:386
chr2	99175820	rs114428779	G	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr2	99181315	rs3214545	AT	A	2037.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr2	99193496	rs2230388	C	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:64,76:0.54:140
chr2	99219071	.	T	C	26	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=2;MGOF=28;MMLQ=27;MQ=57.68;NF=2;NR=2;PP=26;QD=15.1928031368;SC=AAGATCACACTACTGCACTCC;SbPval=0.48;Source=Platypus;TC=8;TCF=5;TCR=3;TR=4;WE=99219079;WS=99219061;set=Platypus	GT:AD:AF:DP	1/0:4,4:0.50:8
chr2	99219206	rs7585939	T	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.279;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	99220707	rs4851144	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	99224998	rs17034241	C	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr2	99226173	rs1062847	T	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr2	99227409	rs376896625	GT	G	1250.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr2	99234586	rs373790267	A	AT	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.300;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr2	99234601	rs1044918	T	TA	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=6.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=2.679;SOR=1.777;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr2	99237792	rs11892744	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	99271712	rs7557647	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	99272057	rs3754870	T	C	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	99272802	rs11679648	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,71:0.49:145
chr2	99274653	rs2271670	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	99449174	rs2280256	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr2	99725223	rs6542864	A	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	99725479	rs11396964	A	AT	1787.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	99726043	rs6733624	A	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	99743419	rs13008171	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	99757494	.	T	A	2903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=0.502;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:210,151:0.42:361
chr2	99771502	.	C	T	2497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.164;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-1.137;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:79,122:0.61:201
chr2	99771533	rs2516834	C	T	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	99771590	rs2632260	G	T	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	99778985	rs2632277	T	C	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	99779131	rs2516835	T	C	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	99802820	rs6757661	A	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	99804642	rs10865030	T	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	99811894	rs7605843	C	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	99812070	rs1044575	G	A	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	99859954	.	C	CAGATAGAT	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=-0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=1.097;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	99912307	rs11289179	GA	G	154.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	99918180	rs10688800	C	CAA	1051.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	99923088	rs13003899	T	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	99936265	.	TA	T	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.228;QD=2.55;ReadPosRankSum=0.652;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	99938301	rs13017871	C	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	99954636	rs11326784	GT	G	312.74	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr2	99954735	rs4850901	C	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	99976564	rs3828162	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	99995613	rs145805034	A	G	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,64:0.51:126
chr2	100210074	rs1047281	G	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr2	100210642	rs1047265	T	C	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:147,152:0.51:299
chr2	100343557	rs4851223	C	T	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	100454072	rs5832886	C	CT	1674.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:91,55:0.38:146
chr2	100720939	.	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.16;MQRankSum=-0.355;QD=7.38;ReadPosRankSum=-0.355;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	100721050	rs13421952	A	G	51.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	101086894	rs13385681	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr2	101086966	rs13411940	C	T	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:137,110:0.45:247
chr2	101087104	rs13414632	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr2	101087191	rs13388529	G	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	101093556	rs6726587	T	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	101093560	rs72823232	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	101095733	rs7561811	A	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	101096802	rs7565675	A	G	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	101096834	rs13428749	C	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr2	101096860	rs7568519	T	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	101096872	rs7577785	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr2	101096903	rs13393776	T	C	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.247;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,40:0.47:85
chr2	101096960	rs1519654	C	T	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	101125602	rs59673582	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	101126124	rs1829479	T	A	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	101179341	rs2970988	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.85;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	101179341	.	AG	GA,GG	209	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=3;MMLQ=24;MQ=60.0;NF=6,15;NR=1,3;PP=73,209;QD=18.066839266;SC=CTTCTGTGCCAGTTCCTTGAA;SbPval=0.8;Source=Platypus;TC=19;TCF=15;TCR=4;TR=7,18;WE=101179350;WS=101179331;set=Platypus	GT:AF:DP	0/1:0.37:19
chr2	101179342	rs2309848	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-1.281;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	101186088	rs1052117	C	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr2	101188373	rs138885839	C	CCTGTGTATGAGTGA	1316.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr2	101520972	rs5832941	A	AT	285.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	101520985	rs10168430	A	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.58;ReadPosRankSum=0.728;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	101521173	rs57350721	ATT	A	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=0.501;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr2	101541798	rs356651	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr2	101581246	rs7581886	C	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-1.221;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr2	101612051	rs2305158	G	A	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr2	101619283	rs2278724	C	G	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:152,112:0.42:264
chr2	101619321	rs2278723	T	C	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:165,121:0.42:286
chr2	101620856	rs34386800	TA	T	820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-1.091;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:64,60:0.48:124
chr2	101622696	rs34763346	T	TG	1135.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr2	101624471	rs746924	T	C	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:84,98:0.54:182
chr2	101627343	rs35511736	CA	C	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=1.260;QD=6.75;ReadPosRankSum=1.060;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	101627852	rs1062059	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.58;ReadPosRankSum=-0.000;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	101638888	rs3739014	A	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr2	101646144	rs3739015	G	A	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:107,99:0.48:206
chr2	101656726	rs2289953	T	C	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:138,97:0.41:235
chr2	101870073	rs874272	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr2	101883027	rs3736586	T	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr2	101883046	rs1660694	A	G	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	101898412	rs13151	G	C	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	101925026	rs11123868	T	C	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:102,99:0.49:201
chr2	101967346	rs6543032	C	T	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	101971618	rs6753727	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr2	102000210	rs11694978	G	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=0.196;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	102003962	rs116287156	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	102018878	rs11123876	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr2	102027050	rs35603034	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-2.277;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:128,33:0.20:161
chr2	102029273	rs11689348	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr2	102029548	rs1554070	G	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:68,54:0.44:122
chr2	102031176	rs4851434	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	102031489	rs4851435	C	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr2	102035192	rs6709913	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	102038849	rs4851436	T	A	8622.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	102038936	rs7589943	T	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:75,60:0.44:135
chr2	102066878	rs4851448	A	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	102066981	rs74263247	C	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr2	102067083	rs7585228	T	C	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr2	102068715	rs11123884	C	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	102068872	rs4851449	T	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr2	102069002	rs4851450	T	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	102083183	rs4851455	T	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	102314391	.	C	CCCG	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.27;ReadPosRankSum=1.655;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	102314437	rs13430711	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.43;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	102314633	.	G	GGGCAGCC	551.73	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	102315057	rs1567385	A	G	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr2	102459268	rs17801985	A	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	102477453	rs56378209	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	102483883	rs17745869	T	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	102501891	rs57584884	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr2	102785158	rs3213735	G	T	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.345;QD=7.42;ReadPosRankSum=-1.139;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:38,26:0.41:64
chr2	102788409	rs2041747	G	A	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	102792760	rs3917318	A	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	102804538	rs144678772	A	AACC	1200.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr2	102817954	rs2302623	A	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	102828378	rs138145179	A	ATT	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	102979028	rs2287037	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr2	102984279	rs1420098	T	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr2	103001402	rs1035130	C	T	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.838;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:76,65:0.46:141
chr2	103003265	rs2241116	C	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr2	103006387	rs4851570	A	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr2	103039584	rs3817465	A	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	103040247	rs11377261	T	TG	1325.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr2	103040249	rs2272129	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr2	103040945	rs887972	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	103059613	rs1558651	A	G	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	103141583	rs61731289	G	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	103300506	rs6757258	A	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr2	103322496	.	C	CAATGA	191.80	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	103334969	rs1052431	G	A	2452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-0.141;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:94,113:0.55:207
chr2	103335754	rs72828057	T	C	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,58:0.55:105
chr2	103343234	rs3796061	G	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	103375056	rs2732838	T	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,62:0.47:133
chr2	103378581	rs5833037	CT	C	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.000;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr2	103378857	rs2540298	C	G	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:54,68:0.56:122
chr2	103414593	rs140870577	CACTA	C	278.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr2	103414630	.	CACTA	C	454.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	103431404	rs887987	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	104995800	rs4851692	C	T	2607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.007;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:129,121:0.48:250
chr2	105472055	rs186512421	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.624;QD=2.32;ReadPosRankSum=-1.059;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr2	105472469	.	C	A	237.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=-0.495;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	105654716	rs3739160	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr2	105654830	rs3739159	G	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	105665808	rs11538197	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr2	105665941	rs3832069	GTT	G	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	105705507	rs11538198	C	T	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.582;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:45,36:0.44:81
chr2	105706476	rs75278939	T	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr2	105706584	rs147318136	AAAAAC	A	409.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr2	105707766	rs12620254	G	A	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-1.678;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:30,37:0.55:67
chr2	105709023	rs6543282	T	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	105713697	rs15567	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:95,92:0.49:187
chr2	105713868	rs10206662	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.18;SOR=2.701;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	105713868	.	AAGAAAATAT	GAGAAAATAC,GAGAAAATAT	346	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=2,9;NR=16,35;PP=346,287;QD=22.1926597146;SC=TGAAGTTCGTAAGAAAATATA;SbPval=0.89;Source=Platypus;TC=44;TCF=9;TCR=35;TR=18,44;WE=105713885;WS=105713858;set=Platypus	GT:AF:DP	0/1:0.41:44
chr2	105713877	rs57214748	T	C	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.458;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-1.041;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr2	105716266	rs9066	A	G	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	105885961	rs2241797	T	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	105889349	rs11676273	G	A	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	105897261	rs2679833	C	T	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	105924017	rs67600221	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	105953938	rs3217439	G	GC	4104.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	105977761	rs11124029	G	A	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	105979730	rs2278502	C	A	9651.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	106013216	rs11891016	T	C	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	106013248	rs11884297	C	T	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	106471393	rs6543345	T	C	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	106682226	rs4271786	T	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-1.339;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	106682235	rs4266035	C	G	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-1.773;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr2	106682317	rs17032271	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr2	106682365	rs4477942	T	G	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-1.066;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr2	106710668	rs11268588	C	CGCAGGAAGGAAGTGCCACCTT	1000.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=45.49;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	106715342	rs3820891	G	A,T	2094.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/2:0.50,0.50:84
chr2	106717274	rs3739136	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	106717656	rs10177888	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	106742139	rs4851925	C	T	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	106742177	rs3739137	T	A	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	106780015	rs3910716	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;MQ=60.72;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	106780055	rs10631203	C	CTG	1541.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	106782398	rs4851115	C	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	106810583	rs141195431	T	A	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:64,100:0.61:164
chr2	106810727	rs7604916	A	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	106992845	rs56959583	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.655;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.81;MQRankSum=-1.041;QD=8.55;ReadPosRankSum=0.427;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	106992952	rs4641931	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr2	106992963	rs11464214	A	AG	2479.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	106993072	.	C	CT	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=2.523;QD=7.45;ReadPosRankSum=0.993;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	107007576	rs60043380	A	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	107107567	rs2228021	G	C	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	107107694	rs6543414	A	G	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	107107765	rs6543415	C	A	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr2	107118896	rs4340514	T	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	107119136	rs4365459	G	C	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr2	107120812	rs62154001	T	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr2	107121040	rs146000492	T	TA	2402.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr2	107423128	rs3796114	C	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr2	107423188	rs1470591	G	A	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr2	107423395	rs1470590	T	G	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=1.311;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:86,76:0.47:162
chr2	107429801	rs6739022	C	T	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	107446396	rs877693	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	107446430	rs935565	T	C	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	107460474	rs12473361	T	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr2	108626706	.	G	A	1424.77	.	AC=1;AF=0.500;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr2	108863650	rs9646947	A	C	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-1.266;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:106,82:0.44:188
chr2	108863767	rs9308806	A	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	108868736	rs13030422	G	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	108875464	.	AAAACTTGGTCAGGTGATGTTAT	A	5292.73	.	AC=1;AF=0.500;AN=2;DP=368;set=Intersection	GT:AD:AF:DP	0/1:209,143:0.41:352
chr2	108876948	rs4141931	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	108877062	rs4141932	T	A	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=7.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.077;SOR=1.363;set=HC	GT:AD:AF:DP	0/1:62,74:0.54:136
chr2	108915136	rs7590599	T	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr2	108915263	rs4149422	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr2	109006665	rs13021399	T	A	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	109065858	rs2460947	T	C	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	109065919	rs3820957	T	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	109067337	rs12468089	C	T	299.78	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr2	109067359	rs13397470	GT	AA	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	109069008	rs2683797	T	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	109069147	rs34444254	CTTT	C	439.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.83;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	109085373	rs10179602	A	G	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	109086499	.	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=10.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-1.632;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr2	109089404	rs2243888	C	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	109092121	rs3213886	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	109098994	rs3213887	T	C	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	109099477	rs2577613	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	109099572	rs2718698	C	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	109103108	rs3754925	C	T	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	109106381	rs12104502	A	G	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	109123988	rs201688853	C	CT	280.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=1.337;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr2	109277239	rs12472770	C	T	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	109292280	rs7584953	T	C	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	109389078	.	GTCT	G	475.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	109389463	rs826580	G	A	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	109393522	rs58272304	TG	T	1299.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	109403226	rs150687307	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-2.009;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr2	109411248	rs111234702	GAATAT	G	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	109429146	rs975597	T	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	109490104	rs6737810	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	109513321	rs7607563	C	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	109513654	rs12623957	G	A	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	109513786	rs3789738	A	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.16;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	109522720	rs260639	G	A	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.02;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	109526969	rs260632	G	A	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	109527087	rs260631	G	A	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	109527373	rs260630	A	G	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	109539653	rs260643	A	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	109745782	rs200435574	TGGCCGGTCCCCGCCACGCA	T	1384.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	109758196	rs13023759	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	109988215	rs11680644	C	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	110053248	rs7369523	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr2	110372192	rs6594048	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	110373197	rs1560884	G	A	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:99,95:0.49:194
chr2	110552183	.	G	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=0.319;QD=4.72;ReadPosRankSum=0.921;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr2	110855123	rs2004273	G	T	6606.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	110855270	rs5833366	TG	T	1853.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.752;QD=12.87;ReadPosRankSum=-3.709;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:72,72:0.50:144
chr2	110882699	rs2048243	A	G	1604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-1.679;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:68,79:0.54:147
chr2	110886671	.	C	CA	424	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=11;HapScore=2;MGOF=22;MMLQ=26;MQ=60.0;NF=11;NR=10;PP=424;QD=20.8571428571;SC=ATCCTAGTAACAAAAAAAAAG;SbPval=0.47;Source=Platypus;TC=46;TCF=26;TCR=20;TR=21;WE=110886679;WS=110886661;set=Platypus	GT:AD:AF:DP	1/0:25,21:0.46:46
chr2	110886686	rs3838315	A	AGACCAGAT	1767.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr2	110889108	rs11240790	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr2	110905664	rs1509417	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr2	110919041	rs3817140	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	110919321	rs2271244	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	110922064	rs71793890	C	CA	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.666;QD=3.13;ReadPosRankSum=1.792;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:57,32:0.36:89
chr2	110922703	rs11675767	C	T	4392.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:297,223:0.43:520
chr2	110959898	rs11240794	C	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr2	111058854	rs190352639	G	A	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.12;QD=23.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	111397237	rs112515450	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.525;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:64,23:0.26:87
chr2	111406724	rs34802999	T	TCA	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr2	111430276	.	G	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-1.388;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:68,13:0.16:81
chr2	111526090	.	TGA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.332;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr2	111644475	rs10188079	C	T	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	111644491	rs66815319	TA	T	1965.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	111721142	rs138591222	ATGTGTGTG	A,ATG	2859.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.591;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.395;QD=35.75;ReadPosRankSum=-0.082;SOR=1.282;set=HC	GT:AD:AF:DP	1/2:3,17,60:0.21,0.75:80
chr2	111851198	rs67248863	A	T	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.668;QD=9.62;ReadPosRankSum=-1.831;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:47,51:0.52:98
chr2	111886332	rs13429049	C	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	111907691	rs724710	T	C	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	111909247	rs3789068	A	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	112526866	rs137999262	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=46.09;MQRankSum=-3.042;QD=9.63;ReadPosRankSum=-0.944;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	112528649	.	A	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=3.933;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-1.740;QD=4.92;ReadPosRankSum=0.479;SOR=1.376;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr2	112536264	rs76115652	G	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.25;QD=30.38;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	112545981	.	T	G	182	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=28;MQ=46.25;NF=0;NR=10;PP=182;QD=21.6771212547;SC=AGGAAACTGGTGTATAATAGT;SbPval=1.0;Source=Platypus;TC=25;TCF=3;TCR=22;TR=10;WE=112545989;WS=112545971;set=Platypus	GT:AD:AF:DP	1/0:15,10:0.40:25
chr2	112551673	rs200630962	G	A	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr2	112552427	rs190739040	C	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=40.16;MQRankSum=-1.628;QD=13.91;ReadPosRankSum=1.163;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	112582766	rs60136848	CTT	C	1915.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr2	112583476	rs12614297	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr2	112590989	rs3761697	A	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	112605302	rs4848197	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.936;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-4.363;QD=1.04;ReadPosRankSum=-3.505;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:62,11:0.15:73
chr2	112605465	rs4848800	T	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	112616040	.	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=7.224;MLEAC=1;MLEAF=0.500;MQ=47.11;MQRankSum=-1.073;QD=1.41;ReadPosRankSum=-0.069;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr2	112625575	rs6742515	T	C	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-1.324;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:34,45:0.57:79
chr2	112630412	rs141064868	A	C	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	112641149	rs17835589	G	C	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.160;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:99,61:0.38:160
chr2	112641256	rs2037198	G	A	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.20;SOR=2.412;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	112641256	.	GAAAGCTGAGG	AAAAGCTGAGG,AGAAGCTGAGC	1356	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=3;HapScore=3;MGOF=15;MMLQ=28;MQ=60.0;NF=13,4;NR=49,20;PP=1356,1036;QD=22.4317937508;SC=AGGCCAGTCTGAAAGCTGAGG;SbPval=0.53;Source=Platypus;TC=62;TCF=13;TCR=49;TR=62,24;WE=112641274;WS=112641246;set=Platypus	GT:AF:DP	0/1:1.00:62
chr2	112641257	rs7575582	A	G	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=1.425;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr2	112641266	rs71414610	G	C	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=0.678;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr2	112641283	rs12233011	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr2	112754604	rs183012579	A	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	112813391	rs9308665	C	G	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	112817458	rs58182983	A	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	112832684	rs6542026	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	112865517	rs7562848	G	C	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	112896112	rs144500920	C	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-0.486;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr2	112917102	rs1320360	G	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	112933521	rs12711735	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr2	112939548	rs4849050	T	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr2	112940346	.	CAGTG	C	3160.73	.	AC=1;AF=0.500;AN=2;DP=185;set=Intersection	GT:AD:AF:DP	0/1:96,84:0.47:180
chr2	112940578	rs3811643	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	112945188	rs4848281	T	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	112989288	rs114195994	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	112995810	rs2254860	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	113074775	rs5833444	C	CT	525.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.47;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	113079576	rs4507112	C	A	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	113082250	rs59100751	CT	C	3416.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	113089267	rs7601200	T	C	6891.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	113090047	rs4578863	T	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	113190893	.	GGGCCGGGTCGAGGCCGCCGCCGCCC	G	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=1.248;QD=20.64;ReadPosRankSum=-1.164;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	113258671	rs62157516	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	113258916	rs17846193	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr2	113277707	.	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.458;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	113277949	rs62157538	T	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,45:0.48:94
chr2	113300330	rs4849071	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	113305150	rs11123139	G	C	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:99,104:0.51:203
chr2	113307076	.	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.45;ReadPosRankSum=-2.174;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	113308516	rs2304555	T	A	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:120,100:0.45:220
chr2	113308622	rs3816140	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	113309473	rs1545133	C	T	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:113,98:0.46:211
chr2	113310197	rs11351307	CT	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=5.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.276;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr2	113315735	rs57858974	CT	C	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	113321900	rs41280572	T	C	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	113326281	rs6746874	C	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr2	113326502	rs13010814	C	T	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,66:0.46:145
chr2	113344047	rs752992	T	C	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:201,213:0.51:414
chr2	113346413	rs3748024	C	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr2	113346512	rs1047652	A	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr2	113479614	rs13386452	G	A	9669.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr2	113479745	rs34781106	AC	A	7037.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	113480938	.	G	GCACACACACA	843.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=44.41;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	113481439	rs13384583	T	A	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	113481547	rs2063919	A	G	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	113482779	rs4849116	A	C	10828.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr2	113484319	rs2138604	G	A	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	113484353	rs2138605	A	G	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	113484441	rs2138606	T	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	113513825	rs6731822	T	C	8080.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	113514883	rs11311327	AT	A	358.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	113532885	rs3783550	G	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	113535395	rs2071376	G	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	113540205	rs1609682	G	T	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	113588302	rs1143643	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	113590467	rs1143633	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	113671303	rs3811045	T	C	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:137,155:0.53:292
chr2	113671378	rs3811046	G	T	4060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.585;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-1.197;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:133,187:0.58:320
chr2	113671410	rs3811047	A	G	3007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.323;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:106,146:0.58:252
chr2	113671518	rs3811048	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr2	113763575	rs895497	A	G	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	113764419	rs28947168	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	113783570	rs13030063	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr2	113783909	rs6744874	A	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	113785020	rs12711747	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	113785202	rs11673918	G	A	1691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-0.317;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:123,87:0.41:210
chr2	113785727	rs1562304	A	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	113786833	rs3948121	C	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	113788590	rs3752739	C	G	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr2	113789169	rs2305149	C	A	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	113789316	rs2305150	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=1.184;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	113818632	rs2251872	G	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	113818702	rs2515395	G	C	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	113819614	rs2252007	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	113830173	rs3811050	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr2	113830201	rs3811051	T	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	113830563	rs12469822	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	113830582	rs4849150	A	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	113832312	rs6761276	T	C	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	113832333	rs6743376	C	A	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	113877495	rs928940	G	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	113887335	rs2232354	T	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr2	113888900	rs380092	T	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr2	113943063	rs45592842	T	G	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.853;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:45,44:0.49:89
chr2	113953294	.	T	C	2878.77	.	AC=1;AF=0.500;AN=2;DP=278;set=Intersection	GT:AD:AF:DP	0/1:146,131:0.47:277
chr2	113953401	rs923693	A	G	11386.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr2	113953657	rs4849169	A	C	5854.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	113953952	rs4848318	T	C	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	113953973	rs71385890	A	AT	2148.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	113953974	rs10579377	GACA	G	2148.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	113955074	rs902695	G	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	113956371	rs2276561	G	C	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr2	113956821	rs2305133	C	G	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	113977862	rs4849175	T	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	113994417	rs1110839	G	T	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	114000458	rs902691	C	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	114480548	rs17683255	A	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	114480812	rs3835109	A	AAAC	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	114493260	rs12624301	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	114493509	rs142249018	CT	C	854.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr2	114501112	rs3748906	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	114503630	rs58673639	T	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	114513787	rs4538208	C	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr2	114513901	rs4321376	C	T	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:88,80:0.48:168
chr2	114689047	.	C	CT	37	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=0.9999;HP=13;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=1;NR=2;PP=37;QD=14.0;SC=AAAATACGTACTTTTTTTTTT;SbPval=0.57;Source=Platypus;TC=4;TCF=1;TCR=3;TR=3;WE=114689055;WS=114689037;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr2	114691775	.	GT	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.273;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	114691809	rs5833524	G	GT	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=2.121;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	114709476	rs13418557	A	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr2	114714855	rs3748996	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr2	115919677	rs7557011	CT	GC	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	116066984	rs975453	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	116099725	rs843403	A	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr2	116497479	rs1550854	A	G	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	116497528	rs1550853	A	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	116510817	rs2053724	G	C	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	116525960	rs1446495	G	A	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	116548526	rs6735355	A	G	186.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	116548820	rs3738879	C	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	116593675	rs10549769	ATG	A	1725.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.51;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	116593695	rs34212292	GAT	G	1029.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:11,47:0.81:58
chr2	116598546	rs272011	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	116599659	rs272010	A	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	116599927	rs272009	T	C	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	118572471	rs3755492	A	C	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,56:0.77:73
chr2	118583940	rs2303348	C	T	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr2	118677916	rs35891278	T	C	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-0.869;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:56,56:0.50:112
chr2	118688754	rs971754	T	C	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	118692929	rs12151445	G	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr2	118694393	rs2303333	C	G	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr2	118698932	rs72836302	T	C	1803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-3.210;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:104,88:0.46:192
chr2	118704478	rs7580124	T	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	118704503	rs2303329	A	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr2	118705570	rs10186396	A	G	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	118706879	rs1035598	A	G	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	118716166	rs1991102	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr2	118731573	rs748767	G	A	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:56,70:0.56:126
chr2	118732975	rs6722547	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	118735395	rs889899	G	A	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	118743630	rs33975708	G	A	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=11.88;ReadPosRankSum=1.218;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:42,57:0.58:99
chr2	118753097	rs17584619	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr2	118753148	rs10633675	A	ATC	1631.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	118766024	rs10864966	A	G	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	118771566	rs11545372	C	A	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.476;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.931;QD=11.45;ReadPosRankSum=-1.362;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:50,60:0.55:110
chr2	118771663	rs12477588	A	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=27.05;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	118771682	.	TGCCGCC	T	1626.73	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr2	118866033	rs11407321	G	GA	1265.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	119700096	rs2077344	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr2	119734894	rs66466905	AAG	A	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.801;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:74,12:0.14:86
chr2	119739269	rs56216274	C	T	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.684;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:39,44:0.53:83
chr2	119739715	rs76664794	CACT	C	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	119748135	rs3835093	TC	T	849.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,53:0.46:116
chr2	119749477	rs2304708	T	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	119752006	rs61732823	G	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:65,43:0.40:108
chr2	119915132	rs11308896	CG	C	932.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	119915249	rs7556873	T	C	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	119988565	rs838100	G	A	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:78,95:0.55:173
chr2	120003642	rs838083	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr2	120005840	rs67985074	TC	T,TCC	2864.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=187;set=Intersection	GT:AF:DP	1/2:0.62,0.22:161
chr2	120014985	rs838072	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	120015376	rs838071	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	120059895	rs16744	G	GGAAA	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	120059988	rs1890	T	C	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=2.306;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr2	120060082	rs1052500	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr2	120078778	rs1132267	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	120125029	rs2084202	A	G	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	120125053	rs3731608	C	G	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.47;ReadPosRankSum=1.207;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:66,69:0.51:135
chr2	120125058	rs3731607	C	T	1434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=1.283;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:71,70:0.50:141
chr2	120125315	rs8192501	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr2	120125363	rs3091405	C	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr2	120125384	rs3091406	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	120125689	rs8192503	A	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	120125910	rs2276596	C	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=2.026;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	120125936	rs2244135	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	120128482	rs956309	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr2	120187344	rs11123523	A	G	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.121;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr2	120189404	rs4340531	A	G	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	120189433	rs4599130	G	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	120194651	rs3217464	A	AGTGTGC	13030.73	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr2	120197670	rs1042656	G	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=0.182;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	120199140	rs1126839	A	G	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr2	120209689	rs2587692	A	G	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	120219287	.	CAAAA	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.48;ReadPosRankSum=0.209;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	120221585	rs2253870	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr2	120221861	rs57757577	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,54:0.56:96
chr2	120221984	rs2579647	A	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.57;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	120221984	.	ACTGGGTCT	CCTGGGTCC,CCTGGGTCT	125	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=28;MQ=60.0;NF=0,3;NR=6,17;PP=94,125;QD=24.5779791437;SC=TGAATGAGGAACTGGGTCTCC;SbPval=1.0;Source=Platypus;TC=20;TCF=3;TCR=17;TR=6,20;WE=120222000;WS=120221974;set=Platypus	GT:AF:DP	0/1:0.30:20
chr2	120221992	rs6729195	T	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.14;ReadPosRankSum=0.363;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	120230998	rs2579641	G	A	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	120231165	rs2587701	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	120231303	rs2587702	T	C	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	120236332	rs41279776	A	C	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr2	120317621	.	CT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=5.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.582;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr2	120344873	rs6726971	T	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr2	120362407	rs1568540	C	T	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	120362897	rs1521914	T	A	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	120366057	rs11398750	G	GT,GTT	1157.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.923;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=-1.014;SOR=0.969;set=HC	GT:AD:AF:DP	1/2:5,44,15:0.69,0.23:64
chr2	120369244	.	C	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-2.791;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:113,20:0.15:133
chr2	120369300	rs10864986	T	C	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	120383138	rs77292092	CATT	C	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:60,36:0.38:96
chr2	120385094	rs200629080	GATATATAT	G,GAT	1026.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=35.40;SOR=3.098;set=HC	GT:AD:AF:DP	1/2:1,13,15:0.45,0.52:29
chr2	120387637	rs12711931	G	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	120388412	rs2272058	G	A	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	120404629	.	ATT	A,AT	2538.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=3.858;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.733;QD=15.39;ReadPosRankSum=0.451;SOR=0.339;set=HC	GT:AD:AF:DP	1/2:15,40,110:0.24,0.67:165
chr2	120409430	rs1521912	A	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	120409616	rs11686014	G	T	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr2	120414083	rs6761357	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	120438515	rs11684353	G	C	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:142,115:0.45:257
chr2	120438523	rs13011768	A	G	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:120,149:0.55:269
chr2	120438696	rs939777	A	G	11964.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr2	120439230	rs1983406	C	G	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:125,85:0.40:210
chr2	120443443	rs939778	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr2	120620092	.	A	AT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-1.062;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:108,27:0.20:135
chr2	120689905	rs2292361	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	120703842	rs2289581	A	G	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	120704164	rs3214717	A	AT	1610.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	120704166	rs2289580	G	T	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	120714401	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.789;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr2	120718322	rs12618050	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	120718672	rs6737776	T	G	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	120725704	rs10194955	A	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	120776972	rs3216703	TG	T	295.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	120830815	rs3738970	A	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	120831654	.	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=1.192;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr2	120885310	rs1034489	G	A	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr2	120889173	rs3738968	G	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	120918585	rs12617570	A	C	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	120980428	rs11550347	G	C	7216.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	120997869	rs6746072	A	T	357.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=9.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=0.170;SOR=2.495;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr2	121036385	rs12711939	TT	GA	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	121038290	rs113531689	GA	G	259	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.544;QD=11.26;ReadPosRankSum=1.919;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr2	121043403	rs4091515	G	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	121708663	rs10864866	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	121712729	rs10175446	C	T	2024.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.53;MQRankSum=2.567;QD=28.93;ReadPosRankSum=1.154;SOR=3.412;set=HC	GT:AD:AF:DP	1/1:1,69:0.99:70
chr2	121712981	.	C	G	2027.77	.	AC=1;AF=0.500;AN=2;DP=180;set=Intersection	GT:AD:AF:DP	0/1:84,92:0.52:176
chr2	121713022	rs6718382	C	G	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	121713030	rs12614482	G	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	121713041	rs12617878	T	C	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	121726447	rs2592595	G	A	12025.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr2	121729323	rs2677507	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	121729360	rs2592592	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	121729490	rs2592591	C	T	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	121729686	rs2592590	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	121730138	rs3106962	C	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	121740190	rs1968619	C	T	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	121740194	rs1530580	T	G	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.19;SOR=2.970;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	121740505	rs280196	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	121744225	rs2276553	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	121746956	rs3738880	G	T	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:139,113:0.45:252
chr2	121747406	rs12711538	G	A	3764.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:157,171:0.52:328
chr2	121747429	rs10167980	A	G	8166.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	121981950	rs11890430	A	G	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-0.600;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr2	121982011	rs4384798	T	A	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=2.169;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr2	121989489	rs2304667	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr2	122004596	rs2252862	C	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr2	122005928	rs1530124	C	T	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:83,87:0.51:170
chr2	122006851	rs17006283	A	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	122007378	rs2119021	A	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr2	122042750	rs13415738	A	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr2	122520713	.	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=-0.000;DP=45;ExcessHet=3.0103;FS=6.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.73;ReadPosRankSum=-1.039;SOR=0.047;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	124771950	rs115178827	C	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	124979469	rs75221672	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	125192068	rs1425745	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	125232609	rs4411700	G	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr2	125281910	rs17727261	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.362;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:43,28:0.39:71
chr2	125405302	rs924802	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr2	125669260	rs2602655	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	127447763	rs6709803	G	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr2	127453479	rs4538146	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr2	127453664	rs1050967	A	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr2	127657221	rs3795873	C	T	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	127808226	rs2071270	A	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,30:0.36:84
chr2	127808532	rs2043798	G	A	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=1.302;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:32,52:0.62:84
chr2	127808909	rs6745677	G	A	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:64,62:0.49:126
chr2	127811042	rs76414720	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:52,78:0.60:130
chr2	127811712	rs35339559	G	GCA	675.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	127816846	rs140171337	CTG	C	276.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.75;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr2	127819777	rs61748157	C	T	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-2.222;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:96,86:0.47:182
chr2	127821085	rs2071268	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr2	127821453	rs78935905	G	A	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:101,114:0.53:215
chr2	127821499	rs72481904	T	C	3621.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:160,177:0.53:337
chr2	127825968	rs934826	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=1.275;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	127826632	rs67327804	A	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:68,84:0.55:152
chr2	127834136	rs2276575	T	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,65:0.55:118
chr2	127834369	rs62157856	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	127834384	rs13387613	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	127839474	rs11682128	G	A	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:119,128:0.52:247
chr2	127839513	rs61525314	G	A	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:60,70:0.54:130
chr2	127944781	rs11384285	A	AC	447.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	127950904	rs885276	A	T	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	127951458	rs2089109	GC	AT	6763.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	128015367	rs4662718	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	128028792	rs4150499	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	128050134	rs4150402	T	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	128076022	rs9636237	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	128081682	rs12622436	C	A	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr2	128175862	rs1799808	C	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	128175875	rs1799809	G	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	128176195	rs2854700	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	128177377	rs1158867	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	128180872	rs5936	G	T	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	128181028	rs1878844	A	G	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	128181234	rs2069922	GC	G	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	128249441	rs334152	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	128261245	rs138089460	AAAAT	A	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	128271958	rs10432384	C	T	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	128281469	rs2303947	C	T	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr2	128321770	rs2404991	G	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	128338519	rs35136538	T	G	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	128339456	rs4662740	G	T	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=1.297;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	128342547	rs4662741	G	A	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	128345960	rs10928773	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	128346228	rs11673952	A	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	128350578	rs58867441	T	TG	3759.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	128363530	rs11382004	G	GC	1306.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	128385340	rs79948094	C	A	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:177,139:0.44:316
chr2	128400608	rs4662751	C	T	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=2.257;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:49,38:0.44:87
chr2	128411934	rs6707277	A	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr2	128411950	rs6707282	A	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,50:0.49:103
chr2	128415213	rs72843389	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	128421829	rs79110686	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	128464214	rs190867601	A	G	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr2	128526579	rs143186338	T	TTAAA	879.80	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr2	128615500	rs116376815	A	G	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:64,68:0.52:132
chr2	128699833	rs1370229	C	T	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	128708063	rs2461463	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	128744580	rs2948068	A	G	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	128753854	rs1550174	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	128757804	rs10928793	C	T	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	128849114	rs4476299	T	C	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	128860835	rs7355336	A	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	128870808	rs4662775	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	128872595	rs56397917	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr2	128874061	rs10210598	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	128877837	rs4662593	G	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	128878014	rs4662594	G	A	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	128878667	rs6430990	T	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	128878979	rs10636999	C	CTT	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=8.68;ReadPosRankSum=0.955;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr2	128879022	rs6430991	G	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	128880899	rs4480941	T	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	128880993	rs4633871	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	128890878	rs34066685	T	TG	1915.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:91,65:0.42:156
chr2	128913757	rs3738923	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr2	128934400	rs2290111	T	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:119,98:0.45:217
chr2	128936000	rs2290110	T	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.848;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	128936171	rs3217587	TATG	T	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	128939695	rs17793615	A	G	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr2	128939817	rs1699	G	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:73,72:0.50:145
chr2	128941511	.	T	TGTGTGTGTGTGTGA	43.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	128944424	rs744265	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr2	128947505	rs11542865	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-2.583;SOR=0.081;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	129075961	rs61732881	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr2	130737578	rs4233601	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr2	130738163	rs144773989	G	A	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr2	130750371	.	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.95;MQRankSum=-2.035;QD=6.58;ReadPosRankSum=-0.081;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	130750446	rs199529770	C	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.56;MQRankSum=-3.137;QD=12.17;ReadPosRankSum=-0.515;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr2	130897055	rs28751929	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	130897218	rs13006246	T	C	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=0.055;QD=7.78;ReadPosRankSum=-0.398;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr2	130897234	rs3177472	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=0.034;QD=11.36;ReadPosRankSum=-1.659;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr2	130897373	rs74727782	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr2	130899791	rs141892357	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.950;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=5.381;MLEAC=1;MLEAF=0.500;MQ=44.79;MQRankSum=1.429;QD=1.44;ReadPosRankSum=-1.769;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr2	130899804	rs138331089	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.30;QD=25.91;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	130900188	rs28743163	A	G	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr2	130902067	rs60089935	C	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr2	130902194	rs60152285	C	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.111;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=48.40;MQRankSum=0.546;QD=7.06;ReadPosRankSum=1.238;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr2	130902549	rs34080706	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.20;MQRankSum=2.042;QD=10.99;ReadPosRankSum=-1.509;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	130910847	rs4511676	G	A	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:122,153:0.56:275
chr2	130914797	rs145477722	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.14;MQRankSum=1.006;QD=4.68;ReadPosRankSum=0.566;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	130925088	rs10909567	C	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr2	130930819	rs60309319	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr2	130939288	rs1968676	A	G	1516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.313;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:63,71:0.53:134
chr2	130939348	rs1817097	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr2	130940090	rs1968675	G	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr2	130941034	rs34409208	T	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr2	130941065	rs6737226	T	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	130948303	rs12612244	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-2.325;QD=1.58;ReadPosRankSum=-0.438;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr2	130948314	rs71396588	G	GTT	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.921;QD=14.61;ReadPosRankSum=0.781;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	130948317	rs201471106	T	TTTTG	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.426;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-2.585;QD=2.23;ReadPosRankSum=1.465;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:22,3:0.12:25
chr2	130948327	rs10175962	G	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-2.720;QD=4.67;ReadPosRankSum=0.501;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr2	130948334	.	T	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.877;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=7.549;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=2.437;QD=24.63;ReadPosRankSum=0.638;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	130949411	rs10208844	G	T	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.77;QD=28.34;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	130949491	rs60154251	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:154,62:0.29:216
chr2	130949553	rs1052422	A	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.433;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-11.452;QD=2.18;ReadPosRankSum=0.325;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:165,35:0.17:200
chr2	130951488	rs2443644	A	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=34.724;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-11.232;QD=0.46;ReadPosRankSum=-3.025;SOR=2.895;set=HC	GT:AD:AF:DP	0/1:227,34:0.13:261
chr2	130951548	rs1052319	G	A	4604.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:83,199:0.71:282
chr2	130951566	rs7340193	G	A	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-8.064;QD=3.84;ReadPosRankSum=0.449;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:246,82:0.25:328
chr2	130951581	rs1052312	A	G	2574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=-8.760;QD=7.62;ReadPosRankSum=1.017;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:257,81:0.24:338
chr2	130951584	rs7340507	T	C	2568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=-8.884;QD=7.60;ReadPosRankSum=1.291;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:258,80:0.24:338
chr2	130952540	rs56151061	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr2	130952613	rs199666109	C	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.206;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=5.066;MLEAC=1;MLEAF=0.500;MQ=51.33;MQRankSum=-4.465;QD=0.76;ReadPosRankSum=1.171;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:148,30:0.17:178
chr2	130952625	rs3863906	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.613;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=5.105;MLEAC=1;MLEAF=0.500;MQ=51.74;MQRankSum=-4.492;QD=0.21;ReadPosRankSum=3.035;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:173,29:0.14:202
chr2	130952718	rs3853852	G	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.889;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-12.126;QD=3.78;ReadPosRankSum=-0.579;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:176,34:0.16:210
chr2	130952725	rs3863907	C	T	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-12.472;QD=3.65;ReadPosRankSum=-0.922;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:184,34:0.16:218
chr2	130960023	rs4663031	T	C	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:177,138:0.44:315
chr2	130961729	rs201980950	A	AT	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=48.09;MQRankSum=-0.860;QD=3.42;ReadPosRankSum=2.129;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr2	130987792	rs12992461	G	A	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	131119567	rs59423945	C	CT	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=1.440;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:38,23:0.38:61
chr2	131334335	.	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.42;MQRankSum=0.473;QD=6.71;ReadPosRankSum=-0.019;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	131487673	rs272128	A	C	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:139,137:0.50:276
chr2	131519621	rs369947044	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr2	131520663	rs1905235	T	C	8408.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr2	131672950	rs12464119	A	G	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:202,152:0.43:354
chr2	131673316	rs3739129	C	T	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:124,103:0.45:227
chr2	131673702	rs62178867	G	A	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=0.142;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:30,42:0.58:72
chr2	131674285	rs3739127	A	G	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:83,99:0.54:182
chr2	131688587	rs6718816	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr2	131688783	rs61750360	G	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.930;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:68,48:0.41:116
chr2	131703968	rs67022442	G	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	131769237	rs13023338	G	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	132111121	rs11895354	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.76;QD=43.77;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	132111123	rs370814343	T	C	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.76;QD=44.86;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	132111127	rs13410274	G	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.66;QD=46.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	132111153	.	T	TGCCGCCGCCGCC	2979	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=1;HapScore=1;MGOF=40;MMLQ=24;MQ=43.51;NF=4;NR=9;PP=2979;QD=20;SC=CCAGCACCGCTGCCGCCGCCG;SbPval=0.42;Source=Platypus;TC=20;TCF=5;TCR=15;TR=13;WE=132111175;WS=132111143;set=Platypus	GT:AD:AF:DP	1/1:7,13:0.65:20
chr2	132111166	.	G	GCC	1409.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.21;QD=42.72;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	132111167	.	G	C	479	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=1;HapScore=1;MGOF=40;MMLQ=24;MQ=45.24;NF=11;NR=11;PP=479;QD=23.353236934;SC=GCCGCCGCCGGCGCTGGCCTC;SbPval=0.57;Source=Platypus;TC=22;TCF=11;TCR=11;TR=22;WE=132111175;WS=132111143;set=Platypus	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	132111167	.	G	GCCGCCGCCGC	1409.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.96;QD=45.48;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	132120501	rs146351322	C	CT	3934.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	132121350	rs371054387	G	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.78;QD=27.52;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	132201663	rs1317139	T	C	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:129,130:0.50:259
chr2	132201778	rs111435137	G	A	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:132,142:0.52:274
chr2	132227611	.	A	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.69;MQRankSum=-2.450;QD=12.11;ReadPosRankSum=0.120;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	132227620	rs187243483	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.61;MQRankSum=-2.724;QD=10.43;ReadPosRankSum=0.701;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	132229542	rs111449323	A	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr2	132229579	rs115112762	A	T	3206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-9.642;QD=16.97;ReadPosRankSum=3.572;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:106,83:0.44:189
chr2	132229583	rs16848770	T	C	3203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-10.128;QD=16.18;ReadPosRankSum=3.500;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:112,86:0.43:198
chr2	132229720	.	T	G	1438.77	.	AC=1;AF=0.500;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	0/1:102,72:0.41:174
chr2	132233606	rs7571932	C	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	132233654	rs7571947	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	132233676	rs7561542	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr2	132233740	rs2622026	C	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr2	132233755	rs7561673	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:67,41:0.38:108
chr2	132233785	rs7561684	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:64,42:0.40:106
chr2	132235619	rs141836251	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr2	132237056	rs7423999	A	C	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.461;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.631;MLEAC=1;MLEAF=0.500;MQ=52.47;MQRankSum=-7.494;QD=6.64;ReadPosRankSum=-2.152;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:117,33:0.22:150
chr2	132237059	rs7424438	T	G	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.606;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.500;MQ=52.35;MQRankSum=-7.737;QD=6.87;ReadPosRankSum=-2.559;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:113,32:0.22:145
chr2	132237068	rs142152994	G	C	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.218;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=52.20;MQRankSum=-6.948;QD=5.64;ReadPosRankSum=-1.605;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:101,26:0.20:127
chr2	132237150	rs28462272	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	132238169	rs2463337	A	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.865;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=36.080;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-10.959;QD=3.00;ReadPosRankSum=-0.626;SOR=3.890;set=HC	GT:AD:AF:DP	0/1:117,26:0.18:143
chr2	132238286	rs111626841	C	T	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:159,124:0.44:283
chr2	132238350	rs111758039	C	CAGCA	4563.73	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:116,118:0.50:234
chr2	132240047	rs145801195	T	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.240;QD=10.88;ReadPosRankSum=0.228;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr2	132241704	rs11553182	C	T	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr2	132241731	rs75021268	T	C	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:70,90:0.56:160
chr2	132248330	rs111311763	G	GGC	2715.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:82,70:0.46:152
chr2	132248336	rs59539470	C	G	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:85,75:0.47:160
chr2	132248379	rs12469517	T	G	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:93,89:0.49:182
chr2	132248584	rs10182785	T	C	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	132248632	rs10179938	A	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr2	132248876	rs6709245	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	132249372	rs6706952	C	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	132249916	rs72262008	AC	A	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr2	132258153	.	C	CACCTGCTACCTACCTGCTACCTGCTACCTG	1434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=9.156;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-0.187;QD=16.12;ReadPosRankSum=-1.702;SOR=1.648;set=HC	GT:AD:AF:DP	0/1:54,35:0.39:89
chr2	132265995	rs116381298	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr2	132266142	rs12691988	G	C	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:124,94:0.43:218
chr2	132266246	rs7591223	T	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr2	132273778	rs149331019	G	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;MQ=59.77;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	132274370	rs113719235	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	132275343	rs12691998	G	T	4272.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:218,214:0.50:432
chr2	132275396	rs2277878	T	C	4617.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:213,229:0.52:442
chr2	132277962	rs7560296	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:61,34:0.36:95
chr2	132286046	rs3101992	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr2	132286061	rs60469601	A	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr2	132287824	rs10187823	C	T	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:80,67:0.46:147
chr2	132288102	rs116538008	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.051;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=11.830;MLEAC=1;MLEAF=0.500;MQ=48.00;MQRankSum=-4.359;QD=1.38;ReadPosRankSum=0.364;SOR=3.706;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr2	132288362	.	T	C	314	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=24;MQ=43.57;NF=4;NR=21;PP=314;QD=13.9508485019;SC=AGCCTCTCCATGTCAAGCTTC;SbPval=1.0;Source=Platypus;TC=93;TCF=43;TCR=50;TR=25;WE=132288370;WS=132288352;set=Platypus	GT:AD:AF:DP	1/0:68,25:0.27:93
chr2	132290399	rs57007130	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr2	132290464	rs13660	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr2	132491544	rs7599401	C	G	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	132494171	rs4850247	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr2	132494182	rs11690978	G	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr2	132494272	rs4850248	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	133014491	.	C	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.027;ClippingRankSum=0.000;DP=327;ExcessHet=3.0103;FS=11.496;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-6.161;QD=3.44;ReadPosRankSum=4.892;SOR=1.622;set=HC	GT:AD:AF:DP	0/1:273,46:0.14:319
chr2	133014497	.	G	C	7998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.813;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=4.689;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-2.207;QD=22.72;ReadPosRankSum=-2.877;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:154,198:0.56:352
chr2	133014504	rs79813268	G	T	8419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.294;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=6.707;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-2.607;QD=22.04;ReadPosRankSum=-3.699;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:159,223:0.58:382
chr2	133014510	rs9287404	T	C	11515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-7.344;QD=27.88;ReadPosRankSum=-1.038;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:119,294:0.71:413
chr2	133014592	.	G	A	1837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.647;ClippingRankSum=0.000;DP=1055;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-21.017;QD=1.75;ReadPosRankSum=-0.810;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:888,164:0.16:1052
chr2	133014602	rs75245503	G	C	33322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=1138;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-10.418;QD=29.39;ReadPosRankSum=2.055;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:320,814:0.72:1134
chr2	133014612	rs74853538	A	C	34539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.703;ClippingRankSum=0.000;DB;DP=1179;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-10.017;QD=29.42;ReadPosRankSum=2.018;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:323,851:0.72:1174
chr2	133014619	rs78327226	C	T	5153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=1227;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-15.072;QD=4.23;ReadPosRankSum=1.140;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:1022,197:0.16:1219
chr2	133014640	rs78867621	C	T	6787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=1237;ExcessHet=3.0103;FS=3.357;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-15.945;QD=5.53;ReadPosRankSum=2.444;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:998,230:0.19:1228
chr2	133014651	rs111708138	A	AC	31616.73	.	AC=1;AF=0.500;AN=2;DB;DP=1231;set=Intersection	GT:AD:AF:DP	0/1:289,916:0.76:1205
chr2	133014657	rs113237573	G	A	7298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=1246;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-15.299;QD=5.91;ReadPosRankSum=1.996;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:968,268:0.22:1236
chr2	133014678	rs72869462	A	G	36087.77	.	AC=1;AF=0.500;AN=2;DB;DP=1218;set=Intersection	GT:AD:AF:DP	0/1:279,930:0.77:1209
chr2	133014703	rs72869464	T	C	36882.77	.	AC=1;AF=0.500;AN=2;DB;DP=1137;set=Intersection	GT:AD:AF:DP	0/1:241,887:0.79:1128
chr2	133014721	rs72869465	T	C	33568.77	.	AC=1;AF=0.500;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	0/1:213,829:0.80:1042
chr2	133014751	rs75204936	T	C	9675.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:373,436:0.54:809
chr2	133014764	.	C	A	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DP=730;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.203;QD=1.72;ReadPosRankSum=0.086;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:597,127:0.18:724
chr2	133014776	rs72869466	CA	TG	13172.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;JOINED;set=Intersection	GT:AD:AF:DP	0/1:297,337:0.53:634
chr2	133014786	rs72869468	G	A	4850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.238;QD=8.72;ReadPosRankSum=0.033;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:403,153:0.28:556
chr2	133075726	rs2598810	A	G	5714.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:125,229:0.65:354
chr2	133075904	rs113311843	C	CA	11480.73	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:163,412:0.72:575
chr2	133425912	rs2709533	C	T	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	133426183	rs2709532	G	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	133472385	rs11329925	CA	C	720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.166;QD=10.01;ReadPosRankSum=-0.434;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:15,57:0.79:72
chr2	133489401	rs17397142	A	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:60,91:0.60:151
chr2	133489601	rs56284623	A	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr2	133539460	rs6717116	A	T	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	133539566	rs6730282	G	A	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	133540605	rs13016342	G	T	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:111,104:0.48:215
chr2	133541107	rs16841277	T	A	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr2	133541444	rs12691829	T	C	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	133541454	rs12691830	A	G	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	133541575	rs12611515	C	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr2	133542014	rs12616282	T	C	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	133542545	rs10191147	G	A	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:113,112:0.50:225
chr2	133542574	rs61995744	C	T	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:124,111:0.47:235
chr2	133542585	rs17325719	C	G	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:107,127:0.54:234
chr2	133554288	rs1868076	A	G	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	133618220	rs1447549	A	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr2	133636209	.	ACACACACACACACACACACG	A	380.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=12.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=1.970;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr2	133636211	rs140434127	ACACACACACACACACACG	A	217.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=6.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.781;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr2	133683658	rs2577634	G	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr2	133881219	rs2278456	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	133887421	rs13004057	G	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	133971448	rs13393624	T	A	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:68,60:0.47:128
chr2	134884700	rs6430498	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr2	135076111	rs4954134	C	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	135096097	rs7598410	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	135160755	rs3748900	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chr2	135214259	rs2289470	G	A	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=0.022;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:66,63:0.49:129
chr2	135214418	rs56024138	AT	A	174.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	135470735	rs2276161	A	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	135471290	rs4953925	T	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr2	135602601	rs6430545	T	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr2	135629927	rs12469941	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr2	135677268	rs3769024	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=0.364;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	135677471	rs3841862	A	AGTTT	1103.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr2	135694354	rs1823118	G	C	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.66;ReadPosRankSum=-1.130;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:24,29:0.55:53
chr2	135694379	rs1374289	C	T	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr2	135700151	rs3816339	A	T	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.697;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr2	135703338	rs57267734	CT	C	790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.948;QD=8.69;ReadPosRankSum=0.813;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:42,49:0.54:91
chr2	135703650	rs201814332	G	GT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.442;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:121,29:0.19:150
chr2	135705558	rs1979033	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	135710322	rs10166142	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr2	135711516	rs3814355	C	T	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-1.364;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:76,62:0.45:138
chr2	135711657	rs3814354	G	A	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:130,166:0.56:296
chr2	135740876	rs60969462	A	G	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:109,115:0.51:224
chr2	135741061	rs12623713	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	135745392	rs11888766	G	A	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:94,98:0.51:192
chr2	135745545	rs11899779	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:78,59:0.43:137
chr2	135745722	rs10928526	A	G	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:140,100:0.42:240
chr2	135748872	rs144837592	AAAAAC	A	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-0.709;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	136103038	.	C	CA	213.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	136379194	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=2.004;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr2	136467164	rs2304367	C	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	136527443	rs113881162	G	GTGAT	3291.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	136529897	rs200613240	T	TA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=2.418;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr2	136545844	rs1042712	C	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	136546110	rs2278544	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	136548169	rs892716	A	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	136548192	rs1808756	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	136555659	rs2322659	T	C	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	136558157	rs748841	C	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	136561557	rs2304371	G	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	136565028	rs10928549	C	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	136569848	rs12988076	C	A	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	136575199	rs6719488	G	T	9187.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	136575534	rs4954449	T	C	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	136594158	rs2236783	G	A	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	136610598	rs4988226	A	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	136614255	rs309180	G	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	136622825	rs309177	A	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.64;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	136873549	rs2680880	A	T	1980.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	137639616	rs1465612	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	137640006	rs11298935	CT	C	377.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	137814477	rs17727482	C	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,65:0.50:130
chr2	138000226	rs7605259	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	138030271	rs10182152	G	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr2	138163391	rs1551281	T	C	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	138169158	rs1463285	T	C	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	138208631	rs1453302	G	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr2	138237038	rs1584435	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	138420996	rs10206850	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	138721942	rs67985366	ATT	A	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.35;ReadPosRankSum=0.398;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	138727607	rs3100702	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	139045491	rs189025416	T	C	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.520;QD=11.85;ReadPosRankSum=1.564;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr2	139045855	rs35998722	C	T	6783.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	139045972	rs6733578	T	C	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	139045987	rs13033503	C	T	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	139046301	rs12691943	A	G	12193.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr2	139046385	rs13382964	G	A	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	139308397	rs148464901	T	TTCTCTC	645.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=40.36;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	139429068	rs10803570	G	A	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	139429286	rs60855564	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr2	140992337	rs13387241	C	A	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	141004513	rs11895946	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	141004529	rs2129483	A	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	141032088	rs1386356	C	T	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	141083458	rs200255503	AAC	A	4090.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:126,123:0.49:249
chr2	141093151	rs75710281	T	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr2	141110440	rs16843835	G	A	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	141113798	rs13017246	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	141128779	rs76554185	C	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=1.769;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	141128977	rs634115	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	141130695	rs16843864	C	T	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:104,116:0.53:220
chr2	141199904	rs1878741	C	T	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.48;ReadPosRankSum=-0.812;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	141199904	.	CTT	TTG	731	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=15;NR=1;PP=731;QD=49.0292421789;SC=CTCCAGGCTTCTTGTAAAGTA;SbPval=0.87;Source=Platypus;TC=32;TCF=28;TCR=4;TR=16;WE=141199914;WS=141199894;set=Platypus	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	141199906	rs183989620	T	G	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.81;ReadPosRankSum=-1.118;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr2	141202369	rs11902052	G	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	141214996	rs16843999	T	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr2	141232927	rs76196699	T	C	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr2	141242882	rs112109442	A	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr2	141242918	rs34488772	T	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr2	141245204	rs74789055	T	C	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.032;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr2	141250011	rs139642361	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	141250074	rs76011498	A	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr2	141259376	rs35164907	G	A	3925.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:187,192:0.51:379
chr2	141260507	rs4450541	T	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:62,66:0.52:128
chr2	141260668	rs4444457	A	G	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	141260754	rs76928339	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr2	141267744	rs1948051	T	C	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	141274576	rs4954672	T	C	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr2	141283603	rs1352047	T	G	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	141284041	rs7562323	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	141298467	rs6729619	A	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr2	141298674	rs13013854	T	C	2858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=4.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=0.466;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:108,80:0.43:188
chr2	141298682	rs11694934	G	C	2838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=6.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=0.333;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:100,75:0.43:175
chr2	141298749	rs11694970	G	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr2	141299317	rs9287535	A	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr2	141359287	rs1441465	C	T	190.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	141460244	rs148462856	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	141473409	rs10716305	CA	C	165.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	141473505	rs4954852	A	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr2	141474402	rs5834770	G	GA	1042.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr2	141474456	rs1372255	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	141527013	rs13002947	A	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	141528592	rs7599219	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	141533573	rs13009144	A	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	141533662	rs996361	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	141571329	rs3749010	T	C	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	141598473	rs35745624	A	AT	4883.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	141625673	rs78597279	G	A	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:89,88:0.50:177
chr2	141625834	.	T	TA	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.063;QD=4.53;ReadPosRankSum=0.673;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr2	141707694	rs1980343	C	T	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	141709419	rs1429348	T	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr2	141747249	rs1429365	A	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr2	141747293	rs1429366	T	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr2	141751461	rs11678316	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr2	141751592	rs13007735	G	A	1615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=0.352;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:121,88:0.42:209
chr2	141816621	rs1525579	A	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	141945949	rs1249434	C	T	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	141987087	rs79330716	G	A	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	142237868	rs4264514	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr2	142356614	.	TCCCCCCCGC	T	130.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=26.17;ReadPosRankSum=1.282;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr2	142356633	.	C	T	204.88	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=22.76;ReadPosRankSum=0.589;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr2	142567738	rs28529494	G	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.294;QD=6.31;ReadPosRankSum=2.809;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	142567910	rs12990449	T	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr2	143642963	.	G	A	782.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr2	143685122	rs3768849	T	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	143713700	rs351674	T	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=0.917;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	143718459	rs3069632	T	TAAAA	604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.295;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr2	143787161	rs6429999	C	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.30;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	143787274	rs6430000	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	143913004	rs2580857	T	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	143973860	rs1451805	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	144193151	rs11438710	C	CTT	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=6.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.23;ReadPosRankSum=0.404;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	144194565	rs17230746	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	144934655	rs5834992	A	AG	287.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	145121339	rs10206546	G	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	145146457	.	GA	G	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.185;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr2	145255210	rs12691693	T	C	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.010;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:47,66:0.58:113
chr2	145255399	.	TATATATATATATGTCATTCTCAACATATATATATATATGTCATTCTCAAC	T	200.74	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	147596973	rs4411641	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	148602544	rs70992177	C	CT	32.25	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	148705483	rs193268960	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=1.345;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr2	148733548	rs2307399	T	TA	474.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr2	149240657	rs5835195	GT	G	1180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.284;QD=6.90;ReadPosRankSum=-1.000;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:82,89:0.52:171
chr2	149243260	rs2121344	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	149246906	rs111476224	C	CT	582.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr2	149259949	rs73003524	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr2	149449321	.	A	AT	1519.73	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:66,77:0.54:143
chr2	149511757	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	149798213	rs73970609	G	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr2	149799216	rs61734995	T	C	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:104,101:0.49:205
chr2	149803357	rs73962006	A	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr2	149806388	rs60169973	C	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,67:0.46:146
chr2	149835264	rs60693991	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr2	149837739	rs35917197	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.10;ReadPosRankSum=-0.000;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	149838132	rs11901442	T	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	149853960	rs6738277	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr2	150320627	rs34341723	TA	T	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.015;QD=5.70;ReadPosRankSum=-0.162;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:44,41:0.48:85
chr2	150427516	rs4500908	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr2	150428849	.	C	CAAAAAAAAAAAAA	437.73	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=109.43;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	150432377	rs12232959	C	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr2	150432976	rs11545261	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	150433128	rs11680630	C	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	150443689	rs4667420	C	G	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	150443813	rs4667419	C	T	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	151328284	rs11338446	GA	G	2028.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:3,104:0.97:107
chr2	151343988	rs56303053	A	AT	800.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.70;MQRankSum=0.444;QD=23.54;ReadPosRankSum=1.384;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:3,31:0.91:34
chr2	151900223	rs7589036	T	C	11785.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr2	151900389	.	TTAAAAACAAAAA	T	484.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.278;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-1.326;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:120,34:0.22:154
chr2	151900390	.	TAAAAACAAAAAC	CAAAAACAAAAAC	2987	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000,1.0000;HP=5;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=6,1;NR=14,55;PP=329,2987;QD=18.1885606274;SC=ATTGTGAGCTTAAAAACAAAA;SbPval=0.38;Source=Platypus;TC=151;TCF=37;TCR=114;TR=20,56;WE=151900409;WS=151900379;set=Platypus	GT:AD:AF:DP	0/1:131,20:0.13:151
chr2	151900390	rs150701043	TAAAAACAAAAAC	T	1706.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr2	152108261	rs4665119	T	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	152109159	rs289885	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	152117957	rs2271813	T	C	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	152132304	rs374549986	G	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:109,103:0.49:212
chr2	152236045	rs35060021	TA	T	185.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.654;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	152267672	rs7585604	G	A	173.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	152273503	rs6735771	G	A	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	152295141	rs16830036	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr2	152298562	rs138147981	T	TTTTTA	402.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=36.61;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	152303171	rs2432941	G	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr2	152311570	rs2444263	G	A	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:126,124:0.50:250
chr2	152314385	rs16830047	G	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr2	152314547	rs35044903	C	CA	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	152315549	rs2444260	G	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	152317905	rs374480238	AT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=-0.778;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	152318713	rs59316798	TATC	T	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	152320118	rs2123465	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr2	152322095	rs2444257	A	T	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:123,122:0.50:245
chr2	152331418	rs1065177	C	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.053;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	152342481	rs16830090	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr2	152349026	rs2288195	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	152350462	rs4664455	T	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr2	152352843	rs7575451	C	G	2285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.719;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:147,121:0.45:268
chr2	152359276	rs201290038	AT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-1.681;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr2	152360136	.	AT	A	33	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=5;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=0;NR=2;PP=33;QD=29.5;SC=AATAGTAAAAATTTTTACTAC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=152360144;WS=152360126;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr2	152369117	rs13023600	T	C	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	152374800	rs16830136	G	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr2	152382454	rs6721666	C	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr2	152383913	rs2288198	T	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr2	152387553	rs4664475	T	C	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.698;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:73,73:0.50:146
chr2	152388228	rs60806638	G	C	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:142,122:0.46:264
chr2	152388415	rs56026241	AT	A	986.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr2	152394534	rs3732310	T	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr2	152396726	rs66541369	T	TA	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr2	152402515	.	T	TA	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=5.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.865;SOR=0.244;set=HC	GT:AD:AF:DP	0/1:36,30:0.45:66
chr2	152403014	rs4664486	C	T	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.609;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:61,38:0.38:99
chr2	152404294	rs2288201	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	152409416	rs2288203	C	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr2	152409809	rs4575719	C	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	152417064	rs2288206	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	152422076	rs2288210	C	G	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:100,113:0.53:213
chr2	152422087	rs2288211	A	G	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:103,114:0.53:217
chr2	152424933	rs3214503	T	TA	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.056;QD=5.52;ReadPosRankSum=-1.603;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	152425692	rs3732312	T	C	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr2	152427249	rs7568873	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr2	152432311	rs33988153	T	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr2	152472417	rs62174707	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	152474001	rs4303716	A	G	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.381;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	152481977	rs10186482	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	152490219	rs6709886	A	G	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:96,80:0.45:176
chr2	152490458	rs6710212	A	G	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	152496526	rs6713162	A	G	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:54,74:0.58:128
chr2	152500449	rs13013209	C	G	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:87,85:0.49:172
chr2	152510445	.	G	A	842.77	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr2	152511778	rs10930723	A	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-0.940;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:31,21:0.40:52
chr2	152515683	rs75807392	G	A	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:110,133:0.55:243
chr2	152520027	rs12620077	A	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:64,92:0.59:156
chr2	152521096	rs10170273	C	T	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-1.877;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:67,60:0.47:127
chr2	152525471	rs58903550	A	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,53:0.60:89
chr2	152527572	rs7426114	C	T	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:131,104:0.44:235
chr2	152527608	rs34577613	C	T	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:93,116:0.56:209
chr2	152531077	rs6711382	A	G	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:113,120:0.52:233
chr2	152531781	rs12618063	C	A	4267.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:204,212:0.51:416
chr2	152536498	rs6735208	T	A	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,64:0.50:128
chr2	152552062	rs6433569	A	C	3654.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:191,177:0.48:368
chr2	152566433	rs12464543	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr2	152573902	rs34733773	A	AGGC	2606.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:112,68:0.38:180
chr2	152573981	rs4611637	A	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:148,98:0.40:246
chr2	152580815	rs35686968	C	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr2	152581866	rs4300824	T	C	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:150,135:0.47:285
chr2	152584153	rs4664499	A	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	152684704	rs150910136	A	AC	1052.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:111,58:0.34:169
chr2	152695783	rs1805029	C	T	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-1.155;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:38,67:0.64:105
chr2	152698480	rs1805028	C	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=9.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.213;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr2	152729138	rs770609	T	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	152827973	rs7567588	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chr2	152828281	rs7607341	C	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr2	152988610	rs5835408	C	CT	2360.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:79,77:0.49:156
chr2	152992237	rs12612031	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-1.611;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	153000337	rs12617139	T	A	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-0.222;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr2	153001359	rs142275525	GAT	G	1345.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr2	153006452	rs13003423	G	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	153192242	rs147562333	C	A	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,72:0.49:148
chr2	153192324	rs2003332	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr2	153378459	rs4664114	T	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	153378574	rs4664592	A	G	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	153378652	rs4664593	G	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	153405594	rs1155779	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr2	153405684	rs12468789	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	153415170	rs6705427	A	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr2	153415244	rs72868279	T	C,TC	2629.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.23;ReadPosRankSum=0.913;SOR=1.578;set=HC	GT:AD:AF:DP	1/2:2,53,32:0.61,0.37:87
chr2	153415376	rs6434098	T	G	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr2	153417325	rs6713836	A	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	153435288	rs12693407	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	153435434	rs16831399	C	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr2	153463984	rs72210499	TACAC	T	194.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	153471255	rs70974877	T	TCAAAACAAAACAAAACAAAA	372.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr2	153473435	rs7596408	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr2	153473521	rs12693415	A	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr2	153473794	rs2304556	T	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	153475253	rs13413144	A	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	153476066	rs5835439	G	GCCA	2386.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	153478931	rs7609122	T	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	153481943	rs2346532	T	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	153483281	rs9989874	A	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr2	153492910	rs1561267	G	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	153497168	rs1465818	C	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	153502243	rs71394494	G	GTATT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.89;ReadPosRankSum=2.222;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	153504552	rs12693429	G	A	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	153514583	rs6713779	G	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	153519524	rs1036526	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	153520782	rs3762507	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	153520819	rs3762506	C	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	153529361	rs2304559	T	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	153535670	rs10166987	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	153549814	rs10172024	G	C	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.56;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	153549814	.	GTGTAC	CTGTAC,CTGTAT	1035	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=84,40;NR=34,20;PP=1035,794;QD=9.06585773345;SC=TGGTCACCAAGTGTACACAAG;SbPval=0.52;Source=Platypus;TC=118;TCF=84;TCR=34;TR=118,60;WE=153549827;WS=153549804;set=Platypus	GT:AF:DP	0/1:1.00:118
chr2	153549819	rs13003670	C	T	1643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.605;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=5.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=0.257;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:67,77:0.53:144
chr2	153572438	rs2346548	C	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	153576489	rs183696101	T	C	2031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.771;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.566;QD=9.19;ReadPosRankSum=0.390;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:121,100:0.45:221
chr2	153576548	.	G	GTCAGTCTTAAATGATTGGCTGCCAATGTTTCATTTCTTTATCATTCCCCTCCCCCCTTTTTTACCCTTTTTTGAATGTGCATGGAATGTAAATTA	5210.73	.	AC=2;AF=1.00;AN=2;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=54.85;SOR=1.561;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	153576580	.	A	ATTTC	2172	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=1;MGOF=26;MMLQ=25;MQ=59.11;NF=0;NR=42;PP=2172;QD=52.3571428571;SC=CCAATGTTTCATTTATCATTC;SbPval=1.0;Source=Platypus;TC=74;TCF=2;TCR=72;TR=42;WE=153576588;WS=153576570;set=Platypus	GT:AD:AF:DP	0/1:32,42:0.57:74
chr2	153577013	rs9646744	G	A	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	154800874	rs4318348	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr2	155099537	rs12477393	T	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	155265623	rs1405936	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr2	155294364	.	TAAAAA	T	43.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr2	155306884	rs201440806	A	AT	591.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr2	155306885	rs697648	C	T	2088.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	155555195	rs5835535	T	TC	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.616;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr2	157183211	rs35479735	TC	T	3381.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	157189011	rs834836	G	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	157406249	rs2116665	G	A	6483.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr2	157406296	rs2116664	A	C	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	157425502	rs36082652	C	CT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-0.715;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	157425972	rs17266469	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr2	157427593	rs1469652	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	157427837	rs1469651	C	A	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	157427850	rs1469650	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	158115129	rs61748237	A	T	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=1.257;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:115,84:0.42:199
chr2	158157361	rs3214040	C	T	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	158162475	rs3214039	C	T	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	158162521	rs3816595	T	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	158165004	rs6728956	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	158184121	rs143310506	A	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	158272577	.	C	T	1788.77	.	AC=1;AF=0.500;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	0/1:95,88:0.48:183
chr2	158275111	.	TA	T	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.136;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr2	158395079	rs7576514	C	G	1930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.699;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:135,97:0.42:232
chr2	158400908	rs6728987	C	T	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:58,75:0.56:133
chr2	158401137	rs10432556	T	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr2	158626980	rs1146031	C	T	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	158636910	rs2227861	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:99,91:0.48:190
chr2	158637137	rs1866885	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=9.318;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.636;QD=2.40;ReadPosRankSum=1.406;SOR=0.167;set=HC	GT:AD:AF:DP	0/1:57,25:0.30:82
chr2	158655883	rs111834201	C	CAA	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	158978178	rs10804389	C	G	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.315;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-0.213;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:36,40:0.53:76
chr2	159028800	rs2222390	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	159035344	rs3836162	A	AT	1049.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr2	159077019	rs958671	A	C	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	159166069	rs7559772	T	C	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	159312733	rs1111212	C	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	159434492	rs2356188	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	159434500	rs2356189	A	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	159477709	rs79473991	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr2	159519981	rs78711128	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr2	159520085	rs3771679	G	C	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	159522879	rs2248854	C	G	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	159530651	rs2711034	A	T	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	159534863	rs2356505	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	159534874	rs2356506	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	159534889	rs2711040	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr2	159651973	rs1356173	G	A	6657.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	159663616	rs12535	G	A	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	159672442	rs10016	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	159683006	.	C	CATATATATATATATAT	183.94	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.79;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	159954175	rs34588551	C	T	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	160019863	rs12466551	A	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	160033174	rs759034	A	G	268.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	160034919	rs4665031	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	160035195	rs12988603	C	T	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:162,133:0.45:295
chr2	160035207	rs6748288	T	C	7591.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr2	160042430	rs13389867	G	A	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:137,142:0.51:279
chr2	160055448	rs13430891	T	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr2	160073881	rs1035058	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	160073895	rs4665042	G	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	160074181	rs2288107	G	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	160075886	rs146371641	G	GC	2216.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:93,83:0.47:176
chr2	160076026	rs2303334	C	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr2	160076077	rs2303335	T	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	160082354	rs12692544	C	T	2446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.42;ReadPosRankSum=-1.035;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:58,68:0.54:126
chr2	160082364	rs34344829	A	G	2261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.01;ReadPosRankSum=0.283;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:61,58:0.49:119
chr2	160082384	rs13419975	T	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr2	160084224	rs2042494	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr2	160084263	rs2042495	A	G	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-3.099;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr2	160084534	rs2288111	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=0.598;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	160085506	rs72955954	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr2	160087535	rs3821301	T	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr2	160092703	.	T	TA	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.145;QD=6.29;ReadPosRankSum=-0.211;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr2	160104896	rs73004952	C	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr2	160112881	rs7591849	G	T	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	160114437	rs3213715	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr2	160116281	rs4665052	A	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.016;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr2	160128202	rs11891627	A	C	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:99,106:0.52:205
chr2	160128343	rs11902271	C	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr2	160132089	rs16843852	T	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr2	160132195	.	A	AC	136.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=62.25;MQRankSum=5.581;QD=2.68;ReadPosRankSum=0.357;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr2	160132196	.	AC	CC	652	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=1.0000,0.5000;HP=7;HapScore=4;MGOF=11;MMLQ=24;MQ=62.48;NF=4,6;NR=17,6;PP=652,107;QD=32.0476190476;SC=AAACACTGAAACCCCCCCAAA;SbPval=0.57;Source=Platypus;TC=21;TCF=4;TCR=17;TR=21,12;WE=160132204;WS=160132186;set=Platypus	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	160132196	.	AC	ACC	652	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=1.0000,0.5000;HP=7;HapScore=4;MGOF=11;MMLQ=24;MQ=62.48;NF=4,6;NR=17,6;PP=652,107;QD=32.0476190476;SC=AAACACTGAAACCCCCCCAAA;SbPval=0.57;Source=Platypus;TC=21;TCF=4;TCR=17;TR=21,12;WE=160132204;WS=160132186;set=Platypus	GT:AD:AF:DP	0/1:0,21:1.00:21
chr2	160132196	rs111246034	A	C,AC	1557.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.25;QD=29.96;SOR=0.770;set=HC	GT:AD:AF:DP	1/2:0,16,36:0.31,0.69:52
chr2	160136214	rs13399245	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.80;ReadPosRankSum=-1.132;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	160136337	rs174264	G	A	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr2	160139273	rs147091578	C	G	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr2	160176943	rs174229	A	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	160193370	rs2287634	T	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	160203934	rs965163	A	C,T	1189.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	1/2:0.43,0.57:44
chr2	160231108	rs6742788	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	160239378	rs2302927	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	160241936	rs1469015	A	G	279.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	160243183	rs918351	TA	AT	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	160261729	rs74694096	AC	A	317.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.77;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	160268992	rs201236160	C	T	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:92,99:0.52:191
chr2	160285060	rs57144725	C	T	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	160285575	rs12473781	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	160285660	rs10754963	T	A	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	160295297	rs2302923	C	A	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	160304741	rs12470533	A	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	160335315	rs72947590	T	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	160585740	rs3821299	C	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	160602258	rs59109898	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr2	160604452	rs11555185	C	T	3089.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:182,150:0.45:332
chr2	160604494	rs144441888	A	G	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:162,133:0.45:295
chr2	160604812	rs1427329	C	T	1530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=0.436;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:76,71:0.48:147
chr2	160605268	rs1365803	T	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	160605489	rs10929950	C	T	159.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=1.465;QD=22.83;ReadPosRankSum=0.366;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	160605498	rs4665112	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=1.150;QD=27.94;ReadPosRankSum=0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	160621354	rs5835760	G	GT	562.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.492;QD=17.59;ReadPosRankSum=-0.168;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr2	160634564	rs5835761	ACC	A	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	160634582	rs148276105	TAATATC	T	40.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,2:0.50:4
chr2	160637267	rs2303552	C	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr2	160637324	rs2303551	A	G	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	160639970	rs2114626	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr2	160654524	rs2556106	G	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	160663435	rs12463589	T	C	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:74,55:0.43:129
chr2	160663678	rs7566887	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	160676350	rs17827158	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr2	160676427	rs12692566	C	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	160676445	rs36120198	A	AT,ATT	1140.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=49;set=Intersection	GT:AF:DP	1/2:0.55,0.45:42
chr2	160688351	rs6755783	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	160698700	rs41265133	A	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr2	160708645	rs2162500	C	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-1.485;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr2	160708923	rs36091128	GT	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.35;ReadPosRankSum=0.524;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	160708933	rs72158678	GT	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.35;ReadPosRankSum=1.036;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	160710922	rs2729705	T	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr2	160711045	rs3951216	G	C	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.671;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:53,57:0.52:110
chr2	160711556	rs975490	T	G	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr2	160729134	rs1397705	A	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	160729186	rs10168271	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr2	160734668	rs17828159	T	C	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	160734722	rs2292387	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	160735008	rs2292388	C	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr2	160737495	rs2729712	A	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	160737560	rs2729711	G	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	160737621	rs11675155	C	T	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=3.043;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:48,66:0.58:114
chr2	160738677	rs16822581	G	A	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:103,81:0.44:184
chr2	160742862	rs2271383	G	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr2	160760972	rs1397707	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	160761082	rs6760195	T	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr2	160805993	rs6726923	C	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	160807742	rs952184	A	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	160808075	rs3828323	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr2	160813249	rs3749113	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr2	160833188	rs2715918	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	160840370	rs5835784	AC	A	200.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	160843623	rs6757188	T	C	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-1.327;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:29,35:0.55:64
chr2	160872989	rs10563068	GGT	G	1134.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr2	160873021	rs2715939	G	A	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.230;QD=11.84;ReadPosRankSum=0.451;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:47,64:0.58:111
chr2	160873270	rs2667040	A	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr2	160873294	rs3833577	T	TA	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr2	160876827	rs1511213	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	160889673	rs2203053	G	A	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:45,74:0.62:119
chr2	160898783	rs3792194	A	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr2	160901517	rs4665143	A	G	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:79,73:0.48:152
chr2	160918984	rs925409	T	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr2	160919040	rs11285500	AC	A	901.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	160958349	rs201103445	GAA	G,GA	551.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.03;ReadPosRankSum=1.508;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:2,14,13:0.48,0.45:29
chr2	160994764	rs76007773	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr2	160998792	rs3755547	A	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	161028992	rs1037694	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	161051853	rs2124971	A	G	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr2	161797329	rs1524626	C	T	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	161797513	rs1524625	A	G	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	162059969	rs11884495	A	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:77,72:0.48:149
chr2	162072738	rs1267034	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr2	162091836	rs3754970	T	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr2	162175290	rs1116165	T	C	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	162224193	rs58162668	G	GT	2376.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	162247772	rs1921674	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	162280748	rs890076	G	A	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.588;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	162730312	rs35292746	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	162757676	rs6754546	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	162873188	rs2970931	T	C	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	162876813	rs66494540	G	GT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.489;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr2	162890175	rs1558957	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	162891848	rs6432708	C	T	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	162930286	rs3216773	CGCCAGGGTCCTAGCAGAA	C	3559.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	163030336	rs3764917	T	C	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	163051415	rs1468916	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	163054893	.	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,50:0.51:99
chr2	163075627	rs78722278	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=1.143;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	163124051	rs1990760	C	T	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:94,61:0.39:155
chr2	163128824	rs3747517	T	C	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.017;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=5.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=2.312;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:52,65:0.56:117
chr2	163694878	rs4667768	C	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=6.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=0.303;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr2	163694886	rs4667769	G	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=2.744;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	164466039	rs3833554	AT	A	484.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr2	164468328	rs2231901	G	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	165349459	rs1051160	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr2	165353712	rs8192673	C	T	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:166,117:0.41:283
chr2	165358672	rs4667463	A	G	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	165383686	rs72005853	AATATATATATATATAT	A	69.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	165424837	rs17437781	A	G	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:54,76:0.58:130
chr2	165476253	rs61748245	A	T	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:145,108:0.43:253
chr2	165477836	rs10200142	G	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	165477903	rs62173895	G	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	165544450	rs6738627	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	165548569	rs10490694	G	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	165551201	rs7607980	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr2	165552353	rs34305002	GA	G	128.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	165557318	rs6712203	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	165578581	rs6414069	A	G	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:86,72:0.46:158
chr2	165584407	rs12692743	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	165630100	rs355862	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	165630201	rs355863	C	A	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr2	165630414	rs355864	A	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr2	165630460	rs355865	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr2	165636332	rs355897	T	C	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=0.547;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:45,42:0.48:87
chr2	165657185	rs355915	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	165657255	rs181031465	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	165698715	rs71028447	A	AG	531.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	165809138	rs10544528	ATG	A	405.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	165811554	.	GAA	G	890.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.918;QD=19.79;ReadPosRankSum=-0.028;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:7,38:0.84:45
chr2	165811855	rs139992776	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	165987772	rs62174900	T	G	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,69:0.47:147
chr2	165988022	rs78280506	C	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.30;ReadPosRankSum=0.151;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	165996107	rs1946892	T	A	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,171:0.99:172
chr2	166003479	rs16850131	G	A	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:152,148:0.49:300
chr2	166003573	rs58539679	C	T	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr2	166012203	rs3731760	C	T	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	166153499	rs7593568	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	166164215	rs3214603	CA	C	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	166167166	rs7560348	T	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	166170127	rs2121371	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr2	166172317	rs1838846	A	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr2	166221569	rs3835933	TG	T	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=8.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.817;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	166221582	rs3769951	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=8.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.381;SOR=3.185;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	166221883	rs67174953	GTATC	G	434.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	166224047	rs2304010	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	166229922	rs6432821	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	166234076	rs1864885	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.68;ReadPosRankSum=-0.520;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	166245230	rs2060198	T	A	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:107,114:0.52:221
chr2	166514165	rs12620509	C	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	166514594	rs10803800	A	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	166535615	rs61747278	C	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr2	166535918	rs777346	C	T	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:93,96:0.51:189
chr2	166605366	rs142136047	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr2	166610972	rs67722214	CA	C	66.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	166611006	rs62174818	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr2	166611086	rs41268661	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,43:0.38:113
chr2	166618262	rs1968294	C	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr2	166621354	rs2113840	T	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	166626606	rs4667836	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr2	166740578	rs34701755	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	166756533	.	A	AC	58	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=15;HapScore=4;MGOF=11;MMLQ=23;MQ=58.49;NF=0;NR=6;PP=58;QD=10.1666666667;SC=AAAAAAAAAAAACAACAGTAT;SbPval=1.0;Source=Platypus;TC=16;TCF=1;TCR=15;TR=6;WE=166756541;WS=166756523;set=Platypus	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	166770120	rs10176588	A	G	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.948;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:34,29:0.46:63
chr2	166771663	rs7590559	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	166773971	rs6750044	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	166781242	rs58208220	T	TA	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr2	166788336	rs7592429	T	C	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	166797646	rs1432273	C	T	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:139,133:0.49:272
chr2	166799596	rs13000534	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	166799893	rs10930190	G	A	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.01;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	166802306	rs5836067	ACTGT	A	606.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	166810161	.	G	GCCCGCTCA,GCCCGCTCACCCGCTCA	4190.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=89;set=Intersection	GT:AF:DP	1/2:0.64,0.36:75
chr2	166810373	rs1347041	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	166810433	rs5836068	GT	G	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	166892444	rs34673057	TAAA	T	235.19	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.616;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.70;ReadPosRankSum=0.179;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	166892448	rs114707732	A	T	234.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.900;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.67;ReadPosRankSum=-0.310;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	166892788	rs2298771	C	T	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr2	166893081	rs7601520	G	A	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-1.031;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	166894165	rs67819222	C	CT	291.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	166894230	rs2020318	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr2	166895819	rs10168027	A	G	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	166895913	rs199995171	CTT	C	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=-0.209;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr2	166896143	rs2126152	T	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	166896178	rs490317	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	166897864	rs6432860	A	G	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.553;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:52,36:0.41:88
chr2	166897989	.	GA	G	278.73	.	AC=1;AF=0.500;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=12.67;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	166898017	rs10198801	G	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=-0.567;QD=3.16;ReadPosRankSum=0.536;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	166900606	rs6753355	A	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	166903188	rs538921	A	C	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr2	166903228	rs6432861	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:83,66:0.44:149
chr2	166903445	rs7580482	T	C	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:94,78:0.45:172
chr2	166904346	rs1461193	G	A	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:76,50:0.40:126
chr2	166905375	rs1542484	A	G	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr2	166905480	rs994399	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	166905572	rs1542483	T	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	166909544	rs3812718	C	T	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:98,87:0.47:185
chr2	166909559	rs3812719	C	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:84,56:0.40:140
chr2	166930214	rs566839	T	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	167055393	rs3750904	T	C	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr2	167056428	rs4303728	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	167060449	rs10180721	A	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	167060594	rs202084411	A	G	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,58:0.53:110
chr2	167060980	rs77944059	GAAAC	G	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	167084322	rs143250205	AATT	A	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	167085124	rs10199799	T	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.51;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	167085141	rs58519838	CTT	C	1643.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr2	167090042	rs722204	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.758;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	167094834	rs146201982	T	TA	74.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	167099158	rs6746030	A	G	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	167129098	.	C	G	1916.77	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:113,93:0.45:206
chr2	167129256	rs4369876	C	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr2	167133540	rs12478318	T	G	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:63,78:0.55:141
chr2	167133929	rs71428907	G	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr2	167134578	rs10930215	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr2	167137119	rs6432893	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:53,15:0.22:68
chr2	167137261	rs13007020	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.632;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	167138389	rs34570325	C	CT	502.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr2	167140955	rs7608201	G	A	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr2	167143200	rs76244428	A	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	167144974	rs6747673	A	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	167149693	rs7588632	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr2	167160735	rs74449889	A	G	3574.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:161,166:0.51:327
chr2	167162277	rs4429487	G	A	5847.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	167163043	rs9646771	T	C	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	167163199	rs9646772	A	T	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	167163372	rs4583483	TC	CA	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	167163663	rs4447616	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	167168093	rs6432901	C	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.639;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	167266440	rs16852124	C	T	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr2	167269734	rs41268679	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	167279922	rs6738031	C	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	167313313	rs200713564	AATATATATAT	A,AAT	143	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=4;set=Intersection	GT:AF:DP	1/1:1.00:4
chr2	167328750	rs2293567	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	167334085	rs7565062	G	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	167759948	rs7599152	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr2	167760451	rs5836125	AG	A	763.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	168096254	rs79788542	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	168102774	rs72884678	G	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr2	168986154	rs925846	A	G	1772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=0.883;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:53,83:0.61:136
chr2	169103796	.	C	CGCCGGG	96.37	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.12;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	169487610	rs11347055	GT	G	69.75	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	169487668	rs4667585	A	C	115.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	169674655	rs830026	T	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.05;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	169674663	rs830025	A	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.09;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	169674764	rs830024	C	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	169681278	rs11374385	T	TTTTGTTTG,TTTTGTTTGTTTG	1294.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;QD=43.16;SOR=1.765;set=HC	GT:AD:AF:DP	1/2:0,15,15:0.50,0.50:30
chr2	169690729	rs522893	T	C	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.481;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:56,35:0.38:91
chr2	169707428	rs540652	C	T	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:135,117:0.46:252
chr2	169707552	rs488621	A	G	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:95,111:0.54:206
chr2	169713084	rs11385898	T	TA	693.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr2	169717541	rs2632372	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr2	169721377	rs479661	G	A	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:83,71:0.46:154
chr2	169727879	rs61598834	G	GA	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	169728069	.	GAAA	G	993.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=-0.988;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr2	169763148	rs560887	T	C	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	169764176	rs492594	G	C	7008.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	169764546	rs2232328	C	G	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:119,86:0.42:205
chr2	169780366	rs579275	T	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	169789016	rs497692	T	C	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	169801488	rs853789	A	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	169814347	rs853773	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	169814655	rs853772	G	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	169820618	rs4148796	AT	GC	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	169824739	rs4148789	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.81;MQRankSum=2.670;QD=20.14;ReadPosRankSum=0.389;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	169824743	rs2389613	C	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.81;MQRankSum=2.670;QD=23.48;ReadPosRankSum=0.389;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	169824749	rs28405534	C	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.48;MQRankSum=2.402;QD=21.67;ReadPosRankSum=0.141;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	169826877	rs2193831	C	T	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr2	169828325	rs2241340	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr2	169830051	rs2389605	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	169830155	rs2287623	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:73,67:0.48:140
chr2	169830328	rs2287622	A	G	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=6.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-2.310;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:65,59:0.48:124
chr2	169836182	rs368187290	CAAAAAAAAAAA	C	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=33.87;ReadPosRankSum=-0.842;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	169842809	rs2287618	T	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	169847428	.	G	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-1.072;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:260,55:0.17:315
chr2	169923927	rs16856430	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	169952233	rs1059261	T	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr2	169985418	rs41268683	T	C	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:77,57:0.43:134
chr2	169988946	rs74839579	T	A	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=2.457;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:37,47:0.56:84
chr2	169994021	rs369228824	AAG	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=3.030;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr2	169997051	rs990626	G	A	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	170002500	rs41265945	C	T	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr2	170003432	rs4667591	T	G	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:114,83:0.42:197
chr2	170010985	rs2075252	T	C	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.446;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:63,45:0.42:108
chr2	170027039	rs115478315	A	G	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:203,187:0.48:390
chr2	170032989	rs2229265	C	T	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:118,135:0.53:253
chr2	170050472	rs2075248	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	170053505	rs2228171	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr2	170053580	rs2302696	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-0.606;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr2	170055255	rs16823023	T	C	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:103,102:0.50:205
chr2	170058497	rs16856600	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	170059190	rs2239599	T	C	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.000;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:42,49:0.54:91
chr2	170115521	rs201785482	A	G	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:147,129:0.47:276
chr2	170129528	rs830994	G	A	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	170129636	rs830995	A	G	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	170134191	rs831003	G	C	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	170139346	rs831010	C	T	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	170139639	rs831011	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	170218816	rs1559013	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	170218847	rs1559014	C	G	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	170336024	rs1879466	G	C	5688.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	170339003	rs2353187	C	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=-2.074;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	170353996	rs74715514	C	G	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	170360765	rs72885849	G	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr2	170367099	rs28763868	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:96,73:0.43:169
chr2	170371060	rs143361344	ATCTC	A	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr2	170387483	rs74815242	G	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr2	170393925	rs2683423	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	170394487	rs2290005	T	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.526;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr2	170396718	rs75958526	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	170403030	rs2253680	T	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr2	170411485	rs2592823	C	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-2.027;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	170411693	rs2683455	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.72;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	170411693	.	TAATTC	CAATTC,CAATTG	320	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=22;MQ=60.0;NF=27,11;NR=21,11;PP=320,285;QD=7.39106692807;SC=GCAGAAAAGTTAATTCTTGAG;SbPval=0.56;Source=Platypus;TC=48;TCF=27;TCR=21;TR=48,22;WE=170411706;WS=170411683;set=Platypus	GT:AF:DP	0/1:1.00:48
chr2	170411698	rs12618227	C	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.763;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:29,26:0.47:55
chr2	170413601	rs2592824	A	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr2	170413897	rs56157235	G	GA	322.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	170417031	rs35933910	T	C	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=-0.691;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr2	170417349	.	CTTTT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	170425523	rs2683446	A	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=27.36;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	170463551	rs2592813	T	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.538;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.259;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	170465107	rs139903646	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr2	170471270	rs115697204	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	170488454	rs3754921	A	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-2.053;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:41,46:0.53:87
chr2	170492567	rs2290007	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.60;ReadPosRankSum=0.366;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	170492584	rs2290008	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	170493103	rs1050354	T	A	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-0.614;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr2	170505684	rs3213946	G	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr2	170510651	rs61741435	C	T	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-1.807;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:46,49:0.52:95
chr2	170531572	rs11682248	T	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	170531614	rs11688600	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	170550839	rs3820952	A	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,56:0.45:124
chr2	170550956	rs1446901	A	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr2	170558231	rs11685651	T	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr2	170558293	.	AAAAAG	A	121	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=11;HapScore=2;MGOF=10;MMLQ=29;MQ=60.0;NF=0;NR=4;PP=121;QD=31.75;SC=CTTAAAAAAAAAAAAGAGAGA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=4;WE=170558305;WS=170558283;set=Platypus	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	170605981	rs4667607	C	T	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	170606423	rs72113382	TTATA	TTATATA,T	1604.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=62;set=Intersection	GT:AF:DP	1/2:0.22,0.73:49
chr2	170606442	rs61101061	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr2	170606450	rs79825047	C	T	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.158;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.24;ReadPosRankSum=0.175;SOR=0.151;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr2	170606476	.	CAT	C	618	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=72;MMLQ=22;MQ=60.0;NF=2;NR=26;PP=618;QD=23.0357142857;SC=TATATGTATACATATATATGT;SbPval=0.57;Source=Platypus;TC=29;TCF=2;TCR=27;TR=28;WE=170606485;WS=170606466;set=Platypus	GT:AD:AF:DP	0/1:1,28:0.97:29
chr2	170606478	.	T	TATATGTGTATATATACGCATGTATGTATAC	982.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=4.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.71;ReadPosRankSum=-1.292;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr2	170606496	rs144201291	C	CGCAT	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr2	170606553	rs11444477	A	AC	128.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	170606570	rs10186045	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	170606588	.	A	G	20	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=2;MGOF=163;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=20;QD=18.2570708491;SC=ATATATACGTATGTATGTATA;SbPval=1.0;Source=Platypus;TC=10;TCF=5;TCR=5;TR=3;WE=170606596;WS=170606578;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	170606609	.	TATAC	T	208	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=4;MGOF=124;MMLQ=19;MQ=60.0;NF=2;NR=3;PP=208;QD=48.6;SC=CATATATGTGTATACATATAT;SbPval=0.61;Source=Platypus;TC=8;TCF=3;TCR=5;TR=5;WE=170606626;WS=170606599;set=Platypus	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	170606618	.	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.97;ReadPosRankSum=1.981;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	170606658	rs1469355	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	170606660	rs199777191	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.621;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	170606724	rs10164599	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	170606865	.	T	C	78.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	170632807	rs10930375	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	170632896	rs10930376	T	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=1.518;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:28,41:0.59:69
chr2	170632960	rs150673586	C	CA	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.821;QD=2.79;ReadPosRankSum=0.536;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:78,35:0.31:113
chr2	170632969	rs55969365	C	A	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.981;QD=7.76;ReadPosRankSum=-0.098;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:88,43:0.33:131
chr2	170633023	rs11422611	T	TA	1217.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:79,44:0.36:123
chr2	170633067	rs6745191	G	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chr2	170633103	rs11325477	GA	G	3321.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	170662416	rs6721561	G	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,68:0.48:142
chr2	170664983	rs41268693	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr2	170665418	rs73016461	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	170665435	rs73016462	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr2	170667117	rs73972626	A	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	170667911	rs60539542	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	170668106	rs2246149	G	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	170668813	rs3731674	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr2	170675912	rs73016479	A	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	170676227	rs1541776	T	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	170677855	rs34089373	G	GT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=0.528;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	170677918	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.27;ReadPosRankSum=0.706;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	170678476	rs35417312	G	A	4501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.472;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-1.838;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:201,220:0.52:421
chr2	170684224	rs2303555	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	170762487	rs10171268	C	T	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	170782037	rs1461958	C	T	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	170782338	rs13016918	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	170784049	rs898851	G	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	170850738	rs1461959	T	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	170870595	rs10497357	T	C	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	170871976	rs13028230	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	170917983	rs35032863	CT	C	2064.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:10,116:0.92:126
chr2	171055942	rs35521414	T	A	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	171056569	rs6756347	T	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	171070850	rs13423313	G	T	2818.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.662;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=6.651;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.10;ReadPosRankSum=1.071;SOR=0.406;set=HC	GT:AD:AF:DP	1/1:2,120:0.98:122
chr2	171070912	rs13385825	T	C	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	171071369	rs4667626	C	T	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	171073887	rs2161916	G	A	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	171092445	rs1035625	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	171092794	.	TG	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.10;ReadPosRankSum=2.189;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	171192084	rs12466203	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr2	171256912	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.227;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	171259308	rs17579757	T	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr2	171260708	rs10930425	C	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	171260787	rs6736609	G	A	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	171260820	rs6751520	T	C	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	171261021	rs6751781	T	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	171264091	rs138990294	T	TGCTCTGGATATGAAA,TGCTCTGGATATGAAAGCTCTGGATATGAAA	2356.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/2:0.39,0.61:33
chr2	171264179	rs72876321	C	T	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:94,103:0.52:197
chr2	171300575	rs17426211	C	A	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.374;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:72,85:0.54:157
chr2	171300648	rs4667639	T	A	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	171319997	rs12477518	A	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:60,55:0.48:115
chr2	171323328	rs4359605	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	171355198	rs6761297	A	G	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	171355329	rs6733198	G	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	171356274	rs10185178	G	A	1996.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=-0.628;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,78:0.97:80
chr2	171356423	rs9752383	T	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	171358211	rs7593940	G	A	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	171358474	rs7608168	T	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	171508490	rs10718459	CA	C	657.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	171570151	rs72885464	C	T	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:92,86:0.48:178
chr2	171570488	rs7563812	C	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr2	171573185	rs1134626	G	T	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:125,114:0.48:239
chr2	171627676	rs1861462	T	G	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	171632385	rs10626619	C	CTT	1101.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	171633554	rs17694562	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	171634104	rs55923006	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr2	171634347	rs11334749	TA	T	1894.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr2	171634395	rs1065651	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr2	171654663	rs2287111	A	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr2	171678379	rs2241165	C	T	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	171678625	rs769404	T	C	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:109,133:0.55:242
chr2	171705157	rs35403424	AT	A	2288.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr2	171786169	rs2676158	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	171786239	rs3770442	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	171793357	rs35123411	C	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.663;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	171818289	rs2557804	G	A	9214.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr2	171822466	rs4668356	C	T	18121.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr2	171822576	rs3770436	C	T	5768.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:192,260:0.58:452
chr2	171850329	rs3731993	T	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.943;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	171851048	.	C	CAA	535.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.863;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.785;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=1.300;QD=14.48;ReadPosRankSum=0.720;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	171906469	rs3217296	GA	G	1163.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr2	171910313	rs11553951	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr2	171913207	rs200719254	CAA	C	209.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.22;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	171916664	rs2676130	A	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	172016717	rs3821085	G	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-0.000;QD=34.71;ReadPosRankSum=-1.691;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr2	172016727	rs377552379	CG	C	372.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=0.000;QD=28.67;ReadPosRankSum=0.339;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	172016729	.	G	A	381.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=0.000;QD=29.37;ReadPosRankSum=0.254;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	172016756	rs113416007	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.902;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	172180771	rs10205459	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	172188368	rs13023973	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr2	172216969	rs3731986	T	C	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=2.160;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chr2	172378818	rs868106	A	G	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	172378889	rs2356782	C	G	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	172378893	rs3731976	G	A	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	172379686	rs960750	G	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	172379781	rs960749	G	A	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	172379936	rs960748	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	172398311	rs7586144	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	172411273	rs10455	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr2	172563922	rs312925	G	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr2	172564021	rs312924	A	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	172569134	rs5836347	AT	A	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.107;SOR=0.108;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chr2	172582109	rs72448646	T	TTTG	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.51;MQRankSum=0.842;QD=13.96;ReadPosRankSum=-1.834;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	172582281	rs139032813	A	ATTAC	1299.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;MQ=60.35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	172582344	rs139881666	AAC	A	482.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	172644229	rs2292813	T	C	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	172650382	rs6745143	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr2	172709215	rs3770444	G	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	172712480	rs2056202	T	C	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.84;SOR=1.701;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	172725301	rs1878583	A	G	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	172864845	rs6730085	C	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr2	172865009	rs62183782	T	A	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=1.691;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:84,87:0.51:171
chr2	172926211	rs62183852	T	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr2	172942448	rs3796058	A	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	172952270	rs74659040	A	G	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:100,80:0.44:180
chr2	172966250	rs2228184	T	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	172967302	rs743605	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	173429033	rs4972842	T	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	173429496	rs10531054	TTAGG	T	208.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	173435578	.	C	CT	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.530;QD=2.13;ReadPosRankSum=-0.593;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:110,38:0.26:148
chr2	173435658	rs141130222	CAG	C	639.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	173600603	rs76443145	C	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	173600783	rs34574292	C	CG	3542.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	173609170	.	A	G	4575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.83;ReadPosRankSum=-0.328;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:123,120:0.49:243
chr2	173609173	rs13005651	T	A	4587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.04;ReadPosRankSum=-0.394;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:122,119:0.49:241
chr2	173659913	rs7585729	T	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	173686663	rs2258180	G	T	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	173686798	rs2258175	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	173793024	.	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=5.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.408;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr2	173848200	rs59582070	C	CT	1700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.785;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=11.57;ReadPosRankSum=2.035;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:41,106:0.72:147
chr2	173861335	.	T	C	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.556;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:115,36:0.24:151
chr2	173861456	rs5010643	G	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	173865976	rs3214814	G	GT	5483.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.81;ReadPosRankSum=-0.267;SOR=0.405;set=HC	GT:AD:AF:DP	1/1:1,220:1.00:221
chr2	173866203	rs2028934	C	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	174062736	rs146924556	A	G	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.408;SOR=1.228;set=HC	GT:AD:AF:DP	0/1:70,74:0.51:144
chr2	174068513	rs11899707	G	C	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	174074353	rs2289398	T	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	174074407	rs2289396	A	G	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.928;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	174086285	rs74417392	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr2	174094345	rs10193498	A	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr2	174094500	rs16861404	G	A	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.760;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:32,30:0.48:62
chr2	174123399	rs820008	A	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	174128513	rs3769148	C	T	1871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=-0.244;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:76,90:0.54:166
chr2	174219773	rs28362634	G	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr2	174227876	rs767074	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr2	174228257	rs2278638	C	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr2	174228418	rs4972555	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	174230153	rs2288993	C	G	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	174230983	rs35959156	G	GT	438.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	174231184	rs62175733	C	T	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr2	174232076	rs3816061	G	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr2	174232452	rs139829082	A	AT	492.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr2	174819713	rs35063529	A	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr2	174829304	.	T	G	24	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=12;HapScore=2;MGOF=19;MMLQ=23;MQ=57.31;NF=2;NR=2;PP=24;QD=14.6928031368;SC=CGCGGGGGGGTGGGGGTGGGG;SbPval=0.51;Source=Platypus;TC=23;TCF=14;TCR=9;TR=4;WE=174829312;WS=174829294;set=Platypus	GT:AD:AF:DP	1/0:19,4:0.17:23
chr2	175199869	rs56000618	G	T	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:131,167:0.56:298
chr2	175200014	rs34372833	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr2	175200903	rs35548534	G	C	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:162,121:0.43:283
chr2	175223296	rs4972650	T	A	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	175244756	rs2358666	T	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	175246386	.	G	GA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=3.717;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.883;QD=3.30;ReadPosRankSum=0.950;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	175263063	rs10497410	G	A	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-2.378;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:41,32:0.44:73
chr2	175318396	rs12614979	G	A	118.31	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	175318411	rs201863632	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=11.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=3.643;SOR=3.521;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr2	175326258	rs72910819	G	T	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,86:0.50:171
chr2	175335076	rs2358637	G	T	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	175335365	rs56101059	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr2	175426750	rs6732100	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr2	175431707	rs2163236	C	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	175436234	rs1044335	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr2	175436940	rs4972450	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	175439512	rs1367218	T	C	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	175439536	rs12624277	G	A	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:110,73:0.40:183
chr2	175439681	rs3049897	T	TA,TAA	1118.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.954;SOR=0.779;set=HC	GT:AD:AF:DP	1/2:13,40,23:0.53,0.30:76
chr2	175446270	rs13401162	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr2	175613059	rs3816448	A	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	175613169	rs2305414	A	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr2	175613600	rs2646159	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	175614908	rs139930312	CAA	C	1475.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.44;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:5,53:0.91:58
chr2	175618189	.	C	T	608.77	.	AC=1;AF=0.500;AN=2;DP=155;set=Intersection	GT:AD:AF:DP	0/1:112,42:0.27:154
chr2	175622178	rs11327107	TG	T	675.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	175622788	rs2646164	G	A	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	175622907	rs2600687	T	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	175624107	rs34695580	GA	G	619.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr2	175629021	rs7560774	C	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:96,65:0.40:161
chr2	175666656	rs2646153	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	175677022	rs12613075	C	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr2	175689342	rs149952097	C	CTATA	384.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	175711942	rs14228	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr2	175982957	rs1153675	A	G	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.418;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:50,49:0.49:99
chr2	176044008	rs12615406	G	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr2	176046007	rs73039765	C	T	3435.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:210,168:0.44:378
chr2	176866967	rs935492	C	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:77,59:0.43:136
chr2	176867131	rs747051	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	176947268	rs72919090	G	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr2	176957822	rs2518053	G	A	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:84,110:0.57:194
chr2	177465595	rs17343601	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	178085137	rs9068	G	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	178098087	rs139080704	CA	C	2722.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:86,95:0.52:181
chr2	178129390	rs143406266	TGGC	T	1056.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr2	178301428	rs3754989	C	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	178326838	rs1979059	C	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.77;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	178326847	rs1979058	G	A	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	178358072	rs1348849	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	178362572	rs12468046	G	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	178378452	rs2364854	T	A	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	178417142	rs11694988	C	T	6358.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	178417225	rs11695035	C	T	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	178481818	rs10497497	G	T	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	178482094	rs28630685	C	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.91;SOR=4.863;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	178482780	rs61997202	C	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:96,74:0.44:170
chr2	178494173	rs3830637	G	GGGA	1464.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	178528703	rs13025391	C	T	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	178528728	rs35775900	C	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr2	178528789	rs13025904	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	178534110	rs2222711	G	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	178534324	rs6433687	A	G	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	178540293	rs3770016	A	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	178545713	rs4538242	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	178561947	rs2886424	G	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	178565815	rs10201180	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	178681716	rs1438059	G	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	178764364	rs3037901	A	AAT,AATAT	206.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=13;set=Intersection	GT:AF:DP	0/1:0.89:9
chr2	178769992	rs2695096	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	178936373	rs1435573	T	G	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	178936614	rs6433711	C	T	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	178977620	rs2276622	C	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr2	178986130	rs200909090	TACAC	T,TAC	626.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=62.67;SOR=4.804;set=HC	GT:AD:AF:DP	1/2:0,5,5:0.50,0.50:10
chr2	178986134	.	C	T	86.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.68;ReadPosRankSum=0.712;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	178986136	rs200763421	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.18;ReadPosRankSum=-1.068;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	179203797	rs1434087	G	A	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr2	179226290	rs1560871	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	179236831	rs6433724	A	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	179238507	rs7595571	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	179238841	rs10190530	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	179258923	rs919177	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	179260382	rs2304340	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr2	179260653	rs34253857	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=2.113;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	179296745	.	C	T	403.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	179312440	rs150523431	G	GTAC	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	179324025	rs7600176	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr2	179330468	rs11336824	TA	T	101.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.77;ReadPosRankSum=-1.111;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	179341953	rs6704545	G	A	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:74,88:0.54:162
chr2	179358665	rs2303536	A	G	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr2	179363807	rs3214536	A	AT	295.25	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr2	179366093	rs2303537	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	179367086	rs967507	A	G	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-0.504;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr2	179368380	rs16866352	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.794;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-0.671;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr2	179392080	rs16866373	A	T	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,57:0.52:110
chr2	179395958	rs3813250	T	C	1826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.303;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:117,94:0.45:211
chr2	179396354	rs3829748	G	A	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:70,65:0.48:135
chr2	179397561	rs3829747	C	T	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:75,94:0.56:169
chr2	179398823	rs2857265	G	A	3666.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:119,163:0.58:282
chr2	179403593	rs2303539	G	A	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:108,99:0.48:207
chr2	179404786	rs2288325	A	T	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:119,117:0.50:236
chr2	179405885	rs3731751	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	179406003	rs3731750	C	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr2	179406191	rs3731749	C	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:37,70:0.65:107
chr2	179410221	.	G	T	3198.77	.	AC=1;AF=0.500;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	0/1:118,142:0.55:260
chr2	179411665	rs2288327	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr2	179413110	rs3731748	G	A	3491.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:181,165:0.48:346
chr2	179414633	rs890578	C	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr2	179421470	rs16866397	T	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr2	179421694	rs9808377	A	G	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:128,116:0.48:244
chr2	179421791	rs183013408	C	T	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:129,100:0.44:229
chr2	179422991	rs189638177	G	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr2	179427186	rs2366751	A	G	3840.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:247,189:0.43:436
chr2	179427536	rs3829746	T	C	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:88,87:0.50:175
chr2	179430997	rs3731746	G	A	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:112,107:0.49:219
chr2	179432185	rs12463674	A	G	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:142,134:0.49:276
chr2	179436020	rs744426	G	A	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:138,125:0.48:263
chr2	179440029	rs12464787	G	A	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:115,108:0.48:223
chr2	179443217	rs3769864	T	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	179444137	rs2288571	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr2	179444768	rs4145333	C	G	8536.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	179444939	rs2303838	C	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:72,55:0.43:127
chr2	179447848	rs4894029	T	C	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:133,115:0.46:248
chr2	179448911	rs16866400	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr2	179451420	rs2042996	G	A	1623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-0.861;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:60,78:0.57:138
chr2	179454394	rs1560221	A	G	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:149,117:0.44:266
chr2	179455207	rs2163009	T	C	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:127,162:0.56:289
chr2	179457147	rs16866406	G	A	2949.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:156,137:0.47:293
chr2	179458591	rs2288569	C	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:124,84:0.40:208
chr2	179462494	rs35833641	A	G	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:158,108:0.41:266
chr2	179464527	rs1001238	T	C	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:63,79:0.56:142
chr2	179477332	rs34928195	AT	A	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.972;QD=7.48;ReadPosRankSum=0.636;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	179514433	rs2562845	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr2	179539903	rs2472751	C	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	179543217	rs35112591	C	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr2	179544685	.	C	CTCT	5966.73	.	AC=1;AF=0.500;AN=2;DP=335;set=Intersection	GT:AD:AF:DP	0/1:145,156:0.52:301
chr2	179545859	rs36051007	C	T	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr2	179547860	rs2303828	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	179548695	.	ATT	A	931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=5.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.27;ReadPosRankSum=2.677;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:18,43:0.70:61
chr2	179548954	rs78092378	T	TCAA	1262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=3.053;QD=12.63;ReadPosRankSum=-0.029;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:64,36:0.36:100
chr2	179553730	.	ATTT	A	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.132;QD=9.69;ReadPosRankSum=0.164;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	179554305	rs2244492	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr2	179558282	rs2255167	T	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	179558366	rs2042995	T	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr2	179566146	rs2251987	T	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	179576596	rs2742331	A	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr2	179578108	rs71393436	T	TACAAA	105.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	179578730	rs2562839	G	A	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:148,121:0.45:269
chr2	179579093	rs12693164	T	C	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:94,109:0.54:203
chr2	179579212	rs2562838	T	C	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:107,126:0.54:233
chr2	179579822	rs2562836	T	A	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:102,105:0.51:207
chr2	179580583	rs2562834	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	179582162	rs62178977	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:64,67:0.51:131
chr2	179582327	rs13390491	C	T	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr2	179582537	rs2627043	G	T	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:152,140:0.48:292
chr2	179582605	rs6750145	A	G	3434.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:152,156:0.51:308
chr2	179583398	rs62178978	T	C	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:81,89:0.52:170
chr2	179583496	rs16866465	T	G	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:110,108:0.50:218
chr2	179585266	rs2562831	C	T	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	179585393	rs2562830	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr2	179587130	rs12693166	C	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:109,98:0.47:207
chr2	179587687	rs2742327	T	C	3837.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:152,168:0.53:320
chr2	179595117	rs17076	C	G	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:81,78:0.49:159
chr2	179600563	rs2742348	G	A	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	179605180	rs746578	C	T	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr2	179614952	rs10803917	A	G	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	179615887	rs922984	T	C	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	179615931	rs922985	C	G	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	179615994	rs922986	T	C	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	179616413	.	C	G	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.504;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:159,53:0.25:212
chr2	179616770	.	GAA	G	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.800;QD=15.94;ReadPosRankSum=-0.415;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	179618019	rs3754953	T	A	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	179620951	rs7585334	C	T	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	179621477	rs6433728	C	T	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	179623758	rs2291310	C	T	6466.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	179623939	rs6705594	T	C	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	179629363	rs4894043	T	C	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	179629461	rs2291311	C	T	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	179629472	.	C	T	471.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr2	179631104	.	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr2	179632710	rs2291313	T	C	3139.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:176,139:0.44:315
chr2	179633298	rs4471922	G	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	179634376	rs72125115	GTA	G	424.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr2	179634389	rs66507452	TA	T	714.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.85;MQRankSum=-0.558;QD=11.34;ReadPosRankSum=1.574;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr2	179634391	rs66897330	TA	T	714.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=-0.593;QD=11.17;ReadPosRankSum=2.114;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:30,34:0.53:64
chr2	179635882	rs4894047	C	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	179639297	rs3816781	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	179642425	rs719201	G	A	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	179643886	rs2291302	A	G	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	179643934	rs2291301	A	G	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	179644035	rs1552280	G	A	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	179644855	rs10497520	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr2	179650701	rs6715406	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,72:0.55:131
chr2	179650954	rs6715901	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	179659912	rs16866538	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr2	179667090	rs3816849	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	179682415	rs59415652	G	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:49,41:0.46:90
chr2	179702268	rs1032283	A	G	5654.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	179702577	rs3045731	A	AGG	1162.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	179702610	rs2078403	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	179732980	rs10165177	A	G	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	179732997	rs10165253	A	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	179737144	rs12693170	C	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	179753245	rs7573293	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr2	179753549	rs1873164	G	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	179783696	rs12467323	C	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	179809500	rs9677932	C	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	179825838	rs11303440	TG	T	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;MQ=60.63;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	179825873	.	G	A	612.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr2	179826241	rs6725028	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	179839833	rs10930846	A	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr2	179988395	rs5836671	T	TA	722.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.571;QD=17.21;ReadPosRankSum=-2.343;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:4,38:0.90:42
chr2	180039068	rs13013868	C	T	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	180047746	rs1446673	G	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	180047908	rs6757681	T	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	180308335	rs10171283	C	G	32.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.93;ReadPosRankSum=0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr2	180383498	rs4567894	C	A	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	180725481	rs259816	T	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	180725757	.	G	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.551;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	180810180	rs6433817	C	T	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	180810264	rs6433818	A	T	8227.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	180815528	rs2304858	A	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	180823590	rs10497553	C	T	282.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	180835589	rs4894140	A	G	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	180835792	rs3768837	T	A	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	180837722	rs6433820	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	180837806	rs6433821	T	A	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	180843126	rs2367990	C	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	180846743	rs3738943	G	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	182340444	rs17224277	G	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr2	182350447	rs155102	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	182350743	rs155103	A	G	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:41,70:0.63:111
chr2	182359613	rs165419	G	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	182374534	rs1143674	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr2	182374660	rs2305582	A	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	182376546	rs1466109	T	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	182387133	rs7602504	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	182390107	rs2305580	A	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	182395345	rs1143676	G	A	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	182396568	rs56005177	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr2	182399097	rs7562325	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr2	182399486	rs7601843	G	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.864;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr2	182399497	rs11418738	A	ATT	1010.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.85;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	182399514	rs142045243	T	TTGAG	646.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	182399638	rs2124443	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	182402790	rs6747500	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	182403792	rs57234957	A	AT	7063.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	182403851	rs10180793	G	A	8165.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr2	182412633	rs139036113	G	GACACACACACACAC,GACACACACACAC	5409.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=170;set=Intersection	GT:AF:DP	1/1:1.00:130
chr2	182412710	rs56263562	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr2	182412723	rs34890422	C	CGT	1168.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	182413238	rs72883670	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	182413259	rs12997453	A	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	182413602	rs13003064	A	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr2	182413736	rs55741565	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	182414358	rs12623687	T	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr2	182414522	rs12623737	T	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr2	182438716	rs10427195	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr2	182468803	rs61750041	T	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr2	182521578	rs1473295	G	A	2824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=3.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.909;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:144,157:0.52:301
chr2	182543455	rs1801262	T	C	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	182767178	rs34087767	C	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr2	182794351	.	G	C	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.317;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:110,35:0.24:145
chr2	182794534	rs1051085	G	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	182928555	rs1196161	G	C	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	182981846	rs1882211	G	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	182981849	.	CTCTTT	C	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-1.305;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	183033020	rs78156757	GAA	G	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-1.685;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr2	183066377	rs56413404	C	CAAAAA	2362.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.92;ReadPosRankSum=1.309;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:1,63:0.98:64
chr2	183070619	rs1344773	A	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	183070911	rs55747252	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	183584755	rs6729801	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-2.190;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr2	183593451	rs3832045	AT	A	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr2	183593697	rs288280	C	T	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:90,54:0.38:144
chr2	183597063	rs288282	T	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.439;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	183597318	rs825660	A	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:52,60:0.54:112
chr2	183616592	rs3098359	C	T	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	183616748	rs3115425	G	C	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:72,48:0.40:120
chr2	183622319	rs141152570	AATAAT	A	122.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	183622547	rs288334	T	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	183627504	rs192618	A	G	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:63,77:0.55:140
chr2	183627619	rs190830	C	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	183702670	rs111740973	G	T	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=1.430;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr2	183793383	rs9333279	T	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	183793398	rs9333280	A	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr2	183794728	rs13009031	C	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr2	183799558	rs9288088	G	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=0.747;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:23,42:0.65:65
chr2	183817724	rs35971883	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-2.233;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr2	183817957	rs66829551	T	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr2	183827018	rs2271671	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr2	183843744	rs55739115	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.537;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	183848114	rs1400130	T	C	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.144;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:55,61:0.53:116
chr2	183851058	rs10185562	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	183860298	rs10497617	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	183960143	rs57818913	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=5.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.129;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr2	183960522	rs13399265	T	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	183988984	rs2705719	C	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	183995742	rs925803	A	C	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.721;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	183998237	rs1980160	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.032;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.968;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr2	184022015	rs3791249	G	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	185463815	rs147358574	C	CCT	2593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=3.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=1.365;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:88,87:0.50:175
chr2	185798504	rs4667000	A	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr2	185800905	rs12476147	A	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:130,74:0.36:204
chr2	185801747	rs4667001	G	A	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.17;ReadPosRankSum=-0.515;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:36,37:0.51:73
chr2	185801755	rs4667002	A	G	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.44;ReadPosRankSum=-1.848;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:36,37:0.51:73
chr2	185802211	rs5836928	C	CACA	930.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr2	185802243	rs1366842	C	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr2	185802363	rs12477430	A	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr2	186610344	rs11884004	T	G	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr2	186610388	rs17813736	G	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	186611566	rs6758484	C	A	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	186611938	rs12618129	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	186625670	.	TAA	T,TA	421.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.764;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=0.433;SOR=0.250;set=HC	GT:AD:AF:DP	1/2:2,9,15:0.35,0.58:26
chr2	186625770	rs7562137	A	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	186627943	rs17228441	T	C	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	186629349	rs1986166	G	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	186647270	rs140906899	T	TA	252.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	186654592	rs992822	A	G	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	186655726	rs10931199	G	A	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	186656657	rs10173807	C	T	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	186656840	rs17815052	T	C	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:68,38:0.36:106
chr2	186656956	rs17229201	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	186657089	rs17229222	C	A	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	186658056	rs60029104	G	A	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	186658438	rs10490391	C	T	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	186658565	rs10490392	G	T	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	186659359	rs2161036	G	T	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	186661673	rs55938253	A	G	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	186664473	rs11686997	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	186664963	rs10931200	C	A	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	186665432	rs36004074	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	186665824	rs11695215	A	G	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	186667121	rs7605884	T	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	186670104	rs7576532	A	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	186670780	rs16827154	T	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	186670979	rs4666689	T	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	186671357	rs17826534	G	A	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	186671912	rs1862066	G	A	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	186672527	rs72900086	T	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr2	186678241	rs34138386	A	AT	213.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	186678887	rs2161035	T	C	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	186680041	rs2287606	G	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	186696759	rs2302913	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	186697876	rs1468999	A	G	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	187487269	rs6741369	G	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	187498107	rs9333289	T	C	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.487;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=1.492;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:45,35:0.44:80
chr2	187501682	rs56136540	G	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr2	187505793	rs56074166	T	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	187519338	rs9333290	G	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	187521260	rs3738919	C	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	187528635	rs3816386	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	187532417	rs2230616	G	A	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	187533368	rs11685758	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr2	187540732	rs3213964	G	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	187541377	rs35251833	G	A	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	187541810	rs2887831	T	C	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr2	187543374	rs1839123	C	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr2	187559029	.	A	ACAG,ACAGCAG	7996.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=261;set=Intersection	GT:AF:DP	1/2:0.45,0.50:211
chr2	187559222	rs6705757	T	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr2	187611748	rs2247924	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	187626338	rs13026081	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr2	187698037	rs7609183	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	187698751	rs7559533	G	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr2	187702339	rs72348328	GTA	G	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.07;ReadPosRankSum=-0.792;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	188216783	rs858744	C	T	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr2	188216807	rs858745	T	C	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	188227921	rs698582	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	188243633	rs3771084	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.431;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	188245640	rs1511877	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	188250301	rs698577	T	A	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	188296203	.	T	C	916.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr2	188332692	rs8176592	A	G	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:106,90:0.46:196
chr2	188343497	rs7586970	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	188348696	rs144825443	TAAAC	T	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	189448896	rs2048138	A	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	189448931	rs72270766	TATTTAGCATTACA	T	2075.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr2	189449248	rs13019484	A	G	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=0.478;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr2	189849773	rs3106796	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	189855674	rs2203601	T	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	189861031	rs141685938	T	TAC	174.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.157;QD=21.78;ReadPosRankSum=-1.534;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr2	189862203	rs3134654	C	T	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	189866199	rs2271682	T	A	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	189867205	rs3106801	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	189871887	.	TGATA	T	80	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=1;HapScore=2;MGOF=19;MMLQ=27;MQ=65.19;NF=1;NR=1;PP=80;QD=42.0;SC=TATAGATAGATGATAGATAGA;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=189871898;WS=189871877;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	189875421	rs1516446	T	G	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	189898847	rs78905646	G	A	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:94,78:0.45:172
chr2	189899541	rs4666770	T	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	189899572	rs7420715	T	C	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	189901251	rs142224900	TA	T	54.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	189901295	rs12693526	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	189903961	rs55749146	C	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr2	189906194	rs59631824	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr2	189907815	rs59397955	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-1.225;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	189907937	rs6434312	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	189917092	rs72902380	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	189917433	rs73978809	G	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr2	189918337	rs6750027	T	C	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	189918622	rs116298748	G	A	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.912;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:71,68:0.49:139
chr2	189918758	rs73978810	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr2	189918787	rs6738371	C	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr2	189918979	rs114959831	G	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.989;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	189921776	rs73978812	T	C	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:132,142:0.52:274
chr2	189923104	rs7556733	A	G	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	189923434	rs12989558	A	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr2	189923630	rs5837121	AT	A	2743.73	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:27,161:0.86:188
chr2	189925548	rs6414122	T	A	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	189926219	rs111688859	CT	C	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.705;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:21,31:0.60:52
chr2	189926228	.	T	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.945;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:24,41:0.63:65
chr2	189927506	rs7424947	C	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	189931144	rs35852101	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr2	189932831	rs2229495	T	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	189933686	rs72904419	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=0.087;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	189936687	rs6434317	T	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-1.149;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr2	189943121	rs5837122	GA	G	401.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=-0.785;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr2	189943304	rs73978832	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:66,73:0.53:139
chr2	189945538	rs55929725	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	189945654	rs57206096	T	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr2	189948651	rs55963648	G	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr2	189948696	rs56310996	G	A	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=1.480;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:44,32:0.42:76
chr2	189949759	rs58532741	C	T	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr2	189949786	rs61311233	TG	AT	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;JOINED;set=Intersection	GT:AD:AF:DP	0/1:58,60:0.51:118
chr2	189950069	rs60860012	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr2	189950556	rs60355473	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr2	189953508	rs58106884	C	T	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr2	189953551	rs58243388	G	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=0.036;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chr2	189962199	rs72906358	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	189964747	rs55977069	G	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	189964891	rs56380683	A	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.960;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:24,30:0.56:54
chr2	189964970	rs55765720	T	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	189965017	rs55905390	G	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.37;ReadPosRankSum=-0.415;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	189968808	rs147860045	TA	T	257.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr2	189974958	rs4128539	G	T	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	189997577	.	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-1.981;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr2	189997581	.	A	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=-0.623;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr2	189997583	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=-0.623;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr2	189997590	.	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=-2.287;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr2	189997838	rs62182417	G	A	176.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	189997840	.	CTTT	C	167.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	190313268	rs77312241	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr2	190313396	rs6738193	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	190313441	rs79567107	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr2	190313570	rs28760459	T	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr2	190313613	rs28509172	G	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=1.654;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr2	190314052	rs10196323	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr2	190314085	rs28627748	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr2	190314186	rs10196675	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	190315720	rs10202780	G	C	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=-0.295;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr2	190315723	rs10178969	A	C	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=-1.215;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:33,36:0.52:69
chr2	190316625	rs13389403	T	C	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=1.842;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:30,41:0.58:71
chr2	190319954	rs112007236	A	C	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=0.721;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	190319963	rs377155083	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=0.777;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr2	190319966	rs5837143	C	CA	985.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.07;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	190319990	rs1224958	A	G	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	190320083	rs6737615	C	A	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.694;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:105,104:0.50:209
chr2	190321930	rs112846132	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	190321978	rs138257723	G	GA	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-1.146;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:16,27:0.63:43
chr2	190322196	rs10497700	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	190323530	rs1157910	A	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:111,103:0.48:214
chr2	190323964	rs78478456	G	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	190324047	rs111249433	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	190324195	rs74699810	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr2	190324215	rs75875035	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	190324275	rs77151836	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	190327076	rs2304703	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	190327126	rs2304702	C	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	190327179	rs77698215	A	G	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.649;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:70,36:0.34:106
chr2	190327389	rs112863490	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	190328382	rs113875420	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr2	190328561	rs77997560	C	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:73,62:0.46:135
chr2	190328699	rs142586889	A	AT	1005.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr2	190329873	rs13429203	A	G	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:140,113:0.45:253
chr2	190331081	rs76407376	A	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr2	190332108	rs7606348	T	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	190430177	rs2304704	A	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:107,88:0.45:195
chr2	190443304	rs1439815	C	T	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	190444630	rs1439816	C	G	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	190445076	rs4287798	T	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	190448047	rs987028	T	C	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	190448544	.	CACACATAT	C	432.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=39.34;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	190448546	.	CACATAT	C	796	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=38;MMLQ=28;MQ=58.14;NF=0;NR=20;PP=796;QD=39.95;SC=CACACACACACACATATACAC;SbPval=1.0;Source=Platypus;TC=23;TCF=0;TCR=23;TR=20;WE=190448560;WS=190448534;set=Platypus	GT:AD:AF:DP	0/1:3,20:0.87:23
chr2	190448550	.	TAT	CAC	2434	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=55;MMLQ=28;MQ=59.23;NF=0;NR=13;PP=2434;QD=191.343682682;SC=CACACACACATATACACAGTA;SbPval=1.0;Source=Platypus;TC=27;TCF=3;TCR=24;TR=13;WE=190448560;WS=190448534;set=Platypus	GT:AD:AF:DP	1/1:14,13:0.48:27
chr2	190531426	rs1437880	G	A	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	190541842	rs67184798	AT	A	162.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=1.057;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	190570001	rs11319823	TA	T	282.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	190593311	rs1225087	C	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	190595258	rs1225090	G	T	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	190602513	rs1225099	T	C	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	190603201	rs56352098	T	TA	234.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.77;ReadPosRankSum=1.645;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr2	190611084	rs13002216	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	190611414	rs2254166	T	C	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	190611459	rs2254167	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	190617643	rs2243876	A	G	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	190636411	rs6942	C	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	190640475	rs3816196	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	190643257	rs7591929	G	A	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	190647108	rs10168387	T	C	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	190719607	rs151325573	G	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr2	190722170	rs735558	G	A	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=0.954;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:32,43:0.57:75
chr2	190722343	rs735559	T	C	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	190926859	rs11333758	GT	G	601.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr2	191064753	rs6753459	C	T	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=1.986;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:122,99:0.45:221
chr2	191109448	rs7582209	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr2	191109533	rs11883568	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,53:0.44:120
chr2	191114229	rs2244076	T	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.46;ReadPosRankSum=-2.310;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	191114235	rs2244075	G	A	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.93;ReadPosRankSum=-0.972;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	191116355	rs3791792	A	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr2	191117206	rs291402	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	191159232	rs188339	A	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	191161622	rs1058180	T	C	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.647;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:136,116:0.46:252
chr2	191175639	rs36074132	GT	G	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	191184475	rs291466	A	G	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:129,132:0.51:261
chr2	191184524	rs3749022	C	T	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	191208795	rs760307	C	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr2	191224981	rs4656	G	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr2	191227235	rs2067421	T	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	191227492	rs972689	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	191231458	rs11544940	G	A	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	191231503	rs10931450	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chr2	191235901	rs1882891	A	C	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr2	191334424	rs10193212	G	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	191334459	rs145257711	A	ATTTTTAT	1198.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=49.95;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	191354491	rs3811609	T	C	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:65,63:0.49:128
chr2	191354658	rs59123011	C	CCT	3737.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	191364708	rs72907168	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,51:0.40:129
chr2	191364828	rs149142084	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:141,109:0.44:250
chr2	191373775	rs6707244	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	191375375	rs6712426	G	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	191379268	rs4586658	G	A	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	191390126	rs10931458	G	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	191399201	rs12619125	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	191399433	rs12693579	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	191535311	rs2109957	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	191537793	rs5837195	GT	G	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.122;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr2	191545606	rs13382951	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	191545821	rs12618075	A	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=1.267;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	191552121	.	CAAAA	C	1101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=10.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=1.828;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:23,44:0.66:67
chr2	191765206	rs3771313	T	C	96.90	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	191777768	rs11363248	AT	A	94.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	191788482	rs62179862	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	191839976	rs1914408	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr2	191840709	rs17749316	C	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr2	191841759	rs2066804	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr2	191843830	rs2280235	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr2	191848312	rs12477076	T	C	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	191922307	rs56816363	CT	C	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.34;ReadPosRankSum=1.150;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	191922841	rs3024866	G	A	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	191996518	rs1551443	T	C	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	192160839	rs4853574	A	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr2	192160875	rs4853575	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr2	192161058	rs11397643	G	GT	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	192161103	rs10622945	A	ATTCT	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.48;ReadPosRankSum=-1.944;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	192214833	rs67146186	A	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr2	192214966	rs59642822	T	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr2	192225294	rs2138913	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr2	192225477	rs10692524	G	GTGTTGT	535.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=-0.983;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	192226908	rs2271769	G	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	192227230	rs12988758	T	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	192247808	rs34460997	A	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	192247836	rs4641883	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	192248174	rs79897977	T	A	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	192250543	rs13000398	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	192250568	rs13026888	T	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	192250726	rs13018796	G	A	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	192279327	rs2271767	T	C	6414.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	192701393	rs10167187	A	G	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	192711162	rs4471838	A	C	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	192818609	.	ATTT	A	471.73	.	AC=1;AF=0.500;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=15.72;SOR=4.804;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	192820898	rs7606017	T	G	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	196582816	rs842736	T	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	196602582	rs75708451	A	AAAT	1952.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	196636662	rs1145939	C	G	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	196663997	rs7567285	T	C	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	196673533	rs13411834	A	G	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	196681284	rs2280452	A	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	196682630	rs975417	C	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	196756535	rs11292337	GA	G	1945.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:5,101:0.95:106
chr2	196762491	rs5837482	TA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.407;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr2	196791276	rs1489802	T	G	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	196851911	rs10931715	G	A	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	196866420	rs6434811	C	T	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	196891449	rs1072600	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	196892695	rs62203391	T	C	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:76,109:0.59:185
chr2	196912067	rs4850381	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	196915991	rs10174065	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	196933188	rs13028754	T	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	196935811	rs12693777	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	197004439	rs1054537	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	197008529	rs1568368	C	T	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	197010823	rs2271888	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	197021141	rs6712829	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	197021276	rs10931726	T	C	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	197021372	rs12478353	T	A	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	197065889	rs3795921	A	G	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	197065964	rs3820908	C	A	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	197066175	rs4566380	T	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.41;SOR=2.265;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	197084982	rs2305568	T	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr2	197085695	rs78356679	C	T	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:56,68:0.55:124
chr2	197086912	rs16847479	G	A	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:98,102:0.51:200
chr2	197090419	rs58234399	TTGAC	T	777.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr2	197093005	rs3748874	A	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.06;ReadPosRankSum=-0.547;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	197106759	rs2045277	T	C	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:61,89:0.59:150
chr2	197118604	rs78278395	A	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	197118729	rs4850690	C	T	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	197135889	rs12472825	T	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr2	197138653	rs72923327	GC	AA	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=2.029;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:42,35:0.45:77
chr2	197171104	rs6729640	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	197171175	rs4241189	C	T	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	197171183	rs12468199	C	T	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	197172816	rs2305567	G	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	197184321	rs1531111	C	T	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	197504545	rs1879128	C	G	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	197534692	rs7590083	C	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	197583392	rs376168638	G	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr2	197584504	rs2680970	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	197593787	rs2460436	C	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	197594203	rs2577580	G	C	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	197595762	rs2680967	G	A	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	197744755	rs77319831	T	C	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-1.465;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:47,27:0.36:74
chr2	197758148	rs332299	C	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	197761876	rs138525017	A	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr2	197762941	.	C	CA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-1.350;QD=2.05;ReadPosRankSum=0.096;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr2	197777589	rs12693800	C	T	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	197854233	rs144034091	T	TAC	904.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr2	197863214	rs1966703	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr2	197864996	rs6434897	A	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr2	197866470	rs12478175	T	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr2	197872727	rs57048274	T	TTCTC	758.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr2	197943382	rs139294990	ATG	A	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=5.414;QD=0.84;ReadPosRankSum=-1.324;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:165,22:0.12:187
chr2	197953372	rs146161383	TAAGTC	T	3907.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	197954780	rs4300850	A	G	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	197964689	rs56077856	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:79,62:0.44:141
chr2	197986048	rs2697270	T	C	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	197989945	rs2579395	T	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	197990909	rs2918628	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	198001319	rs3731569	A	G	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,91:0.48:189
chr2	198001443	rs2579387	C	T	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	198011878	rs2272407	G	A	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:89,82:0.48:171
chr2	198011904	rs2249470	G	A	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	198175297	rs10931780	G	C	3200.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.549;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.67;ReadPosRankSum=0.304;SOR=0.640;set=HC	GT:AD:AF:DP	1/1:1,119:0.99:120
chr2	198257652	rs11380582	T	TA	228.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;MQRankSum=0.692;QD=14.27;ReadPosRankSum=-1.695;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr2	198257795	rs4685	T	C	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	198265173	rs788017	T	A	1434.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=2.342;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	198265526	rs788018	A	G	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	198266943	rs788019	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	198267770	rs3217350	G	GAA	1511.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	198281743	rs699318	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	198283305	rs788023	T	C	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	198355135	rs148517124	T	TTG	1161.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.06;QD=35.20;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	198362018	rs8539	T	C	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	198365043	rs1116734	C	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	198380635	rs75909202	C	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	198508951	rs10497806	G	A	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	198511086	rs16866970	G	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	198643631	rs700655	G	A	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	198643651	rs72918816	A	G	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.412;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:61,57:0.48:118
chr2	198669754	rs770659	G	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	198669871	rs770658	G	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	198950240	rs1064213	G	A	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	200173684	rs10153730	T	G	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	200244975	rs17252512	A	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.671;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr2	200245245	rs1348813	C	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	200298313	rs7596597	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.91;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	200677625	rs2030653	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	200684249	.	T	TA	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.542;QD=2.18;ReadPosRankSum=0.139;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr2	200710706	rs769960	T	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr2	200790050	rs150129946	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr2	200800493	.	A	G	119	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=2;MGOF=103;MMLQ=24;MQ=60.0;NF=7;NR=0;PP=119;QD=21.9673160782;SC=ACACACATACACACACACGCA;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=7;WE=200800501;WS=200800491;set=Platypus	GT:AD:AF:DP	1/1:1,7:0.88:8
chr2	200820505	rs281766	T	G	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	200873144	rs113489455	AATACAAAAAAAACTTG	A	3898.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	201171014	rs3739121	G	C	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	201171191	rs10931898	C	G	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	201171207	rs12614621	G	C	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	201194279	rs3739119	C	A	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	201254049	rs3820881	G	C	6318.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	201254171	rs4674015	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	201277011	.	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.168;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr2	201337667	rs6723687	A	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,69:0.51:136
chr2	201337806	rs11402412	G	GA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=2.332;QD=4.30;ReadPosRankSum=0.713;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	201354935	rs3795969	C	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:77,48:0.38:125
chr2	201371768	rs3739116	G	T	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.646;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:69,60:0.47:129
chr2	201397569	rs842940	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	201397647	rs842939	A	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	201437328	rs35987478	C	A	3391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.07;ReadPosRankSum=-0.773;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:83,86:0.51:169
chr2	201437334	rs12052989	T	C	3429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.71;ReadPosRankSum=-2.133;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:82,92:0.53:174
chr2	201437449	.	A	G	2409.77	.	AC=1;AF=0.500;AN=2;DP=193;set=Intersection	GT:AD:AF:DP	0/1:85,107:0.56:192
chr2	201440868	rs116691121	A	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.862;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr2	201451006	rs4470327	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-2.043;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr2	201464295	rs10179964	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr2	201467231	rs2293524	A	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	201470233	rs200778985	ATTT	A,ATT	757.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	1/2:0.47,0.53:30
chr2	201473674	rs2470902	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	201474237	rs4672858	A	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr2	201485572	rs4672865	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr2	201485649	rs4672866	T	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	201485747	rs6761252	G	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr2	201485830	rs6761375	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:68,51:0.43:119
chr2	201488758	rs2348021	A	G	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	201515939	rs868810	T	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	201521472	rs2287011	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr2	201521493	rs79540345	A	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr2	201523736	rs10931910	A	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	201534136	rs2715907	C	T	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	201677454	rs2270281	C	T	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	201677791	rs2270280	T	C	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	201683695	rs2881880	T	C	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	201686122	rs3815501	T	C	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	201686666	rs6705053	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	201719258	rs5837758	CA	C	256.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.781;QD=8.27;ReadPosRankSum=-2.098;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr2	201881948	.	G	GT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.979;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr2	202000546	.	C	G	302.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	202025131	rs2518142	G	A	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	202025621	rs1594	A	G	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	202050677	rs3900115	A	G	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	202070735	rs6712872	A	T	492.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	202082459	rs13006529	T	A	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	202122995	rs3769823	A	G	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	202139739	rs35508730	C	CT	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-1.910;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	202151163	rs3769818	A	G	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	202152162	rs13113	T	A	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr2	202153225	rs700635	C	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	202153252	rs700636	A	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	202211443	rs1406122	C	T	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	202215409	rs71022364	C	CAAAACAAAACAAAACAA	537.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	202215492	rs13014235	C	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	202245244	rs3795966	A	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	202245944	rs3832088	TAA	T	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	202245955	rs72937131	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=42.05;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	202246034	rs3731709	G	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	202248788	rs7579617	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	202248979	rs7579853	T	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	202257930	rs3815515	C	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	202260049	rs2256584	G	A	4808.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	202264156	rs13022344	C	T	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	202264316	rs6732993	C	T	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	202272032	rs11691865	T	A	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	202284236	rs113582398	C	CTTAAT	3371.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	202285100	rs4507084	A	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	202325632	rs57250433	G	GT	159.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-0.000;QD=13.31;ReadPosRankSum=0.157;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	202337730	rs1019299	A	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	202342402	rs12990557	G	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	202344179	rs34469362	GT	G	657.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr2	202357949	rs2714482	A	C	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	202402250	rs3083390	AAC	A	551.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	202410147	rs10931955	C	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	202410300	rs10804117	A	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	202410395	rs10931956	G	C	102.81	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	202430428	rs35855277	AT	A	522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=1.432;QD=10.05;ReadPosRankSum=0.113;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:9,43:0.83:52
chr2	202447009	rs13425990	C	T	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	202468136	rs10205247	T	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	202469361	rs12474206	C	T	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	202469472	rs7572583	A	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	202491995	rs2540450	G	A	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	202505545	rs56321285	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	202505740	rs2540424	T	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	202507277	rs2241134	C	T	2137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.692;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:154,110:0.42:264
chr2	202507353	rs2241133	G	C	3996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-2.003;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:237,195:0.45:432
chr2	202507982	rs6723016	T	C	7459.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	202507997	.	G	GC	2345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.685;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=20.087;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.491;QD=10.38;ReadPosRankSum=0.798;SOR=2.877;set=HC	GT:AD:AF:DP	0/1:152,74:0.33:226
chr2	202508005	.	A	C	2827.77	.	AC=1;AF=0.500;AN=2;DP=264;set=Intersection	GT:AD:AF:DP	0/1:170,91:0.35:261
chr2	202508135	rs113186360	C	T	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:116,97:0.46:213
chr2	202509814	rs3754932	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	202512435	rs11894207	G	A	1672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=1.319;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:58,45:0.44:103
chr2	202512449	rs11894115	C	T	1744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=1.352;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:64,49:0.43:113
chr2	202514201	rs10194353	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr2	202523347	rs2597900	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	202526353	rs12052740	T	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	202526366	rs62193397	G	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	202528830	rs74887695	A	AT	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:97,61:0.39:158
chr2	202531136	rs17384314	G	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr2	202534303	rs145833090	TATAGGAAGAGCTTAA	T	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	202538300	rs11375204	G	GA	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr2	202546113	rs1208073	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	202549626	rs1812933	A	G	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	202549666	rs1812932	A	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-1.677;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	202549684	rs71025250	GA	G	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=0.676;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	202557702	rs6725443	C	T	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	202566411	rs3219172	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	202566741	rs7603563	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	202569992	rs3219171	A	T	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	202570232	rs3219170	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	202574825	rs1210940	C	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	202575821	rs3219168	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	202575907	rs2882231	A	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	202580370	rs3219167	G	A	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	202598113	rs2276615	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr2	202606639	rs3731703	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr2	202608877	rs4673207	C	A	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	202625615	rs3219156	C	T	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	202626437	rs3219154	T	C	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:93,63:0.40:156
chr2	202671381	rs2192672	C	G	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.111;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	202672143	rs3214362	G	GA	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	202688293	rs4675229	A	G	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	202712095	rs917958	A	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	202737066	.	GAAGGGATCTTT	G	2982	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=5;NR=26;PP=2982;QD=20;SC=ACTACCTCAGGAAGGGATCTT;SbPval=0.25;Source=Platypus;TC=93;TCF=10;TCR=83;TR=31;WE=202737096;WS=202737056;set=Platypus	GT:AD:AF:DP	1/0:62,31:0.33:93
chr2	202737075	rs201971784	TTTAAGGGA	T	2433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.30;ReadPosRankSum=0.651;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:68,65:0.49:133
chr2	202737085	rs374280027	CTTT	C	2461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.85;ReadPosRankSum=0.134;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:58,66:0.53:124
chr2	202737088	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=20;NR=31;PP=2962;QD=20;SC=AAGGGATCTTTAAGCAGGATT;SbPval=0.56;Source=Platypus;TC=107;TCF=42;TCR=65;TR=51;WE=202737096;WS=202737056;set=Platypus	GT:AD:AF:DP	1/0:56,51:0.48:107
chr2	202741247	rs2072503	G	C	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-1.283;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:50,46:0.48:96
chr2	202741256	rs4675235	A	T	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	202741269	rs4675236	G	A	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	202741269	.	GCTTTGCCC	ACTTTGCCC,ACTTTGCCG	1196	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=4;HapScore=4;MGOF=2;MMLQ=22;MQ=60.0;NF=40,18;NR=35,15;PP=1196,1194;QD=16.410282834;SC=TCACTTGCCCGCTTTGCCCTG;SbPval=0.56;Source=Platypus;TC=75;TCF=40;TCR=35;TR=75,33;WE=202741285;WS=202741237;set=Platypus	GT:AF:DP	0/1:1.00:75
chr2	202741277	rs2072502	C	G	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=1.290;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:39,43:0.52:82
chr2	202753052	rs72930918	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	202939654	rs10221698	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	202955454	rs1568535	G	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	202962310	rs11288166	CT	C	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.246;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=1.571;QD=7.09;ReadPosRankSum=-0.268;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr2	202964380	rs2882486	G	A	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	202964528	rs2350722	T	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	202964986	rs6755174	C	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	202965222	rs6726731	A	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.53;SOR=3.202;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	202978198	.	G	GT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=2.280;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:113,28:0.20:141
chr2	202989742	rs56243480	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	202990653	rs56293728	G	A	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	202990704	.	T	C	151	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=2;MGOF=5;MMLQ=24;MQ=42.36;NF=0;NR=6;PP=151;QD=30.9618687579;SC=TGAGATGGAGTTTCGCTCTTG;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=6;WE=202990712;WS=202990694;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	203000730	rs9679591	A	T	1005.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.318;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=1.081;SOR=0.678;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr2	203000810	rs35537724	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	203003066	rs3043926	G	GGTGT,GGT	3106.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=77;MQ=60.14;set=Intersection	GT:AF:DP	1/1:1.00:71
chr2	203029951	rs7582695	T	A	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	203051886	rs6722588	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	203072693	rs55694983	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	203079307	rs3769817	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	203139738	rs11397579	A	AC	619.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	203621800	rs16839308	A	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	203630102	rs373287818	CT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.520;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:82,25:0.23:107
chr2	203650558	rs145836386	TA	T	566.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	203651278	rs55689177	CA	C	676.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	203651475	rs57934594	A	AT	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.065;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr2	203661779	rs6704822	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	203690387	rs1344959	G	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	203693559	rs4675296	C	G	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	203748436	rs200085067	C	T	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr2	203748544	rs34788166	A	AT	943.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:5,49:0.91:54
chr2	203748594	rs10196719	A	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	203749392	rs3050865	C	CTTT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	203820275	rs3731695	T	C	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	203880992	rs2351524	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	203921270	rs4673241	A	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	203996870	rs6748898	A	G	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	204002809	rs10180815	A	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	204036545	rs5837845	C	CT	161.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.344;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	204054834	rs62182253	G	A	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	204054882	rs148174619	TACACACACACACACACACAC	T	1083.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.70;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr2	204062061	rs4675323	A	G	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	204090887	rs2351773	C	G	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	204110748	rs56317341	G	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	204111394	rs13015873	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	204111398	rs10586509	GTTAA	G	1751.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	204111443	rs6435176	A	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	204111705	rs6751894	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	204116660	rs3731694	A	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	204116690	rs2043449	C	T	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	204116887	rs2351771	T	G	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	204137574	.	CTT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.84;ReadPosRankSum=0.112;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	204154552	rs1048013	C	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	204154686	rs10170454	A	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	204206977	rs4675333	C	T	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	204216255	rs35382487	G	GT	246.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=1.196;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr2	204261723	rs3731652	G	C	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr2	204305093	rs3814365	T	C	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.058;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:54,48:0.47:102
chr2	204322298	rs2469953	T	C	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.328;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:73,91:0.55:164
chr2	204732850	rs231776	A	G	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	204822670	rs5837889	A	AT	1031.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:16,66:0.80:82
chr2	204824178	rs146016344	AGT	A	1534.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;QD=31.32;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	204824283	rs10172036	T	G	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	205829991	rs236843	C	T	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	205912210	rs7563474	C	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	205969023	rs2289024	A	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	205969220	rs2289025	G	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:97,77:0.44:174
chr2	205978113	rs368750104	CA	C	142.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-1.576;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	205978114	rs1848948	A	G	318.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=0.945;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	205978118	rs5837952	GT	G	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-0.970;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	205978347	rs5837953	T	TGATTTGA	2093.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr2	205986289	rs148046878	C	G	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,52:0.51:101
chr2	205986767	rs1434161	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	205990353	rs2276676	C	T	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-0.250;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:60,44:0.42:104
chr2	206036918	rs736320	C	T	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	206041366	rs11329569	TA	T	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.965;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr2	206050355	rs62172732	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr2	206166580	rs11686273	G	A	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,69:0.54:128
chr2	206364487	rs11687914	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	206364737	rs10197347	T	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr2	206364791	rs11683289	C	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.414;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr2	206418032	rs6730102	G	A	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	206481612	rs35710107	TGA	T	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=-0.549;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	206548221	rs190713523	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr2	206562250	rs849558	C	T	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	206565500	rs3771051	C	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr2	206581033	rs849541	G	A	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	206592695	rs849526	T	C	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=0.976;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:62,80:0.56:142
chr2	206608039	rs849568	T	C	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	206614646	rs10932123	T	G	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	206630073	.	AAC	A	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.600;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr2	206632302	.	TA	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=1.526;QD=5.54;ReadPosRankSum=0.304;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	206884595	rs11366043	AT	A	711.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr2	206911191	rs34828561	C	CA	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.405;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr2	206921451	rs818009	G	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr2	206921763	rs17220727	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	206927850	rs17286674	G	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	206995010	rs4147725	A	G	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr2	207003438	rs4147729	TA	T	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	207006676	rs1801318	T	C	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:157,148:0.49:305
chr2	207006825	rs4147718	C	A	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:73,65:0.47:138
chr2	207008675	rs35409448	C	CT	3402.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:92,103:0.53:195
chr2	207008763	rs1127566	C	A	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:191,137:0.42:328
chr2	207023595	rs4147709	C	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	207023620	rs4147708	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	207024886	rs113729178	G	GC	425.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.24;QD=28.38;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	207025444	rs11689362	T	C	4460.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:194,210:0.52:404
chr2	207027407	rs35430253	C	CT	1046.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr2	207041053	rs3732083	T	C	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:64,67:0.51:131
chr2	207041441	rs3732082	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:119,86:0.42:205
chr2	207172627	rs7582864	A	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr2	207174316	rs3732084	T	C	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,56:0.41:135
chr2	207345826	rs3213811	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	207452151	rs3832131	GT	G	90.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr2	207472573	rs1991537	A	G	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	207472606	rs5838036	G	GT	197.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	207472683	rs78458117	C	CTA	940.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr2	207559646	.	GAA	G	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.900;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	207582852	rs16838691	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	207583169	rs16838693	T	C	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr2	207603234	rs2287631	T	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=-0.872;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:12,32:0.73:44
chr2	207603474	rs4675634	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.06;ReadPosRankSum=0.771;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	207604130	rs6722033	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	207605610	rs10173497	A	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.413;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-1.278;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	207605733	rs10197325	C	T	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr2	207605882	rs10173707	A	G	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=1.391;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:32,37:0.54:69
chr2	207605976	rs10209871	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	207606094	rs4673362	A	G	117.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.73;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	207610047	rs4675635	C	T	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.097;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=0.062;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:37,60:0.62:97
chr2	207610454	.	CTTT	C	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.99;ReadPosRankSum=0.611;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr2	207621759	rs1990849	A	G	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	207625567	rs1862087	T	C	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	207629795	rs16838834	T	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	207629821	rs28365798	T	TGCAA	1582.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	207629846	rs28365797	A	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.56;SOR=3.080;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	207629904	rs3828294	G	A	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	207647981	rs2241347	C	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	207653455	.	C	CAA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.10;ReadPosRankSum=-1.006;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	207653653	rs76270461	G	A	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.35;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	207814273	rs75295922	C	A	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr2	207820276	rs13420911	G	A	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	207824384	rs11903403	T	G	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	207824548	rs1453168	G	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	207824650	rs1453169	A	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	207825656	rs13397039	A	T	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	207833848	rs7582092	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	207833983	rs7582305	A	G	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	207946141	rs2287507	A	G	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr2	207946164	rs2287506	T	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr2	207974818	rs2244923	C	T	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	207988613	rs2700166	C	T	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	207998800	rs2284934	C	T	1849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-1.234;QD=8.73;ReadPosRankSum=1.535;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:120,92:0.43:212
chr2	207998878	.	AT	A	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.287;QD=8.17;ReadPosRankSum=-1.014;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr2	207999021	rs2284933	G	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr2	208031724	rs2269070	G	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	208031796	rs2037893	C	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	208031992	rs1269424	T	A	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	208447642	rs12478868	A	T	795.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=11.05;ReadPosRankSum=1.250;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:31,41:0.57:72
chr2	208477852	rs2551949	G	A	8842.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr2	208477956	rs2709416	C	T	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	208633413	rs4675711	T	C	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	208693261	rs720632	C	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr2	208693307	rs720631	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.324;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr2	208717440	rs10932211	A	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	208811097	rs10932215	C	T	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	208841964	rs4441448	A	G	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	208986385	rs2305429	A	G	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	208986637	rs2305430	T	C	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	209007559	rs796287	T	G	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	209030330	rs34111482	G	GT	213.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.27;ReadPosRankSum=-1.247;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr2	209030400	rs73986528	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr2	209030572	rs6721025	A	G	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	209033097	rs13414543	A	G	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-0.364;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr2	209033138	rs7589065	C	T	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr2	209033173	rs7562540	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	209035485	rs6435420	T	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	209035658	rs6748431	C	T	7321.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr2	209035849	rs4292037	A	C	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	209036605	rs10932244	T	C	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=26.52;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	209036712	rs10804166	T	C	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	209036778	rs6435421	A	G	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	209046162	rs6435425	G	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	209046162	.	GTA	ATG	671	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=13;PP=671;QD=51.7477053473;SC=AATAAAATTGGTATGATTGTT;SbPval=0.64;Source=Platypus;TC=14;TCF=1;TCR=13;TR=14;WE=209046172;WS=209046152;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	209046164	rs6435426	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	209049830	rs60533219	T	TC	603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=34.892;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.000;QD=6.16;ReadPosRankSum=0.883;SOR=3.834;set=HC	GT:AD:AF:DP	0/1:55,43:0.44:98
chr2	209049840	rs10804167	C	T	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=36.241;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=-1.887;QD=11.92;ReadPosRankSum=-0.478;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:45,53:0.54:98
chr2	209049899	rs10497896	G	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr2	209051586	rs7572263	A	G	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=0.337;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr2	209101905	rs57383668	GA	G	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	209138946	rs6705163	C	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	209163556	rs7569723	C	T	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	209168853	rs893256	C	T	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	209176807	rs12624141	T	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	209182480	rs10174541	A	G	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	209182499	rs113250005	T	TA	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	209182548	rs10497898	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr2	209182677	rs112715599	CAGTTCAGCAGTGA	C	2810.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:101,75:0.43:176
chr2	209184844	rs934712	A	G	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	209184980	rs10932258	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	209184999	rs10932259	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	209189912	rs893255	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	209190330	rs2363468	T	C	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	209190519	rs893254	A	T	8955.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	209190528	rs893253	C	G	8913.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.27;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	209190632	rs999890	T	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:130,73:0.36:203
chr2	209190649	rs999891	A	G	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:117,73:0.38:190
chr2	209191082	rs1529979	C	A	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	209191099	rs1529978	T	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	209194696	rs1437414	G	C	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	209195099	rs1866045	G	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	209195133	rs12694109	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	209195491	rs112938452	G	GAGA	498.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	209198000	rs11885913	C	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr2	209199945	rs2363469	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	209201054	rs6744236	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	209201739	rs7596571	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	209203122	rs4675756	C	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	209204319	rs17699838	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	209204714	rs2289171	G	A	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-2.193;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:46,38:0.45:84
chr2	209209827	rs2304544	G	A	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=3.237;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	209209997	rs2043718	C	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	209212707	rs2304545	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr2	209214770	rs2118297	A	G	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	209215448	rs994696	A	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	209215586	rs994697	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	209219190	rs6435453	A	G	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	209220157	rs10208191	G	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	209224874	rs11357589	CA	C	1231.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	209293168	rs962595	C	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	209315573	rs1370371	G	A	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr2	209345944	rs34570534	CT	C	915.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.338;QD=12.90;ReadPosRankSum=1.087;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:8,63:0.89:71
chr2	209346020	rs61511423	T	TGCAACCTC	1373.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	209353607	rs6726003	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	209353656	rs11335842	GT	G	820.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	209358027	rs3820900	C	T	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	210517785	rs2254169	C	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	210594540	rs4673486	A	G	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	210594717	rs11389149	C	CT	1296.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	210594768	rs7594601	T	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	210659434	rs7603924	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	210678691	rs2159745	T	G	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	210682603	rs182186415	C	G	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=0.489;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:99,71:0.42:170
chr2	210704200	rs9288414	C	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr2	210705348	rs10178675	C	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:81,65:0.45:146
chr2	210714162	rs2191906	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:92,76:0.45:168
chr2	210737363	rs16843880	T	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	210745681	rs2370838	C	A	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	210745855	rs17748818	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr2	210786137	rs9288415	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	210846867	rs2723222	A	G	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=1.647;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:34,37:0.52:71
chr2	210874246	rs3738934	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	210880893	rs7570090	C	T	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=1.021;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:52,41:0.44:93
chr2	210882456	rs2243769	G	T	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.86;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	210882677	rs2723213	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	210889759	rs6435550	A	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr2	210896097	rs13009890	T	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr2	211059792	rs143405144	A	AT	803.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr2	211060050	rs2286963	T	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr2	211068103	.	G	GTTAAACATAACA	543.73	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr2	211068107	rs377085604	C	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=0.000;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr2	211068109	.	GGT	G	396.73	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr2	211069438	rs263677	G	A	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	211074909	rs3764913	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-0.335;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:42,35:0.45:77
chr2	211082924	rs10572520	CTTAAT	C	904.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr2	211158855	rs71350737	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	211163063	rs150329321	TAC	T	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=1.034;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	211168202	rs13025700	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	211168346	rs12469767	A	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr2	211319824	rs2287432	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr2	211341156	rs2287418	C	G	237.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	211341204	rs56033100	G	GC	107	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	211342502	rs17552879	G	A	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:111,91:0.45:202
chr2	211421452	rs3835047	A	ATCT	2765.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:73,72:0.50:145
chr2	211456637	rs1047883	A	G	2668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=0.522;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:146,77:0.35:223
chr2	211456637	.	ACC	GCT	1799	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=4;HapScore=1;MGOF=0;MMLQ=22;MQ=60.0;NF=38;NR=27;PP=1799;QD=28.4995057671;SC=CTTGGACAACACCCTCCCTGC;SbPval=0.68;Source=Platypus;TC=204;TCF=112;TCR=92;TR=65;WE=211456647;WS=211456627;set=Platypus	GT:AD:AF:DP	0/1:139,65:0.32:204
chr2	211456639	rs2229589	C	T	2668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=1.511;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:147,73:0.33:220
chr2	211481257	rs2287599	C	G	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:145,111:0.43:256
chr2	211481423	.	G	GT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=5.283;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.281;QD=1.38;ReadPosRankSum=-0.773;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr2	211504065	rs13409110	G	A	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-1.682;QD=18.82;ReadPosRankSum=1.258;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	211504074	rs13408918	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-1.517;QD=20.89;ReadPosRankSum=1.808;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	211513118	rs4673540	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	211515058	rs3213784	A	T	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr2	211521227	rs58225253	CT	C	832.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=0.663;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:8,55:0.87:63
chr2	211525420	rs41272671	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr2	211527827	rs5838215	GT	G	2987.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.534;QD=14.30;ReadPosRankSum=1.497;SOR=0.672;set=HC	GT:AD:AF:DP	1/1:23,186:0.89:209
chr2	211527861	.	C	T	2712.77	.	AC=1;AF=0.500;AN=2;DP=245;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:117,127:0.52:244
chr2	211532800	.	A	ATGTGTGTG	170.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	211533070	rs10932347	A	G	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr2	211540507	rs1047891	C	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr2	212251864	rs3748962	T	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr2	212252723	.	A	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.653;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:218,43:0.16:261
chr2	212252809	rs934607	G	A	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	212285103	rs2289086	T	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	212286934	rs3791709	A	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	212295875	rs6710946	C	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	212488828	rs146953835	GTC	G	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-0.546;QD=0.92;ReadPosRankSum=-0.670;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:48,8:0.14:56
chr2	212488870	rs3215298	G	GC	1729.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	212544026	rs67647157	CT	C	278.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr2	212569879	rs10221746	T	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	212569983	rs6723705	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	212576980	rs12994961	T	C	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:68,69:0.50:137
chr2	212578379	rs67894136	TA	T	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.950;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.074;QD=9.59;ReadPosRankSum=-1.593;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:24,54:0.69:78
chr2	212587321	rs13002712	G	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr2	212589986	rs35778743	T	C	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	212615516	rs6757068	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	213886454	rs2291241	A	T	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	213886647	rs141472671	A	ATTTTATCT	1401.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	213914343	rs2165444	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	214142631	rs13000409	G	C	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=0.502;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr2	214160817	rs61752198	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr2	214161773	rs975956	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr2	214161849	rs1488988	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr2	214174659	rs72935193	A	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	214182100	rs10183630	A	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	214228792	rs12469417	C	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	214228959	rs4146048	G	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	214233773	rs114668915	G	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-1.721;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	214233812	rs6752347	C	A	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	214261256	rs16850268	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr2	214261534	rs339815	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	214287064	rs75432170	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr2	214354811	rs61752199	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr2	215013777	rs5838412	GTA	G	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-1.126;QD=8.79;ReadPosRankSum=0.467;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	215013801	.	G	GTATA,GTGTA	685.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.96;MQRankSum=0.000;QD=15.95;ReadPosRankSum=1.472;SOR=1.038;set=HC	GT:AD:AF:DP	1/2:10,16,17:0.37,0.40:43
chr2	215102929	rs1912207	T	A	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	215593261	rs33960630	C	CTT	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.172;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	215595512	rs12614960	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	215595645	rs16852600	C	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr2	215595765	rs6435849	C	G	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	215595861	rs34664471	G	GA	359.92	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr2	215595872	rs28685662	G	A	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	215632124	rs5031008	ATT	A	2088.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	215632155	rs5031009	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	215632192	rs5031011	G	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	215632255	rs2070094	CA	TG	7886.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	215634055	rs6704780	C	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	215645464	rs2229571	C	G	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	215674090	rs35933323	T	G	7115.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	215674224	rs1048108	G	A	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	215674323	rs1129804	C	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	215674341	rs17489363	A	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	215674371	rs34732883	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	215797332	rs17426207	C	T	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.010;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:41,39:0.49:80
chr2	215797527	rs10532785	AATTC	A	869.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr2	215802112	rs3738884	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	215812297	rs2274412	G	A	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr2	215813919	rs17492389	A	G	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:54,85:0.61:139
chr2	215820013	rs10498027	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:132,108:0.45:240
chr2	215821549	rs67952713	C	CA	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.981;QD=6.56;ReadPosRankSum=-0.277;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr2	215821580	rs17492577	T	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	215833415	rs4673925	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=1.741;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr2	215833622	rs6756540	G	T	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	215840414	rs17493319	C	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	215840829	rs7594021	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	215843169	.	CTT	C	1432.73	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr2	215848034	rs7608150	T	C	182.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	215851246	rs7559069	A	G	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	215855780	rs4533467	G	A	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr2	215862383	rs1980844	G	A	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	215862633	rs1326748	C	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	215872334	rs940279	G	A	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	215874965	rs6733264	G	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	215875251	rs1409607	A	T	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	215876166	rs7560008	A	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	215876589	rs11388414	G	GT	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.983;QD=7.66;ReadPosRankSum=1.970;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr2	215878240	rs7594353	G	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.57;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	215878246	rs10192100	C	T	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=1.467;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	215880108	rs6753310	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	215890312	rs2177423	A	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	215890324	rs5838479	G	GT	279.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	215890352	rs5838480	GTT	G	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	215901592	rs1474331	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	215901774	rs17501837	C	T	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr2	215919166	rs10194592	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	215928972	rs1523721	G	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr2	215940242	rs6711179	T	C	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	215940283	.	GA	G	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=4.580;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.986;QD=0.89;ReadPosRankSum=-0.466;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:167,44:0.21:211
chr2	215976231	rs2948978	A	T	189.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	216176807	rs4535042	T	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.899;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr2	216182769	rs4672766	A	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	216190020	rs2372536	C	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr2	216190654	rs7563206	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr2	216190691	rs2177737	A	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	216191515	rs6751557	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr2	216198049	rs10179873	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr2	216200907	rs13002576	C	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:77,61:0.44:138
chr2	216209472	rs13010249	A	G	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:93,73:0.44:166
chr2	216211712	rs10932609	A	T	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	216212279	rs4673992	G	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	216212339	rs4673993	T	C	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr2	216213678	.	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.342;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	216214124	rs4672768	G	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	216214492	rs10498036	T	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	216226642	rs13394662	A	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	216229692	rs11651	A	G	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:131,101:0.44:232
chr2	216229850	rs7579867	C	T	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr2	216232556	rs7568287	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr2	216235089	rs1250209	C	T	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	216243832	rs1250204	T	C	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	216248305	rs1250203	G	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.24;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	216249587	rs13652	C	T	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	216249819	rs1250201	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	216253039	rs1250215	G	C	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	216256615	rs6709607	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	216262621	rs6725958	A	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr2	216263926	rs2692224	C	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	216263938	rs3832178	C	CT	816.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr2	216269030	.	T	TTTTTTTG	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.831;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr2	216269046	rs56380797	G	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-1.243;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr2	216269095	rs13306359	C	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr2	216269209	rs1053238	T	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,57:0.46:125
chr2	216269254	rs7589580	T	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr2	216271812	rs7592898	A	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	216272819	rs7570208	C	G	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr2	216272900	rs2577301	T	G	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	216273202	rs16853986	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr2	216274853	rs5838510	A	AAC	644.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,28:0.33:85
chr2	216288795	rs11693652	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	216295312	rs1250241	T	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	216295337	rs7586990	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	216296730	rs113868976	A	AT	1037.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.102;QD=6.33;ReadPosRankSum=1.132;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:90,74:0.45:164
chr2	216296860	rs7567647	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	216298084	rs2289202	G	A	3188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=3.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-0.306;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:125,154:0.55:279
chr2	216298230	rs10202709	C	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr2	216299281	rs1250246	A	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr2	216299571	rs10648691	T	TTAC	3321.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:73,86:0.54:159
chr2	216299629	rs1250247	C	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr2	216300482	rs1250259	T	A	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-1.506;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr2	216808354	rs150285041	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	216810468	rs62183184	A	C	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr2	216811707	rs1344695	G	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr2	216861273	rs2303845	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	216946614	rs57913734	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	216977701	rs41296930	C	G	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:83,86:0.51:169
chr2	216982370	rs3815855	C	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr2	216982452	rs28371548	A	G	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-1.012;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:84,54:0.39:138
chr2	216990820	rs41299778	A	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr2	216995591	rs1805382	T	C	1737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-1.063;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:92,89:0.49:181
chr2	217012901	rs207906	A	G	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	217024771	.	A	AT	207.73	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr2	217055171	rs12470053	A	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	217069151	rs1438162	A	G	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	217070057	rs4987039	G	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=0.151;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	217123958	rs169616	T	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	217148417	rs876771	C	A	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	217311635	rs79491615	C	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr2	217364452	rs284573	C	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	217364539	rs284572	C	T	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	217498290	rs5838590	C	CGCCGCTGCT	1430.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	217541582	rs2160549	T	C	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr2	217724544	rs62180545	A	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr2	217736131	rs2241191	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr2	218577575	rs1835333	T	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	218577813	rs148961389	AC	A	819.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr2	218604247	rs4672848	A	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	218604302	rs11336139	GA	G	2132.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.461;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.386;QD=18.39;ReadPosRankSum=2.366;SOR=0.562;set=HC	GT:AD:AF:DP	1/1:7,109:0.94:116
chr2	218669173	rs182851722	G	A	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:107,101:0.49:208
chr2	218672782	rs34831382	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	218674697	rs918949	C	T	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	218675144	rs918950	G	A	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	218675199	rs1035672	G	A	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	218682474	rs12694422	A	G	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr2	218682771	rs3796026	A	G	5220.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	218683154	rs2571445	A	G	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	218683257	rs2571442	A	G	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	218683368	rs34144104	C	T	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	218694510	rs55877504	CT	C	2937.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	218694512	rs55694913	T	G	2946.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	218694551	rs16858298	A	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	218694842	rs4674219	C	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	218694962	rs10165160	C	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	218712918	rs3796031	C	T	7351.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr2	218745477	rs2288164	G	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr2	218747190	rs2303383	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-1.141;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	218749626	rs2288165	T	C	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,73:0.54:135
chr2	218750359	rs6714587	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=2.056;QD=13.99;ReadPosRankSum=1.708;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	218750377	rs12990490	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	218750453	rs35040165	A	AG	2315.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	218750703	rs2288166	C	T	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=2.151;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:65,56:0.46:121
chr2	218750731	rs2288167	G	C	2202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=2.723;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:67,58:0.46:125
chr2	218750734	rs2288168	T	A	2202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=2.572;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:68,58:0.46:126
chr2	218750817	rs10211238	T	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-2.075;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:51,39:0.43:90
chr2	218758070	rs56217129	C	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.152;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.738;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-1.241;QD=5.74;ReadPosRankSum=-0.571;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	218758123	rs141673800	G	GCGCACA	952.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.96;MQRankSum=0.820;QD=25.75;ReadPosRankSum=2.693;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr2	218759674	rs2288169	G	C	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:103,97:0.48:200
chr2	218768422	rs3791936	T	G	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	218770003	rs7600493	G	A	13160.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:2,485:1.00:487
chr2	218770984	rs2288170	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr2	218801767	rs4674232	C	T	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	218801898	rs111945882	TCTACTCCC	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.765;QD=4.30;ReadPosRankSum=-1.803;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	218935299	rs13385042	T	C	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,80:0.54:149
chr2	218937850	rs55900869	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr2	218937860	rs10211510	G	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr2	218938244	rs56200756	T	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr2	218940259	rs7423696	C	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,58:0.53:109
chr2	218940418	rs4674246	C	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.632;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.000;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr2	218999705	rs11574748	C	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;MQ=59.89;set=Intersection	GT:AD:AF:DP	0/1:62,72:0.54:134
chr2	219000310	rs2230054	C	T	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:190,173:0.48:363
chr2	219029108	rs2234671	C	G	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:130,126:0.49:256
chr2	219082119	rs2271541	G	T	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr2	219082330	rs12694432	A	G	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,80:0.54:149
chr2	219093278	rs60528331	A	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	219099260	rs1018288	G	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	219099484	rs10932765	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr2	219103313	rs201794824	CTTT	C	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.524;QD=13.49;ReadPosRankSum=-0.780;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	219103580	rs10169718	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr2	219103612	rs192749243	G	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr2	219104316	rs34974153	AT	A	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.569;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.290;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.156;QD=4.62;ReadPosRankSum=0.199;SOR=1.580;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr2	219117482	rs35271699	G	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	219128506	rs2292549	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	219138940	rs4791	C	T	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:75,66:0.47:141
chr2	219139573	rs6734242	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	219140288	rs2292550	G	C	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr2	219142023	rs2168703	G	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	219142491	rs2271543	C	T	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr2	219142492	rs2168704	G	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,48:0.44:109
chr2	219142594	rs3817266	C	T	3036.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:123,140:0.53:263
chr2	219142773	rs6707559	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr2	219143229	rs2292551	G	A	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:134,131:0.49:265
chr2	219143327	rs2292552	T	C	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:96,118:0.55:214
chr2	219144089	rs12987180	G	A	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr2	219144149	rs12987219	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr2	219144815	rs2045435	T	C	13271.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr2	219146607	rs7585702	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	219146803	rs2292553	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	219146868	rs2292554	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	219146882	rs2292555	G	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	219153982	rs34353396	T	C	120.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	219153983	rs10707182	GA	G	522.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	219187901	rs1870125	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr2	219206435	rs62182085	C	G	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	219206645	rs62182086	A	G	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	219209393	rs1350336	A	G	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	219221982	.	G	GTCTCTC	239.77	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=34.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	219222733	rs62182089	G	A	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	219231807	rs3845833	C	T	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	219249013	rs2276631	C	T	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	219249771	rs6734861	C	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	219250003	rs3731865	G	C	9397.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr2	219251176	rs11405187	G	GA	99.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.31;ReadPosRankSum=0.871;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	219252377	rs2290708	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	219254622	rs2695342	A	G	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	219254842	rs3816560	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	219257688	rs2045433	T	C	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	219259270	rs2279015	G	A	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	219263277	rs2695344	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	219265094	rs2579958	T	C	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	219265136	rs11463820	T	TC	3632.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	219266204	rs2252235	T	C	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:71,61:0.46:132
chr2	219266423	rs2227251	C	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr2	219267781	rs2227255	C	T	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:113,94:0.45:207
chr2	219267913	rs2227258	A	G	3880.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:176,178:0.50:354
chr2	219288382	rs4672893	A	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	219288899	rs3731866	C	T	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.811;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr2	219294258	rs6720403	A	C	6288.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	219296545	rs17572485	G	A	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	219319657	rs6436058	A	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	219320233	rs5838698	GA	G	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=8.831;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.685;QD=11.16;ReadPosRankSum=1.651;SOR=2.770;set=HC	GT:AD:AF:DP	0/1:12,61:0.84:73
chr2	219445893	.	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=0.827;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	219447612	rs111430766	CT	C	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.722;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr2	219447912	rs2952825	A	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.99;QD=35.73;SOR=1.641;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	219447952	.	GTGTGTCTCTCTCTCTC	G	770	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=1;MGOF=42;MMLQ=28;MQ=55.47;NF=1;NR=40;PP=770;QD=18.8536585366;SC=GTGTGTGTGTGTGTGTCTCTC;SbPval=0.55;Source=Platypus;TC=51;TCF=1;TCR=50;TR=41;WE=219447975;WS=219447940;set=Platypus	GT:AD:AF:DP	1/0:10,41:0.80:51
chr2	219508372	rs3770213	A	T	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	219513782	rs4674322	T	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,63:0.46:136
chr2	219525582	rs6722185	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	219527005	rs2303561	C	T	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	219529348	rs2243911	C	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	219532903	rs2556384	C	T	6470.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	219532903	.	CGG	TGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=67;NR=55;PP=2947;QD=20;SC=ACTGCTGAAGCGGTCCACCCC;SbPval=0.49;Source=Platypus;TC=126;TCF=70;TCR=56;TR=122;WE=219532913;WS=219532893;set=Platypus	GT:AD:AF:DP	1/1:4,122:0.97:126
chr2	219532905	rs2556385	G	A	6470.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	219541056	rs2556388	T	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	219545309	rs2303565	T	C	11168.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr2	219545347	rs55839518	T	C	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:194,210:0.52:404
chr2	219553120	rs187987883	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr2	219555262	rs1344642	G	A	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	219558193	rs55996799	C	G	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	219562675	rs1863704	G	A	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	219602499	rs3731877	G	C	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	219602819	rs3731876	G	A	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	219605118	rs7562426	G	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	219609776	rs2272191	G	A	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	219609995	rs2272190	G	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	219610322	rs2272189	G	A	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	219610433	rs586194	A	G	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	219612282	rs2272188	A	G	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	219614205	.	T	TC	221.73	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	219616610	rs72027596	C	CTTT	1088.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=0.481;QD=35.12;ReadPosRankSum=0.785;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr2	219616633	rs59713184	C	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=43.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	219616681	rs6708650	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	219618237	rs6436073	A	C	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	219618497	rs6757772	T	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	219618708	rs55900247	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	219691566	rs1467320	A	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	219692527	rs11385903	G	GC	4583.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	219692790	rs5838710	A	AG	3172.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	219696014	rs650898	G	A	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	219736472	rs13417214	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr2	219884464	rs73090806	C	G	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr2	219884484	rs12464687	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	219888064	.	G	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.814;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr2	219888259	rs11891205	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	219889022	rs9653350	C	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.06;ReadPosRankSum=1.855;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	219890979	rs7560948	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	219892243	.	G	A	1722.77	.	AC=1;AF=0.500;AN=2;DP=176;set=Intersection	GT:AD:AF:DP	0/1:95,81:0.46:176
chr2	219895548	rs56411706	C	A	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:114,71:0.38:185
chr2	219895588	rs56068521	C	T	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr2	219900068	rs17852959	C	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr2	219903258	rs6736922	T	G	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	219903723	rs4674354	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	219903787	rs4672910	T	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	219905247	rs3736403	T	C	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr2	219906066	rs11674400	C	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	219920037	rs394452	A	G	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	219920412	rs3731881	A	G	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:105,108:0.51:213
chr2	219920565	rs3731878	C	T	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr2	219922073	rs34694069	G	GC	861.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr2	219923410	rs71974827	G	GAGA	2975.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr2	219941063	rs897477	G	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	220012576	rs7585742	G	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr2	220022176	rs6436120	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	220022435	rs2030452	G	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr2	220023196	rs2293069	A	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	220028900	rs6753739	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	220033830	rs3795986	A	G	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr2	220033956	rs6436121	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr2	220037393	rs4674361	A	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	220037444	rs17655123	G	A	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr2	220037666	rs1127102	A	G	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,64:0.50:128
chr2	220037756	rs1043160	A	G	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:91,81:0.47:172
chr2	220040330	rs1127101	A	G	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.475;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:77,58:0.43:135
chr2	220041091	rs6436123	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr2	220041433	rs6436124	C	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr2	220041455	rs6436125	C	T	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	220045035	rs7577690	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr2	220046349	rs2272017	G	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr2	220046840	rs3210652	G	A	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:149,138:0.48:287
chr2	220046975	rs3731900	C	A	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:162,153:0.49:315
chr2	220047393	rs3731901	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr2	220071803	rs6714820	C	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.95;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	220071879	rs66491679	TG	T	314.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	220072766	rs4674366	G	T	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	220072852	rs4674367	C	T	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr2	220078496	rs2139823	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr2	220083279	rs1109866	C	T	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	220083453	rs1109867	G	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	220085845	rs2276633	A	G	8213.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr2	220088248	rs908196	A	G	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	220089590	rs3216709	T	TG	2395.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	220089685	rs2276637	G	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	220100553	rs150402081	C	A	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:98,93:0.49:191
chr2	220100787	rs2293079	C	T	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:177,147:0.45:324
chr2	220108423	rs35328001	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	220113242	rs7601549	T	G	10786.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr2	220113384	rs8447	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr2	220118076	rs60456844	CG	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.434;QD=0.40;ReadPosRankSum=0.082;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:79,13:0.14:92
chr2	220118531	rs939574	G	C	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	220135208	rs2891733	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	220136155	rs7594971	T	C	15637.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr2	220136351	rs3731892	G	A	10997.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr2	220136371	rs3731894	T	C	9817.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr2	220156146	rs1983297	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr2	220162015	rs17847406	C	G	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:183,163:0.47:346
chr2	220162959	rs12105638	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr2	220165763	rs2292606	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-1.601;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr2	220168616	rs2271594	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:77,57:0.43:134
chr2	220172576	rs7591986	A	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr2	220172731	rs2292601	A	G	30.78	.	AC=1;AF=0.500;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr2	220173905	rs57623838	C	T	6071.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:130,279:0.68:409
chr2	220174056	rs6736979	T	C	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr2	220194247	rs3832109	A	AATT	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	220195446	rs6707009	C	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	220195738	rs34019246	GTCT	G	2061.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	220197207	rs2048737	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	220197321	rs2385405	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	220197388	rs2385404	C	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	220197492	rs2385402	C	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	220197821	rs5838736	CTA	C	755.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr2	220197929	rs138579161	CTTT	C	823.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	220239534	rs3731904	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	220239561	rs3731905	C	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	220246218	rs6436148	T	C	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	220249299	rs5838737	C	CT	1998.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	220249329	rs2002892	C	T	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	220250147	rs907679	A	G	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	220250322	rs878437	C	A	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	220250826	rs2271456	G	A	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	220250897	rs11352428	AG	A	1085.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	220251178	rs2271457	T	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	220251208	rs1040009	T	C	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,43:0.38:113
chr2	220252287	rs138394024	CTCG	C	4179.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	220264412	rs13018645	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr2	220264543	rs58721028	C	CAT	5004.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	220283259	rs1318299	A	G	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	220283277	rs2017800	T	C	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	220283592	rs111828114	C	T	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:85,99:0.54:184
chr2	220283826	rs907677	T	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	220284779	rs12991025	C	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=0.718;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr2	220285309	rs1058261	C	T	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:128,116:0.48:244
chr2	220285666	rs12920	G	C	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:151,140:0.48:291
chr2	220286142	rs1058284	G	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr2	220306413	rs4674398	G	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	220308581	rs10932805	A	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	220315970	rs10932806	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:69,58:0.46:127
chr2	220316579	rs4674399	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	220330642	.	TGTGCGCGC	T	1697.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=6.493;MLEAC=1;MLEAF=0.500;MQ=61.67;MQRankSum=3.638;QD=20.70;ReadPosRankSum=-0.579;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:38,44:0.54:82
chr2	220330644	.	TGCGCGCGTGTGC	T	2979	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=23;MQ=61.66;NF=18;NR=13;PP=2979;QD=20;SC=CGTGTGTGTGTGCGCGCGTGT;SbPval=0.23;Source=Platypus;TC=58;TCF=39;TCR=19;TR=31;WE=220330669;WS=220330634;set=Platypus	GT:AD:AF:DP	1/0:27,31:0.53:58
chr2	220330646	rs1976618	C	T	1306.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr2	220330657	rs68012340	GTGCA	G	1690.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=6.295;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=3.721;QD=19.66;ReadPosRankSum=-0.316;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:41,45:0.52:86
chr2	220330661	rs1976617	A	G	1421.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr2	220330724	rs1567488	C	T	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:91,98:0.52:189
chr2	220330804	rs1567487	T	C	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:107,119:0.53:226
chr2	220333950	rs10167209	T	C	6985.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr2	220337196	rs1039897	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	220341935	rs201853159	A	AG	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	220341937	.	G	GGCGGGGCCTGGTACAGCGGC	2973	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=3;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=6;NR=2;PP=2973;QD=20;SC=AGGAGATGAGGCCCTGGCCCC;SbPval=0.88;Source=Platypus;TC=10;TCF=6;TCR=4;TR=8;WE=220341946;WS=220341927;set=Platypus	GT:AD:AF:DP	1/1:2,8:0.80:10
chr2	220341938	.	C	T	167	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=6;NR=2;PP=167;QD=25.2214015684;SC=GGAGATGAGGCCCTGGCCCCA;SbPval=0.35;Source=Platypus;TC=13;TCF=11;TCR=2;TR=8;WE=220341946;WS=220341927;set=Platypus	GT:AD:AF:DP	1/1:5,8:0.62:13
chr2	220341938	.	C	CGGGGCCTGGTACAGCGGCT	767.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	220342650	rs200758666	G	A	5323.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:256,258:0.50:514
chr2	220346596	rs3731906	C	T	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	220353104	rs875097	A	G	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	220356806	rs907146	C	T	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	220361265	rs2385541	A	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	220362899	rs2029251	C	G	7082.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr2	220366953	rs2385539	G	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	220371035	rs1046474	C	G	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:106,109:0.51:215
chr2	220371181	rs10932808	T	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	220379560	rs3731909	C	G	11209.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr2	220380125	rs1872858	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	220397811	rs6731344	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	220399951	rs2276643	A	G	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=0.283;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:39,41:0.51:80
chr2	220400061	rs138860330	GT	G	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.384;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-1.986;QD=8.29;ReadPosRankSum=-1.509;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr2	220400064	rs60623120	T	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.254;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-1.585;QD=16.46;ReadPosRankSum=-1.958;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	220401663	rs72969461	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	220401732	rs3770237	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chr2	220401751	rs2385538	G	A	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	220402624	rs11689270	G	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	220402665	rs6436153	C	A	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=20.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.739;SOR=3.196;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr2	220404381	rs1976616	A	G	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	220404648	rs1043833	C	T	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	220404726	rs1043832	G	A	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	220405230	rs6436154	G	A	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	220405321	rs6436155	T	C	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	220406722	rs3731912	T	C	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:133,89:0.40:222
chr2	220406944	rs7581251	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.43;SOR=2.208;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	220407918	rs10932810	G	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	220409701	rs10932811	C	T	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	220412256	rs8179770	T	C	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	220413661	rs12996466	C	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	220414016	rs6436156	C	T	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	220414019	rs13023533	T	C	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	220415595	rs146790993	GGA	G	4341.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	220415646	rs1043582	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	220415752	rs6745782	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	220416164	rs6761575	T	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	220416570	rs4672931	C	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	220416591	rs4672932	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	220416803	rs4672933	A	T	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	220416942	rs34490902	G	C	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	220417228	rs60549465	G	T	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	220417266	rs59332477	C	T	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	220419236	rs10932813	T	C	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	220419339	rs10932814	T	C	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	220420785	rs3087971	G	A	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:91,71:0.44:162
chr2	220420956	rs10932816	A	G	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	220421417	rs1983210	C	G	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:134,91:0.40:225
chr2	220421456	rs1983211	C	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:73,67:0.48:140
chr2	220421479	rs13010015	A	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr2	220422029	rs55873563	G	A	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr2	220422400	rs2278200	C	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	220422583	rs145485683	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr2	220422774	rs2278201	A	G	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	220427347	rs10804275	G	T	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:130,110:0.46:240
chr2	220427395	rs3183099	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr2	220427428	rs55904205	GA	G	1573.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr2	220427996	rs11904583	T	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	220428381	rs2303543	A	T	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:150,168:0.53:318
chr2	220430203	rs1039898	C	T	9153.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr2	220431919	rs4674412	A	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	220432709	rs2292360	A	T	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:193,187:0.49:380
chr2	220435034	rs10180675	A	G	15535.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr2	220435375	rs1061399	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:116,64:0.36:180
chr2	220437081	rs35118453	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr2	220439678	rs12720063	C	T	5554.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:213,245:0.53:458
chr2	220462640	rs681747	G	T	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr2	220466199	rs620698	G	T	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	220466344	rs11405075	G	GT	616.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.053;MLEAC=2;MLEAF=1.000;MQ=60.61;MQRankSum=0.405;QD=15.04;ReadPosRankSum=0.454;SOR=0.139;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr2	220471116	rs633200	C	G	8697.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	220473929	rs35240018	T	G	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:123,116:0.49:239
chr2	220476443	rs627530	C	T	8011.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	220476645	rs581547	T	C	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	220479055	rs2305052	C	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	220479312	rs624773	T	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	220480639	rs640807	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	220480693	rs665845	G	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	220494118	rs597306	A	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr2	220495167	rs612078	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	220500321	rs2305055	C	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr2	220500412	rs55910611	G	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr2	220500423	rs589767	A	G	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	220500426	rs639214	A	G	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	220502137	rs621515	C	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	220502367	rs635311	A	C	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:144,151:0.51:295
chr2	220505265	rs684428	T	C	11401.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr2	220586231	rs9288551	C	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	220771223	rs4674470	C	T	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	220771290	rs4674471	G	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	220771310	rs4674472	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	220771378	rs4674473	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	222290902	rs2303901	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr2	222301357	rs3213844	T	C	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	222320427	rs2288627	G	A	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	222321225	rs6718949	C	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	222431521	rs35574019	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-2.567;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	222434898	rs11687492	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-1.003;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	222435035	rs200647532	TCC	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.55;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	222435048	rs2710504	A	G	94.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.70;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	222437136	rs11381414	A	AG	366.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	223065753	.	TAC	T	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.528;QD=1.65;ReadPosRankSum=-0.245;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:113,21:0.16:134
chr2	223065870	rs3731858	C	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:124,74:0.37:198
chr2	223161606	rs13405641	C	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	223161624	rs12694578	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr2	223161889	rs12623857	A	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	223162024	rs6754024	T	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	223386425	rs3820782	T	C	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr2	223386468	rs3739001	A	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr2	223386557	rs3739000	A	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:93,35:0.27:128
chr2	223386578	rs3738999	C	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-2.370;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:93,50:0.35:143
chr2	223423362	rs4674664	A	G	7490.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	223436428	rs3211018	T	C	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	223436607	rs7185	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	223489249	rs3214770	GT	G	882.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	223489293	rs2290031	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	223493435	rs2019357	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	223498189	.	GTT	ATC	32	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=24;MQ=56.03;NF=3;NR=0;PP=32;QD=28.4892916207;SC=ATCACCTGAGGTTGGGAGTTC;SbPval=1.0;Source=Platypus;TC=16;TCF=11;TCR=5;TR=3;WE=223498199;WS=223498179;set=Platypus	GT:AD:AF:DP	1/0:13,3:0.19:16
chr2	223520905	rs2166652	G	C	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	223520978	rs2044537	A	G	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	223780921	rs12623448	G	A	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	223781017	rs60362808	AT	A	755.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	223785504	rs6739824	T	C	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	223785740	rs6756323	A	G	7963.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr2	223785846	rs6728234	G	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	223787559	rs11891410	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	223787691	rs10932978	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	223793471	rs1550419	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	223793480	rs1550420	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.44;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	223799207	rs935030	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	223806189	rs35090606	C	CT,CTT	768.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-0.979;SOR=0.719;set=HC	GT:AD:AF:DP	1/2:5,32,11:0.67,0.23:48
chr2	223806194	rs1550426	C	T	2259.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.09;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	223917629	rs3795886	C	T	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	223917812	rs10201907	T	C	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	223917983	rs12621643	T	G	6416.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr2	223918080	rs10189762	C	G	5525.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	224462310	rs36043001	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr2	224629876	rs10644138	C	CCATCAT	1461.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr2	224640803	rs59118867	C	CAA	6470.73	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:186,172:0.48:358
chr2	224702305	rs3738961	G	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	224743373	rs571111	C	T	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:90,99:0.52:189
chr2	224743591	rs602675	C	T	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	224743652	rs547234	A	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	224744701	rs516849	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	224749578	rs60759568	T	TCTTC	362.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.03;MQRankSum=-1.107;QD=27.90;ReadPosRankSum=0.673;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr2	224758906	rs625150	C	T	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	224760494	rs597349	G	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	224763816	rs530065	C	T	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	224765894	rs604990	G	A	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	224770780	rs622896	C	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	224777094	rs541712	T	C	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	224777105	rs113054269	G	GTGAT	5236.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	224822043	rs3738960	C	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr2	224842150	rs7597833	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	224844919	rs729631	C	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	225376032	rs6743816	G	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr2	225378382	rs3830376	ATAAT	A	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	225630435	rs1045653	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr2	225633812	rs3754624	T	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	225665074	rs1560859	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	225688061	rs16866194	T	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr2	225719571	rs72305904	GCCAACCAA	G	1667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=3.276;QD=14.50;ReadPosRankSum=0.000;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:68,47:0.41:115
chr2	225719781	rs145044043	G	GACAC,GACACACACACACAC	1682.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.000;QD=39.13;ReadPosRankSum=0.612;SOR=0.784;set=HC	GT:AD:AF:DP	1/2:1,23,19:0.53,0.44:43
chr2	225750753	rs10197805	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr2	225750861	rs2304336	C	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=-1.287;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:35,24:0.41:59
chr2	225751103	rs2304335	C	T	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr2	225751256	rs71734299	TA	T	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.524;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=7.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.161;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr2	225751293	rs2304334	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	225781669	rs12987341	GT	AC	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	225796112	rs17271574	G	A	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	225796458	rs35061287	ATC	A	565.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	225811581	rs13021295	T	A	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	225811592	rs78257220	T	A	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=2.102;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:92,104:0.53:196
chr2	225848579	rs375205	T	C	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	225875158	rs590233	A	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	225907150	rs397052	C	T	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,62:0.49:127
chr2	226273490	rs2048935	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	226273689	rs2048936	T	C	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	226447735	rs3828256	C	T	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:84,72:0.46:156
chr2	226447844	rs6436570	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	226491770	rs3748993	A	C	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	227659583	rs3769647	G	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr2	227661043	rs1801123	T	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr2	227773466	rs3820928	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr2	227779191	rs3820927	C	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	227807202	rs6436641	G	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr2	227872182	rs2228557	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr2	227872995	rs2228555	T	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr2	227873028	rs13419076	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr2	227874957	rs4423583	C	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr2	227877037	rs10188770	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr2	227886773	rs3752895	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:50,66:0.57:116
chr2	227886925	rs3752896	C	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr2	227892498	rs7580776	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	227892619	rs2228556	C	T	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=2.194;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr2	227892720	rs2229813	C	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=0.550;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:40,37:0.48:77
chr2	227895125	rs1917127	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr2	227896652	rs13423714	C	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	227896886	rs2229812	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:87,93:0.52:180
chr2	227896976	rs10203363	C	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-1.090;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:44,30:0.41:74
chr2	227897076	rs10179756	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	227912331	rs2272200	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr2	227914625	rs2272202	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	227914655	rs2272203	C	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr2	227914975	rs2251223	T	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	227915832	rs1800517	G	A	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-0.986;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:56,60:0.52:116
chr2	227916039	rs2894626	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.951;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.083;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr2	227916907	.	CA	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.551;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	227917240	rs3769644	C	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	227917270	rs3769643	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	227922104	rs7567789	T	C	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	227922109	rs7567796	T	A	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.42;SOR=5.610;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	227922454	rs2141829	G	A	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	227922470	rs2141828	T	C	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr2	227925097	rs6436650	C	T	267.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	227927189	rs35717623	GTT	GT,G	555.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=34;set=Intersection	GT:AF:DP	1/1:0.94:32
chr2	227942519	.	A	G	27	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=27;QD=20.5904041824;SC=CTAAAATCTCAGAATTCACCA;SbPval=0.57;Source=Platypus;TC=4;TCF=3;TCR=1;TR=3;WE=227942527;WS=227942509;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr2	227947053	rs10187611	C	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	227954599	rs2229814	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr2	227966148	rs16823202	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr2	227966298	rs59443812	T	TA	839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.386;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:60,55:0.48:115
chr2	227967601	rs11274738	ACAATATTTCAGCAATAGGGAAAG	A	1914.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.297;QD=13.03;ReadPosRankSum=-0.606;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:93,54:0.37:147
chr2	227967830	rs10707643	GA	G	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;MQ=60.57;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr2	227968553	rs7602059	A	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	227973095	rs7600536	A	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	227973410	rs55741079	C	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr2	227973623	rs12475686	A	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=6.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.509;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:52,42:0.45:94
chr2	227974113	rs6436654	A	G	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:143,122:0.46:265
chr2	227974191	rs6436655	A	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:75,56:0.43:131
chr2	228102752	rs1882435	C	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr2	228102892	.	T	TA	31	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=0.9998;HP=13;HapScore=2;MGOF=15;MMLQ=23;MQ=60.0;NF=1;NR=1;PP=31;QD=18.0;SC=AACATTAACCTAAAAAAAAAA;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=228102900;WS=228102882;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	228104760	rs7579991	C	T	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	228109626	rs113428834	T	TG	1636.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=34.82;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	228109784	rs6750210	C	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	228111435	rs10178458	T	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	228111600	rs10168566	G	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=1.576;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	228111604	rs10168567	G	T	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	228111651	rs10192026	A	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	228112186	rs4321358	A	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	228113175	rs6436669	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	228118403	rs12621551	T	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	228118949	rs7559693	C	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr2	228118975	rs11412904	G	GTT	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=0.812;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	228121101	rs55703767	G	T	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,50:0.49:103
chr2	228121147	rs10933172	T	G	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=2.736;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:46,46:0.50:92
chr2	228128540	rs10205042	C	T	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-1.065;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:53,62:0.54:115
chr2	228135426	rs73993878	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	228142038	.	GAAA	G,GA	492.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.54;QD=28.98;SOR=2.179;set=HC	GT:AD:AF:DP	1/2:0,9,8:0.53,0.47:17
chr2	228144706	rs6729152	G	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	228145543	rs6436671	C	T	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	228146991	rs111486503	AATATATAT	AATAT,A	866.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/1:0.96:23
chr2	228149107	rs6436672	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	228154095	rs7593281	C	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	228158418	rs7569636	T	C	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	228158648	rs7608999	G	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	228159063	rs6436675	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	228159641	rs4675163	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-1.691;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	228159660	rs202047534	GTT	G,GT	886.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.742;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.421;QD=17.05;ReadPosRankSum=0.774;SOR=0.307;set=HC	GT:AD:AF:DP	1/2:6,25,21:0.48,0.40:52
chr2	228194570	rs6706656	G	A	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	228194639	rs11384091	T	TA	410.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	228197368	rs4500938	A	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	228204929	rs4420693	C	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	228204982	rs4442987	C	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	228207625	rs6738078	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr2	228220288	rs56310237	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr2	228220528	rs12478005	T	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr2	228221725	rs74713223	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr2	228230945	rs76547437	G	A	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:121,106:0.47:227
chr2	228243905	rs7574414	G	A	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:59,146:0.71:205
chr2	228373404	rs11464376	A	AT	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr2	228399480	rs7588620	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	228416498	rs7598597	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	228416712	rs13426457	A	G	12462.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr2	228476253	rs2138402	C	G	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr2	228477819	rs11683530	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	228553070	rs73997321	G	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr2	228560800	rs11334205	GA	G	4254.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	228567111	rs71039629	AT	A	207.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.364;QD=9.89;ReadPosRankSum=-1.798;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr2	228736308	rs56258223	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr2	228736341	rs56333712	C	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:53,59:0.53:112
chr2	228758387	rs144569800	T	TAAAC	1050.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=0.484;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr2	228758554	rs1715828	A	T	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr2	228767618	rs2949014	T	C	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	228767631	rs2946931	G	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr2	228776996	rs3748862	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr2	228855866	rs16824283	G	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:99,123:0.55:222
chr2	228883029	rs3811515	A	C	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr2	228883721	rs3811514	T	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,74:0.50:148
chr2	228886413	rs11292511	TG	T	737.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr2	228973383	rs67714256	A	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr2	228973660	rs7561798	A	G	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:69,67:0.49:136
chr2	228973723	rs11374866	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.059;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr2	228992763	rs6719186	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	228992850	rs6734166	T	C	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr2	228996637	rs4479423	G	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-1.546;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	228996650	rs4353646	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr2	228996672	rs4585022	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr2	229034865	rs75675564	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	229035351	rs12618108	T	G	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.53;ReadPosRankSum=2.391;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:13,34:0.72:47
chr2	229035356	rs13408688	T	G	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.94;ReadPosRankSum=2.256;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,29:0.74:39
chr2	229035427	rs11685283	T	C	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr2	229035462	rs13420693	A	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	230092723	rs1362242	G	A	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	230096837	rs6743582	C	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	230135527	rs1227013	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	230135711	rs67686611	G	GC	2402.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	230231889	rs2302769	A	T	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr2	230271780	rs7562609	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	230282624	rs6760224	G	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	230341979	rs146727100	AC	A	1332.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr2	230411518	rs141324508	T	TAGATAGAC	342.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr2	230453214	rs11458391	G	GA	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=0.102;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr2	230655733	rs722268	C	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	230666898	rs10432554	A	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	230668968	rs4972915	G	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	230695958	rs76532016	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr2	230705516	rs11373804	T	TA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.456;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr2	230744570	rs479492	C	T	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	230875311	rs11675143	G	A	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	230914766	rs6748654	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	230923648	rs9750739	C	G	186.56	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr2	231036297	rs11690519	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr2	231037833	rs10498244	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	231042276	rs1135791	A	G	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:194,167:0.46:361
chr2	231050569	rs2114591	G	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr2	231050715	rs3948464	A	G	7241.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr2	231072709	rs1365776	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:77,47:0.38:124
chr2	231076032	rs3769837	G	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	231076289	rs3820974	T	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.761;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:69,52:0.43:121
chr2	231077112	rs28930679	G	A	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=1.081;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:57,53:0.48:110
chr2	231077154	rs41309096	G	A	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.721;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:67,60:0.47:127
chr2	231077725	rs1129411	A	G	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	231077868	rs7601176	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	231077911	rs7601190	A	C	186.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	231081405	rs7580912	T	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	231103185	rs2278197	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	231106244	rs2288328	G	C	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	231110582	rs28445040	C	T	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.454;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:92,65:0.41:157
chr2	231110737	rs3813464	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr2	231115603	rs9989792	T	C	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=1.084;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:66,67:0.50:133
chr2	231115630	rs9989835	A	T	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=1.820;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:77,64:0.45:141
chr2	231118186	rs3769840	G	A	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:102,71:0.41:173
chr2	231120255	rs55829350	CG	C	191.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	231134078	rs66745970	AGCGTG	A	657.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr2	231149108	rs4972946	G	A	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	231175549	rs200258126	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.800;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=39.47;MQRankSum=1.389;QD=13.84;ReadPosRankSum=-1.321;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	231175763	rs78116662	G	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr2	231176040	rs139570354	G	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=45.56;MQRankSum=0.340;QD=12.11;ReadPosRankSum=1.131;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr2	231177200	rs3086614	CTT	C	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	231223975	rs11678791	C	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr2	231254710	.	A	C	1278.77	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr2	231254919	rs17332171	C	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr2	231256812	rs7559665	A	G	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:90,74:0.45:164
chr2	231258218	rs7563909	A	T	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-1.957;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr2	231258309	rs72495174	T	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-1.086;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr2	231258322	rs72996292	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.205;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr2	231261620	rs6732940	G	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:86,77:0.47:163
chr2	231266526	rs149348058	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-2.450;QD=5.85;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	231282534	rs35969967	C	CT	123.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	231309139	rs55637456	A	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr2	231327291	rs1649863	A	G	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr2	231327430	rs17333468	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	231328696	rs2306274	C	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr2	231328720	rs2306275	C	T	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=7.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.65;ReadPosRankSum=0.211;SOR=1.435;set=HC	GT:AD:AF:DP	0/1:48,60:0.56:108
chr2	231328728	rs2306276	C	T	2432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=4.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.15;ReadPosRankSum=0.020;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:51,64:0.56:115
chr2	231330899	.	C	CAAAAAA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.30;ReadPosRankSum=0.992;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	231331694	rs1678159	A	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.99;ReadPosRankSum=-0.143;SOR=0.053;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	231331701	rs3214547	A	AG	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=-0.645;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	231331706	rs2303609	C	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=-0.378;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	231331799	rs1649869	T	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-1.746;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:52,30:0.37:82
chr2	231331896	rs1050224	G	A	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-0.075;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:86,52:0.38:138
chr2	231333763	rs12724	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	231333834	rs1649873	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	231333852	rs1649874	A	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr2	231333890	rs1649875	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	231334010	rs1649877	CA	TG	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.076;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.98;ReadPosRankSum=-0.921;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr2	231334216	rs1051579	T	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr2	231334299	rs1051580	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	231334421	rs1051581	A	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	231334504	rs139756804	AAAAG	A	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr2	231334679	rs1678162	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr2	231337960	rs1615190	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr2	231338211	rs1678169	T	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr2	231359098	rs836230	T	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr2	231405572	rs4973329	T	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-0.080;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:40,29:0.42:69
chr2	231406194	rs866270	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	231406680	rs836237	T	C	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:57,74:0.56:131
chr2	231407519	rs6717269	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr2	231738168	rs2289235	G	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	231738263	rs2289234	C	T	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	231738269	rs2289233	G	A	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	231738318	rs3816150	T	C	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	231740276	rs2289231	A	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	231860838	rs2271369	C	T	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.683;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.75;ReadPosRankSum=0.347;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	231860848	rs6722863	A	G	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.298;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=8.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.04;ReadPosRankSum=0.382;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr2	231860906	rs201354895	C	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr2	231864289	rs2136474	A	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	231864529	rs6436986	A	G	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	231864600	rs7573039	T	C	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	231864646	rs11684067	A	G	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	231865018	rs13406394	A	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	231865047	rs3817173	T	C	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	231865090	rs2271376	T	C	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	231865269	rs2271375	G	T	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	231867220	rs10933364	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	231902471	rs190787545	C	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-0.328;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	231902926	rs116101137	C	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.448;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	232035249	.	T	C	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.900;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:76,69:0.48:145
chr2	232079409	rs79587894	C	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr2	232087474	rs1626450	AT	GA	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	232121171	.	C	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.416;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.151;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:63,47:0.43:110
chr2	232196472	rs1729082	T	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr2	232196564	rs1669083	C	T	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:114,100:0.47:214
chr2	232196597	rs1669084	G	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:110,93:0.46:203
chr2	232225535	rs35889244	C	CG	6056.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	232260537	rs4972989	T	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	232263127	rs2290130	G	A	10312.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr2	232378231	rs6750795	T	C	7145.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr2	232389744	rs3752762	A	G	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr2	232390151	rs3752763	A	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr2	232457880	rs74460533	T	C	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:142,139:0.49:281
chr2	232458443	rs10933378	T	C	7300.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	232790053	rs5268	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr2	232888856	rs896990	T	G	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	233028070	rs3116181	A	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	233243660	rs2014448	T	C	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	233244586	rs2853374	C	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	233244930	rs1048988	G	C	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.42;QD=30.72;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	233244930	.	GCATGGGA	CCATGGGA,CCATGGGG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.25;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=11;MQ=49.75;NF=134,30;NR=95,9;PP=2962,485;QD=20;SC=TACATGTTTCGCATGGGAACC;SbPval=0.56;Source=Platypus;TC=231;TCF=134;TCR=97;TR=229,39;WE=233244945;WS=233244920;set=Platypus	GT:AF:DP	0/1:0.99:231
chr2	233244937	rs1048989	A	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=22.153;MLEAC=1;MLEAF=0.500;MQ=53.79;MQRankSum=-2.832;QD=2.64;ReadPosRankSum=-4.368;SOR=1.991;set=HC	GT:AD:AF:DP	0/1:199,49:0.20:248
chr2	233245090	rs2260307	A	G	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:133,63:0.32:196
chr2	233245141	rs2260309	T	C	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:214,105:0.33:319
chr2	233245210	rs13034594	C	T	4767.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:369,237:0.39:606
chr2	233271697	rs369374441	TAC	T	6621.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.93;MQRankSum=-0.906;QD=30.51;ReadPosRankSum=-0.873;SOR=0.503;set=HC	GT:AD:AF:DP	1/1:7,210:0.97:217
chr2	233272162	rs2678517	G	A	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	233272925	rs2678518	A	G	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	233273107	.	A	G	836	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=3;HapScore=1;MGOF=15;MMLQ=23;MQ=42.22;NF=17;NR=28;PP=836;QD=19.3504713899;SC=CTGGCGAAGCACCAGGTGATG;SbPval=0.17;Source=Platypus;TC=60;TCF=17;TCR=43;TR=45;WE=233273115;WS=233273097;set=Platypus	GT:AD:AF:DP	1/1:15,45:0.75:60
chr2	233273207	rs2945421	G	A	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.46;QD=30.58;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	233273244	rs17416141	C	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.40;MQRankSum=-0.967;QD=8.31;ReadPosRankSum=1.973;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	233273291	rs186417264	C	T	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.93;QD=29.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	233274145	rs2090543	G	C	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	233274169	rs2091555	T	C	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	233310492	.	G	A	142.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	233323177	rs2003780	T	C	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	233346662	rs909432	A	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	233347919	rs6750085	C	G	6199.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	233349588	rs1529874	G	A	9804.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr2	233350000	rs2573246	C	G	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	233350938	rs144928688	G	T	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr2	233386229	rs2853444	T	C	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,97:0.53:184
chr2	233387635	rs733603	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr2	233388311	rs733602	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr2	233388813	rs2741299	T	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr2	233389167	rs58091792	G	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	233389918	rs2853447	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:59,56:0.49:115
chr2	233390937	rs2245601	A	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr2	233391463	rs2278478	A	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr2	233391965	rs4973537	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.263;SOR=1.807;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr2	233392020	rs113930536	A	AAAAG	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-3.397;QD=1.19;ReadPosRankSum=-2.190;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr2	233400074	rs2767	A	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr2	233404294	rs11674608	C	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr2	233404334	rs140146282	C	CGGGCTGGCT	707.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr2	233404590	rs12996322	G	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr2	233404771	rs148468628	G	A	5979.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:206,272:0.57:478
chr2	233408190	rs34697564	A	AC	1299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=5.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=1.330;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:73,62:0.46:135
chr2	233408220	rs10714586	AG	A	5218.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	233408239	rs2573206	C	G	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:116,81:0.41:197
chr2	233408283	rs13018423	C	T	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:186,148:0.44:334
chr2	233414341	rs4973540	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr2	233415978	rs11899983	T	C	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	233421284	rs3830645	CT	C	4428.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	233428927	rs1656397	G	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	233429144	rs111584120	GTATTTTATTT	G,GTATTT	1832.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=89;set=Intersection	GT:AF:DP	1/2:0.77,0.23:44
chr2	233429185	rs1656396	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr2	233429196	rs1729255	C	G	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr2	233470843	rs7571133	G	A	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=26.42;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	233470900	rs55750809	TC	T	2221.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:89,82:0.48:171
chr2	233470931	rs10171498	C	G	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:87,84:0.49:171
chr2	233498506	rs112941683	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	233536926	rs11684420	T	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	233537125	rs11550699	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	233641010	rs41266951	A	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	233641083	rs737027	G	C	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	233652137	rs3217559	T	TG	739.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	233660704	rs2305139	T	G	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr2	233708806	rs3816334	A	G	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	233710713	rs4973054	G	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	233711987	rs12328140	G	A	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	233712049	rs2305137	G	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	233712226	rs10555297	CACA	C	3849.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	233712248	rs12328151	G	A	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	233721455	rs1947105	G	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	233723182	rs1284	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	233740055	rs35523521	AAGAG	A	5778.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	233740227	rs778338	A	G	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	233744130	rs67252740	GCCC	G	1684.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	233750074	rs2292725	C	T	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	233750118	rs2292726	G	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	233752639	rs2250665	A	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	233757697	rs895432	A	G	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	233757860	rs6721903	T	C	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	233785015	rs778354	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	233834975	rs4973588	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr2	233878008	rs138370891	C	T	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:75,81:0.52:156
chr2	233880271	rs60652209	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr2	233899126	rs2233391	C	A	10954.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:2,394:0.99:396
chr2	233925491	rs4246649	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	233997595	.	AT	A	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=1.161;QD=6.10;ReadPosRankSum=-0.377;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr2	233998646	rs6738961	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	234054515	rs147786898	G	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	234054989	rs36180605	T	G	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr2	234055004	rs36189208	T	C	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	234066969	rs36127492	C	G	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	234067089	rs36165346	A	G	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	234072626	rs141642539	T	C	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	234079551	.	CAA	C	274.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.555;QD=18.32;ReadPosRankSum=0.761;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr2	234091158	rs4571051	T	C	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.74;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	234091159	rs11693000	G	A	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-1.467;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:88,80:0.48:168
chr2	234093035	rs6740918	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:80,75:0.48:155
chr2	234104029	rs6706611	G	A	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=1.029;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:77,86:0.53:163
chr2	234107070	rs7569827	G	A	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	234112649	rs7609436	T	C	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	234113057	rs7346	G	A	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:147,122:0.45:269
chr2	234113301	rs9247	C	T	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.215;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.993;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.044;QD=9.24;ReadPosRankSum=-0.027;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:107,100:0.48:207
chr2	234113421	rs70958391	C	CGTATGTGT	473.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	234160345	rs2289477	T	G	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	234160669	rs10199278	C	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	234173503	rs12994997	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	234181593	rs2289475	G	C	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	234182240	rs2289472	C	T	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	234183368	rs2241880	A	G	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	234183468	rs2241879	G	A	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	234184417	rs3792109	G	A	8082.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	234197717	rs4663136	C	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	234227523	rs2304777	A	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	234227693	rs2304776	C	T	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	234235749	rs2304774	G	C	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	234238254	rs745498	T	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	234247627	rs2241874	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	234255547	rs1046974	G	A	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	234294805	.	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.292;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	234368715	.	TA	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.880;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr2	234372767	rs2924811	T	C	1278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.031;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:97,71:0.42:168
chr2	234372985	rs2242098	A	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr2	234375944	rs2305540	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	234386018	rs2971862	A	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr2	234386134	rs2971863	A	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:44,57:0.56:101
chr2	234394111	rs62192762	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr2	234394329	rs1470864	C	A	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:169,130:0.43:299
chr2	234394487	rs1048603	G	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:128,124:0.49:252
chr2	234394569	rs2603547	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr2	234396542	rs2167885	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr2	234397006	rs145883223	AT	A	492.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr2	234398195	rs112451786	G	GA	134.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr2	234405374	rs2602386	A	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	234407160	rs2603546	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	234421283	rs143258246	A	AATATTATTTTTCTTAGT	912.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	234429739	rs141501074	T	TTTC	1341.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr2	234432017	rs838543	A	G	2597.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:161,126:0.44:287
chr2	234433124	rs838549	G	A	4629.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:207,216:0.51:423
chr2	234438246	rs56828432	C	CT	1309.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr2	234438354	rs12692193	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	234442437	rs11332355	CA	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-1.398;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr2	234449316	rs2167884	G	A	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:90,83:0.48:173
chr2	234449462	rs1545525	T	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr2	234450822	rs1901812	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	234457900	rs3965793	T	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr2	234469664	rs6753062	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=0.627;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	234526871	rs1042597	C	G	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:107,86:0.45:193
chr2	234527118	rs1042605	A	G	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:235,205:0.47:440
chr2	234545039	rs149250772	A	AT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-1.352;QD=12.46;ReadPosRankSum=0.522;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	234545861	rs17854828	C	T	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:290,226:0.44:516
chr2	234580453	rs3832043	AT	A	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr2	234590970	rs17868323	T	G	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.585;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.016;QD=17.88;ReadPosRankSum=-0.376;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr2	234590974	rs17863778	CG	AA	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.277;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.124;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.016;QD=17.97;ReadPosRankSum=0.269;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr2	234591339	rs17864686	G	A	4695.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:211,221:0.51:432
chr2	234599234	rs144486213	GA	G	1450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.889;QD=7.25;ReadPosRankSum=0.040;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:100,100:0.50:200
chr2	234627937	rs2011404	T	C	7933.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	234688036	rs6431631	C	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	234702459	rs1500481	T	C	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	234703136	rs6431634	T	C	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	234704150	rs2885297	T	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	234704318	rs2361503	A	G	20269.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	1/1:0,744:1.00:744
chr2	234704495	rs11563248	T	G	7129.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	234704690	rs759173	T	C	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	234704746	rs759172	G	C	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	234707341	rs1500479	T	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr2	234708428	rs13013882	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr2	234708570	rs11563069	G	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr2	234708629	rs13018934	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr2	234708720	rs2041652	T	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	234713812	rs2041651	G	T	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr2	234717669	rs10803663	A	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr2	234720734	rs988344	A	C	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr2	234725502	rs726016	T	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr2	234727250	rs719419	T	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr2	234727986	rs6754859	C	T	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr2	234728078	rs1500480	T	C	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=1.873;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:71,54:0.43:125
chr2	234732311	rs17868361	G	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-1.630;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:30,47:0.61:77
chr2	234732317	rs11676792	A	G	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.83;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	234738175	rs502059	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	234738472	rs582432	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr2	234740758	rs213547	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr2	234740797	rs76276350	C	CAAAA	1110.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr2	234740798	rs3064782	T	A	1119.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=1.908;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:65,32:0.33:97
chr2	234740985	rs474242	G	A	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-0.925;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:52,31:0.37:83
chr2	234740985	.	GGC	AGG	901	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=4;HapScore=1;MGOF=12;MMLQ=28;MQ=60.0;NF=11;NR=13;PP=901;QD=39.7694947859;SC=AGTCCACCCCGGCACTCGGGG;SbPval=0.62;Source=Platypus;TC=75;TCF=35;TCR=40;TR=24;WE=234740999;WS=234740975;set=Platypus	GT:AD:AF:DP	1/0:51,24:0.32:75
chr2	234740987	rs658482	C	G	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=-1.183;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:49,30:0.38:79
chr2	234741022	rs122856	T	C	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr2	234741028	rs5839496	A	AG	586.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr2	234741443	rs213548	G	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	234749151	rs213555	C	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr2	234750542	rs3732215	G	C	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:98,98:0.50:196
chr2	234750831	rs3806589	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr2	234752638	rs7583713	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	234753008	rs169925	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	234754273	rs2302156	T	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr2	234754506	rs2302155	G	A	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:108,109:0.50:217
chr2	234756240	rs2286431	G	A	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr2	234761225	rs2286430	C	T	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:129,126:0.49:255
chr2	234761355	rs554699	G	A	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:113,88:0.44:201
chr2	234762480	rs626110	A	T	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.122;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-2.278;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:92,61:0.40:153
chr2	234763226	rs503913	C	T	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:141,115:0.45:256
chr2	234839404	rs4663987	C	T	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:98,68:0.41:166
chr2	234846198	rs1019103	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	234847573	rs9646720	A	G	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.896;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:67,50:0.43:117
chr2	234847823	rs2302153	A	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr2	234854550	rs11562975	G	C	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-0.051;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:79,53:0.40:132
chr2	234856421	rs10170647	T	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr2	234869358	rs11563212	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr2	234873123	rs28953468	G	A	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	234888643	rs6745987	T	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	234892127	rs4663995	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	234905078	rs11563208	C	T	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	234916831	rs6734618	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.48;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	234916831	.	ATAA	GTAA,GTAG	317	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=12,3;NR=19,4;PP=317,34;QD=11.3474584693;SC=AGTAGTTGTGATAATAAAAGA;SbPval=0.62;Source=Platypus;TC=32;TCF=13;TCR=19;TR=31,7;WE=234916842;WS=234916821;set=Platypus	GT:AF:DP	0/1:0.97:32
chr2	234916834	rs28902234	A	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-2.337;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr2	234926008	rs28902237	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr2	234959642	rs34347825	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:69,59:0.46:128
chr2	234967410	rs17865708	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	234967539	rs593668	T	A	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:72,59:0.45:131
chr2	234967569	rs76941072	C	T	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr2	234969154	rs17869099	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr2	235950187	rs1469375	T	C	5393.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:226,263:0.54:489
chr2	235951819	rs3795962	A	G	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr2	235962513	rs10929083	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	236403305	.	GCGGCTC	G	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.171;QD=15.24;ReadPosRankSum=1.594;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	236403607	rs3738998	C	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	236433161	rs62191529	G	A	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:74,92:0.55:166
chr2	236433331	rs11689907	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr2	236433390	rs10207027	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	236578649	rs10201486	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	236617736	rs3754669	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr2	236682914	rs2696411	T	C	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	236685532	rs72981176	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	236685731	rs113739109	G	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	236685762	rs138493201	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	236691858	rs1878153	T	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	236691982	rs1878154	A	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	236692238	rs12466588	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	236706612	rs140030205	A	AT	2845.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:7,135:0.95:142
chr2	236708166	rs2292708	C	T	14044.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr2	236716075	rs41269843	C	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr2	236761396	rs13006916	C	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	236817336	rs57795387	CT	C	909.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.964;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:80,80:0.50:160
chr2	236923361	rs35361765	C	CT	1658.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:4,76:0.95:80
chr2	236957822	rs2034648	G	A	8865.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr2	237029104	rs2278884	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-1.203;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	237146290	rs11680052	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.60;ReadPosRankSum=-0.489;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	237146643	rs72060634	TGTG	T	301.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	237149941	rs6756597	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr2	237150166	rs2015983	A	C	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	237150311	rs6431443	T	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	237247036	rs111440161	G	GA	548.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr2	237252454	rs72978647	C	A	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-1.838;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:51,49:0.49:100
chr2	237255303	rs62192371	A	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr2	237374309	rs35432941	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:76,48:0.39:124
chr2	237395443	rs1986381	C	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	237396935	rs6751722	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr2	237489904	rs1045879	C	T	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:122,104:0.46:226
chr2	237995735	rs138951874	G	GTTGTT	1911.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr2	238005370	rs11333953	GT	G	179.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr2	238166147	rs4377288	G	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-1.136;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr2	238233410	rs4663722	C	G	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=-0.017;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:124,75:0.38:199
chr2	238243292	rs1131296	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	238243464	rs2270669	C	G	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.689;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr2	238244963	rs6728818	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:58,69:0.54:127
chr2	238249630	rs4433949	C	T	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:120,112:0.48:232
chr2	238258814	rs3790993	C	G	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:135,142:0.51:277
chr2	238259675	rs3790995	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr2	238261112	rs4663726	GC	AA	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;JOINED;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr2	238266248	rs7577192	G	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	238266633	rs4663730	G	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	238267058	rs4663731	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr2	238269871	rs2645769	C	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr2	238270644	rs72986142	C	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr2	238271786	rs11287247	GC	G	879.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	238271882	rs11385011	T	TA	1129.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr2	238274828	rs2645770	C	A	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	238277573	rs2645774	C	A	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:185,167:0.47:352
chr2	238277795	rs2646260	A	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,46:0.39:118
chr2	238283605	rs12622093	G	A	4510.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:256,227:0.47:483
chr2	238303906	rs2645778	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	238305211	rs1553032	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	238419543	rs71887544	CGT	C	1112.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr2	238419611	rs2292879	A	G	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=4.177;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.476;QD=10.19;ReadPosRankSum=-0.019;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:66,62:0.48:128
chr2	238427142	rs3751110	T	C	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-1.781;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:73,81:0.53:154
chr2	238427194	rs3751109	T	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:69,72:0.51:141
chr2	238427251	rs3751107	G	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr2	238428418	rs3751106	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr2	238428454	rs75559690	T	C	2893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.42;ReadPosRankSum=0.688;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:72,77:0.52:149
chr2	238428459	rs3751105	G	A	2957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=0.089;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:76,81:0.52:157
chr2	238434434	rs11883500	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr2	238443226	rs2292884	A	G	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.120;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:31,53:0.63:84
chr2	238443407	rs2292885	G	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	238443483	rs74970394	C	T	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	238449107	rs2271809	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	238451167	rs28418886	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,57:0.46:125
chr2	238454152	rs139727526	ACC	A	1474.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr2	238454206	rs114851412	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	238457684	rs10173589	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr2	238483164	rs6766	T	C	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:146,154:0.51:300
chr2	238483283	rs147504247	GCCC	G	1827.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr2	238483475	rs2280288	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	238483654	rs72990107	G	A	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr2	238483671	rs59945834	G	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr2	238483729	rs2280289	A	G	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:76,86:0.53:162
chr2	238484068	rs41270747	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	238484222	rs10202062	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr2	238485251	rs72990117	G	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr2	238494681	rs34052613	G	A	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:139,127:0.48:266
chr2	238499727	rs6755617	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=2.013;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	238499863	rs146534321	A	AAATTCTTCAGGAGACTCT	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	238499866	rs114742872	C	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	238499866	.	CCATGAAAC	TCATGAAAC,TCATGAAAT	84	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.56;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=5;MMLQ=23;MQ=60.0;NF=4,2;NR=7,4;PP=84,56;QD=10.7973829588;SC=TCTTCCCAAGCCATGAAACTT;SbPval=0.6;Source=Platypus;TC=11;TCF=4;TCR=7;TR=11,6;WE=238499882;WS=238499853;set=Platypus	GT:AF:DP	0/1:1.00:11
chr2	238499874	rs2292870	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=2.054;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	238499997	rs6745883	TA	CG	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.480;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr2	238500046	rs6742960	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.478;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	238500487	rs139154033	T	TA	1835.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr2	238500642	rs10084167	A	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-0.426;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	238503559	rs2325806	C	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr2	238536255	rs10170083	C	G	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.37;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	238536392	rs10184871	T	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	238688244	rs1151798	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	238894953	rs12473327	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.75;ReadPosRankSum=-0.000;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	238896494	rs59213280	C	CA	74.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.291;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.75;ReadPosRankSum=0.284;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	238896495	rs72981250	T	A	32.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.083;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.52;ReadPosRankSum=-0.001;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	238903310	rs10203101	C	T	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	238912120	rs10929262	A	C	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:82,85:0.51:167
chr2	238939370	rs11679080	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr2	238969964	rs2250185	T	C	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr2	238972827	rs821480	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	238990388	rs3210400	G	A	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:107,126:0.54:233
chr2	238991796	rs2278742	C	T	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	239002480	rs72316729	CTTG	C	2721.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:73,72:0.50:145
chr2	239003260	rs41270749	G	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	239006879	rs12993309	C	T	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr2	239007755	rs68159827	CATT	C	910.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr2	239007806	rs1054640	A	G	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	239007850	rs1054641	T	A	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.891;QD=8.81;ReadPosRankSum=1.250;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:90,77:0.46:167
chr2	239007991	rs15787	T	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr2	239008936	rs6431579	A	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	239009336	rs61744770	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	239009384	rs62196013	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	239010455	rs5839683	GGAA	G	217.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	239010577	rs1562333	G	C	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-0.169;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:71,44:0.38:115
chr2	239010719	rs36066915	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	239010796	rs10186290	G	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	239016539	rs935415	C	G	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:205,153:0.43:358
chr2	239025523	rs11903074	T	C	3994.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	239025630	rs11904159	T	C	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:67,91:0.58:158
chr2	239025645	rs11897736	C	T	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:64,79:0.55:143
chr2	239033901	rs10172440	T	C	7212.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:385,355:0.48:740
chr2	239034043	rs10170048	A	C	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:145,119:0.45:264
chr2	239036270	rs13382446	C	T	4854.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:270,228:0.46:498
chr2	239036416	rs12692214	T	C	8369.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.17;SOR=1.521;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	239036416	.	TAGCCAGC	CAGCCAGA,CAGCCAGC	1768	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=36,82;NR=57,143;PP=1315,1768;QD=14.7147083319;SC=CCGGGGCCCCTAGCCAGCCTC;SbPval=0.44;Source=Platypus;TC=225;TCF=82;TCR=143;TR=93,225;WE=239036431;WS=239036406;set=Platypus	GT:AF:DP	0/1:0.41:225
chr2	239036423	rs62197371	C	A	2065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=0.477;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:118,98:0.45:216
chr2	239037273	rs72989009	C	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr2	239039057	rs13033248	A	G	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr2	239039075	rs13006204	G	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr2	239039637	rs4663845	T	C	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr2	239039841	rs10172220	A	G	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:98,94:0.49:192
chr2	239039896	rs10182906	G	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:141,141:0.50:282
chr2	239040187	rs12692215	T	C	2496.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:93,110:0.54:203
chr2	239049540	rs2241985	G	A	4333.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:195,203:0.51:398
chr2	239050033	rs12692216	C	T	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,73:0.48:151
chr2	239051550	rs935411	T	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	239051639	rs748218	T	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr2	239053436	rs12623661	G	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr2	239053685	rs13013945	A	C	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr2	239054504	rs11674140	G	T	2272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.005;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:79,109:0.58:188
chr2	239056746	rs11674655	T	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	239059484	rs7605194	T	C	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:98,77:0.44:175
chr2	239073046	rs6760421	C	T	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:131,119:0.48:250
chr2	239075812	rs3795905	C	T	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:71,90:0.56:161
chr2	239075935	rs3820817	A	G	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:103,110:0.52:213
chr2	239079542	rs2278737	A	G	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:74,70:0.49:144
chr2	239082166	rs3832064	G	GC	3957.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=35.34;SOR=1.315;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	239092195	rs142019067	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr2	239092474	rs2305173	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr2	239092618	rs3217566	C	CCACA	1988.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr2	239093788	rs6431588	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.91;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	239102856	rs3795903	A	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr2	239103574	rs35393292	G	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:97,92:0.49:189
chr2	239103603	rs7558210	C	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,64:0.46:140
chr2	239112344	rs113428548	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-1.150;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	239133641	rs72992741	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	239133980	rs7558525	C	T	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	239134056	rs7572285	A	G	10996.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	239134063	rs7584376	G	T	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	239134138	rs7572392	A	C	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	239136143	rs3795902	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	239139883	rs13425452	G	C	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	239140403	rs35825433	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	239140426	.	A	AC	1380.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=44.54;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	239140434	rs111384196	C	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=39.97;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	239140728	rs11689033	A	G	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	239148255	.	C	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=28.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=0.709;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr2	239148970	rs56294817	C	A	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr2	239148996	rs140615710	CCCGT	C	4803.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr2	239155053	rs934945	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=0.388;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr2	239160464	.	C	T	441.77	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr2	239229372	rs13398676	C	A	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:106,81:0.43:187
chr2	239229440	rs112673616	A	G	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.070;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:70,50:0.42:120
chr2	239234396	rs75651012	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	239242719	rs5839695	G	GT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.791;QD=8.77;ReadPosRankSum=-0.995;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	239253266	rs56304316	C	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr2	239306268	rs3739070	A	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr2	239307245	rs571820	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	239342096	rs41264155	G	A	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	239344263	rs11885523	G	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	239344412	rs3191996	C	T	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,85:0.52:162
chr2	239344663	rs11904390	T	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr2	239976597	rs72990461	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr2	239976697	rs113824469	T	TTATTA	504.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	239990003	rs62189533	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	240003870	rs1063639	G	A	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:84,101:0.55:185
chr2	240029736	rs7585225	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.049;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	240055901	rs2278778	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	240066417	rs2290087	A	G	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	240066526	rs2290088	T	C	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	240078587	rs5839723	GAC	G	1257.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr2	240083528	rs3791515	G	A	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:186,198:0.52:384
chr2	240083731	rs3828216	C	T	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:63,43:0.41:106
chr2	240085403	rs11124182	C	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	240085674	rs13010577	C	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.267;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	240111477	rs531993	A	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	240500173	rs10187580	T	C	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:73,68:0.48:141
chr2	240500413	rs6543554	A	G	7043.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	240500437	rs10180205	C	T	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:159,95:0.37:254
chr2	240504878	rs6719279	C	T	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	240701886	rs10189627	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	240721344	.	G	A	484.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	240721384	rs2898872	C	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr2	240834539	rs13419982	C	A	1452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-0.800;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:62,68:0.52:130
chr2	240900607	rs138479490	TG	T	2128.73	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:118,101:0.46:219
chr2	240909304	rs34036698	CAG	C	2082.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr2	240921463	rs4149551	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr2	240921817	rs77023828	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	240922822	rs958960	C	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	240923050	rs1530144	C	T	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	240923146	rs6716293	TC	CT	6184.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	240946766	rs13848	T	C	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	240954005	rs77816205	C	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	240954110	rs2289407	A	G	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:100,93:0.48:193
chr2	240958129	rs4149540	C	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr2	240961728	rs2083411	T	C	4419.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:192,206:0.52:398
chr2	240961852	rs7596788	A	G	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	240969312	rs10187574	A	G	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.21;MQRankSum=1.064;QD=11.88;ReadPosRankSum=1.306;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:50,59:0.54:109
chr2	240969483	rs145620667	G	A	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=39.70;MQRankSum=-0.836;QD=19.55;ReadPosRankSum=-1.234;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr2	240981179	rs6731916	T	C	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	240981262	rs6728493	A	C	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	240981375	rs6732185	T	A	4837.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.384;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=-0.051;QD=24.94;ReadPosRankSum=1.977;SOR=0.512;set=HC	GT:AD:AF:DP	1/1:1,193:0.99:194
chr2	240981487	rs60617721	A	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	240982443	rs34596708	C	T	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.05;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	240982449	rs35318485	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	240984789	rs12465491	C	T	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	240985099	rs150098707	G	A	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.62;QD=30.87;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	240985347	rs13030992	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.77;QD=27.68;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	240985511	rs10933560	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	241079382	rs2291769	T	G	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	241389219	rs13421123	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.509;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	241390002	rs3828334	A	G	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:155,137:0.47:292
chr2	241392491	rs4268920	A	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr2	241395353	rs12695019	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	241395503	rs2292832	T	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=2.292;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	241396969	rs11680576	T	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr2	241397326	rs13430967	G	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.254;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-0.631;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	241397331	rs13390118	C	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-0.631;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	241403955	rs3830536	GTGACGCCTGCGTGTGCGTGTCAACGCCTGTGTGCGCGCGT	G	3725.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=5.573;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=5.186;QD=14.73;ReadPosRankSum=1.364;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:151,102:0.40:253
chr2	241404317	rs2229458	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:75,61:0.45:136
chr2	241404499	rs2228327	C	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,67:0.49:137
chr2	241405400	rs10700206	C	CGTG	417.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	241405454	rs6760745	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;MQ=60.24;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr2	241405528	rs2228331	A	G	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:64,73:0.53:137
chr2	241419090	rs73010211	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.617;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.460;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr2	241439326	rs12994525	G	C	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.06;ReadPosRankSum=0.617;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:47,45:0.49:92
chr2	241439329	rs12994526	G	T	1857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=0.729;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:50,48:0.49:98
chr2	241439337	rs12994534	G	A	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=2.512;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:57,50:0.47:107
chr2	241440020	rs12986801	T	C	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:141,123:0.47:264
chr2	241448660	rs59967171	G	GGATA	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	241451351	rs35044862	G	A	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=1.179;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:32,46:0.59:78
chr2	241452198	rs12695025	T	C	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:105,127:0.55:232
chr2	241452212	rs12695026	T	C	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:128,142:0.53:270
chr2	241463453	rs3821348	C	A	4842.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:239,229:0.49:468
chr2	241471592	rs143294477	AAAG	A	1978.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr2	241492255	rs4676428	G	T	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:124,110:0.47:234
chr2	241496567	rs7609147	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr2	241500508	rs10933615	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.25;ReadPosRankSum=-0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	241511709	.	C	T	549.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr2	241512470	rs2001823	G	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	241512762	rs60050801	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	241526259	rs55650580	T	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	241526556	rs60704894	G	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	241528927	rs55893551	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	241528968	rs55976923	G	C	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	241531479	rs3792269	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	241531584	rs2975761	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	241533512	rs17846970	T	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	241533559	rs17846971	C	T	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	241533845	rs2975763	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	241534163	rs17846975	G	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	241536053	rs2953171	C	T	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	241536126	rs7607759	A	G	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr2	241537569	rs17846981	T	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	241538061	rs55878652	T	C	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	241538074	rs2975766	A	G	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	241538229	rs2975767	A	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	241556093	rs112514800	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	241569329	rs2975785	A	G	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:101,102:0.50:203
chr2	241569692	rs3749171	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr2	241570249	rs3749172	A	C	3204.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:141,156:0.53:297
chr2	241570391	rs2975786	A	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	241621799	rs201917032	GC	G	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.59;MQRankSum=0.954;QD=21.38;ReadPosRankSum=0.431;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	241621869	rs74882485	G	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr2	241622195	rs184458523	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr2	241622209	rs4081908	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	241627928	rs1560619	A	G	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	241631267	rs71428453	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-2.992;QD=5.27;ReadPosRankSum=-0.583;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr2	241631413	rs71428454	T	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:88,39:0.31:127
chr2	241631476	rs4328629	C	G	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	241631839	rs202017172	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.74;MQRankSum=0.955;QD=18.07;ReadPosRankSum=-0.660;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	241631886	rs375751722	C	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=20.46;ReadPosRankSum=-0.842;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	241631901	rs372417168	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=18.35;ReadPosRankSum=-0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	241659368	rs6437368	C	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	241666418	rs2060194	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	241674222	rs3755533	T	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	241684660	rs1529665	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	241696840	rs10594016	ATCC	A	5769.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;MQRankSum=0.511;QD=37.71;ReadPosRankSum=0.800;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:9,144:0.94:153
chr2	241700676	rs35945835	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,71:0.48:149
chr2	241702561	rs11688298	T	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	241706164	.	T	TCACACACA	468	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=2;MGOF=30;MMLQ=28;MQ=53.21;NF=7;NR=1;PP=468;QD=58.875;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.65;Source=Platypus;TC=16;TCF=14;TCR=2;TR=8;WE=241706174;WS=241706152;set=Platypus	GT:AD:AF:DP	1/1:8,8:0.50:16
chr2	241706166	.	T	A	434	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=2;MGOF=30;MMLQ=26;MQ=55.42;NF=16;NR=2;PP=434;QD=26.0428451415;SC=TCTCTCTCTCTCACACACACA;SbPval=0.58;Source=Platypus;TC=28;TCF=25;TCR=3;TR=18;WE=241706174;WS=241706152;set=Platypus	GT:AD:AF:DP	1/1:10,18:0.64:28
chr2	241708675	rs2288753	C	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	241713429	rs2288751	T	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	241713646	rs1063353	A	G	6903.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	241722445	rs2288750	G	A	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=1.457;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:49,48:0.49:97
chr2	241722613	rs2288749	A	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr2	241723427	rs2288748	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr2	241726646	rs2288746	A	G	3761.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:175,185:0.51:360
chr2	241728843	rs2288745	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr2	241737017	rs10167412	C	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr2	241808825	rs140694338	AGGCCTCCCT	A	1358.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	241810957	rs10196315	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	241812566	rs12997245	G	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	241815308	rs12464426	A	G	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	241815473	rs12695032	G	A	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	241816545	rs6732985	C	T	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	241818279	rs4273214	C	A	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	241827618	rs6707763	T	C	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	241827696	rs4675869	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	241828012	rs6708304	T	C	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	241828034	rs6707568	A	G	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	241830944	rs10171053	G	T	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	241830969	rs10171067	G	A	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	241831005	rs10195453	C	T	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	241831264	rs6737320	G	A	12591.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:2,464:1.00:466
chr2	241831296	rs6709469	C	G	11626.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr2	241831471	rs6709742	CA	TG	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	241834770	rs4293565	A	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	241834944	rs4468809	T	C	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	241835379	rs12105122	G	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	241835421	rs13426919	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	241835432	rs10933514	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	241859255	rs4675790	T	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	241868950	.	C	T	156.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	241874559	rs12618707	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	242004219	rs11464431	T	TG	11348.73	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr2	242011151	rs6760731	A	G	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	242072280	rs11684830	G	A	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr2	242077496	rs1470414	C	T	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:88,94:0.52:182
chr2	242079007	rs2074828	A	G	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:118,92:0.44:210
chr2	242082222	rs2074834	C	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	242082262	rs6709462	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	242082480	rs758068	A	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	242082559	rs2066941	T	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	242088921	rs3806599	A	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	242099961	rs2017989	C	T	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	242121959	rs34186191	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr2	242122602	rs1974555	T	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	242129487	rs11695874	G	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.055;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:36,42:0.54:78
chr2	242138912	rs34107209	C	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr2	242139402	.	T	TTCCCCTC	355.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr2	242139491	rs2013250	C	T	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	242140785	rs78154103	C	G	5920.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:274,277:0.50:551
chr2	242141719	rs2074840	C	T	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	242142737	rs1179530	T	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	242149010	rs57677160	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	242149073	rs10192730	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	242151585	rs7593101	C	T	3898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-0.507;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:258,216:0.46:474
chr2	242151748	rs7566006	G	C	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr2	242157228	rs78605785	G	T	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:118,83:0.41:201
chr2	242157565	.	C	CGG	128	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=11;HapScore=2;MGOF=49;MMLQ=24;MQ=57.88;NF=2;NR=0;PP=128;QD=75.5;SC=AGGGGCGGGGCGGGGGGGCAG;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=242157573;WS=242157555;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr2	242163359	rs7590653	G	A	3541.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:146,158:0.52:304
chr2	242176188	rs2305071	G	C	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:102,112:0.52:214
chr2	242179134	rs10153800	G	A	3675.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:139,167:0.55:306
chr2	242192848	rs7578199	T	C	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:94,81:0.46:175
chr2	242203916	rs11891776	A	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	242206956	rs35334418	C	T	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	242255830	rs13006939	C	T	1772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=0.622;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:87,85:0.49:172
chr2	242259614	rs6745662	G	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr2	242283071	rs6750169	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	242283094	rs6707518	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr2	242289663	rs3217007	C	CATT	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	242374215	rs35614125	C	T	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	242374519	rs34882686	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-1.640;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	242396033	rs2074775	A	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:75,76:0.50:151
chr2	242396087	rs2074774	A	T	3504.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:162,166:0.51:328
chr2	242402061	rs13011791	T	A	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:95,69:0.42:164
chr2	242407478	rs10933558	A	G	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr2	242407746	rs10933559	A	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:76,45:0.37:121
chr2	242432704	rs2271030	G	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	242433348	rs2018761	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr2	242435042	rs35393467	C	T	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.140;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:83,90:0.52:173
chr2	242440221	rs13013693	G	A	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:110,126:0.53:236
chr2	242542298	rs6437269	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr2	242556732	rs7580021	G	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr2	242557019	rs7580246	G	A	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.82;ReadPosRankSum=2.021;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:23,33:0.59:56
chr2	242557028	rs36043566	G	C	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.60;ReadPosRankSum=0.148;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,32:0.63:51
chr2	242572262	rs112423548	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	242572846	rs3208142	A	G	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:125,103:0.45:228
chr2	242573211	rs7424328	T	C	5184.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	242576695	.	G	C	1019.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr2	242577022	rs4675796	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr2	242590237	rs4464318	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	242590338	rs35731596	A	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:62,64:0.51:126
chr2	242593114	rs4567973	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr2	242593834	rs369235839	TA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=9.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.922;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	242594622	rs6712888	C	T	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=2.201;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:31,60:0.66:91
chr2	242606036	rs6709768	G	C	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:162,159:0.50:321
chr2	242607483	rs7565540	GC	TT	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr2	242610773	rs7601000	T	A	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:101,107:0.51:208
chr2	242611050	rs1130910	C	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr2	242612909	rs1130906	A	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	242613089	rs7943	A	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr2	242613133	rs7740	T	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=2.164;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr2	242615462	rs5860	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr2	242617792	rs4076640	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr2	242618050	rs1131195	A	G	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:70,78:0.53:148
chr2	242622192	rs35052478	A	AG	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;MQ=59.04;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	242622326	rs4347866	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	242625413	rs62191287	A	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr2	242648545	rs7595652	C	T	1789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.24;ReadPosRankSum=0.380;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:47,46:0.49:93
chr2	242648549	rs7568408	G	A	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=0.427;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:50,49:0.49:99
chr2	242658779	rs71351113	A	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr2	242659554	rs34766121	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr2	242662761	rs7572153	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr2	242674803	rs77940364	G	A	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,78:0.47:166
chr2	242674959	rs62191977	T	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	242680366	rs4073890	A	G	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:91,59:0.39:150
chr2	242680430	rs4073889	A	G	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-1.833;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:132,116:0.47:248
chr2	242682029	rs78147778	T	C	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr2	242684115	rs4234097	T	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr2	242684394	rs4675884	G	C	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	242688203	rs34519321	C	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:139,108:0.44:247
chr2	242688292	rs34767042	C	T	2902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.694;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.322;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:135,145:0.52:280
chr2	242688366	rs35386923	C	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:61,85:0.58:146
chr2	242688434	rs34077392	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr2	242688442	rs35249772	T	TC	494.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr2	242688672	rs78280775	C	T	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:121,105:0.46:226
chr2	242688870	rs113047262	T	C	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:141,115:0.45:256
chr2	242690675	rs1106639	G	A	3631.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:112,167:0.60:279
chr2	242707101	rs6756901	A	G	1759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=4.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=0.664;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:112,90:0.45:202
chr2	242716380	rs12469459	A	T	2171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-1.925;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:97,104:0.52:201
chr2	242756255	.	G	A	1837.77	.	AC=1;AF=0.500;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	0/1:78,88:0.53:166
chr2	242793273	rs2227981	A	G	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,78:0.68:114
chr2	242793559	rs6705653	T	C	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr2	242813124	rs13016102	T	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	242839363	rs4973668	G	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:92,83:0.47:175
chr2	242839372	rs78233573	G	A	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr2	242839614	rs13025557	T	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr2	242841399	rs76839945	T	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr2	242842382	rs78173981	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr3	239313	rs35603824	C	CG	574.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr3	239555	rs58240971	C	CT	767.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=1.465;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:37,59:0.61:96
chr3	361508	rs2272522	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr3	367757	rs162734	G	C	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=0.724;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:76,66:0.46:142
chr3	367825	rs13073026	G	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:81,57:0.41:138
chr3	370051	rs62227239	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr3	386520	rs1499046	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	391100	rs13060847	A	G	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.21;SOR=1.478;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	402273	.	C	CT	146	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.9967;HP=15;HapScore=2;MGOF=9;MMLQ=24;MQ=59.91;NF=0;NR=15;PP=146;QD=10.1333333333;SC=ATTGTACTTTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=27;TCF=0;TCR=27;TR=15;WE=402281;WS=402263;set=Platypus	GT:AD:AF:DP	0/1:12,15:0.56:27
chr3	403288	rs9824311	G	A	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.02;ReadPosRankSum=0.342;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr3	403297	rs9839027	C	A	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.918;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.61;ReadPosRankSum=0.072;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr3	403308	rs9824442	G	A	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=0.570;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:32,33:0.51:65
chr3	403345	rs9846775	A	G	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	404771	rs4684390	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	417979	rs3773381	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr3	417994	rs930237	A	G	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	418089	rs3773380	C	T	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:117,109:0.48:226
chr3	439963	rs6442827	A	G	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	440028	rs6771714	T	C	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	440088	rs6771803	T	A	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	447069	rs11705894	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	1215013	rs7632166	A	C	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:157,99:0.39:256
chr3	1215083	rs13077503	C	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:88,44:0.33:132
chr3	1262474	rs2013828	T	C	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:156,80:0.34:236
chr3	1320271	rs3732517	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr3	1337203	rs565499	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	1339680	rs10558016	GGTTTTT	G	1287.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr3	1369278	rs265776	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr3	1415195	rs3765098	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	1424718	rs2291101	G	A	4579.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	1424745	rs4684146	C	T	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	1427566	rs72997748	C	T	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	1427625	rs9820933	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	2671119	rs1351277	A	T	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr3	2777622	rs1554198	A	G	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:79,84:0.52:163
chr3	2908694	rs6789163	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr3	3030223	rs13068264	C	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	3067850	rs7629924	A	G	3500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.25;ReadPosRankSum=0.154;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:111,92:0.45:203
chr3	3067853	rs7639977	G	A	3562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.97;ReadPosRankSum=0.367;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:114,96:0.46:210
chr3	3076218	rs9845519	G	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	3076284	rs6765545	G	C	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	3076443	rs6803232	A	G	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	3080527	rs163543	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	3081750	rs6802588	A	T	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:112,100:0.47:212
chr3	3081825	rs339285	T	C	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	3082025	rs4685596	G	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr3	3084653	rs6800354	C	T	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr3	3115478	rs163897	T	C	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.768;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-0.836;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:45,77:0.63:122
chr3	3115514	rs340807	C	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr3	3116438	rs2290611	G	A	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:81,69:0.46:150
chr3	3118142	rs17878995	G	T	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:94,74:0.44:168
chr3	3133791	rs7647903	G	A	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr3	3137155	rs11389765	A	AT	590.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr3	3139383	rs334802	C	A	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	3143267	rs6771148	G	C	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	3170792	rs334773	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	3170910	rs334772	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	3171460	rs334769	C	T	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	3171502	rs334768	C	A	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	3171713	rs113671187	G	GCCTGACT	3258.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	3179262	rs334767	A	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	3189059	rs1621648	T	C	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	3189279	rs1705805	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	3189398	rs1669348	A	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	3189432	rs61392123	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr3	3192524	rs4183	A	ATAAC	2625.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	3193957	rs1705800	A	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	3196273	rs11300080	AT	A	395.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	3197871	rs1705789	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	3215954	rs1669321	A	G	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	3216985	rs111857248	A	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr3	3217035	rs75631454	G	A	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr3	3217128	rs11332452	AT	A	110.86	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr3	3221430	rs1672753	C	T	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	3886580	rs4685689	A	G	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	3887876	rs2120609	T	C	7985.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr3	4403767	rs2819561	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	4403817	rs2633851	TT	AC	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	4403837	rs2633852	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr3	4404087	rs2819560	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.049;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr3	4452737	rs813811	G	A	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	4461569	rs711667	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr3	4461698	rs711666	C	T	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	4491126	rs17040706	A	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	4508742	rs2819590	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr3	4509080	rs17030569	C	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	4687470	rs5846330	G	GCT	2594.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:4,75:0.95:79
chr3	4687548	rs4271897	A	G	966.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.505;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.586;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.43;ReadPosRankSum=-2.197;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:2,32:0.94:34
chr3	4687577	rs4303850	A	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	4693656	rs6442894	C	T	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	4693937	rs6442895	G	C	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	4694010	rs6442896	A	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	4712413	rs2306875	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.310;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr3	4722532	rs9866640	A	G	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr3	4725619	rs3215005	CA	C	2223.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	4738999	rs149795767	G	GGTGT,GGTGTGT	1461.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.93;MQRankSum=-0.190;QD=36.54;ReadPosRankSum=0.385;SOR=1.358;set=HC	GT:AD:AF:DP	1/2:3,20,17:0.50,0.42:40
chr3	4767262	rs7613447	T	C	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:88,181:0.67:269
chr3	4817057	rs6442905	T	C	4479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-1.321;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:83,209:0.72:292
chr3	4820911	rs138057778	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	4829575	rs17786144	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr3	4856180	rs711631	T	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr3	4856650	rs2304820	T	C	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:73,116:0.61:189
chr3	4856993	rs6442911	C	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	4859725	rs9844268	G	A	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	4872811	.	T	TCACACACACA	380.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.42;QD=34.61;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	4872813	rs5018278	T	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.64;QD=38.07;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	4872813	.	TC	AC	2531	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=1.0000,1.0000;HP=2;HapScore=4;MGOF=24;MMLQ=25;MQ=61.99;NF=2,3;NR=18,14;PP=2531,295;QD=20;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.57;Source=Platypus;TC=21;TCF=2;TCR=19;TR=20,17;WE=4872823;WS=4872801;set=Platypus	GT:AD:AF:DP	0/1:7,17:0.71:24
chr3	4872813	.	TC	TCACACACACAC	2531	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=1.0000,1.0000;HP=2;HapScore=4;MGOF=24;MMLQ=25;MQ=61.99;NF=2,3;NR=18,14;PP=2531,295;QD=20;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.57;Source=Platypus;TC=21;TCF=2;TCR=19;TR=20,17;WE=4872823;WS=4872801;set=Platypus	GT:AD:AF:DP	0/1:1,20:0.95:21
chr3	4872815	rs5018277	T	A	523.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	4927281	rs4685841	T	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr3	4927308	rs6794077	A	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	4940658	.	CAGAGAG	C,CAG	1157.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;QD=35.08;SOR=2.093;set=HC	GT:AD:AF:DP	1/2:2,7,24:0.21,0.73:33
chr3	4942432	rs724135	C	G	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr3	5024415	rs11398309	A	AT	38.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	5025514	rs139879256	G	GGTGT	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.898;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.588;QD=30.04;ReadPosRankSum=1.568;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:2,18:0.90:20
chr3	5214505	rs141004680	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	5241223	rs377120	C	T	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	5241309	rs410509	C	A	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	6828364	rs1533434	A	G	3213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.055;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:100,154:0.61:254
chr3	6903601	rs342034	A	G	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	7348129	rs17047071	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.098;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr3	7456675	rs712774	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr3	7494245	.	TTGTGTGTGTG	T,TTGTGTGTG	1134.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=32.42;SOR=2.093;set=HC	GT:AD:AF:DP	1/2:0,20,15:0.57,0.43:35
chr3	7494417	rs2229902	A	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr3	7678010	rs7611935	G	A	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	7678090	rs7612048	G	A	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	7732726	rs5846531	AT	A	596.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr3	7735440	.	T	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.020;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:251,38:0.13:289
chr3	8299404	rs145434533	AGAAGGAAGGAAGGAAGGAAGGAAG	A	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.06;ReadPosRankSum=1.363;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr3	8299641	rs4990797	G	C	71.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.36;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr3	8543713	rs5846598	G	GT	3620.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	8609071	rs3774212	G	A	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:55,67:0.55:122
chr3	8667896	rs355058	T	C	22052.77	.	AC=2;AF=1.00;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	1/1:0,823:1.00:823
chr3	8669361	rs1533001	C	A	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:73,147:0.67:220
chr3	8669367	rs5846608	TG	T	8900.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	8671319	rs142926392	C	CTGACTCACCAGTGGTTCACAGA	2840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.52;ReadPosRankSum=0.438;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:71,61:0.46:132
chr3	8675318	rs2276801	C	T	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	8675778	rs11131140	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	8676204	rs3774210	A	G	7782.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	8676945	rs3816911	T	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	8677049	.	G	C	1005.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr3	8705277	rs12634985	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,53:0.62:86
chr3	8705555	rs34054872	T	C	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:104,48:0.32:152
chr3	8712799	rs62244201	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:106,81:0.43:187
chr3	8712913	rs137979773	C	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr3	8757311	rs17049469	G	C	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	8775589	rs1974763	C	T	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:276,157:0.36:433
chr3	8784046	rs34044666	C	CA	570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=1.304;QD=9.84;ReadPosRankSum=-0.958;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:16,42:0.72:58
chr3	8787123	rs13060135	G	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr3	8787164	rs139242554	AAGCGGGTGGCTTCTGTG	A	1794.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:85,51:0.38:136
chr3	8787220	rs13087941	T	C	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.959;QD=6.83;ReadPosRankSum=1.905;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:125,66:0.35:191
chr3	8809703	rs2228485	G	A	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:41,74:0.64:115
chr3	8931984	rs656626	A	C	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	8932189	rs607531	C	T	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	8943988	rs464302	C	A	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	8955240	rs430781	T	C	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	8955389	rs373572	C	T	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	8988809	rs689296	C	T	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	9005078	rs615967	C	T	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr3	9027704	rs341785	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr3	9055293	rs35295033	G	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr3	9066853	rs421041	T	C	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:157,203:0.56:360
chr3	9069747	rs416685	A	G	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:63,95:0.60:158
chr3	9069873	rs10510396	A	G	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:91,130:0.59:221
chr3	9074617	rs9839715	C	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr3	9079664	rs884236	A	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	9079714	rs867528	A	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=2.417;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:45,28:0.38:73
chr3	9079896	rs884237	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.07;ReadPosRankSum=-0.718;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr3	9089254	rs2244864	C	G	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	9090944	rs111520352	C	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr3	9091151	rs610457	C	G	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:117,77:0.40:194
chr3	9102137	rs6775479	G	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr3	9122948	rs2664089	A	G	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	9123116	rs2669986	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	9123134	rs2664088	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr3	9166281	rs735253	G	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr3	9406661	rs2728949	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr3	9406836	rs1054975	T	C	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:89,139:0.61:228
chr3	9407022	rs2648536	T	C	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:55,68:0.55:123
chr3	9408443	rs2648535	A	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	9422210	rs2596916	T	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr3	9425911	rs1129170	G	A	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr3	9425944	rs1046788	G	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr3	9426224	rs1129174	G	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr3	9426330	rs61751573	A	G	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.782;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr3	9489767	rs2258735	T	C	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	9495385	rs2648580	A	G	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	9547950	rs2625890	G	C	1546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=5.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-1.527;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:70,45:0.39:115
chr3	9547959	rs2625889	C	T	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.350;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:65,41:0.39:106
chr3	9730529	.	G	GT	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=4.881;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.962;QD=0.82;ReadPosRankSum=-2.637;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:211,47:0.18:258
chr3	9743398	rs144534173	TGGAG	T	1383.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr3	9754591	rs147141975	GA	G	1688.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr3	9757086	rs697820	C	G	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	9757511	.	T	C	28	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=3;NR=0;PP=28;QD=20.9237375157;SC=CTGTCAGAAGTTGAACAGGGT;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=3;WE=9757519;WS=9757510;set=Platypus	GT:AD:AF:DP	1/0:5,3:0.38:8
chr3	9757754	rs708571	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr3	9783147	rs696513	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	9803126	rs17252807	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	9807885	rs62245635	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,63:0.56:113
chr3	9822275	rs3868897	C	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	9829171	rs2290309	G	A	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	9829226	rs293786	A	C	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr3	9841989	rs6443266	A	G	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	9852059	rs34761997	C	CGAT	2330.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	9852148	rs9827444	G	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	9859456	rs3806672	C	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	9867625	rs3732527	C	T	10120.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	9868577	rs12490900	A	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	9870857	rs2290303	G	A	9603.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr3	9871030	rs2290305	T	G	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	9874670	rs7622954	G	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	9876301	rs13088594	G	T	8755.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr3	9885022	rs3846165	T	C	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	9896351	rs279563	A	G	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	9908749	rs1053239	G	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=-0.667;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr3	9908935	rs17222536	G	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.123;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr3	9918861	rs456168	C	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr3	9932337	rs279558	G	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr3	9934605	rs279553	T	C	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:110,138:0.56:248
chr3	9951038	rs142612801	TAC	T	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.512;QD=1.56;ReadPosRankSum=-0.472;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:187,33:0.15:220
chr3	9962816	rs376511	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	9969932	rs57179462	TGG	T	7954.73	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:139,203:0.59:342
chr3	9970031	rs279549	A	G	12231.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr3	9972493	rs279545	G	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	9975247	rs183956	C	G	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	9976159	rs279552	A	G	8149.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr3	9988175	rs61740128	C	T	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:47,85:0.64:132
chr3	9991388	rs279601	G	C	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr3	10030236	rs496181	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:47,28:0.37:75
chr3	10083526	rs201603399	CTT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.051;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.965;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.612;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr3	10085035	rs803335	G	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	10088179	.	AT	A	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-2.742;QD=6.45;ReadPosRankSum=-3.286;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr3	10088182	.	A	C	157.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.810;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-2.567;QD=6.07;ReadPosRankSum=-3.233;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr3	10088183	.	GA	G	148.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-2.695;QD=5.31;ReadPosRankSum=-2.637;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr3	10088239	rs201770712	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-3.847;QD=6.74;ReadPosRankSum=-0.303;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr3	10088242	rs199726231	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-3.797;QD=6.49;ReadPosRankSum=-0.136;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr3	10088266	rs72492997	G	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-3.266;QD=5.60;ReadPosRankSum=-1.364;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:84,36:0.30:120
chr3	10088299	rs112887807	C	T	1732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=-2.941;QD=11.71;ReadPosRankSum=0.196;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:99,49:0.33:148
chr3	10088308	rs72492998	T	C	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-2.135;QD=11.66;ReadPosRankSum=0.171;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:100,51:0.34:151
chr3	10088343	rs73126218	A	G	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.02;MQRankSum=-2.348;QD=6.17;ReadPosRankSum=1.094;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:89,49:0.36:138
chr3	10088404	.	C	T	869.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr3	10088406	.	TAGTA	T	2048	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=28;MQ=43.58;NF=1;NR=15;PP=2048;QD=131.298691373;SC=GTTCATTACTTAGTAAGTGTC;SbPval=0.68;Source=Platypus;TC=56;TCF=4;TCR=52;TR=16;WE=10088430;WS=10088394;set=Platypus	GT:AD:AF:DP	0/1:40,16:0.29:56
chr3	10088407	.	AG	A	839.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=3.612;MLEAC=1;MLEAF=0.500;MQ=48.53;MQRankSum=-3.836;QD=11.20;ReadPosRankSum=0.318;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:51,24:0.32:75
chr3	10088409	rs375350046	TAAG	T	804.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=48.36;MQRankSum=-4.202;QD=10.87;ReadPosRankSum=0.695;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:51,23:0.31:74
chr3	10088422	rs144167368	C	T	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-3.871;QD=12.69;ReadPosRankSum=-1.004;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr3	10088443	rs145517746	C	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.805;MLEAC=1;MLEAF=0.500;MQ=48.33;MQRankSum=-2.776;QD=6.90;ReadPosRankSum=0.325;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr3	10088443	.	CA	AG	428	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=5;HapScore=1;MGOF=33;MMLQ=29;MQ=42.43;NF=2;NR=10;PP=428;QD=40.1223229052;SC=TAATCTAAAACAGAAAGCTTT;SbPval=0.81;Source=Platypus;TC=46;TCF=11;TCR=35;TR=12;WE=10088452;WS=10088433;set=Platypus	GT:AD:AF:DP	1/0:34,12:0.26:46
chr3	10088444	rs142624538	A	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=48.36;MQRankSum=-2.419;QD=7.63;ReadPosRankSum=-0.332;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr3	10088461	rs150415982	T	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr3	10089723	rs12330369	G	A	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-3.749;QD=9.17;ReadPosRankSum=-0.899;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:98,81:0.45:179
chr3	10089738	rs62245508	A	G	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-4.043;QD=9.93;ReadPosRankSum=-1.136;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:99,84:0.46:183
chr3	10089749	rs12330599	T	C	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-4.313;QD=9.01;ReadPosRankSum=0.522;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:106,79:0.43:185
chr3	10089772	rs79830642	CA	GG	2710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.185;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-4.532;QD=14.98;ReadPosRankSum=1.059;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:108,73:0.40:181
chr3	10089775	rs75389047	A	G	2710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-4.492;QD=15.14;ReadPosRankSum=0.634;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:106,73:0.41:179
chr3	10089815	rs77169020	A	C	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.723;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-5.019;QD=11.71;ReadPosRankSum=-1.767;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:68,36:0.35:104
chr3	10089818	rs78988497	C	T	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-5.215;QD=12.18;ReadPosRankSum=-1.529;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:67,33:0.33:100
chr3	10089828	rs77263972	G	A	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.828;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-5.814;QD=10.04;ReadPosRankSum=-0.765;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:62,25:0.29:87
chr3	10089834	rs74351786	A	T	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.564;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-5.935;QD=9.78;ReadPosRankSum=-0.944;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:56,22:0.28:78
chr3	10089841	rs74509181	C	A	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.120;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-5.891;QD=9.74;ReadPosRankSum=-0.845;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr3	10089852	rs75274508	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr3	10089886	rs73811818	G	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:27,6:0.18:33
chr3	10094159	rs145522204	A	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	10105661	rs369470214	CT	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=24.439;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-14.438;QD=0.71;ReadPosRankSum=-2.533;SOR=2.717;set=HC	GT:AD:AF:DP	0/1:224,28:0.11:252
chr3	10119928	rs34810856	A	G	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr3	10128965	.	CT	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=9.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.591;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	10142949	rs3172417	C	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.143;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.241;QD=4.49;ReadPosRankSum=0.213;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:259,97:0.27:356
chr3	10186447	rs1678593	A	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	10186514	rs779811	T	A	104.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	10188428	rs1678607	T	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	10189929	rs1681660	T	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	10219510	rs1711109	C	T	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:150,182:0.55:332
chr3	10219729	rs1681663	A	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	10241987	rs263410	A	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	10242243	rs263411	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr3	10251196	rs459864	A	G	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	10254797	rs11465897	C	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.591;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr3	10258493	rs2302862	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	10258514	rs2302861	T	C	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	10258762	rs2302860	G	C	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	10261237	rs3895949	A	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	10261248	rs3895948	T	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	10261294	rs3895947	A	G	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=35.74;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	10261294	.	AC	GC,GT	562	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=29;MMLQ=24;MQ=59.68;NF=52,28;NR=21,9;PP=562,492;QD=8.17494811708;SC=GAGCCACCGCACCTGGCTGCC;SbPval=0.45;Source=Platypus;TC=77;TCF=56;TCR=21;TR=73,37;WE=10261303;WS=10261284;set=Platypus	GT:AF:DP	0/1:0.95:77
chr3	10261295	rs11465909	C	T	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.342;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:41,47:0.53:88
chr3	10261329	rs144185216	G	A	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:76,51:0.40:127
chr3	10261594	rs11465911	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.259;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr3	10264480	rs3844283	C	G	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:117,58:0.33:175
chr3	10276163	rs708035	T	A	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-1.825;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:135,102:0.43:237
chr3	10280753	rs11465932	G	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr3	10283716	rs796552	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr3	10290839	rs2072577	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:117,91:0.44:208
chr3	10302172	rs394558	G	A	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:114,110:0.49:224
chr3	10302369	rs451952	T	C	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:107,80:0.43:187
chr3	10302395	rs439483	G	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:74,55:0.43:129
chr3	10302479	rs402330	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	10318230	rs3217211	A	AT	1528.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:73,52:0.42:125
chr3	10320865	rs2075355	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr3	10328250	rs35683	A	C	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr3	10342876	rs696221	C	T	2461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.585;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-1.985;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:208,133:0.39:341
chr3	10346996	rs200033116	T	TA	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr3	10370486	rs4327369	G	C	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:155,86:0.36:241
chr3	10379923	rs35678	C	T	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:187,134:0.42:321
chr3	10382111	rs171337	T	C	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:128,91:0.42:219
chr3	10382148	rs154242	G	A	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:150,119:0.44:269
chr3	10387059	rs241509	C	A	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:131,93:0.42:224
chr3	10387275	.	C	A	3865.77	.	AC=1;AF=0.500;AN=2;DP=276;set=Intersection	GT:AD:AF:DP	0/1:96,180:0.65:276
chr3	10400643	rs28113	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr3	10401856	rs2278554	G	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr3	10419856	rs56113011	C	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	10420087	rs751122	T	C	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:84,62:0.42:146
chr3	10420875	rs4684686	G	A	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:93,53:0.36:146
chr3	10421107	rs7616000	A	G	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:162,112:0.41:274
chr3	10427190	rs725027	C	T	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr3	10442779	rs26797	C	T	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,81:0.51:158
chr3	10452231	rs34907	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	10885920	rs2304725	T	C	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr3	10916613	rs78860697	C	T	5232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=4.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.004;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:210,242:0.54:452
chr3	11062062	rs3774070	C	T	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chr3	11064091	rs6344	G	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr3	11070542	rs11290120	GC	G	823.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr3	11075503	rs2246543	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr3	11076400	rs35957531	C	G	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:243,113:0.32:356
chr3	11078373	rs2697134	G	A	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr3	11300707	rs901865	T	C	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	11350553	rs2305686	C	T	6973.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	11487891	rs2442798	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	11551856	rs369095431	TA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=8.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.681;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr3	11596302	rs8154	T	C	5990.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:220,285:0.56:505
chr3	11596402	rs1046593	C	T	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:89,101:0.53:190
chr3	11643465	rs2276749	T	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	11667714	rs3856802	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:59,36:0.38:95
chr3	11685143	rs34152653	T	TA	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.299;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:31,21:0.40:52
chr3	11734748	rs73813008	T	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=1.861;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr3	11744544	rs11411195	G	GA	2384.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	11831953	rs9267	C	T	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	11874762	rs12494203	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr3	11880816	rs303862	C	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:43,12:0.22:55
chr3	11886365	rs392621	T	C	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.847;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-0.610;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:84,63:0.43:147
chr3	11886451	rs380999	G	A	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-0.863;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:122,84:0.41:206
chr3	11887991	rs408600	C	G	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:151,79:0.34:230
chr3	11912797	rs62246062	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.88;QD=27.46;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	11924613	rs369394286	AG	A	1823.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.85;QD=30.40;SOR=1.812;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	11925136	rs423051	T	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.88;QD=29.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	11925489	rs2470561	C	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.65;QD=28.82;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	11925610	rs421090	C	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	12045891	rs79624759	T	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	12045899	rs77368781	C	T	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.33;SOR=3.556;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	12045923	rs73135622	A	C	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	12045986	rs67270413	G	A	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	12046013	rs72624441	A	C	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	12046076	rs2618395	T	C	6612.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr3	12046124	rs76272937	AG	GC	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=44.58;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	12046131	rs74213196	A	C	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=46.20;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	12046148	rs2623874	C	T	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=49.40;SOR=2.522;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	12046168	rs2623875	A	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	12046196	rs2600233	A	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	12046207	rs2600234	C	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	12046215	rs2623876	G	C	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	12046222	rs71624921	A	C	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	12046362	rs2923856	G	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	12046364	rs2923857	G	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	12046372	rs2623877	G	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	12046445	rs2600235	TT	GC	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	12202866	rs308950	C	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	12208652	rs795008	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	12208671	rs795009	G	T	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	12229015	rs794999	A	G	18886.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr3	12232074	rs310764	A	G	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	12232208	rs310765	T	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	12317739	rs151229409	GAAGGGAGGAAGGA	G	3835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.67;MQRankSum=4.105;QD=28.84;ReadPosRankSum=0.657;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:36,97:0.73:133
chr3	12537955	rs299651	T	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr3	12557936	rs376667792	AC	A	265.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.96;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	12557938	.	AAAATATATGTGTG	A	82.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.55;ReadPosRankSum=1.150;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr3	12560763	rs1618545	A	T	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:47,86:0.65:133
chr3	12570572	rs299632	C	T	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:70,92:0.57:162
chr3	12573998	rs167257	T	C	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr3	12598839	rs2255655	C	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr3	12613866	rs2648307	T	C	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:62,85:0.58:147
chr3	12616533	rs3773341	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr3	12617996	rs1542848	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr3	12618269	rs2442805	C	T	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:53,69:0.57:122
chr3	12633424	rs34541887	A	AT	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.201;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	12645007	rs2596828	C	T	3158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.184;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:134,154:0.53:288
chr3	12647547	rs3214791	T	TG	560.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr3	12650482	rs2454440	T	A	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	12660291	rs3729926	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr3	12776428	rs3732687	A	C	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:74,78:0.51:152
chr3	12779409	rs2271209	A	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr3	12791172	rs937915	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr3	12810629	rs112818257	CCGGGACTGG	C	1063.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr3	12810755	rs7641959	G	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	12810783	rs61606491	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	12838184	rs78302043	C	T	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:79,102:0.56:181
chr3	12838293	rs12631514	G	C	3661.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:119,168:0.59:287
chr3	12845158	rs9835677	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr3	12848822	rs11718898	T	C	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:74,103:0.58:177
chr3	12849011	rs34529773	TA	T	805.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr3	12849031	rs59302336	C	CA	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-1.843;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:19,28:0.60:47
chr3	12856806	rs374837362	C	T	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:85,125:0.60:210
chr3	12856856	rs2305398	A	G	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:84,116:0.58:200
chr3	12857493	rs2305397	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:100,122:0.55:222
chr3	12857823	rs731646	C	T	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:56,89:0.61:145
chr3	12858028	rs3732675	T	C	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:106,122:0.54:228
chr3	12859004	rs3732678	A	C	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:82,140:0.63:222
chr3	12861510	.	C	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=1.303;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:232,32:0.12:264
chr3	12875443	rs12629133	G	A	3212.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:134,148:0.52:282
chr3	12881199	rs151156404	C	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr3	12941094	rs3773308	G	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	12942850	rs56387830	GC	G	3463.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	12953388	rs113019446	C	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr3	12954868	rs2600322	A	G	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:104,45:0.30:149
chr3	12956531	rs2255964	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr3	12962101	rs115632343	G	A	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:61,82:0.57:143
chr3	12976863	rs2600206	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr3	12983423	rs72624443	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	13008814	rs72624444	G	C	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.471;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:39,39:0.50:78
chr3	13359433	rs354477	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	13361238	rs2276748	C	T	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr3	13361287	rs354478	C	T	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=0.346;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:44,69:0.61:113
chr3	13361391	rs354479	A	G	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:64,85:0.57:149
chr3	13364876	rs514084	G	T	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:97,134:0.58:231
chr3	13367406	rs665064	C	T	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr3	13368892	rs2271509	G	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr3	13379400	rs3773302	C	T	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:143,87:0.38:230
chr3	13383540	rs2271504	A	G	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:220,134:0.38:354
chr3	13393166	rs11292029	CT	C	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-0.437;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr3	13395579	rs2280084	C	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:110,67:0.38:177
chr3	13399786	rs6795271	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr3	13399948	rs6807718	T	C	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:154,115:0.43:269
chr3	13407556	rs3732671	T	C	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=0.318;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:69,49:0.42:118
chr3	13415146	rs6810356	G	T	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:98,70:0.42:168
chr3	13418086	rs6442377	C	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr3	13419123	rs35998066	T	TG	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr3	13420624	rs6442378	G	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr3	13421150	rs7628051	C	T	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr3	13421320	rs7625586	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr3	13438830	rs13066607	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	13539850	rs75944917	C	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr3	13574068	rs35913726	AC	A	766.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr3	13612181	.	G	A	2573.77	.	AC=1;AF=0.500;AN=2;DP=320;set=Intersection	GT:AD:AF:DP	0/1:184,135:0.42:319
chr3	13649762	rs2276747	G	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	13659897	rs4596126	A	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	13661047	rs2280304	A	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr3	13669537	rs1966825	T	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr3	13670481	rs2242023	A	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:184,88:0.32:272
chr3	13670536	rs9843344	A	G	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:172,96:0.36:268
chr3	13670776	rs4684968	T	C	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=1.153;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:72,44:0.38:116
chr3	13670837	rs4684969	T	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr3	13678173	rs2290188	G	T	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr3	13679044	rs4684148	G	A	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:148,91:0.38:239
chr3	13679203	rs1061375	G	A	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:177,155:0.47:332
chr3	13679335	rs1061376	C	T	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:133,81:0.38:214
chr3	13679688	rs1061390	T	A	3546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.15;ReadPosRankSum=-1.032;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:49,92:0.65:141
chr3	13679695	rs1061398	C	A	3664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.11;ReadPosRankSum=-0.791;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:55,97:0.64:152
chr3	13679708	rs12968	C	A	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-0.633;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:66,112:0.63:178
chr3	13679829	rs7820	C	T	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	13679850	rs71773469	TTA	T	507.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr3	13679855	rs7596	T	A	224.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	13916407	rs3749319	G	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr3	14105882	rs4684179	C	A	5877.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.99;ReadPosRankSum=1.036;SOR=0.522;set=HC	GT:AD:AF:DP	1/1:9,187:0.95:196
chr3	14105885	.	GCAGCAGCAGCCC	G	3194.73	.	AC=1;AF=0.500;AN=2;DP=315;set=Intersection	GT:AD:AF:DP	0/1:116,100:0.46:216
chr3	14106310	.	T	TCCAGCACCAGCAGTC	7821.73	.	AC=2;AF=1.00;AN=2;DP=345;set=Intersection	GT:AD:AF:DP	1/1:5,244:0.98:249
chr3	14106329	.	G	GCACCAGCAGTCC	2973	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=26;MQ=59.93;NF=28;NR=66;PP=2973;QD=20;SC=AGCAGTCCCAGCAGCAGCAGT;SbPval=0.36;Source=Platypus;TC=277;TCF=74;TCR=203;TR=94;WE=14106351;WS=14106319;set=Platypus	GT:AD:AF:DP	1/0:183,94:0.34:277
chr3	14106499	rs2607779	G	A	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	14154231	rs2731316	T	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	14157890	rs2607747	C	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,54:0.54:100
chr3	14157913	rs2731314	A	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:63,68:0.52:131
chr3	14158220	rs2731313	G	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	14166835	rs2733579	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr3	14172974	rs3964375	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr3	14173963	rs4685074	G	T	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:129,69:0.35:198
chr3	14174146	rs4685075	T	C	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-0.053;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:59,29:0.33:88
chr3	14174427	rs4685076	A	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:98,66:0.40:164
chr3	14175149	rs2733585	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr3	14175262	rs2340917	T	C	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:156,150:0.49:306
chr3	14176446	rs6766740	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr3	14180633	rs2731320	C	T	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr3	14187449	rs2228001	G	T	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	14187699	rs2733532	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	14187710	rs3731175	T	C	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr3	14188700	rs2733533	C	A	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	14188762	rs2733534	G	C	13884.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr3	14189340	rs2607749	A	G	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	14190237	rs2279017	T	G	7225.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	14190268	rs2470353	G	C	7921.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	14193889	rs2227998	C	T	3665.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:327,190:0.37:517
chr3	14197987	rs2958057	A	T	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	14199887	rs2228000	G	A	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:122,150:0.55:272
chr3	14201400	rs3731124	T	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	14208625	rs3729587	G	C	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:119,77:0.39:196
chr3	14211865	rs3731081	C	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr3	14220095	rs2607775	C	G	31479.77	.	AC=2;AF=1.00;AN=2;DB;DP=1150;set=Intersection	GT:AD:AF:DP	1/1:0,1150:1.00:1150
chr3	14486392	rs3773189	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	14526538	rs1062540	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.761;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,28:0.47:60
chr3	14526612	rs35363110	AT	A	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.939;QD=5.87;ReadPosRankSum=-1.258;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr3	14526656	rs1126666	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	14537867	rs11918344	A	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr3	14538072	rs11333211	CA	C	6567.73	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:128,205:0.62:333
chr3	14548494	rs2276755	A	G	2894.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:76,127:0.63:203
chr3	14551444	rs9845816	A	G	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:156,168:0.52:324
chr3	14552994	rs4685168	A	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr3	14554476	rs4516597	T	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:35,78:0.69:113
chr3	14555009	rs4685170	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr3	14555216	rs4685171	T	C	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:147,223:0.60:370
chr3	14555367	rs4685172	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr3	14555739	rs4361268	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr3	14555758	rs138623401	C	CAGTT	2202.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr3	14555811	rs4613440	A	G	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,72:0.56:128
chr3	14561627	rs5846840	A	AG	1829.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	14563033	rs116135483	C	T	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr3	14563237	rs7645232	G	A	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:75,110:0.59:185
chr3	14565017	rs4685173	G	A	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:93,170:0.65:263
chr3	14702848	rs3832217	A	AT	213.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	14702982	rs2276754	C	A	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	14703297	rs9840626	C	G	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:87,146:0.63:233
chr3	14703401	rs55915506	CATAATTACA	C	409.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr3	14706598	rs151323660	G	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-0.310;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr3	14706745	rs142447115	T	TATTG	53.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	14706770	rs3836383	A	ATTGG	52.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	14708918	rs2280383	A	G	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	14709436	rs11707480	T	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	14712473	rs1901	G	A	4738.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:132,196:0.60:328
chr3	14724413	rs9821143	G	A	8632.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:303,381:0.56:684
chr3	14725668	rs12488352	G	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	14744509	rs73137403	C	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr3	14756730	rs9869372	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.06;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	14768534	rs7636830	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	14905513	rs172429	T	G	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr3	14939198	rs2117775	G	A	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr3	14939364	rs2117774	G	A	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr3	14939479	rs2164356	G	T	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:140,181:0.56:321
chr3	14939679	rs2307090	G	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,71:0.65:109
chr3	14940275	rs61757393	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:102,74:0.42:176
chr3	14942675	rs293906	G	A	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:38,68:0.64:106
chr3	14949268	rs9818644	C	T	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr3	14958545	rs74834668	C	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	14958865	rs55872093	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr3	14960170	rs293916	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr3	14965466	rs4685234	C	T	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr3	14965507	rs4685235	A	G	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr3	15115478	rs9830744	C	T	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:161,93:0.37:254
chr3	15115723	rs9851219	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr3	15115872	rs9868848	A	G	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:92,86:0.48:178
chr3	15117125	rs2306853	G	A	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:151,104:0.41:255
chr3	15118733	rs746665	A	T	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:111,81:0.42:192
chr3	15119720	rs2306854	A	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-1.125;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:88,40:0.31:128
chr3	15119804	rs2306855	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr3	15122220	rs3830319	A	ACAT	2030.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:80,55:0.41:135
chr3	15123866	rs201579870	C	T	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:150,168:0.53:318
chr3	15127522	rs72400013	CTAG	C	601.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr3	15133088	rs9869512	C	T	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:94,73:0.44:167
chr3	15259992	rs35247476	G	A	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:98,119:0.55:217
chr3	15301363	rs2291853	G	A	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:131,142:0.52:273
chr3	15311325	rs1287467	A	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	15311464	rs1287468	G	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	15345924	rs9828229	G	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr3	15371819	rs3773464	C	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	15371938	rs149825084	G	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:66,73:0.53:139
chr3	15471528	rs11322247	AT	A	1044.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr3	15473515	rs2290535	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr3	15476011	rs1563415	C	G	3088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.284;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:486,192:0.28:678
chr3	15613279	rs200924343	T	TA	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.613;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.858;QD=4.34;ReadPosRankSum=-0.734;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:54,30:0.36:84
chr3	15643043	rs2019160	A	G	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:322,232:0.42:554
chr3	15717693	rs2246960	G	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	15718652	rs2470540	T	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	15736385	rs2455814	A	T	11510.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:2,420:1.00:422
chr3	15737610	rs2470547	T	C	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	15737689	rs2470548	G	A	13087.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr3	15737698	rs2470549	T	C	13265.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr3	15752830	rs2455833	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	15753641	rs2455834	A	G	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	15756039	rs200662705	G	GAAA	95.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.96;ReadPosRankSum=-0.431;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr3	15756215	rs924754	A	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	15807692	rs73038264	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr3	15807725	rs6789076	T	A	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	15815757	rs73038271	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr3	15900973	rs62243667	A	C	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr3	15901053	rs71064238	CT	C	2901.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	16261139	rs13063387	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr3	16264037	rs2292169	T	A	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=5.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.954;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:28,38:0.58:66
chr3	16268974	rs15767	T	A	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,70:0.64:110
chr3	16268986	rs14576	C	A	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr3	16269066	rs14210	T	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr3	16269117	rs1048619	G	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr3	16305674	rs14080	C	G	14411.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr3	16306485	rs112968077	G	A	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr3	16312564	rs842259	C	T	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	16312716	rs11284055	GT	G	193.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	16313878	rs842260	G	T	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	16327855	rs842274	T	G	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	16343092	rs842283	T	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	16419309	rs34276015	C	T	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:232,147:0.39:379
chr3	16450872	rs1546650	T	C	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:77,89:0.54:166
chr3	16475345	rs372475268	G	A	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:69,45:0.39:114
chr3	16646745	rs9847342	C	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:97,51:0.34:148
chr3	16926445	rs138820460	A	AG	479.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	16926491	rs6442654	G	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	16926521	rs200478663	CT	C	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	16926524	.	CT	C	817.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	16926539	.	CT	C	772.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	16926544	rs368284573	T	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	16926548	.	GT	G	682.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	16926551	.	CG	C	682.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	16926553	.	T	C	691.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	16926557	rs372006934	T	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	16926561	.	CT	C	592.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	16926567	rs373958057	T	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	16926599	rs7626446	T	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	16926607	rs7626448	T	C	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	16926642	rs6442655	A	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.96;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	16926648	rs6442656	T	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	16926666	rs7626542	T	G	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	16974610	rs9880307	C	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr3	17051081	rs28498854	T	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr3	17053499	rs4602367	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:101,83:0.45:184
chr3	17077268	rs17272796	C	T	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.233;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:135,76:0.36:211
chr3	17131421	rs35185988	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr3	17131501	rs11549706	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr3	18058059	rs9310539	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-3.034;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr3	18082839	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-1.435;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr3	18083051	rs73817436	A	T	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:32,70:0.69:102
chr3	18308478	rs9820982	T	C	2895.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:87,136:0.61:223
chr3	18419553	rs9310557	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr3	18419859	rs10460976	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr3	18427924	rs2229261	G	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr3	19190241	rs34370450	G	C	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:92,141:0.61:233
chr3	19436587	rs10470642	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	19556990	rs56353870	AT	A	329.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	19924058	rs76398910	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr3	19925807	rs9882578	A	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr3	19930130	rs76305623	A	T	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:60,97:0.62:157
chr3	19940877	rs2931385	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	19941074	rs2931386	A	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr3	19946992	rs2931394	G	A	91.80	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr3	19947296	rs2929377	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr3	19959756	rs2929366	G	A	4638.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:141,222:0.61:363
chr3	19961330	rs2931403	CT	TC	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr3	19962199	rs2931404	G	C	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr3	19974700	rs2929350	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr3	19975582	rs2929349	A	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr3	19992432	rs6773437	G	T	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	19992588	rs10510496	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:113,64:0.36:177
chr3	20017489	rs4858122	G	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	20017490	rs4858121	G	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.857;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	20020022	.	TGA	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.280;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr3	20025665	rs34961993	G	GGA	436.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;QD=19.85;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr3	20025906	.	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.37;ReadPosRankSum=-0.819;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	20027232	rs2127957	G	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:69,115:0.62:184
chr3	20042834	rs4103004	C	T	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:144,118:0.45:262
chr3	20043502	rs9882323	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:119,67:0.36:186
chr3	20043531	rs9882344	C	T	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr3	20053581	rs2686326	C	T	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:88,131:0.60:219
chr3	20053676	rs6802632	T	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr3	20053735	rs2686325	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr3	20113830	rs3021408	G	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:131,74:0.36:205
chr3	20113989	rs3749180	C	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:85,49:0.37:134
chr3	20114044	rs3828349	T	C	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.577;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.983;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:38,28:0.42:66
chr3	20114048	rs3828348	G	A	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=1.406;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:35,25:0.42:60
chr3	20156279	rs141568671	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	20188074	rs2686314	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr3	20212189	rs1052930	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.376;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr3	20216519	rs61729306	T	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:50,18:0.26:68
chr3	20219885	rs6550402	C	T	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.813;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=8.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=1.385;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr3	21462754	rs451242	A	G	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,52:0.66:79
chr3	21462787	rs427233	G	A	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	21465354	rs811358	G	A	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr3	21552454	.	G	A	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.870;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:140,37:0.21:177
chr3	21553315	rs71976575	AT	A	656.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.288;QD=7.38;ReadPosRankSum=0.272;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:42,47:0.53:89
chr3	21606027	rs3841545	ATT	A	777.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.11;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr3	21792163	rs149636790	GTC	G	128	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	23364883	rs9844558	G	A	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=1.512;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	23364918	rs11921580	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:72,36:0.33:108
chr3	23853119	rs56179735	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr3	23987002	.	A	AGGC	277.73	.	AC=1;AF=0.500;AN=2;DP=17;MQ=60.63;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	23996371	rs4858095	T	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	24006477	rs4858097	T	A	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	24009279	rs67657770	A	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr3	24164510	rs13081063	A	G	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:154,87:0.36:241
chr3	24168981	rs13063628	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr3	25611472	rs67669779	GAC	G	350.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=0.770;QD=25.05;ReadPosRankSum=-0.871;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr3	25674065	.	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-1.103;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chr3	25775253	rs1488992	T	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	25775356	rs6550987	A	C	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr3	25805879	rs11129208	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	25836023	rs9831075	C	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	25902401	rs4681082	G	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	25904394	rs6550999	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	26751493	rs35497952	A	T	5183.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:137,233:0.63:370
chr3	27184801	rs10865812	T	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr3	27203864	rs62255210	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	27204052	rs17854381	G	A	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr3	27233376	rs11926580	G	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	27233498	rs11926556	C	A	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=1.531;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:125,81:0.39:206
chr3	27242887	rs66472045	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr3	27243045	rs17680166	G	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:173,86:0.33:259
chr3	27243119	rs17680194	G	A	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:138,58:0.30:196
chr3	27243871	rs34940413	T	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr3	27257306	.	G	A	305.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	27294507	rs2166214	A	T	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.240;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr3	27296796	rs1550769	C	G	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:98,52:0.35:150
chr3	27296822	rs1550768	A	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,37:0.33:111
chr3	27297684	rs12494667	C	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr3	27297816	rs3213930	G	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:93,44:0.32:137
chr3	27326097	rs11129280	G	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.146;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr3	27326451	rs10510594	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr3	27326553	rs34894168	AC	A	203.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	27329417	rs10510593	A	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	27332282	rs62255594	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr3	27332820	rs10510592	A	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:118,47:0.28:165
chr3	27335350	rs633157	A	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.14;ReadPosRankSum=-2.662;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	27350384	rs77257134	G	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr3	27353716	rs552647	C	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr3	27363637	rs11393122	T	TA	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.133;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr3	27387462	rs56104872	G	GGTAA	2269.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	27387463	rs2370957	C	A	2278.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	27394419	rs12494966	T	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr3	27424718	rs1472256	A	G	7330.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	27427616	rs17630711	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr3	27431872	.	T	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-1.542;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr3	27433397	rs2307035	A	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	27444524	rs1967131	G	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	27494620	rs12639265	A	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr3	27525403	.	GGGGATGGCGA	G	816	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=3;HapScore=1;MGOF=10;MMLQ=24;MQ=60.0;NF=3;NR=1;PP=816;QD=212.5;SC=GCCACACAAAGGGGATGGCGA;SbPval=0.24;Source=Platypus;TC=15;TCF=14;TCR=1;TR=4;WE=27525420;WS=27525394;set=Platypus	GT:AD:AF:DP	1/0:11,4:0.27:15
chr3	27759322	rs34777083	TA	T	294.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.021;QD=8.94;ReadPosRankSum=0.934;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr3	27759404	.	C	T	20	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=19;MQ=57.47;NF=1;NR=3;PP=20;QD=13.6928031368;SC=TTATCTACACCGAAAGTGCTG;SbPval=0.55;Source=Platypus;TC=11;TCF=2;TCR=9;TR=4;WE=27759412;WS=27759394;set=Platypus	GT:AD:AF:DP	0/1:7,4:0.36:11
chr3	28454627	rs148504648	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chr3	28557206	.	C	CTG	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-0.934;QD=15.32;ReadPosRankSum=-0.553;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	29224786	rs11919232	T	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-1.145;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr3	29476428	rs3773018	G	A	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	29529907	rs2371695	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr3	29529913	rs5847572	TTC	T	754.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr3	29628771	.	AAG	A	73	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=1;MGOF=68;MMLQ=25;MQ=54.1;NF=0;NR=5;PP=73;QD=16.6;SC=GTGTGTGTGAAAGAGAGAGAG;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=5;WE=29628780;WS=29628761;set=Platypus	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	29781465	rs71091076	C	CA,CAA	321.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=9.294;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=-0.974;SOR=5.549;set=HC	GT:AD:AF:DP	1/2:2,8,10:0.40,0.50:20
chr3	29804300	rs7340719	C	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	29804487	rs1371839	A	T	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=1.588;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:98,52:0.35:150
chr3	29804509	rs1371840	T	C	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-0.244;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:105,58:0.36:163
chr3	29977739	rs1449287	T	C	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	30686414	rs1155705	A	G	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:49,90:0.65:139
chr3	30713126	rs11466512	T	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr3	30732821	rs2276767	C	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr3	30842298	rs71773602	GACACAC	G	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.82;ReadPosRankSum=1.383;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	30842346	rs10553550	AAGAG	A	834.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=37.94;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	30842350	.	G	A	546	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=2;HapScore=3;MGOF=9;MMLQ=30;MQ=56.88;NF=6;NR=2;PP=546;QD=72.5964015684;SC=CACAGAAAGAGAGAGAGAGAG;SbPval=0.74;Source=Platypus;TC=30;TCF=21;TCR=9;TR=8;WE=30842359;WS=30842322;set=Platypus	GT:AD:AF:DP	1/1:22,8:0.27:30
chr3	30842597	rs59931065	A	AT	595.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	31621228	rs58289734	T	TAAA	1406.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	31642037	rs11713598	A	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	31658678	rs368561756	C	CTT	360.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;MQRankSum=0.530;QD=20.04;ReadPosRankSum=0.390;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr3	31663515	rs10662891	A	AGTGTG	1091.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	31677395	rs11129457	T	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	31725316	rs2278959	G	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:130,68:0.34:198
chr3	31789582	rs2290532	T	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:80,56:0.41:136
chr3	31789724	rs2290533	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr3	31839135	rs7653447	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	31839242	rs7643025	T	C	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	32022333	.	GCA	G	78	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=23;MQ=59.83;NF=3;NR=3;PP=78;QD=13.8333333333;SC=ACACACGCACGCACACACACA;SbPval=0.47;Source=Platypus;TC=27;TCF=11;TCR=16;TR=6;WE=32022344;WS=32022323;set=Platypus	GT:AD:AF:DP	0/1:21,6:0.22:27
chr3	32148085	rs1077601	C	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=1.271;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	32188006	rs9839702	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr3	32200233	rs2305362	G	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr3	32200322	rs2305361	T	C	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=0.781;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:27,67:0.71:94
chr3	32200971	.	A	G	285.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=2.023;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr3	32200972	rs67330076	AG	A	276.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.751;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=2.022;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr3	32207606	rs6799559	A	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr3	32433585	rs3732845	G	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=1.107;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr3	32493682	rs342745	A	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	32510017	rs441171	G	A	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:88,189:0.68:277
chr3	32568145	rs3836420	C	CCA	829.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr3	32571823	.	GAAA	G	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.913;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr3	32746522	rs7429569	A	G	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	32758763	rs11129531	G	A	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr3	32766905	rs6550155	A	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr3	32774782	rs9798936	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	32801173	rs9832822	A	G	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr3	32815231	rs2396631	A	T	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	32915214	rs6799979	C	G	7823.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr3	32927509	rs6774703	G	T	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	32933344	rs10630076	G	GTC	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=2.430;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr3	32933360	.	C	CTT	1134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=1.416;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:33,33:0.50:66
chr3	32995928	rs2228428	C	T	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-1.076;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:50,74:0.60:124
chr3	33055721	rs4302331	A	G	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	33093190	rs12632196	T	C	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	33099880	rs7637435	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	33135592	rs61749982	T	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:180,95:0.35:275
chr3	33138544	rs7614776	A	G	19229.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,429:1.00:429
chr3	33138549	rs7637099	G	A	19277.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr3	33165303	rs4320036	C	G	176.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	33165436	rs6777433	T	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	33171659	rs4392367	A	G	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	33174156	rs1135127	T	G	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	33174168	rs1135128	G	A	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	33175793	rs4234239	C	A	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	33175854	rs58617854	A	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	33216357	rs57072412	G	A	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	33255592	rs9637517	A	G	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	33344374	rs114742666	C	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr3	33434128	rs62252101	G	A	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr3	33444286	rs623244	T	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	33602326	.	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.111;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:97,22:0.18:119
chr3	33612364	rs67476972	TA	T	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=3.033;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr3	33618551	rs11391504	G	GA	914.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=23.45;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	33626219	rs371484858	TA	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.272;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	33725814	.	G	GA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=3.958;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.044;QD=0.97;ReadPosRankSum=0.016;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:82,24:0.23:106
chr3	33879770	rs3203777	G	A	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	33893929	rs59048229	C	CT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.083;QD=5.57;ReadPosRankSum=-0.347;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	35724256	rs1513475	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	35725250	rs969818	C	T	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	35731725	rs1513476	C	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	35756778	rs2305233	A	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	35763362	.	T	C	734.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr3	36422064	rs59881573	G	A	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr3	36422126	rs113135397	C	T	5195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.83;ReadPosRankSum=0.348;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:88,130:0.60:218
chr3	36422135	rs112766131	G	A	5620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.04;ReadPosRankSum=0.112;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:102,153:0.60:255
chr3	36422216	rs73052248	T	C	7950.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:234,363:0.61:597
chr3	36422392	.	G	GGACCCGCCGAGACTTGAACGTCCGGTAA	1784.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.466;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=6.793;MLEAC=1;MLEAF=0.500;MQ=60.94;MQRankSum=2.945;QD=21.77;ReadPosRankSum=-1.592;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:38,44:0.54:82
chr3	36484823	rs3749279	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr3	36587541	rs9878872	C	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	36779707	rs3796187	G	A	14503.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr3	36779870	.	T	A	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DP=524;ExcessHet=3.0103;FS=4.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.072;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:411,104:0.20:515
chr3	36884370	rs6771655	C	A	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	36887973	rs4678910	C	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	36888064	rs4678911	G	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	36896653	rs9818599	G	C	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	36915814	rs4296548	T	G	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	36931397	rs74424604	C	T	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:161,178:0.53:339
chr3	36934363	rs7632348	G	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=1.124;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr3	37048633	rs4234259	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	37053568	rs1799977	A	G	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:189,122:0.39:311
chr3	37067095	rs71831268	ATATATTT	A	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.19;ReadPosRankSum=0.497;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	37083740	rs9876116	A	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	37096109	rs113420512	T	TAAC	2841.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	37100166	rs72523902	CAAA	C	901.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.09;ReadPosRankSum=-2.227;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr3	37107022	rs7639375	C	A	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	37107470	rs2302503	G	A	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	37116386	rs2302504	G	T	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	37133124	rs2302506	A	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	37144535	rs2302507	C	A	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	37150988	rs6806252	C	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	37163039	rs336595	G	A	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	37170717	rs3733030	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	37170750	rs3733029	G	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	37285152	rs2271548	C	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.322;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr3	37308262	rs73059487	A	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:113,62:0.35:175
chr3	37308532	rs1040073	C	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr3	37327629	rs58146171	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.359;QD=4.25;ReadPosRankSum=-0.639;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr3	37366459	rs11718848	C	A	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:151,95:0.39:246
chr3	37368755	rs62241896	T	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:121,72:0.37:193
chr3	37369771	rs5847960	ACTCT	A	530.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr3	37376500	rs11396224	C	CT	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr3	37388577	rs3832257	C	CA	213.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr3	37407489	rs17266090	A	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:102,65:0.39:167
chr3	37407664	rs62241901	G	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr3	37476427	rs17266511	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr3	37512646	rs11713408	TG	CC	6041.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;JOINED;set=Intersection	GT:AD:AF:DP	0/1:67,151:0.69:218
chr3	37522792	rs17813754	T	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	37522831	rs17036403	A	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr3	37522875	rs73055204	C	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr3	37523079	rs17227748	G	A	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:97,73:0.43:170
chr3	37574773	rs150542603	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:137,62:0.31:199
chr3	37627112	rs1155741	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:112,67:0.37:179
chr3	37627287	rs3044748	G	GC	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr3	37774304	rs58228096	C	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:141,57:0.29:198
chr3	37778481	rs1118148	G	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:150,76:0.34:226
chr3	37778615	rs2276866	A	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr3	38087024	rs36046028	C	T	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.685;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:53,53:0.50:106
chr3	38134438	rs11129778	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	38173470	.	G	A	895.77	.	AC=1;AF=0.500;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	0/1:104,49:0.32:153
chr3	38348686	rs753330	T	G	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	38350479	rs818819	T	C	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	38350519	rs818818	G	A	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr3	38350543	rs818817	A	G	6873.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	38350630	rs704929	C	A	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	38355176	.	T	TGTGTGCGTGTGCGCGC,TGTGCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGCGCGC	2433.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=42;MQ=62.53;set=Intersection	GT:AF:DP	1/2:0.80,0.20:41
chr3	38355225	rs73064822	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr3	38355509	rs696253	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr3	38357817	rs2070492	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,58:0.41:140
chr3	38390020	rs2615631	C	A	7184.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	38401677	rs818851	C	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	38401839	rs818850	T	C	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	38401918	rs818849	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	38402007	rs818848	T	A	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	38404472	rs17118	C	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr3	38406648	rs704942	T	C	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	38406773	rs704943	G	T	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	38406793	rs2234608	T	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	38408248	rs704946	G	A	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	38408361	rs843890	G	A	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	38408459	rs2234617	A	G	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	38409600	rs704947	T	G	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	38411731	.	G	GCACACACACACACACACA	526.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;QD=47.88;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	38436864	rs139092238	G	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-0.756;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:21,38:0.64:59
chr3	38442490	rs2070488	G	A	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	38519424	rs2070489	A	G	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	38521156	rs13097628	T	C	7230.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	38523684	rs115155428	C	T	2932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=0.782;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:87,143:0.62:230
chr3	38524742	rs1046048	C	T	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr3	38592406	rs1805126	A	G	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:224,134:0.37:358
chr3	38593128	.	TG	T	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=15.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.231;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr3	38597867	rs41315507	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr3	38598606	rs41312391	C	T	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:81,40:0.33:121
chr3	38601556	rs6799868	T	C	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	38622467	rs7430407	T	C	8467.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr3	38627629	rs7645173	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	38627658	rs112524625	T	TC	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.733;QD=3.62;ReadPosRankSum=-0.034;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr3	38648062	rs6599222	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr3	38655643	rs9856587	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr3	38674712	rs6599230	T	C	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.031;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:95,60:0.39:155
chr3	38739574	rs6599241	T	C	6213.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr3	38739845	rs6599242	A	G	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	38748833	rs6790627	T	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,59:0.58:102
chr3	38749026	rs6599248	T	A	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	38749039	rs78376096	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	38750869	rs141575712	G	C	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:61,68:0.53:129
chr3	38764782	rs4076737	G	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr3	38766675	rs6795970	A	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr3	38780971	rs9830687	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr3	38784029	rs6599250	T	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:33,74:0.69:107
chr3	38812650	rs10212338	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr3	38812708	rs4420804	C	T	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr3	38926912	rs6599266	C	G	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	38926977	rs13093915	T	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr3	38936134	rs33985936	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:144,80:0.36:224
chr3	38938299	rs5848481	C	CT	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.619;QD=9.45;ReadPosRankSum=0.444;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr3	38946872	rs4514993	A	T	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr3	38949363	rs6599267	A	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr3	38951437	rs11720056	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr3	38951753	rs7429404	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=-0.972;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr3	38961537	rs6779297	T	C	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr3	38961554	rs148537682	G	GT	959.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr3	38988407	.	C	CA	1704.73	.	AC=1;AF=0.500;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:59,91:0.61:150
chr3	39093326	rs6599003	G	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:107,74:0.41:181
chr3	39107241	rs76429290	A	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr3	39107993	rs10510698	T	G	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr3	39110246	rs12635796	C	T	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=1.612;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:63,44:0.41:107
chr3	39110376	rs34070325	T	TA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=7.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.510;SOR=2.000;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr3	39110393	rs118055305	T	C	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.25;ReadPosRankSum=-0.061;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:16,35:0.69:51
chr3	39111140	rs2293312	C	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:158,74:0.32:232
chr3	39119615	rs13077476	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr3	39125543	rs6777201	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr3	39125609	rs66531425	CTTAATA	C	1074.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr3	39129742	rs3736573	A	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:114,56:0.33:170
chr3	39133309	rs78017613	T	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	39142704	rs2293307	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr3	39144910	rs2293308	A	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,52:0.37:141
chr3	39145186	rs7629643	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr3	39148865	rs138296442	C	T	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr3	39149092	rs6786764	A	G	9006.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr3	39149180	rs6786855	A	G	5567.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:128,231:0.64:359
chr3	39149218	rs28362645	A	T	3364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-0.047;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:289,179:0.38:468
chr3	39149503	rs28362642	A	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:92,54:0.37:146
chr3	39152248	rs7613766	C	G	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	39152345	rs1112438	G	A	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	39152575	rs7614000	C	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	39161456	rs1274972	G	A	9775.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	39161464	rs1274971	G	A	9805.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	39166509	rs784507	A	G	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	39166743	rs2669852	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	39167905	rs784506	G	A	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.91;SOR=1.512;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	39171676	rs35052325	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:206,93:0.31:299
chr3	39172642	rs12637881	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:106,51:0.32:157
chr3	39175576	rs784492	G	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr3	39180099	rs784498	T	C	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:114,178:0.61:292
chr3	39184959	rs1274958	C	T	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:129,141:0.52:270
chr3	39185248	rs784519	A	G	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	39185968	rs810743	A	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr3	39188182	rs13084580	C	T	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.339;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:48,25:0.34:73
chr3	39228043	rs11711871	T	G	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:109,48:0.31:157
chr3	39229900	rs6805248	T	C	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	39230997	rs2271487	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr3	39308293	rs4271863	A	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-0.175;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	39323163	rs11715522	A	C	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	39373902	rs2853699	C	G	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:127,141:0.53:268
chr3	39431081	rs2270770	G	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr3	39433147	rs1995236	G	A	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	39437702	rs34894781	G	GA	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.384;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.742;QD=3.79;ReadPosRankSum=0.572;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr3	39437715	rs35086961	T	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.785;QD=10.80;ReadPosRankSum=1.801;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr3	39437800	rs9877539	A	G	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	39448204	rs3772146	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr3	39448424	rs3772144	T	C	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:93,164:0.64:257
chr3	39448581	rs3772143	T	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:37,71:0.66:108
chr3	39449137	rs1803893	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr3	39450065	rs3772138	C	T	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:80,133:0.62:213
chr3	39450276	rs34149164	C	CAT	1134.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr3	39450362	rs34211462	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr3	39450393	rs71325529	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.55;ReadPosRankSum=1.636;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	39452106	rs2077798	A	G	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr3	39452123	rs2077797	G	A	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=0.522;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr3	39452129	rs2077799	G	T	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.077;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:64,28:0.30:92
chr3	39452772	rs1392192	A	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr3	39453160	rs2269350	G	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:44,64:0.59:108
chr3	39453610	rs2723	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:80,53:0.40:133
chr3	39554786	rs2233204	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr3	40208247	rs10460959	G	T	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr3	40208450	rs12494283	C	G	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:21,71:0.77:92
chr3	40231383	rs55785561	C	T	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:133,76:0.36:209
chr3	40231883	rs1317317	C	T	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:78,120:0.61:198
chr3	40251604	rs111574193	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	40275461	rs34800524	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:96,59:0.38:155
chr3	40286017	rs4618168	T	C	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	40291669	rs9845831	T	C	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:76,91:0.54:167
chr3	40291836	rs34856047	C	T	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:185,107:0.37:292
chr3	40291877	rs9826171	C	T	6691.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	40351277	rs11541150	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr3	40351484	rs11709089	C	T	5611.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:183,261:0.59:444
chr3	40352355	rs35523102	AT	A	1052.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=2.244;SOR=0.506;set=HC	GT:AD:AF:DP	1/1:9,69:0.88:78
chr3	40352884	rs1454492	C	T	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	40353259	rs1470937	T	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	40353425	rs34544743	CAG	C	1991.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	40442365	rs6808095	C	G	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-1.518;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:35,43:0.55:78
chr3	40456026	rs7645864	T	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=-2.200;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	40469051	rs9858868	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr3	40498720	.	T	TACGC	695.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr3	40498845	rs2276868	C	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr3	40498933	rs4973904	A	G	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	40503520	.	A	ACTG,ACTGCTGCTG	5384.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=179;set=Intersection	GT:AF:DP	1/2:0.71,0.24:136
chr3	40503809	rs11539046	G	A	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	40505886	rs11129881	C	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	40519429	rs4553952	T	C	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	40519604	rs56752425	TA	T	625.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr3	40523409	rs9852518	T	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr3	40523642	rs147054612	A	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr3	40557271	rs149748710	TTGTG	T	976.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=0.302;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:18,33:0.65:51
chr3	40557312	.	A	G	398	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=25;MQ=59.83;NF=19;NR=9;PP=398;QD=15.4561147338;SC=TGTGTGTGTGATATCAGGGAC;SbPval=0.7;Source=Platypus;TC=75;TCF=48;TCR=27;TR=28;WE=40557320;WS=40557302;set=Platypus	GT:AD:AF:DP	0/1:47,28:0.37:75
chr3	40558150	rs74970181	G	C	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:54,87:0.62:141
chr3	40571111	rs146039408	TTTTG	T	883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=11.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.78;ReadPosRankSum=-2.549;SOR=0.037;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr3	40573744	rs35633370	A	G	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:67,109:0.62:176
chr3	41274764	rs2691680	C	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	41279440	rs4135385	A	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr3	41607701	rs1565957	C	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	41841716	rs4973986	A	C	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	41877473	.	CA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-1.562;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr3	41923513	rs59960840	GAGGCC	GGGCC,G	1976.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	1/1:1.00:45
chr3	41923515	rs61575884	GGCCA	G	1978.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=2.687;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	41923519	.	A	G	896	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=31;NR=7;PP=896;QD=24.4939792776;SC=GAATGAGGCCATCACATCACC;SbPval=0.76;Source=Platypus;TC=44;TCF=34;TCR=10;TR=38;WE=41923527;WS=41923503;set=Platypus	GT:AD:AF:DP	1/1:6,38:0.86:44
chr3	41925260	rs113374533	CAGAGAAAAAACAAGTGA	C	1084.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	41925301	rs1716685	T	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	41925398	rs1052501	C	T	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	41925423	rs1716687	T	C	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr3	41937000	rs1717003	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	41938500	rs1717005	G	C	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	41939993	rs1625226	T	A	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr3	41942199	rs1717007	T	C	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	41952781	rs1716991	C	T	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	41957466	rs1716698	T	G	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	41960006	rs1716975	T	C	145.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	41960087	.	CTTTT	C	120.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=20.09;ReadPosRankSum=0.674;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr3	41961168	rs1716979	T	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	41977214	rs3934103	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	41977488	rs58069203	CCT	C	8285.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	41996136	rs2272007	T	C	13506.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr3	41996275	rs7651623	A	G	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	42133149	rs4974011	C	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr3	42251577	.	CGGA	C	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DP=376;ExcessHet=3.0103;FS=4.696;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.999;QD=1.51;ReadPosRankSum=0.050;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:252,30:0.11:282
chr3	42251895	rs10717713	TA	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.077;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr3	42299870	rs8192472	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	42304784	rs1868522	A	G	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:111,169:0.60:280
chr3	42305131	rs754635	C	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	42555164	rs41289574	G	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	42577042	rs41289580	C	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-0.365;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr3	42577577	rs116429753	C	T	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:118,88:0.43:206
chr3	42598980	rs2271181	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	42599091	rs2271184	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:103,51:0.33:154
chr3	42599234	rs2271185	C	T	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.097;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:28,35:0.56:63
chr3	42605402	rs9311324	A	C	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:206,127:0.38:333
chr3	42610374	rs2271186	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:67,29:0.30:96
chr3	42610515	rs2271187	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr3	42687278	rs73085333	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr3	42700456	rs339724	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:100,60:0.38:160
chr3	42700630	rs339723	A	G	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr3	42703029	rs199627048	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:71,44:0.38:115
chr3	42728144	rs6805421	A	G	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.535;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:166,61:0.27:227
chr3	42733468	rs123509	T	C	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr3	42735150	rs11079	T	C	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	42735274	rs339697	A	G	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	42738297	rs2290973	G	A	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	42738470	rs114875568	C	A	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:67,118:0.64:185
chr3	42799554	rs111697736	T	TAC	436.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr3	42799858	rs339678	T	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	42907112	rs2228468	A	C	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	42917047	rs9865715	A	G	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	42947776	rs6789928	T	C	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	42954912	rs11129987	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	42956273	rs1427801	T	C	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	42956984	rs834579	A	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	43073761	rs658958	G	A	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	43074430	rs2948619	A	G	7688.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	43074434	rs2936817	C	T	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	43074871	rs588335	A	G	8828.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:1,332:1.00:333
chr3	43095101	rs536119	A	G	6780.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	43095394	rs182327439	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr3	43097710	rs664628	A	G	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr3	43121559	rs604033	C	T	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	43122966	rs2936818	G	A	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	43385025	rs372669640	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.493;QD=1.43;ReadPosRankSum=-0.489;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr3	43414318	rs6441771	A	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	43591142	rs12638282	G	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	43592906	rs9829081	T	C	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr3	43602803	rs3772165	C	T	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	43607136	rs7616708	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.12;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	43642126	rs6441785	C	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	43642156	rs2068969	C	T	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-2.654;QD=15.82;ReadPosRankSum=-2.869;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr3	43642156	.	CTA	TTG	620	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=4;HapScore=1;MGOF=17;MMLQ=28;MQ=59.42;NF=3;NR=13;PP=620;QD=42.0917421789;SC=TATAATGTTTCTAGTCTGGTA;SbPval=0.58;Source=Platypus;TC=43;TCF=8;TCR=35;TR=16;WE=43642166;WS=43642146;set=Platypus	GT:AD:AF:DP	0/1:27,16:0.37:43
chr3	43642158	.	A	G	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-2.654;QD=15.82;ReadPosRankSum=-3.133;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr3	43756577	rs10662733	C	CTG,CTGTG	1174.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=200;set=Intersection	GT:AF:DP	0/1:0.60:114
chr3	43756644	rs10544015	CTATT	C	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.273;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	44283525	rs9850927	A	G	123.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	44283672	rs9833423	T	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	44283808	rs7645375	C	A	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	44284584	rs9284879	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	44296403	rs4682960	T	C	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	44310592	rs5004668	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	44329394	rs11294162	TG	T	1642.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	44332176	rs1488637	T	C	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	44362408	rs9857957	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	44399668	rs4682970	T	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	44408864	rs372993721	G	GT	582.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	44437870	rs6441838	A	C	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	44488293	rs143141433	T	C	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	44540791	rs36046723	TTC	T	11294.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	44599103	rs2293600	T	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	44612050	rs9873604	C	T	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	44635461	rs13319803	G	A	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	44763037	rs7640654	A	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	44775962	rs4682752	A	G	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	44803108	rs56236286	AAAGACAG	A	9157.73	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:2,346:0.99:348
chr3	44816952	rs10574346	CTT	C,CT	1230.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.350;QD=21.22;ReadPosRankSum=-0.894;SOR=0.560;set=HC	GT:AD:AF:DP	1/2:2,39,17:0.67,0.29:58
chr3	44826315	rs56895721	G	GT	755.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.23;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	44827793	rs7642843	T	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	44840612	rs5848711	A	AT	1975.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	44854563	rs3762636	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	44869026	rs4682999	A	T	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	44882784	rs6766221	C	T	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	44884647	rs3804583	C	A	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	44906746	rs10429	A	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	44938492	.	CT	C	54.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=0.967;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr3	44948491	rs17077022	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:72,51:0.41:123
chr3	44952938	rs2036618	A	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr3	44974434	rs147965604	T	C	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:154,96:0.38:250
chr3	45038455	rs147072512	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr3	45049186	rs11130040	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr3	45052775	rs6794	G	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:112,72:0.39:184
chr3	45068074	rs2301282	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr3	45127515	rs9874077	T	C	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	45130679	rs79885994	G	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr3	45130725	rs7618923	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	45134822	rs3749191	T	C	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	45187671	rs1863837	C	T	11767.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr3	45267310	rs41118	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.94;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	45267321	rs395917	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	45461102	rs11383389	G	GT	7239.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	45500174	rs745551	C	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.68;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	45515648	rs11919039	T	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	45517799	rs3733117	T	C	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	45527099	rs7640603	C	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	45527218	rs7610357	T	C	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	45530401	rs3733116	G	A	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	45533224	rs2128361	G	A	7741.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr3	45542083	rs2306522	T	C	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	45559519	rs2170549	T	C	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	45565554	rs267220	A	G	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	45637830	rs13086458	A	G	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	45677635	rs11379880	C	CT	10491.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	45677637	.	GCA	TGC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=22;MQ=60.0;NF=111;NR=80;PP=2937;QD=20;SC=CTCTTGTCCTGCAAGGAGCCT;SbPval=0.58;Source=Platypus;TC=203;TCF=115;TCR=88;TR=191;WE=45677647;WS=45677627;set=Platypus	GT:AD:AF:DP	1/1:12,191:0.94:203
chr3	45677638	rs5848762	CA	C	10515.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	45715159	rs35737275	CT	C	1127.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	45715688	rs2578679	G	A	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	45715767	rs2742409	G	A	9770.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=24.55;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr3	45746836	rs1969626	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	45748429	rs2742441	G	A	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	45748435	rs2673039	A	G	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	45754487	rs2742369	C	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	45754749	rs2248991	G	A	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	45761115	rs2064062	G	C	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	45763635	rs2673062	A	G	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	45764246	rs2742448	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	45764544	rs2742449	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	45772742	rs2531755	T	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	45772772	rs2673055	G	A	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	45773732	rs11709306	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	45776900	rs1468543	A	G	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	45779136	rs1468542	A	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	45784963	rs9821974	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	45784972	rs10575376	GGT	G	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	45799871	rs2251347	C	T	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	45804391	rs2191027	C	T	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	45817418	rs758386	A	G	9180.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr3	45821624	rs2252547	T	C	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	45821687	rs2276857	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr3	45837886	rs2271615	G	C	4855.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:362,242:0.40:604
chr3	45838013	rs2271616	G	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr3	45977866	rs4535265	C	T	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	45977899	rs1873002	T	C	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	45979877	rs9875616	G	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	45989044	rs2234358	T	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	45996761	rs1463680	G	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	46001063	rs1532071	G	A	5791.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	46007702	rs1994490	T	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	46008790	rs3796375	G	A	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr3	46009864	rs3733100	C	G	5716.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	46010077	rs4683158	C	T	11669.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr3	46016599	rs3821884	T	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	46016851	rs751552	A	T	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	46016944	rs751553	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr3	46021218	rs4682801	G	T	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	46026209	rs11338292	CA	C	2988.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	46026259	rs3733097	G	A	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	46245824	rs371736049	TA	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-1.012;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr3	46400062	rs3092960	G	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,69:0.54:128
chr3	46414943	.	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	6474.73	.	AC=1;AF=0.500;AN=2;DP=349;set=Intersection	GT:AD:AF:DP	0/1:154,172:0.53:326
chr3	46449864	rs6808835	G	T	3148.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:85,139:0.62:224
chr3	46450072	rs6441977	G	A	6059.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:155,271:0.64:426
chr3	46477826	rs56063910	C	T	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.86;ReadPosRankSum=-1.930;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:15,42:0.74:57
chr3	46477830	rs75094754	C	T	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.88;ReadPosRankSum=-1.480;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr3	46479668	rs3213479	A	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr3	46480958	rs2073495	C	G	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=0.958;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:86,44:0.34:130
chr3	46480994	rs55787894	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr3	46482980	rs17285324	A	T	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:134,181:0.57:315
chr3	46484898	rs7615975	T	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	46487775	rs4682816	C	G	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	46487787	rs201856214	TTTGCACCCTTAAAATTA	T	3729.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	46490250	rs1475967	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:72,51:0.41:123
chr3	46490456	rs61737000	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:124,93:0.43:217
chr3	46491267	rs17141154	G	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr3	46495726	rs5848797	CA	C	1859.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:165,74:0.31:239
chr3	46497491	rs73831107	G	A	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=7.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-0.636;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:64,32:0.33:96
chr3	46501213	rs1126478	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr3	46501268	rs1126477	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr3	46501284	rs10662431	C	CCTT	1850.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	46501842	rs4234463	G	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr3	46539523	rs2037391	G	A	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr3	46539864	rs11130092	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	46560630	.	T	C	259.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr3	46593147	rs1879325	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr3	46654132	rs2139637	G	A	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	46658737	rs9832679	A	G	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	46658872	rs9870935	G	T	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	46713351	rs79199647	C	A	4505.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:110,196:0.64:306
chr3	46717931	rs6808525	T	C	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:44,92:0.68:136
chr3	46718298	rs6806400	A	G	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:78,147:0.65:225
chr3	46727909	rs34935085	C	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:66,89:0.57:155
chr3	46728659	rs7633016	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr3	46729289	rs78350137	A	G	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:72,122:0.63:194
chr3	46729757	rs7642448	C	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr3	46730749	rs4076927	A	G	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:86,122:0.59:208
chr3	46742747	rs192733532	G	A	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.24;ReadPosRankSum=0.316;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr3	46742747	.	GC	AA	1092	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=4;HapScore=3;MGOF=28;MMLQ=25;MQ=60.0;NF=24;NR=4;PP=1092;QD=40.9095669594;SC=GAAGGTGGGGGCAGGGAGGGG;SbPval=0.74;Source=Platypus;TC=66;TCF=54;TCR=12;TR=28;WE=46742756;WS=46742737;set=Platypus	GT:AD:AF:DP	1/0:38,28:0.42:66
chr3	46742748	rs184330048	C	A	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=0.582;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr3	46751073	rs10578999	TAAG	T	3801.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:61,97:0.61:158
chr3	46751229	rs56002857	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr3	46753970	rs35759696	C	T	6486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.537;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.20;ReadPosRankSum=-2.375;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:95,173:0.65:268
chr3	46753976	rs9815362	T	C	6266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-1.201;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:90,158:0.64:248
chr3	46755937	rs12492868	C	T	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:49,105:0.68:154
chr3	46759228	rs143449678	A	AAGC	733.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;MQ=60.34;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr3	46761603	rs57987061	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	46775322	rs12489661	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr3	46775383	rs12489663	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr3	46775410	rs12496832	G	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr3	46775608	rs68175547	A	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chr3	46775766	rs56375912	A	G	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:92,124:0.57:216
chr3	46777881	rs6793535	C	G	3739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.67;ReadPosRankSum=1.434;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:64,94:0.59:158
chr3	46777885	rs6808303	T	C	3783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.21;ReadPosRankSum=1.380;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:66,97:0.60:163
chr3	46778008	rs6793661	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr3	46783664	rs112576071	C	CCCAAGG	307.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	46783757	rs57661142	T	G	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr3	46783959	rs58830807	T	C	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,79:0.60:132
chr3	46784133	rs58263848	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr3	46784318	rs60223148	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr3	46784329	rs59859985	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr3	46784352	rs61298367	A	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr3	46784467	rs58943210	G	A	1882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=8.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=0.084;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:59,91:0.61:150
chr3	46784580	rs62246251	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr3	46785355	rs4075012	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr3	46795236	.	T	TG	2683.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.377;MLEAC=1;MLEAF=0.500;MQ=54.64;MQRankSum=-1.697;QD=22.94;ReadPosRankSum=0.425;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:50,67:0.57:117
chr3	46795237	rs76850244	T	C	2692.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr3	46795339	rs377626764	TG	CA	1659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.445;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=9.075;JOINED;MLEAC=1;MLEAF=0.500;MQ=39.99;MQRankSum=-0.741;QD=24.77;ReadPosRankSum=-0.169;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:25,42:0.63:67
chr3	46850942	rs189668768	A	G	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.33;MQRankSum=-0.636;QD=15.89;ReadPosRankSum=-1.261;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:37,72:0.66:109
chr3	46852457	rs75169503	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr3	46852679	rs7647507	A	G	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:88,139:0.61:227
chr3	46852858	rs80252430	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr3	46873658	rs145400769	AG	A	1467.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr3	46873667	rs7624422	C	T	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr3	46875258	rs75324040	A	G	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:101,166:0.62:267
chr3	46900051	rs3729704	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr3	46902129	rs2227294	T	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr3	46904708	rs936175	C	A	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=10.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=1.104;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chr3	46935527	rs724450	G	T	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:55,79:0.59:134
chr3	46982365	rs6804732	T	C	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	47018214	rs936181	T	C	13858.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr3	47021509	rs113932344	CGCGCGCGCGG	C	188.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	47029426	rs1108301	G	A	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	47035625	rs936185	G	A	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	47035900	rs749512	C	T	6507.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	47036756	rs11720139	C	G	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	47038135	rs11396344	C	CA	6185.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	47043386	rs73075647	C	T	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:186,118:0.39:304
chr3	47043622	rs2305635	G	A	5880.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	47044122	rs11928558	A	T	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr3	47103861	.	G	GT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.626;QD=1.21;ReadPosRankSum=0.068;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr3	47129784	rs183862100	A	C	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=5.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=2.011;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:42,65:0.61:107
chr3	47143087	.	A	AGT	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.631;QD=6.09;ReadPosRankSum=-0.922;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:42,23:0.35:65
chr3	47147393	rs374269213	CA	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.422;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:41,25:0.38:66
chr3	47205502	.	CGCGGCG	C	331.73	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr3	47276968	rs2276854	C	T	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr3	47277458	rs1874264	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	47277885	rs13094438	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr3	47282303	rs2276853	G	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr3	47286227	rs6772449	G	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	47287603	rs35871850	A	AT	2250.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	47305928	rs140345125	TTTTTA	T	1159.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr3	47316725	rs903538	G	A	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr3	47318747	rs924009	T	G	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	47322496	rs807936	C	T	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:122,133:0.52:255
chr3	47361082	rs2302278	G	T	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-1.038;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:80,38:0.32:118
chr3	47363971	rs17410853	G	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	47376095	rs295450	A	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	47449058	rs900688	T	C	13060.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr3	47451411	rs3736177	C	T	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,50:0.39:128
chr3	47452087	rs900689	G	A	16003.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr3	47452118	rs6780013	G	A	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:421,269:0.39:690
chr3	47452786	rs1531875	G	A	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:84,92:0.52:176
chr3	47453216	rs11707038	G	A	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:171,136:0.44:307
chr3	47454399	rs6789730	G	A	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.24;SOR=4.814;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	47456225	rs6442066	T	C	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	47459564	rs148152356	CG	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.603;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr3	47459679	rs12487736	C	T	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:82,155:0.65:237
chr3	47462200	rs900690	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	47462587	rs900691	A	G	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	47464122	rs1038394	A	G	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:66,107:0.62:173
chr3	47539751	rs2170814	T	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	47539969	rs13059519	C	T	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr3	47543389	rs3816779	G	A	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:122,136:0.53:258
chr3	47555142	rs2291298	C	A	5117.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:157,233:0.60:390
chr3	47603926	rs11456803	A	AT	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr3	47604299	rs4858839	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	47614413	rs2280567	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr3	47618953	rs3732530	C	A	2187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-2.258;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:172,113:0.40:285
chr3	47651536	rs41290662	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	47676902	.	C	CA	36	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=36;QD=33.5;SC=TCCTTACCTCCACCACTATAA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=2;WE=47676910;WS=47676892;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr3	47680066	rs12633923	C	T	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	47680119	rs12636863	T	C	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:72,38:0.35:110
chr3	47712202	rs1141601	T	C	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:110,55:0.33:165
chr3	47734700	rs12635438	A	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr3	47762030	rs12495204	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr3	47770380	rs6442081	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.853;QD=3.98;ReadPosRankSum=-0.445;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr3	47807196	rs116026916	T	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chr3	47814192	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.70;ReadPosRankSum=0.124;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	47860864	rs78273381	G	C	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr3	47891744	rs10537180	CAA	C	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	47894881	rs67063081	CGAG	C	638.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr3	47932633	.	T	A	1965.77	.	AC=1;AF=0.500;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	0/1:77,90:0.54:167
chr3	47953405	rs4858871	A	C	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:82,143:0.64:225
chr3	47953733	rs34025851	C	A	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:81,121:0.60:202
chr3	47956424	rs1137524	C	T	4374.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:130,195:0.60:325
chr3	47956506	rs11707679	T	C	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:81,116:0.59:197
chr3	47958037	rs1060407	G	T	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:100,194:0.66:294
chr3	48019232	rs6770467	A	G	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr3	48019258	rs6770477	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	48206102	rs3731555	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr3	48209486	rs3731539	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	48219320	rs3731514	AAC	A	15809.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.180;QD=33.21;ReadPosRankSum=-0.003;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:2,474:1.00:476
chr3	48219537	rs3731513	A	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr3	48225509	rs3731503	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr3	48282494	rs9830016	T	C	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:47,77:0.62:124
chr3	48282651	rs35806621	TGCGC	T	5236.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:80,133:0.62:213
chr3	48282695	rs9847953	A	G	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:62,91:0.59:153
chr3	48299439	rs6787500	T	C	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr3	48309828	rs11718329	C	G	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:98,145:0.60:243
chr3	48327729	rs9853804	T	C	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,64:0.59:109
chr3	48327751	rs9834095	G	A	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:59,107:0.64:166
chr3	48338173	rs4479622	C	T	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:29,73:0.72:102
chr3	48340045	rs13085251	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr3	48342669	rs34523942	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr3	48342882	rs35297395	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr3	48348564	rs79089926	A	C	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:73,120:0.62:193
chr3	48351560	rs6793150	G	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=-1.235;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	48360992	rs11718350	T	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:59,97:0.62:156
chr3	48362369	rs7645425	A	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	48414197	rs9852211	A	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	48414215	rs9815103	G	A	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:37,62:0.63:99
chr3	48415007	rs4858793	C	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr3	48416756	rs4858817	A	G	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	48419723	rs7630741	G	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr3	48419897	rs6442117	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr3	48422235	rs6784322	T	A	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:34,84:0.71:118
chr3	48422512	.	GTT	G	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.228;QD=10.29;ReadPosRankSum=0.047;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	48450706	rs3217706	TC	T	559.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr3	48451300	rs3214871	AG	A	2933.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:46,93:0.67:139
chr3	48454468	rs3214041	C	T	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:132,192:0.59:324
chr3	48455626	rs6794875	A	G	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr3	48461313	rs2362450	C	G	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-0.928;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:43,54:0.56:97
chr3	48462461	rs11130171	A	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr3	48463618	rs9883759	T	A	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:80,125:0.61:205
chr3	48463711	rs9883927	T	C	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:67,98:0.59:165
chr3	48474249	rs2279077	A	G	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:83,110:0.57:193
chr3	48475353	rs149306159	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:108,57:0.35:165
chr3	48476431	rs13062723	C	G	8334.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	48481647	rs3774808	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.942;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr3	48488192	rs72622933	G	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr3	48491350	rs377674597	GA	G	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.226;QD=3.17;ReadPosRankSum=0.766;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr3	48491995	.	A	AT	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.930;QD=3.87;ReadPosRankSum=0.445;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr3	48505302	rs6442124	A	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=1.923;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	48505964	rs2242150	C	A	1795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=1.277;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:59,86:0.59:145
chr3	48508585	rs11797	C	T	8250.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:217,358:0.62:575
chr3	48515079	rs4858795	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr3	48576483	rs7615170	C	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	48593341	.	T	TA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=8.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.291;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr3	48602523	rs138595277	G	GGGC	6156.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:5,227:0.98:232
chr3	48625266	rs1264194	T	C	4174.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:112,195:0.64:307
chr3	48665527	rs370274399	A	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr3	48681765	rs147930066	CAG	C	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.959;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.072;QD=3.07;ReadPosRankSum=0.782;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr3	48701509	.	C	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.238;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:280,59:0.17:339
chr3	48716536	rs75577765	GC	AA	6128.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;JOINED;set=Intersection	GT:AD:AF:DP	0/1:86,155:0.64:241
chr3	48719638	rs7633840	T	C	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	48723302	rs6792510	G	C	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	48727112	rs4858798	G	A	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	48731961	rs72929172	A	G	8573.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr3	48831587	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=2.546;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr3	48845251	rs9311430	C	T	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	48897078	rs6414612	A	G	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	48916980	rs74673105	A	C	2584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.877;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=10.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-0.503;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:72,118:0.62:190
chr3	48982732	rs9864243	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	48986399	rs13315711	A	T	10547.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr3	48986546	rs371516194	CATTTATTT	C	2552.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	49004723	rs6446196	A	G	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	49044767	rs6781790	C	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	49048534	.	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.373;QD=3.28;ReadPosRankSum=-0.872;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr3	49051613	rs115620887	C	T	5688.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:143,247:0.63:390
chr3	49053219	rs7100	A	G	8360.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr3	49054692	rs3087866	T	C	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	49069790	rs200656406	GCCAGC	G	1717.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=5.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.494;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:102,50:0.33:152
chr3	49070499	rs4974081	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	49114544	rs7626445	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	49133310	rs9840050	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.49;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	49135961	rs13064784	C	G	12030.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr3	49137904	rs4521268	G	T	11082.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	49139966	rs4513485	G	A	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	49145741	rs3212	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	49148890	rs4292260	T	C	29713.77	.	AC=2;AF=1.00;AN=2;DB;DP=1089;set=Intersection	GT:AD:AF:DP	1/1:0,1088:1.00:1088
chr3	49162769	.	G	T	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DP=514;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.883;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:406,104:0.20:510
chr3	49166069	rs9865051	C	T	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	49169782	rs79448908	G	A	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:239,108:0.31:347
chr3	49200627	rs4955418	A	G	23280.77	.	AC=2;AF=1.00;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	1/1:1,885:1.00:886
chr3	49200692	rs4955419	T	A	28190.77	.	AC=2;AF=1.00;AN=2;DB;DP=1035;set=Intersection	GT:AD:AF:DP	1/1:1,1030:1.00:1031
chr3	49201691	.	C	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-2.066;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:181,42:0.19:223
chr3	49210732	rs7617480	A	C	311.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.982;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.98;ReadPosRankSum=-0.223;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr3	49211989	rs10865954	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	49215039	.	G	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.051;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:140,40:0.22:180
chr3	49249381	rs9867285	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	49269758	rs2099526	G	T	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	49273996	rs12631989	C	T	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	49298139	rs7626076	G	A	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	49298205	rs4955417	T	C	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	49308804	rs150162031	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:99,48:0.33:147
chr3	49349907	.	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=1.207;QD=4.06;ReadPosRankSum=-0.000;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	49354975	rs71077785	GT	G	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.986;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.771;QD=6.05;ReadPosRankSum=0.173;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr3	49365269	rs6795772	C	T	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	49372852	rs41290702	A	G	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:102,158:0.61:260
chr3	49395673	rs17838762	GGCCGCC	G	798.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	49397900	rs200617234	A	AT	86.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	49406080	rs2878298	T	C	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=27.00;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	49459114	rs4855873	A	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	49459376	rs1464566	T	C	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.51;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	49463926	rs6762593	A	G	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	49463962	rs113679342	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.059;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr3	49548008	rs2131107	C	G	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	49548225	rs145403829	G	C	1581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.469;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:162,86:0.35:248
chr3	49548294	rs2329024	T	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	49568095	rs2311801	G	A	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	49570882	rs1050088	T	C	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	49690199	rs4855885	G	A	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	49691675	rs75625777	A	G	6788.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:216,313:0.59:529
chr3	49698115	rs116113662	G	A	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:97,157:0.62:254
chr3	49701298	rs2005557	G	A	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	49713753	rs6778597	T	C	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	49720393	rs2960548	C	G	15290.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr3	49723726	rs3038471	GC	G	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=0.282;QD=14.77;ReadPosRankSum=0.709;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr3	49723784	rs9713651	C	A	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:16,80:0.83:96
chr3	49723823	rs7431215	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=15.525;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-7.233;QD=1.49;ReadPosRankSum=2.370;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:100,21:0.17:121
chr3	49724014	rs62262684	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr3	49724048	rs10711993	TC	T	91.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr3	49724808	rs3020779	T	C	7125.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	49725432	rs11309936	AG	A	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	49725948	rs141881740	C	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr3	49726028	rs62262685	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-7.011;QD=3.14;ReadPosRankSum=0.802;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr3	49736565	rs6785549	G	A	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	49739086	rs1491986	C	T	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	49739507	rs1491985	G	C	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	49744392	rs3749241	A	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	49750188	rs3749240	T	A	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	49753003	rs34614773	T	G	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	49753788	rs11720705	A	G	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	49760039	rs1466685	T	C	9539.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr3	49785133	rs7374183	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	49928691	rs7433231	T	C	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	49935526	rs35986685	T	G	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:137,98:0.42:235
chr3	49940812	rs56204949	G	T	4049.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:456,214:0.32:670
chr3	50091941	.	C	CT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.863;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr3	50095103	.	CTT	C	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.777;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr3	50108192	rs147725436	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	50114315	rs199553129	TA	T	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.038;QD=5.21;ReadPosRankSum=-0.389;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	50114515	rs7061	C	T	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	50129374	rs5848907	T	TA	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	50129399	rs2013208	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	50144951	rs1061474	T	C	5961.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	50148305	rs2301166	C	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	50153356	rs1138536	T	C	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	50155887	rs112672304	TGA	T	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.259;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.147;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:95,22:0.19:117
chr3	50197097	rs1046953	C	T	13532.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr3	50222926	rs1046956	T	A	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	50223593	rs2073726	T	A	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	50223977	rs11717349	C	T	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	50224225	rs12632110	A	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	50225029	rs11711407	A	G	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	50225607	rs148259784	G	GAT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.91;ReadPosRankSum=1.347;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	50251833	rs5848902	A	AG	5810.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	50306752	rs67324803	G	GC	1989.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	50308718	rs4688739	A	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	50339381	.	C	CA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=8.049;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.424;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr3	50402263	rs41304866	C	T	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:88,127:0.59:215
chr3	50412324	rs141683679	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr3	50540895	.	TGGC	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=5.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.196;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	50597092	rs1034405	G	A	7687.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr3	50609123	rs636168	T	C	5870.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	50609624	rs2232248	T	G	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	50645635	rs621975	T	G	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	50645793	rs622502	C	G	8159.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr3	50678001	rs608961	C	T	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	50683809	rs876105	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	50684489	rs4468971	A	G	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	50685574	rs35676349	CA	C	264.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	51246360	rs4301044	A	G	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	51266880	.	T	TA	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.136;QD=5.48;ReadPosRankSum=0.465;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:53,38:0.42:91
chr3	51273711	rs1480362	A	G	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	51273773	rs1480361	T	C	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	51274902	rs11386090	T	TA	3206.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:76,104:0.58:180
chr3	51375985	rs114008344	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr3	51393706	rs35251332	C	CAG	3422.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	51395571	rs1542574	C	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	51418348	rs2241784	G	A	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	51422766	rs13091931	G	T	1375.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	51460010	rs62257541	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	51468970	rs5848921	C	CA	64.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=9.031;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.02;ReadPosRankSum=-0.157;SOR=4.163;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr3	51469107	rs4611808	C	T	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	51469721	.	CA	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.61;ReadPosRankSum=0.167;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	51469963	.	G	A	2092.77	.	AC=1;AF=0.500;AN=2;DP=197;set=Intersection	GT:AD:AF:DP	0/1:91,103:0.53:194
chr3	51471278	rs71633071	C	CA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=1.788;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	51501089	rs143173240	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	51517625	.	T	TTG	339.73	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr3	51697493	rs904145	A	G	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	51812952	rs11130296	C	T	8399.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr3	51895850	rs986539	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	51907736	rs7635409	A	G	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	51908226	rs1505403	T	C	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	51908430	rs6794320	T	C	9054.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr3	51911103	rs201734789	TTTTTC	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=56;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=0.480;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr3	51911118	rs3036712	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.86;ReadPosRankSum=-1.884;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	51929360	rs34574240	GA	G	1847.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	51936949	rs7635125	T	C	10285.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr3	51978220	rs28547534	A	G	9826.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:2,365:0.99:367
chr3	51978772	rs151156865	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr3	51990119	rs28587738	A	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	51990315	rs28651222	A	G	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	51990646	rs73082754	C	A	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:150,177:0.54:327
chr3	52012320	rs41292350	G	A	2853.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:104,137:0.57:241
chr3	52232979	rs3216487	A	ATTTAC	3639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=3.234;QD=13.05;ReadPosRankSum=1.096;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:176,103:0.37:279
chr3	52233295	rs35338461	G	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:110,57:0.34:167
chr3	52236800	rs149960347	T	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr3	52238656	rs352167	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr3	52238677	rs352166	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr3	52242103	rs144166227	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr3	52255744	rs5743845	C	T	4980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.221;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:383,264:0.41:647
chr3	52256805	rs35342983	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:101,43:0.30:144
chr3	52257183	rs35654187	C	T	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:136,108:0.44:244
chr3	52258372	rs352139	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	52263622	rs147881772	A	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:77,50:0.39:127
chr3	52264907	rs352143	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:97,51:0.34:148
chr3	52272945	rs11441245	C	CG	356.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr3	52279951	rs114645176	T	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:86,58:0.40:144
chr3	52293312	rs55847657	C	G	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:266,194:0.42:460
chr3	52321202	rs144890460	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=1.799;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr3	52325759	rs2276834	A	G	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:143,100:0.41:243
chr3	52360318	rs61729450	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:87,51:0.37:138
chr3	52360362	rs199966822	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr3	52365149	rs143657729	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:76,32:0.30:108
chr3	52366368	rs61729402	A	G	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:194,111:0.36:305
chr3	52366426	rs190176840	G	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:81,47:0.37:128
chr3	52379420	rs11718125	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr3	52381865	rs61734653	A	G	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:199,104:0.34:303
chr3	52384455	rs140143314	G	A	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:155,104:0.40:259
chr3	52385992	rs61734643	A	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:118,78:0.40:196
chr3	52387078	rs35860312	T	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr3	52387181	rs140275399	G	A	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:251,107:0.30:358
chr3	52391735	rs11714402	A	C	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:152,87:0.36:239
chr3	52392750	rs61739897	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr3	52396577	rs143342635	G	A	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:215,100:0.32:315
chr3	52409783	rs148066970	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr3	52415865	rs770284	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	52417353	rs150888531	T	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:62,40:0.39:102
chr3	52417638	rs28481563	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr3	52417991	rs61749019	G	A	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:97,67:0.41:164
chr3	52422060	rs138945795	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:83,64:0.44:147
chr3	52426989	rs148913561	T	C	1655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-1.478;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:271,105:0.28:376
chr3	52429539	rs186185022	T	C	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:140,87:0.38:227
chr3	52430698	rs365048	A	G	9554.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr3	52431671	rs390802	G	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:79,44:0.36:123
chr3	52431709	rs141567808	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:122,75:0.38:197
chr3	52433151	rs61734637	A	T	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:126,87:0.41:213
chr3	52433413	rs150996974	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	52436917	rs146661777	C	G	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:130,103:0.44:233
chr3	52439240	rs28997577	T	C	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.659;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:54,30:0.36:84
chr3	52440418	rs139414598	A	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:67,34:0.34:101
chr3	52448085	rs145451027	T	G	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.467;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr3	52448090	rs138052405	G	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=0.498;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr3	52453893	rs498778	C	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	52454214	rs145672718	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr3	52454268	rs151068971	A	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:60,18:0.23:78
chr3	52456158	rs147159843	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr3	52456471	rs150677646	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr3	52456652	rs143930518	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr3	52456758	rs146882589	C	T	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:130,76:0.37:206
chr3	52456833	rs35491443	C	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:115,53:0.32:168
chr3	52457103	rs201539522	C	CCA	787.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,24:0.29:84
chr3	52457282	rs145224435	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:86,35:0.29:121
chr3	52471930	rs140949459	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr3	52471942	rs82825	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr3	52472852	rs138947564	G	A	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr3	52474480	rs111301698	A	G	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:185,93:0.33:278
chr3	52475117	rs149877430	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:64,21:0.25:85
chr3	52477080	rs2016575	T	C	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:97,142:0.59:239
chr3	52478741	.	ACGG	A	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.87;MQRankSum=1.470;QD=31.30;ReadPosRankSum=0.000;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr3	52478743	.	G	A	21	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=19;MQ=57.09;NF=2;NR=1;PP=21;QD=18.5904041824;SC=ACACAAACACGGCACACGCAA;SbPval=0.76;Source=Platypus;TC=13;TCF=8;TCR=5;TR=3;WE=52478751;WS=52478737;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr3	52478746	.	ACACGCAAACTCGGCACACGCACACAAACTCGGCACACGCACACAAACACTGCACATGCACACAAACACG	A	630.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=61.25;MQRankSum=3.910;QD=13.71;ReadPosRankSum=0.541;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr3	52478783	.	CGCACACAAACACTGCACAT	C	1282	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=20;MQ=60.75;NF=6;NR=6;PP=1282;QD=109.166666667;SC=ACTCGGCACACGCACACAAAC;SbPval=0.41;Source=Platypus;TC=33;TCF=19;TCR=14;TR=12;WE=52478823;WS=52478773;set=Platypus	GT:AD:AF:DP	1/0:21,12:0.36:33
chr3	52478815	.	G	A	1204	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=18;MQ=61.05;NF=15;NR=6;PP=1204;QD=58.9891053594;SC=ACACAAACACGGCACACGCAC;SbPval=0.62;Source=Platypus;TC=50;TCF=35;TCR=15;TR=21;WE=52478823;WS=52478773;set=Platypus	GT:AD:AF:DP	1/0:29,21:0.42:50
chr3	52478874	.	C	T	1660.77	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:65,46:0.41:111
chr3	52478914	rs114942616	C	T	1989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.353;QD=15.79;ReadPosRankSum=-0.652;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:65,61:0.48:126
chr3	52486376	rs138757305	T	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:69,32:0.32:101
chr3	52486681	rs141880897	A	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr3	52488202	rs1035002	C	T	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	52489557	.	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=1.291;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr3	52489564	rs968588	A	T	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.51;SOR=6.138;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	52492085	rs4687614	G	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	52492707	rs1541495	T	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr3	52505758	rs3065763	G	GAT	3177.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	52506282	rs4312651	A	G	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	52506426	rs6784615	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr3	52506491	rs6445486	A	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	52510592	rs9856575	G	A	8027.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr3	52512318	rs2109559	A	G	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:21,67:0.76:88
chr3	52513672	.	CTCACCAGTCCCCATGCTGATAGCCA	C	1032.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=4.062;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.566;QD=9.47;ReadPosRankSum=1.215;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:78,31:0.28:109
chr3	52513940	rs4687618	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	52514844	rs139635534	C	T	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:262,167:0.39:429
chr3	52518786	rs4687619	T	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	52522591	rs61736838	C	T	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:162,110:0.40:272
chr3	52523405	rs887515	C	T	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr3	52524827	rs41292366	C	T	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:96,79:0.45:175
chr3	52524974	rs4687621	A	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	52526577	rs144833808	T	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr3	52535766	rs138055453	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr3	52536308	rs758801	A	C	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	52536664	rs140965743	C	T	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=0.945;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:138,86:0.38:224
chr3	52537170	rs148910759	G	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.219;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=2.105;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr3	52537249	rs143438936	A	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr3	52537969	rs4687545	T	C	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.533;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	52538331	rs192695654	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:127,63:0.33:190
chr3	52538367	rs183616935	A	C	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:222,128:0.37:350
chr3	52538432	rs143987325	A	G	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:350,217:0.38:567
chr3	52539677	rs111466273	A	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,70:0.45:156
chr3	52539880	rs112434533	CCT	C	3156.73	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:152,96:0.39:248
chr3	52540773	rs1010553	T	C	9579.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr3	52540809	rs141322414	G	A	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:273,223:0.45:496
chr3	52541424	rs41292370	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr3	52544470	rs9835659	A	G	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	52546487	rs7644763	C	T	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	52546872	rs150311081	G	A	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:129,71:0.35:200
chr3	52547411	rs149401529	G	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	52548136	rs74491782	T	C	3428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=2.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.991;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:273,190:0.41:463
chr3	52548238	rs76496037	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:97,82:0.46:179
chr3	52549388	rs112896975	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:64,40:0.38:104
chr3	52551284	rs67409736	G	T	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=1.996;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:80,54:0.40:134
chr3	52552922	.	C	CCCCGCCCCGCCCCGT	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=1.007;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr3	52554304	rs7630214	G	C	16770.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr3	52555316	rs13081028	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr3	52555957	rs9853056	T	C	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:173,127:0.42:300
chr3	52557174	rs148370390	G	A	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:143,131:0.48:274
chr3	52558008	rs13303	T	C	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:155,135:0.47:290
chr3	52558133	rs13621	T	C	7062.77	.	AC=1;AF=0.500;AN=2;DB;DP=903;set=Intersection	GT:AD:AF:DP	0/1:529,369:0.41:898
chr3	52558480	rs181171122	G	A	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:192,109:0.36:301
chr3	52559042	rs143799471	C	T	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:150,90:0.38:240
chr3	52559167	.	CGGG	C,CG	1881.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=17.076;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.21;SOR=7.864;set=HC	GT:AD:AF:DP	1/2:2,30,23:0.55,0.42:55
chr3	52561441	rs59410274	G	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:106,66:0.38:172
chr3	52561779	rs11711421	C	T	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:187,116:0.38:303
chr3	52562819	rs111943011	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:102,48:0.32:150
chr3	52567617	rs66782572	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr3	52584431	rs34372721	T	TCTC	758.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr3	52584715	rs2878628	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:75,38:0.34:113
chr3	52584787	rs2251219	T	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=1.407;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr3	52596064	rs189133265	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr3	52610790	rs139817169	A	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr3	52621627	rs3733046	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	52637468	rs183481725	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	52637486	rs2276824	C	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	52637631	rs34341044	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr3	52643307	rs3733045	A	G	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=1.310;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr3	52643685	rs3755806	T	C	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:160,108:0.40:268
chr3	52658750	rs78561615	T	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr3	52659124	rs34215106	T	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr3	52676065	rs11719685	C	T	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.077;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:125,41:0.25:166
chr3	52676079	rs200167093	G	A	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=7.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-1.189;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:84,70:0.45:154
chr3	52692124	rs2336149	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr3	52692359	rs2590846	C	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr3	52720080	rs1108842	A	C	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:215,143:0.40:358
chr3	52722266	rs3836492	AT	A	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.415;QD=4.16;ReadPosRankSum=0.246;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chr3	52722335	rs3774349	A	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr3	52724578	rs145507302	C	T	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.007;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:37,31:0.46:68
chr3	52727257	rs2289247	G	A	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:151,106:0.41:257
chr3	52727953	rs149900807	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr3	52731900	.	G	A	674.77	.	AC=1;AF=0.500;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	0/1:100,44:0.31:144
chr3	52740182	rs6617	C	G	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.765;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=2.165;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:233,75:0.24:308
chr3	52740920	rs138538919	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr3	52741581	rs34636695	AT	A	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.681;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr3	52778347	rs2268026	T	C	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:103,69:0.40:172
chr3	52780239	rs186429523	A	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr3	52800284	rs2230535	T	C	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:129,116:0.47:245
chr3	52802402	rs2230534	A	C	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.049;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:117,78:0.40:195
chr3	52804487	rs13071584	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:85,54:0.39:139
chr3	52814256	rs2302417	T	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.643;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr3	52815905	rs2710323	T	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr3	52820251	rs139492471	C	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr3	52820855	.	C	CGAAT	374.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	52821011	rs1042779	A	G	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:93,52:0.36:145
chr3	52830764	rs2240921	C	T	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=0.203;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:139,77:0.36:216
chr3	52831916	rs34352685	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=0.041;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr3	52832870	rs9831540	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr3	52832940	rs117689634	C	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:88,68:0.44:156
chr3	52833219	rs2535629	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr3	52833540	rs28463071	T	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr3	52833805	rs3617	C	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-2.002;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr3	52834753	rs2710333	A	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr3	52836340	rs2710338	C	T	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:109,72:0.40:181
chr3	52836667	rs140198960	T	C	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-3.428;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:145,89:0.38:234
chr3	52837793	rs4481150	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr3	52838654	rs9968117	C	T	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.733;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:77,47:0.38:124
chr3	52839956	rs72954395	G	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr3	52839972	rs72954399	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,38:0.35:110
chr3	52840019	rs147311825	AAGGGG	A	1636.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:82,47:0.36:129
chr3	52841160	rs2276813	G	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	52841772	rs148156289	G	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:100,58:0.37:158
chr3	52842564	rs3815421	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr3	52847601	rs2071044	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr3	52847937	rs13322530	G	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr3	52847984	rs2276811	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr3	52848037	rs151083454	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:92,42:0.31:134
chr3	52848207	rs77347777	C	T	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:91,132:0.59:223
chr3	52851137	rs2240917	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr3	52852200	.	C	T	1330.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,62:0.61:102
chr3	52853340	rs7620907	G	C	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	52853401	rs3821831	C	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:50,81:0.62:131
chr3	52854140	rs9831977	T	G	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr3	52857778	rs34860124	T	A	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:86,64:0.43:150
chr3	52864584	rs2071042	A	G	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:295,175:0.37:470
chr3	52864635	rs2276818	A	G	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:203,103:0.34:306
chr3	52867220	rs113621941	G	A	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:58,87:0.60:145
chr3	52867288	rs4687661	A	T	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	52867595	rs60332615	C	A	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:55,110:0.67:165
chr3	52867715	rs6787916	G	C	7451.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	52867811	rs6776876	A	T	6830.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	52868610	rs11922961	T	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr3	52868668	rs142854055	G	GCACACA,GCACACACA	4527.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=128;set=Intersection	GT:AF:DP	1/2:0.58,0.41:112
chr3	52868670	rs62255421	G	A	5480.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;MQRankSum=0.000;QD=43.16;ReadPosRankSum=0.464;SOR=0.555;set=HC	GT:AD:AF:DP	1/1:1,126:0.99:127
chr3	52868692	.	A	ACACACACC	2811	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=2;MGOF=36;MMLQ=27;MQ=58.56;NF=46;NR=108;PP=2811;QD=20;SC=ACACACACACAGGCACATGCA;SbPval=0.67;Source=Platypus;TC=206;TCF=67;TCR=139;TR=154;WE=52868700;WS=52868682;set=Platypus	GT:AD:AF:DP	1/0:52,154:0.75:206
chr3	52868716	rs77032405	GC	G	5520.73	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:122,221:0.64:343
chr3	52870729	rs11431693	C	CA	4926.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=36.77;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	52874446	rs6769789	C	T	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr3	52874716	rs374916394	GTT	G	412.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=1.223;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr3	52874753	rs56019197	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	52874779	rs7638431	G	A	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	52877647	rs55829187	C	CA	3941.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	52877649	rs56008508	G	A	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	52877720	rs4687668	T	C	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	52878721	rs7650966	G	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	52878746	rs10663469	C	CAG	1789.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	52878825	rs7629528	C	A	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	52881634	rs5848962	T	TG	2519.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	52883654	rs3216716	CT	C	2021.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	52886914	rs4687675	A	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	52950372	.	CTT	C	62.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=12.50;ReadPosRankSum=-1.282;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr3	52952433	rs3733034	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	52960013	rs11360013	GC	G	3371.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	52960256	rs34584015	AG	A	3988.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	52960261	rs34585187	C	A	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	52968726	rs2257216	T	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr3	52968801	rs2710315	T	C	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	53003021	rs2245424	G	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr3	53003179	rs11717619	A	C	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:184,120:0.39:304
chr3	53126672	rs141077598	TTGCCCTGGACAAGGC	T	1447.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr3	53154132	rs373476566	ATTAACT	A	115.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.050;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.86;ReadPosRankSum=-1.437;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr3	53154139	rs199819350	GCACT	G	118.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.84;ReadPosRankSum=-2.450;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	53154143	.	T	G	211	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=211;QD=81.9237375157;SC=TTAACTGCACTTTCTATTCAG;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=3;WE=53154151;WS=53154122;set=Platypus	GT:AD:AF:DP	1/0:4,3:0.43:7
chr3	53212383	rs2306570	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr3	53212574	rs2306571	C	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr3	53212716	rs17052826	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	53213538	rs2035451	C	G	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	53213657	rs2230493	T	C	3912.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:156,193:0.55:349
chr3	53213815	rs3830263	C	CGTGT	361.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr3	53215875	rs11130350	A	C	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:163,81:0.33:244
chr3	53216051	rs6445568	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	53220444	rs6793352	T	C	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	53222761	rs2306574	C	T	8148.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr3	53223291	rs7630600	T	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=2.140;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	53223927	rs1075865	C	G	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	53224002	rs900495	T	C	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	53259850	rs3163	C	T	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:220,134:0.38:354
chr3	53259996	rs3816767	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr3	53260716	rs2279322	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr3	53260903	rs2279323	G	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,42:0.36:118
chr3	53261019	rs41275535	C	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr3	53262400	rs3736153	G	C	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.598;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:100,53:0.35:153
chr3	53262472	rs3736154	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr3	53263279	rs3736156	A	G	8040.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr3	53264485	rs1131728	A	G	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:101,69:0.41:170
chr3	53265581	rs17234092	C	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr3	53267100	rs2242300	C	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr3	53267133	rs6445573	G	C	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	53267155	rs2242301	G	A	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:70,92:0.57:162
chr3	53267296	rs2242302	G	A	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:114,84:0.42:198
chr3	53267342	rs2242303	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,47:0.39:119
chr3	53269046	rs1051485	T	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:125,78:0.38:203
chr3	53269163	rs1051483	G	A	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:133,111:0.45:244
chr3	53269275	rs2242304	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr3	53274986	rs62255989	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	53321631	rs9628	A	C	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:56,139:0.71:195
chr3	53324819	rs201612547	ATGGCAC	A	2061.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	53324915	rs3732834	A	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	53376366	.	GTACTT	G	352.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	53529013	.	T	A	270	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.9903;HP=9;HapScore=2;MGOF=25;MMLQ=24;MQ=58.08;NF=15;NR=1;PP=270;QD=19.0482007842;SC=GTTTTTTTTTTAAATCAATTA;SbPval=0.52;Source=Platypus;TC=22;TCF=21;TCR=1;TR=16;WE=53529021;WS=53529003;set=Platypus	GT:AD:AF:DP	1/0:6,16:0.73:22
chr3	53529140	rs312480	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=26.62;SOR=1.725;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	53685039	rs2276836	T	C	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr3	53700550	rs2250736	T	C	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:61,109:0.64:170
chr3	53707589	rs10707009	GA	G	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.830;QD=5.84;ReadPosRankSum=-0.862;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr3	53766026	rs2612033	T	C	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:82,139:0.63:221
chr3	53766212	rs2306866	A	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	53769479	rs1045958	C	T	6477.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:209,304:0.59:513
chr3	53776995	rs2612026	T	C	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:37,77:0.68:114
chr3	53778620	rs28365115	C	G	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.86;ReadPosRankSum=1.353;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr3	53779825	rs3821860	A	G	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:86,123:0.59:209
chr3	53796744	rs3774567	T	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr3	53806803	rs2278517	G	C	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:33,103:0.76:136
chr3	53814197	rs1829423	G	A	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:37,66:0.64:103
chr3	53837619	rs56382996	G	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr3	53837662	rs58252138	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr3	53845295	rs10154841	C	T	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	53857803	rs12676	A	C	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	53857917	rs9001	T	G	3154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-2.030;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:122,152:0.55:274
chr3	53880789	rs2232332	A	G	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	53882663	rs1025690	G	A	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	53882673	rs5849009	G	GT	6418.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	53883722	rs1025689	C	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.884;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr3	53883910	rs4687751	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.625;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr3	53886912	rs3733075	C	T	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-1.749;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:148,94:0.39:242
chr3	53890787	rs3821867	G	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr3	53891097	rs2276840	C	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr3	53892553	rs13315972	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr3	53892641	rs9840079	T	G	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.341;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr3	53905308	rs1046677	T	C	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:113,60:0.35:173
chr3	53906513	rs4687757	G	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr3	53906663	rs2289203	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.485;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-2.227;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	53906951	rs12632292	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	53910109	.	T	TG	2507	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=8;HapScore=1;MGOF=5;MMLQ=22;MQ=60.0;NF=0;NR=41;PP=2507;QD=20;SC=CCACAATCCCTGGGGGGGGAA;SbPval=1.0;Source=Platypus;TC=138;TCF=7;TCR=131;TR=41;WE=53910129;WS=53910099;set=Platypus	GT:AD:AF:DP	0/1:97,41:0.30:138
chr3	53910118	rs744277	A	G	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.449;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:117,51:0.30:168
chr3	53910121	rs5849012	AG	A	885.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.109;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:112,51:0.31:163
chr3	53910899	rs5849013	GA	G	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-1.490;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr3	53910919	rs11419180	G	GT	585.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.89;ReadPosRankSum=0.363;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr3	53911540	rs3733079	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	53912341	rs3733081	C	A	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-2.008;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:78,49:0.39:127
chr3	53915930	rs2276843	C	T	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.287;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=0.080;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr3	53915937	rs2276844	T	A	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.338;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.544;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr3	53916130	rs2276845	A	G	3830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=1.303;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:333,206:0.38:539
chr3	53921022	rs1020082	T	C	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-1.025;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr3	53921028	rs10440151	T	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-1.530;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr3	53922620	rs3816144	A	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:101,58:0.36:159
chr3	54157710	rs2290132	A	T	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	54354431	rs41277447	G	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:109,63:0.37:172
chr3	54354510	rs9879885	T	C	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	54420721	rs3028846	GT	G	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=1.85;ReadPosRankSum=2.168;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:57,29:0.34:86
chr3	54604188	rs2251788	T	C	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	54615971	rs6782115	A	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=0.446;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr3	54676441	rs3832224	CA	C	643.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	54786803	rs73074112	A	G	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.290;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:22,26:0.54:48
chr3	54786864	rs34310780	G	GT	161.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.70;ReadPosRankSum=0.792;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr3	54798258	rs3732748	G	A	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	54913354	rs35536476	CT	C	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.363;QD=3.80;ReadPosRankSum=-0.017;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr3	54919272	rs1405330	A	G	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	54919351	rs10510774	A	G	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:136,188:0.58:324
chr3	54928487	rs58625954	G	A	3999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.24;ReadPosRankSum=-0.442;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:64,101:0.61:165
chr3	54928489	rs58346602	A	T	3999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.81;ReadPosRankSum=-0.672;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:65,103:0.61:168
chr3	54928496	rs1526595	T	C	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	54930640	rs79621910	C	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr3	54930773	rs17253119	A	G	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=0.488;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:59,91:0.61:150
chr3	54934054	rs17253231	A	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr3	54961949	rs4245920	C	T	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	54962013	rs56327704	A	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr3	55003733	rs881820	G	T	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	55003992	rs113492437	T	TA	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	55038898	rs4955827	A	G	4379.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.92;ReadPosRankSum=-0.795;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:2,167:0.99:169
chr3	55038998	rs56926640	TA	T	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.243;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	55041696	rs17321866	T	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr3	55108055	rs358076	G	A	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	55989276	rs140781604	TTGTGTGTGTGTG	T,TTGTGTGTGTGTGTGTG	1441.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.04;ReadPosRankSum=-1.663;SOR=1.280;set=HC	GT:AD:AF:DP	1/2:3,22,23:0.46,0.48:48
chr3	56019805	rs6806267	T	C	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	56019905	rs6445762	C	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr3	56020084	.	G	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=2.359;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:89,19:0.18:108
chr3	56020159	rs7613818	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr3	56026034	rs4974160	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr3	56037025	rs5849124	C	CAT	3216.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:49,78:0.61:127
chr3	56037241	rs35658351	CA	C	3192.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	56037249	rs34984094	A	AG	3117.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	56041187	rs1379715	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	56114750	rs17825159	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr3	56330063	rs75898504	T	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr3	56591178	rs73079891	A	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr3	56591278	rs150150392	T	TGGGGTAAGCA	3586.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:3,79:0.96:82
chr3	56593543	rs12486047	C	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	56593680	rs11130525	T	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	56597688	rs6781293	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr3	56597954	rs6769055	C	T	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	56599159	rs73081810	T	C	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.901;QD=12.03;ReadPosRankSum=1.277;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:41,53:0.56:94
chr3	56599208	rs55831745	G	C	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.839;QD=14.32;ReadPosRankSum=0.362;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:24,37:0.61:61
chr3	56599258	rs10687224	G	GTATT	1111.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	56601175	rs112310084	T	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr3	56605404	.	T	TA	51	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=11;HapScore=2;MGOF=13;MMLQ=22;MQ=60.0;NF=0;NR=6;PP=51;QD=10.0;SC=TAAAGCTTATTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=6;WE=56605412;WS=56605394;set=Platypus	GT:AD:AF:DP	1/1:3,6:0.67:9
chr3	56627048	rs1388256	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	56627598	rs1491170	A	G	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	56628031	rs7637449	G	A	6868.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:212,308:0.59:520
chr3	56647799	rs17216685	T	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	56649256	rs61743979	C	T	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:213,118:0.36:331
chr3	56650012	rs4681904	G	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr3	56650054	rs112267342	T	TCTC	888.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr3	56650178	rs9833926	A	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.32;ReadPosRankSum=-0.991;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	56652479	rs79095236	TT	CA	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr3	56653609	rs10534869	CGT	C	2870.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:122,78:0.39:200
chr3	56657257	rs10510787	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr3	56667682	rs9835332	G	C	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:221,113:0.34:334
chr3	56668058	rs76966032	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr3	56672608	rs4681945	G	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.656;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr3	56674190	rs1489949	A	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	56675504	rs17056999	G	C	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:141,108:0.43:249
chr3	56695060	rs7619465	T	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	56716922	rs958755	T	G	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:190,99:0.34:289
chr3	56763316	rs1565376	G	A	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:112,70:0.38:182
chr3	56763328	rs1565377	T	C	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:123,78:0.39:201
chr3	56771251	rs3772219	A	C	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-2.011;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:56,29:0.34:85
chr3	56789146	.	C	T	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-2.665;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:172,41:0.19:213
chr3	56807854	rs374677472	TA	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-0.422;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr3	56808956	rs34038168	A	AC	3126.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.74;QD=37.22;SOR=1.939;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	56993031	rs4626067	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr3	57011234	rs13080107	T	C	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	57069226	rs1844071	C	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.509;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr3	57131529	rs6764188	A	C	9807.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr3	57132200	rs2291462	A	G	5765.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	57137090	rs2247656	A	G	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	57138419	rs6780995	G	A	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr3	57139833	rs1545982	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	57139972	rs1545981	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,114:0.98:116
chr3	57140108	rs2035654	G	A	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr3	57148968	rs11916303	C	A	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	57199350	rs111756850	C	A	1546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=1.094;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:56,74:0.57:130
chr3	57203398	rs4299455	C	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	57232988	.	C	CA	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.062;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr3	57233663	rs200988733	AT	A	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=1.207;QD=6.48;ReadPosRankSum=-1.349;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	57303548	rs146184583	C	CT	995.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,55:0.41:134
chr3	57314594	rs62251997	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.88;ReadPosRankSum=-0.549;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	57335705	rs71921409	TACAC	T,TAC	796.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.607;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.64;ReadPosRankSum=-1.134;SOR=1.447;set=HC	GT:AD:AF:DP	1/2:1,16,9:0.62,0.35:26
chr3	57335769	.	A	G	1350.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,58:0.53:109
chr3	57414097	rs17793014	T	A	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	57414263	rs17793086	T	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr3	57414330	rs11915740	C	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	57419497	rs6773904	C	T	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:134,84:0.39:218
chr3	57422824	rs4234394	A	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr3	57422876	rs78888096	TA	T	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr3	57430988	rs6768943	G	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:113,58:0.34:171
chr3	57431721	rs372891308	AAAATAAAT	A	2033.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,54:0.61:88
chr3	57431740	rs139063171	ATAAATAAATAAT	A	1166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-1.443;QD=10.42;ReadPosRankSum=0.444;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:74,38:0.34:112
chr3	57431985	rs2121743	G	A	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:205,133:0.39:338
chr3	57432064	rs2121742	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr3	57443817	rs6768661	T	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	57456093	rs35152693	C	CA	63.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr3	57456371	rs9871422	T	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	57457123	rs6445886	C	T	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	57469053	rs9826084	A	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	57469097	rs9863860	C	T	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	57469272	rs9864150	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	57475351	rs6806444	T	G	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	57484373	rs73078594	A	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:47,71:0.60:118
chr3	57488279	rs10662782	T	TTTC	2587.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	57494138	rs6445902	A	C	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:17,54:0.76:71
chr3	57509103	rs6768974	T	C	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	57542199	rs61747701	G	T	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:89,69:0.44:158
chr3	57545154	rs3732546	T	C	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr3	57545169	.	G	GC	1995.73	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr3	57563120	rs80155592	GA	G	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.205;QD=4.58;ReadPosRankSum=0.977;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr3	57613814	rs77006676	CTG	C	750.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,23:0.28:82
chr3	57627500	rs9873675	T	C	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	57627580	rs9816093	A	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	57647371	rs11709815	G	A	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-0.658;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr3	57658237	rs143387330	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.89;ReadPosRankSum=-0.023;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr3	57743337	rs13400	C	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	57846577	rs2306056	C	A	265.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr3	57898376	rs35219531	T	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:87,47:0.35:134
chr3	57908594	rs3832206	CT	C	726.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr3	57994719	rs1658338	T	A	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr3	58080505	rs7644723	G	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr3	58081888	rs1522384	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=1.100;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:90,53:0.37:143
chr3	58083446	rs939882	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr3	58089516	rs6445945	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	58089585	rs6445946	T	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr3	58089594	rs3215311	GT	G	612.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	58089851	rs1522385	G	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr3	58089877	rs1522386	A	G	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	58092346	rs2177153	A	G	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr3	58094157	rs2259091	A	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr3	58094852	rs7634236	C	T	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:110,82:0.43:192
chr3	58095466	rs2708318	G	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr3	58095500	rs2686635	G	T	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr3	58109162	rs1131356	G	A	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:192,112:0.37:304
chr3	58110105	rs146851485	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:120,54:0.31:174
chr3	58111285	rs3732633	T	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:151,82:0.35:233
chr3	58112440	rs2362903	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	58112488	rs2362904	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr3	58112556	rs2362905	G	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr3	58116316	rs1573890	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	58116358	rs4475005	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	58116369	rs1882692	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	58118555	rs12632456	G	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:63,44:0.41:107
chr3	58118700	rs12638356	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr3	58121626	rs6445948	T	A	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	58127827	rs34336464	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr3	58131515	rs7355798	C	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr3	58133799	rs190226890	G	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	58133803	rs66977380	AT	A	145.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	58138528	rs9884098	G	A	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:43,77:0.64:120
chr3	58145263	rs12634123	G	A	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	58154327	rs8640	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,47:0.46:103
chr3	58156176	rs4681660	G	A	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	58179318	rs9812109	C	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr3	58186911	rs4234389	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=1.108;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr3	58194051	rs3732631	C	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-2.466;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:133,32:0.19:165
chr3	58196639	rs2292677	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr3	58270963	rs6774235	T	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:48,78:0.62:126
chr3	58296208	rs28502788	A	T	1512.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=3.241;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:64,74:0.54:138
chr3	58296209	.	C	CT	44.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-0.453;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:110,21:0.16:131
chr3	58302404	rs2292674	A	T	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr3	58302586	rs17059171	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:52,83:0.61:135
chr3	58318570	rs78578590	A	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	58318677	rs77825960	A	G	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=1.371;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:24,38:0.61:62
chr3	58319152	rs71311853	C	T	1853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.971;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.26;ReadPosRankSum=1.652;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,46:0.68:68
chr3	58319159	rs71311854	G	A	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=1.318;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:23,50:0.68:73
chr3	58351660	rs111264652	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.738;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr3	58355273	rs9867320	G	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	58368219	rs10662181	C	CT	378.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.632;QD=18.94;ReadPosRankSum=-0.158;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr3	58368449	rs11917591	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.761;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:158,59:0.27:217
chr3	58376992	rs11923253	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:104,49:0.32:153
chr3	58381287	rs13315871	G	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr3	58382846	rs3191903	C	T	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:94,92:0.49:186
chr3	58383048	rs11710058	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr3	58383174	rs55692656	A	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	58383275	rs13317835	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr3	58384995	rs11712213	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:144,69:0.32:213
chr3	58385194	rs4075152	T	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	58389462	rs4339119	A	G	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,39:0.45:87
chr3	58394835	rs9864824	C	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr3	58394850	rs56232415	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr3	58395490	rs140856155	G	GT	1943.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr3	58395501	rs34734687	G	GA	1619.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:5,75:0.94:80
chr3	58395842	rs140203295	A	T	4986.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:113,234:0.67:347
chr3	58395863	rs56384862	A	G	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:210,93:0.31:303
chr3	58398447	rs62258134	C	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=-1.531;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	58398466	rs12635366	C	T	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	58398730	rs13071688	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr3	58398813	rs13071422	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	58409126	rs6767498	C	A	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	58409300	rs35853090	G	GTT	2619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.451;QD=9.89;ReadPosRankSum=0.509;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:179,86:0.32:265
chr3	58409361	rs3196769	A	T	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:36,79:0.69:115
chr3	58410554	rs34579268	C	T	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.337;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:119,63:0.35:182
chr3	58415567	rs4585221	C	T	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:91,111:0.55:202
chr3	58415590	rs2070662	C	A	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	58416535	rs1126551	C	T	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.066;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:111,65:0.37:176
chr3	58416538	rs4264746	T	C	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	58416770	rs138623728	T	TTTA	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.209;QD=14.75;ReadPosRankSum=0.712;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	58417416	rs62259772	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr3	58484521	rs9853873	T	C	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:84,157:0.65:241
chr3	58494546	rs11716125	G	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr3	58516383	rs4387990	G	A	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:200,106:0.35:306
chr3	58520306	rs7611026	G	C	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	58520859	rs4681862	A	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	58553160	rs7637862	T	G	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	58555343	rs7632668	C	T	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	58555386	rs7609991	G	T	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	58572577	rs17059434	C	G	3325.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:117,151:0.56:268
chr3	58572625	rs80312641	G	A	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:86,117:0.58:203
chr3	58575110	rs6445991	A	G	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	58621935	rs6791782	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	58625975	rs3749287	C	G	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr3	58631184	rs111621495	G	GAAATA	1183.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr3	58635197	rs9811989	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr3	58641352	rs57504511	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr3	58720222	rs3762702	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:57,69:0.55:126
chr3	58720366	rs3762703	T	C	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:43,85:0.66:128
chr3	58722820	rs3752818	C	G	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:62,104:0.63:166
chr3	58792086	rs6804653	T	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr3	58834720	rs1554910	T	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	58834824	rs1554909	A	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr3	58834890	rs6797698	C	T	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:89,121:0.58:210
chr3	58855779	.	GTGTC	G	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.130;SOR=0.150;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr3	58899633	rs7653229	A	T	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:68,74:0.52:142
chr3	59996927	rs4679626	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	59996969	rs4679627	C	T	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	59999661	rs80338276	T	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr3	59999690	rs13067835	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr3	60898271	rs6793737	G	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr3	60898434	rs11130795	T	C	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:59,98:0.62:157
chr3	61734539	rs3821880	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	62118490	rs13082242	G	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr3	62189189	rs2292245	G	A	4016.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:147,178:0.55:325
chr3	62229553	rs1352882	C	T	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	62267213	rs10663064	C	CTTTTTTTTTTT	400.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=57.25;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	62355666	rs3215030	G	GT	417.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr3	62431387	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=1.655;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr3	62431415	rs6791296	T	C	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.961;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	62459828	.	A	ATTTTTTTTTTT	528.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.87;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	62477233	rs35911391	A	AACAC	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.339;QD=20.43;ReadPosRankSum=-1.560;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr3	62498378	rs1376917	G	A	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	62501634	rs9863956	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr3	62536388	rs62243510	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr3	62556622	rs833663	A	G	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	62612013	rs2248008	C	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	62612139	rs9854038	A	T	4412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.33;ReadPosRankSum=-0.363;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:111,197:0.64:308
chr3	62612145	rs2248013	C	A	12531.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.63;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr3	62612280	rs2367310	C	T	6334.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	62612294	rs2367311	T	C	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	62612309	rs2367312	G	C	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	62612342	rs2248023	T	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	62612385	rs1349591	G	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	62631553	rs4588354	G	T	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:74,44:0.37:118
chr3	62636826	rs4688302	C	T	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	62647904	rs11712073	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	62647928	rs6770658	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr3	62648142	rs1354781	T	C	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:137,208:0.60:345
chr3	62739092	rs478123	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr3	62860206	rs140896848	A	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr3	63437858	rs6806334	T	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	63437977	rs6793874	C	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	63640534	rs5849568	TA	T	2698.73	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:124,156:0.56:280
chr3	63640601	rs1565983	T	C	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr3	63645231	rs4688176	G	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	63645252	rs4688419	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	63645575	rs34568643	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr3	63649259	rs7612738	G	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	63649492	rs7634688	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr3	63821083	rs62253803	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	63821914	rs2637982	C	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	63849473	.	C	CGCGGCG	864.73	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr3	64133350	rs27673	A	G	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:3,204:0.99:207
chr3	64133384	rs180903875	A	G	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:53,98:0.65:151
chr3	64145759	rs2306380	T	C	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:53,96:0.64:149
chr3	64184676	rs695937	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr3	64431140	rs114898153	C	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	64518994	rs1017537	T	C	10694.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr3	64525014	.	G	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.142;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:105,18:0.15:123
chr3	64525171	rs11130968	G	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	64526943	rs3796382	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:66,42:0.39:108
chr3	64527378	rs1036918	G	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr3	64527465	rs1036917	C	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:61,89:0.59:150
chr3	64532476	rs6787633	G	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr3	64554254	rs7635677	T	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:172,123:0.42:295
chr3	64580169	rs13320542	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,56:0.50:111
chr3	64589851	rs9985304	A	G	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:171,122:0.42:293
chr3	64600829	rs56869336	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr3	64617042	rs6768487	G	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr3	64617070	rs6445420	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	64617699	rs7640062	A	G	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr3	64619048	rs11717158	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr3	64627448	rs9832057	C	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:65,71:0.52:136
chr3	64627752	rs7632802	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr3	64633504	rs12715589	A	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr3	64640206	rs11326156	TA	T	5772.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	64667059	rs73124286	G	T	1782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=0.275;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:67,84:0.56:151
chr3	65350694	rs55638583	A	G	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	65353448	rs7634490	G	A	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	65416648	rs4688566	C	A	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	65425560	rs142043619	T	TCTG	1333.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:125,68:0.35:193
chr3	65439050	rs370264784	GA	G	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.018;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr3	65464522	rs11409972	G	GT	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr3	65464625	rs7636096	G	A	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	65479068	rs7641222	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr3	65583600	.	TGG	T,TGGG	696.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.88;ReadPosRankSum=-0.682;SOR=2.985;set=HC	GT:AD:AF:DP	1/2:1,15,12:0.54,0.43:28
chr3	65595659	.	A	AATAGACCATTCTGAGGTAGAAGGAAAGGAAGGAAAGAGAGAAGGGGAAGGAACTGGGAGAAGAGAAGGGGAGAGGGAGAGAGGAAGGGAAAGAG	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=10.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.64;ReadPosRankSum=-1.490;SOR=4.139;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	65607592	rs112243102	T	TCA	134.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	65607637	rs3749455	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr3	66023592	rs28696109	A	G	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	66271617	rs36196715	G	C	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr3	66287056	rs146159281	G	A	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:53,101:0.66:154
chr3	66293851	rs1678092	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr3	66354911	rs813636	G	C	4021.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:119,175:0.60:294
chr3	66396845	rs332354	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	66406410	rs75462746	A	G	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.85;ReadPosRankSum=1.978;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr3	66406415	rs783129	A	G	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.94;ReadPosRankSum=1.125;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:22,31:0.58:53
chr3	66406605	rs79448160	C	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr3	66413111	rs332387	G	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	66413130	rs332386	T	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	66419956	rs13874	C	T	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:99,114:0.54:213
chr3	66420862	rs59621621	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr3	66428234	rs116677829	C	A	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr3	66430870	rs61754218	G	A	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:105,140:0.57:245
chr3	66432680	rs332371	A	G	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:87,123:0.59:210
chr3	66433312	rs900172	A	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr3	66433676	rs900171	A	G	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:116,136:0.54:252
chr3	66434372	rs4071605	T	TCACACACACACA	812.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr3	66449347	rs201908378	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr3	66460819	rs76247263	C	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-1.714;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr3	66463251	rs4856924	G	A	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	66465259	rs4856928	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	66550756	rs1403625	G	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	66550762	rs1403626	G	C	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.14;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	67048762	rs4856833	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	67053926	rs75804175	T	C	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:74,51:0.41:125
chr3	67276059	rs9868022	G	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	67411103	rs902320	C	T	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.361;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr3	67411166	rs902321	A	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr3	67459492	rs9824745	G	T	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	67548852	rs7630024	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	67660040	rs2290174	G	A	1915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.886;QD=21.53;ReadPosRankSum=0.208;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:38,51:0.57:89
chr3	67660049	rs2290175	A	G	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.897;QD=20.99;ReadPosRankSum=1.073;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:39,51:0.57:90
chr3	67660149	rs11286754	GA	G	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.235;QD=9.40;ReadPosRankSum=0.422;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr3	68606548	rs7616164	G	T	5125.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:132,225:0.63:357
chr3	68782213	rs6549143	A	G	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	68788363	rs1504301	G	T	7308.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr3	68788465	rs1504300	G	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	68801921	rs9835691	T	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr3	68934434	rs4855535	T	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:84,51:0.38:135
chr3	69036524	rs11331317	GA	G	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.255;QD=3.15;ReadPosRankSum=-0.455;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	69036678	rs4855540	G	C	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-1.712;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:111,46:0.29:157
chr3	69036683	rs4855541	G	A	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.021;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:111,40:0.26:151
chr3	69036707	rs4855542	G	A	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:35,105:0.75:140
chr3	69036782	rs4855350	G	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.969;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr3	69037633	rs9310136	G	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr3	69038217	rs4855543	A	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr3	69047141	rs4855544	G	A	1779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-0.388;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:143,94:0.40:237
chr3	69053447	rs9860095	A	T	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr3	69054212	rs11320020	CA	C	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.634;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:8,45:0.85:53
chr3	69054266	rs11417320	A	AT	1709.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,57:0.41:139
chr3	69054341	rs6781612	T	C	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:214,153:0.42:367
chr3	69058783	rs56761230	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr3	69073410	rs3772976	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.700;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr3	69073419	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.523;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	69082657	rs937859	T	C	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.398;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	69082873	rs937858	G	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:83,53:0.39:136
chr3	69084062	rs2055685	G	C	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr3	69084161	rs2271121	C	A	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:168,95:0.36:263
chr3	69088918	rs146136734	T	TC	560.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	69091640	rs9985501	C	T	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	69093598	rs2271118	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	69096614	rs2292199	G	A	8293.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr3	69104695	rs6549179	T	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	69104752	rs6549180	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	69106304	rs59405823	CC	TG	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	69112049	rs2289245	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr3	69112658	.	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=3.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.740;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr3	69171220	rs199769817	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr3	69225588	rs11128118	T	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	69225875	rs9872199	T	A	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr3	69225911	rs9868107	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	69229976	rs12054011	G	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	69230026	rs9818314	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	69230061	rs9831516	G	A	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	69230801	rs9836305	G	A	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	69242770	rs11310698	CA	C	2507.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:12,131:0.92:143
chr3	69244162	rs9853587	G	A	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	69245454	rs9310141	T	C	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	69245949	rs9860235	G	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	69246152	rs13059488	A	G	8498.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr3	69246274	rs13059687	A	G	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	69265291	rs7643175	T	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	69265304	rs77475566	C	CA	1642.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	69265371	rs62254460	G	C	7184.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	69267578	rs4855301	A	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	69271206	rs6549189	T	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	69273656	rs9848940	G	T	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	69336695	rs4855380	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr3	69336740	rs4855381	A	G	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr3	69359730	rs142506790	CACAGAGAGAGAGAG	C	494.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr3	69359734	rs13324422	G	C	253.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=61.61;MQRankSum=-1.949;QD=4.38;ReadPosRankSum=2.411;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr3	69359736	rs62254067	G	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=61.61;MQRankSum=-1.949;QD=5.94;ReadPosRankSum=2.467;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr3	69359738	rs62254068	G	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=61.63;MQRankSum=-1.949;QD=5.94;ReadPosRankSum=2.711;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr3	69359740	rs62254069	G	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=61.66;MQRankSum=-1.949;QD=5.94;ReadPosRankSum=2.907;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr3	69359742	.	G	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=61.66;MQRankSum=-1.949;QD=5.94;ReadPosRankSum=2.938;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr3	69359744	.	G	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=61.70;MQRankSum=-1.949;QD=5.94;ReadPosRankSum=2.907;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr3	69359746	rs76180481	G	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.246;MLEAC=1;MLEAF=0.500;MQ=61.86;MQRankSum=-1.982;QD=2.83;ReadPosRankSum=3.032;SOR=1.947;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr3	69362706	rs1483895	C	T	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:91,98:0.52:189
chr3	69362722	rs2314992	C	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:91,75:0.45:166
chr3	70005712	rs55754687	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr3	70014447	rs9863910	T	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr3	71007347	.	CA	C	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=0.76;ReadPosRankSum=2.099;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:262,71:0.21:333
chr3	71015021	rs7638391	G	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	71025935	rs13068094	C	T	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	71247572	rs56850311	A	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.863;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr3	71247576	rs9855825	A	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.434;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	72495593	rs11460842	T	TA	804.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.031;QD=9.47;ReadPosRankSum=0.517;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:27,58:0.68:85
chr3	72495777	rs13066407	C	G	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	72495945	rs13088771	A	G	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr3	72799703	rs35178407	C	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:89,102:0.53:191
chr3	72873809	rs6786469	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr3	72891736	rs2036446	A	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.10;ReadPosRankSum=0.566;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	72895345	rs1502754	G	T	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.552;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:48,29:0.38:77
chr3	72957734	rs11283456	C	CAGTGTTTA	2236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.390;QD=12.36;ReadPosRankSum=-0.027;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:118,63:0.35:181
chr3	72971341	rs1502755	C	T	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:221,123:0.36:344
chr3	73004157	rs1532190	T	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr3	73004580	rs17742733	T	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr3	73016640	rs3732441	T	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.885;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr3	73016974	rs3821379	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	73024350	rs1052278	C	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:65,90:0.58:155
chr3	73437048	rs199673034	CT	C	1371.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr3	73651383	rs6809923	A	T	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	73651469	rs6797804	C	T	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	73651621	rs11343439	TA	T	1636.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:4,82:0.95:86
chr3	73673578	rs6763344	G	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	74315580	rs615824	C	G	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	74334458	rs141921900	G	A	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:46,80:0.63:126
chr3	74344134	rs1352475	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr3	74413676	rs6549590	T	C	12196.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr3	74474166	rs7619184	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	75386297	rs6769147	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	75386380	rs4677501	T	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	75679937	rs141031386	G	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=45.15;MQRankSum=-0.637;QD=2.97;ReadPosRankSum=-1.171;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:113,18:0.14:131
chr3	75679944	rs201399352	C	T	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=6.028;MLEAC=1;MLEAF=0.500;MQ=46.00;MQRankSum=-2.540;QD=4.00;ReadPosRankSum=1.378;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:102,37:0.27:139
chr3	75679958	rs200114452	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=46.22;MQRankSum=-1.872;QD=1.70;ReadPosRankSum=0.426;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:146,18:0.11:164
chr3	75679973	rs183720508	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.195;MLEAC=1;MLEAF=0.500;MQ=46.35;MQRankSum=-2.435;QD=1.61;ReadPosRankSum=-0.500;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:161,20:0.11:181
chr3	75680088	rs200387791	C	T	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=47.22;MQRankSum=-1.512;QD=13.85;ReadPosRankSum=1.249;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr3	75680109	rs199802601	G	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.62;MQRankSum=-1.944;QD=15.20;ReadPosRankSum=1.693;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	75680122	.	C	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.66;MQRankSum=0.887;QD=5.30;ReadPosRankSum=-0.662;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr3	75680133	rs200731407	G	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.03;MQRankSum=-0.884;QD=17.76;ReadPosRankSum=0.404;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr3	75786440	rs145944373	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.23;QD=26.39;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	75786753	rs3009020	C	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	75786832	rs11122676	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	75790972	rs118003039	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.59;QD=23.90;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	75986663	rs12171318	C	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr3	75986686	rs62269817	A	G	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr3	75986717	rs78834776	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=-3.688;QD=1.01;ReadPosRankSum=-1.220;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:98,20:0.17:118
chr3	75986719	rs62269818	G	C	1992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.257;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=8.381;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-7.534;QD=16.20;ReadPosRankSum=1.301;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:56,67:0.54:123
chr3	75986794	rs80235520	G	A	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:107,66:0.38:173
chr3	75986813	rs77101234	T	A	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:103,44:0.30:147
chr3	75986833	rs73123284	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.807;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=8.558;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-10.846;QD=4.86;ReadPosRankSum=-4.375;SOR=1.692;set=HC	GT:AD:AF:DP	0/1:100,20:0.17:120
chr3	75986874	rs7610755	G	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr3	76484183	rs3849491	T	C	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	77600273	rs3796291	C	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.91;ReadPosRankSum=-1.065;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr3	77607070	rs5850333	A	AC	1186.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:104,48:0.32:152
chr3	77613987	.	TTG	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.735;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr3	77645946	rs35328861	CT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.026;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	77645984	rs775718	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr3	77671721	rs2272163	C	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr3	77681865	rs1451617	T	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	78664011	rs3732661	G	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr3	78676405	rs7625555	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr3	78676467	rs7636043	A	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	78680578	rs6548592	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr3	78700779	rs3925684	C	A	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	78700838	rs58872086	G	A	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr3	78709068	rs76880412	CTTTT	C,CT	924.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.25;SOR=1.528;set=HC	GT:AD:AF:DP	1/2:0,16,11:0.59,0.41:27
chr3	78711394	rs11359455	GA	G	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.61;ReadPosRankSum=-0.674;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	78796078	rs2304503	C	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr3	81548209	rs34988523	T	TAAG	3741.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	81584268	.	CTT	C,CT	1744.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.321;QD=16.94;ReadPosRankSum=0.923;SOR=1.081;set=HC	GT:AD:AF:DP	1/2:7,33,63:0.32,0.61:103
chr3	81630214	rs9870056	G	A	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	81643167	rs2172397	T	C	6362.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	81720221	rs9863136	T	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	81792592	rs3772889	T	C	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	81810516	rs9820490	C	A	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	81810702	rs11391701	A	AG	1518.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	81810770	rs78982329	G	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	85434950	rs3086134	C	CTTT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=8.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.92;ReadPosRankSum=0.114;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	85984830	rs36080783	T	C	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	87100309	rs2575753	T	C	5190.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:159,243:0.60:402
chr3	87100434	rs7619398	G	A	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:53,85:0.62:138
chr3	87100447	rs9831869	G	A	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr3	87100893	rs2256481	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr3	87100951	rs34075162	AG	A	719.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr3	87295049	rs11540913	T	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	88184446	rs186542674	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr3	88188420	rs9813894	G	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.194;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr3	88189341	rs7653652	T	C	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,63:0.48:132
chr3	88190768	rs7432826	C	A	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=1.188;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:104,66:0.39:170
chr3	88190809	rs7432838	C	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:108,66:0.38:174
chr3	88199179	rs6551277	T	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:164,100:0.38:264
chr3	88199185	rs11374933	T	TC	2329.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:164,107:0.39:271
chr3	88199298	rs6551278	T	C	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:204,144:0.41:348
chr3	89390875	rs116667804	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr3	89498619	rs1028011	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	90264768	rs6803112	A	G	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	90276511	rs9815264	G	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	90276661	rs9815542	G	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	93593119	rs6123	T	C	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:87,96:0.52:183
chr3	93646396	rs8178610	C	T	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	94225786	rs1906643	G	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr3	97194422	rs7624823	T	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	97278324	rs72930184	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr3	97311729	rs4857277	T	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	97331269	rs72932221	A	C	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-1.145;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr3	97331389	rs9841964	T	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr3	97365038	rs301948	G	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	97365074	rs301949	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	97367230	rs3214668	C	CA	3942.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	97467361	.	ATC	A	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=7.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.465;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:116,18:0.13:134
chr3	97499654	rs10935082	T	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.60;ReadPosRankSum=0.319;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	97541018	rs974572	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr3	97593380	rs2279898	G	A	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:106,157:0.60:263
chr3	97605677	rs831902	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr3	97611916	rs1506441	A	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr3	97619250	rs5851085	C	CAACTA	821.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr3	97651884	rs4857298	A	C	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr3	97660106	rs4857302	A	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr3	97660198	rs832089	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	97664725	rs2172257	C	T	4353.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:119,192:0.62:311
chr3	97666183	rs2307808	TCTC	T	2197.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,59:0.44:135
chr3	97673268	rs832079	A	C	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	97686575	rs699304	T	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr3	97726747	rs832032	T	A	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	97727727	rs832030	G	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	97727753	rs832029	G	A	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	97731434	rs11426005	C	CA	1065.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr3	97753931	rs832070	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	97805954	rs13082722	T	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	97806616	rs4518168	G	A	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	97806999	rs6439602	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	97851998	rs9845327	A	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	97852083	rs9826076	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	97868419	rs4241468	G	A	7716.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	97868795	rs4857076	A	G	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	97868970	rs12639519	T	A	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	97887865	rs4133320	G	A	11130.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.50;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr3	97887985	rs4133321	T	A	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	97888042	rs4133322	A	T	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	97888197	rs7623031	C	T	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	97983257	rs2132894	C	G	10028.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr3	97983391	rs2173236	C	T	9810.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	97983452	.	ATC	A	2973	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=1;MGOF=67;MMLQ=28;MQ=59.27;NF=81;NR=145;PP=2973;QD=20;SC=GTAAGATGATATCTCTCTCTG;SbPval=0.33;Source=Platypus;TC=293;TCF=96;TCR=197;TR=226;WE=97983461;WS=97983442;set=Platypus	GT:AD:AF:DP	0/1:67,226:0.77:293
chr3	97983487	rs74203917	TTGTAACCAC	T	10824.73	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:3,391:0.99:394
chr3	97983561	rs9289564	G	C	11871.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;MQ=59.88;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr3	97983711	rs9853887	T	C	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	97983942	rs9853906	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	97983981	rs9871143	G	A	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	98073591	rs11288615	TA	T	1878.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr3	98109615	.	C	T	1859.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:99,86:0.46:185
chr3	98110406	rs144759043	G	GA	628.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.74;QD=23.29;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	98217178	rs55639376	T	A	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:26,63:0.71:89
chr3	98220243	rs73140298	C	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr3	98220492	rs143567740	AAG	A	77.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	98225441	rs1132750	A	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	98241847	rs6807441	G	C	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=5.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=0.581;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:158,106:0.40:264
chr3	98252027	rs1529047	G	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	98281349	rs9850648	G	T	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr3	98304467	rs1729995	T	C	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	98310085	rs35909472	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr3	98487206	rs3213958	A	G	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	98489686	rs1440153	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:60,90:0.60:150
chr3	98490141	rs844160	A	T	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	98501080	rs3772100	C	T	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	98503683	rs704585	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	98507134	rs73136057	C	A	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	98518160	rs62821060	T	TAA	3017.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	98518530	rs111245657	T	C	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:87,109:0.56:196
chr3	98519481	rs1822017	G	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	98541012	rs866873	G	A	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	98542194	rs6440159	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	98542485	rs142035943	G	GAAGAA	1401.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	98544304	rs73138004	T	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	98544353	rs828622	G	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	98619997	rs17852693	G	C	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	99536937	rs1718240	C	T	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	99649036	.	A	G	294.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr3	99904783	rs12629505	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	100053684	rs3830303	C	CG	225.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	100067468	rs277649	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr3	100086861	rs277640	T	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr3	100092229	rs62274148	G	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	100092526	rs11384494	A	AG	1244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-1.178;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:76,36:0.32:112
chr3	100092527	.	G	GGTGC	1336	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=2;NR=16;PP=1336;QD=76.6111111111;SC=AATTCAACTAGTCCAGTTAAG;SbPval=0.66;Source=Platypus;TC=72;TCF=9;TCR=63;TR=18;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/0:54,18:0.25:72
chr3	100092528	rs3832198	T	TGCA	1287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=-1.097;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:76,36:0.32:112
chr3	100170553	rs7641299	G	A	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr3	100238231	rs67473840	ATG	A	941.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr3	100277476	rs7645690	G	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr3	100277514	rs7645700	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	100295733	rs7427360	A	G	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:80,130:0.62:210
chr3	100352043	rs610854	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	100354524	rs1144122	A	G	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:63,88:0.58:151
chr3	100354683	rs1520652	G	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr3	100354698	rs1718281	T	A	1059.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.27;ReadPosRankSum=-0.781;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:3,52:0.95:55
chr3	100368425	rs7622958	A	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	100368692	rs1144118	A	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	100374740	rs9866111	T	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr3	100432752	rs9824942	A	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.647;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	100467018	rs11353	T	C	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:122,80:0.40:202
chr3	100473505	rs10936352	C	T	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:117,87:0.43:204
chr3	100493607	rs3736534	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	100511379	rs989794	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.742;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	100511428	rs989793	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	100511446	rs989795	T	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr3	100514848	rs73152412	C	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr3	100515197	rs201011497	AT	A	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=2.189;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr3	100523771	rs10511184	A	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr3	100527237	rs73152453	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.466;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr3	100529408	rs144286330	AT	A	218.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr3	100530228	rs764252	C	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	100530791	rs12152417	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	100532510	rs73135513	T	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr3	100534566	rs17337991	A	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.883;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	100534705	rs73135528	G	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-0.866;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr3	100534714	rs73135529	T	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=-0.828;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr3	100534863	rs73135530	A	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	100536252	rs73135535	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr3	100539299	rs144488788	A	ATTATAATAGTATGTCTCCTT	350.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	100539865	rs73135545	G	A	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.048;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:153,94:0.38:247
chr3	100543585	rs73135561	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	100543871	rs73135562	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr3	100544422	rs56105262	C	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr3	100544756	rs56387789	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr3	100547378	rs73135573	G	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr3	100548484	rs36077176	T	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:111,88:0.44:199
chr3	100551061	rs73135584	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,39:0.40:97
chr3	100581261	.	A	AT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.386;QD=2.67;ReadPosRankSum=-0.789;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr3	100583651	rs10711419	GA	G	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.937;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr3	100594326	rs3839090	CGGCATA	C	7504.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	100605206	rs1987384	A	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	100617532	rs41273553	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr3	100617668	rs34999788	G	T	1678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=1.491;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:39,76:0.66:115
chr3	100617680	rs2245370	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:82,45:0.35:127
chr3	100621426	rs2576365	C	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:92,34:0.27:126
chr3	100621683	rs41273557	TC	AA	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;JOINED;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr3	100945069	rs146849728	TTATATATATATATATATATATATATATATATATATATA	T	201.76	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	100945983	rs486352	A	T	328.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	100946742	rs521661	T	G	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	100949842	rs348867	G	A	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	100963154	rs571391	G	A	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	100976755	rs7613046	G	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	100992385	rs348866	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr3	100994497	rs533852	C	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr3	101038339	rs546090	G	A	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	101039107	rs573908	A	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	101046671	rs9849770	C	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.274;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:75,34:0.31:109
chr3	101051794	rs2068494	C	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	101060716	rs6441598	T	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	101066717	rs2433031	T	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr3	101066964	rs7636229	T	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr3	101066992	rs2553421	A	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	101080694	rs7616677	T	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=-0.917;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr3	101085413	rs939443	G	A	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:179,109:0.38:288
chr3	101085683	rs58636547	TAAAAA	T	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	101136385	rs4482646	C	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,23:0.37:63
chr3	101136402	rs9859077	G	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr3	101177644	rs12496159	A	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr3	101212596	rs9876655	T	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	101212889	rs3846088	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.664;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr3	101219889	rs7621830	G	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr3	101231871	rs9681493	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.128;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr3	101231894	rs9682312	TA	GT	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.978;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.517;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:49,23:0.32:72
chr3	101231921	rs9682313	T	C	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.572;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:60,31:0.34:91
chr3	101299031	rs144008875	CAAT	C	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	101304414	rs3804776	G	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	101308846	rs6441614	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	101370529	rs56200814	TA	T	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.387;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:17,50:0.75:67
chr3	101371899	rs2303474	G	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr3	101383321	rs13081846	T	C	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr3	101383562	rs11712748	G	A	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:125,120:0.49:245
chr3	101383800	rs11720934	C	T	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:167,224:0.57:391
chr3	101389864	rs9837549	T	C	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	101400167	rs3094296	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:57,72:0.56:129
chr3	101404813	rs2303473	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr3	101443461	rs994573	T	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	101446207	rs3070526	AAT	A	2339.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr3	101484335	rs2625282	G	A	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	101504624	rs2625289	A	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	101571550	rs587555	A	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	101572822	rs2925334	C	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	101573345	rs11309019	AT	A	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.753;QD=1.37;ReadPosRankSum=0.135;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:98,33:0.25:131
chr3	101574503	rs677011	G	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	101575882	rs595788	T	C	1255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-1.461;QD=10.64;ReadPosRankSum=-0.319;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:37,81:0.69:118
chr3	101576029	rs3217713	T	TACTTTTAGAAAGCTTTAATAACC	12806.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	101576175	rs14134	T	C	8013.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr3	102157283	rs11340850	GT	G	1559.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,51:0.50:101
chr3	102157365	rs6784362	A	T	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:107,135:0.56:242
chr3	102157417	rs6784389	A	G	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=1.347;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:105,142:0.57:247
chr3	102174936	rs62272486	G	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr3	102181131	rs12054046	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr3	105238890	rs11291806	CT	C	2604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=2.939;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.030;QD=7.36;ReadPosRankSum=-0.366;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:183,171:0.48:354
chr3	105238901	rs2291376	T	C	3276.73	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:234,169:0.42:403
chr3	105252377	rs2171146	G	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	105253475	rs6437601	A	C	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:44,90:0.67:134
chr3	105258861	rs1044240	A	G	3010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-2.143;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:138,150:0.52:288
chr3	105260596	rs599278	T	C	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	105404031	rs16851440	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	105412286	rs10635036	C	CTT	1192.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	105422844	rs2305037	C	T	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	105438806	rs7624400	G	A	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-1.344;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:31,51:0.62:82
chr3	105452751	rs1992520	C	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	105453034	rs6768096	A	G	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	105455955	rs2289746	T	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr3	105468330	rs1443098	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	105495175	rs3836269	CT	C	815.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr3	105495432	rs9809911	G	T	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	105586538	rs2221379	G	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	105588069	rs11711088	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	107096547	rs709564	G	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:173,86:0.33:259
chr3	107435471	rs150018279	C	T	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:54,87:0.62:141
chr3	107451771	rs62262030	A	G	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr3	107451907	rs4855764	C	T	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr3	107510197	rs150873331	A	ATAAG	3020.73	.	AC=1;AF=0.500;AN=2;DB;DP=205;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:103,82:0.44:185
chr3	107519843	rs1532325	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	107524097	rs9842741	A	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr3	107769230	rs696364	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr3	107776511	rs709436	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	107777051	rs3762679	C	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr3	107809798	rs445541	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	107882643	rs327168	G	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	107884211	rs327167	T	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	107937231	rs1289761	T	C	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	107937286	rs1289760	A	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	107937544	rs2305447	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	107937571	rs1289759	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	107937602	rs1289758	C	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	107938240	rs1289754	G	C	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	108070556	rs9846218	T	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	108072243	rs6766283	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	108072298	rs6779254	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	108072704	rs6779650	T	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	108073903	rs17182659	C	T	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:61,83:0.58:144
chr3	108096098	rs1463426	C	G	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	108096227	rs1463425	G	C	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	108102586	rs34041576	T	TA	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-0.834;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr3	108107704	rs1463431	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	108107925	rs7616341	C	A	6978.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	108117694	rs13087507	G	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	108129348	rs1078455	T	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	108135606	rs56933265	TAA	T	3602.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	108135609	rs116262927	A	T	3611.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=43.52;SOR=2.219;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	108135680	rs9873504	C	T	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:92,134:0.59:226
chr3	108135799	rs11927603	C	G	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	108140148	rs4593038	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	108147295	rs1350235	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	108147728	rs3900940	T	C	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:59,36:0.38:95
chr3	108156633	rs113832514	A	AAAAG	2496.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	108158574	rs3996040	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:81,47:0.37:128
chr3	108158837	rs12629032	T	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr3	108159977	rs12638212	G	A	6348.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:170,283:0.62:453
chr3	108172817	rs6437783	C	T	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:91,58:0.39:149
chr3	108179219	rs11303627	CA	C	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=0.961;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:43,62:0.59:105
chr3	108183433	rs12488437	A	G	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:34,73:0.68:107
chr3	108188755	rs11917965	A	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr3	108188993	rs9868484	G	A	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:108,66:0.38:174
chr3	108189750	rs12495639	C	T	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	108195406	rs3996003	C	T	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:128,66:0.34:194
chr3	108211869	rs140450152	A	AAAGG,AAAGGAAGG	1754.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=39.88;ReadPosRankSum=-1.379;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:1,25,18:0.57,0.41:44
chr3	108214537	rs2603140	T	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	108224685	rs55971936	C	CAA	1580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-0.540;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:82,93:0.53:175
chr3	108229122	rs3843872	C	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.88;ReadPosRankSum=-2.823;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	108229171	rs2249886	T	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	108229437	rs150536264	G	GA	1290.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.369;QD=18.18;ReadPosRankSum=1.068;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:5,66:0.93:71
chr3	108271012	rs2305514	T	C	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	108273441	rs2045095	T	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	108286947	rs11386134	G	GA	1126.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	108298260	rs2278911	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr3	108355423	rs10711079	AT	A	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	108355575	rs10711080	CT	C	1125.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:20,70:0.78:90
chr3	108356501	rs143129590	T	TTTAAGGTAGTA	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	108367086	rs56153625	G	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	108367099	rs75702132	C	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	108393164	rs41267027	G	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr3	108403086	rs9856097	T	C	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	108403198	rs12635729	T	C	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:73,113:0.61:186
chr3	108475808	rs1107337	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr3	108475974	rs11708527	G	A	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.356;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:27,29:0.52:56
chr3	108557820	rs7651205	T	C	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:49,73:0.60:122
chr3	108565815	rs2593831	T	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	108567923	rs2715716	G	A	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	108639119	rs2715688	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr3	108639270	rs6791441	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr3	108639384	rs6804162	T	C	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-0.552;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr3	108639423	rs2715687	C	T	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	108677821	rs2197737	C	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	108678002	rs2197738	G	A	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.07;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	108682218	rs2715755	A	G	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	108690221	rs2593943	G	A	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	108698627	rs2953338	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	108703422	rs1868195	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	108703518	rs2593958	G	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	108703548	rs2593959	C	T	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	108703702	rs2593960	A	T	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	108705715	rs11433147	A	AT	605.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr3	108719470	rs3762698	C	G	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	108724279	rs2290058	T	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	108725694	rs2044586	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	108725759	rs2044587	C	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	108725848	rs5851630	ATTGC	A	6422.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	108725862	rs2044589	T	C	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	108725984	rs2044590	G	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	108746836	rs17665933	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	108754146	rs9821261	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	108754238	rs4855576	A	T	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=26.12;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	108754260	rs3762696	A	G	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	108754320	rs11438791	T	TAA	664.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=28.90;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	108773772	rs7653625	A	G	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	108776343	rs1031252	C	T	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	108780831	rs7653651	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	108812154	rs9821382	A	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	108829765	rs6437822	C	T	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	108855774	rs1356071	A	G	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	108855801	rs1356072	T	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	109019435	rs9865540	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	109027157	rs7611135	C	T	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	109027820	rs7611871	G	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	109049147	rs376934388	CAAAAAAAAAAAAAAAAAA	C	494.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	109049180	rs5851663	GA	G	557.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.35;ReadPosRankSum=1.863;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr3	109049720	rs112463757	C	CTAAGGGT	743.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	109050980	rs1163438	T	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	109052732	rs3762648	T	C	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	109052934	rs7642495	G	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	109056183	rs9836011	A	T	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.528;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.704;QD=6.22;ReadPosRankSum=-0.266;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:99,51:0.34:150
chr3	109178707	rs769534	C	G	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-0.537;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:56,33:0.37:89
chr3	109178758	rs769533	C	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	109213091	rs9877608	T	C	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-1.010;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:100,63:0.39:163
chr3	110611137	rs1381838	G	A	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	110791113	rs4682228	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	110792906	rs2399372	G	A	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	110793050	rs2399373	G	A	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	110830746	rs10575342	ATGTGTG	A	760.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	110866195	.	CT	C	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=3.263;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:170,56:0.25:226
chr3	110866437	rs62273799	G	A	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	111260975	rs2276873	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:73,23:0.24:96
chr3	111261242	rs3832264	G	GCTGCTGAAATTGATCACCA	844.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=-1.012;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr3	111298145	rs9831496	A	G	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:56,82:0.59:138
chr3	111356083	rs1533270	G	C	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	111451603	rs3821919	G	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	111604541	rs1283007	G	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr3	111637816	rs16858868	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr3	111637904	rs2399399	G	A	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	111638132	rs951660	A	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr3	111638952	rs6779756	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	111639353	rs937551	G	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	111658290	rs712509	T	G	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr3	111658486	rs712510	T	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	111659377	rs698358	T	C	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	111677505	rs62277620	T	C	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:102,77:0.43:179
chr3	111677526	rs11713044	G	A	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.64;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	111685328	rs774859	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	111685348	rs774858	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr3	111685374	.	GGT	G	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.016;QD=18.05;ReadPosRankSum=-0.711;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	111686738	rs799570	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	111692693	rs2895388	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr3	111692829	rs774852	C	T	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	111697867	rs2289598	T	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=-1.771;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr3	111705275	rs150902974	G	GTTTGTTTTGT	873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.081;QD=17.47;ReadPosRankSum=0.847;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr3	111705992	rs3804765	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr3	111709664	rs7637202	T	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr3	111710206	rs6795538	T	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=1.623;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:58,35:0.38:93
chr3	111710398	rs17429033	A	G	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:304,179:0.37:483
chr3	111710682	rs3749308	A	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr3	111719493	rs774764	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	111730546	rs3749310	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	111730591	rs3749311	G	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr3	111730766	rs3828394	G	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr3	111732608	rs8070	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr3	111757212	rs7625876	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	111760771	rs774774	A	G	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	111763085	rs4682350	C	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	111763278	rs7650559	G	T	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	111765834	rs1561911	G	A	12422.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr3	111766215	rs1318554	A	G	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr3	111766559	rs1688304	T	G	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	111766919	.	T	C	218.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	111769417	rs7625159	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr3	111776135	rs55971748	T	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	111785208	rs11715561	G	A	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,68:0.54:125
chr3	111793316	rs191454	G	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr3	111794365	rs1907639	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr3	111799845	rs340151	A	T	7205.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr3	111805438	rs3833596	G	GT	3227.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	111828423	rs340167	G	A	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	111838203	rs35833422	CAA	C	1026.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr3	111843883	rs923745	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	111851817	rs950528	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr3	111851890	rs879652	A	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:82,86:0.51:168
chr3	111860222	rs1492480	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr3	111870228	rs6781137	C	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:177,100:0.36:277
chr3	111873902	rs11369523	T	TA	767.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.441;QD=14.49;ReadPosRankSum=-1.420;SOR=0.513;set=HC	GT:AD:AF:DP	1/1:7,46:0.87:53
chr3	111873996	rs7622733	C	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr3	111885896	rs4682084	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	111887792	rs76007436	C	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr3	111904539	rs2399407	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	111918215	rs28516377	C	T	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.513;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:43,38:0.47:81
chr3	111918215	.	CA	TG	326	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=25;MQ=60.0;NF=17;NR=14;PP=326;QD=12.2408991891;SC=CCTTTTAAGCCAAAAGCCTTA;SbPval=0.43;Source=Platypus;TC=68;TCF=40;TCR=28;TR=31;WE=111918224;WS=111918205;set=Platypus	GT:AD:AF:DP	0/1:37,31:0.46:68
chr3	111918216	rs13098660	A	G	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.76;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	111921010	rs9821935	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr3	111921116	rs9288938	C	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr3	111921225	rs6781844	G	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	111923047	rs4422273	G	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	111923123	rs4434123	G	A	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	111936118	rs11921877	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	111936200	rs1388857	C	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	111958679	rs13065023	T	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr3	111958862	rs13089635	C	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr3	111962774	rs13089316	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr3	111962851	rs6768523	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr3	111981696	rs5851826	CA	C	1108.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	111981704	rs5003791	C	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	111981849	rs9860819	C	T	8925.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	111981878	rs9809384	T	C	10219.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr3	111981924	rs9809404	T	C	8906.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr3	111983197	rs6788397	C	T	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	111984970	rs4682098	T	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	111985048	rs4682099	G	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	111985107	rs9872691	T	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-1.114;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr3	111988992	rs13069541	T	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr3	111993915	rs4682100	A	G	63.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	111996554	rs9828502	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr3	111996730	rs9809174	G	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr3	111997510	rs12632408	T	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=0.309;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	111997791	rs13314977	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	111999736	rs147052896	A	ACTTGTTTTCT	849.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	112005423	rs7621431	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	112052103	rs2276772	G	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr3	112052173	rs9883527	T	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	112059768	rs1131199	C	G	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:27,63:0.70:90
chr3	112063850	rs2272022	C	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr3	112066360	rs7612748	C	T	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:79,116:0.59:195
chr3	112184927	rs2171513	A	G	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	112185025	rs9288952	G	A	8785.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr3	112188476	.	A	AGTACATAGAATATG	345.74	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=69.15;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	112188480	.	A	ATAC	257.76	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=36.82;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	112190137	rs2931761	G	T	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	112253058	rs35560667	C	CA	2943.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:16,145:0.90:161
chr3	112253193	rs11381118	C	CA	1746.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.778;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=11.57;ReadPosRankSum=0.864;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:35,116:0.77:151
chr3	112267523	rs9809247	G	A	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	112280218	rs2279532	G	A	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	112289320	rs9869455	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	112289372	rs9869579	G	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	112301458	rs5851844	C	CCTTAGTAAT	3065.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	112324453	.	A	C	1322.77	.	AC=1;AF=0.500;AN=2;DP=205;set=Intersection	GT:AD:AF:DP	0/1:135,70:0.34:205
chr3	112338027	rs13084615	T	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	112415652	rs10934180	G	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	112537671	rs147786691	TG	T	1244.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr3	112538571	rs35585943	CT	C	979.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr3	112546473	rs1997281	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:157,80:0.34:237
chr3	112556904	rs6795521	C	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	112556946	rs6770923	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.86;ReadPosRankSum=1.732;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	112642568	rs9865242	C	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:39,60:0.61:99
chr3	112647613	rs1466872	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr3	112647832	rs9826308	A	C	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,53:0.63:84
chr3	112647988	rs9868053	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr3	112648125	rs6438117	G	T	5325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.934;QD=19.87;ReadPosRankSum=-1.757;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:129,139:0.52:268
chr3	112648125	.	GGT	TGG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=21;MQ=59.71;NF=63;NR=50;PP=2944;QD=20;SC=TGATGGCCACGGTACGAATCT;SbPval=0.48;Source=Platypus;TC=238;TCF=136;TCR=102;TR=113;WE=112648135;WS=112648115;set=Platypus	GT:AD:AF:DP	0/1:125,113:0.47:238
chr3	112648127	rs4596117	T	G	5325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.941;QD=19.80;ReadPosRankSum=-2.507;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:130,139:0.52:269
chr3	112648222	rs2171509	T	C	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr3	112709828	rs2272393	C	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=1.017;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr3	112714150	rs146384448	A	AC	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr3	112718352	rs1054263	G	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr3	112724619	rs7628368	A	G	4051.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:81,178:0.69:259
chr3	112727184	rs2306857	A	T	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:156,113:0.42:269
chr3	112732299	rs199986564	T	G	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.339;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:34,48:0.59:82
chr3	112732309	rs5851869	GT	G	1433.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.67;ReadPosRankSum=-0.800;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,48:0.96:50
chr3	112738318	rs2293560	C	T	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	112738625	rs7633507	C	T	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	112935138	rs4682130	C	G	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:110,139:0.56:249
chr3	112991842	rs11717833	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	112991959	rs11710894	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:74,35:0.32:109
chr3	112993223	rs147556461	C	T	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:268,137:0.34:405
chr3	112993367	rs13094203	G	A	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:95,161:0.63:256
chr3	112997554	rs775228	A	G	9041.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr3	112998090	rs3856720	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chr3	112998265	rs2649878	A	G	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-0.232;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:120,65:0.35:185
chr3	112998268	rs2650100	G	A	2568.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:60,118:0.66:178
chr3	112999611	rs775229	A	G	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	113003595	rs775222	G	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:100,57:0.36:157
chr3	113004155	rs41271355	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	113005743	rs146459508	G	GT	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=1.265;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr3	113005754	rs5022662	A	T	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.46;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	113010466	rs2291905	T	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-1.023;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:34,33:0.49:67
chr3	113012797	rs810209	G	A	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:95,38:0.29:133
chr3	113012974	rs775217	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:52,16:0.24:68
chr3	113013848	rs11398178	A	AT	351.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;MQ=60.37;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr3	113015436	rs808949	G	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr3	113015464	rs3829889	G	A	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:70,109:0.61:179
chr3	113015553	rs808950	A	C	4190.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:301,219:0.42:520
chr3	113015660	rs2270781	G	A	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:196,120:0.38:316
chr3	113022870	rs4682484	T	C	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	113022996	rs2270782	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr3	113024018	rs2270785	T	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:83,99:0.54:182
chr3	113027214	rs775231	A	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	113045561	rs3732809	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr3	113046640	rs13064411	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr3	113092197	rs1463640	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr3	113115543	rs77501585	C	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr3	113119301	rs7647220	C	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	113125966	rs73237123	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:56,23:0.29:79
chr3	113135345	rs12635786	A	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:49,27:0.36:76
chr3	113135543	rs12630518	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	113138763	rs2129434	T	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr3	113145006	rs73239107	C	T	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.592;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:88,38:0.30:126
chr3	113146130	rs59722850	T	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.893;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:72,42:0.37:114
chr3	113152596	rs2291413	T	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr3	113164109	rs2054823	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	113169372	.	G	GA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=9.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.683;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:65,21:0.24:86
chr3	113175944	rs5851894	TA	T	762.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr3	113176122	rs7637618	G	A	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:90,163:0.64:253
chr3	113207758	rs7625841	G	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	113211953	rs3732804	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr3	113211957	rs3732803	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr3	113212041	rs1471884	G	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr3	113218206	rs6798938	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.352;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.32;ReadPosRankSum=0.536;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	113222036	rs11537650	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr3	113222099	.	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.14;ReadPosRankSum=-0.155;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	113225530	.	G	GA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.380;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr3	113233563	rs2306069	C	T	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=1.288;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:86,46:0.35:132
chr3	113285185	rs71633326	TTG	T	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.499;QD=11.34;ReadPosRankSum=-1.841;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr3	113285423	rs2271495	T	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:81,51:0.39:132
chr3	113286405	rs2292511	C	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:126,52:0.29:178
chr3	113300183	rs2271494	A	T	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	113300351	rs9863703	T	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr3	113300390	rs62265520	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr3	113302118	rs62265521	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	113302425	rs2271493	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-0.063;SOR=1.954;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr3	113304171	rs41271363	G	A	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:99,54:0.35:153
chr3	113313947	rs2614193	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	113322006	rs17325765	T	G	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:111,133:0.55:244
chr3	113331289	rs9842516	T	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr3	113373930	rs930818	A	G	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr3	113376110	rs10606566	TTGC	T	8143.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr3	113377481	.	G	GT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.314;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:119,27:0.18:146
chr3	113377505	rs16861271	T	G	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:110,85:0.44:195
chr3	113499458	rs1430944	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	113557787	rs66781755	AGCC	A	11616.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	113595156	rs2712350	C	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	113619872	rs2632244	C	T	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	113655207	rs3765114	C	T	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=5.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.527;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:144,70:0.33:214
chr3	113656833	rs1963015	C	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=0.000;QD=8.47;ReadPosRankSum=1.553;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr3	113656852	rs5851908	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.565;QD=2.14;ReadPosRankSum=-0.165;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr3	113659203	rs7630027	C	T	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:106,177:0.63:283
chr3	113659308	rs2029228	G	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr3	113664183	rs68028538	CAG	C	525.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	113673125	rs11921691	A	G	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	113679589	rs12629415	C	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:69,82:0.54:151
chr3	113679725	rs3732785	C	T	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	113720624	rs6438178	C	T	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	113775149	.	G	A	848.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr3	113784007	rs34428541	A	AT	749.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.970;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.66;ReadPosRankSum=0.181;SOR=0.297;set=HC	GT:AD:AF:DP	1/1:5,40:0.89:45
chr3	113795834	rs7631864	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	113798720	rs201522052	C	T	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,70:0.54:129
chr3	113801826	rs13086657	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr3	113801965	rs13071100	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	113858350	rs2251177	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	113890815	rs6280	C	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-2.172;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr3	113955055	rs11316836	GA	G	1497.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.572;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.554;QD=15.93;ReadPosRankSum=-1.935;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:7,87:0.93:94
chr3	113955164	rs3732782	T	G	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=36.25;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	113955187	rs3732781	A	C	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:68,91:0.57:159
chr3	113955265	rs6438190	G	A	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	113955320	rs6438191	C	T	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	114018441	rs73238032	T	C	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:97,119:0.55:216
chr3	114026673	rs11714612	A	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	114027065	rs35641088	C	CGTGT	1007.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr3	115529092	.	G	GTCTC	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=2.187;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr3	115529360	rs2289269	A	G	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.70;ReadPosRankSum=-1.152;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:23,48:0.68:71
chr3	115529370	rs2289268	A	G	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.92;ReadPosRankSum=-0.623;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:22,41:0.65:63
chr3	116163634	rs138580275	GAC	G	1033.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=0.696;QD=24.61;ReadPosRankSum=2.041;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:5,37:0.88:42
chr3	116728295	rs11381408	G	GA	440.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	118269774	rs9816586	A	G	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	118269825	rs57227846	GT	G	1086.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=0.188;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,63:0.84:75
chr3	118621500	rs34908332	C	T	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.305;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=1.049;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:139,90:0.39:229
chr3	118624369	rs62275716	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr3	118649060	rs2903250	G	T	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:45,111:0.71:156
chr3	118753542	rs73185835	G	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=10.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.504;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr3	118865970	rs4077930	G	A	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:143,183:0.56:326
chr3	118866376	rs56317615	C	T	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:217,141:0.39:358
chr3	118866515	rs9864127	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	118878789	rs13077000	C	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-0.096;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr3	118909159	rs9840317	A	G	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:43,63:0.59:106
chr3	118909962	rs3796356	T	C	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr3	118909987	rs3796357	C	T	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr3	118931389	rs6784208	C	T	8867.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr3	118935278	rs34867718	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.46;MQRankSum=0.172;QD=23.26;ReadPosRankSum=0.350;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	118935280	rs72331299	CACACACGCACAT	C	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.239;QD=23.94;ReadPosRankSum=0.522;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr3	118945578	rs3752377	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr3	118945614	rs3752376	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr3	118945796	rs3764779	G	C	2872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.212;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:70,126:0.64:196
chr3	119013928	rs3732412	A	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr3	119118104	rs4688001	A	G	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	119128628	rs1463139	A	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=0.967;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	119128634	rs1463138	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=0.967;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	119133183	rs3732413	G	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:132,68:0.34:200
chr3	119133554	rs61740281	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:206,96:0.32:302
chr3	119171280	rs1919586	C	G	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:132,100:0.43:232
chr3	119188895	rs6438531	C	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr3	119196334	rs3732419	G	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr3	119197285	rs4688005	A	G	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:145,103:0.42:248
chr3	119198873	rs4688007	G	A	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:229,133:0.37:362
chr3	119199099	rs199681244	C	CT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-1.620;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	119205545	rs187516992	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:92,36:0.28:128
chr3	119211384	rs11556604	T	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr3	119276377	rs66604554	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr3	119301139	rs20568	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=0.867;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:97,72:0.43:169
chr3	119305379	rs25676	T	A	7209.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	119334986	rs2247660	G	A	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	119336728	rs4688020	C	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	119338956	rs2280669	A	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	119339010	rs1877595	G	A	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	119339054	rs1877594	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	119339063	rs144464347	TCC	T	1071.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr3	119348130	rs17281751	G	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr3	119348345	rs3054091	A	ATT,ATTT	3580.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.052;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=-0.352;SOR=0.284;set=HC	GT:AD:AF:DP	1/2:7,55,75:0.40,0.55:137
chr3	119361250	rs8007	A	G	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	119362318	rs67683909	A	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=1.942;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr3	119362369	rs6783324	G	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.368;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-1.141;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	119367390	rs2688643	T	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	119373301	rs2688630	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	119373315	rs2688629	T	C	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	119378872	rs1880040	G	A	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr3	119378977	rs2873788	G	A	4492.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:100,188:0.65:288
chr3	119379186	rs4688023	C	T	6347.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	119379352	rs4688024	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	119394168	rs2293235	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr3	119395799	rs2280578	A	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-1.761;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr3	119395870	.	CGG	C	203.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	119422204	rs7624672	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	119426307	rs9848716	T	C	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	119434527	rs6438544	G	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	119456239	.	T	G	3090.77	.	AC=1;AF=0.500;AN=2;DP=419;set=Intersection	GT:AD:AF:DP	0/1:256,161:0.39:417
chr3	119469961	rs188385994	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr3	119501580	rs3841391	G	GC	838.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr3	119501780	rs2472668	G	A	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	119501798	rs2461831	T	A	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	119521776	rs115649056	G	T	2330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-1.357;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:72,107:0.60:179
chr3	119529113	rs3732356	G	T	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	119533733	rs6785049	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr3	119533773	rs6797879	T	C	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	119533910	rs4058490	T	C	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	119534153	rs2276707	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr3	119595503	rs1719895	A	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	119721171	rs12108149	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr3	119886548	rs9858566	G	C	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	119886776	rs902790	T	A	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	119900212	rs1488765	G	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	119900260	rs1488764	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	119904125	rs902791	A	G	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr3	119904315	rs902792	G	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	119905641	rs2319542	G	A	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	119911667	rs2319543	G	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	119912297	rs902793	C	A	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:3,164:0.98:167
chr3	119962322	rs1492272	G	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	120067797	rs4676696	G	A	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	120123953	rs1147701	T	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	120130883	rs67083358	GACACACACACACACATACATGC	G	2268.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	120134720	rs3215378	A	AG	1651.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	120134883	rs2272515	T	C	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	120169641	rs1147708	T	C	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	120369575	rs3817627	T	G	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr3	120371414	rs2551607	G	A	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	120389243	rs1800722	T	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr3	120389316	rs2255543	T	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:101,59:0.37:160
chr3	120413158	rs7612975	G	A	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	120428621	rs11720353	T	C	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,74:0.59:126
chr3	120461576	rs7647895	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	120500446	rs2229308	T	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	120673673	rs142292885	CT	C	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=8.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.281;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr3	120673740	.	AT	A	3142.73	.	AC=1;AF=0.500;AN=2;DP=206;set=Intersection	GT:AD:AF:DP	0/1:65,138:0.68:203
chr3	120673980	rs73185491	T	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr3	120833993	rs16832111	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=2.374;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr3	120924764	rs74730846	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	120976051	rs17249244	C	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr3	121043357	rs76958336	C	A	1714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.345;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:255,104:0.29:359
chr3	121100116	rs35624942	GT	G	1344.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	121100414	rs17740072	A	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:34,79:0.70:113
chr3	121137976	rs6782025	C	T	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	121138015	rs6782033	C	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	121154974	rs1381057	T	C	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	121155198	rs2030531	C	T	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	121186543	rs1381058	A	G	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	121195302	rs10591564	TACAC	T,TAC	2873.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;QD=35.05;SOR=1.739;set=HC	GT:AD:AF:DP	1/2:0,67,15:0.82,0.18:82
chr3	121207637	rs3218642	G	T	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:213,110:0.34:323
chr3	121208833	rs3218649	G	C	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	121212277	rs11351457	AT	A	2273.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:3,108:0.97:111
chr3	121228833	rs3732406	A	C	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	121238749	rs702018	G	A	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	121241058	rs13059229	C	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	121263720	rs702017	C	A	8429.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr3	121265176	rs3806614	G	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	121265522	rs11714774	A	C	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	121339354	rs7640859	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	121339520	rs35295338	A	C	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=1.266;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:71,78:0.52:149
chr3	121340536	rs4676684	T	C	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:108,198:0.65:306
chr3	121350583	rs1128159	C	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.12;ReadPosRankSum=0.860;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	121350966	rs9869984	C	G	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	121351315	rs150627065	G	GGGCTCAGGCTCA	5076.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.89;MQRankSum=7.178;QD=12.54;ReadPosRankSum=2.371;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:255,150:0.37:405
chr3	121351480	rs9815500	T	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr3	121353254	rs2070179	T	C	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:126,60:0.32:186
chr3	121354381	rs7620842	A	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	121354583	rs3772126	G	A	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-0.715;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:84,58:0.41:142
chr3	121383297	rs7153	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.396;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr3	121388362	rs11363204	AT	A	142.75	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	121400725	rs1463736	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr3	121414061	rs1127412	C	T	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:102,65:0.39:167
chr3	121415720	rs3732410	T	C	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:248,132:0.35:380
chr3	121416623	rs3732407	G	C	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:174,123:0.41:297
chr3	121433926	rs9854052	T	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	121435621	rs9832267	T	C	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-0.129;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:143,65:0.31:208
chr3	121435624	rs9812411	C	T	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-0.612;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:139,65:0.32:204
chr3	121438451	rs370784404	TA	T	2158.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:106,74:0.41:180
chr3	121489439	rs148949254	TA	T	3312.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:73,113:0.61:186
chr3	121500479	rs149985093	TACACACACACACAC	T,TACACACACACACACACACAC	1007.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	1/2:0.59,0.38:29
chr3	121500699	rs17849995	C	T	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=0.398;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:52,72:0.58:124
chr3	121507415	rs4073474	C	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr3	121508830	rs6802815	A	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr3	121514458	rs141330650	TA	T	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.059;QD=5.02;ReadPosRankSum=-0.086;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	121515940	.	A	AT	282.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr3	121526099	rs4582090	A	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr3	121526204	rs4543051	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.491;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr3	121527903	rs35072741	C	CT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.679;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	121554147	rs113829843	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr3	121613205	rs4603998	G	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	121616191	.	A	G	378.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr3	121631841	rs1523519	G	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:100,52:0.34:152
chr3	121643163	rs2293611	G	C	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr3	121659197	rs3817599	G	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr3	121712051	rs2877561	A	C	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:70,149:0.68:219
chr3	121712805	rs3915061	G	C	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr3	121712980	rs3915060	C	T	4014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-1.211;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:144,187:0.56:331
chr3	121720494	rs62269207	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=0.579;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	121720514	.	G	GT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.968;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr3	121724038	rs3942629	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr3	121810427	rs57304749	CT	C	5358.73	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:3,239:0.99:242
chr3	121825197	rs2681417	G	A	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	121836966	rs10580127	TGA	T	5151.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	121838319	rs1129055	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr3	121976253	rs9869985	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr3	122001099	rs2270916	T	C	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,54:0.54:100
chr3	122003045	rs2036400	G	C	14988.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr3	122003832	rs1801726	G	C	5199.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:169,221:0.57:390
chr3	122004098	rs4677948	A	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	122060274	rs6762112	A	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr3	122081659	rs9857709	AA	GC	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	122081881	.	G	GA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=6.395;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.223;QD=0.97;ReadPosRankSum=0.202;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:86,21:0.20:107
chr3	122103120	rs115407410	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr3	122128466	rs4306808	G	C	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	122128757	rs16833120	T	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr3	122133321	rs6777596	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr3	122134275	.	T	G	1668.77	.	AC=1;AF=0.500;AN=2;DP=248;set=Intersection	GT:AD:AF:DP	0/1:159,87:0.35:246
chr3	122145810	rs4677950	T	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	122161101	rs9842736	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr3	122168341	rs3749209	C	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr3	122180011	rs56074178	C	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr3	122186188	rs4678193	C	T	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	122215166	rs9289194	A	AACACACACAC	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr3	122259606	rs9851180	T	C	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:110,147:0.57:257
chr3	122259738	rs145948621	G	GTT	1062.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=2.839;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:50,44:0.47:94
chr3	122259745	rs9831600	G	T	1445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=-2.744;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:48,46:0.49:94
chr3	122259782	rs9868934	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	122269380	rs1979853	A	G	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	122271204	rs3216715	T	TA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.962;QD=7.89;ReadPosRankSum=0.356;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	122277160	rs9289198	G	T	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:14,51:0.78:65
chr3	122277172	rs9289199	G	A	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:17,54:0.76:71
chr3	122283309	.	C	T	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-1.898;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr3	122285005	rs12485294	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr3	122287289	rs9839782	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	122288210	rs2332285	G	A	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:90,140:0.61:230
chr3	122290579	rs2036342	C	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:86,45:0.34:131
chr3	122354037	rs1106346	A	G	3490.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:70,156:0.69:226
chr3	122354052	rs1106345	A	G	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:58,136:0.70:194
chr3	122354792	rs12489170	G	A	5766.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:197,250:0.56:447
chr3	122406077	rs790131	G	A	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr3	122437321	rs7645033	T	C	10040.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	122437834	rs3821688	A	G	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:188,102:0.35:290
chr3	122471407	rs72280610	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.462;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:74,24:0.24:98
chr3	122471423	.	A	AC	1586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=2.083;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:40,82:0.67:122
chr3	122474305	rs6794019	C	A	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=1.106;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	122477795	rs2137210	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr3	122478032	rs10657578	C	CCACA	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=10.26;ReadPosRankSum=1.317;SOR=0.112;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr3	122512542	rs76805079	G	C	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=1.757;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:60,40:0.40:100
chr3	122512631	rs3806643	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr3	122513964	rs891406	A	C	130.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	122598291	rs2288677	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr3	122605544	rs9864868	G	A	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:94,63:0.40:157
chr3	122605701	rs6438769	T	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr3	122630323	rs2303982	T	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr3	122630346	rs2303983	T	C	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr3	122631896	rs2276782	A	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr3	122634720	rs147395298	C	T	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:41,84:0.67:125
chr3	122645606	rs79543585	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr3	122646591	rs73856750	C	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr3	122646734	rs2276775	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:77,54:0.41:131
chr3	122646828	rs2276774	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr3	122647610	rs76653630	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr3	122658417	rs3732827	G	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr3	122680171	rs4677985	A	G	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	122694820	rs895076	A	T	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.246;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:193,80:0.29:273
chr3	122694930	rs9968193	C	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:170,86:0.34:256
chr3	122811042	rs836863	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	122821108	rs2717233	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	122821385	rs2241961	T	C	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr3	122821478	rs2241962	T	A	1359.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=-1.486;SOR=0.304;set=HC	GT:AD:AF:DP	1/1:1,57:0.98:58
chr3	122821671	rs2241963	AT	GA	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	122834887	rs836839	A	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr3	122835210	rs836840	A	G	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	122835232	rs2278668	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	122843110	rs861375	G	T	10488.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr3	122843212	rs2305051	C	T	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:4,188:0.98:192
chr3	122873923	rs2717225	G	C	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:57,80:0.58:137
chr3	122880191	rs8935	T	C	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=0.216;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:59,43:0.42:102
chr3	123008519	rs4677881	T	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	123010276	rs9809236	G	A	5162.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:90,214:0.70:304
chr3	123014877	rs9881951	C	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	123015094	rs9882534	G	C	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	123018963	rs4482616	A	G	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	123021838	rs9877581	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	123021870	rs9844212	G	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr3	123022740	.	G	GAAGAA	654.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=5.686;MLEAC=1;MLEAF=0.500;MQ=66.78;MQRankSum=4.886;QD=19.26;ReadPosRankSum=-2.113;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr3	123022763	rs4437082	C	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr3	123037047	rs4327330	A	C	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	123039808	rs112520557	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	123047666	rs9855969	A	G	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	123049678	rs4678009	C	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	123049938	rs6806529	A	C	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	123066555	rs112525497	A	AAAGG	9535.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	123086698	.	G	GA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.177;QD=0.24;ReadPosRankSum=1.202;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:212,40:0.16:252
chr3	123167249	rs4678027	G	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	123218425	rs141259622	T	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:181,86:0.32:267
chr3	123378534	rs39639	C	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	123411589	rs40305	G	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-2.636;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:86,43:0.33:129
chr3	123418913	rs865358	G	A	14816.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr3	123440967	rs820355	G	A	8054.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr3	123451773	rs9833275	G	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	123452838	rs4678047	G	A	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	123456432	rs2168439	C	T	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	123457711	rs2198766	C	A	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	123457893	rs9840993	G	A	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr3	123458693	rs55956729	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:57,20:0.26:77
chr3	123633612	rs11551801	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	123634046	rs2700373	G	A	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	123650432	rs2271969	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.63;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	123650447	rs35352118	TA	T	115.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.65;ReadPosRankSum=-0.000;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr3	123652476	rs6784695	G	A	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	123665902	rs17310144	T	G	8112.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr3	123666192	rs17375977	C	T	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	123688760	rs34337446	C	G	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	123694595	rs138944419	C	G	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=22.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	123851972	rs7627646	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	124044949	rs2289778	C	T	9147.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr3	124113929	rs482285	A	T	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	124128938	rs647010	A	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	124132263	rs2289846	A	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr3	124165217	rs624450	G	A	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	124181261	rs535121	C	T	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:100,127:0.56:227
chr3	124181454	rs2289839	C	T	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:54,55:0.50:109
chr3	124195987	rs572145	T	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	124281980	rs2256831	T	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	124303786	rs2250757	G	C	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	124351316	rs1708303	G	A	8717.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr3	124351424	rs1660038	T	C	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	124352573	rs652046	A	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	124369640	rs11372663	T	TA	6023.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	124369650	rs2291988	T	C	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	124374259	rs4677938	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	124374405	rs4677939	A	C	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	124376653	rs106520	G	A	7578.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	124377196	rs10804562	G	A	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	124378386	rs333297	C	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	124378412	rs10755078	A	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	124379641	rs333291	C	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	124379748	rs333290	G	C	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	124379817	rs333289	T	C	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	124393595	rs333355	A	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	124393610	rs333354	A	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	124396338	rs333349	T	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	124397249	rs35286809	AT	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr3	124397321	rs3830412	AT	A	344.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	124398571	rs821365	A	T	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	124398589	rs821364	A	C	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	124412524	rs2289428	T	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	124412634	rs333283	G	T	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	124416698	rs333277	A	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	124449252	rs2279199	T	C	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	124449291	rs1139538	A	G	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	124450258	rs4678146	T	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	124450321	rs10934681	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	124451284	rs16835925	T	C	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	124454174	rs3772804	A	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	124458816	rs694897	C	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	124462710	rs3772807	G	C	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	124483089	rs2291079	C	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr3	124605736	rs6438861	T	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	124629222	rs34208404	TA	T	1563.70	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:18,105:0.85:123
chr3	124646515	rs145010235	T	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:124,59:0.32:183
chr3	124646705	rs10630030	A	AAAG	7080.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	124653710	rs10934701	A	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	124728472	rs6438868	C	G	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	124728626	rs6438869	A	G	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	124729193	rs6784454	T	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	124731485	rs10804567	C	G	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	124732618	rs6790837	A	G	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	124732842	rs6438871	C	A	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	124733649	rs6438873	T	G	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	124738107	rs59232004	C	T	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	124739892	rs6438874	G	A	6745.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr3	124746049	rs2981546	A	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	124746182	rs2333041	C	A	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr3	124746347	rs4404487	T	C	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	124748226	rs2860440	G	A	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	124774432	rs62265663	T	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=1.420;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	124774643	rs186106404	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-1.323;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	124802677	rs1574340	A	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr3	124802881	rs2981483	A	G	3498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=1.771;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:127,95:0.43:222
chr3	124802888	rs2981482	C	T	1801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=1.193;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:126,94:0.43:220
chr3	124803043	rs2981481	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.139;QD=2.29;ReadPosRankSum=0.364;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr3	124837684	rs621383	T	C	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	124839470	rs863642	G	A	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr3	124854425	rs702048	T	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	124854636	rs2981503	A	T	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	124870443	rs73191256	C	T	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	124896861	rs545103	C	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	124911555	rs73193442	C	T	1383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.114;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.570;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:147,80:0.35:227
chr3	124930044	rs673881	A	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	124930408	rs686088	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	124951171	rs35950048	CT	C	1221.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.519;QD=11.86;ReadPosRankSum=-0.531;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:16,87:0.84:103
chr3	124951821	rs1053738	C	T	8822.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr3	124998098	rs10665336	C	CAAA	1256.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.22;ReadPosRankSum=-1.343;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr3	125238781	.	T	TGGCCC	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.566;QD=10.25;ReadPosRankSum=-1.049;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr3	125250610	rs62270201	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr3	125257209	rs6771891	T	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr3	125270985	rs10541213	GTATA	G	964.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr3	125297715	rs2922184	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	125301711	rs2979382	C	G	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-1.511;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:110,57:0.34:167
chr3	125701099	rs2270986	T	C	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,59:0.58:102
chr3	125725268	rs111477552	TAACA	T	3602.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:85,95:0.53:180
chr3	125725559	rs1044215	C	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	125726048	rs2279819	G	C	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,47:0.62:76
chr3	125734308	rs2279821	G	A	1852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=3.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=2.227;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:83,85:0.51:168
chr3	125769757	rs4077563	C	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:94,59:0.39:153
chr3	125775228	rs7613944	T	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	125775266	rs140883435	C	T	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr3	125775428	rs6438964	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	125786695	rs4308225	G	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	125786760	rs4308226	G	A	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	125786879	rs4234270	T	C	3610.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	125826059	rs1127717	T	C	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:76,145:0.66:221
chr3	125831572	rs4646744	GGC	G	2873.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	125843400	rs3217578	A	AG	1274.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	125844718	rs2278756	G	A	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	125848911	rs1868125	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	125848945	rs2365002	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	125849031	rs873696	C	T	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	125849238	rs2002287	G	A	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	125850101	rs4646733	CA	TG	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	125850169	rs3821451	T	C	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	125850193	rs3816366	A	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	125850381	rs2305228	A	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	125850434	rs2305227	C	T	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	125854311	rs3216713	TC	T	7855.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	125856916	rs6799991	A	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	125874388	rs2276731	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr3	126133239	rs6775131	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr3	126138778	rs2271630	T	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	126142433	rs140223152	CGGA	C	5502.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:99,142:0.59:241
chr3	126142496	rs13064828	T	C	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:92,58:0.39:150
chr3	126151797	rs35133442	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	126157464	rs11444454	T	TG	647.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr3	126158622	rs1799404	A	C	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.655;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:88,42:0.32:130
chr3	126160884	rs63288960	CATTA	C	993.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr3	126169091	rs777493	T	C	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	126169230	rs777494	C	T	8576.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr3	126169472	rs777495	T	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	126181071	rs6775965	A	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr3	126184941	rs1799389	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr3	126185238	rs1687463	C	T	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:40,84:0.68:124
chr3	126185265	rs3830336	A	AT	1125.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr3	126189919	rs777499	A	G	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr3	126194076	rs812367	T	C	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:114,174:0.60:288
chr3	126194357	rs7624748	G	C	2382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.019;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.48;ReadPosRankSum=-0.777;SOR=0.629;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr3	126202147	rs79648980	G	A	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:117,76:0.39:193
chr3	126202257	rs1687477	G	A	5343.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:182,244:0.57:426
chr3	126207222	rs777483	A	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	126208249	rs777479	A	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,68:0.67:102
chr3	126211479	rs2307882	C	CCTCT	2738.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	126215130	rs6797423	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr3	126216829	rs13098666	T	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr3	126218159	rs6771670	T	A	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:35,84:0.71:119
chr3	126218769	rs35907154	T	C	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	126218788	rs6774768	T	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	126219030	rs13072404	T	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	126219086	rs13092625	A	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	126219117	rs13092793	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr3	126219627	rs34025926	G	A	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:106,170:0.62:276
chr3	126219733	rs79706014	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr3	126219750	rs201018413	A	C	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr3	126219752	rs139417364	ACACAGCCTGGGC	A	1056.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr3	126219973	rs1177565	T	C	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	126220078	rs34663426	G	A	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:259,154:0.37:413
chr3	126220539	rs9844797	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	126220845	rs7643584	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	126226518	rs9784244	C	T	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	126227185	rs16837531	G	A	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:42,69:0.62:111
chr3	126228410	rs729456	G	A	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=5.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-0.336;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:53,70:0.57:123
chr3	126236316	rs139504701	G	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr3	126236348	rs1687480	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	126243419	rs7613347	A	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr3	126247973	rs147129828	ACCCTGCACAGGGCGCGAG	A	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.033;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr3	126268953	rs869464	T	G	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	126270757	rs13071443	G	T	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	126328101	rs9856833	A	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:87,58:0.40:145
chr3	126329910	rs777241	A	G	6670.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	126340553	rs3732534	G	A	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr3	126350531	rs777226	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr3	126365127	rs11453652	C	CT	4735.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	126373994	rs3108755	A	G	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	126633419	rs2303994	C	G	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	126644974	rs732462	G	C	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	126724881	rs12489348	G	C	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	126737268	rs4679323	C	A	6007.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	126739012	rs891762	G	T	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	126739291	rs6439030	T	C	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	126751689	rs6439031	G	A	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	126880488	rs7625800	T	C	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	127105975	rs35530528	TA	T	1606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.164;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:33,129:0.80:162
chr3	127106144	rs9856643	C	A	11720.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:4,477:0.99:481
chr3	127106259	rs9856935	C	T	32648.77	.	AC=2;AF=1.00;AN=2;DB;DP=1268;set=Intersection	GT:AD:AF:DP	1/1:10,1235:0.99:1245
chr3	127323830	rs893293	C	T	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	127327309	rs3087450	G	A	4544.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:117,208:0.64:325
chr3	127336934	rs782427	A	G	10012.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	127388150	rs2304551	A	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr3	127391018	rs813633	A	G	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	127396220	rs1658037	T	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	127410957	rs377758577	TTG	T	79.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.86;ReadPosRankSum=0.700;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	127410959	rs814130	G	T	42.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=-0.819;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr3	127434580	rs627498	G	A	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	127434856	rs477554	C	T	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	127441239	rs2291372	T	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr3	127540635	rs11538698	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr3	127641968	rs4141499	C	A	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	127703085	rs13100951	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr3	127775788	rs9847934	T	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	127983495	rs2811544	T	C	5115.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr3	128181537	rs2953129	C	T	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:255,149:0.37:404
chr3	128181777	rs2659690	A	G	5097.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:91,226:0.71:317
chr3	128182074	rs2981026	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:103,60:0.37:163
chr3	128200806	rs11708606	G	A	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:63,107:0.63:170
chr3	128205860	rs1573858	G	C	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr3	128292060	rs2734045	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:36,66:0.65:102
chr3	128292062	rs200346912	CT	C	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.606;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:70,30:0.30:100
chr3	128292213	rs2734046	A	G	5806.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	128344786	rs1126828	G	A	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	128348735	rs11453536	G	GA	1156.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	128356852	rs1697	C	T	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	128363332	rs2811497	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	128580574	rs789248	T	C	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:69,43:0.38:112
chr3	128580585	rs789247	C	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:77,46:0.37:123
chr3	128612659	rs1680780	G	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr3	128614075	rs11379527	G	GA	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.292;QD=4.70;ReadPosRankSum=-0.781;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:33,21:0.39:54
chr3	128614133	rs1683791	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:77,46:0.37:123
chr3	128614185	rs1680778	A	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:132,78:0.37:210
chr3	128616325	rs1683804	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:83,46:0.36:129
chr3	128616359	rs789213	C	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:143,78:0.35:221
chr3	128618366	.	G	GGTGT	226.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.34;ReadPosRankSum=1.704;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr3	128622760	rs1683776	G	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr3	128624880	rs1683777	T	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr3	128626952	rs1683786	T	C	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:79,56:0.41:135
chr3	128627021	rs1683787	A	G	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:201,125:0.38:326
chr3	128627753	rs876754	T	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr3	128627933	rs876755	C	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:184,113:0.38:297
chr3	128629505	rs3830293	C	CTGAT	2182.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:90,57:0.39:147
chr3	128653952	rs883602	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr3	128663955	rs7619327	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:63,44:0.41:107
chr3	128664654	rs9289336	G	T	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:103,72:0.41:175
chr3	128720487	rs1871951	A	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr3	128755814	rs3732429	T	C	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:104,81:0.44:185
chr3	128755953	rs3732430	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr3	128755971	rs3732431	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr3	128757560	rs2306529	C	G	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr3	128840323	.	GC	G	1091.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DP=872;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.130;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:778,83:0.10:861
chr3	128840325	.	C	G	1099.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DP=857;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.29;ReadPosRankSum=1.114;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:771,83:0.10:854
chr3	128853622	rs7646403	C	G	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	128859202	rs10664499	C	CTTAG	9797.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	128864520	rs9842978	C	G	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	128864540	rs9880527	A	G	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	128877521	rs4452346	C	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	128890350	rs4303883	G	A	8675.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr3	128993029	.	G	GA	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=2.965;QD=2.34;ReadPosRankSum=0.394;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr3	129020778	rs6765930	A	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:67,31:0.32:98
chr3	129100288	rs62266952	A	G	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	129123051	rs114955151	G	A	2405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.264;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=9.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=-0.335;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:44,113:0.72:157
chr3	129123327	.	GT	G	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.162;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	129147418	rs3796391	G	A	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr3	129152144	rs140695	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	129185661	rs6805886	C	A	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	129225418	rs71333619	G	T	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-0.329;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:70,49:0.41:119
chr3	129279597	rs2713627	C	T	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	129281980	rs2713625	C	T	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	129293183	rs2625962	T	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	129303197	rs2811463	T	C	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	129308096	rs13079843	G	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	129324193	rs7619850	A	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	129546729	rs784689	T	C	7645.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	129694934	rs784705	C	A	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	129695538	rs784704	C	T	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	129695954	rs5662	T	C	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	129696041	rs5663	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	129811073	rs13066399	T	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr3	130114408	rs5852594	AC	A	2857.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	130116696	rs12488457	A	C	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	130120457	rs79091684	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr3	130122409	rs5852595	TG	T	4256.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	130124270	rs1497313	A	G	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.919;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	130124491	rs10934940	G	A	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	130124989	rs4688761	C	T	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	130125116	rs1497312	G	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	130132302	rs11717623	T	A	6483.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	130132302	.	TAG	AAT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=74;NR=54;PP=2947;QD=20;SC=TACTTATGTCTAGCAGAGAAT;SbPval=0.49;Source=Platypus;TC=130;TCF=76;TCR=54;TR=128;WE=130132312;WS=130132292;set=Platypus	GT:AD:AF:DP	1/1:2,128:0.98:130
chr3	130132304	rs11713542	G	T	6483.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	130132509	rs2219026	A	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	130132851	rs10512767	A	G	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	130134492	rs16827497	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	130134563	rs7628563	G	A	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	130135456	rs6439233	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	130135575	rs4688798	A	T	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	130137866	rs13062453	G	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	130142587	rs35980322	AT	A	474.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	130144984	rs1874599	G	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	130158343	rs2403340	C	T	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	130162395	rs9883988	A	G	4672.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	130174334	rs819085	G	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	130187817	rs322113	T	C	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	130189918	rs10668406	T	TTG	436.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.24;ReadPosRankSum=0.773;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr3	130190630	rs322117	G	A	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=26.09;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	130190720	rs11355796	AT	A	4752.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	130190777	rs322118	G	A	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	130284284	rs9830253	G	A	10381.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	130286886	rs9836961	T	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	130289617	rs10934949	T	C	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	130300650	rs6439249	T	C	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	130308702	rs4515022	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	130313017	rs1467015	T	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	130317341	rs4336088	G	A	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	130360600	.	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=11.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=2.248;SOR=2.121;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr3	130368069	rs7614116	A	G	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:125,81:0.39:206
chr3	130383973	rs59386806	G	A	4714.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:470,259:0.36:729
chr3	130398468	rs12495186	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	130424390	rs75791598	C	A	2801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.211;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:145,77:0.35:222
chr3	130424393	rs7652761	C	T	2850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.148;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:145,81:0.36:226
chr3	130425653	rs2306688	C	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	130449222	rs2170990	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr3	130454884	rs111464199	T	TA	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	130569557	rs1316658	T	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:56,20:0.26:76
chr3	130613634	rs112703671	C	G	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr3	130651096	rs2685178	T	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	130674022	rs218494	A	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	130678263	rs2760271	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr3	130719948	rs11403338	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.502;QD=3.83;ReadPosRankSum=0.638;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	130748733	rs9864242	A	G	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	130828790	rs9850655	G	A	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	130851101	rs4974466	A	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	130852185	rs2674613	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	130873723	rs1400013	T	G	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	130881409	rs1913898	T	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	130947435	rs3738000	A	T	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-1.185;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:35,53:0.60:88
chr3	131186893	rs56928817	CA	C	421.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=0.839;QD=13.61;ReadPosRankSum=0.834;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr3	131188377	.	TACAC	T,TAC	1325.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.46;ReadPosRankSum=-0.221;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:2,9,34:0.20,0.76:45
chr3	131261662	rs10716194	TG	T	5921.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	131404572	rs6439314	A	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	131404625	rs113276957	A	AAC	1505.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:107,57:0.35:164
chr3	131624097	rs3749262	G	A	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	131756241	rs2141570	T	C	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	131756348	rs9859988	C	T	11780.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:2,447:1.00:449
chr3	131756375	rs1569281	A	G	10904.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr3	132063914	rs972774	A	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:109,70:0.39:179
chr3	132068831	rs2228402	C	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr3	132068876	rs2290542	G	A	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=0.091;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:69,42:0.38:111
chr3	132068925	rs2290541	A	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr3	132069028	rs3217658	CAAG	C	409.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	132071452	rs17242113	G	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr3	132075554	rs3181784	T	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr3	132075707	rs2071505	A	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:123,66:0.35:189
chr3	132075746	rs1042330	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr3	132153333	rs10662251	T	TAG	2884.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:45,72:0.62:117
chr3	132172395	rs7613098	C	T	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=0.128;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:22,47:0.68:69
chr3	132182443	rs11328911	TG	T	2003.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:27,63:0.70:90
chr3	132196761	rs2369797	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr3	132196816	rs2369796	A	T	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-2.410;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:46,64:0.58:110
chr3	132218196	rs2088712	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr3	132218441	rs3834794	A	AT	404.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	132218623	rs3762672	G	T	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:101,151:0.60:252
chr3	132221076	rs200192843	CTT	C,CT	1244.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=11.958;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.316;QD=16.17;ReadPosRankSum=1.200;SOR=1.272;set=HC	GT:AD:AF:DP	1/2:5,28,44:0.36,0.57:77
chr3	132235344	rs80120242	A	T	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:151,88:0.37:239
chr3	132244313	rs9843883	C	T	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	132244406	rs754993	G	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr3	132345489	rs113322334	T	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr3	132360883	rs821572	C	T	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	132403418	rs34391943	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:30,83:0.73:113
chr3	132441046	rs145643112	C	T	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:46,76:0.62:122
chr3	133098806	rs34111099	C	T	13437.77	.	AC=1;AF=0.500;AN=2;DB;DP=1083;set=Intersection	GT:AD:AF:DP	0/1:462,614:0.57:1076
chr3	133099245	rs1197314	G	A	6702.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:241,301:0.56:542
chr3	133114893	rs1197300	C	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	133166403	rs7644197	A	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	133167363	rs2276737	G	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	133329943	rs1444601	G	A	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:107,130:0.55:237
chr3	133335787	rs3732574	C	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	133341988	rs10935070	T	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr3	133342218	rs4854738	C	T	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.602;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=0.350;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:161,102:0.39:263
chr3	133368362	rs3192149	T	G	4447.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:131,200:0.60:331
chr3	133374030	rs7639941	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	133375785	rs2718801	G	A	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	133380130	rs2718805	T	C	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	133467517	rs8177189	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr3	133474147	rs8177225	T	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:7,46:0.87:53
chr3	133483696	rs1880669	T	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:78,44:0.36:122
chr3	133485133	rs2692696	A	G	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	133485366	rs8177279	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	133485371	rs1525891	G	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	133486958	rs8649	G	C	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-2.231;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:54,50:0.48:104
chr3	133489583	rs1525890	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr3	133493705	rs35736766	GT	G	1409.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-0.409;SOR=0.584;set=HC	GT:AD:AF:DP	1/1:14,87:0.86:101
chr3	133493827	rs2715626	T	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr3	133553527	rs2280672	C	T	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	133556964	rs139009223	ACCGTGCCGGGCC	A	5037.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	133583647	rs3811645	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr3	133692497	rs4634113	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	133692743	rs4241362	C	T	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	133698280	rs4640563	C	G	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	133877113	rs56088702	A	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:114,62:0.35:176
chr3	133901733	rs9829505	A	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr3	133910998	rs76803140	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr3	133941504	rs9865808	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=0.674;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr3	133969437	.	A	AG	893.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	133969487	.	G	GC	666.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.75;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	134077470	rs1353776	C	G	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chr3	134080661	rs1077718	A	G	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	134085070	rs67655717	GAAGT	G	3937.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:55,99:0.64:154
chr3	134197429	rs61748112	G	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:83,58:0.41:141
chr3	134214042	rs62269547	T	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	134225969	rs9827878	T	C	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chr3	134226159	rs6766818	C	T	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	134256159	rs12634127	A	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	134264859	rs1357762	A	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	134266148	rs12632372	G	C	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	134270582	rs143913453	TATATATATATATATAC	T	341.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.64;QD=37.97;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	134270886	rs9821505	A	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	134280395	rs6777283	T	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	134293619	rs4586863	A	G	267.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	134322742	rs2293293	A	G	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	134323156	rs4955535	A	G	5512.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	134331874	rs7626611	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	134331980	rs9838119	C	T	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	134369716	rs13060869	C	A	5939.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=7.814;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.64;ReadPosRankSum=2.457;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:2,221:0.99:223
chr3	134514579	rs9852662	T	C	13856.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr3	134697009	rs373709784	A	AC	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	134898742	rs1042787	C	T	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:68,81:0.54:149
chr3	134898960	rs10512945	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.504;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr3	134968465	rs4243397	T	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	135720540	rs9814557	A	G	6487.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	135720673	rs9872542	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	135721781	rs34901937	C	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr3	135722264	rs17197552	A	G	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	135768232	rs67039922	T	A	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	135789212	rs75125767	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr3	135913665	rs1992952	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	135980673	rs2290131	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr3	136002809	rs3821445	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr3	136059537	rs503973	G	C	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:28,73:0.72:101
chr3	136196071	rs1394092	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr3	136218930	rs900048	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	136310398	.	G	GAA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=2.623;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr3	136573289	rs9865545	G	A	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	136573440	rs9827648	A	G	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	136574501	rs1052618	A	G	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	136574578	rs3076229	T	TTAA	801.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	136649463	rs7648817	C	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	136699133	rs5852860	CT	C	227.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-1.442;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr3	136701295	rs361239	G	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	136728886	rs361235	G	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	136739387	rs63332362	CT	C	3630.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	136739406	rs1385306	C	G	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=26.87;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	137717991	rs6764398	G	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:47,16:0.25:63
chr3	137743508	rs17204075	A	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:98,64:0.40:162
chr3	137748521	rs41265449	T	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr3	137748586	rs41265451	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr3	137748822	rs58607601	C	CA	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	137749839	rs16847742	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:75,34:0.31:109
chr3	137750056	rs55923693	T	C	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	137781923	rs329388	A	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	137783700	rs179282	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	137786442	rs442800	T	C	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	137787047	rs374045	C	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	137787192	rs446644	T	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	137787282	rs419075	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	137787355	rs446847	T	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	137787935	rs382629	G	A	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	137787963	rs445025	T	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	137788123	rs425938	T	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	137788141	rs407009	T	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	137799291	rs384828	A	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	137799498	rs405602	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	137800656	rs2622711	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	137807259	rs2724693	G	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	137816817	rs7629243	A	C	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	137843018	rs1564496	G	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	137843106	rs2170309	T	C	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	137843476	rs2246945	G	T	5231.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	137850003	rs2724691	A	G	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	137880695	rs9851548	A	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	137880743	rs2622736	G	A	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:15,251:0.94:266
chr3	137881265	rs3732839	T	A	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	137882377	rs2622734	G	T	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	137882752	rs2622733	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	137907234	rs185868026	T	A	755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.289;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:34,49:0.59:83
chr3	137958438	rs6778511	C	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr3	137981439	.	TA	T	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.683;QD=0.83;ReadPosRankSum=-1.443;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:122,36:0.23:158
chr3	137982718	rs939453	T	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr3	138020275	rs7637162	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	138020677	rs6801411	C	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	138025136	rs3856636	T	G	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	138025396	rs9846480	A	G	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	138033181	rs9289556	C	T	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	138043535	rs71940335	TACACACACAC	T,TAC	791.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.53;QD=37.70;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:0,7,14:0.33,0.67:21
chr3	138091701	rs1199333	G	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	138170788	rs13095961	T	G	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:65,100:0.61:165
chr3	138171042	rs4678418	C	T	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	138173905	rs56236670	G	A	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	138176533	rs66644444	A	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	138179308	rs67037472	G	A	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	138179328	rs6763380	C	T	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	138187568	rs1679167	C	T	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	138189031	rs2347469	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	138189658	rs3813264	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr3	138191232	rs10935282	G	A	4864.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:174,210:0.55:384
chr3	138193025	.	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.345;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr3	138195529	rs1679169	C	T	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	138216173	.	T	TA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.189;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	138289163	rs1673608	T	C	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	138289221	rs1673607	C	T	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	138329862	rs811322	G	A	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	138341284	rs11303336	CT	C	390.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.588;QD=15.03;ReadPosRankSum=-1.021;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr3	138417989	rs361080	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	138433568	rs497900	C	T	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	138453782	.	TA	T	212	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=12;HapScore=2;MGOF=37;MMLQ=24;MQ=57.45;NF=3;NR=3;PP=212;QD=36.3333333333;SC=ATCAAGAAATTAAAAAAAAAA;SbPval=0.09;Source=Platypus;TC=16;TCF=3;TCR=13;TR=6;WE=138453790;WS=138453772;set=Platypus	GT:AD:AF:DP	1/1:10,6:0.38:16
chr3	138456486	.	A	AATATAT	658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.34;ReadPosRankSum=1.176;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr3	138668233	rs5852928	C	CGT	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	138668457	rs141282655	CGGCATTCGAA	C	1309.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:83,38:0.31:121
chr3	138724757	rs11924188	C	G	8214.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr3	138739617	rs1720230	A	G	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	138882076	rs9843067	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr3	139065988	rs1610195	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	139066902	rs10755092	A	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	139068008	rs11706615	T	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	139068277	rs10935321	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr3	139075644	rs9878548	C	A	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	139075938	rs7833	C	T	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	139077527	.	G	GA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.910;QD=0.69;ReadPosRankSum=1.887;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:129,28:0.18:157
chr3	139081416	rs57549985	TTA	T	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr3	139088481	rs11717119	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	139090736	rs7373116	G	A	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:60,113:0.65:173
chr3	139098357	rs9831108	A	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-0.885;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr3	139102120	rs7373302	C	A	7280.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	139108250	rs3215032	C	CTG	2065.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	139195177	rs2233815	C	T	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:96,69:0.42:165
chr3	139236683	rs2071388	C	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr3	139246382	rs295493	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	139257545	rs34662123	GC	G	1207.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr3	139257603	rs2071387	A	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:105,52:0.33:157
chr3	139258411	rs11549984	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:117,82:0.41:199
chr3	139280328	rs35898558	G	GA	1005.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	139297655	rs10513083	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr3	140122341	rs4683494	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	140167536	rs2081803	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr3	140251487	rs349536	T	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	140281723	rs11714465	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:95,55:0.37:150
chr3	140282084	rs4683509	C	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	140282718	rs74938120	T	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr3	140282861	rs10804675	C	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:169,61:0.27:230
chr3	140285115	rs4683510	T	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	140401693	rs698673	A	G	10229.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	140406947	rs28594654	G	A	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:281,180:0.39:461
chr3	140407260	rs9876490	C	A	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:150,90:0.38:240
chr3	140419715	rs1540506	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:86,38:0.31:124
chr3	140675348	.	CT	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.105;SOR=0.262;set=HC	GT:AD:AF:DP	0/1:35,25:0.42:60
chr3	140678384	.	TA	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.345;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr3	140682087	.	T	TA	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=12.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.419;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr3	140685085	rs34677627	A	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=1.517;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr3	140692486	rs2555707	G	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	140784929	rs6771494	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr3	140785175	rs890529	C	A	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:290,160:0.36:450
chr3	140978863	rs72982510	G	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr3	140978921	rs3796259	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:57,32:0.36:89
chr3	140979184	rs1511378	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	140998214	rs13087169	G	A	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	141272680	rs75293937	C	T	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:108,72:0.40:180
chr3	141634690	rs41265477	C	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.658;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr3	141635204	rs72988233	C	T	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.328;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:101,46:0.31:147
chr3	141641101	rs116144275	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr3	141644274	rs1131029	G	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	141682825	rs3792409	C	G	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr3	141709036	rs62283132	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.226;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	141709083	rs6440055	A	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	141709173	rs62283133	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=0.629;QD=7.05;ReadPosRankSum=-2.061;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	141721762	rs34464850	G	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr3	141812157	rs55884097	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	141812759	rs9877817	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr3	141890089	rs55726682	A	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	141891385	rs73236075	C	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	141923506	rs9830411	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr3	141932356	rs6440072	G	A	4607.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:165,215:0.57:380
chr3	142051147	rs4608715	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	142076059	rs3816805	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	142078759	rs73238159	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr3	142083776	rs3214978	T	TTA	537.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	142089971	.	C	CA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.167;QD=4.60;ReadPosRankSum=-1.151;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr3	142094816	rs113527448	G	GCACA	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=6.669;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.614;QD=7.09;ReadPosRankSum=-1.249;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr3	142116151	rs2291363	A	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr3	142122451	rs2306699	T	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr3	142123841	rs2306700	C	T	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:101,129:0.56:230
chr3	142133218	rs11714528	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr3	142168331	rs1802904	C	T	6413.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	142178144	rs2229032	C	T	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:79,84:0.52:163
chr3	142222074	rs11916455	C	T	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	142222284	rs2227931	A	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.968;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:60,32:0.35:92
chr3	142241692	rs112116713	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.895;QD=0.35;ReadPosRankSum=2.134;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:96,20:0.17:116
chr3	142255090	rs73240314	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	142259706	rs201551475	CA	C	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=1.467;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:29,60:0.67:89
chr3	142261339	rs11920625	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	142272275	.	AAC	A	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=5.465;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=4.524;QD=2.66;ReadPosRankSum=1.054;SOR=1.413;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr3	142272314	rs9869842	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	142277365	rs199661872	AAAAT	A,AAAATAAAT	6547.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=202;set=Intersection	GT:AF:DP	1/2:0.39,0.59:180
chr3	142277427	rs73240318	A	G	8743.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:191,361:0.65:552
chr3	142277536	rs2227929	A	G	7918.77	.	AC=1;AF=0.500;AN=2;DB;DP=1545;set=Intersection	GT:AD:AF:DP	0/1:1054,481:0.31:1535
chr3	142277575	rs2227930	A	T	36247.77	.	AC=2;AF=1.00;AN=2;DB;DP=1348;set=Intersection	GT:AD:AF:DP	1/1:0,1338:1.00:1338
chr3	142281612	rs2227928	A	G	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	142287047	rs62276447	T	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.440;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr3	142388513	rs3836386	AATG	A	622.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	142405348	rs11714087	T	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr3	142408606	rs6793735	G	A	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	142413407	rs6789958	C	T	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	142413600	rs13087943	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.210;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	142417070	rs3773504	G	A	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	142443441	rs78975236	G	A	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr3	142467310	rs56246347	C	T	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:59,104:0.64:163
chr3	142503605	rs7621642	G	A	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:138,197:0.59:335
chr3	142521224	rs11382953	C	CT	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.901;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	142522753	rs56239979	A	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr3	142523349	rs3821647	G	A	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:95,144:0.60:239
chr3	142523555	rs4259003	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr3	142524858	rs1132030	G	A	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr3	142537071	rs7772	C	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr3	142542244	rs45467800	C	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr3	142542449	rs17554211	G	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:152,94:0.38:246
chr3	142567327	rs893883	G	A	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:68,101:0.60:169
chr3	142607487	rs1457684	C	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	142607822	.	C	CGCTCACACTGGCAGCAGCGCTG	283.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	142669479	rs4683440	A	G	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:62,71:0.53:133
chr3	142670467	rs2270767	C	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	142730774	rs2124541	T	G	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.237;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:151,105:0.41:256
chr3	142773738	rs10935479	C	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.216;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr3	142839977	rs185111962	G	A	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:34,60:0.64:94
chr3	143214114	rs838598	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	143271176	rs1525862	C	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.043;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	143271396	rs77003891	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr3	143293012	rs6763202	A	G	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	143296258	rs35417581	A	C	5082.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:122,223:0.65:345
chr3	143297591	rs13076949	A	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr3	143412268	rs12488981	T	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	143530497	rs72993346	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	143567207	rs11714060	A	G	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	143692018	rs2279856	C	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:47,95:0.67:142
chr3	145788467	rs6710	T	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	145788803	rs2305274	T	C	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	145790948	rs7639592	A	G	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	145794776	rs142623177	CTTTA	C	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	145795559	rs9874388	A	G	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	145803138	rs1375583	T	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	145803142	rs1375582	T	A	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	145804524	rs3804668	C	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	145809750	rs3792341	T	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	145820684	rs3762691	G	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	145824478	rs9289716	A	G	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	145824504	rs7614409	G	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	145828256	rs3842573	G	GT	3987.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	145838895	rs4681297	C	T	11376.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr3	145841294	rs10663012	A	AAAAC	529.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	145841854	rs6802384	T	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	145912177	rs9815240	T	G	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr3	145912299	.	C	A	400.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	145924591	rs35080966	A	AT	452.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr3	145924632	rs3762688	C	T	239.80	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr3	145938528	rs3762686	C	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr3	145939691	rs3804648	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	145939916	rs116127418	T	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr3	146167163	.	C	CA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=0.391;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr3	146177594	.	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.033;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr3	146179745	rs147297614	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.445;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr3	146246288	rs2738909	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr3	146303750	rs342902	G	A	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	146307339	rs56763997	T	A	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	146307635	rs343289	C	A	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	146311589	rs12107668	C	T	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	146311937	rs147223969	CA	C	777.74	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:5,42:0.89:47
chr3	146312941	rs6787813	G	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	146313036	rs6787741	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	146322901	rs61435584	A	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	147111779	rs62273364	T	C	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,56:0.57:98
chr3	147111904	.	C	CCTCT	547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.526;QD=21.91;ReadPosRankSum=-1.556;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr3	147113586	rs73004638	A	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr3	147121629	.	ATC	A	22	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.4998;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=22;QD=15.0;SC=ATGCACAAAGATCTCTCTCTC;SbPval=0.23;Source=Platypus;TC=16;TCF=14;TCR=2;TR=2;WE=147121638;WS=147121619;set=Platypus	GT:AD:AF:DP	1/0:14,2:0.12:16
chr3	147121751	rs6766244	C	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,38:0.45:85
chr3	148459395	rs5182	C	T	1320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.666;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-0.906;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:183,70:0.28:253
chr3	148459884	rs5183	A	G	4610.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:174,216:0.55:390
chr3	148545434	rs73010114	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr3	148545575	rs73010115	C	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:40,81:0.67:121
chr3	148558447	rs2291671	G	A	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	148562310	rs1059502	G	A	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	148562397	rs13318851	G	C	11650.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	148562397	.	GAG	CAA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=13;MMLQ=15;MQ=59.99;NF=143;NR=96;PP=2947;QD=20;SC=AATACTGAGAGAGGCTGATGA;SbPval=0.62;Source=Platypus;TC=248;TCF=144;TCR=104;TR=239;WE=148562407;WS=148562387;set=Platypus	GT:AD:AF:DP	1/1:9,239:0.96:248
chr3	148562399	rs13318853	G	A	11650.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=1.111;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr3	148575476	rs3044024	C	CAA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.787;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	148597482	rs1032465	T	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	148597612	rs12489516	C	T	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	148603859	rs41267865	C	A	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:112,103:0.48:215
chr3	148714841	.	TTG	T	48	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=19;MQ=59.33;NF=0;NR=3;PP=48;QD=17.0;SC=CTGGGAAATATTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=20;TCF=1;TCR=19;TR=3;WE=148714850;WS=148714831;set=Platypus	GT:AD:AF:DP	1/0:17,3:0.15:20
chr3	148756825	rs6764352	G	A	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	148858987	rs10693502	C	CTTTTT	3699.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;QD=34.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:8,98:0.92:106
chr3	148868292	rs150286093	GC	G	712.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	148868361	rs2689232	C	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	148872987	rs6440589	G	A	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	148879878	rs61615092	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	148881673	rs3732557	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	148885077	rs2681092	C	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	148885779	rs11426099	A	AT	329.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	148885851	rs2681096	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	148890105	.	T	TCACA	242	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=3;MGOF=23;MMLQ=25;MQ=60.33;NF=1;NR=7;PP=242;QD=30.625;SC=ATTTTATATATCACACACACA;SbPval=0.42;Source=Platypus;TC=15;TCF=1;TCR=14;TR=8;WE=148890113;WS=148890095;set=Platypus	GT:AD:AF:DP	1/0:7,8:0.53:15
chr3	148896430	rs16861582	A	G	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	148897498	.	T	TAC	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.957;QD=15.67;ReadPosRankSum=-0.556;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr3	148916235	rs701753	T	A	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	148917762	rs186087404	C	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	148925299	.	G	T	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=2.202;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:235,62:0.21:297
chr3	148930096	rs34300334	T	A	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.96;ReadPosRankSum=-0.164;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr3	148930218	rs17847023	G	A	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:42,77:0.65:119
chr3	148935893	rs16861636	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr3	148939393	rs3736282	C	T	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.459;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:46,44:0.49:90
chr3	149050925	rs1526786	T	C	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:62,109:0.64:171
chr3	149087404	rs8479	T	C	71.84	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr3	149087714	rs6776940	T	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	149093238	rs4771	A	G	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,62:0.68:91
chr3	149192676	rs12488126	G	A	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr3	149192851	rs143312618	G	GC	2747.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:71,88:0.55:159
chr3	149243694	rs9854499	G	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	149258066	rs17787953	T	C	3820.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:146,183:0.56:329
chr3	149258970	rs5853413	CA	C	33.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr3	149290551	rs151014871	T	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	149290605	rs140400179	CA	C	290.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr3	149374578	rs63224761	TCA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=2.199;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr3	149459341	rs7633238	A	G	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	149488309	rs7630033	A	G	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,57:0.61:93
chr3	149488442	rs7630153	A	G	4653.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:170,223:0.57:393
chr3	149510262	rs4681554	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr3	149564075	rs6440641	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	149613232	rs143625944	ATT	A	693.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.302;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.68;ReadPosRankSum=0.625;SOR=1.866;set=HC	GT:AD:AF:DP	1/1:5,27:0.84:32
chr3	149619799	rs201293440	A	AAGTT	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr3	149678487	rs202087482	C	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr3	149678534	rs6768054	C	T	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:117,138:0.54:255
chr3	149679014	rs7856	T	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr3	149679148	rs61689176	T	TA	831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.451;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:35,52:0.60:87
chr3	149686366	rs35842204	AAC	A	1037.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=2.804;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:62,71:0.53:133
chr3	149686367	rs61268501	AC	A	541.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.019;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:96,50:0.34:146
chr3	150128154	rs61734437	T	C	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:263,158:0.38:421
chr3	150128484	rs3749400	C	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:81,63:0.44:144
chr3	150128994	rs34647320	T	G	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:300,157:0.34:457
chr3	150129171	rs3840253	A	AT	2350.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	150155875	rs141976953	T	TA	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	150262318	rs1533816	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	150276153	rs11379788	C	CT,CTT	589.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=24.57;SOR=1.802;set=HC	GT:AD:AF:DP	1/2:0,9,15:0.38,0.62:24
chr3	150282061	.	C	CT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.950;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr3	150282211	rs62269102	C	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	150286088	rs62283993	T	A	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	150332261	rs76738873	A	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	150384657	rs114572143	G	A	3296.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:110,146:0.57:256
chr3	150384807	rs6440691	T	G	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	150387059	rs17215176	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	150391810	rs73003074	A	C	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr3	150403749	rs4680107	T	C	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	150420588	rs10663389	G	GTTAAA	5986.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.68;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	150420608	rs71138466	G	GT	1426.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-0.093;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:18,89:0.83:107
chr3	150420781	rs111995561	C	CAG,CAGAG	494.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.98;ReadPosRankSum=1.514;SOR=0.793;set=HC	GT:AD:AF:DP	1/2:1,5,9:0.33,0.60:15
chr3	150421419	rs17281287	G	A	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	150603248	rs57919280	G	GAAAAGC	10998.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:4,249:0.98:253
chr3	150690566	rs3796240	T	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	150804835	rs144250947	C	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr3	150804908	rs7653870	T	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.674;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	150834015	rs4680158	G	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	150845574	rs1897296	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr3	150883600	rs2567322	C	T	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:86,81:0.49:167
chr3	150903122	rs16863238	G	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr3	150906062	rs76391037	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr3	150910640	rs1231520	G	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	150911405	rs3732755	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:57,20:0.26:77
chr3	150916327	rs3732756	T	C	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=2.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.612;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:192,69:0.26:261
chr3	151011944	rs12492699	A	C	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr3	151011969	rs1048408	G	A	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=1.500;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:43,54:0.56:97
chr3	151012497	rs2242353	T	C	13277.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr3	151045661	rs1491980	G	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	151046308	rs1466684	G	A	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	151056598	rs6809699	A	C	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	151056616	rs6785930	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr3	151067730	rs1565574	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr3	151073033	rs7615865	T	C	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	151073937	rs1994730	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	151074925	rs3732759	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:48,21:0.30:69
chr3	151074941	rs3732760	A	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr3	151085578	rs3732764	C	A	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	151090424	rs3732765	G	A	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	151096112	rs12497065	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	151100677	rs3821663	T	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	151101691	rs10935841	C	T	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	151101746	rs12485508	C	T	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	151108070	rs56194873	GT	G	493.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	151131183	rs2276764	G	A	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	151143354	rs10653830	T	TTG	1759.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=5.096;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.469;QD=28.85;ReadPosRankSum=-0.488;SOR=0.129;set=HC	GT:AD:AF:DP	1/1:5,56:0.92:61
chr3	151143447	rs6440742	G	T	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr3	151154666	rs2172250	T	C	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	151155620	rs6781302	G	A	9633.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr3	151158184	rs937126	A	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	151158265	rs937125	G	A	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	151158502	rs10663807	T	TAG	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	151165678	rs9871952	T	C	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	151166422	rs6798252	C	T	9326.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr3	151171439	rs7619322	A	C	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	151171542	rs7621591	A	G	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	151283646	rs7631281	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	151463421	rs1972977	G	T	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	151542408	rs148745568	AAAAC	A	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.873;QD=22.30;ReadPosRankSum=-0.191;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	151542737	rs13098550	G	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr3	151542749	rs151253803	CTATT	C	703.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr3	151545318	rs2410837	A	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.290;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.76;ReadPosRankSum=0.386;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr3	151545321	rs11306821	GT	G	598.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.38;ReadPosRankSum=-0.279;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	151545323	rs62272918	T	G	607.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.71;ReadPosRankSum=-0.395;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	151545601	rs1803155	G	A	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:113,174:0.61:287
chr3	151546041	rs1042201	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr3	151986434	rs61743371	G	C	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	152058449	rs13077912	A	G	7809.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	152554357	rs701265	A	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:181,103:0.36:284
chr3	153839866	rs12493885	G	C	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	153839959	rs59508481	CT	TC	11680.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	153840413	rs373508464	C	T	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:218,146:0.40:364
chr3	153847582	rs1626280	T	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	153870511	rs1727956	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	153912641	rs12330779	C	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr3	153970704	rs2307750	CTT	C	666.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr3	153970796	rs355752	A	G	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	153972500	rs355749	T	C	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	153973408	rs3172332	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	153994502	rs355787	T	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.26;SOR=1.673;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	153994502	.	TG	CA,CG	422	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=19,49;NR=8,15;PP=314,422;QD=13.6099212912;SC=CTGACTTACATGTAGATTTAA;SbPval=0.41;Source=Platypus;TC=66;TCF=49;TCR=17;TR=27,64;WE=153994511;WS=153994492;set=Platypus	GT:AF:DP	0/1:0.41:66
chr3	153994503	rs9289943	G	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=1.019;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr3	154002357	rs200020002	A	AT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.479;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr3	154007682	rs355758	G	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	154010515	rs146770800	AACACAC	A,AACAC	1539.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.320;QD=33.47;ReadPosRankSum=-0.028;SOR=2.137;set=HC	GT:AD:AF:DP	1/2:2,20,24:0.43,0.52:46
chr3	154018690	rs3732652	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:143,83:0.37:226
chr3	154018887	rs9438	G	C	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:42,100:0.70:142
chr3	154021063	rs355756	G	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.51;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	154024165	rs355754	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	154802920	rs4607069	T	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	154834379	.	GTA	G	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.174;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr3	154857897	rs10935999	C	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	154866453	rs1436633	T	C	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:49,78:0.61:127
chr3	154866545	rs1436632	A	C	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.252;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=13.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-0.582;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr3	154878158	rs35450782	GA	G	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	154890206	rs3816803	G	A	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr3	154890512	.	C	CTT	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=4.066;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.682;QD=10.62;ReadPosRankSum=0.707;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr3	154898407	rs701109	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	155212325	rs3214639	G	GA	2817.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	155241593	rs9840061	A	G	5565.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	155241740	rs9840234	A	G	15166.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr3	155285939	rs79162523	C	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	155485302	rs358733	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr3	155522044	rs63242260	ATAT	A	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	155523375	rs10563990	GCGCA	G	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	155523850	rs12486921	T	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:62,87:0.58:149
chr3	155551206	rs7649631	C	T	1637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=1.429;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:34,70:0.67:104
chr3	155551894	rs422497	A	G	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr3	155571275	rs3804769	T	C	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:87,142:0.62:229
chr3	155611239	rs74740515	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr3	155611557	rs6441026	T	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.51;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	155623942	rs61750368	T	C	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr3	155628877	rs10936021	T	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	155632075	rs12485735	C	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr3	155632314	rs61750369	A	G	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:76,113:0.60:189
chr3	155637190	rs1356252	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	155639959	rs3772117	A	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	155642986	rs76515101	C	T	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:72,103:0.59:175
chr3	155643187	rs75611544	T	C	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.288;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.057;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.486;QD=20.81;ReadPosRankSum=-1.093;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr3	155643189	rs200488171	CTTT	C	1034.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.596;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=1.479;QD=21.12;ReadPosRankSum=-1.809;SOR=2.655;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr3	155654432	.	T	A	55	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=9;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=55;QD=29.9237375157;SC=CTTTTTTTTTTAAATTTTCAC;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=155654440;WS=155654422;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	155991348	rs1160221	G	T	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:161,92:0.36:253
chr3	156009925	rs1551066	C	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,53:0.46:114
chr3	156175109	rs34093583	C	CTT	1320.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr3	156175167	rs2293194	GG	AA	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;JOINED;set=Intersection	GT:AD:AF:DP	0/1:61,63:0.51:124
chr3	156234268	rs4295133	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	156249214	rs2280031	T	C	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=0.244;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:51,85:0.62:136
chr3	156249407	rs2280030	G	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr3	156261110	rs1983206	T	C	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-2.083;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr3	156262232	rs6792998	C	G	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=-1.165;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:25,57:0.70:82
chr3	156266642	rs6809188	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	156395329	rs345986	G	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	156411732	rs193197	A	G	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	156413615	rs10631452	C	CT,CTT	921.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=-0.149;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:4,12,32:0.25,0.67:48
chr3	156431750	rs61733487	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	156544584	rs344071	C	T	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	156547013	rs344073	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr3	156697097	rs6780427	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr3	156864398	rs370594663	TAAAAAA	T	913.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.05;ReadPosRankSum=1.528;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr3	156864419	.	TA	T	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.768;QD=10.46;ReadPosRankSum=0.914;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:18,34:0.65:52
chr3	156864551	rs6783595	T	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr3	156867776	rs377312008	G	GAA	1155.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr3	156870059	rs73154633	C	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:16,54:0.77:70
chr3	156870816	rs41272613	A	G	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:158,197:0.55:355
chr3	156876502	rs6441114	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr3	156876574	rs6441115	A	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr3	156876803	rs6441116	T	G	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr3	156877276	rs59715654	CAA	C	2489.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;MQ=60.38;set=Intersection	GT:AD:AF:DP	0/1:47,65:0.58:112
chr3	156877357	rs10936061	T	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr3	156877530	rs12635088	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=0.151;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr3	156978919	rs11398653	A	AT	6127.73	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:110,194:0.64:304
chr3	156983273	rs3749214	A	G	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr3	156983414	rs7652298	T	C	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:81,130:0.62:211
chr3	157004284	.	G	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.605;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr3	157004323	rs4680353	A	C	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	157081324	rs11918974	A	G	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:72,90:0.56:162
chr3	157081604	rs55865575	A	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr3	157082082	rs3833585	C	CAA	1511.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	157146005	rs9289983	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	157146307	rs1456099	A	T	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr3	157154861	rs2305619	A	G	6792.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	157155314	rs3816527	C	A	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	157188045	rs1456113	A	G	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	157188378	rs1011060	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr3	157296325	.	CAT	C	54	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=2;MGOF=21;MMLQ=19;MQ=60.0;NF=0;NR=5;PP=54;QD=11.8;SC=CCAAAAAGTACATATATATAT;SbPval=1.0;Source=Platypus;TC=23;TCF=1;TCR=22;TR=5;WE=157296334;WS=157296315;set=Platypus	GT:AD:AF:DP	0/1:18,5:0.22:23
chr3	157817517	rs9833383	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	157820423	rs4462902	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr3	158306627	rs1075551	A	G	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:147,75:0.34:222
chr3	158308875	rs2566339	T	C	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.895;QD=8.30;ReadPosRankSum=-1.264;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr3	158310153	rs6771248	A	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr3	158310483	rs6780477	G	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.209;SOR=2.168;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr3	158314810	rs45471897	C	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-0.121;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr3	158320597	rs4875	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr3	158320703	rs15967	C	A	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.341;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr3	158362391	rs28372852	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.033;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.935;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr3	158362441	rs1864507	T	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr3	158362526	rs1864506	A	G	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:123,69:0.36:192
chr3	158362588	rs1864505	C	G	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-1.273;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:138,61:0.31:199
chr3	158366900	rs2303909	G	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.032;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr3	158367837	rs56167308	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-0.596;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr3	158369789	rs56362855	T	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.562;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.318;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr3	158369798	rs9810874	A	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.462;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr3	158372477	rs62286656	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr3	158372502	rs9884039	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	158384068	rs7628497	A	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-0.056;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:86,56:0.39:142
chr3	158386737	rs1492909	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	158387487	rs6441215	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr3	158388721	rs56093991	C	CAAAGAAA	250.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	158388780	rs8455	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.360;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr3	158390136	rs112809766	C	T	4966.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:146,227:0.61:373
chr3	158390395	rs9841	A	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	158399757	rs11436468	A	AT	289.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr3	158409093	rs145803239	C	CA	479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.654;QD=3.84;ReadPosRankSum=0.680;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:91,34:0.27:125
chr3	158409262	rs1047355	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	158422506	rs4680457	G	A	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-0.070;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr3	158428642	rs2307064	G	A	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:182,128:0.41:310
chr3	158431508	rs2279562	A	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chr3	158431702	rs2279561	A	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr3	158449965	rs6441223	T	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-1.235;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	158450178	rs6786423	A	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.151;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:69,27:0.28:96
chr3	158450417	rs6441224	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.45;ReadPosRankSum=-0.849;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	158520483	rs2713736	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	158523119	.	GAAAA	G	1052.73	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr3	158526942	.	G	GT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=4.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.193;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr3	158537415	rs146160361	CTTTTT	C	3848.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	158537443	rs3765083	A	G	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	158539294	rs1548092	G	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr3	158539486	rs1548093	A	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr3	158539544	rs73158377	T	C	40.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	158539961	rs6793618	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr3	158545195	rs6792827	G	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.722;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr3	158546552	rs75704067	ATATT	A	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	158970714	rs1020470	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	158991724	rs2621285	A	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	159733600	rs589545	G	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr3	159733692	rs491966	T	C	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.155;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-0.595;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr3	159736893	rs2647930	T	C	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:152,76:0.33:228
chr3	159737076	rs2647931	G	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:115,70:0.38:185
chr3	159744277	rs2936300	C	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	159744352	rs2279742	C	T	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	159744438	rs2914119	C	T	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	159744440	rs2936301	C	T	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	160003677	rs2275151	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr3	160021681	rs4680576	G	A	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=1.979;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:22,55:0.71:77
chr3	160025410	rs146285406	C	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.56;ReadPosRankSum=-0.825;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	160130110	rs2305407	G	A	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-1.696;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,38:0.58:66
chr3	160135428	rs1451760	C	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr3	160137363	rs142795307	C	CT	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.086;QD=10.07;ReadPosRankSum=-1.350;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr3	160141137	.	GTTTTTTTTTGTT	G	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.86;ReadPosRankSum=1.383;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	160142618	rs11718121	A	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=1.492;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr3	160142810	.	A	ATG	698	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=30;MMLQ=23;MQ=60.0;NF=0;NR=6;PP=698;QD=116.833333333;SC=GCATCCAGGTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=6;WE=160142819;WS=160142800;set=Platypus	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	160148756	rs7631792	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr3	160223032	rs721022	C	T	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	160233406	.	C	CT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=4.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.461;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr3	160243709	rs182490684	T	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.49;ReadPosRankSum=-0.475;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	160245732	rs41272963	T	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-1.121;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr3	160283126	rs4621370	A	C	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:37,89:0.71:126
chr3	160395093	rs1879797	A	G	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=7.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=0.521;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:30,42:0.58:72
chr3	160474540	rs71302254	C	CGTGTGTGT	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	160679422	rs7616249	T	C	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr3	160679744	rs7629001	A	T	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	160739920	.	AT	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.232;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr3	160821929	rs7651087	T	C	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr3	160821969	rs7617204	A	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr3	160939732	rs148371722	A	AATCCCAAC	1768.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=43.14;ReadPosRankSum=2.067;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:4,37:0.90:41
chr3	160939746	.	CTTTTTTTTTTTTTTTTT	C	2072.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.314;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=10.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.69;ReadPosRankSum=2.355;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:7,48:0.87:55
chr3	160939776	rs28711573	T	A	2202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=12.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.17;ReadPosRankSum=2.181;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:12,61:0.84:73
chr3	160945225	.	A	AT	50.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.60;ReadPosRankSum=0.601;SOR=3.901;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	160955879	rs4350933	G	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.500;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr3	160955882	rs200517975	CTT	C	665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.17;ReadPosRankSum=0.929;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr3	160956753	rs144462149	A	ATTT	118.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr3	160964271	rs73026976	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr3	160967354	rs4290817	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr3	160970437	rs6789388	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=1.605;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr3	161064193	rs339101	A	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr3	161090616	rs2054710	C	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr3	161147223	.	G	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=48.14;MQRankSum=-1.669;QD=2.20;ReadPosRankSum=-1.318;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:55,8:0.13:63
chr3	161147228	.	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.05;MQRankSum=-1.941;QD=2.01;ReadPosRankSum=-1.302;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:58,8:0.12:66
chr3	161147239	.	C	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.15;MQRankSum=-2.295;QD=2.36;ReadPosRankSum=-0.621;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:61,8:0.12:69
chr3	161147240	.	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=50.19;MQRankSum=-2.307;QD=2.29;ReadPosRankSum=-1.185;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr3	161147247	.	G	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.415;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=50.60;MQRankSum=-2.446;QD=3.34;ReadPosRankSum=-2.076;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:62,11:0.15:73
chr3	161147275	.	C	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.003;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=6.833;MLEAC=1;MLEAF=0.500;MQ=54.50;MQRankSum=-4.649;QD=2.25;ReadPosRankSum=0.059;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:79,12:0.13:91
chr3	161147279	.	T	C	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=4.577;MLEAC=1;MLEAF=0.500;MQ=55.22;MQRankSum=-5.144;QD=2.25;ReadPosRankSum=0.482;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:83,12:0.13:95
chr3	161147285	.	C	T	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=4.717;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-5.260;QD=1.98;ReadPosRankSum=1.705;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:91,11:0.11:102
chr3	161147301	.	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=4.938;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-5.130;QD=0.76;ReadPosRankSum=2.694;SOR=1.587;set=HC	GT:AD:AF:DP	0/1:101,10:0.09:111
chr3	161147306	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=4.857;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-5.410;QD=0.38;ReadPosRankSum=2.879;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:109,10:0.08:119
chr3	161147313	.	T	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=4.796;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-5.402;QD=0.30;ReadPosRankSum=2.676;SOR=1.527;set=HC	GT:AD:AF:DP	0/1:113,10:0.08:123
chr3	161147320	.	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=4.307;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-6.145;QD=0.93;ReadPosRankSum=1.816;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:118,12:0.09:130
chr3	161216812	rs1506481	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	161216845	rs1506482	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=1.960;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	161216860	rs1506483	T	C	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	161216912	rs1506484	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr3	161217218	rs41386047	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	161220790	.	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.642;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr3	161221705	rs3921595	A	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=2.845;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:54,35:0.39:89
chr3	164059249	rs370368697	A	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr3	164714532	rs4855271	C	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	164733721	rs2290738	G	A	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	164748665	rs11452619	C	CA	91.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.38;ReadPosRankSum=0.464;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,6:0.75:8
chr3	164751319	rs7611384	T	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr3	164758630	rs13099130	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	164758990	rs201310737	G	GT	64.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	164764719	rs9838509	C	A	8662.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr3	164766807	rs200218470	T	TAA	1312.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	164766808	rs67477789	TC	T	1444.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	164766816	rs9821196	C	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	164766835	rs9841237	T	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	164772957	rs9290256	C	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	164773057	rs9290257	G	A	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	164776913	rs60170840	C	CAT	8519.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	164777677	rs9290259	T	G	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	164781368	rs11718901	G	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	164783165	rs9283633	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	164785338	rs9865476	G	A	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	164786382	rs9758479	C	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	164786396	rs9754967	T	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	164786413	rs9756068	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	164786629	rs11313475	TA	T	1538.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	164793541	rs7432386	G	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	165495400	rs2686409	G	A	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	165495420	rs2686410	G	C	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	165496622	rs2686411	A	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	166966436	rs60512741	C	T	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr3	167000256	rs12638625	G	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr3	167006568	rs7625639	G	T	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:59,88:0.60:147
chr3	167006612	rs7625651	G	T	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:120,161:0.57:281
chr3	167035501	rs4580553	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr3	167040185	rs12632964	A	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr3	167045701	.	C	CA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.27;ReadPosRankSum=-0.685;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	167045759	rs78885988	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:122,61:0.33:183
chr3	167051726	rs10936530	A	G	533.18	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr3	167077691	rs4257551	T	A	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	167078544	rs9834845	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	167083844	rs115866120	T	C	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	167167186	rs6770577	T	A	4307.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:109,192:0.64:301
chr3	167184878	rs9841174	T	C	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:57,124:0.69:181
chr3	167191652	rs4129073	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr3	167218163	rs78968180	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr3	167351418	rs9845725	T	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr3	167422537	rs116154329	C	T	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=-2.711;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr3	167540741	rs11284733	GA	G	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.176;QD=4.92;ReadPosRankSum=0.545;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:55,34:0.38:89
chr3	167727905	rs184213756	T	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr3	167745703	rs9861339	A	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	167754573	rs6786410	A	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	167754852	.	A	ATCTATGAATGCCCATTCATAGATGGGCATTTGT	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.62;MQRankSum=3.271;QD=10.35;ReadPosRankSum=-0.207;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr3	167762678	rs57702503	C	CA	947.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.455;QD=13.16;ReadPosRankSum=-0.494;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:16,56:0.78:72
chr3	167764594	rs10663226	C	CAA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.465;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	167764820	rs77249029	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=0.819;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	168538993	rs603638	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.031;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:46,16:0.26:62
chr3	168542454	.	T	TCACACA	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.000;QD=7.93;ReadPosRankSum=0.952;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr3	168546914	rs678690	C	T	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:170,105:0.38:275
chr3	168818560	rs9857376	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	168819788	rs9290358	A	G	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	168825599	rs182510479	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	168825911	rs4955639	T	C	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	168840571	rs3851380	A	T	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	168840607	rs3851381	C	T	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	168862965	.	CACACACACACACAGAG	C	462.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=2.199;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:3,23:0.88:26
chr3	169098861	rs988398	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr3	169574465	rs11919269	T	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:150,95:0.39:245
chr3	169639050	rs61420799	C	T	6323.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:198,292:0.60:490
chr3	169643757	rs1290671	G	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	169643955	rs1290670	C	T	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:88,107:0.55:195
chr3	169654095	rs76313862	A	G	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.717;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:41,42:0.51:83
chr3	169684687	rs2072576	G	C	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-0.208;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:43,68:0.61:111
chr3	169710363	rs2160898	G	T	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:55,72:0.57:127
chr3	169801658	rs6444895	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	169894680	rs1386333	G	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-0.373;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:52,38:0.42:90
chr3	169980956	.	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=0.842;QD=5.17;ReadPosRankSum=-0.030;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	169988364	.	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-0.437;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr3	169998240	.	C	CT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.062;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr3	170078232	rs3772173	C	T	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:142,166:0.54:308
chr3	170105233	rs6786374	C	T	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr3	170105378	rs6786542	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:88,73:0.45:161
chr3	170197954	rs989997	T	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	170198898	rs3732449	C	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:94,63:0.40:157
chr3	170198942	rs114883808	C	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr3	170198967	rs1861939	G	A	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr3	170425809	rs58704061	T	C	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:124,83:0.40:207
chr3	170784256	.	A	AT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.067;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr3	170797521	rs114275242	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-1.233;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	170801912	rs371989911	TA	T	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.390;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.800;QD=2.97;ReadPosRankSum=1.209;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chr3	170825905	rs6444960	C	G	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	170846676	.	CA	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.769;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr3	170857167	.	G	GCACACACACACA,GCACACACACACACA	599.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=14;set=Intersection	GT:AF:DP	1/1:1.00:10
chr3	170857240	rs6444965	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	170858406	rs2292006	T	G	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	171065010	rs3082367	G	GA	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.263;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:96,36:0.27:132
chr3	171065031	rs1389047	G	C	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	171087469	rs3796295	G	A	7196.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr3	171338237	rs9881788	T	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr3	171395468	rs2124147	A	G	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:104,65:0.38:169
chr3	171405384	rs2305547	A	T	58.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr3	171442635	rs7647840	C	T	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:288,133:0.32:421
chr3	171442750	rs10710862	AG	A	1637.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,50:0.45:112
chr3	171443607	rs4131284	C	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr3	171443626	.	G	A	290.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	171443955	rs4131283	T	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr3	171510238	rs3934620	C	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:72,25:0.26:97
chr3	171844787	rs4894810	A	T	6826.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr3	172003831	.	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.265;QD=1.41;ReadPosRankSum=1.907;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr3	172052897	rs71300460	G	GT	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.056;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.441;QD=2.90;ReadPosRankSum=1.061;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:68,34:0.33:102
chr3	172059121	rs570549	G	A	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	172060700	rs606797	C	T	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	172064091	rs583550	G	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	172064335	rs55676402	A	ATTT	521.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.72;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:4,18:0.82:22
chr3	172070668	rs143064249	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:154,89:0.37:243
chr3	172162829	rs482204	G	A	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.887;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.42;ReadPosRankSum=1.066;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr3	172162837	rs477251	T	C	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.154;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.15;ReadPosRankSum=0.407;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr3	172166033	rs495225	G	A	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:92,135:0.59:227
chr3	172224303	rs1131532	A	G	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	172224769	rs111284464	GC	G	2712.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	172224771	rs17848019	T	A	2721.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	172227199	rs3815496	C	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	172365619	rs9865941	G	A	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	172428508	rs7629698	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-1.243;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr3	172428782	rs2276805	T	C	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-0.719;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:92,68:0.42:160
chr3	172473484	rs1403088	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=0.842;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr3	172480173	rs10654513	A	ATT	79.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	172480174	rs11313111	AC	A	79.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	172501443	rs7649589	A	C	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	172520818	rs7644191	G	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	172534428	rs10936738	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr3	172537850	rs35236458	T	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr3	172634025	rs141570329	T	TTG	728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=8.883;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=1.151;QD=11.21;ReadPosRankSum=0.426;SOR=1.997;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr3	172834945	.	C	T	1519.77	.	AC=1;AF=0.500;AN=2;DP=256;set=Intersection	GT:AD:AF:DP	0/1:168,87:0.34:255
chr3	173322248	rs3844523	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	173507395	rs4499633	T	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	174581888	rs6445184	T	C	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	174814738	rs9823911	G	A	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	174814920	rs9836841	A	G	9074.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr3	174935828	rs34537026	C	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr3	174951756	rs4371530	T	C	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:64,84:0.57:148
chr3	175087275	rs9869507	A	G	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	175087408	rs78831152	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	175165079	rs6802937	C	T	8970.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr3	175165201	rs2161041	T	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr3	175189406	rs35213579	CT	C	1114.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:52,68:0.57:120
chr3	175205148	rs7646041	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr3	175205221	rs62287072	T	G	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:83,77:0.48:160
chr3	175293752	rs62285573	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	175345143	rs9866564	C	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.123;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr3	175373483	rs376781296	TAAATA	T	654.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=40.92;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	175455116	rs62286105	A	G	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.517;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:87,101:0.54:188
chr3	175473047	rs9826737	T	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	176765253	rs1201300	G	A	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	176771833	.	CGTGTGTGT	C	733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.67;ReadPosRankSum=-0.811;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr3	178542417	rs9857119	A	C	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.203;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr3	178545952	rs35616186	C	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr3	178546026	rs9831934	T	C	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:56,97:0.63:153
chr3	178560581	rs6443583	A	C	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:74,87:0.54:161
chr3	178785549	rs6772028	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr3	178921639	rs2699895	C	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	178922274	rs2699896	C	A	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	178922430	rs3729679	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	178927645	rs3729681	C	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	178939018	rs3729689	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	178942431	rs2699889	C	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	178968634	rs7645550	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:83,49:0.37:132
chr3	178984575	rs7612684	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr3	179051472	rs35983049	A	G	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr3	179085722	.	G	GTA	30	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=5;HapScore=2;MGOF=25;MMLQ=18;MQ=60.0;NF=0;NR=1;PP=30;QD=37.0;SC=GGGGGAAAAAGTATATATATA;SbPval=1.0;Source=Platypus;TC=3;TCF=1;TCR=2;TR=1;WE=179085730;WS=179085712;set=Platypus	GT:AD:AF:DP	1/0:2,1:0.33:3
chr3	179092989	rs9865666	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	179096006	rs35435588	C	CA	353.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-0.066;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr3	179096508	rs7637065	C	G	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	179103342	rs200984893	C	CT	268.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.67;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	179109735	rs2287209	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	179137273	rs1362650	A	G	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	179291308	rs71907893	CT	C,TT	1580.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=21.08;SOR=2.599;set=HC	GT:AD:AF:DP	1/2:0,53,22:0.71,0.29:75
chr3	179291309	rs6443658	T	C	54.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.066;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.603;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.588;QD=0.52;ReadPosRankSum=0.040;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:84,21:0.20:105
chr3	179298584	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.329;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr3	179298999	rs1132429	C	T	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:104,156:0.60:260
chr3	179304255	rs9818068	G	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	179305654	rs6443659	A	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	179320386	rs371595016	CG	C	39.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr3	179448066	rs11309768	AT	A	1445.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:3,73:0.96:76
chr3	179448383	rs3213761	C	T	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=0.535;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:41,51:0.55:92
chr3	179481971	rs71917525	CTG	C	811.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr3	179527459	rs111620765	G	GA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.26;ReadPosRankSum=-1.090;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	179592053	rs1609981	G	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	179605647	rs41265425	C	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr3	179689264	rs3774256	T	C	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:37,62:0.63:99
chr3	179689365	rs3774257	C	T	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:60,71:0.54:131
chr3	179691094	rs12054457	G	A	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:86,123:0.59:209
chr3	180322248	.	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=8.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.102;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr3	180334623	rs7612917	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:59,50:0.46:109
chr3	180365043	rs34160752	T	TA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.910;QD=9.37;ReadPosRankSum=0.378;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	180365956	rs6769457	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr3	180372433	.	G	GA	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.634;QD=2.89;ReadPosRankSum=0.656;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr3	180679156	rs7428473	G	A	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.70;QD=18.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	180693215	.	GT	G	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.276;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr3	182546017	rs9814205	C	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr3	182576923	rs645597	T	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr3	182590354	rs771156	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr3	182598863	rs796406	A	G	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr3	182623765	rs6768094	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	182631792	rs11925959	C	A	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr3	182681740	rs4859146	C	T	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	182681853	rs4859147	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	182735182	rs6786878	C	A	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr3	182755209	rs2270968	T	G	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	182757013	rs140957052	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:69,51:0.42:120
chr3	182757084	rs2270967	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	182790249	rs7622479	G	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	182804385	rs6806083	G	A	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	182810144	rs3732604	T	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:82,53:0.39:135
chr3	182817328	rs937652	C	G	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:343,226:0.40:569
chr3	182853670	rs482912	T	C	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	182858287	rs522235	C	T	8294.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	182858461	rs831256	A	G	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	182870082	rs682396	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	182870436	rs514636	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	182871962	rs653316	C	T	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	182880629	rs602762	A	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	182913092	rs577136	T	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	182925404	rs6804951	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr3	182945948	rs189913070	A	T	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr3	182946002	rs6803121	A	G	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:124,73:0.37:197
chr3	182987591	rs115825683	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr3	183027542	rs7639705	T	G	3353.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:93,151:0.62:244
chr3	183028303	rs57067370	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	183028331	rs56662557	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr3	183028450	rs60284418	CA	C	553.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr3	183028600	rs1105132	A	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr3	183029331	rs3732595	C	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr3	183211906	rs1520101	A	G	7379.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	183368216	rs3755648	A	T	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.116;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.782;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:194,105:0.35:299
chr3	183368891	rs2293031	C	T	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:159,95:0.37:254
chr3	183433114	.	G	A	881.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:81,43:0.35:124
chr3	183439972	rs3841649	A	AG	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr3	183440066	.	CTTTTTTTT	C	449	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=21;HapScore=2;MGOF=41;MMLQ=26;MQ=59.51;NF=1;NR=8;PP=449;QD=50.2222222222;SC=GAAACCAAATCTTTTTTTTTT;SbPval=0.57;Source=Platypus;TC=11;TCF=1;TCR=10;TR=9;WE=183440081;WS=183440056;set=Platypus	GT:AD:AF:DP	1/0:2,9:0.82:11
chr3	183476685	rs262993	G	A	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:104,205:0.66:309
chr3	183480108	rs3830564	ATGT	A	588.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr3	183491340	rs262961	T	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr3	183491720	rs262960	T	C	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr3	183493743	rs146705467	CGGA	C	1619.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr3	183493991	rs2606220	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr3	183510782	rs263022	T	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr3	183521133	rs263042	A	G	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr3	183524193	rs263034	T	C	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=1.856;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:51,69:0.57:120
chr3	183524349	rs263033	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	183524379	rs263032	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	183524948	rs263031	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr3	183528442	rs263024	C	T	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr3	183535094	rs2582091	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	183535763	rs897604	A	G	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:29,74:0.72:103
chr3	183536063	rs894000	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr3	183558402	rs3732581	C	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.282;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.793;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:57,34:0.37:91
chr3	183560195	rs13091	A	G	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-3.142;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:34,34:0.50:68
chr3	183560292	rs7652031	A	T	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-0.411;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:29,30:0.51:59
chr3	183562276	rs3811725	A	C	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:20,4:0.17:24
chr3	183604723	rs1829515	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:79,29:0.27:108
chr3	183604801	rs4420923	G	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr3	183679574	.	AT	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-2.178;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr3	183754029	rs6792482	T	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr3	183754278	rs73183412	C	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=1.134;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:81,28:0.26:109
chr3	183754294	rs6443930	G	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:76,32:0.30:108
chr3	183755822	rs1000952	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr3	183756426	rs6799766	T	C	1834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-11.190;QD=7.03;ReadPosRankSum=2.872;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:163,98:0.38:261
chr3	183756702	rs6789754	G	A	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:318,195:0.38:513
chr3	183756742	rs55674402	C	T	4264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.523;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.435;QD=6.96;ReadPosRankSum=1.186;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:383,230:0.38:613
chr3	183756780	rs6765152	A	C	3874.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:335,208:0.38:543
chr3	183756808	rs6789882	G	A	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:260,169:0.39:429
chr3	183756836	rs11274156	A	AT,ATGTCAGTCCAAAT	3892.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=308;set=Intersection	GT:AF:DP	0/1:0.37:292
chr3	183756837	rs66883074	G	GTCAGTCCAAATT	3893.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=6.291;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.671;QD=13.57;ReadPosRankSum=1.188;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:183,104:0.36:287
chr3	183774762	rs6766410	C	A	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	183774872	rs11432832	G	GA	4081.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	183776469	rs7617316	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	183777919	rs6807271	G	A	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr3	183778010	rs6807362	G	C	13413.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:1,458:1.00:459
chr3	183815439	rs6765267	A	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	183818416	rs7627615	G	A	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:97,156:0.62:253
chr3	183818511	rs55683908	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr3	183819155	rs7432211	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:71,41:0.37:112
chr3	183822504	.	CAAA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=-1.834;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	183823576	rs4912524	T	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	183823863	rs150341032	G	GAAGA	1565.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:78,44:0.36:122
chr3	183856549	rs6787322	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.526;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr3	183861243	rs843358	A	G	4156.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:118,195:0.62:313
chr3	183861750	rs843357	A	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	183884780	rs200755765	G	A	8319.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:256,405:0.61:661
chr3	183884895	rs1709638	C	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,56:0.57:98
chr3	183888015	rs147393618	G	A	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:456,271:0.37:727
chr3	183896641	rs2231216	T	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr3	183900680	rs843366	G	C	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:62,99:0.61:161
chr3	183900729	rs843365	T	C	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:63,94:0.60:157
chr3	183900836	rs843364	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr3	183903935	rs16833781	C	CG	1224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.229;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=32.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=0.913;SOR=4.645;set=HC	GT:AD:AF:DP	0/1:35,48:0.58:83
chr3	183904049	rs11539876	A	G	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.858;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.709;QD=6.24;ReadPosRankSum=-0.453;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:251,128:0.34:379
chr3	183904232	rs1709624	T	A	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	183905103	rs2942056	G	C	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=1.254;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr3	183906515	rs843345	T	C	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:45,74:0.62:119
chr3	183907032	rs843344	G	C	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:55,83:0.60:138
chr3	183951135	rs729377	C	T	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:161,111:0.41:272
chr3	183951431	rs902417	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr3	183952773	rs9853525	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:65,23:0.26:88
chr3	183953972	rs1709657	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr3	183955109	rs843334	C	T	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:165,112:0.40:277
chr3	183957095	rs843333	A	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	183957467	rs843332	G	T	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:189,93:0.33:282
chr3	183959508	rs28606531	A	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:69,52:0.43:121
chr3	183959961	rs2668195	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr3	183960252	rs706584	A	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr3	183975365	rs7633387	C	T	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	183976108	rs902415	T	C	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:103,56:0.35:159
chr3	183976241	rs6767237	A	G	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:202,105:0.34:307
chr3	183978846	rs843352	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr3	183994536	rs843371	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:102,39:0.28:141
chr3	183996213	rs843372	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr3	184010048	rs3914188	G	C	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:129,80:0.38:209
chr3	184016991	rs2272475	TT	GC	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;JOINED;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	184017218	rs199831360	G	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	184020100	rs71185698	C	CA	775.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	184020905	rs2272473	A	G	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr3	184037533	rs13319149	A	G	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	184039666	rs2178403	A	G	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:195,102:0.34:297
chr3	184040128	rs80195889	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr3	184043607	.	A	G	1714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=0.190;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:171,100:0.37:271
chr3	184045799	rs939317	A	G	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:92,62:0.40:154
chr3	184046355	rs1879244	C	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr3	184056101	rs1881973	G	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr3	184062776	rs9839000	A	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:62,35:0.36:97
chr3	184070675	rs3749223	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr3	184071017	rs41266265	G	A	4421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.971;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-0.707;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:208,122:0.37:330
chr3	184071017	.	GTT	ATC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=28;MQ=59.96;NF=50;NR=61;PP=2944;QD=20;SC=TTTAGGAAGCGTTTGTGGCTT;SbPval=0.68;Source=Platypus;TC=313;TCF=151;TCR=162;TR=111;WE=184071033;WS=184071007;set=Platypus	GT:AD:AF:DP	1/0:202,111:0.35:313
chr3	184071019	rs11920716	T	C	4421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.686;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=3.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-0.532;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:209,120:0.36:329
chr3	184071063	rs9820367	G	C	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:159,84:0.35:243
chr3	184072459	rs73189624	G	A	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=2.940;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:57,59:0.51:116
chr3	184075958	rs41266271	C	T	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:87,72:0.45:159
chr3	184090266	rs6141	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr3	184091149	rs6142	G	T	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr3	184094183	rs956732	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr3	184098193	rs1920128	A	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	184098647	rs885650	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr3	184099378	rs35929225	C	A	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:190,104:0.35:294
chr3	184100958	.	CG	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=6.351;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-0.578;QD=0.72;ReadPosRankSum=1.589;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr3	184100961	rs3833587	G	GT	584.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr3	184106025	.	GTCCA	G	171	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=53.67;NF=1;NR=2;PP=171;QD=58.6666666667;SC=CCATCCATCCGTCCATCCATC;SbPval=0.2;Source=Platypus;TC=14;TCF=1;TCR=13;TR=3;WE=184106036;WS=184106015;set=Platypus	GT:AD:AF:DP	0/1:11,3:0.21:14
chr3	184106217	rs1881972	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-1.477;QD=8.47;ReadPosRankSum=0.137;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	184106335	rs183905581	G	A	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:63,97:0.61:160
chr3	184157142	rs4371544	C	G	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,101:0.67:150
chr3	184428903	rs9872799	T	G	9082.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr3	184429133	rs10656187	A	ATCC	9963.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:7,229:0.97:236
chr3	184429414	rs10937187	C	A	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	184550501	rs9830734	A	G	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr3	184552422	.	C	CT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=2.639;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.056;QD=0.94;ReadPosRankSum=-1.227;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:145,31:0.18:176
chr3	184554271	rs56060538	G	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	184557317	rs75232593	T	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	184561140	rs11384502	G	GA	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	184573555	rs6443999	C	T	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	184580917	rs3733165	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	184588420	rs2305239	A	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	184631103	rs9821657	G	A	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	184631117	rs74747627	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.94;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	184642587	rs11391596	A	AT	936.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=12.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-0.568;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:14,58:0.81:72
chr3	184654166	rs6444004	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	184658058	.	TTA	T	21	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.4997;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=21;QD=14.0;SC=TAGTCTTTCATTATATATATA;SbPval=0.64;Source=Platypus;TC=10;TCF=4;TCR=6;TR=2;WE=184658067;WS=184658048;set=Platypus	GT:AD:AF:DP	0/1:8,2:0.20:10
chr3	184675359	rs4501092	T	C	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	184682214	rs6799328	T	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	184684313	rs4470487	G	A	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	184689649	rs4686918	GG	AA	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	184700356	rs4572747	A	C	4106.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.391;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.50;ReadPosRankSum=-0.632;SOR=0.521;set=HC	GT:AD:AF:DP	1/1:1,154:0.99:155
chr3	184714014	rs9860814	C	T	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	184717703	rs2291737	T	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	184766148	rs3821748	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	184766186	rs3821749	A	C	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	184766249	rs6779564	TC	CT	7282.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	184766301	rs3821750	T	C	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	184766392	rs3821751	G	A	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	184769911	rs2271257	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	184801094	rs61740263	G	A	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	184907503	.	CTT	C	75.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=-0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-0.000;QD=6.31;ReadPosRankSum=1.021;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	184935807	rs35531967	A	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	184971024	.	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.868;SOR=1.180;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr3	185046909	rs34308085	AT	A	1695.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr3	185046975	rs9863304	T	C	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	185146702	rs3732577	C	T	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	185155430	rs113427759	C	CT,CTT	791.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.961;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.39;MQRankSum=0.000;QD=19.31;ReadPosRankSum=0.616;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:4,20,17:0.49,0.41:41
chr3	185155482	rs2304815	A	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr3	185212593	rs6798873	T	C	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:48,85:0.64:133
chr3	185226492	rs55854644	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:67,35:0.34:102
chr3	185229464	rs61730237	T	C	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:54,91:0.63:145
chr3	185232169	rs1837882	G	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr3	185330303	rs73175548	C	T	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.360;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:35,33:0.49:68
chr3	185375342	.	C	T	904.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr3	185414543	.	G	GA	930.73	.	AC=1;AF=0.500;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,55:0.47:117
chr3	185431283	rs17826758	A	G	2153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=0.827;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:50,96:0.66:146
chr3	185635685	rs16860328	A	G	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	185655454	rs1862904	A	G	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	185774763	.	A	G	1505.77	.	AC=1;AF=0.500;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	0/1:109,74:0.40:183
chr3	185879296	rs13073156	T	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	185882643	rs4686741	C	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,34:0.33:103
chr3	185905876	rs13087397	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	185960192	rs6799929	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	185960414	rs12489063	G	A	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	185975470	rs34393958	CT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.380;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr3	185982955	rs3815620	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr3	185982972	rs3815619	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr3	185983273	.	CT	C	69	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=5;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=3;PP=69;QD=25.0;SC=ACCCCTATGACTTTTTCTAGG;SbPval=0.51;Source=Platypus;TC=18;TCF=3;TCR=15;TR=4;WE=185983281;WS=185983263;set=Platypus	GT:AD:AF:DP	1/0:14,4:0.22:18
chr3	185990096	rs2193587	C	T	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:80,126:0.61:206
chr3	186006566	rs710443	T	C	3686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.502;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:109,169:0.61:278
chr3	186006618	rs1004588	G	C	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	186287777	rs2889755	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	186287980	rs12330397	T	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	186288565	rs3806714	A	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	186288810	rs3733160	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.12;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	186290127	.	CATTT	C	339	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=2;HapScore=2;MGOF=22;MMLQ=28;MQ=60.0;NF=2;NR=5;PP=339;QD=50.0;SC=TTTCAGCTCACATTTATTTAT;SbPval=0.24;Source=Platypus;TC=15;TCF=2;TCR=13;TR=7;WE=186290138;WS=186290117;set=Platypus	GT:AD:AF:DP	1/1:8,7:0.47:15
chr3	186290143	rs374076917	TA	T	440.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.07;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	186290145	rs368298566	TTTA	T	440.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.07;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	186290155	rs2010555	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	186293588	rs2280391	A	G	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	186293819	rs56227532	T	C	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	186295417	rs60278421	AT	A	463.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.84;ReadPosRankSum=0.868;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr3	186299905	rs6784026	T	C	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	186300504	.	G	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.291;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr3	186300683	rs9851299	G	T	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	186301703	rs8147	A	G	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	186301840	rs13326516	T	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	186302391	.	A	ATTGTGTGTGTGTGTGTGTGTGTGT	1593.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=68.16;QD=38.87;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	186330745	rs112673334	G	GT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.798;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:144,31:0.18:175
chr3	186330969	rs4831	C	G	14074.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr3	186337713	rs4917	T	C	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	186338382	rs4918	G	C	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	186338425	rs1071592	A	C	8931.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr3	186358366	rs1047115	A	C	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:107,188:0.64:295
chr3	186370333	rs1131364	G	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr3	186386664	rs5855108	T	TA	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr3	186388028	rs2555515	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	186393073	.	GGTGT	G,GGT	547.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=2.079;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.07;ReadPosRankSum=-0.521;SOR=1.093;set=HC	GT:AD:AF:DP	1/2:5,10,11:0.38,0.42:26
chr3	186393093	rs34359202	T	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.450;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:34,5:0.13:39
chr3	186393095	rs2378122	T	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.691;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr3	186393097	rs7428891	T	A	527.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr3	186395180	rs7629680	T	C	28622.77	.	AC=2;AF=1.00;AN=2;DB;DP=1061;set=Intersection	GT:AD:AF:DP	1/1:0,1058:1.00:1058
chr3	186395436	rs1042445	C	T	5373.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:424,263:0.38:687
chr3	186395572	rs1042464	A	T	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:239,118:0.33:357
chr3	186440243	rs1469859	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:88,50:0.36:138
chr3	186442833	rs1656921	G	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr3	186443018	rs1656922	T	C	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=1.325;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:99,58:0.37:157
chr3	186459927	rs710446	T	C	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:257,170:0.40:427
chr3	186502677	.	A	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=1.191;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:176,33:0.16:209
chr3	186505706	rs12630327	A	C	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	186507757	rs1047148	G	A	8704.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr3	186522293	rs113205972	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=2.395;QD=1.08;ReadPosRankSum=1.902;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr3	186570892	rs2241766	T	G	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	186571196	rs2241767	A	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	186571814	rs3774262	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	186791795	rs9821439	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	186791817	rs2268526	A	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr3	186793242	rs2239612	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr3	186917751	rs6764714	C	G	4006.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:89,181:0.67:270
chr3	186947410	rs850318	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	186953808	rs850312	C	T	10994.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr3	186954285	rs710452	A	G	14733.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr3	186961478	rs710460	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	186969371	rs3214401	C	CG	433.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	186969634	rs698092	A	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	186980264	rs710468	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr3	187003495	rs698105	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	187086081	rs5855133	TCAGA	T	955.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr3	187088612	rs33927333	C	T	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:96,40:0.29:136
chr3	187088812	rs3821812	C	T	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:69,95:0.58:164
chr3	187088903	rs1533595	C	A	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:67,107:0.61:174
chr3	187088926	rs1533594	G	A	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:68,108:0.61:176
chr3	187089031	rs1003995	C	A	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-0.028;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:44,92:0.68:136
chr3	187416253	rs1523468	C	T	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	187416634	rs1973791	C	A	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr3	187416719	rs11707167	T	C	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	187419661	rs113681515	G	GCCTGCC	3820.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	187420445	rs4389470	C	T	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	187440506	rs1005099	C	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	187447032	rs1056932	G	A	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	187447926	rs1491997	C	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	187451609	rs1880101	A	G	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr3	187451701	rs1880100	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.67;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	187451709	rs1880099	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	187896912	rs13096262	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr3	187897059	rs13096615	G	A	3696.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:106,165:0.61:271
chr3	187897424	rs4577458	A	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr3	187898005	rs344953	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr3	188202550	rs2067078	A	T	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	188202582	rs1559814	G	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	188242669	rs200398269	TTCCTTCCTTCCGTCCG	T	2074.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.68;ReadPosRankSum=0.102;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr3	188242701	rs138209867	T	G	2091.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.84;ReadPosRankSum=1.214;SOR=0.470;set=HC	GT:AD:AF:DP	1/1:1,49:0.98:50
chr3	188242705	rs144299808	T	G	1908.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.49;ReadPosRankSum=1.621;SOR=0.434;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr3	188327461	rs1059380	C	T	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr3	188464248	rs3830584	G	GT	2552.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,82:0.52:159
chr3	188478197	rs3841956	G	GGTGTGT,GGTGTGTGTGTGTGT	500.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;QD=35.77;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:1,9,4:0.64,0.29:14
chr3	188478227	rs9844848	T	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.14;ReadPosRankSum=0.143;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	188478235	rs9844854	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	188590358	rs4687001	C	T	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	188590446	rs1136644	A	G	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	188933213	rs3821734	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr3	188937307	rs5855244	G	GAA	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.416;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr3	189028117	rs11425320	A	AT	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.748;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr3	189033221	rs16864215	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr3	189033292	rs6773831	C	G	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	189033377	rs62289687	A	G	3115.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:93,138:0.60:231
chr3	189038648	rs1055152	T	C	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	189507518	rs34201045	C	CAGAG	1368.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr3	189590824	rs9840359	GG	CA	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;JOINED;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr3	189604149	rs1554131	T	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:163,77:0.32:240
chr3	189604160	rs1345186	T	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:171,86:0.33:257
chr3	189607287	rs150685395	A	C	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:277,187:0.40:464
chr3	189625218	rs1515488	G	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:101,70:0.41:171
chr3	189688569	rs3732920	C	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	189689904	rs710543	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	189690816	rs71674435	G	GA	893	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.574;MLEAC=2;MLEAF=1.000;MQ=60.51;MQRankSum=0.706;QD=16.24;ReadPosRankSum=-0.455;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:7,48:0.87:55
chr3	189690861	rs710545	T	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	189691499	rs1815171	G	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	189692565	rs1985690	G	A	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	189702200	rs710558	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	189702395	rs11311050	TA	T	1202.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr3	189705268	rs11354217	TA	T	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.047;QD=2.49;ReadPosRankSum=-1.552;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:43,26:0.38:69
chr3	189705542	rs3114672	A	G	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	189712089	rs1719599	G	A	2600.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.84;QD=42.64;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	189712089	.	GG	AA	2006	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=25;MQ=60.83;NF=17;NR=26;PP=2006;QD=47.894601741;SC=TGAAACAGACGGGAAAAAACA;SbPval=0.68;Source=Platypus;TC=49;TCF=21;TCR=28;TR=43;WE=189712102;WS=189712079;set=Platypus	GT:AD:AF:DP	1/1:6,43:0.88:49
chr3	189712090	rs1719598	G	A	2600.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.91;QD=45.63;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	189712094	rs139834656	A	AAAAC	1499.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.658;MLEAC=2;MLEAF=1.000;MQ=60.96;MQRankSum=0.467;QD=39.47;ReadPosRankSum=0.594;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr3	189713205	rs9821880	T	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	189713345	rs10645374	G	GT	162.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.787;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:3,11:0.79:14
chr3	189837993	rs710596	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,9:0.21:43
chr3	189838018	rs35346557	G	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr3	190026383	rs12629166	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	190030680	rs9869263	A	G	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:65,113:0.63:178
chr3	190040008	rs17429833	C	G	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	190157898	rs6767754	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr3	190158168	rs35161724	G	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr3	190167533	rs10513852	C	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:101,116:0.53:217
chr3	190282197	rs6764468	G	A	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	190333162	rs35429399	TG	T	607.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr3	190338039	rs11368884	C	CT	405.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr3	190338270	rs115290893	A	G	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:68,120:0.64:188
chr3	190341241	rs4687160	C	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:81,67:0.45:148
chr3	190341292	rs4687161	C	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr3	190345098	rs34908328	GT	G	1470.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.878;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.303;QD=20.71;ReadPosRankSum=0.974;SOR=0.209;set=HC	GT:AD:AF:DP	1/1:2,69:0.97:71
chr3	190347391	rs7611887	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	190578566	rs13075089	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr3	190580209	.	AAG	A	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.214;QD=2.54;ReadPosRankSum=-0.691;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr3	190594309	rs9880320	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr3	190594334	rs9842242	A	G	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=55.40;MQRankSum=-1.454;QD=4.62;ReadPosRankSum=0.850;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr3	190594452	rs9842514	A	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr3	190936482	rs9290979	A	C	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr3	190967718	rs34754526	TA	T	62.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr3	190992954	.	A	G	1630.77	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr3	190995847	rs3214008	T	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	190999790	rs6444533	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	190999872	rs6444534	G	A	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	190999917	rs6788319	C	A	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	190999990	rs6444535	C	T	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	191047532	rs9847278	A	G	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	191074873	rs188384	C	G	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	191075012	rs1520203	G	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	191075656	rs13434281	G	A	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	191075902	rs11542549	C	T	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	191087546	rs4677632	A	G	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=2.155;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	191087551	rs697905	G	A	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=2.026;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	191093053	rs2028572	T	C	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	191093175	rs2028574	T	A	5962.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	191093310	rs4677728	A	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	191093384	rs4677729	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	191093434	rs293806	A	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	191093475	rs4677730	T	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	191097908	rs293812	C	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=27.70;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	191097928	rs34031057	G	GT	437.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.471;QD=16.22;ReadPosRankSum=1.853;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr3	191097966	rs293813	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=25.38;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	191098121	rs293814	C	T	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	191098731	rs211043	G	A	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	191100448	rs383529	G	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	191100561	rs364519	C	A	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	191178925	rs539897	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr3	191179193	rs293833	A	G	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	191179303	rs176823	C	T	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	191888452	rs201475598	GAA	G,GA	2424.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.386;QD=17.70;ReadPosRankSum=-0.900;SOR=0.743;set=HC	GT:AD:AF:DP	1/2:14,76,47:0.55,0.34:137
chr3	192635348	rs9819230	C	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.51;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	192993762	rs13084990	C	A	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	192994543	rs2271791	A	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	193007560	rs12152269	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	193016895	rs1878716	T	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	193017204	rs6805083	C	T	260.84	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr3	193023255	rs10937578	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	193023585	rs5855481	TA	T	592.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr3	193024928	rs10804952	C	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	193031875	rs78188075	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr3	193031926	rs2280268	C	T	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	193036794	rs6788770	G	C	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	193042776	rs11926955	T	C	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	193044923	rs1387700	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	193062906	rs6444706	G	A	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	193068800	rs1038719	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr3	193069125	rs55658952	G	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr3	193071888	rs11300573	CA	C	754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-2.181;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:87,55:0.39:142
chr3	193080344	rs12636830	C	T	4952.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:102,220:0.68:322
chr3	193080414	rs6797429	C	G	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:112,63:0.36:175
chr3	193081122	rs12637558	G	T	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,76:0.56:135
chr3	193081206	rs2367605	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr3	193081830	rs923496	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	193081866	rs4386441	T	A	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	193090101	rs57458521	A	AGG	1185.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.16;QD=40.89;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	193090255	rs2171848	C	T	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	193090260	rs6444712	T	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=1.571;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	193096529	rs4687419	C	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	193153562	rs1996735	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr3	193272442	rs58073069	CGTGTGT	C,CGT	619.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.54;QD=34.43;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,10,8:0.56,0.44:18
chr3	193332420	rs145894722	C	CTGTG	1479.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	193334991	rs7624750	G	A	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	193336639	rs3772393	T	C	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	193355074	rs166850	T	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	193355102	rs10451941	T	C	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	193361917	rs77303706	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr3	193363267	rs77539393	T	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.43;ReadPosRankSum=1.316;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	193365974	rs9831900	T	G	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	193374964	rs9851685	T	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	193383973	rs10804957	A	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	193384203	rs10937595	T	A	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	193386239	rs12494482	C	T	14002.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:2,512:1.00:514
chr3	193854148	rs35578304	T	TAAA	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=1.044;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr3	194061826	rs11711157	C	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	194061906	rs4974538	T	C	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	194062519	rs3732477	C	T	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr3	194062565	rs3732476	C	T	7520.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr3	194063300	rs62288099	T	C	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	194081692	rs13090956	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:156,77:0.33:233
chr3	194083963	rs193169898	C	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr3	194084153	rs11925692	T	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:73,36:0.33:109
chr3	194118874	rs1223989	T	C	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	194133121	rs9855721	G	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr3	194147859	rs199767870	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:126,60:0.32:186
chr3	194149700	rs13064289	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	194168500	rs9861816	G	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr3	194168811	.	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.608;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr3	194176712	rs4974520	C	A	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.540;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:35,34:0.49:69
chr3	194180743	rs4974521	G	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr3	194219732	rs2002762	G	A	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-1.448;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr3	194313632	rs7373172	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr3	194313832	rs1773184	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	194324939	rs6768028	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr3	194324982	rs745171	C	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr3	194325010	rs745168	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr3	194325325	rs708632	C	T	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	194337708	rs10933663	T	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.64;ReadPosRankSum=-0.060;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	194337901	rs922282	T	C	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	194338423	rs12695036	C	T	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr3	194344453	rs371160489	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:121,75:0.38:196
chr3	194346544	rs1773191	T	A	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	194346553	rs1773190	T	C	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	194346803	rs1773189	A	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	194346822	rs1572979	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	194349027	rs1318216	A	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	194349178	rs1563970	C	T	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	194353772	rs11273892	C	CCCGCCCGACAG	1310.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	194362721	rs1060827	G	A	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	194369352	rs58416334	T	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr3	194373832	rs1675953	TG	CA	7152.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;JOINED;set=Intersection	GT:AD:AF:DP	0/1:79,178:0.69:257
chr3	194379567	rs1675948	A	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr3	194379596	rs1705971	C	A	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr3	194379646	rs11438897	T	TC	3447.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:82,121:0.60:203
chr3	194379905	rs11357453	TA	T	450.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr3	194381530	rs1705969	A	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.81;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	194381680	rs1675947	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr3	194381716	rs1705968	G	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	194381742	rs1705967	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	194386136	rs1705966	C	T	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr3	194386771	rs73890198	C	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	194386881	rs1675944	A	G	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	194387186	rs35670721	C	T	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:244,116:0.32:360
chr3	194387253	rs34423045	A	G	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.089;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:170,63:0.27:233
chr3	194390617	rs1773230	G	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr3	194390713	rs1675926	C	A	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr3	194390869	rs36028600	G	GA	1867.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:33,86:0.72:119
chr3	194392683	rs1773231	A	C	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	194408704	rs4677673	A	G	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	194408821	rs79296405	G	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr3	194968671	rs146611852	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr3	194991220	rs7640099	AA	GC	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	194999996	rs7610022	T	A	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	195015307	rs71637158	CA	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.340;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	195028183	rs13059843	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	195029738	rs10636354	G	GAAAGT	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;MQ=60.63;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	195076877	rs6437374	C	G	7871.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	195245771	rs17847363	C	T	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,39:0.39:101
chr3	195245805	rs17847362	G	A	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=27.52;SOR=1.171;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	195295661	rs7659	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	195295702	.	T	TGGCG	671	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=10;HapScore=4;MGOF=15;MMLQ=24;MQ=59.59;NF=27;NR=1;PP=671;QD=24.3928571429;SC=TTTGTCTTTATGGGGGGGGGG;SbPval=0.6;Source=Platypus;TC=30;TCF=29;TCR=1;TR=28;WE=195295716;WS=195295692;set=Platypus	GT:AD:AF:DP	1/0:2,28:0.93:30
chr3	195295704	.	G	GC	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.203;QD=23.23;ReadPosRankSum=1.051;SOR=0.186;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr3	195295708	.	GG	TG	683	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=9;HapScore=4;MGOF=15;MMLQ=23;MQ=59.71;NF=25,24;NR=1,5;PP=683,648;QD=26.7307692308;SC=TTTATGGGGGGGGGGTAGGGG;SbPval=0.99;Source=Platypus;TC=47;TCF=38;TCR=9;TR=26,29;WE=195295716;WS=195295692;set=Platypus	GT:AD:AF:DP	0/1:30,29:0.49:59
chr3	195295708	rs142189206	GG	GGGGGTG,GGGTG	1451.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	2/1:0.59,0.41:34
chr3	195300676	rs1568566	A	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr3	195306055	rs4677691	A	G	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	195345828	rs148520845	AG	GA	11946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.544;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.17;MQRankSum=-10.780;QD=23.94;ReadPosRankSum=1.619;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:201,298:0.60:499
chr3	195345953	rs145174488	C	T	8130.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:169,378:0.69:547
chr3	195346468	rs145279797	T	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=16.566;MLEAC=1;MLEAF=0.500;MQ=52.44;MQRankSum=-6.249;QD=4.05;ReadPosRankSum=-0.183;SOR=3.067;set=HC	GT:AD:AF:DP	0/1:83,23:0.22:106
chr3	195346533	.	A	G	6169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.176;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=58.111;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=-13.646;QD=19.84;ReadPosRankSum=-4.347;SOR=2.666;set=HC	GT:AD:AF:DP	0/1:162,149:0.48:311
chr3	195346535	.	CA	AG	6360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=38.274;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.86;MQRankSum=-13.514;QD=19.63;ReadPosRankSum=-4.268;SOR=2.028;set=HC	GT:AD:AF:DP	0/1:165,159:0.49:324
chr3	195346861	rs116014205	T	C	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:184,129:0.41:313
chr3	195346900	rs114465812	T	C	2162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.144;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=55.601;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-11.402;QD=6.04;ReadPosRankSum=-4.653;SOR=2.305;set=HC	GT:AD:AF:DP	0/1:287,71:0.20:358
chr3	195346906	rs62286967	C	T	2314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.088;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=60.768;MLEAC=1;MLEAF=0.500;MQ=54.76;MQRankSum=-10.637;QD=6.26;ReadPosRankSum=-3.605;SOR=2.270;set=HC	GT:AD:AF:DP	0/1:288,82:0.22:370
chr3	195346945	rs116044101	C	A	4862.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:241,224:0.48:465
chr3	195377629	rs138964810	C	T	6060.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:161,168:0.51:329
chr3	195377651	rs139047772	T	C	5770.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:137,156:0.53:293
chr3	195395379	rs73216381	T	G	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:70,114:0.62:184
chr3	195395533	rs9847770	C	T	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:131,131:0.50:262
chr3	195395549	rs58717446	C	CAT	4067.73	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:109,108:0.50:217
chr3	195412876	rs11185503	T	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;MQ=51.69;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr3	195415423	rs150892404	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr3	195426490	rs3107775	A	G	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:73,122:0.63:195
chr3	195447795	rs147994480	CCCT	C	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	195451880	rs142096782	AG	GA	8924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.610;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=8.179;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.09;MQRankSum=-8.347;QD=20.47;ReadPosRankSum=2.053;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:208,228:0.52:436
chr3	195452005	rs145612981	C	T	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	195452805	rs138659995	T	C	5546.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:74,235:0.76:309
chr3	195452960	rs4093817	G	A	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.341;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=53.626;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-16.114;QD=1.82;ReadPosRankSum=-2.399;SOR=3.169;set=HC	GT:AD:AF:DP	0/1:271,50:0.16:321
chr3	195452980	.	T	C	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.924;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=61.430;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-18.600;QD=1.20;ReadPosRankSum=-5.608;SOR=4.244;set=HC	GT:AD:AF:DP	0/1:312,36:0.10:348
chr3	195452987	rs9866681	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.909;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=62.712;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-18.508;QD=0.68;ReadPosRankSum=-6.320;SOR=5.240;set=HC	GT:AD:AF:DP	0/1:315,29:0.08:344
chr3	195452991	rs3828411	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.323;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=62.153;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-18.462;QD=0.39;ReadPosRankSum=-5.971;SOR=6.271;set=HC	GT:AD:AF:DP	0/1:319,23:0.07:342
chr3	195453243	rs3828408	C	T	5735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.435;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=22.824;MLEAC=1;MLEAF=0.500;MQ=55.55;MQRankSum=-5.649;QD=11.73;ReadPosRankSum=-3.548;SOR=1.944;set=HC	GT:AD:AF:DP	0/1:331,158:0.32:489
chr3	195453249	rs3828407	T	C	5866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.119;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=14.934;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-4.717;QD=11.59;ReadPosRankSum=-3.216;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:334,172:0.34:506
chr3	195453310	rs9758494	G	A	6580.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:261,309:0.54:570
chr3	195453329	.	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.514;ClippingRankSum=0.000;DP=587;ExcessHet=3.0103;FS=22.722;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-12.854;QD=0.87;ReadPosRankSum=-3.744;SOR=2.950;set=HC	GT:AD:AF:DP	0/1:528,56:0.10:584
chr3	195453332	.	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.420;ClippingRankSum=0.000;DP=579;ExcessHet=3.0103;FS=28.647;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-13.304;QD=0.65;ReadPosRankSum=-2.254;SOR=3.862;set=HC	GT:AD:AF:DP	0/1:533,45:0.08:578
chr3	195453434	rs113099255	G	A	4849.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:93,218:0.70:311
chr3	195456478	rs111854338	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr3	195466662	rs3844569	T	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-1.268;SOR=2.075;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr3	195467837	rs56381108	A	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr3	195467853	rs56050330	C	T	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.02;ReadPosRankSum=-1.177;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr3	195475799	rs3205933	C	T	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr3	195476084	rs55798120	CA	TG	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	195477713	rs2291654	G	A	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-0.812;QD=25.00;ReadPosRankSum=0.014;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:17,30:0.64:47
chr3	195477713	.	GCC	ACA	1158	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=9;HapScore=1;MGOF=9;MMLQ=28;MQ=54.28;NF=25;NR=1;PP=1158;QD=46.5949182639;SC=CTGTTTGCCCGCCCCCCGCAG;SbPval=0.95;Source=Platypus;TC=43;TCF=38;TCR=5;TR=26;WE=195477723;WS=195477703;set=Platypus	GT:AD:AF:DP	1/0:17,26:0.60:43
chr3	195477715	rs2291653	C	A	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-0.920;QD=24.47;ReadPosRankSum=0.473;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr3	195477786	rs6808605	C	T	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-0.124;QD=15.67;ReadPosRankSum=-0.803;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:37,86:0.70:123
chr3	195478012	rs2291651	G	C	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-0.019;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:39,69:0.64:108
chr3	195479226	rs6792437	G	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:35,56:0.62:91
chr3	195479256	rs2258447	T	C	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	195484244	rs2550270	G	A	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr3	195492027	rs11926236	T	C	5507.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	195496129	rs2688492	C	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr3	195497143	rs2293232	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,51:0.40:129
chr3	195497174	rs2259102	C	G	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:63,76:0.55:139
chr3	195497809	rs2259153	T	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr3	195501149	rs2259292	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr3	195501258	rs2259331	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	195505417	rs2259419	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr3	195505664	rs2688513	G	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr3	195505788	rs2550253	G	C	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=5.631;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-0.931;QD=12.01;ReadPosRankSum=-0.056;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:42,38:0.47:80
chr3	195505835	rs58500707	C	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.74;MQRankSum=-1.310;QD=11.57;ReadPosRankSum=-1.320;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr3	195505838	rs59101491	G	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.10;MQRankSum=-1.373;QD=10.97;ReadPosRankSum=-2.065;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr3	195512181	rs202182738	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.590;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-1.857;QD=14.37;ReadPosRankSum=1.169;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	195512186	rs202060675	T	C	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.41;QD=35.26;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	195512195	rs71617308	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.245;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-1.697;QD=17.06;ReadPosRankSum=-1.374;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	195512206	rs201070566	A	G	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.469;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-1.486;QD=14.16;ReadPosRankSum=-0.029;SOR=1.363;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	195515483	.	T	C	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.381;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=7.753;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-0.280;QD=4.89;ReadPosRankSum=-1.197;SOR=1.761;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr3	195515499	rs201892104	C	T	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.101;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.934;QD=3.82;ReadPosRankSum=-4.209;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr3	195515508	rs200091457	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.880;QD=2.09;ReadPosRankSum=-5.393;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr3	195515510	rs147508192	A	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.696;QD=1.61;ReadPosRankSum=-5.194;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:71,16:0.18:87
chr3	195515518	.	G	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.586;QD=0.64;ReadPosRankSum=-4.807;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:71,11:0.13:82
chr3	195515568	rs62282504	C	T	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr3	195515594	rs13095016	C	G	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr3	195515617	rs2641776	G	C	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	195516630	rs3103954	G	T	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:87,114:0.57:201
chr3	195516878	rs2177336	T	C	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:75,96:0.56:171
chr3	195517258	rs1106502	G	A	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:59,109:0.65:168
chr3	195517321	rs1104760	G	A	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:62,104:0.63:166
chr3	195517553	rs882605	A	C	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:80,103:0.56:183
chr3	195517617	rs79229103	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:70,54:0.44:124
chr3	195517909	rs729593	G	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:105,74:0.41:179
chr3	195518112	rs142781032	T	TGTCTCCTGCGTAACA	2343.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr3	195518330	rs3107764	C	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr3	195538501	rs143120396	TTC	T	808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=7.070;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.238;QD=2.84;ReadPosRankSum=1.191;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:234,51:0.18:285
chr3	195594151	rs10579442	CCT	C	5208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.659;QD=8.90;ReadPosRankSum=-1.116;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:426,159:0.27:585
chr3	195595632	rs13087251	A	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr3	195595657	rs34049168	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr3	195595701	rs78292793	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr3	195596501	rs71637188	T	TAG	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr3	195596636	rs13084875	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	195596907	rs2278034	T	C	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,89:0.48:186
chr3	195597288	rs2278033	T	C	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:47,77:0.62:124
chr3	195599085	rs2241413	T	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr3	195612034	rs3747672	T	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr3	195615376	rs3747669	A	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr3	195690308	rs201030422	G	A	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:168,87:0.34:255
chr3	195779155	rs41298097	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	195782176	rs419068	CA	TG	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	195782184	rs419059	C	T	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	195784997	rs3933	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	195789376	rs526860	C	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	195789428	rs507131	C	A	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	195798258	rs480760	T	C	11900.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr3	195801917	rs56119775	C	CA	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=8.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.657;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr3	195804021	rs41300435	G	A	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	195926234	rs939892	T	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr3	195936382	rs11719281	G	A	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	196022750	rs2293160	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr3	196023007	rs73212151	C	T	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:108,125:0.54:233
chr3	196042137	rs34104361	CT	C	789.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.56;ReadPosRankSum=1.113;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr3	196042141	rs200428703	T	C	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.82;ReadPosRankSum=1.183;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr3	196043218	rs61388787	A	AT	1419.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:36,68:0.65:104
chr3	196044894	rs2270769	G	C	2432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.673;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:62,111:0.64:173
chr3	196051087	rs147354585	GTC	G	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.686;QD=1.38;ReadPosRankSum=-0.519;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:271,41:0.13:312
chr3	196054004	rs2276711	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr3	196054439	rs6785339	T	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr3	196054488	rs6782336	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr3	196118674	rs149482481	A	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:131,70:0.35:201
chr3	196134294	.	TA	T	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=9.174;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.571;QD=2.41;ReadPosRankSum=-1.059;SOR=1.869;set=HC	GT:AD:AF:DP	0/1:35,18:0.34:53
chr3	196199204	rs3796129	G	T	8203.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr3	196210590	rs7643192	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	196210808	rs7646174	T	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	196210875	rs77317203	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	196210894	rs7646273	T	C	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	196215352	rs34023868	C	CA	121.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=13.54;ReadPosRankSum=0.035;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,7:0.78:9
chr3	196215451	rs62798260	CA	C	888.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr3	196215660	rs11185543	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	196236244	rs6803596	T	C	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr3	196281208	rs9311	T	C	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:116,193:0.62:309
chr3	196294104	rs9842616	C	G	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	196386964	rs1798631	C	G	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:155,88:0.36:243
chr3	196388099	rs62623661	G	C	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:217,133:0.38:350
chr3	196434364	rs67479689	AGTCTG	A	782.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr3	196435331	rs55901490	CAG	C	2769.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:51,73:0.59:124
chr3	196435534	rs6776064	T	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:74,91:0.55:165
chr3	196438744	rs7629566	A	G	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:86,164:0.66:250
chr3	196438826	rs7639719	G	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:49,80:0.62:129
chr3	196443803	rs1906044	T	C	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=1.608;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:27,40:0.60:67
chr3	196443826	rs1906045	A	G	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-0.034;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:22,34:0.61:56
chr3	196448103	rs9864896	C	T	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr3	196453427	rs1976847	C	A	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:47,75:0.61:122
chr3	196453467	rs1568603	A	C	2833.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:80,123:0.61:203
chr3	196453654	rs12637375	C	A	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr3	196541580	rs11185455	G	A	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	196627088	rs9825635	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	196627335	rs6764463	T	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.069;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr3	196627361	rs6772870	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	196650187	rs62411765	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.767;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr3	196656772	rs1602	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	196657670	rs63736860	CT	C	1730.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr3	196666059	rs553783	A	G	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	196669488	rs3214858	C	CA	3093.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	196669912	rs335824	C	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr3	196674749	rs4916589	C	T	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	196674879	rs12636891	A	G	7411.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	196674916	rs1147240	A	C	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:94,167:0.64:261
chr3	196674972	rs574365	CT	TC	7486.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr3	196743130	rs6779362	T	C	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:91,70:0.43:161
chr3	196749798	rs2288766	T	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	196750016	rs2288765	A	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	196750841	rs2280294	C	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,50:0.58:86
chr3	196750847	rs113733046	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr3	196751474	rs2280296	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	196754819	rs2276788	C	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr3	196754856	rs12637442	C	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr3	196771513	rs34492126	G	A	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:247,115:0.32:362
chr3	196771554	rs35370245	T	C	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:230,111:0.33:341
chr3	196793475	rs41284053	A	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr3	196795720	rs6804448	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr3	196795879	rs57032552	A	ACT	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr3	196803647	rs12632559	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr3	196812291	rs76509927	T	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr3	196817735	rs77261739	A	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr3	196865301	rs115934144	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.573;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr3	196869688	rs7628652	A	G	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	196869820	rs9866550	T	A	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr3	197020630	rs364644	G	A	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	197020718	rs434681	T	C	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=26.36;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	197020780	rs3836429	G	GA	1664.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=25.61;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	197020871	rs450891	G	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	197249693	rs3828369	C	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:105,54:0.34:159
chr3	197361944	rs11918438	G	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr3	197362103	rs28434055	G	T	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:102,122:0.54:224
chr3	197362179	rs11915811	T	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr3	197401177	.	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.419;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	197482760	rs13068986	C	G	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=0.369;QD=10.86;ReadPosRankSum=1.254;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:43,49:0.53:92
chr3	197483279	rs6794391	A	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:39,65:0.62:104
chr3	197495334	rs3205525	G	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=1.085;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:31,39:0.56:70
chr3	197496984	rs1708460	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	197500394	rs3830497	T	TTTTG	2900.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:50,74:0.60:124
chr3	197544200	rs55896070	C	CGTGTGTGTGTGT	241.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.695;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr3	197544201	.	A	G	68	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=32;MMLQ=24;MQ=59.02;NF=0;NR=5;PP=68;QD=20.5542425094;SC=ATTGTCCAACATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=18;TCF=3;TCR=15;TR=5;WE=197544209;WS=197544191;set=Platypus	GT:AD:AF:DP	0/1:13,5:0.28:18
chr3	197544201	.	A	ATTTTGTGTGTGTGTGCG	241.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.354;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	197557635	rs501101	C	T	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:60,109:0.64:169
chr3	197566254	rs17850206	T	C	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr3	197574936	rs2306439	G	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr3	197581147	rs9863587	A	G	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	53360	rs75858144	C	G	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=1373;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.327;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:1139,230:0.17:1369
chr4	53428	rs2859214	G	A	18368.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:2,657:1.00:659
chr4	59350	rs6834707	A	G	2052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=1668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.878;QD=1.24;ReadPosRankSum=0.889;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:1390,267:0.16:1657
chr4	59469	rs6834940	A	G	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=1590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.816;QD=1.07;ReadPosRankSum=-1.501;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:1342,236:0.15:1578
chr4	60210	rs3908749	G	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.634;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.134;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:195,37:0.16:232
chr4	60294	.	T	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=7.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.024;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:263,49:0.16:312
chr4	60303	rs3864127	G	A	2044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=8.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=0.120;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:245,79:0.24:324
chr4	60335	rs2780400	A	T	5040.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:121,192:0.61:313
chr4	60345	rs4248885	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=4.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-2.587;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:242,46:0.16:288
chr4	60371	rs61792209	G	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.509;QD=2.43;ReadPosRankSum=2.135;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:185,50:0.21:235
chr4	60400	rs3864128	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:107,51:0.32:158
chr4	60448	rs2780399	G	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.568;QD=4.38;ReadPosRankSum=0.124;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:56,20:0.26:76
chr4	60503	rs4021995	AT	A	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.381;QD=3.11;ReadPosRankSum=-1.431;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr4	67783	.	CTT	C	755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.514;QD=3.40;ReadPosRankSum=-1.065;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:175,47:0.21:222
chr4	67846	rs7437270	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.693;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.355;QD=0.65;ReadPosRankSum=-1.289;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:88,13:0.13:101
chr4	67857	rs6599364	C	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr4	85995	rs61336127	C	CA	15859.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr4	86016	rs57253237	G	GC	16504.73	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr4	86022	rs74490941	C	A	15631.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.56;QD=47.95;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr4	86022	.	CAG	ATA	2937	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=2;HapScore=1;MGOF=35;MMLQ=28;MQ=47.39;NF=54;NR=53;PP=2937;QD=20;SC=CAAAGCTTTACAGGGTCCACA;SbPval=0.17;Source=Platypus;TC=179;TCF=107;TCR=72;TR=107;WE=86052;WS=86006;set=Platypus	GT:AD:AF:DP	1/1:72,107:0.60:179
chr4	86023	rs78362263	A	T	15451.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.59;QD=47.11;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr4	86024	rs77715101	G	A	15361.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.55;QD=47.56;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr4	86031	rs367720730	CA	C	15757.73	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.61;QD=48.04;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr4	86032	.	AAT	A	2973	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=1;HapScore=1;MGOF=35;MMLQ=28;MQ=46.39;NF=36;NR=53;PP=2973;QD=20;SC=CAGGGTCCACAATCCACTGAA;SbPval=0.53;Source=Platypus;TC=89;TCF=36;TCR=53;TR=89;WE=86052;WS=86006;set=Platypus	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	86034	rs57594632	TC	T	15577.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.75;QD=45.95;SOR=1.327;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr4	86040	rs17853557	G	T	15949.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.69;QD=48.19;SOR=1.463;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr4	86042	rs17857099	A	G	15970.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.79;QD=47.53;SOR=1.540;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr4	86044	rs17857100	G	A	15565.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.95;QD=44.73;SOR=1.502;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr4	86101	rs58319295	G	GC	21749.73	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr4	86738	rs2353625	A	G	15831.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:1,572:1.00:573
chr4	86798	rs3789149	C	T	6546.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:304,300:0.50:604
chr4	87113	rs2006748	T	C	7208.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:300,321:0.52:621
chr4	87277	rs2006764	G	C	21876.77	.	AC=2;AF=1.00;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	1/1:0,794:1.00:794
chr4	87313	rs60154095	G	GA	29566.73	.	AC=2;AF=1.00;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	1/1:0,794:1.00:794
chr4	124375	rs3747693	T	G	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:104,97:0.48:201
chr4	135694	rs12504142	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	135738	rs57013142	T	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr4	155713	rs7440274	A	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:122,89:0.42:211
chr4	263968	.	C	CTATGTACATAAAGGTTTCCGGACTGTCTAAAGGCTTTGCCACATTCTTCACATGTGTAGGGTTT	1337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=11.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.67;ReadPosRankSum=-2.312;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr4	264941	rs11731285	A	G	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:120,120:0.50:240
chr4	299261	rs79657896	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr4	331658	rs3749520	T	C	5224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.891;QD=14.64;ReadPosRankSum=-1.364;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:216,141:0.39:357
chr4	331666	rs3749521	G	C	5396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.879;QD=14.24;ReadPosRankSum=-1.352;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:227,152:0.40:379
chr4	331693	rs5855672	G	GC	16203.73	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr4	331740	rs3749523	G	T	4149.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:272,204:0.43:476
chr4	338031	.	A	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=5.743;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-9.297;QD=1.58;ReadPosRankSum=-1.288;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:79,9:0.10:88
chr4	338036	.	A	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-9.765;QD=2.61;ReadPosRankSum=-1.366;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:86,11:0.11:97
chr4	338047	.	G	A	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-10.549;QD=1.79;ReadPosRankSum=-0.473;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:100,13:0.12:113
chr4	338054	.	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=4.279;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-11.103;QD=1.81;ReadPosRankSum=0.059;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:111,14:0.11:125
chr4	338078	.	A	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=5.326;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-12.418;QD=1.67;ReadPosRankSum=1.846;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:139,17:0.11:156
chr4	338086	.	T	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=3.735;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-12.776;QD=1.45;ReadPosRankSum=2.611;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:148,17:0.10:165
chr4	338100	.	ATT	A	812.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-11.295;QD=3.71;ReadPosRankSum=-0.681;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:187,32:0.15:219
chr4	338112	.	AA	TT	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.880;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=8.093;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-10.811;QD=4.10;ReadPosRankSum=-2.025;SOR=1.365;set=HC	GT:AD:AF:DP	0/1:205,40:0.16:245
chr4	338129	rs75245145	G	A	2266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=5.192;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-8.541;QD=6.75;ReadPosRankSum=-4.766;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:253,83:0.25:336
chr4	338156	rs79227679	T	A	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-8.678;QD=5.23;ReadPosRankSum=-2.788;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:294,134:0.31:428
chr4	338186	rs78725891	G	T	2788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.448;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-8.122;QD=5.54;ReadPosRankSum=1.422;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:333,170:0.34:503
chr4	338197	.	T	TGA	6330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.609;ClippingRankSum=0.000;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-7.478;QD=12.54;ReadPosRankSum=2.612;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:331,174:0.34:505
chr4	338200	.	G	C	6416.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.064;ClippingRankSum=0.000;DP=537;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-7.504;QD=12.56;ReadPosRankSum=3.269;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:333,178:0.35:511
chr4	338201	.	ATC	A	6466.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.875;ClippingRankSum=0.000;DP=541;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-7.550;QD=12.56;ReadPosRankSum=3.514;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:337,178:0.35:515
chr4	338205	rs80052234	T	C	6490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-7.630;QD=12.51;ReadPosRankSum=3.259;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:338,181:0.35:519
chr4	338246	rs79348421	G	A	6126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.047;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-6.921;QD=13.65;ReadPosRankSum=-0.654;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:273,176:0.39:449
chr4	338252	rs76962477	G	A	5358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.679;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-6.845;QD=12.82;ReadPosRankSum=-0.296;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:263,155:0.37:418
chr4	338258	rs80241916	G	A	5245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-6.525;QD=13.31;ReadPosRankSum=0.213;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:255,139:0.35:394
chr4	338260	rs76915575	A	G	5028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-6.401;QD=12.96;ReadPosRankSum=0.133;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:252,136:0.35:388
chr4	338266	rs74323716	G	A	4491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-6.297;QD=12.76;ReadPosRankSum=0.391;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:234,118:0.34:352
chr4	338289	rs77578216	A	C	2180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.324;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=5.514;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-5.702;QD=9.36;ReadPosRankSum=-2.902;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:164,69:0.30:233
chr4	338296	rs77544910	G	T	2093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=7.708;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-5.528;QD=10.07;ReadPosRankSum=-3.315;SOR=1.330;set=HC	GT:AD:AF:DP	0/1:151,57:0.27:208
chr4	338301	.	G	GA	1799.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.453;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=8.498;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-5.394;QD=9.94;ReadPosRankSum=-4.282;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:133,48:0.27:181
chr4	338302	.	G	GA	1733.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.728;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=34.712;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-5.082;QD=10.26;ReadPosRankSum=-2.786;SOR=3.633;set=HC	GT:AD:AF:DP	0/1:132,37:0.22:169
chr4	338305	.	CCGGG	C	1115.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.422;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=32.454;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.207;QD=6.72;ReadPosRankSum=-2.998;SOR=3.543;set=HC	GT:AD:AF:DP	0/1:131,35:0.21:166
chr4	338310	.	T	TGA	1052.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.192;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=27.874;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-4.929;QD=6.93;ReadPosRankSum=-3.434;SOR=3.377;set=HC	GT:AD:AF:DP	0/1:117,35:0.23:152
chr4	338313	.	A	ACC	1040.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=20.604;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-5.152;QD=7.23;ReadPosRankSum=-3.896;SOR=3.003;set=HC	GT:AD:AF:DP	0/1:113,31:0.22:144
chr4	338322	rs78396627	T	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=13.927;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-4.136;QD=4.49;ReadPosRankSum=-3.893;SOR=2.724;set=HC	GT:AD:AF:DP	0/1:100,19:0.16:119
chr4	343795	rs3037605	C	CTGCT	3439.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:81,87:0.52:168
chr4	367142	.	A	G	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.545;ClippingRankSum=0.000;DP=973;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-19.406;QD=0.40;ReadPosRankSum=-9.791;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:896,69:0.07:965
chr4	367199	rs114931928	A	T	2525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=1092;ExcessHet=3.0103;FS=5.735;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-18.714;QD=2.33;ReadPosRankSum=5.799;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:953,131:0.12:1084
chr4	367201	rs111394409	C	A	2528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=1084;ExcessHet=3.0103;FS=5.694;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-18.637;QD=2.35;ReadPosRankSum=6.096;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:945,131:0.12:1076
chr4	367206	rs113884485	C	G	2604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=1075;ExcessHet=3.0103;FS=5.694;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-17.772;QD=2.44;ReadPosRankSum=6.312;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:936,131:0.12:1067
chr4	376888	rs6854214	C	A	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:154,105:0.41:259
chr4	420389	rs59508097	C	G	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:158,127:0.45:285
chr4	420688	rs2280250	C	T	4722.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:174,215:0.55:389
chr4	429720	rs894534	T	C	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:242,201:0.45:443
chr4	436067	rs61793704	C	A	4320.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:246,196:0.44:442
chr4	438067	rs73070365	C	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:97,74:0.43:171
chr4	466424	.	C	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.812;ClippingRankSum=0.000;DP=793;ExcessHet=3.0103;FS=4.062;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-22.513;QD=0.11;ReadPosRankSum=2.675;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:735,57:0.07:792
chr4	466427	.	G	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.587;ClippingRankSum=0.000;DP=802;ExcessHet=3.0103;FS=4.062;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-22.644;QD=0.06;ReadPosRankSum=2.116;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:744,57:0.07:801
chr4	467896	rs73072110	G	C	3836.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:169,167:0.50:336
chr4	467940	rs78633268	G	A	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:113,134:0.54:247
chr4	495035	.	G	A	2382.77	.	AC=1;AF=0.500;AN=2;DP=189;set=Intersection	GT:AD:AF:DP	0/1:90,96:0.52:186
chr4	499439	rs57099085	T	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.639;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr4	500500	rs17721401	T	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr4	500631	rs4690182	A	G	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	648542	rs144362048	CTG	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-0.483;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:129,15:0.10:144
chr4	648589	rs201367447	C	T	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:119,93:0.44:212
chr4	648643	rs10902758	G	A	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	663908	rs28675771	A	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:155,75:0.33:230
chr4	664028	rs374413250	AT	A,ATT	340.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.790;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.029;SOR=0.557;set=HC	GT:AD:AF:DP	1/2:4,14,21:0.36,0.54:39
chr4	738512	rs6841958	T	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	755025	rs2242233	G	A	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	759709	rs6810428	A	G	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	759733	rs6816483	T	C	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	780286	rs10794536	C	G	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	786401	rs2306251	T	C	17690.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr4	786508	rs2306250	T	C	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	818440	rs2276906	G	A	26572.77	.	AC=2;AF=1.00;AN=2;DB;DP=978;set=Intersection	GT:AD:AF:DP	1/1:0,972:1.00:972
chr4	843622	.	A	AC	1009.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=15.78;ReadPosRankSum=-0.015;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:19,45:0.70:64
chr4	843695	rs8093	A	G	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	845772	rs10031922	T	C	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	858874	rs3214922	T	TC	6000.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	858941	rs1026738	T	C	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	860146	rs2306248	A	G	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	860192	rs1064207	A	G	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	871624	rs1564281	C	T	7504.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr4	871675	rs1564280	A	G	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	875887	rs2279186	G	A	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	877709	rs3736083	T	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	887513	rs33951409	AC	A	3039.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:3,122:0.98:125
chr4	892075	.	G	A	581.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr4	892082	rs3830209	TGCA	T	2102.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	906647	rs2279178	A	G	14566.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr4	942006	rs2290403	G	A	12773.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr4	946226	rs11552301	T	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.33;SOR=1.264;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	946262	.	CTGTGTGTG	C	733.73	.	AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.90;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr4	946974	rs2290405	G	A	11785.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr4	954247	rs3733345	G	T	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	954275	rs3733346	T	C	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=1.934;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	954275	.	TGT	CGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=1;MGOF=27;MMLQ=24;MQ=60.0;NF=79;NR=31;PP=2947;QD=20;SC=GGGAAGATGCTGTGGTCAGGG;SbPval=0.49;Source=Platypus;TC=113;TCF=82;TCR=31;TR=110;WE=954285;WS=954265;set=Platypus	GT:AD:AF:DP	1/1:3,110:0.97:113
chr4	954277	rs3733347	T	C	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=1.761;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	954311	rs3733349	C	T	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	960081	rs4690324	G	A	11657.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr4	960542	rs35117553	T	G	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:225,221:0.50:446
chr4	960713	rs4690196	G	A	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	961191	rs1377587	A	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	961373	rs1377586	G	A	9754.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr4	961397	rs2305487	C	T	4529.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:166,215:0.56:381
chr4	980464	rs4690220	A	G	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	980896	rs11248061	C	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	980932	rs10902762	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	980971	rs10794537	T	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	981743	rs147498923	C	T	1850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=10.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.419;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:102,93:0.48:195
chr4	982852	rs3796621	G	A	9575.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr4	983060	rs3796622	T	C	17458.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr4	983809	rs4690221	C	T	12772.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr4	985727	rs3822020	A	G	9987.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr4	996998	rs113289555	G	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.294;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-1.657;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr4	1006200	rs34627176	G	A	5217.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:248,256:0.51:504
chr4	1018705	rs4647930	C	A	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr4	1019054	rs145808953	CCA	C	562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.746;QD=1.16;ReadPosRankSum=1.386;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:415,71:0.15:486
chr4	1050437	rs7680608	C	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	1050653	rs3816474	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr4	1050849	rs10003009	GT	AC	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr4	1050909	rs9992925	A	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr4	1052100	.	G	A	815	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=6;HapScore=2;MGOF=24;MMLQ=22;MQ=59.47;NF=34;NR=27;PP=815;QD=13.9306756155;SC=GCTTGCGGGGGGGCACTACCT;SbPval=0.32;Source=Platypus;TC=143;TCF=87;TCR=56;TR=61;WE=1052108;WS=1052090;set=Platypus	GT:AD:AF:DP	1/0:82,61:0.43:143
chr4	1052125	.	T	C	717	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=23;MQ=60.0;NF=42;NR=32;PP=717;QD=10.1590704398;SC=GGCTTTCCCATGCTCCTCTGA;SbPval=0.53;Source=Platypus;TC=170;TCF=97;TCR=73;TR=74;WE=1052133;WS=1052115;set=Platypus	GT:AD:AF:DP	1/0:96,74:0.44:170
chr4	1052355	rs2045067	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr4	1067267	rs2290408	G	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	1067638	rs6852155	T	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:91,83:0.48:174
chr4	1075271	rs2290407	C	T	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:102,116:0.53:218
chr4	1084723	rs658846	G	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr4	1087168	rs61648964	A	AAT	5390.73	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:223,140:0.39:363
chr4	1087171	rs59985183	G	T	5403.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:232,149:0.39:381
chr4	1087265	rs1670534	T	C	4747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=1.300;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:409,259:0.39:668
chr4	1087327	rs138488801	G	GCTGCCCAGGCTGGAGCCAGCC	6344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=1.651;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:288,153:0.35:441
chr4	1087329	rs118112880	C	T	6555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.891;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-0.583;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:288,148:0.34:436
chr4	1087338	rs11725984	C	T	5332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-1.724;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:270,153:0.36:423
chr4	1090625	rs4045481	G	A	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=6.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-0.677;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:145,85:0.37:230
chr4	1102050	rs4974644	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	1164277	rs2279279	C	G	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:75,69:0.48:144
chr4	1164552	rs13115935	A	G	10433.73	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr4	1165130	rs11247975	G	T	4968.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:148,218:0.60:366
chr4	1165587	rs2242279	C	G	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr4	1165741	rs922697	A	G	10962.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr4	1165764	rs11538062	C	T	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:146,133:0.48:279
chr4	1194630	rs56401136	T	C	6798.77	.	AC=1;AF=0.500;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	0/1:533,330:0.38:863
chr4	1207517	rs11247979	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr4	1215585	rs1250088	T	C	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:208,145:0.41:353
chr4	1217056	rs2004531	G	A	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,62:0.53:117
chr4	1217078	rs115152027	C	G	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr4	1243329	rs79746330	C	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr4	1243404	rs1680033	C	T	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:127,148:0.54:275
chr4	1243573	rs1680032	T	C	4737.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:229,216:0.49:445
chr4	1244416	rs1732115	A	G	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr4	1283656	rs150170777	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,49:0.58:85
chr4	1317192	rs2141656	C	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr4	1321516	rs2335937	C	A	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:85,108:0.56:193
chr4	1330759	rs1128427	T	C	7084.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:364,351:0.49:715
chr4	1332175	rs13147602	A	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr4	1343405	rs2276903	T	C	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:188,159:0.46:347
chr4	1345647	rs10000797	G	A	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr4	1346682	rs28711287	G	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr4	1348806	rs3903127	A	C	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:82,65:0.44:147
chr4	1369093	rs11941200	CT	GG	1444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.569;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;ReadPosRankSum=0.450;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr4	1373699	rs112142388	C	CTTT	1544.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr4	1373701	rs56108910	C	G	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr4	1374695	rs28614045	C	A	5049.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:236,221:0.48:457
chr4	1374774	rs28522910	C	T	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:80,86:0.52:166
chr4	1374789	rs28733902	A	G	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:68,69:0.50:137
chr4	1377615	rs9996817	A	G	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:116,164:0.59:280
chr4	1388583	rs9328733	A	G	5347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.438;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.890;QD=9.08;ReadPosRankSum=1.261;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:320,269:0.46:589
chr4	1389156	rs71614972	T	C	3909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=0.950;QD=7.90;ReadPosRankSum=0.402;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:263,232:0.47:495
chr4	1397297	rs11945310	T	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr4	1619865	rs11722375	T	C	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	1645758	rs62286258	C	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr4	1645774	rs9997029	T	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr4	1645884	rs9994288	A	G	3936.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:209,196:0.48:405
chr4	1646017	rs4865428	C	G	3740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-0.014;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:254,190:0.43:444
chr4	1656801	rs62287700	A	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:166,136:0.45:302
chr4	1657281	rs79735962	G	A	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:177,188:0.52:365
chr4	1659128	rs56214302	T	C	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:183,148:0.45:331
chr4	1698183	rs798719	C	T	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr4	1714161	rs812821	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.75;ReadPosRankSum=-1.036;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	1718883	rs2236787	A	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr4	1719294	rs2236786	T	C	3526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-1.289;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:169,175:0.51:344
chr4	1719572	rs798751	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr4	1720757	rs798754	A	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr4	1720793	rs148117097	A	AG	1567.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr4	1720794	rs61675353	T	G	1576.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr4	1720824	rs798755	A	G	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:42,62:0.60:104
chr4	1725651	rs3099555	T	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr4	1732573	rs146419121	GGGGT	G	3433.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:67,89:0.57:156
chr4	1737108	rs3752747	C	T	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:77,94:0.55:171
chr4	1737404	rs34859791	C	CCT	8063.73	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:218,215:0.50:433
chr4	1737502	rs11248073	C	T	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:162,208:0.56:370
chr4	1737585	rs11729657	T	C	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:66,78:0.54:144
chr4	1739518	rs140693140	CGCCATCCCT	C	5769.73	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:252,160:0.39:412
chr4	1739592	rs2305188	A	G	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:185,158:0.46:343
chr4	1742400	rs4865463	T	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr4	1742779	rs1530588	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	1746229	rs2290011	G	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:100,71:0.42:171
chr4	1746844	rs8389	A	T	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:117,99:0.46:216
chr4	1795321	rs4450996	C	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=11.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-1.173;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr4	1805296	rs3135883	G	A	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	1806012	rs377096563	TG	T	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.529;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:128,24:0.16:152
chr4	1806834	rs4865476	G	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	1807894	rs7688609	G	A	17314.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr4	1809127	rs34562534	CGT	C	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=32.84;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	1818594	rs9328763	C	T	13849.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr4	1940143	.	CTTTTTTTT	C	149.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.921;QD=14.97;ReadPosRankSum=-0.439;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	1954945	rs489550	A	G	11195.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr4	1961137	rs474235	G	A	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:84,54:0.39:138
chr4	1980346	rs73202836	A	T	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:162,150:0.48:312
chr4	1986542	rs2234570	C	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:93,61:0.40:154
chr4	2044128	rs570712	C	T	3398.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr4	2132943	rs1126406	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr4	2158102	rs200091082	CTT	C,CT	2039.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.657;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=2.008;SOR=0.832;set=HC	GT:AD:AF:DP	1/2:11,54,56:0.45,0.46:121
chr4	2158273	rs3216822	GGA	G	5655.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	2158408	rs428361	C	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	2159449	.	CAAAA	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.420;QD=9.86;ReadPosRankSum=-1.059;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	2176551	.	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.342;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr4	2306039	rs189323732	C	T	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:138,157:0.53:295
chr4	2306053	rs661301	A	G	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr4	2330923	rs60473075	G	C	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:194,199:0.51:393
chr4	2332799	rs1887364	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.22;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	2341137	rs2071681	C	T	3596.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:160,162:0.50:322
chr4	2341194	rs2071680	T	C	5389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-0.982;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:275,269:0.49:544
chr4	2343181	rs2071679	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr4	2438492	rs1203763	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr4	2439670	rs1203762	A	G	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:185,138:0.43:323
chr4	2439738	rs7688771	G	A	7260.77	.	AC=1;AF=0.500;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	0/1:430,362:0.46:792
chr4	2439756	rs5855731	C	CT	13890.73	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:478,423:0.47:901
chr4	2439900	rs7660914	C	A	5455.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;MQ=60.26;set=Intersection	GT:AD:AF:DP	0/1:281,262:0.48:543
chr4	2439965	rs17132558	G	C	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:126,80:0.39:206
chr4	2451694	rs3108494	T	C	18205.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr4	2452933	rs3888113	T	C	7723.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr4	2460571	rs73205493	C	T	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr4	2460803	rs704346	A	G	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	2461888	rs3135152	A	G	10995.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr4	2464179	rs3135150	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	2502299	rs55745322	A	ATT	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	2513620	rs3128839	G	A	7124.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	2513624	rs4974709	A	G	7091.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	2513842	rs2269490	A	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	2698364	rs3733215	C	T	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	2717690	rs2295499	C	T	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	2743999	rs232712	A	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	2744087	rs2269495	G	A	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	2746285	rs13145281	A	C	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr4	2746307	rs11728346	A	C	8344.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr4	2822289	rs2239727	C	A	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	2822467	rs231402	G	T	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr4	2826218	rs34274570	C	CA	2713.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	2826400	rs3213501	T	C	15111.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,555:1.00:555
chr4	2828698	.	GTGTT	G	2790.73	.	AC=1;AF=0.500;AN=2;DP=154;set=Intersection	GT:AD:AF:DP	0/1:72,74:0.51:146
chr4	2828771	rs1794395	T	G	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	2829077	rs2269485	T	C	7182.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr4	2829478	rs13137906	G	C	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	2831383	rs231399	T	G	20552.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.50;SOR=1.183;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr4	2831383	.	TGCTGAGGACT	GGCTGAGGACC,GGCTGAGGACT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=23;MQ=60.0;NF=120,308;NR=150,337;PP=2944,2962;QD=20;SC=TTGGCCTGGCTGCTGAGGACT;SbPval=0.7;Source=Platypus;TC=647;TCF=310;TCR=337;TR=270,645;WE=2831401;WS=2831373;set=Platypus	GT:AF:DP	0/1:0.42:647
chr4	2831393	.	T	C	6434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0.000;DP=648;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-0.334;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:344,303:0.47:647
chr4	2833966	rs231396	G	A	4638.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:185,208:0.53:393
chr4	2901349	rs2071695	A	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	2906453	rs2239728	T	G	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	2906707	rs4961	G	T	8465.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr4	2916762	rs4963	C	G	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,87:0.51:172
chr4	2928125	rs1263345	C	T	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:64,83:0.56:147
chr4	2928413	rs4964	T	C	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=4.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.915;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:89,67:0.43:156
chr4	2933271	rs1263348	G	A	4741.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:242,221:0.48:463
chr4	2934308	rs1263349	G	A	11015.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:456,514:0.53:970
chr4	2935251	rs2301374	T	A	4625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-2.211;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:277,242:0.47:519
chr4	2943277	.	G	A	93.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr4	2965874	.	AC	A	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=7.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.687;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr4	3029588	rs2857844	G	A	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:85,91:0.52:176
chr4	3039150	rs1801058	T	C	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:98,97:0.50:195
chr4	3039311	rs2071689	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr4	3040279	rs11451355	G	GA	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.298;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:43,58:0.57:101
chr4	3076603	.	C	CCAGCAG	1992.73	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr4	3076627	.	G	GCAGCAA	2155	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=2;MMLQ=28;MQ=59.42;NF=22;NR=42;PP=2155;QD=33.71875;SC=AGCAGCAGCAGCAGCAGCAGC;SbPval=0.19;Source=Platypus;TC=142;TCF=38;TCR=104;TR=64;WE=3076635;set=Platypus	GT:AD:AF:DP	1/0:78,64:0.45:142
chr4	3076672	.	A	ACCGCCGCCG	3081.73	.	AC=1;AF=0.500;AN=2;DP=254;set=Intersection	GT:AD:AF:DP	0/1:111,81:0.42:192
chr4	3118116	rs2071655	T	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr4	3144441	rs363107	A	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr4	3162056	rs363099	C	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:97,88:0.48:185
chr4	3174496	rs11276773	TGATTCACA	T	2675.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:69,70:0.50:139
chr4	3180021	rs363096	T	C	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	3210446	.	TA	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=1.433;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:73,19:0.21:92
chr4	3213832	rs362336	G	A	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr4	3215835	rs362331	T	C	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:102,176:0.63:278
chr4	3216815	rs916171	C	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,78:0.56:140
chr4	3219613	rs2857790	A	C	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	3225371	rs82334	A	C	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:112,98:0.47:210
chr4	3225389	rs82333	A	G	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr4	3227419	rs362273	A	G	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:92,88:0.49:180
chr4	3227592	rs2276882	T	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr4	3230804	rs2530598	A	C	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=0.977;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:59,55:0.48:114
chr4	3234980	rs362272	G	A	7446.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:286,344:0.55:630
chr4	3235184	rs3216820	GC	G	4230.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:136,136:0.50:272
chr4	3235241	rs362314	A	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr4	3240159	rs2071704	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:68,70:0.51:138
chr4	3240526	rs2858081	A	G	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr4	3255258	rs2798227	A	G	3466.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:171,152:0.47:323
chr4	3255292	rs2798226	C	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:105,90:0.46:195
chr4	3257373	rs3135173	T	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr4	3257593	rs362287	C	T	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,71:0.51:139
chr4	3263138	rs3095073	G	A	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:132,143:0.52:275
chr4	3265479	rs3095078	C	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr4	3265710	rs3095077	C	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:77,83:0.52:160
chr4	3318413	rs2236052	A	G	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:151,116:0.43:267
chr4	3344891	rs2073286	T	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr4	3417845	rs3213507	G	C	4466.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:185,216:0.54:401
chr4	3443931	rs13108218	A	G	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=28.37;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	3445179	rs113221089	C	T	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr4	3445610	rs6853599	C	T	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr4	3445745	rs4690097	C	T	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr4	3446132	rs1987546	C	G	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	3446284	rs45579537	G	C	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:45,65:0.59:110
chr4	3446513	rs17805201	C	T	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:127,103:0.45:230
chr4	3446751	rs3752439	T	C	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:55,87:0.61:142
chr4	3446883	rs3752442	A	G	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:87,93:0.52:180
chr4	3447156	rs4690098	C	T	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr4	3475252	rs4325970	T	C	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	3487151	rs916189	A	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:168,124:0.42:292
chr4	3487237	rs2006791	A	G	5098.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:275,245:0.47:520
chr4	3498448	rs3135164	T	C	3019.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:204,150:0.42:354
chr4	3501802	rs10805009	G	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr4	3501835	rs2858035	C	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr4	3501849	rs2699409	T	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr4	3501873	rs2699408	T	C	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:77,68:0.47:145
chr4	3501924	rs2858036	A	G	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:148,124:0.46:272
chr4	3502163	rs2858037	A	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chr4	3502303	rs2071700	G	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr4	3514695	rs6789	A	G	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:77,88:0.53:165
chr4	3514938	rs1741553	A	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr4	3516689	rs2515967	T	C	9641.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr4	3516742	rs1794442	A	G	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:76,58:0.43:134
chr4	3517732	rs1794444	G	C	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:152,93:0.38:245
chr4	3521939	rs1741547	T	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,53:0.43:122
chr4	3589623	rs10937959	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:79,51:0.39:130
chr4	3589669	.	G	GACTTCCTGGTGCACCTGC	6065.73	.	AC=1;AF=0.500;AN=2;DP=249;set=Intersection	GT:AD:AF:DP	0/1:96,128:0.57:224
chr4	3589689	rs7657417	C	A	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:252,125:0.33:377
chr4	3589719	rs59190481	CA	C	19334.73	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr4	3589747	rs200944905	T	C	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:367,202:0.36:569
chr4	3589846	rs7672828	T	C	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:313,137:0.30:450
chr4	3589893	rs6843750	G	A	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:174,100:0.36:274
chr4	3590537	rs73199384	G	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.764;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-2.701;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:56,10:0.15:66
chr4	3590549	rs73793633	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.732;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.435;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:71,11:0.13:82
chr4	3590577	rs73793634	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.656;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.222;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:103,22:0.18:125
chr4	3590588	rs73199385	A	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=7.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.200;SOR=1.641;set=HC	GT:AD:AF:DP	0/1:120,24:0.17:144
chr4	3590683	rs62272966	T	G	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.402;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:384,89:0.19:473
chr4	3590711	rs62272967	G	T	2651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.623;QD=5.55;ReadPosRankSum=-0.103;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:386,92:0.19:478
chr4	3590730	rs62272968	G	A	2508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.055;QD=5.44;ReadPosRankSum=0.269;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:373,88:0.19:461
chr4	3590817	rs62272969	T	C	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=5.695;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.214;QD=3.80;ReadPosRankSum=-1.226;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:283,90:0.24:373
chr4	3590823	rs72180705	GACAC	G,GAC	11833.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.57;MQRankSum=0.394;QD=36.30;SOR=1.051;set=HC	GT:AD:AF:DP	1/2:2,228,96:0.70,0.29:326
chr4	3590878	rs62272970	C	T	5425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=6.837;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.928;QD=9.10;ReadPosRankSum=-1.140;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:426,170:0.29:596
chr4	3590911	rs34447251	A	C	5712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=2.843;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.552;QD=8.20;ReadPosRankSum=3.005;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:508,189:0.27:697
chr4	3591015	rs62272971	A	C	4271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=1284;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.294;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:955,321:0.25:1276
chr4	3591049	rs62272972	C	T	12153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.819;ClippingRankSum=0.000;DB;DP=1561;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=0.074;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:1160,390:0.25:1550
chr4	3591069	rs62272973	C	T	12119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;ClippingRankSum=0.000;DB;DP=1509;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-0.340;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:1125,379:0.25:1504
chr4	3769329	rs185354316	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr4	3769789	rs11269124	G	GGGGGAGCTTTCCCAGAGACCC	1379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.884;QD=11.89;ReadPosRankSum=-1.961;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:64,52:0.45:116
chr4	3769798	rs149519379	T	TTCCCAGAGACCCGGGGAGCTC	1635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.033;QD=13.63;ReadPosRankSum=4.557;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:61,59:0.49:120
chr4	3770069	rs76337672	G	C	2467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-2.283;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:175,124:0.41:299
chr4	4190792	rs2920255	A	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	4199083	rs34666677	T	G	5560.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:268,267:0.50:535
chr4	4199634	rs2916414	A	T	10612.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr4	4204299	rs2920182	T	C	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	4207690	rs115174592	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=1.660;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr4	4228029	rs36055674	A	AAAG	625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=-0.156;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr4	4239516	rs62286913	C	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=5.589;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-8.745;QD=4.37;ReadPosRankSum=0.512;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:105,23:0.18:128
chr4	4239539	rs62286914	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=5.963;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-8.064;QD=2.36;ReadPosRankSum=-0.201;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:135,19:0.12:154
chr4	4241953	rs3817719	T	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr4	4249297	rs2916469	C	T	9766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.50;ReadPosRankSum=-0.103;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:275,253:0.48:528
chr4	4249300	rs2916468	T	C	9751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=-0.010;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:282,257:0.48:539
chr4	4249414	rs2980101	AT	GC	13393.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;JOINED;set=Intersection	GT:AD:AF:DP	0/1:444,356:0.45:800
chr4	4249483	rs2916466	C	T	12691.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.87;SOR=1.649;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr4	4249483	.	CA	TA,TC	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=24;MQ=60.0;NF=107,40;NR=225,101;PP=2962,1819;QD=20;SC=CAGATATTTCCAGTAATTCGC;SbPval=0.5;Source=Platypus;TC=332;TCF=107;TCR=225;TR=332,141;WE=4249492;WS=4249473;set=Platypus	GT:AF:DP	0/1:1.00:332
chr4	4249484	rs2916465	A	C	3057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.146;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:203,155:0.43:358
chr4	4249909	rs2272746	C	T	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:157,146:0.48:303
chr4	4249974	rs2272745	C	A	3956.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:195,194:0.50:389
chr4	4250133	rs2272744	G	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr4	4275976	rs11723469	A	C	1984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.57;ReadPosRankSum=-0.374;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:42,50:0.54:92
chr4	4275986	rs11723471	A	C	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=-0.523;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:57,66:0.54:123
chr4	4276132	rs7376390	T	C	16684.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr4	4285221	rs2980214	A	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	4301537	rs60953649	T	A	818.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr4	4304337	rs2916382	C	T	9858.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr4	4393068	rs3792686	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	4425422	rs10675705	C	CAG	1282.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr4	4463664	rs114558801	C	G	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:151,96:0.39:247
chr4	4861609	rs186861426	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr4	4862125	rs149370601	AGGGGGCCGGGT	A	3397.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	4864230	rs10014077	A	G	4384.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:155,188:0.55:343
chr4	4864299	rs10000804	G	A	5851.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:217,249:0.53:466
chr4	4864404	rs33929633	CT	C	8602.73	.	AC=1;AF=0.500;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	0/1:454,498:0.52:952
chr4	4864876	rs8670	C	T	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:104,160:0.61:264
chr4	5016841	rs6847131	G	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	5017146	rs67449859	A	AT	1114.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=42.87;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	5017149	.	T	TTCATTTC	1405	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=2;MGOF=16;MMLQ=28;MQ=60.4;NF=0;NR=19;PP=1405;QD=75.4736842105;SC=AAATTTCATTTCCATAATTTT;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=19;WE=5017158;WS=5017139;set=Platypus	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	5017150	.	C	A	445	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=3;HapScore=2;MGOF=16;MMLQ=23;MQ=60.0;NF=3;NR=17;PP=445;QD=23.9885606274;SC=AATTTCATTTCCATAATTTTC;SbPval=0.55;Source=Platypus;TC=21;TCF=3;TCR=18;TR=20;WE=5017158;WS=5017139;set=Platypus	GT:AD:AF:DP	1/1:1,20:0.95:21
chr4	5017150	rs34659865	C	CATTTCA	1154.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=44.41;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	5018702	rs11724788	G	A	8838.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr4	5053674	rs10222952	C	T	7241.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:305,342:0.53:647
chr4	5128650	rs895679	T	C	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	5418383	rs2301858	G	A	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr4	5418485	rs2301857	C	T	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:205,153:0.43:358
chr4	5418539	rs168985	C	T	10721.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr4	5448293	.	C	CA	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.854;QD=1.92;ReadPosRankSum=0.507;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:131,45:0.26:176
chr4	5448319	rs3733183	T	C	2751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.916;QD=9.93;ReadPosRankSum=-0.618;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:132,145:0.52:277
chr4	5448429	rs3733182	A	G	5745.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:247,279:0.53:526
chr4	5500511	rs13116133	A	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	5527008	rs2267655	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr4	5527249	rs2267654	A	G	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:109,100:0.48:209
chr4	5528115	rs3078935	ATT	A	1591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.050;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.799;QD=13.15;ReadPosRankSum=-0.278;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:50,71:0.59:121
chr4	5570104	rs12508361	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	5570221	rs12511039	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr4	5577884	rs6840591	T	C	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	5617295	rs10025164	T	C	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:163,136:0.45:299
chr4	5617369	rs10032860	G	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:63,44:0.41:107
chr4	5620263	rs140951974	G	A	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:63,82:0.57:145
chr4	5624670	rs730469	T	C	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:142,107:0.43:249
chr4	5630229	.	TAGC	T	1824.73	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr4	5630470	rs35103377	TA	T	486.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr4	5642161	rs751841	A	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr4	5642274	rs13131655	T	C	3078.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:152,140:0.48:292
chr4	5664798	rs147183830	CAT	C	2545.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:69,70:0.50:139
chr4	5686924	rs957727	G	A	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	5686967	rs957726	C	T	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	5687263	rs998092	A	G	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	5690902	rs4689278	T	C	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:206,178:0.46:384
chr4	5693112	rs35705473	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr4	5710189	rs6820907	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr4	5713312	rs2276874	G	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.160;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr4	5730954	rs2276875	G	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:82,87:0.51:169
chr4	5733068	rs1871586	G	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,40:0.40:101
chr4	5743509	rs6446393	C	T	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	5743512	rs6414624	T	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.59;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	5746916	rs4689313	C	T	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.167;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:51,48:0.48:99
chr4	5747072	rs2286343	C	T	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:102,100:0.50:202
chr4	5747078	rs2286342	A	G	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:94,95:0.50:189
chr4	5747131	rs13145958	C	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr4	5749784	rs4689312	G	A	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	5749804	rs4689311	G	A	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	5749804	.	GAGCACGCACC	AAGCACGCACC,AAGCACGCACT	1491	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.11;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=23;MMLQ=22;MQ=60.0;NF=113,59;NR=55,28;PP=1269,1491;QD=7.76054293183;SC=TGTAATTCCCGAGCACGCACC;SbPval=0.51;Source=Platypus;TC=169;TCF=114;TCR=55;TR=168,87;WE=5749822;WS=5749794;set=Platypus	GT:AF:DP	0/1:0.99:169
chr4	5749814	rs4688964	C	T	2348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.405;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=3.469;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:102,103:0.50:205
chr4	5749904	rs4688963	T	C	11595.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr4	5749961	rs4688962	G	C	9427.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr4	5750084	rs4688961	A	T	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	5754544	rs899691	T	C	2653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.534;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:107,129:0.55:236
chr4	5754579	rs28483498	C	T	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:138,162:0.54:300
chr4	5755373	rs7660793	G	C	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	5755542	rs2302075	C	A	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	5757932	rs5855888	GA	G	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.823;QD=0.81;ReadPosRankSum=0.963;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:149,45:0.23:194
chr4	5795412	rs11737221	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.714;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:35,24:0.41:59
chr4	5803633	rs2306400	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr4	5803669	rs1031919	T	C	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	5803829	rs3214940	AC	A	2030.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:88,83:0.49:171
chr4	5803903	rs2306399	A	G	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.614;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:58,52:0.47:110
chr4	5803903	.	AC	GT	523	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=28;MQ=60.0;NF=15;NR=25;PP=523;QD=14.4116968716;SC=GATGTCAGATACTGTGAATTT;SbPval=0.31;Source=Platypus;TC=98;TCF=31;TCR=67;TR=40;WE=5803912;WS=5803893;set=Platypus	GT:AD:AF:DP	0/1:58,40:0.41:98
chr4	5803904	rs1031918	C	T	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.61;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	5812195	rs2279250	A	G	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	5812778	rs2291151	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr4	5830414	rs6818391	T	C	10811.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr4	5838347	rs2240494	G	A	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr4	5851234	.	T	TA	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.892;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:55,39:0.41:94
chr4	5853324	rs79617626	G	A	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=1.024;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:41,54:0.57:95
chr4	5863032	rs13130069	G	A	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	5925186	rs4348041	G	A	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	5966618	rs6828891	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=15.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-0.261;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr4	5969113	rs9997727	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr4	5969235	rs7690750	A	G	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:76,106:0.58:182
chr4	5969252	rs7690889	A	G	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:73,97:0.57:170
chr4	5969292	rs6446420	C	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr4	5969303	rs6446421	T	A	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.609;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-1.049;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:41,54:0.57:95
chr4	5969364	rs6446422	T	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr4	5975538	rs16837960	G	A	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:129,148:0.53:277
chr4	5977462	rs4689291	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	5977553	rs4689290	T	C	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr4	5977566	rs4689289	C	A	6329.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	5990110	rs4689287	C	A	16042.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr4	5990339	rs6845455	G	A	11126.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr4	5990551	rs58136927	G	A	12186.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr4	5990599	rs751240	T	C	11569.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr4	5990791	rs2016083	A	G	20083.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr4	5990868	rs143859826	CCT	C	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=5.263;QD=0.31;ReadPosRankSum=0.010;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:476,58:0.11:534
chr4	5991384	rs4234711	T	C	16719.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr4	5991476	rs4266238	G	A	9517.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr4	6031632	rs10461053	T	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr4	6050759	rs60586285	T	G	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:116,110:0.49:226
chr4	6087371	rs73196084	G	A	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	6107765	rs10000296	T	G	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:131,115:0.47:246
chr4	6114420	rs1543965	GCC	TAA	10434.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;JOINED;set=Intersection	GT:AD:AF:DP	0/1:356,274:0.43:630
chr4	6279047	rs10937714	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr4	6291003	rs4689394	C	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr4	6292751	.	G	GTGGCAGGGGCA	2954	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=4;MGOF=20;MMLQ=24;MQ=60.4;NF=13;NR=1;PP=2954;QD=20;SC=GAGAGTGGGCGTGGCGCGATG;SbPval=0.62;Source=Platypus;TC=44;TCF=41;TCR=3;TR=14;WE=6292766;WS=6292746;set=Platypus	GT:AD:AF:DP	1/0:30,14:0.32:44
chr4	6292755	rs55640037	C	CAGGGGCATG	723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=1.987;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr4	6292758	.	G	A	1753	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=4;MGOF=20;MMLQ=27;MQ=60.34;NF=21;NR=1;PP=1753;QD=81.2623278431;SC=GGCGTGGCGCGATGTCCTCTT;SbPval=0.73;Source=Platypus;TC=51;TCF=48;TCR=3;TR=22;WE=6292766;WS=6292746;set=Platypus	GT:AD:AF:DP	1/0:29,22:0.43:51
chr4	6292758	rs56102017	G	GCA	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.658;QD=15.73;ReadPosRankSum=2.209;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr4	6292799	rs5018647	A	C	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr4	6292818	rs5018648	C	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr4	6292909	rs9998519	C	T	7232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=0.448;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:212,189:0.47:401
chr4	6292915	rs10010131	A	G	7215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=1.556;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:229,193:0.46:422
chr4	6293446	rs13101355	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr4	6293474	rs13147655	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr4	6293696	rs1801213	C	G	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:143,136:0.49:279
chr4	6293802	rs7655482	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr4	6302519	rs1801212	G	A	31715.77	.	AC=2;AF=1.00;AN=2;DB;DP=1186;set=Intersection	GT:AD:AF:DP	1/1:0,1184:1.00:1184
chr4	6302707	rs1801206	C	T	11062.77	.	AC=1;AF=0.500;AN=2;DB;DP=1038;set=Intersection	GT:AD:AF:DP	0/1:527,505:0.49:1032
chr4	6303022	rs1801214	C	T	8260.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:417,388:0.48:805
chr4	6303354	rs734312	G	A	6580.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:284,300:0.51:584
chr4	6303955	rs1046314	G	A	4867.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:235,234:0.50:469
chr4	6304087	rs1046316	A	G	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:174,145:0.45:319
chr4	6304242	rs1046317	T	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr4	6325018	rs3796402	A	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr4	6325086	rs3796403	G	A	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:133,163:0.55:296
chr4	6335186	rs4689405	C	T	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr4	6335203	rs10937722	C	T	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:77,74:0.49:151
chr4	6335492	rs73204090	G	A	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:73,60:0.45:133
chr4	6374189	rs6837903	A	G	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=2.685;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	6374230	rs35520578	C	CA	7495.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr4	6374468	rs12511721	T	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr4	6377530	rs4688997	C	G	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	6377534	rs4688998	A	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	6377713	rs4234738	G	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	6382919	rs62285930	C	T	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:141,143:0.50:284
chr4	6384369	rs6845693	C	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.91;MQRankSum=3.460;QD=2.91;ReadPosRankSum=3.187;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr4	6384394	.	TCTCTCTCTCACACACACA	T	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.01;MQRankSum=2.594;QD=4.62;ReadPosRankSum=2.973;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr4	6415803	rs71872229	ATGTGTGTG	A,ATGTG	1136.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.357;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.80;MQRankSum=-0.147;QD=39.20;ReadPosRankSum=0.201;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:2,15,12:0.52,0.41:29
chr4	6536979	rs13141184	G	A	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chr4	6578487	rs4689485	A	G	7199.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	6580283	rs3764809	A	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr4	6591015	rs3733605	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr4	6594827	rs10937747	A	G	10564.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr4	6594947	rs2301796	A	C	6926.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:423,340:0.45:763
chr4	6596360	rs2301795	G	A	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:128,132:0.51:260
chr4	6596476	rs2301794	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr4	6600012	rs2301790	A	G	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:142,109:0.43:251
chr4	6602255	rs2301789	A	G	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,71:0.48:149
chr4	6602516	rs12639813	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr4	6606864	rs2301788	A	G	6637.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:408,321:0.44:729
chr4	6619052	rs4689488	A	G	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	6619165	rs4689489	A	G	11347.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr4	6619204	rs4689490	G	A	16118.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr4	6623032	rs4234768	G	T	12956.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:1,491:1.00:492
chr4	6698500	rs113431497	C	CTGAGCCTGAA	668.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	6698667	rs11734898	T	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	6698706	rs11733989	A	C	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	6718775	rs3172604	G	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr4	6925237	rs34860182	C	G	7726.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:358,382:0.52:740
chr4	6955922	rs4484301	C	G	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr4	6956134	rs11732898	T	C	4429.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:192,214:0.53:406
chr4	6968942	rs9291126	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr4	6969163	rs62289166	A	G	4404.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:188,208:0.53:396
chr4	6988994	.	CGGGA	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.152;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr4	6996129	rs3892490	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr4	7000680	rs34221933	G	A	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:76,59:0.44:135
chr4	7002803	rs2301817	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr4	7006398	rs2301818	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr4	7006541	rs2301819	G	A	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=3.126;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:87,74:0.46:161
chr4	7027041	rs6834102	C	T	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr4	7044357	rs871133	A	G	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	7044380	rs871134	C	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr4	7045657	rs6842659	C	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr4	7064003	rs11422620	A	AC	3028.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.86;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	7064026	.	C	T	1746.77	.	AC=1;AF=0.500;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	0/1:89,84:0.49:173
chr4	7064214	rs9291128	T	G	16754.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr4	7064217	.	TTATATA	T	2998	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=2;HapScore=1;MGOF=12;MMLQ=24;MQ=59.99;NF=4;NR=126;PP=2998;QD=20;SC=AAAGGGATATTTATATATATA;SbPval=0.89;Source=Platypus;TC=207;TCF=11;TCR=196;TR=130;WE=7064233;WS=7064192;set=Platypus	GT:AD:AF:DP	1/1:77,130:0.63:207
chr4	7064218	rs60881938	TA	T	2604.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=1.609;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:32,153:0.83:185
chr4	7064219	rs28636568	A	T	57.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-0.793;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:156,29:0.16:185
chr4	7064220	rs376145748	TATATA	T	2376.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=1.975;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:47,143:0.75:190
chr4	7064243	rs6812318	C	T	3999.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=5.343;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.16;ReadPosRankSum=0.933;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:10,179:0.95:189
chr4	7064277	rs4689585	C	T	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	7066052	rs2359011	TA	GC	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	7069606	rs2276969	G	A	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	7069804	rs3822270	C	A	22398.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	1/1:0,814:1.00:814
chr4	7069901	rs3822269	T	C	11225.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr4	7312054	rs3930439	A	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:86,72:0.46:158
chr4	7312145	rs11942816	T	C	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:100,110:0.52:210
chr4	7398194	rs9991834	A	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr4	7435013	rs11721763	G	A	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:153,147:0.49:300
chr4	7435379	rs4689746	A	G	14430.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr4	7435443	rs6843370	G	A	6305.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:250,275:0.52:525
chr4	7436486	rs11548325	C	A	4433.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:196,207:0.51:403
chr4	7461826	rs10655902	C	CCCA	17514.73	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr4	7461915	rs12498272	T	A	9067.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr4	7655855	rs2285789	C	T	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	7665985	rs56160934	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr4	7666241	rs28634313	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:72,77:0.52:149
chr4	7668967	rs13129869	C	T	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:135,124:0.48:259
chr4	7684641	rs4689820	C	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	7684661	rs4689821	CT	AC	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	7691193	rs929264	G	C	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:225,166:0.42:391
chr4	7691419	rs2285785	A	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:96,73:0.43:169
chr4	7716910	rs28531835	C	T	10565.77	.	AC=1;AF=0.500;AN=2;DB;DP=1125;set=Intersection	GT:AD:AF:DP	0/1:600,522:0.47:1122
chr4	7716932	rs6816604	T	C	34361.77	.	AC=2;AF=1.00;AN=2;DB;DP=1265;set=Intersection	GT:AD:AF:DP	1/1:0,1263:1.00:1263
chr4	7728684	rs149143472	A	G	2172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-0.209;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:96,102:0.52:198
chr4	7731310	rs1544402	G	A	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:88,88:0.50:176
chr4	7731560	rs1076226	T	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr4	7736455	rs6843811	G	A	10735.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr4	7738730	rs6840685	A	C	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,68:0.49:140
chr4	7741851	rs12501485	A	G	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr4	7783163	rs28542374	G	A	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	7802227	rs28406288	G	C	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	7817698	.	G	GT	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=4.516;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.092;QD=1.00;ReadPosRankSum=-1.775;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:245,53:0.18:298
chr4	7820727	rs4447865	T	A	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	7857230	rs61742221	C	T	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	7985392	rs4696933	C	G	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	8006988	rs77249161	T	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr4	8010068	rs75370358	C	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	8010757	rs74845648	G	A	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:173,158:0.48:331
chr4	8031471	rs2385904	A	G	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:155,148:0.49:303
chr4	8031590	rs11942146	T	G	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,71:0.51:138
chr4	8034497	rs13151663	G	A	8175.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr4	8062638	rs6853485	A	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:80,91:0.53:171
chr4	8062689	rs6811028	T	C	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:106,102:0.49:208
chr4	8108471	rs13140321	G	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr4	8129382	rs13143332	A	G	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:92,74:0.45:166
chr4	8211280	.	A	G	828.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr4	8211624	rs1712316	C	T	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	8214636	rs1712287	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	8216099	rs2291069	G	A	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	8216391	rs1618403	C	T	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	8221058	rs4696782	G	A	10237.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr4	8224414	rs113477900	T	TGTC	961.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	8227044	rs2279196	G	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	8228632	rs1678300	A	C	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	8228731	rs1281145	T	C	8576.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr4	8228894	rs1292647	T	C	5555.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr4	8229218	rs1281146	A	G	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr4	8229326	rs1281147	T	C	7429.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr4	8237096	rs1678260	G	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	8242466	rs1281103	A	G	13587.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr4	8284084	rs4696789	T	C	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	8288581	rs7678398	A	C	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	8288612	rs7678420	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	8293974	rs4235258	C	T	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	8304038	rs4696797	T	C	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	8304097	rs4696798	G	T	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	8306028	rs4696801	C	T	6502.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr4	8306091	rs4696802	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	8358361	rs3733532	G	A	18503.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:75,665:0.90:740
chr4	8368604	rs708244	C	T	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr4	8368869	rs827000	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr4	8368944	rs12646666	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr4	8375342	rs2280571	G	A	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:180,180:0.50:360
chr4	8376402	rs7700122	T	G	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	8383167	rs2293230	A	G	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,63:0.53:119
chr4	8390859	rs13136987	G	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:68,77:0.53:145
chr4	8391049	rs2242483	A	G	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:175,174:0.50:349
chr4	8394376	rs11934603	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr4	8415982	rs2245515	C	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr4	8451656	.	A	ATTTTCTTTTC	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=-0.000;DP=48;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=2.744;QD=3.07;ReadPosRankSum=-0.886;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr4	8454469	rs113210446	G	GA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.375;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr4	8454639	rs1880024	A	G	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:126,95:0.43:221
chr4	8456701	rs2002860	C	G	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr4	8473050	rs2631768	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr4	8582742	rs17844776	C	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:73,80:0.52:153
chr4	8582856	rs17844777	T	G	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:162,162:0.50:324
chr4	8583237	rs145575866	C	T	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:201,174:0.46:375
chr4	8583312	rs17844778	A	C	6713.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:325,320:0.50:645
chr4	8584448	rs6824455	T	C	4956.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:231,225:0.49:456
chr4	8584493	rs6857501	C	T	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:106,109:0.51:215
chr4	8584511	rs6857510	C	A	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:78,87:0.53:165
chr4	8589023	rs9685931	G	A	8125.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:446,405:0.48:851
chr4	8589155	rs9683448	C	T	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:110,113:0.51:223
chr4	8589206	rs10938724	A	G	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,64:0.51:125
chr4	8594574	rs2302583	T	C	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:123,114:0.48:237
chr4	8594815	rs4411969	T	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:69,88:0.56:157
chr4	8601278	rs41289049	C	T	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:266,182:0.41:448
chr4	8601298	rs11723641	G	A	3981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.242;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:263,209:0.44:472
chr4	8602793	rs4299567	T	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.62;SOR=2.628;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	8602798	rs2241069	G	C	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.63;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	8602816	rs4594711	A	G	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	8602884	rs4301095	T	C	6475.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr4	8602935	rs4431213	A	G	9874.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,384:0.99:386
chr4	8607587	rs4696703	G	A	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	8608634	rs2302580	C	T	5969.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr4	8608934	rs2302579	C	T	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	8608979	rs2302578	G	A	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	8613103	rs62288589	G	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr4	8613917	rs12511563	CG	GT	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.41;SOR=2.608;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	8613961	rs13120023	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	8616054	rs2302572	C	T	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	8616070	rs2302571	T	C	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	8616096	rs1131140	T	C	7343.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	8616179	rs7378066	T	C	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr4	8620045	rs4444816	A	G	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	8620325	rs4696872	A	G	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr4	8620873	rs13132404	G	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	8621194	rs28514374	A	G	10991.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,403:1.00:404
chr4	8621386	rs1050464	A	G	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	8869587	rs13303225	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	9370908	rs11938651	C	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	9784631	rs6283	C	T	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	9785134	rs1967551	T	C	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr4	9889448	rs6818572	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr4	9892102	rs10939602	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr4	9909850	rs2280204	T	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr4	9943700	rs4292327	G	A	3764.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:206,190:0.48:396
chr4	9982191	rs13115193	C	T	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr4	9982330	rs13125646	A	G	8017.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	9998440	rs10939650	C	T	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	9998493	rs13113918	A	G	7852.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr4	9998605	rs28592748	T	C	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	10020564	rs2240721	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr4	10020757	rs2240722	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr4	10022981	rs2276961	C	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:93,73:0.44:166
chr4	10027509	rs61256984	GA	G	955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.081;QD=7.03;ReadPosRankSum=1.298;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:72,64:0.47:136
chr4	10027542	rs6820230	C	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:81,70:0.46:151
chr4	10027643	rs6449237	A	G	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.734;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.006;QD=11.02;ReadPosRankSum=1.693;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:77,78:0.50:155
chr4	10027744	rs6449238	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr4	10085949	rs2241473	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr4	10086015	rs2241474	T	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr4	10086188	rs2241475	T	G	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr4	10089865	rs734122	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr4	10090178	rs4235349	T	C	15234.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr4	10094671	rs3822247	G	A	5127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.155;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:313,270:0.46:583
chr4	10094698	rs3822246	G	A	6640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=1.682;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:292,318:0.52:610
chr4	10094783	rs3822245	T	C	10022.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr4	10099277	rs41268389	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-0.305;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr4	10099340	rs13441	T	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	10099542	.	C	CAA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.595;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr4	10100801	rs2241484	T	C	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.72;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	10100812	rs2241485	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=7.168;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	10105797	rs3756223	T	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr4	10446385	rs9291410	C	T	13741.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr4	10446906	rs10016022	A	G	19503.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,719:1.00:719
chr4	10447985	rs35177766	AT	A	5364.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	10502937	rs2903960	T	G	8917.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr4	10509699	rs2868941	T	C	7418.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr4	10525711	rs148908322	A	AGAG	2103.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.641;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.437;QD=36.27;ReadPosRankSum=0.353;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,54:0.93:58
chr4	10527342	rs2108878	C	T	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	10543503	.	G	GT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.010;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr4	10573410	rs17383033	C	A	13231.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:1,497:1.00:498
chr4	10586376	rs6816045	C	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	10586530	rs6846414	T	C	16040.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr4	11370592	rs6448674	T	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-0.566;QD=8.97;ReadPosRankSum=1.465;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr4	13475414	rs34962392	TATC	T	2539.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chr4	13548796	rs2080023	T	G	10696.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=3.324;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.64;ReadPosRankSum=-0.672;SOR=0.461;set=HC	GT:AD:AF:DP	1/1:1,386:1.00:387
chr4	13548911	rs73231543	C	A	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	13571867	rs17806666	C	A	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	13578405	rs2052159	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	13582680	.	TA	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.037;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr4	13583838	rs17806907	C	T	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	13584108	rs17745075	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	13593336	rs758975	A	G	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	13604182	rs17745676	T	C	12727.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr4	13604418	rs17745712	G	C	17126.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr4	13606576	rs1971278	A	T	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr4	13612486	rs1491251	C	T	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	13615174	rs2035820	G	A	14029.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr4	13615293	rs2109917	C	A	7474.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr4	13629721	rs12499127	G	A	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	15005749	.	C	CGGGGGGGGGGGGGGGG	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=183.451;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.326;QD=1.03;ReadPosRankSum=-5.226;SOR=6.993;set=HC	GT:AD:AF:DP	0/1:283,32:0.10:315
chr4	15443685	rs13108125	T	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr4	15480225	rs9993580	A	C	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	15482477	rs10000250	A	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	15482809	rs6810461	G	A	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	15513147	rs1058412	C	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	15530124	rs4698395	C	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	15538744	rs1558572	T	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	15539498	rs1861044	A	G	6300.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr4	15552295	rs2041672	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.68;ReadPosRankSum=-0.355;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	15552423	rs2041673	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr4	15560750	rs35309200	G	T	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:110,93:0.46:203
chr4	15562342	rs67224550	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	15568992	rs13121363	T	C	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:63,100:0.61:163
chr4	15569018	rs73125627	G	A	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:130,95:0.42:225
chr4	15569146	rs13116304	A	C	3470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=1.174;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:142,163:0.53:305
chr4	15575718	rs4280723	C	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr4	15575751	rs4280724	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr4	15587897	rs6832789	A	T	9157.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:1,336:1.00:337
chr4	15589345	rs28419165	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr4	15602773	rs80080596	C	CTTA	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	15603069	rs1134634	G	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr4	15632228	rs3775956	A	G	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr4	15640168	rs3182730	C	T	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:163,162:0.50:325
chr4	15657036	rs184805452	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr4	15689632	rs11729955	G	A	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-1.439;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:45,59:0.57:104
chr4	15689928	rs4235380	G	A	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:109,86:0.44:195
chr4	15690233	rs6449160	C	A	6308.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	15706466	rs3756247	T	C	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:111,112:0.50:223
chr4	15706502	rs35181008	G	GTC	7446.73	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:184,195:0.51:379
chr4	15717321	rs3213710	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr4	15737882	rs4698413	C	T	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:101,87:0.46:188
chr4	15739488	rs4283655	A	G	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	15780358	rs11574921	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr4	15826415	rs147070346	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-1.459;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr4	15849986	rs3796863	G	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr4	15937526	rs1042510	G	A	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:105,128:0.55:233
chr4	15937731	rs2072313	T	C	10834.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr4	15964485	rs758329	G	A	8536.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr4	15964573	rs758328	A	G	10917.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr4	15972905	rs11735976	T	C	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr4	15977572	rs11734657	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	15981885	rs3841512	G	GA	727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.321;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:56,45:0.45:101
chr4	15981926	rs58036643	TA	T	1113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.026;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:100,111:0.53:211
chr4	15982163	rs34269395	A	AG	1576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=0.565;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:63,61:0.49:124
chr4	15982229	rs368346472	ATTTTTTT	A	726.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.64;ReadPosRankSum=-3.948;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr4	15985984	rs3815344	G	C	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:131,133:0.50:264
chr4	15986042	rs7675574	G	A	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	15986113	rs7659341	T	C	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	15987509	.	T	TTTAAG,TTTAAGTATGCTTATTTAATCTGTATTAAATATTTAATACAGA	1081.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=32;set=Intersection	GT:AF:DP	1/1:1.00:24
chr4	15987512	.	T	TGCTTATTTAATCTGTATTAAATATTTAATACAGATAA	2036.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=81.47;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	15989191	rs2191004	C	T	2921.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.988;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.432;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=-0.731;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:11,130:0.92:141
chr4	15989500	rs34264338	C	CT	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.741;QD=5.44;ReadPosRankSum=-0.700;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:19,28:0.60:47
chr4	15991275	rs2240685	G	A	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:92,93:0.50:185
chr4	15992654	rs2058145	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr4	15992702	rs2058144	C	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:92,92:0.50:184
chr4	16002050	rs6449212	T	C	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	16002317	rs56413603	C	T	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr4	16005061	rs6825026	T	C	7926.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:329,367:0.53:696
chr4	16017885	rs139736530	T	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr4	16017898	rs2286458	T	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr4	16017960	rs2286457	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr4	16024885	rs2013854	A	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:105,81:0.44:186
chr4	16025837	rs17478336	C	T	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,57:0.47:120
chr4	16035209	.	C	CTTT	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=7.549;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.791;QD=13.70;ReadPosRankSum=1.348;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr4	16037352	rs2078622	C	T	3942.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:181,190:0.51:371
chr4	16168512	rs11724423	C	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr4	16172181	rs1662654	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr4	16189991	rs75841626	A	T	2007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.139;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:82,96:0.54:178
chr4	16190073	rs28645901	T	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr4	16192413	rs7666361	C	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	16198378	rs10939652	A	G	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:84,62:0.42:146
chr4	16198439	rs10939653	T	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:63,35:0.36:98
chr4	16215537	rs12651110	T	G	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:207,180:0.47:387
chr4	16227781	rs3749543	A	G	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	16227823	rs3749544	G	A	206.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.472;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr4	16228538	rs13136055	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr4	16510131	rs9993371	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr4	16513748	rs6824949	T	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr4	16590588	rs11945652	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:97,101:0.51:198
chr4	16597280	rs1506462	T	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	16675898	rs4698505	C	A	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	16676046	rs7699941	A	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr4	16753863	rs283027	A	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	17489003	rs2597767	T	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.37;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	17492145	rs731437	T	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	17494054	rs2597772	A	G	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	17503382	rs2597775	C	T	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	17503544	rs2597776	C	T	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	17511595	rs10020171	A	T	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:83,92:0.53:175
chr4	17511634	rs10030250	G	A	1096.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:69,60:0.47:129
chr4	17513458	rs2244804	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	17513724	rs2244788	G	C	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	17513757	rs67496406	CG	C	862.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=10.791;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.697;QD=11.66;ReadPosRankSum=-0.944;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr4	17517099	rs1551091	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	17517242	rs28382333	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr4	17581617	rs10939736	T	A	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	17581643	rs35153429	CAG	C	4279.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	17583200	rs5856433	TAA	T	976.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;QD=25.04;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr4	17586703	rs3733576	T	C	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	17590671	rs17499929	G	A	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	17590686	rs35467396	AT	A	732.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=6.056;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.350;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:41,57:0.58:98
chr4	17590734	rs11737120	A	T	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	17599894	rs3775927	G	T	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	17608620	rs4698628	A	G	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	17608884	rs4698629	C	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	17625209	rs11733730	G	C	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	17627294	rs2315552	A	G	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	17627332	rs2315553	T	C	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr4	17634213	rs6825562	A	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=26.24;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	17634255	rs6847966	G	A	7785.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	17634256	rs142873186	C	CAA	7495.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	17635556	rs140729140	CAAAAT	C	2798.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	17636507	rs3214318	G	GT	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.25;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	17640858	rs6811887	C	T	8361.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr4	17643620	rs28501187	G	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	17643848	rs2286771	G	A	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	17649233	rs3733577	T	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	17649494	rs6813374	T	C	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.49;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	17649499	rs6813375	T	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.45;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	17654648	rs3815413	T	C	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	17659936	rs10939742	G	T	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	17660082	rs1860596	C	T	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	17660237	rs2302391	T	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	17689901	rs11306510	AT	A	367.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.35;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	17689974	rs4698646	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	17694880	rs6449324	G	C	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	17694916	rs3822235	A	G	6575.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	17694943	rs3733579	A	G	9707.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr4	17706928	rs13139898	T	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr4	17707301	rs72619125	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr4	17711076	rs3733583	T	C	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:145,154:0.52:299
chr4	17813711	rs1395371	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr4	17814459	rs142352132	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr4	17818885	rs2302212	T	C	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:126,140:0.53:266
chr4	17841465	rs2286537	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr4	17841948	rs2286534	T	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr4	17844029	rs17585261	G	A	3771.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:150,179:0.54:329
chr4	17875735	rs78581007	TCTC	T	10877.73	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:269,283:0.51:552
chr4	17885296	rs139656197	A	AAC	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.171;QD=9.66;ReadPosRankSum=-0.903;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr4	17886146	rs17526944	A	G	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:144,143:0.50:287
chr4	20256722	rs1323066	G	A	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	20259621	rs139749288	A	AT	481.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	20259622	rs61790829	A	T	490.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	20270600	rs2196476	G	A	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:57,64:0.53:121
chr4	20490710	rs543593	T	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr4	20492380	rs485909	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr4	20520993	rs519813	T	C	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	20526985	rs146437952	C	CAT	868.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	20541005	rs35993588	AG	A	3757.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:134,98:0.42:232
chr4	20541008	rs3842004	C	A	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:137,102:0.43:239
chr4	20544184	rs7690492	C	T	5843.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:298,280:0.48:578
chr4	20547578	rs12501870	G	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;MQ=60.49;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	20555358	.	TTG	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.145;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr4	20569099	rs2290750	A	G	4119.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:206,191:0.48:397
chr4	20569254	rs12506323	A	G	2457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.135;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=5.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=0.750;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:80,65:0.45:145
chr4	20569259	rs2290751	C	T	2469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=5.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=0.098;SOR=1.243;set=HC	GT:AD:AF:DP	0/1:75,65:0.46:140
chr4	20570787	rs17620615	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-2.305;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr4	20599758	rs3775833	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr4	20599783	rs67622693	CAT	C	973.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr4	20599796	rs12507257	A	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr4	20611818	rs35891001	C	T	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,58:0.66:88
chr4	20620683	rs1379659	G	A	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	20620789	.	G	GA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.722;QD=3.98;ReadPosRankSum=1.195;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr4	20709238	rs35495469	G	GA	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr4	20714642	rs3764964	T	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr4	20714924	rs12331966	A	G	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr4	20715189	rs73240290	A	G	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr4	20715244	rs62410126	A	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr4	20726537	rs10654905	C	CTT	335.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr4	20733708	rs111474115	C	CA	1540.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:64,74:0.54:138
chr4	20734171	rs6812257	G	A	1818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=-0.326;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:45,46:0.51:91
chr4	20734176	rs6811933	C	G	1859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.79;ReadPosRankSum=-0.246;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:49,50:0.51:99
chr4	20736416	rs112956417	A	AAAAC	1672.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr4	20751278	rs2322688	A	G	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr4	20760644	rs57740160	A	G	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.497;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:67,54:0.45:121
chr4	20760683	rs17623902	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr4	20884482	rs57696441	G	GA,GAA	753.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.94;ReadPosRankSum=-1.172;SOR=1.445;set=HC	GT:AD:AF:DP	1/2:2,18,16:0.50,0.44:36
chr4	21305694	.	GAGAGAGAGAGAGAGAC	G	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=2.402;QD=12.59;ReadPosRankSum=-0.134;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr4	21698939	.	TAA	T	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.968;QD=12.17;ReadPosRankSum=-1.401;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr4	21764761	rs717531	C	T	5341.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:221,252:0.53:473
chr4	21950259	rs6448102	A	G	9972.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr4	22416133	rs7658234	C	G	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	22416195	rs13106386	C	G	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	22439914	rs6823735	A	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	22444251	rs374500461	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.033;QD=0.43;ReadPosRankSum=-0.126;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr4	22444692	rs10018144	C	T	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	22457478	rs16872669	C	T	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr4	22715639	rs1963996	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	22749783	.	GTA	G	238.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr4	22820504	rs358231	A	T	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	23815924	rs2970847	T	C	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:148,113:0.43:261
chr4	23822328	rs2932976	G	A	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:181,143:0.44:324
chr4	24550431	rs35768649	T	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr4	24801315	rs2536512	G	A	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:212,189:0.47:401
chr4	24801354	rs8192291	C	T	3936.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:164,174:0.51:338
chr4	24801949	rs2695232	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	24809884	rs1019229	T	C	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	25001439	rs7689760	T	C	4803.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:195,226:0.54:421
chr4	25001576	rs7665497	C	T	5503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.73;ReadPosRankSum=0.122;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:138,141:0.51:279
chr4	25001576	.	CTC	TTT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=24;MQ=59.97;NF=54;NR=76;PP=2944;QD=20;SC=CCTCAACATCCTCCCCATAGC;SbPval=0.52;Source=Platypus;TC=257;TCF=106;TCR=151;TR=130;WE=25001586;WS=25001566;set=Platypus	GT:AD:AF:DP	0/1:127,130:0.51:257
chr4	25001578	rs7665498	C	T	5503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.66;ReadPosRankSum=-0.278;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:138,142:0.51:280
chr4	25001632	rs7690185	T	A	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:81,71:0.47:152
chr4	25001685	rs7670138	A	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr4	25005023	rs2232029	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr4	25005193	rs2232028	G	A	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-2.375;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:111,122:0.52:233
chr4	25028472	rs34396934	A	G	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:193,201:0.51:394
chr4	25030312	rs10021870	G	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr4	25160732	rs34423002	T	TA	710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=7.370;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.581;QD=2.78;ReadPosRankSum=-0.843;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:178,78:0.30:256
chr4	25236017	rs313549	T	C	75.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.16;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	25253995	rs313567	C	T	14125.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr4	25262257	.	TATATATACAC	T	147	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=37;MMLQ=28;MQ=57.15;NF=0;NR=9;PP=147;QD=16.6666666667;SC=TATATATATATATATATACAC;SbPval=1.0;Source=Platypus;TC=10;TCF=1;TCR=9;TR=9;WE=25262274;WS=25262243;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr4	25315616	rs73252577	G	A	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=9.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.533;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:34,50:0.60:84
chr4	25315637	rs199972003	C	CT,CTT	1227.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.459;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-0.380;SOR=1.103;set=HC	GT:AD:AF:DP	1/2:17,33,40:0.37,0.44:90
chr4	25316815	rs12508686	T	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	25363901	rs315675	T	A	11356.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr4	25370962	rs315689	A	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	25382080	.	G	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.567;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:197,30:0.13:227
chr4	25382216	rs315676	C	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	25391584	rs186408	G	A	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	25393889	rs2292407	C	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:92,75:0.45:167
chr4	25394078	rs2292408	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr4	25395673	rs73254166	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr4	25395674	rs17605267	C	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr4	25396413	rs60735339	C	T	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:86,61:0.41:147
chr4	25404553	rs10023139	C	T	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	25408516	rs3214034	T	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:66,48:0.42:114
chr4	25408724	rs28616687	A	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr4	25408838	rs34811474	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr4	25415880	rs3816585	C	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr4	25417244	rs3816587	C	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	25419283	rs9174	T	C	11235.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr4	25674905	.	TCACA	T	1991.73	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	25674911	.	G	GAGGGA	2026.73	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	25674913	rs62409436	A	G	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	25678199	rs6448389	A	G	8232.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr4	25758580	rs4401441	G	A	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	25759109	rs11352729	CT	C	452.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=1.370;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:4,28:0.88:32
chr4	25767133	rs6823220	A	T	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	25767183	rs4697616	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	25769135	rs2290577	T	C	7970.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr4	25915648	rs2305669	G	A	4754.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:189,217:0.53:406
chr4	26097298	rs139788486	GAAGGAAGGAAGGA	G	1183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=1.901;QD=22.33;ReadPosRankSum=0.742;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr4	26122858	rs6825116	G	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr4	26274274	rs7680528	T	A	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:118,158:0.57:276
chr4	26322759	rs113697915	C	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr4	26364300	rs13116873	C	G	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=1.595;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:66,39:0.37:105
chr4	26387959	rs56122711	AT	A	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=2.240;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr4	26407681	rs3109839	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr4	26407729	rs6847065	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr4	26417068	.	G	GT	795.73	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr4	26417136	rs2270226	T	C	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=1.339;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:88,81:0.48:169
chr4	26431821	rs3214341	GA	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=-2.054;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	26483208	rs17846984	C	T	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr4	26483839	rs56270760	C	A	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:111,106:0.49:217
chr4	26483844	rs71610896	G	A	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:100,99:0.50:199
chr4	26491111	rs1800857	A	G	3684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-0.229;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:130,101:0.44:231
chr4	26491117	rs1800855	A	T	3613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=0.312;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:126,96:0.43:222
chr4	26585881	rs4692549	C	T	2991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.874;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:144,145:0.50:289
chr4	26615982	rs260954	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	26673761	rs9997999	T	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	26673787	rs7691219	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	26737063	rs33992685	C	CT	1110.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:15,63:0.81:78
chr4	26755690	rs192459890	G	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr4	26862546	rs5856957	CT	C	662.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.722;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:14,56:0.80:70
chr4	26862754	rs114264770	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr4	26862782	rs75058604	C	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr4	26959207	rs3792685	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr4	27004011	rs10028164	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	27004490	rs5856961	T	TA	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr4	27022800	rs10031905	A	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	27162341	rs17649944	C	G	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:66,77:0.54:143
chr4	28372227	rs16880550	A	G	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr4	28821172	.	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DP=330;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=0.597;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:270,48:0.15:318
chr4	30132766	rs34540632	ATG	A	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.223;QD=2.27;ReadPosRankSum=-3.061;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:128,32:0.20:160
chr4	30222333	.	CAT	C	333.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr4	30279716	rs73223753	T	C	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=0.287;QD=14.08;ReadPosRankSum=-1.155;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr4	30279719	rs190265896	A	G	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=0.250;QD=14.27;ReadPosRankSum=-0.968;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr4	30279742	rs199704978	T	C	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.786;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=0.080;QD=12.14;ReadPosRankSum=0.886;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr4	30279745	rs61794114	G	A	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-0.223;QD=21.68;ReadPosRankSum=0.859;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr4	30279763	rs201240061	C	A	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-0.189;QD=24.04;ReadPosRankSum=0.725;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:17,28:0.62:45
chr4	30480934	rs7655003	A	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr4	30481010	.	CAG	C	560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.456;QD=1.95;ReadPosRankSum=0.570;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:245,43:0.15:288
chr4	30725696	rs1047012	G	A	13808.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:2,500:1.00:502
chr4	30725987	rs977931	G	A	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr4	30732274	rs3756025	G	T	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	30976765	.	T	TTG	675.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=45.05;ReadPosRankSum=-1.207;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr4	31099209	.	C	T	21	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=2;MGOF=91;MMLQ=28;MQ=59.61;NF=1;NR=3;PP=21;QD=13.9428031368;SC=TCCAAATATACATATATATAT;SbPval=0.03;Source=Platypus;TC=15;TCF=12;TCR=3;TR=4;WE=31099217;WS=31099199;set=Platypus	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	31099260	rs58379331	A	C	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	31107644	rs36105849	A	AT	99.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.804;SOR=1.785;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr4	31107645	rs10691944	A	AAT,AT	573.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=6.767;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.20;ReadPosRankSum=-1.190;SOR=2.788;set=HC	GT:AD:AF:DP	1/2:1,11,7:0.58,0.37:19
chr4	31107765	rs4580617	G	C	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	31116254	rs34203962	AAC	A	143.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	31116375	rs10006845	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	31144054	rs77404368	G	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr4	36069805	rs7657166	G	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:85,60:0.41:145
chr4	36081878	rs4833069	C	T	13524.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr4	36109409	rs7688562	C	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	36121140	rs143366422	G	GT	389.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr4	36122737	rs4832795	A	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr4	36123024	rs1397423	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr4	36126393	rs2271331	G	A	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:65,68:0.51:133
chr4	36126696	rs3817165	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr4	36130099	rs6148397	T	TACACAC,TACACACACACACAC	2076.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=50;set=Intersection	GT:AF:DP	1/2:0.60,0.33:42
chr4	36130127	rs5009416	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr4	36130375	rs5857473	TA	T	4333.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:3,140:0.98:143
chr4	36130393	rs1397419	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:68,59:0.46:127
chr4	36148837	rs73225587	T	C	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:77,61:0.44:138
chr4	36149025	rs1567483	G	A	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	36149113	rs1567484	C	T	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	36160340	rs1546495	G	T	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	36160603	rs17457286	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr4	36162273	rs11431961	C	CA	707.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.571;QD=18.15;ReadPosRankSum=0.538;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr4	36162923	rs2271330	G	A	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	36168706	rs3055951	CAAAA	C	631.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr4	36211914	rs4394022	C	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	36212107	rs112385259	G	A	3480.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:148,162:0.52:310
chr4	36216180	.	ATAT	A	891.73	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr4	36258197	rs7686575	T	C	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=0.269;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:68,47:0.41:115
chr4	36261377	rs6833722	T	A	111.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr4	36283313	rs7695130	A	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr4	36285929	rs6824507	A	C	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:94,83:0.47:177
chr4	36292018	rs1995319	T	A	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:122,130:0.52:252
chr4	36310049	rs12507599	C	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:105,73:0.41:178
chr4	36317792	rs142166155	C	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr4	37243756	rs144889108	TA	T	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr4	37246639	rs892826	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr4	37247021	rs892825	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr4	37432416	rs2973217	A	C	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	37590570	rs2279994	G	A	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:197,197:0.50:394
chr4	37592128	rs2973275	G	A	3580.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:167,165:0.50:332
chr4	37592674	rs937941	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr4	37636341	rs11730085	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,63:0.46:136
chr4	37636750	rs2276943	T	G	2768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.999;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.283;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:121,118:0.49:239
chr4	37666991	rs6837020	T	G	14836.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.383;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr4	37666995	rs1221653	T	C	14684.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr4	37828175	rs2059484	T	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	37828186	rs2059483	C	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr4	37831850	rs2911907	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	37850312	rs35704131	TG	T	1899.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:87,64:0.42:151
chr4	37857106	rs6531590	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr4	37857166	rs6842360	A	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr4	37903669	rs2279028	A	G	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	37903756	rs2279027	T	C	6078.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	37904082	rs2279026	T	C	10737.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr4	37904228	rs11931763	T	A	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	37922307	rs2925957	G	C	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	37962186	rs6811863	G	C	14162.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr4	37962608	rs200376306	CAT	C	9009.73	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:266,235:0.47:501
chr4	38016395	rs10501	T	G	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:116,128:0.52:244
chr4	38022087	rs10015663	A	G	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr4	38023279	rs61731607	G	C	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr4	38023294	rs61731610	G	A	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr4	38053788	.	C	CTGTGTGTGTGTG	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.938;QD=6.94;ReadPosRankSum=0.778;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr4	38053825	rs73810093	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-3.965;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr4	38062233	rs1364953	T	A	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:134,128:0.49:262
chr4	38097478	rs10517469	G	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr4	38628540	rs168086	A	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr4	38628725	rs62294474	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr4	38774785	rs10776482	A	G	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:169,153:0.48:322
chr4	38774889	rs4129009	T	C	5246.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:239,248:0.51:487
chr4	38775040	rs10776483	A	G	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:127,121:0.49:248
chr4	38775639	rs11466658	G	A	4353.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:230,205:0.47:435
chr4	38776107	rs11096955	T	G	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	38776180	rs11096956	C	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:85,79:0.48:164
chr4	38776303	rs11466652	T	C	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,97:0.53:184
chr4	38776491	rs11096957	T	G	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	38777173	rs10856838	A	T	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:104,122:0.54:226
chr4	38777236	rs10856839	T	G	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr4	38798648	rs5743618	C	A	10953.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr4	38798935	rs5743614	C	T	9590.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.13;QD=29.42;SOR=1.753;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr4	38799539	rs3923647	T	A	5029.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:194,226:0.54:420
chr4	38799710	rs4833095	T	C	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	38800339	rs5743610	G	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr4	38829832	rs3775073	T	C	6933.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:280,326:0.54:606
chr4	38830012	rs3821985	G	C	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:66,85:0.56:151
chr4	38830350	rs5743810	A	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	38907021	.	TA	T	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=2.647;QD=2.46;ReadPosRankSum=0.056;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:52,22:0.30:74
chr4	38916465	rs4563504	A	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr4	38924230	rs12513149	A	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr4	38924275	rs12509328	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:68,36:0.35:104
chr4	38924330	rs10000037	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:104,67:0.39:171
chr4	38924358	rs12498685	A	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:114,82:0.42:196
chr4	38932922	rs2291493	C	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr4	38933726	rs4833106	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr4	38937372	rs2271031	T	C	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr4	38942697	rs11398065	C	CT	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.762;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:77,38:0.33:115
chr4	38944976	rs34903665	A	AT	1503.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr4	38990334	rs3821986	C	T	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	38995310	rs11721954	A	G	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:60,54:0.47:114
chr4	38995374	rs10212770	T	C	8133.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr4	39000305	rs11542133	A	G	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:120,100:0.45:220
chr4	39000569	rs73236699	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr4	39034066	rs56090217	TA	T	672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.032;QD=9.22;ReadPosRankSum=0.649;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:26,47:0.64:73
chr4	39034116	rs1430366	C	T	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=7.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.97;ReadPosRankSum=-0.053;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr4	39034119	rs111780747	T	TAA	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=9.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=1.756;SOR=3.293;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr4	39046586	rs111344840	CA	C	1327.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	39064126	rs2711942	G	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr4	39064162	rs2711941	A	C	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:86,95:0.52:181
chr4	39065091	rs2711940	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr4	39094738	rs2566149	G	A	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:136,148:0.52:284
chr4	39094954	rs2712007	G	C	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:117,96:0.45:213
chr4	39109399	rs12508577	A	G	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr4	39109428	rs2711939	T	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr4	39114929	rs3796510	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr4	39114945	rs3839126	A	AG	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.468;QD=5.84;ReadPosRankSum=-0.477;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr4	39116775	rs10026775	A	T	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:70,72:0.51:142
chr4	39116911	rs3733276	T	C	3738.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:165,184:0.53:349
chr4	39117103	rs3733277	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr4	39122577	rs3733274	A	G	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=1.907;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:71,50:0.41:121
chr4	39122697	rs3733275	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr4	39128101	rs7694760	A	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr4	39184297	rs148579854	AAG	A	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.568;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr4	39187521	rs111449236	TG	T	1176.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.324;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:48,81:0.63:129
chr4	39187522	rs6839511	G	T	229.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.051;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:101,28:0.22:129
chr4	39205365	rs1451817	C	T	11436.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr4	39207318	rs17584431	A	G	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:97,77:0.44:174
chr4	39216221	rs2167494	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr4	39217352	rs3733287	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr4	39226486	.	AT	A	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.133;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr4	39233719	rs113407055	T	TA	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.116;QD=2.33;ReadPosRankSum=-1.323;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:62,24:0.28:86
chr4	39233977	rs11729098	G	A	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr4	39242111	rs9998591	C	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr4	39257671	rs7664247	T	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-3.765;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr4	39257681	.	A	AGGAATAATT	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-3.752;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr4	39259190	rs11096987	A	G	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.553;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:30,34:0.53:64
chr4	39271541	rs3733280	A	G	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:104,114:0.52:218
chr4	39276623	rs11096989	A	AG	1442.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr4	39279671	rs56151655	C	CA	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-0.102;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:55,36:0.40:91
chr4	39279724	rs12648082	T	C	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:117,129:0.52:246
chr4	39279907	rs2276888	A	G	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:187,171:0.48:358
chr4	39297200	rs2306597	G	A	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:90,99:0.52:189
chr4	39301605	rs2066788	G	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr4	39302029	rs2066786	T	C	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:55,87:0.61:142
chr4	39318706	rs2066790	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr4	39329102	rs11096992	G	A	1032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=0.586;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:65,54:0.45:119
chr4	39343940	rs2306596	C	A	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:180,137:0.43:317
chr4	39352910	rs11729890	T	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr4	39353122	rs4975007	C	T	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	39368083	rs3736168	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr4	39413650	rs58015370	A	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.10;ReadPosRankSum=-0.000;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	39448529	rs17618244	G	A	6097.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:260,279:0.52:539
chr4	39448542	rs7685429	C	G	14383.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr4	39450229	rs4975017	C	A	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:136,139:0.51:275
chr4	39456392	rs1463478	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	39457870	rs3216720	T	TG	3830.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	39458051	rs2125313	A	G	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	39459724	rs2687958	T	C	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	39460490	rs2276890	C	G	4392.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:222,202:0.48:424
chr4	39460797	rs2687959	G	A	2522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=1.968;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:102,116:0.53:218
chr4	39472842	rs2125314	T	A	3072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=8.28;ReadPosRankSum=0.443;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:212,159:0.43:371
chr4	39472946	rs67611743	CT	C	966.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=2.131;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:82,97:0.54:179
chr4	39478832	rs1048140	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr4	39478946	rs11934814	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr4	39501647	rs58175625	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.65;ReadPosRankSum=0.168;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	39501722	rs60656244	CAAA	C,CAA	1182.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=0.411;QD=19.71;ReadPosRankSum=-0.396;SOR=0.586;set=HC	GT:AD:AF:DP	1/2:4,33,23:0.55,0.38:60
chr4	39505927	.	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.676;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.318;QD=0.41;ReadPosRankSum=0.499;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:134,28:0.17:162
chr4	39510122	rs11735116	G	T	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr4	39511530	rs71645104	T	TA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=4.673;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.639;QD=1.22;ReadPosRankSum=-1.392;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:154,41:0.21:195
chr4	39528752	rs4975020	G	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.033;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr4	39606533	rs73240622	A	T	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr4	39700173	rs1055582	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr4	39747536	rs302931	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	39757480	rs11389468	A	AT	2131.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	39776396	rs191336963	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:63,52:0.45:115
chr4	39827804	rs374518376	GTT	G	2552.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.823;MLEAC=2;MLEAF=1.000;MQ=60.52;MQRankSum=0.306;QD=24.08;ReadPosRankSum=-1.522;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:8,98:0.92:106
chr4	39851058	rs10664738	C	CA,CAA	1609.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=7.309;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.445;QD=13.30;ReadPosRankSum=0.672;SOR=1.946;set=HC	GT:AD:AF:DP	1/2:24,46,51:0.38,0.42:121
chr4	39864448	rs4547806	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	39871117	rs34039605	G	GA	1125.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr4	39891783	.	T	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=15.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.565;SOR=4.558;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr4	39900183	.	G	GA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.856;QD=1.20;ReadPosRankSum=1.198;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:71,18:0.20:89
chr4	39910172	rs35396203	GA	G	3651.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	39915454	rs11725674	G	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	39918636	rs10001599	A	T	956.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.833;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=-0.436;SOR=0.353;set=HC	GT:AD:AF:DP	1/1:6,60:0.91:66
chr4	39921942	rs28449663	A	G	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	39924372	rs373105119	T	TA	432.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.707;SOR=1.261;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr4	39928379	.	G	GT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.370;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=9.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.983;SOR=2.777;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr4	39978267	.	G	C	399.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr4	40044833	rs28550618	C	A	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:70,96:0.58:166
chr4	40045340	rs17439810	G	C	7141.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:287,321:0.53:608
chr4	40045687	rs17585937	C	T	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:126,96:0.43:222
chr4	40045727	rs1704151	T	G	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	40108750	rs1704154	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr4	40121562	rs794001	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr4	40125631	rs73229752	C	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr4	40337523	rs56241474	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:62,69:0.53:131
chr4	40337566	rs10015231	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr4	40337908	rs10022491	T	C	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	40337944	rs56159866	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr4	40339224	rs368167486	T	C	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr4	40339535	.	G	T	319.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr4	40356041	rs55633891	C	T	3160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=0.209;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:185,154:0.45:339
chr4	40356422	rs10009228	A	G	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:124,138:0.53:262
chr4	40428010	rs278981	T	C	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	40434976	rs77609536	T	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.70;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	40435004	rs4861002	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	40438576	rs2307046	A	G	12174.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:2,450:1.00:452
chr4	40438931	rs12503550	T	C	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	40440215	rs2291580	T	C	20474.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,729:1.00:729
chr4	40440750	rs375207125	T	G	7571.77	.	AC=1;AF=0.500;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	0/1:446,378:0.46:824
chr4	40440854	rs1052153	G	C	7763.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr4	40763106	rs149238464	T	TAATGG	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr4	40777961	rs2465571	C	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr4	40778146	rs2465570	C	T	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	40778162	rs2437323	T	G	4231.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.114;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.45;ReadPosRankSum=1.877;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:1,159:0.99:160
chr4	40788210	rs2437314	T	C	3148.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:149,149:0.50:298
chr4	40788544	rs2953325	A	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	40810663	rs4861066	A	G	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:210,195:0.48:405
chr4	40810747	rs2261167	A	G	12634.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr4	40810978	rs882733	G	A	3061.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:126,132:0.51:258
chr4	40832363	rs2437343	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	40844199	rs1865605	T	C	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	40937219	.	GAA	G,GA	1524.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.48;MQRankSum=0.481;QD=17.94;ReadPosRankSum=1.256;SOR=0.730;set=HC	GT:AD:AF:DP	1/2:4,19,62:0.22,0.73:85
chr4	40946750	rs4327523	A	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	41015899	rs4861358	C	T	10312.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr4	41015942	rs34875102	A	G	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:134,126:0.48:260
chr4	41259149	rs11556273	T	C	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:77,70:0.48:147
chr4	41259162	rs11556272	C	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:68,65:0.49:133
chr4	41526235	rs78694876	G	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr4	41526250	rs10014221	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr4	41526503	rs4266323	C	T	5521.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:263,263:0.50:526
chr4	41607754	rs11943304	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	41611575	rs1105886	A	G	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr4	41615249	rs66955637	A	AT	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	41615690	rs13146318	T	A	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	41629036	rs5857808	G	GGTGT	1553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.13;ReadPosRankSum=0.615;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,38:0.88:43
chr4	41646651	rs2304647	G	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:69,51:0.42:120
chr4	41646758	rs13101981	T	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr4	41652293	rs2289338	C	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	41663621	rs17528897	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr4	41664786	rs75228450	A	T	5608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.842;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.993;QD=19.68;ReadPosRankSum=1.447;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:141,144:0.51:285
chr4	41664803	rs142890171	CCTTCTGTACG	C	6436.73	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:210,170:0.45:380
chr4	41668465	rs17444537	C	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:68,46:0.40:114
chr4	41672759	rs2289342	C	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:113,84:0.43:197
chr4	41672989	rs2289343	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,38:0.45:85
chr4	41673604	rs11734372	T	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr4	41678566	rs2304650	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:71,75:0.51:146
chr4	41683212	rs6816179	A	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr4	41684580	rs61271673	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;MQ=60.45;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr4	41686359	rs191392173	G	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr4	41687911	rs2304652	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr4	41689974	rs1371297	A	G	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:72,77:0.52:149
chr4	41984118	rs2660320	C	T	17272.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr4	41985101	rs2660332	A	G	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	41992677	rs2581434	C	G	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	42003671	rs1047626	A	G	6798.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	42003835	rs2581453	C	G	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	42020142	rs2581423	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	42020347	rs2581422	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	42022464	rs15857	C	A	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	42024982	rs13107768	A	G	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	42025049	rs3213766	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	42025207	rs3213767	A	G	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	42040947	rs12641900	C	T	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	42051257	rs7684837	A	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	42051608	rs4241696	T	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	42065269	rs3804190	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	42069029	rs12643893	T	C	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	42069331	rs11409064	C	CA	1172.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	42127762	.	G	GT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.333;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.976;QD=0.67;ReadPosRankSum=1.939;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr4	42402992	rs66671329	A	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:70,60:0.46:130
chr4	42403561	rs55934419	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr4	42448789	rs35005173	T	TA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.000;QD=5.86;ReadPosRankSum=0.010;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr4	42466641	rs12647640	C	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr4	42557859	rs145505019	C	CTAAA	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr4	42571074	rs6845603	A	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.55;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	42576472	rs13148015	G	A	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:72,78:0.52:150
chr4	42576522	rs2290869	C	T	3107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.062;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:134,148:0.52:282
chr4	42577517	rs2290868	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr4	42582047	rs6447171	A	C	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	42592935	rs3833615	C	CA	854.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.067;QD=7.24;ReadPosRankSum=-0.346;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:61,57:0.48:118
chr4	42602606	rs6819419	A	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr4	42626659	rs11306052	GA	G	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.712;QD=7.87;ReadPosRankSum=0.128;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr4	42627805	rs1460358	A	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	42639186	rs898500	A	G	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=0.587;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:110,126:0.53:236
chr4	42659028	rs12503784	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr4	42895308	rs78136490	G	A	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,65:0.61:106
chr4	42895423	rs57655409	C	T	3491.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:165,165:0.50:330
chr4	42895715	rs41493449	A	G	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:101,94:0.48:195
chr4	42965159	rs10213360	A	C	4730.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:198,235:0.54:433
chr4	43032612	rs4861050	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr4	44626641	rs60959366	A	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr4	44626806	rs17600797	C	A	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:227,122:0.35:349
chr4	44626846	rs6838327	G	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:205,111:0.35:316
chr4	44631587	rs6813809	A	G	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr4	44651968	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.151;QD=0.78;ReadPosRankSum=-0.234;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr4	44652187	rs1113098	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr4	44682465	rs6447368	T	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,50:0.49:103
chr4	44684455	rs13117025	C	T	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	44684507	rs9291245	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	44685224	rs112232487	T	TA	1562.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	44685225	rs58659516	T	A	1571.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	44690320	rs1491304	A	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	44691795	rs11373408	T	TA	2520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-1.582;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:46,152:0.77:198
chr4	44696538	rs12641137	C	G	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	44699484	rs6851576	T	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr4	44699506	rs6821295	C	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-2.084;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:55,36:0.40:91
chr4	44700453	rs1547526	G	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr4	44705125	rs34864228	T	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,58:0.50:117
chr4	44709695	rs1491302	C	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	44712908	rs3749582	T	C	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:65,95:0.59:160
chr4	44713235	rs1124828	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr4	44719048	rs1873522	A	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr4	44720248	rs3792705	T	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr4	46086060	rs976156	T	C	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-2.149;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:51,44:0.46:95
chr4	46263862	rs35496835	A	AG	2083.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:74,56:0.43:130
chr4	46263864	rs10938435	T	A	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:79,56:0.41:135
chr4	46314593	rs279858	T	C	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:69,76:0.52:145
chr4	46390865	rs11503014	C	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr4	46967279	rs2055943	C	A	11228.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr4	46994972	rs34464680	G	GA	1012.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.044;QD=13.87;ReadPosRankSum=-0.812;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:13,60:0.82:73
chr4	46995366	rs2229940	G	T	7182.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	47033772	rs72259536	GCT	G	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.654;QD=0.84;ReadPosRankSum=-0.050;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:164,24:0.13:188
chr4	47034104	rs6847977	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	47034145	rs72109821	G	GCA	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-1.115;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr4	47322190	rs4482737	T	C	8272.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr4	47408709	rs6289	A	G	8745.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr4	47465847	rs13115740	A	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr4	47525009	rs5858076	T	A	3679.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.47;SOR=1.705;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	47538360	rs13152689	T	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	47539070	rs115875306	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr4	47560859	rs79884646	A	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	47578971	rs16851681	G	A	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:265,206:0.44:471
chr4	47582387	rs2351791	A	C	31860.77	.	AC=2;AF=1.00;AN=2;DB;DP=1193;set=Intersection	GT:AD:AF:DP	1/1:2,1187:1.00:1189
chr4	47589203	rs1316874	G	A	5271.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:224,250:0.53:474
chr4	47589299	rs2351790	C	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:67,58:0.46:125
chr4	47593532	rs12641970	G	A	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr4	47655730	rs3805392	A	G	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr4	47666981	rs17462881	A	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-0.361;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr4	47667064	rs11934749	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	47679928	rs2271036	T	C	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,91:0.48:189
chr4	47680085	rs2271037	T	G	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:67,88:0.57:155
chr4	47682174	rs10517195	A	G	6879.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:394,350:0.47:744
chr4	47746602	rs372683178	TA	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.441;SOR=1.228;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr4	47901088	rs34323060	C	T	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:111,117:0.51:228
chr4	47916233	.	G	GA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.066;QD=0.74;ReadPosRankSum=-0.077;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr4	47916346	rs6826122	C	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	47944029	rs11387704	C	CA	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.964;QD=2.26;ReadPosRankSum=-1.186;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:113,46:0.29:159
chr4	47954624	rs76537883	C	T	2165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=5.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.218;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:81,102:0.56:183
chr4	47973185	.	T	TTG	54.73	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr4	48018761	rs77335151	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr4	48069696	rs2230594	G	C	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:173,156:0.47:329
chr4	48069725	rs9996535	G	A	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:128,106:0.45:234
chr4	48073501	rs906486	G	T	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:199,148:0.43:347
chr4	48076091	rs55781011	G	A	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:135,115:0.46:250
chr4	48078593	rs6850108	C	A	2010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.534;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:131,102:0.44:233
chr4	48081896	rs11358014	CA	C	836.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.755;QD=4.73;ReadPosRankSum=-0.878;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:111,66:0.37:177
chr4	48082095	rs11724347	C	T	5166.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:254,241:0.49:495
chr4	48082208	rs2352590	T	C	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	48088419	rs6833403	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:109,93:0.46:202
chr4	48088446	rs6858664	A	G	7920.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr4	48107096	rs6825925	T	A	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	48115264	rs7658300	C	T	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:168,160:0.49:328
chr4	48139565	rs2661529	C	A	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	48143201	rs17470892	T	C	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	48147309	rs17574371	T	C	11010.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr4	48147612	rs2661547	T	G	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	48148435	rs3749503	G	A	9817.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr4	48158524	rs882715	G	A	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	48165888	rs139950746	CTTA	C	1268.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	48169769	rs7689953	A	G	20226.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:0,745:1.00:745
chr4	48170669	rs2243840	A	G	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	48492434	rs10008444	G	C	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr4	48492769	rs74929644	A	T	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	48493237	rs79858408	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	48493388	rs7340880	T	C	112.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	48516970	rs7434721	C	T	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	48517136	.	C	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.631;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:185,45:0.20:230
chr4	48529683	rs11356838	TA	T	1379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.504;QD=12.00;ReadPosRankSum=0.436;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,97:0.84:115
chr4	48529733	rs4695385	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	48533148	rs6855022	C	A	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	48537603	rs3838234	T	TACACAC	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr4	48537633	rs3838233	T	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr4	48541973	rs17656010	A	G	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	48558882	rs4694898	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	48573028	rs1507865	T	C	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	48577121	rs28558226	C	T	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr4	48582836	rs4695390	A	T	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	48582909	rs4695391	G	A	6072.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	48583323	rs76601306	C	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	48596195	rs78630567	TTATAAG	T	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	48607938	rs2940319	T	C	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	48610961	rs776604	T	C	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	48611153	rs776603	A	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	48611639	rs5858122	G	GA	487.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.760;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.504;QD=16.26;ReadPosRankSum=0.044;SOR=0.199;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr4	48611929	rs776602	A	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	48625204	.	T	TA	360	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=8;HapScore=4;MGOF=6;MMLQ=25;MQ=60.0;NF=0;NR=6;PP=360;QD=62.8333333333;SC=CTCCTATGATTAAAAAAAACA;SbPval=1.0;Source=Platypus;TC=28;TCF=0;TCR=28;TR=6;WE=48625221;WS=48625194;set=Platypus	GT:AD:AF:DP	1/1:22,6:0.21:28
chr4	48625212	.	AC	A	253	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=7;HapScore=4;MGOF=6;MMLQ=28;MQ=60.0;NF=0;NR=6;PP=253;QD=45.0;SC=ATTAAAAAAAACAAACATTAA;SbPval=1.0;Source=Platypus;TC=27;TCF=0;TCR=27;TR=6;WE=48625221;WS=48625194;set=Platypus	GT:AD:AF:DP	1/1:21,6:0.22:27
chr4	48625213	rs776579	C	A	787.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.803;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=-0.030;SOR=0.240;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr4	48636595	rs796555	C	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	48655635	rs776580	T	A	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	48834896	rs4694906	C	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr4	48851937	rs3761729	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:78,88:0.53:166
chr4	48988450	rs3747690	C	A	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:108,99:0.48:207
chr4	48988705	rs2572344	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr4	48990476	rs10537617	CT	C	1983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.745;QD=7.29;ReadPosRankSum=0.366;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:120,152:0.56:272
chr4	48994138	rs28678278	G	T	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:94,79:0.46:173
chr4	49000684	rs142006288	T	G	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:69,86:0.55:155
chr4	49063872	rs1051447	C	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,54:0.56:96
chr4	52709970	.	TG	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.59;ReadPosRankSum=0.545;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	52714354	rs10673605	A	ATTTC	2001.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr4	52714511	rs6851073	C	G	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr4	52744145	rs3215145	T	TAGAC	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr4	52752812	rs2271046	A	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr4	52753118	rs7665231	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr4	52765720	rs2271045	T	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr4	52896050	rs225170	A	G	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:93,77:0.45:170
chr4	52927113	rs999634	C	A	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:93,97:0.51:190
chr4	52927229	rs784944	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr4	52928352	rs34989037	GT	G	665.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.581;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:17,58:0.77:75
chr4	52938243	rs3860707	T	C	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.005;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:108,99:0.48:207
chr4	52942779	rs55839120	G	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr4	52943227	rs145464050	T	C	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:139,119:0.46:258
chr4	52945207	rs12641673	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr4	52945799	rs7689145	C	T	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	52946161	rs7657148	A	G	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	52950983	.	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=5.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.609;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:147,34:0.19:181
chr4	52951213	rs147423128	CTT	C,CT	2419.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.943;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.476;QD=18.06;ReadPosRankSum=-0.120;SOR=0.390;set=HC	GT:AD:AF:DP	1/2:11,80,43:0.60,0.32:134
chr4	52960908	rs3214049	T	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:95,94:0.50:189
chr4	53463763	rs7676586	G	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr4	53492522	rs73248669	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr4	53495992	rs12509591	T	C	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:107,97:0.48:204
chr4	53610272	rs61731317	C	T	6336.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:310,304:0.50:614
chr4	53611668	rs3733504	T	C	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:161,124:0.44:285
chr4	53611701	rs3733503	G	C	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:127,88:0.41:215
chr4	53786861	rs3833975	TAGA	T	2151.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr4	53787126	rs33967666	G	GT	230.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr4	53814492	rs2930105	C	T	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.620;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.45;ReadPosRankSum=-1.927;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:46,55:0.54:101
chr4	53814500	rs2930106	C	T	2436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.216;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.49;ReadPosRankSum=-1.532;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:56,69:0.55:125
chr4	53814878	rs167293	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr4	53822307	rs301093	A	G	5809.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:255,258:0.50:513
chr4	54011424	rs4864727	C	T	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr4	54011526	rs7675987	A	G	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:272,205:0.43:477
chr4	54218736	rs75757991	G	A	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr4	54245476	rs1471596	A	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	54250189	rs10012853	T	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	54256167	rs9994692	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr4	54280705	.	GAA	G,GA	1063.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.341;QD=14.37;ReadPosRankSum=2.316;SOR=0.641;set=HC	GT:AD:AF:DP	1/2:12,25,37:0.34,0.50:74
chr4	54310188	rs11722866	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	54310281	rs11723755	T	G	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr4	54310340	rs59279367	TA	T	1504.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	54325444	rs34707349	C	CT	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.280;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr4	54327235	rs3811785	T	C	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	54327584	rs3765158	A	G	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	54347946	rs138151311	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:117,99:0.46:216
chr4	54362150	rs6836800	G	A	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr4	54373464	rs10021772	C	T	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr4	54423948	rs59900244	A	ATTCCTCT	1556.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:56,40:0.42:96
chr4	54852693	rs149656971	CTTTTATTTTATTTTATTTTATTTTA	C,CTTTTATTTTATTTTATTTTA	920.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/2:0.67,0.33:24
chr4	54876121	rs145864126	T	TA,TAA	184.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=143;set=Intersection	GT:AF:DP	0/1:0.25:133
chr4	54876132	rs4437313	C	A	2745.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=4.088;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.829;QD=19.75;ReadPosRankSum=-0.984;SOR=0.295;set=HC	GT:AD:AF:DP	1/1:16,123:0.88:139
chr4	54966667	rs3194383	C	T	8453.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:383,380:0.50:763
chr4	54966830	rs13144341	G	A	11882.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr4	54966919	rs1132998	T	C	6175.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:248,276:0.53:524
chr4	54967214	rs6554148	C	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,49:0.45:110
chr4	54967709	rs2278142	C	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr4	55131001	.	T	TA	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=3.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.975;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:52,23:0.31:75
chr4	55141055	rs1873778	A	G	13091.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr4	55146406	rs6148442	T	TTGTAGGTCCCCCAG	2368.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	55151711	rs2412559	C	A	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	55151958	rs3830355	T	TA	3960.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	55152284	rs4864872	T	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	55153837	rs7695657	A	G	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr4	55156380	rs4864506	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	55156400	rs2276948	A	G	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	55161254	rs3733540	C	T	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	55161391	rs7685117	T	C	6911.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	55524304	rs999020	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:153,114:0.43:267
chr4	55598211	.	AT	A	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.945;QD=5.10;ReadPosRankSum=-2.529;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr4	55599436	rs1008658	T	C	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	55602765	rs3733542	G	C	3322.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:170,160:0.48:330
chr4	55946081	rs4421048	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	55948108	rs2412617	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	55955232	rs1531289	T	C	5599.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	55961159	rs2219471	T	C	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	55962545	rs3214870	T	TG	11346.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr4	55964101	rs6838752	T	C	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	55964565	rs3816584	A	G	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	55968778	.	T	C	698.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr4	55972974	rs1870377	T	A	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	55976947	rs5858314	T	TA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=2.176;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr4	55980239	rs7692791	C	T	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:105,89:0.46:194
chr4	56235931	rs819268	C	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr4	56262374	rs1128141	A	G	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.732;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	56278137	rs146894923	TTTTCCTTGTGTATCC	T	484.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	56290496	rs6828454	C	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	56290558	rs11732723	C	T	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	56290573	rs6810483	T	C	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:94,73:0.44:167
chr4	56291479	rs7677952	C	T	7299.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=27.76;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	56291528	rs7660517	T	C	10351.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr4	56291620	rs35154686	CAA	C	3862.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:121,103:0.46:224
chr4	56301675	rs35793438	T	G	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:132,139:0.51:271
chr4	56309992	rs3736544	A	G	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	56314759	rs146390682	GCA	G	708.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.69;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	56314761	.	A	G	755	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=2;HapScore=2;MGOF=16;MMLQ=24;MQ=58.65;NF=14;NR=2;PP=755;QD=49.3607007842;SC=GCGCGCGCGCACGCGCGCGTG;SbPval=0.65;Source=Platypus;TC=22;TCF=19;TCR=3;TR=16;WE=56314791;WS=56314747;set=Platypus	GT:AD:AF:DP	1/1:6,16:0.73:22
chr4	56314764	.	CGCGCGTGTGTGTGT	C	1238	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=24;MQ=59.14;NF=18;NR=3;PP=1238;QD=60.0476190476;SC=CGCGCGCACGCGCGCGTGTGT;SbPval=0.55;Source=Platypus;TC=22;TCF=19;TCR=3;TR=21;WE=56314791;WS=56314747;set=Platypus	GT:AD:AF:DP	0/1:1,21:0.95:22
chr4	56314766	.	CGCGTGTGTGTGTGTGTGT	C	292	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=33;MMLQ=24;MQ=59.17;NF=17;NR=3;PP=292;QD=15.75;SC=CGCGCACGCGCGCGTGTGTGT;SbPval=0.49;Source=Platypus;TC=23;TCF=20;TCR=3;TR=20;WE=56314791;WS=56314747;set=Platypus	GT:AD:AF:DP	1/0:3,20:0.87:23
chr4	56314768	.	CGTGTGTGTGTGTGTGT	C	547.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=-2.789;QD=23.81;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr4	56315085	rs74643067	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:74,75:0.50:149
chr4	56319088	rs4864996	A	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr4	56319105	rs2412647	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	56319395	rs79210836	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr4	56322244	rs10529254	TG	T	738.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.62;ReadPosRankSum=-0.578;SOR=0.328;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr4	56325365	rs34897046	G	C	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,78:0.57:136
chr4	56329773	rs1522112	T	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	56337041	rs3805151	T	C	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	56342326	rs9312661	G	A	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	56423002	rs71194590	G	GT	248.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	56428820	rs2279458	C	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	56447146	rs34437483	GA	G	508.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	56458332	rs111330552	A	T	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:134,125:0.48:259
chr4	56458400	rs62310884	A	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr4	56465271	rs73236157	A	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr4	56465418	rs1387198	T	C	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	56466876	rs11727729	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr4	56466914	rs11722645	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	56471551	rs3805382	A	G	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:190,127:0.40:317
chr4	56475338	rs3805383	G	A	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:227,226:0.50:453
chr4	56475431	rs73236160	A	G	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:131,129:0.50:260
chr4	56496727	rs55665531	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr4	56502094	rs35772728	G	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.55;ReadPosRankSum=0.185;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr4	56502304	rs35771241	G	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr4	56697597	rs6848009	T	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr4	56726839	rs11734942	T	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr4	56734701	rs3213948	C	T	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	56736773	rs77829116	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr4	56736794	rs150749988	T	TTTTG	741.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr4	56737900	rs73238379	T	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr4	56738887	rs75684348	A	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr4	56763170	rs10014018	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	57167280	rs13124016	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr4	57167324	rs74499702	AT	A	668.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr4	57167507	rs58767323	C	G	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:259,137:0.35:396
chr4	57176710	rs13123803	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr4	57176955	.	T	TC	2275	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=9;HapScore=2;MGOF=20;MMLQ=22;MQ=59.24;NF=3;NR=156;PP=2275;QD=14.3962264151;SC=ACTTTCATCTTCCCCCCCCCT;SbPval=0.99;Source=Platypus;TC=304;TCF=18;TCR=286;TR=159;WE=57176963;WS=57176945;set=Platypus	GT:AD:AF:DP	1/0:145,159:0.52:304
chr4	57176964	rs371414283	CT	C	1091.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.058;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:87,93:0.52:180
chr4	57176966	rs60121364	T	C	263.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.094;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=9.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.870;SOR=2.738;set=HC	GT:AD:AF:DP	0/1:150,53:0.26:203
chr4	57180473	rs6823339	C	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr4	57180576	rs138358443	C	CGGAGCGGAGGGAGCGGAG	659.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.83;ReadPosRankSum=0.350;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr4	57180616	rs11723379	G	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.825;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr4	57181632	rs7672073	G	C	12085.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr4	57182901	rs73159954	A	G	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr4	57189498	rs2292985	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,40:0.45:88
chr4	57190356	rs7695701	G	A	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:137,165:0.55:302
chr4	57193762	rs6826795	G	A	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	57194329	rs11733474	G	T	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr4	57194460	rs6811153	A	G	3659.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:194,184:0.49:378
chr4	57194525	rs6834736	C	G	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:232,221:0.49:453
chr4	57208955	rs9996468	A	T	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.01;SOR=3.342;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	57215677	rs3796544	G	A	6870.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:294,318:0.52:612
chr4	57215969	rs61978622	C	T	4883.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:261,236:0.47:497
chr4	57217340	.	T	C	24	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=24;QD=29.3856062736;SC=TAGTAGAGAATCTAACCTTCA;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=2;WE=57217348;WS=57217336;set=Platypus	GT:AD:AF:DP	1/0:5,2:0.29:7
chr4	57219523	rs6554347	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr4	57219592	rs6554348	G	A	1551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-1.455;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:69,77:0.53:146
chr4	57237683	rs6554354	G	A	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:203,181:0.47:384
chr4	57248577	rs76949390	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	57248856	rs77837182	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr4	57261372	rs34605681	G	GA	804.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.330;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.202;QD=5.44;ReadPosRankSum=-0.182;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:87,61:0.41:148
chr4	57261840	rs3036882	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-1.437;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr4	57269363	rs35136233	TA	T	5037.73	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:146,172:0.54:318
chr4	57269591	rs34121369	T	TA	2571.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:78,99:0.56:177
chr4	57269646	rs112538106	A	AAAAG	4129.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	57270197	rs7661712	T	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	57273840	rs11538098	C	G	6497.77	.	AC=1;AF=0.500;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	0/1:504,349:0.41:853
chr4	57276619	rs2139512	G	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	57276739	rs2176785	G	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr4	57312387	rs6816268	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:99,77:0.44:176
chr4	57325476	rs58975286	A	G	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.154;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:58,59:0.50:117
chr4	57333822	rs12513091	G	T	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:135,130:0.49:265
chr4	57336054	rs33985780	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.701;QD=2.51;ReadPosRankSum=0.938;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr4	57338188	rs4340842	A	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr4	57340109	rs4615235	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr4	57340592	rs11610	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr4	57356972	rs17086883	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr4	57368200	rs10051	T	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr4	57425443	rs7677956	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	57425520	rs76480778	A	AT	1990.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:4,88:0.96:92
chr4	57458942	rs6858341	C	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr4	57678103	.	C	CTT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.58;ReadPosRankSum=2.697;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr4	57686821	rs3733303	T	A	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-0.205;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:46,30:0.39:76
chr4	57785786	rs10866440	A	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.90;ReadPosRankSum=-0.754;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr4	57793751	rs1105434	G	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr4	57796900	rs2228991	G	A	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:107,89:0.45:196
chr4	57797414	rs3796529	C	T	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:131,145:0.53:276
chr4	57798174	rs3796528	C	G	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:141,195:0.58:336
chr4	57798189	rs2227901	G	A	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:201,149:0.43:350
chr4	57830501	rs9996331	G	A	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr4	57830663	rs17087307	T	C	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:156,157:0.50:313
chr4	57839280	rs57265257	A	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:66,65:0.50:131
chr4	57843295	rs3733306	C	A	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr4	57843320	rs4865167	A	G	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	57857188	rs3733309	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr4	57861117	rs1713951	G	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	57861358	rs2293175	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr4	57871748	rs71657247	C	CTT	1048.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.995;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=3.007;QD=9.53;ReadPosRankSum=0.639;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:61,49:0.45:110
chr4	57883175	rs1718866	G	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	57889332	rs1718862	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	57889677	rs1056364	C	T	8082.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr4	57899602	rs2271808	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr4	57976487	rs11573021	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr4	62382943	rs335311	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr4	62383315	rs335312	G	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr4	62445190	rs73215849	G	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr4	62449316	rs3075153	GTA	G	2437.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,65:0.48:135
chr4	62542879	rs1391319	G	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	62758251	rs7691112	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	62775479	.	ATG	A,ATGTGTGTG	625.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;QD=25.03;SOR=3.611;set=HC	GT:AD:AF:DP	1/2:0,20,5:0.80,0.20:25
chr4	62775485	rs201167151	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.650;QD=3.62;ReadPosRankSum=2.040;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr4	62778315	rs12503398	A	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr4	62800554	rs2305339	G	A	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=8.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.090;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:83,68:0.45:151
chr4	62800728	rs734644	T	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr4	62845388	rs1397547	G	C	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr4	62845490	rs1397548	A	G	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:270,214:0.44:484
chr4	62929182	.	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=1.323;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:118,27:0.19:145
chr4	65142710	rs1483713	C	T	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	65142835	rs1483712	G	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	65145955	rs1483711	T	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	65145966	rs5858871	T	TAA	972.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	65146700	rs10012755	A	G	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	65146711	rs1483709	T	C	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	65147404	rs10001161	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	65165580	rs142653581	T	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.713;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.140;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr4	65165661	rs11935568	G	A	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	65165849	rs13139627	G	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	65165909	rs13121693	T	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr4	65180308	rs35642943	GGTGTGTGTGTGT	G	674.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.880;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=1.045;QD=10.88;ReadPosRankSum=0.899;SOR=1.311;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr4	65180309	.	GT	G	1232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.813;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.047;QD=20.21;ReadPosRankSum=-0.774;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:22,39:0.64:61
chr4	65180311	.	GTGTGTGT	G	999.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.261;QD=16.94;ReadPosRankSum=-0.895;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:27,32:0.54:59
chr4	65240750	rs6551826	T	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	65240805	rs6551827	A	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.80;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	65240805	.	ACA	TCA,TCT	99	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=8;MMLQ=26;MQ=60.0;NF=9,4;NR=2,2;PP=99,31;QD=12.1610193225;SC=ATACACTCTAACATATATTGC;SbPval=0.61;Source=Platypus;TC=11;TCF=9;TCR=2;TR=11,6;WE=65240815;WS=65240795;set=Platypus	GT:AF:DP	0/1:1.00:11
chr4	65240807	rs62408524	A	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.65;ReadPosRankSum=0.923;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	65241100	rs13117957	T	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	66189755	rs77062137	T	C	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr4	66214043	rs2290254	G	A	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr4	66218728	rs3792649	C	T	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:71,99:0.58:170
chr4	66218917	rs139336386	G	GTA	856.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr4	66218980	rs5858955	G	GAAAT	513.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr4	66286088	rs6551921	G	A	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	66286100	rs6551922	T	C	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	66286414	rs6551923	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	66468046	rs5858973	TA	T	807.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr4	66509085	rs33932471	T	G	4228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.408;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:162,202:0.55:364
chr4	66535284	rs55860557	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr4	67142620	rs73239138	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr4	68214260	rs7659344	C	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.16;MQRankSum=-1.465;QD=10.82;ReadPosRankSum=-0.328;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	68214270	.	G	GAGGAAGGAAGGAAGGAAGGAAGGA	691.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.16;QD=76.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	68357814	rs1497430	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr4	68358331	rs2254659	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	68359499	rs41278557	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr4	68360955	rs2646282	A	G	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	68374597	rs1056789	C	T	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:104,119:0.53:223
chr4	68376708	rs190255	T	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:117,98:0.46:215
chr4	68380215	rs11250	G	A	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:80,69:0.46:149
chr4	68384008	rs355510	C	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	68384861	rs355507	G	T	174.28	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr4	68396525	rs355477	G	C	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:64,78:0.55:142
chr4	68406626	rs3836713	TATTA	T	2863.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:92,76:0.45:168
chr4	68406882	rs3775861	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr4	68410009	rs17625547	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.84;ReadPosRankSum=1.812;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	68416393	rs11436062	T	TA	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.001;QD=4.18;ReadPosRankSum=-1.919;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr4	68416639	.	GTTGTTTTGTTTTGTT	G	2992	.	AC=2;AF=1.00;AN=2;BRF=0.05;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=22;MQ=60.0;NF=0;NR=12;PP=2992;QD=20;SC=AAAAGTAAGAGTTGTTTTGTT;SbPval=1.0;Source=Platypus;TC=26;TCF=1;TCR=25;TR=12;WE=68416661;WS=68416629;set=Platypus	GT:AD:AF:DP	1/1:14,12:0.46:26
chr4	68424378	rs144504386	CTG	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.930;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.892;QD=0.54;ReadPosRankSum=-0.390;SOR=1.572;set=HC	GT:AD:AF:DP	0/1:90,11:0.11:101
chr4	68436883	rs13111555	T	C	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	68441091	rs2306810	T	C	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:107,115:0.52:222
chr4	68442968	rs11556614	A	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.415;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:76,52:0.41:128
chr4	68447200	rs2242331	A	G	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:170,155:0.48:325
chr4	68447249	rs2242330	A	G	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr4	68458937	rs3816821	G	C	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	68496080	rs354866	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr4	68547774	rs2627256	A	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr4	68619601	rs4986942	G	A	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,71:0.53:133
chr4	68700956	rs6824984	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	68812283	rs11930532	C	T	7210.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	68812444	rs34591422	T	TAA	392.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	68829004	rs10518051	A	G	6301.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:298,310:0.51:608
chr4	68829207	rs6552134	G	A	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:79,72:0.48:151
chr4	68904637	rs6552141	A	C	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:118,97:0.45:215
chr4	68904834	rs9999589	T	G	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr4	68919617	rs10018943	G	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:95,86:0.48:181
chr4	68928537	rs3819257	G	A	5364.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:270,254:0.48:524
chr4	68928740	rs1837215	G	A	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:143,131:0.48:274
chr4	68934306	rs10004522	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr4	68935672	rs12504120	G	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr4	68938002	rs12501405	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-2.120;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr4	68956422	rs57121360	T	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr4	68956498	rs13115830	C	T	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	68964768	rs12503814	G	C	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:85,108:0.56:193
chr4	69056974	rs114552880	T	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr4	69057073	rs4860284	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr4	69078113	rs4463136	T	C	4366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-1.174;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:210,205:0.49:415
chr4	69083563	rs10008636	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr4	69094507	rs2319797	T	A	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:110,80:0.42:190
chr4	69094575	rs2319796	T	G	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	69094926	rs63181060	TTAAA	T	595.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr4	69095197	rs12331141	T	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr4	69096810	rs10024748	G	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr4	69097150	rs5859125	TA	T	1556.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	69098006	rs6552175	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr4	69100137	rs35624784	G	GA	902.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr4	69100396	rs13151732	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:69,68:0.50:137
chr4	69416556	rs13102139	T	C	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr4	69433714	rs34664906	C	T	9301.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr4	69434217	rs28672900	G	A	6916.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	69533702	rs2045100	T	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr4	69886151	rs11730623	A	T	6616.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	69962610	rs28365063	A	G	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr4	69964180	rs7439326	T	C	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	69964209	rs7438244	A	G	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	69964234	rs34182209	C	CT,CTT	4657.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=4.134;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.000;QD=21.77;ReadPosRankSum=0.125;SOR=1.104;set=HC	GT:AD:AF:DP	1/2:13,85,116:0.40,0.54:214
chr4	69964271	rs28365062	A	G	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:180,138:0.43:318
chr4	69964337	rs7438284	AT	TC	12997.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr4	69972777	rs5013211	G	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	69972949	rs4292394	C	G	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=36.03;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	69972949	.	CTAC	GTAC,GTAT	1198	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=22;MQ=59.64;NF=69,29;NR=83,40;PP=1198,973;QD=8.11033692465;SC=ATACTCGGCTCTACAAGTGGA;SbPval=0.51;Source=Platypus;TC=153;TCF=69;TCR=84;TR=152,69;WE=69972960;WS=69972939;set=Platypus	GT:AF:DP	0/1:0.99:153
chr4	69972952	rs4348159	C	T	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=1.955;QD=9.83;ReadPosRankSum=-1.272;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:91,85:0.48:176
chr4	69978554	rs57075995	C	CA	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.638;QD=11.18;ReadPosRankSum=-0.609;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr4	70079975	rs7697037	A	G	4736.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:261,238:0.48:499
chr4	70283908	rs2642841	T	A	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	70288829	rs149235693	G	T	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.76;MQRankSum=0.508;QD=11.36;ReadPosRankSum=2.440;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr4	70288954	rs2736507	C	T	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.91;QD=28.31;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	70288981	rs2736505	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	70346711	rs28679647	G	C	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	70352164	rs41297427	A	AATTATC	478.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr4	70352266	rs1826690	A	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,48:0.47:103
chr4	70355211	rs1845555	T	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	70355380	rs28542932	T	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr4	70359694	rs7441743	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr4	70391344	rs10021990	G	T	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr4	70391429	rs11732968	G	A	2486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.056;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:102,73:0.42:175
chr4	70391454	rs11732996	G	A	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,65:0.43:152
chr4	70391536	rs66653481	C	T	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr4	70391561	rs68096061	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr4	70455478	rs2288741	G	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr4	70501545	rs28560191	C	A	122.10	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:1,6:0.86:7
chr4	70513139	rs1347046	C	T	14122.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr4	70592790	rs2292092	G	T	1919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.223;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:95,95:0.50:190
chr4	70599073	rs1847366	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:93,60:0.39:153
chr4	70615308	rs1503723	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr4	70620708	rs2134668	G	A	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	70707945	rs1220724	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	70713520	rs1220702	G	C	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:113,115:0.50:228
chr4	70802218	rs962689	T	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-0.105;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr4	70803380	rs1220860	T	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	70805829	rs35000195	TCA	T	677.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=14.800;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=-2.239;QD=26.07;ReadPosRankSum=1.316;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr4	70805833	rs201926356	A	T	686.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=14.800;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-2.239;QD=26.42;ReadPosRankSum=1.494;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr4	70807747	rs62305467	T	C	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-1.529;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr4	70807771	rs10030475	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:51,21:0.29:72
chr4	70808097	rs3775766	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr4	70811806	rs1237375	T	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr4	70865621	rs17698678	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr4	70898953	rs1136515	C	T	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:96,65:0.40:161
chr4	70899037	rs776852	T	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr4	70921164	rs2271643	TT	CC	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr4	70921337	rs2271644	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:56,56:0.50:112
chr4	70934964	rs4694266	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	70936305	rs17644242	C	T	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=9.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.760;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr4	70944452	rs1399812	G	A	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	70947318	rs2063819	C	T	9351.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.233;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr4	70947376	rs2063820	T	A	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	70948533	rs7675265	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	71008313	rs777398	G	T	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	71008365	rs115257454	C	G	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.507;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=0.231;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr4	71008375	rs777399	T	C	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	71009033	rs777400	A	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	71020205	rs1709273	C	G	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	71021888	rs1709274	C	T	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	71024010	rs111347259	T	TACAA	3058.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	71024099	rs1612460	A	G	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:106,89:0.46:195
chr4	71027213	rs62305548	G	T	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=2.707;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:59,55:0.48:114
chr4	71062256	rs3756132	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr4	71062342	rs3756131	C	T	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=-0.402;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:80,57:0.42:137
chr4	71062426	rs17704351	C	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.751;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:79,43:0.35:122
chr4	71063964	rs2306445	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr4	71065943	rs34093806	GA	G	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.507;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.896;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.794;QD=8.41;ReadPosRankSum=0.377;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr4	71067010	rs62307377	T	C	63.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	71067317	rs4694273	C	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr4	71068489	rs3196714	T	C	3604.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:181,166:0.48:347
chr4	71110488	rs41292331	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr4	71110505	rs140888032	AT	A	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.771;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr4	71110639	rs13103289	G	A	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=1.670;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:54,50:0.48:104
chr4	71110680	rs41292333	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr4	71110747	rs41292335	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.129;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr4	71110753	rs41292337	G	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=-0.588;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	71113633	rs10518071	T	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr4	71114676	rs3836687	TATA	T	1818.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr4	71114702	rs57550378	A	AT	1090.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:76,61:0.45:137
chr4	71115060	rs3775739	G	A	7935.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:443,383:0.46:826
chr4	71115152	rs3775738	T	C	5693.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:339,293:0.46:632
chr4	71201388	rs1351419	C	T	11907.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr4	71201943	rs13039	A	G	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:101,136:0.57:237
chr4	71227802	rs1842478	A	G	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:96,81:0.46:177
chr4	71227998	rs1842477	A	T	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.665;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.161;QD=14.89;ReadPosRankSum=-0.727;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:39,57:0.59:96
chr4	71228001	rs1842476	G	A	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=38.78;SOR=2.783;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	71232430	rs10024123	T	C	41835.77	.	AC=2;AF=1.00;AN=2;DB;DP=1575;set=Intersection	GT:AD:AF:DP	1/1:0,1575:1.00:1575
chr4	71232701	rs6853742	C	T	23904.77	.	AC=2;AF=1.00;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	1/1:0,859:1.00:859
chr4	71250308	rs2233586	T	A	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.63;QD=27.89;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	71250399	rs7676909	A	G	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	71255370	rs7674958	A	T	15149.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr4	71255593	rs2988	G	A	36186.77	.	AC=2;AF=1.00;AN=2;DB;DP=1306;set=Intersection	GT:AD:AF:DP	1/1:0,1296:1.00:1296
chr4	71255767	rs3733493	A	G	14258.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr4	71265172	rs1844635	A	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr4	71275012	rs1352689	T	C	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	71384488	rs28674149	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:131,92:0.41:223
chr4	71384579	rs35692424	G	A	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:236,253:0.52:489
chr4	71388379	rs28754427	A	T	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr4	71388394	rs4123809	T	G	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:107,89:0.45:196
chr4	71390795	rs17733287	C	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr4	71396989	rs17676820	C	T	3184.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:115,154:0.57:269
chr4	71398064	rs3852099	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr4	71467697	rs79200974	T	C	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:92,92:0.50:184
chr4	71468345	rs141384720	CAGG	C	1259.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr4	71468583	rs142022847	AT	A	753.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr4	71469529	rs7439194	C	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr4	71469556	rs7439191	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr4	71469604	rs7439186	C	T	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:113,98:0.46:211
chr4	71691743	rs6814981	C	T	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	71698183	rs4694081	C	A	11597.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr4	71704965	rs3775728	C	T	16268.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr4	71705262	rs6813092	A	G	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	71768079	rs1871048	C	G	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	71864013	rs6446988	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	71888332	rs373938314	C	CT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.492;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr4	71892513	rs1486271	A	T	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	71894321	rs35880082	C	CTTTT	838.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=41.94;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	71894476	rs11394166	A	AT	432.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=4.361;QD=13.96;ReadPosRankSum=2.336;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:5,26:0.84:31
chr4	71894563	rs12513202	C	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	71895260	rs4643786	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	72306223	rs34445073	C	A	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	72313411	rs34373561	C	T	3269.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:181,163:0.47:344
chr4	72316822	rs10022349	C	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	72397710	rs3775162	C	T	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	72397964	rs10446504	T	C	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr4	72411967	rs4694097	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	72423624	rs1453474	C	T	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	72425863	rs1453458	C	T	8880.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr4	72429433	rs6812916	G	A	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	72429452	rs2290397	G	A	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	72432991	rs965606	A	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	72433545	rs1062677	A	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	72433759	rs1453453	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	72607678	rs2070741	T	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr4	72618296	rs9016	T	C	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	72618323	rs4588	G	T	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-1.095;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:75,82:0.52:157
chr4	72620865	rs71673486	C	CTATTTATT,CTATTTATTTATT	3058.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=174;set=Intersection	GT:AF:DP	1/2:0.57,0.43:60
chr4	72622403	rs222033	A	C	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	72628969	rs2276461	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr4	72634192	.	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.439;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:56,14:0.20:70
chr4	72634975	rs222016	G	A	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:115,134:0.54:249
chr4	72649774	rs3733359	G	A	4970.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:195,240:0.55:435
chr4	72669491	rs59662561	G	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr4	72934539	rs9884712	A	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	72934578	rs11444220	C	CT	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	72934632	rs9884478	C	T	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	73175048	rs12501859	G	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr4	73175093	rs10024487	C	T	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	73414286	rs788908	C	T	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:153,156:0.50:309
chr4	73433122	rs33925079	GA	G	2734.73	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:166,101:0.38:267
chr4	73433315	rs6830556	G	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	73434379	rs5859330	GT	G	4515.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	73434536	.	A	AC	918.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=1.141;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:18,42:0.70:60
chr4	73615956	rs1350836	C	T	4509.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:204,207:0.50:411
chr4	73930552	rs3762883	G	A	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr4	73930889	.	CTT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=5.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.104;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr4	73930893	rs2126115	T	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=27.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=2.185;SOR=2.230;set=HC	GT:AD:AF:DP	0/1:29,30:0.51:59
chr4	73931170	rs2306057	T	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:66,47:0.42:113
chr4	73933671	rs68113340	ATGTGTG	A,ATGTG	4157.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.38;MQRankSum=0.257;QD=31.98;ReadPosRankSum=1.293;SOR=1.042;set=HC	GT:AD:AF:DP	1/2:3,76,51:0.58,0.39:130
chr4	73956736	rs6855349	G	A	4732.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:247,216:0.47:463
chr4	73991006	rs6822576	T	C	7646.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr4	74007870	rs12500051	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr4	74012462	rs13149759	A	T	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:153,144:0.48:297
chr4	74043132	.	G	T	1013.77	.	AC=1;AF=0.500;AN=2;DP=179;set=Intersection	GT:AD:AF:DP	0/1:121,54:0.31:175
chr4	74274864	rs113884088	G	GCACA	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr4	74281012	rs6832260	T	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr4	74282092	rs35807836	A	AT	138.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	74285239	rs962004	C	T	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:138,99:0.42:237
chr4	74285758	rs2236766	G	T	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=2.857;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:72,70:0.49:142
chr4	74285823	rs2236767	G	A	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,71:0.52:136
chr4	74302071	rs3796678	T	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.872;SOR=1.348;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr4	74302151	rs3796677	A	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	74302800	rs41265655	A	C	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.004;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:63,61:0.49:124
chr4	74302870	rs16849384	T	C	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:93,69:0.43:162
chr4	74304118	rs6446932	T	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	74310844	rs2298839	A	G	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:121,121:0.50:242
chr4	74313169	rs7667494	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	74318330	rs4235117	A	G	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	74349867	rs11939341	A	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	74350157	.	C	CTCTT	956.73	.	AC=2;AF=1.00;AN=2;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=41.60;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	74357851	rs11733262	A	G	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	74361254	rs10212657	T	C	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	74364992	rs67050083	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.813;QD=0.75;ReadPosRankSum=-0.709;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:118,32:0.21:150
chr4	74447417	rs1247669	C	G	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr4	74447452	rs1247670	C	T	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	74447492	rs2272427	G	A	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:119,108:0.48:227
chr4	74447510	rs1247671	A	C	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	74453782	rs10009048	A	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr4	74458987	rs34169741	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr4	74464285	rs10632092	T	TTG	2522.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:4,76:0.95:80
chr4	74464443	rs11368217	TA	T	1068.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	74486052	rs1247591	C	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	74486245	rs1919471	C	T	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:92,79:0.46:171
chr4	74486264	rs1247590	G	A	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	74607868	rs369603475	TA	T	215.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	74711697	.	C	T	169.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr4	74711842	rs34821794	C	T	1853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.833;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:104,92:0.47:196
chr4	74713950	rs7658970	T	C	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	74714098	rs2367288	G	A	19377.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,718:1.00:718
chr4	74718941	rs941758	C	A	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	74719925	rs11723868	G	A	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	74735150	rs11547681	G	T	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=1.586;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:145,108:0.43:253
chr4	74735244	rs2071425	A	G	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:191,139:0.42:330
chr4	74736144	rs4074	A	G	4201.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:207,197:0.49:404
chr4	74847292	rs352007	G	C	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	74863997	rs425535	T	C	14381.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr4	74904296	rs182216932	G	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:101,85:0.46:186
chr4	75023609	rs6840665	T	C	16017.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr4	75023709	rs2289443	C	T	22318.77	.	AC=2;AF=1.00;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	1/1:0,821:1.00:821
chr4	75040944	rs13116686	T	G	10821.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr4	75046310	rs4694183	A	C	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	75046372	rs561583	A	G	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	75046465	rs561844	C	G	8692.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr4	75107255	rs4694184	T	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	75147041	.	CGT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=4.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.324;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr4	75231244	rs1460006	C	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=9.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-2.181;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr4	75245343	rs7660209	T	A	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	75246617	rs4694187	A	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr4	75248434	rs2367707	A	G	3380.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:189,161:0.46:350
chr4	75248505	rs78803121	G	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:113,92:0.45:205
chr4	75248544	rs2367708	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr4	75673363	rs4585380	G	A	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:64,77:0.55:141
chr4	75673455	rs7699847	T	A	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-1.094;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr4	75673533	rs62316277	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr4	75675706	rs35926103	A	G	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr4	75675841	rs11938093	A	T	5140.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:345,252:0.42:597
chr4	75681217	rs11734944	A	G	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.398;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:94,76:0.45:170
chr4	75719761	rs2278862	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr4	75937971	rs3822109	C	T	11458.77	.	AC=1;AF=0.500;AN=2;DB;DP=952;set=Intersection	GT:AD:AF:DP	0/1:449,498:0.53:947
chr4	75938179	rs3775527	G	A	12926.77	.	AC=1;AF=0.500;AN=2;DB;DP=1251;set=Intersection	GT:AD:AF:DP	0/1:639,605:0.49:1244
chr4	75938236	rs1062293	A	G	21566.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:0,752:1.00:752
chr4	75938373	rs919052	C	G	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	75971289	rs3733467	C	G	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr4	76415693	rs200764232	G	GTA	1435.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:85,92:0.52:177
chr4	76415985	rs6833496	G	A	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	76416779	rs2045863	G	A	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,191:0.99:193
chr4	76434352	rs2306177	T	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,55:0.52:106
chr4	76442226	rs34218401	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.541;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	76446921	rs112121251	G	GATT	3786.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:120,101:0.46:221
chr4	76452233	rs141771853	G	A	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:191,166:0.46:357
chr4	76467577	rs11722735	A	G	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,78:0.60:131
chr4	76474792	rs58556403	C	CTT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=9.890;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=1.198;QD=4.63;ReadPosRankSum=0.819;SOR=2.526;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr4	76481628	rs62318656	A	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr4	76488533	rs141320514	GCCAAAAT	G	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr4	76528890	rs143881212	C	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=-0.674;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	76528895	rs7666551	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.78;ReadPosRankSum=1.255;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	76570994	rs35597810	C	A	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:65,67:0.51:132
chr4	76571732	rs884871	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr4	76572191	rs2175766	A	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	76573688	rs13129043	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr4	76580894	rs17000733	G	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:106,103:0.49:209
chr4	76581064	rs6823013	C	T	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:129,121:0.48:250
chr4	76649924	rs2280095	C	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	76650176	rs7657871	C	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	76670180	rs3853184	T	C	22966.77	.	AC=2;AF=1.00;AN=2;DB;DP=856;set=Intersection	GT:AD:AF:DP	1/1:0,855:1.00:855
chr4	76676475	rs28573275	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	76691828	rs324715	G	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	76691850	rs3215203	CACTT	C	1675.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	76721671	.	CT	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.740;QD=1.19;ReadPosRankSum=0.563;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr4	76725245	rs381067	G	T	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	76785716	rs1394913	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	76785723	rs1394914	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	76785736	rs1394915	T	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	76787673	rs7654738	T	C	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	76788692	rs2135234	C	T	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	76793228	rs1394916	A	G	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	76794345	rs6858658	T	G	13236.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,480:1.00:481
chr4	76797950	rs13132709	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	76800729	rs13130621	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	76800991	rs68095351	A	AT	476.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.73;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	76804067	rs4859564	A	G	8723.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr4	76805902	rs1976518	C	T	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	76805962	rs1976517	G	A	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	76805978	rs1566975	C	T	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	76809319	rs7691712	A	G	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	76809386	rs7691755	A	G	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	76812673	rs13116688	C	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	76817412	rs11731367	G	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	76836137	rs6823734	A	G	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	76838929	rs34444403	TA	T	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.065;QD=2.57;ReadPosRankSum=-0.794;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:144,73:0.34:217
chr4	76839108	rs6819442	C	T	9707.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr4	76841748	rs2280101	A	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	76846755	rs937788	T	C	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	76861137	rs6847716	G	C	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	76861859	rs2292533	C	T	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	76878716	rs2242471	G	C	6797.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	76878956	rs2242473	G	A	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	76878982	rs2242474	T	C	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	76997157	rs10674212	G	GT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=5.432;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.539;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:113,31:0.22:144
chr4	77021288	rs7654988	G	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr4	77021433	rs6532189	C	T	2287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=0.768;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:115,110:0.49:225
chr4	77022286	rs17001385	C	G	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:106,116:0.52:222
chr4	77025273	rs7682766	C	T	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:91,76:0.46:167
chr4	77033590	rs1128864	C	T	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:178,175:0.50:353
chr4	77033725	rs14773	C	A	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr4	77039352	rs13115827	A	G	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:115,131:0.53:246
chr4	77052530	rs13126384	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=1.399;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr4	77053562	rs4859619	C	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr4	77065264	rs11736522	C	T	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:154,147:0.49:301
chr4	77065476	rs145851413	TAA	T	3720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.055;QD=12.08;ReadPosRankSum=-1.035;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:138,170:0.55:308
chr4	77065518	rs11946345	T	C	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:143,157:0.52:300
chr4	77066587	rs13151075	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr4	77067133	rs735696	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr4	77067368	rs735697	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr4	77067389	rs2197104	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr4	77105938	.	C	CA	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.710;QD=1.17;ReadPosRankSum=0.713;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:142,37:0.21:179
chr4	77189984	rs1876538	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:57,44:0.44:101
chr4	77190069	rs1876539	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr4	77192688	rs3733253	G	T	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:54,74:0.58:128
chr4	77192868	rs3733250	G	A	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:104,123:0.54:227
chr4	77199414	rs964051	C	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr4	77201332	rs1036787	G	A	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	77201487	rs1036788	C	T	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	77204398	rs74988469	CAT	C	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	77204500	rs1542096	C	T	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.673;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:31,34:0.52:65
chr4	77255246	rs114878412	G	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,54:0.45:121
chr4	77274242	rs12504985	T	C	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:139,163:0.54:302
chr4	77289047	rs5859510	CT	C	602.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=0.112;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr4	77290561	rs72657825	G	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr4	77296600	rs1876535	T	C	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:133,105:0.44:238
chr4	77300408	rs116383392	G	A	4444.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:258,214:0.45:472
chr4	77303898	rs6844174	C	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	77305346	rs17001890	A	G	4752.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:278,241:0.46:519
chr4	77494534	.	CAATAATAATAAT	C,CAAT	1385.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=39;set=Intersection	GT:AF:DP	1/2:0.77,0.23:35
chr4	77494621	rs12108253	T	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr4	77631425	rs3821979	T	A	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:153,175:0.53:328
chr4	77637502	rs344122	A	C	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:234,195:0.45:429
chr4	77660162	rs344140	G	C	4810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.137;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:231,223:0.49:454
chr4	77669990	rs369929014	TA	T	30.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.449;ClippingRankSum=-0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.79;ReadPosRankSum=1.158;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr4	77669991	rs11097499	A	T	54.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.378;ClippingRankSum=-0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=-1.158;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	77675505	rs3733242	C	T	19498.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr4	77817362	rs2703131	T	C	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:186,177:0.49:363
chr4	77817874	rs2703130	G	T	6636.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:378,324:0.46:702
chr4	77818202	rs2645674	T	C	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:129,115:0.47:244
chr4	77818548	rs2703129	T	C	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr4	77871016	rs873090	T	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr4	77916865	rs6532758	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr4	77917194	rs7356354	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr4	77917458	rs7685131	A	G	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:83,90:0.52:173
chr4	77977281	rs4252900	A	G	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:128,103:0.45:231
chr4	77987351	rs4241602	A	G	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	78034274	rs115177547	G	T	5798.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:375,290:0.44:665
chr4	78081744	rs28648488	G	C	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr4	78106123	rs28503908	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr4	78669278	rs80337171	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr4	78669454	rs6855336	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr4	78697552	rs34417165	T	TA	904.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.157;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.25;ReadPosRankSum=-0.632;SOR=0.491;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr4	78740066	rs6811439	T	C	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.829;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr4	78740132	rs6828302	G	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr4	78740169	rs144725638	C	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr4	78740203	.	G	GAC,GACAC	1078.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=4.775;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.000;QD=17.12;ReadPosRankSum=1.572;SOR=1.579;set=HC	GT:AD:AF:DP	1/2:16,29,18:0.46,0.29:63
chr4	78783818	rs60135456	G	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr4	78830272	rs10551874	AAC	A	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr4	78830584	rs72869573	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr4	78870940	rs4859513	T	A	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:117,92:0.44:209
chr4	78882331	rs57716781	C	CA	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=8.282;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.516;QD=5.69;ReadPosRankSum=2.264;SOR=1.877;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr4	78979141	rs34237418	C	T	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:109,86:0.44:195
chr4	78979257	rs71661147	C	CGTGT	1759.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:79,63:0.44:142
chr4	78987157	rs4859905	A	G	10459.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr4	78987284	rs4859516	AC	CA	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr4	78989630	rs10016219	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr4	78989672	rs10016229	G	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr4	78989716	rs10008489	T	C	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,50:0.51:99
chr4	78989842	rs10016432	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr4	79158843	rs10011303	G	T	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	79173515	rs34015316	C	CT	6604.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:38,342:0.90:380
chr4	79176325	rs1017647	C	T	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	79176361	rs1017646	T	C	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	79186171	rs2867014	G	A	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr4	79187832	rs2008587	G	A	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	79187900	rs7694740	T	G	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	79188160	rs2008786	C	T	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	79204209	rs1378236	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	79308454	rs140683692	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr4	79345652	rs149695943	CATT	C	1688.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr4	79350200	rs369673391	CTG	C	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.404;QD=2.04;ReadPosRankSum=0.789;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:102,18:0.15:120
chr4	79372819	rs62308080	G	C	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:98,90:0.48:188
chr4	79387464	rs7684722	A	G	22675.77	.	AC=2;AF=1.00;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	1/1:0,851:1.00:851
chr4	79387586	rs34840208	A	G	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.34;SOR=1.940;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	79391020	rs7681619	C	T	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	79391036	rs1496602	T	C	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	79391256	rs7664505	T	C	9032.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr4	79391392	rs10018235	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	79391424	rs6533688	C	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	79393269	rs28566963	T	C	9889.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr4	79403747	rs924149	C	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	79409997	rs1496603	T	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	79417863	rs7674053	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	79420864	rs7677541	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=2.557;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	79420870	rs7695038	C	G	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.88;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	79428447	rs13141571	G	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	79428489	rs13118276	A	G	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	79428796	rs28739412	C	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	79432455	rs3749488	A	C	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	79440425	rs2903471	T	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	79442475	.	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.604;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr4	79442799	rs11360692	GT	G	728.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr4	79443774	rs931604	T	A	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	79443850	rs931606	G	A	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	79444029	rs1496598	G	A	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	79455714	rs4975070	C	G	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr4	79455733	rs4975139	C	T	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr4	79455858	rs4975140	T	A	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	79460647	.	GAA	G,GA	568.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.339;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.07;MQRankSum=0.928;QD=14.22;ReadPosRankSum=1.310;SOR=1.863;set=HC	GT:AD:AF:DP	1/2:5,12,23:0.30,0.57:40
chr4	79503230	rs1472365	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr4	79512800	rs10003947	T	A	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:144,120:0.45:264
chr4	79531186	rs5944	C	T	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	79531308	rs4612	C	T	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	79781169	.	G	GT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-1.666;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:57,25:0.30:82
chr4	79845007	rs13108247	C	A	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	79847634	.	G	GA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.173;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr4	79854436	rs10857059	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	80975372	rs10745242	A	T	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	80976420	rs11730210	G	T	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	80977078	rs4594664	T	G	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	81222286	rs13119149	T	G	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	81529380	rs2903671	T	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	81529518	rs2867782	T	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	81884610	rs11452353	A	AT	1433.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=26.07;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	81884722	rs1052325	G	A	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.85;QD=26.21;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	81967188	rs6831040	C	T	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	81973163	rs77958746	T	A	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	81973224	rs12647814	A	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	81973260	rs1390318	C	T	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	81973364	rs17005035	C	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	82013619	.	AAAGGAAGGAAGG	A	509.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=39.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	82025691	rs1443544	A	C	150.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	82058647	rs2868140	A	G	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	82065566	rs7687935	A	T	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	82088478	rs3733551	T	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	82092870	rs17005080	A	G	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	82092967	rs9992933	C	T	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	82369160	rs1077802	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	82369205	rs1077803	T	A	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	83276386	rs34411705	G	A	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	83276430	rs3838641	C	CA	393.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	83294784	.	C	T	1519.77	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	83347309	rs34583014	TAAGA	T	2394.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	83352177	rs10646358	C	CTT	3092.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	83369287	rs4285076	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	83375719	rs6853622	T	C	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	83406549	rs113689314	A	ATGTGTG	231.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	83424089	.	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.847;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr4	83483562	rs35866205	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	83552809	rs3857138	A	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	83582083	rs17006063	G	A	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	83626559	.	G	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.786;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:148,38:0.20:186
chr4	83626674	rs6853042	G	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	83742336	rs4634209	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	83778378	rs4235054	A	T	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	83782888	rs72662894	G	A	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	83784337	rs7666917	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	83787845	rs7356522	G	A	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	83788139	rs2290739	C	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	83788344	rs2045478	A	T	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	83788562	rs2045479	T	C	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	83791373	rs10015419	C	T	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	83791649	rs3762902	G	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	83792464	rs10548601	TACAC	T,TAC	516.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.40;ReadPosRankSum=1.276;SOR=1.112;set=HC	GT:AD:AF:DP	1/2:2,7,8:0.41,0.47:17
chr4	83792498	rs7685043	G	T	701.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.90;ReadPosRankSum=-1.316;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr4	83792555	rs7686508	C	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	83793243	rs4693525	A	C	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	83793354	rs143845447	A	ATTTTG	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	83793368	rs11942312	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	83795806	rs10025654	T	C	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	83838217	rs1031639	G	A	5575.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	83838262	rs897945	G	T	6670.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	83839799	rs6535411	A	G	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	83852065	rs985899	G	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	83857402	rs6535415	T	C	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr4	83900043	rs6535422	A	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	83900260	rs7674484	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	83905258	rs9994716	C	G	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	83977975	rs6535432	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	83989516	rs2868747	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	84188850	rs1129617	G	A	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	84223461	rs4285078	G	C	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	84230619	rs11099592	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	84232104	rs6535455	T	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	84234190	rs6818355	A	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	84234229	rs6840520	G	A	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	84240654	rs12501123	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	84240680	rs12501124	G	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	84347363	rs4693624	A	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	84352750	rs12645412	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	84353154	rs2047210	T	C	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	84362443	rs4693088	T	G	1335.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.065;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=1.690;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr4	84364751	rs7665103	A	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.49;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	84364808	rs6535473	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	84367050	rs11099599	G	A	279.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	84367286	rs11099600	G	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	84368225	rs11272773	GCATTGTGGCCAATGCCTGTAATCC	G	1122.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	84370091	rs13141136	A	G	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	84370124	rs10718573	TA	T	1371.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:3,68:0.96:71
chr4	84374480	rs1494961	C	T	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	84376743	rs6831595	A	T	8422.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr4	84377497	rs2279658	A	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	84380955	rs12505955	G	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	84381035	rs34365268	CA	C	562.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	84382058	rs34734728	CA	C	279.06	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr4	84383810	rs12642536	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	84393475	rs6535478	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	84397590	rs17352803	A	C	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	84397620	rs17352824	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	84401623	rs6838354	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	84403491	rs35608460	A	AG	353.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	84502602	rs17355321	A	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	84509465	rs11394944	T	TG	5117.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	84515968	rs3733327	C	T	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	84518558	rs3733329	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	84519775	rs71668661	AT	A	548.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr4	84519828	rs62303973	G	A	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	84525973	rs35602893	CT	C	2541.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	85414741	rs13123447	C	T	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	85416797	rs2278671	T	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	85465390	.	ATT	A	1522.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.21;MQRankSum=0.518;QD=29.86;ReadPosRankSum=0.291;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:2,49:0.96:51
chr4	85504633	.	G	C	4192.77	.	AC=2;AF=1.00;AN=2;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	85504719	.	G	C	2879.77	.	AC=2;AF=1.00;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	85530796	rs17009168	A	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	85555196	rs13102661	G	A	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	85556392	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=4.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.669;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr4	85560000	rs34754898	T	TTA	42.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	85612737	rs3747680	A	G	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	85625701	rs1838039	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	85634488	rs13108722	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	85647941	rs71670880	T	TA	275.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	85656350	rs6838727	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	85699579	rs12502409	A	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	85710822	rs200702938	ACC	A	49.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.145;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.099;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr4	85710824	rs13137042	C	A	201.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.589;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr4	85730914	rs6531775	T	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	85762385	rs2046402	T	C	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	86863206	rs11367691	CT	C	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	87019904	rs4133139	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	87638342	rs35080587	A	AT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.883;QD=5.56;ReadPosRankSum=0.182;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr4	87638364	rs4263359	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.47;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	87679642	rs1420624	A	C	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr4	87684031	rs710832	A	G	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	87690998	rs2230600	A	G	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	87706506	rs989902	T	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.577;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	87720470	rs11358237	CT	C	74.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=9.36;ReadPosRankSum=-1.534;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr4	87728676	rs17694112	A	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	87731238	rs11930396	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	87754419	rs10050311	C	T	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	87754713	rs7678571	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	87769929	rs13106574	T	C	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	87809387	rs1550931	G	T	5067.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	87811360	.	G	GAGGAAGGA	250.77	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.73;QD=35.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	87812564	rs10011798	G	C	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	87812586	rs55723875	TA	T	3016.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:5,153:0.97:158
chr4	87812588	rs114349215	A	T	2831.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:10,146:0.94:156
chr4	87812810	rs35305216	G	GA	1011.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	87957989	rs340629	T	C	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=27.49;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	88005203	rs236996	G	A	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	88056925	rs342464	A	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	88231248	rs111468512	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	88231324	.	T	TA	500.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=3.590;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.30;ReadPosRankSum=0.870;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr4	88231339	rs59716219	CA	C	640.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.12;ReadPosRankSum=1.422;SOR=0.365;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr4	88234874	rs7698974	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	88238448	rs6531975	A	G	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	88258483	rs9991501	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	88293745	rs6849846	A	G	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	88293887	rs6531985	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	88293992	rs11375790	G	GA	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	88295786	rs62319101	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	88296051	.	A	AT	107.90	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr4	88312293	rs28654511	A	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	88401616	rs9933	A	G	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	88401735	rs34452129	CTA	C	2522.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	88403823	rs6857504	T	G	289.79	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr4	88415636	rs1049544	G	C	11275.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr4	88416188	rs13051	G	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	88416223	rs8342	A	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	88532182	.	A	AGTGTGT	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.57;ReadPosRankSum=0.126;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr4	88533163	.	TTG	T	177.77	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	88533540	rs36094464	A	T	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	88534235	rs2736982	A	G	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	88537522	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=51;MMLQ=23;MQ=57.1;NF=147;NR=124;PP=2962;QD=20;SC=AAAGCAGCGACAGCAGTGACA;SbPval=0.44;Source=Platypus;TC=549;TCF=306;TCR=243;TR=271;WE=88537530;WS=88537494;set=Platypus	GT:AD:AF:DP	0/1:278,271:0.49:549
chr4	88537522	.	C	CAGCAGTGACAGCAGCGAT	12752.73	.	AC=2;AF=1.00;AN=2;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.94;QD=54.27;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr4	88537737	rs2615489	G	A	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	88577573	rs2615480	A	G	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	88578310	rs2615479	A	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	88584148	rs2615498	C	T	6288.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	88584160	rs2615497	G	A	6258.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	88584507	rs2627724	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	88755828	rs7698623	T	C	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	88813269	rs71594826	G	GC	13513.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=45.20;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr4	88813270	.	C	CCAAT	2973	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=59.9;NF=46;NR=107;PP=2973;QD=20;SC=CAGGCATTGGCATGACCAAAG;SbPval=0.39;Source=Platypus;TC=176;TCF=49;TCR=127;TR=153;WE=88813279;WS=88813260;set=Platypus	GT:AD:AF:DP	1/1:23,153:0.87:176
chr4	88813271	.	A	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=59.87;NF=102;NR=107;PP=2965;QD=20;SC=AGGCATTGGCATGACCAAAGC;SbPval=0.57;Source=Platypus;TC=231;TCF=114;TCR=117;TR=209;WE=88813279;WS=88813260;set=Platypus	GT:AD:AF:DP	1/1:22,209:0.90:231
chr4	88813271	rs35753589	A	AATT	13874.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=45.94;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr4	88813503	rs6532031	T	C	6414.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	88813875	rs3828554	T	C	8921.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr4	88815163	rs3061166	A	ATTAGG	13209.73	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	88815439	rs70957285	C	CA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.73;ReadPosRankSum=-1.363;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr4	88898941	rs11728697	C	T	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	88959381	rs2725221	G	A	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	89015857	rs2231164	C	T	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	89016782	rs2231162	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	89018565	rs2231157	A	G	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	89022362	rs2231153	C	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	89036353	rs2725261	C	T	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	89415396	rs6857425	T	C	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr4	89599421	rs2604227	A	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	89689354	rs3756049	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	89702564	rs2290784	C	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	89711849	rs2290782	T	C	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	89711854	rs2290781	C	T	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	89726073	rs3822075	T	A	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	89726283	rs2276936	A	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	89827492	rs13132415	G	T	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	89978281	rs11097210	G	A	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	90168825	rs7672015	T	C	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	90169925	rs7653897	A	G	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	90749132	rs1442149	A	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	90749463	rs149886412	G	GAAAA,GAAAAA	1386.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;QD=39.62;SOR=7.054;set=HC	GT:AD:AF:DP	1/2:0,14,21:0.40,0.60:35
chr4	91246905	rs9284586	C	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	91246916	rs9284587	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	91549156	rs11303496	CT	C	1428.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:3,73:0.96:76
chr4	91584811	rs6842658	A	T	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	91584992	rs6842926	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	91585060	rs6843110	A	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.97;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	91701720	rs2271592	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	91737018	rs3796673	C	T	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	94032125	rs2271385	G	C	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	94159770	rs13142615	A	G	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	94180159	rs7687990	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	94316763	rs1385405	T	G	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr4	94376675	rs6819866	A	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	94750058	rs10009502	C	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	95255637	rs2289186	T	G	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	95498617	rs35078286	GAT	G	761.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	95500499	rs56338363	A	G	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	95500628	rs3828518	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	95503670	rs3857212	G	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	95506214	rs2172448	G	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	95506842	rs11097431	G	A	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	95508108	rs35595077	C	CT	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.549;QD=5.03;ReadPosRankSum=0.730;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:44,38:0.46:82
chr4	95529430	rs10033359	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	95529444	rs9307146	C	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	95531417	rs10017461	A	G	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	95531562	rs10007050	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	95539267	rs966845	G	A	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	95561651	.	GTT	G,GT	458.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.840;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.522;QD=12.74;ReadPosRankSum=1.445;SOR=0.430;set=HC	GT:AD:AF:DP	1/2:6,11,19:0.31,0.53:36
chr4	95578588	rs13107595	G	A	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	95583827	rs10031423	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	95585038	rs56921499	G	A	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	95585225	rs1056772	A	G	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	95587259	rs11550270	A	C	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	96035796	rs10622489	G	GAC	923.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	96073956	rs1365691	A	T	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	96075965	rs1434536	C	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	96091250	rs2241744	G	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	96091524	rs2241743	G	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	96106322	rs2289043	A	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	96123981	rs3733212	C	T	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	96127869	rs2276322	T	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	96137512	rs995062	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	96166342	.	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	96256616	rs4699423	A	G	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	96256673	rs1843018	G	A	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	98893437	rs783960	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	98893476	rs783959	C	T	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	99358083	rs11386407	A	AT	1165.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	99358227	rs74411548	T	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	99363348	rs200523488	CTACCA	C	1692.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	99393671	rs1045655	G	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	99400075	rs73832318	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	99408106	rs6838913	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	99802300	.	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.744;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr4	99824511	.	G	GT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.745;QD=3.14;ReadPosRankSum=-1.103;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr4	99918661	rs10035037	A	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	99926965	rs2123782	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	99952607	rs1037476	C	T	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	99952710	rs1037475	A	G	7237.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr4	99966568	rs11721765	G	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	100001247	rs1154412	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	100006645	rs1154410	A	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	100009738	rs1154401	G	C	8563.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr4	100009952	rs11434442	T	TGG	129.87	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	100021124	rs2851279	T	C	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	100021253	rs2851278	G	C	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	100045500	rs1042365	T	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	100045574	rs1042364	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	100045616	rs1126673	C	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	100045647	rs2602894	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	100048327	rs9307234	G	A	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	100048414	rs1126671	T	C	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr4	100048506	rs6836440	G	A	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	100052733	rs1126670	C	A	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	100062819	rs2032349	A	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	100064166	rs5860566	G	GA	66.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	100064247	rs2032348	G	T	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	100064305	rs4699715	C	G	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	100065509	rs1800759	T	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	100128753	rs4147545	T	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	100131163	rs6833176	G	C	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	100134713	rs5860571	A	AT	6471.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	100140306	rs4699735	A	T	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	100200509	rs3819197	C	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	100231342	rs10033960	G	A	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	100235053	rs1789882	A	G	13863.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr4	100239319	rs1229984	T	C	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	100258054	rs1693453	C	A	9725.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr4	100258155	rs1614972	C	T	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	100260669	rs5860576	GCCC	G	1389.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	100260681	rs1975438	C	A	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	100266133	rs2241894	T	C	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	100268190	rs283413	A	C	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	100348837	.	GT	G	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.845;QD=6.37;ReadPosRankSum=-0.125;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:30,28:0.48:58
chr4	100443561	rs13142939	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	100443720	rs13143848	G	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	100443782	rs13119384	T	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	100443782	.	TCC	CCG	1657	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=6;HapScore=1;MGOF=31;MMLQ=24;MQ=60.0;NF=15;NR=25;PP=1657;QD=42.7616968716;SC=CAGTTACCCCTCCAGCACTGC;SbPval=0.6;Source=Platypus;TC=41;TCF=16;TCR=25;TR=40;WE=100443792;WS=100443772;set=Platypus	GT:AD:AF:DP	1/1:1,40:0.98:41
chr4	100443784	rs61732380	C	G	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	100443800	rs17029087	G	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	100445589	rs35080520	T	TC	289.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	100475179	rs4699754	T	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	100510859	rs991811	T	C	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	100515774	rs2306984	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	100516022	rs2306985	C	G	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	100532253	rs2298747	A	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	100542482	rs881981	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	100570681	rs4699384	T	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	100571001	rs1491242	T	C	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	100572170	.	C	A	6811.77	.	AC=2;AF=1.00;AN=2;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	100574195	rs4699385	A	G	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	100574821	rs79703522	C	G	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr4	100575711	rs17029277	C	T	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	101338217	rs3733437	T	C	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	101343979	rs71878999	CT	C	944.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.79;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	101368501	rs1157181	A	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	101396459	.	T	TACACAC	143	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	101953322	rs2851060	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	102171591	rs2583404	T	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	102171606	rs2850958	A	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	102267821	rs2850327	AA	CG	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	102642453	rs10856962	T	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	102642526	rs12506517	T	C	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	102839361	.	TA	T	356	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=9;HapScore=4;MGOF=2;MMLQ=28;MQ=60.0;NF=0;NR=6;PP=356;QD=61.3333333333;SC=GTTTTTTTTTTAAATTATATC;SbPval=1.0;Source=Platypus;TC=29;TCF=1;TCR=28;TR=6;WE=102839370;WS=102839341;set=Platypus	GT:AD:AF:DP	1/1:23,6:0.21:29
chr4	102839362	rs3733198	A	T	638.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.79;ReadPosRankSum=1.675;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:3,31:0.91:34
chr4	102965043	rs3113676	T	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr4	103458888	rs3830689	TCA	T	647.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	103537774	rs4648143	G	A	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	103594918	rs227276	T	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	103594938	rs227277	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	103610872	rs227365	A	G	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	103611845	rs227368	C	T	9600.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr4	103612018	rs227369	G	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	103732704	rs201561589	T	TG	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	103747067	rs146484705	C	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	103911069	rs2715591	C	A	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	104054117	.	TTA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.30;ReadPosRankSum=-0.256;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr4	104066273	rs61751594	T	G	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	105393320	rs4282179	T	C	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	105393329	rs10693247	C	CT	182.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=22.87;ReadPosRankSum=1.150;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr4	105393361	rs4413407	A	G	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	106196829	rs34402524	T	G	7400.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	106474096	rs6533206	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	106569976	rs377587421	CCT	C	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-0.431;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr4	106848314	rs4546247	C	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	106848703	rs10856978	C	T	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	106859549	rs35132891	G	C	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	106861557	rs4627867	A	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	106861730	rs4340795	A	G	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	106888263	rs4597836	A	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	106892210	rs4449421	T	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	107154273	rs13138528	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	107156365	rs7668276	C	G	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	107165685	rs58634260	TA	T	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr4	107168431	rs3775091	G	C	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	107172377	rs13113845	C	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	107288114	.	A	ATATTAT	728.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=45.55;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	108535335	rs9569	C	T	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	108535641	rs5860872	GA	G	131.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	108553048	rs3756270	G	C	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	108575989	rs3733633	G	A	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	108581002	rs11291153	GC	G	741.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	108608100	rs45502094	CTCTAACACT	C	1689.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	108615226	rs371693146	CT	C	1276.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	108622169	rs71590193	A	AT	1233.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	108641169	rs2074372	C	G	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	108641300	rs973126	T	C	7861.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr4	108641464	rs1319253	AA	GC	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	108853384	rs6849089	C	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	108866058	rs10002671	G	A	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	108868515	rs6856745	T	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	108926170	rs3775973	T	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	108931039	rs4956145	T	C	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	108931133	rs11388783	C	CT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=1.545;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr4	108935770	rs7677408	T	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-1.238;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:19,43:0.69:62
chr4	108935871	rs4956147	G	A	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	108944579	rs4956032	C	T	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	108944821	rs4956033	C	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	108944846	rs4956034	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	108969590	rs4245927	A	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	108985388	rs4613638	A	G	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	108991979	rs2276335	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	108999300	rs4956156	G	T	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	108999366	rs4956157	G	A	8253.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr4	109000536	rs6819640	T	C	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	109002986	rs7681524	T	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	109010207	rs16996935	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	109576843	rs2851380	G	T	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	109588238	rs2851374	G	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	109664819	rs6533381	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	109669319	.	T	TA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.362;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr4	109745336	rs7689008	T	G	4389.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=0.585;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:2,169:0.99:171
chr4	109766177	rs10015534	G	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	109766290	rs11098004	T	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	109767453	rs5860952	C	CA	4939.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	109769844	rs13130308	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	109769899	rs13135591	C	T	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	109783755	rs146165021	ACAG	A	3576.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	109790346	.	C	CAATAAATA	2140.73	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	109810573	rs200588468	ATT	A	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.228;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.205;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr4	109841889	rs5860955	G	GA	313.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	109842038	rs2030844	T	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	109895718	rs70949061	GA	G	1221.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	109971378	rs1863291	T	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.70;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	110370552	.	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.723;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr4	110370867	rs13123618	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	110384047	rs70949082	G	GCTTTT	4284.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	110585645	rs767598	G	A	219.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	110602430	rs4698780	T	G	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	110603784	rs3733611	T	C	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	110605744	rs13846	A	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	110606394	rs3214165	C	CT	270.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;MQRankSum=0.567;QD=15.91;ReadPosRankSum=-1.193;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr4	110608536	rs13151303	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	110619534	rs2301717	T	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr4	110638810	rs2285714	C	T	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	110661937	rs551	G	A	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	110670807	rs7441380	G	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	110678925	rs11098044	T	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	110678979	rs146158558	T	TTTTAA	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;MQ=60.72;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	110679002	rs7437142	G	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	110681618	rs4382037	C	T	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	110737389	rs2276326	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	110737549	rs6828254	G	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	110745095	rs13109228	G	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	110754499	rs12513108	T	C	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	110758551	rs4698750	G	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	110758769	rs4698795	A	G	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	110765361	rs7681770	T	G	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	110788739	rs2347130	G	A	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	110791361	rs2347131	G	A	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	110791413	rs2347132	C	T	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr4	110791543	rs2347133	C	T	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	110914427	rs4698803	A	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	110914628	rs11569079	C	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	111398208	rs10004516	A	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	111409705	rs1126483	T	C	5488.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=-0.103;QD=25.29;ReadPosRankSum=-0.788;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:2,215:0.99:217
chr4	111437103	rs2348432	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.31;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	111437127	rs2348433	A	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	111454153	rs671841	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	111474659	rs12501626	C	A	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	111781650	rs10213399	C	T	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	113066831	rs10002700	G	A	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	113107829	rs371585740	CT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.479;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr4	113436044	rs901474	T	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	113468564	rs78336146	C	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	113483446	rs6838559	C	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	113502707	rs58897804	T	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	113539969	rs7696816	T	C	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	113545165	rs6853745	T	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	113549989	rs12054518	G	A	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	113554385	rs13104310	A	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	113569135	rs13136737	G	T	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	113578326	.	TTG	T	86	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.7837;HP=3;HapScore=2;MGOF=15;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=86;QD=29.6666666667;SC=AGTCATAGTTTTGTGTGTGTG;SbPval=0.7;Source=Platypus;TC=3;TCF=2;TCR=1;TR=3;WE=113578335;WS=113578316;set=Platypus	GT:AD:AF:DP	0/1:0,3:1.00:3
chr4	114081490	rs436855	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	114171154	rs362495	A	G	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	114185878	rs11452087	C	CA	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=0.326;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr4	114254454	.	A	ATG	200.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.447;QD=15.42;ReadPosRankSum=0.778;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr4	114257201	rs3736575	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	114260492	rs2272231	G	T	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	114260538	rs2272230	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr4	114267023	rs9968405	G	A	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	114269552	rs2272235	G	A	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	114276884	rs3733615	A	G	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	114278277	rs3733617	C	T	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	114286357	.	A	ATG,ATGTG	850.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=0.453;QD=29.34;ReadPosRankSum=-0.434;SOR=0.843;set=HC	GT:AD:AF:DP	1/2:3,9,17:0.31,0.59:29
chr4	114294308	rs2293324	T	C	4960.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	114309839	rs6533681	C	T	279.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	114310106	rs70961814	C	CTG	349.37	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr4	114421712	rs17446453	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	114426077	rs5861139	CA	C	672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.690;QD=10.51;ReadPosRankSum=0.608;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:17,47:0.73:64
chr4	114426315	rs4834348	G	T	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	114429407	rs11098193	C	T	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	114458402	rs734348	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	115544714	rs6851610	A	G	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr4	115586696	rs4833463	A	G	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	115589159	rs6831964	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	115589302	rs11098261	A	G	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	119035948	rs5861378	T	TC	6331.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr4	119064668	rs3749506	G	A	112.19	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr4	119161619	rs641962	A	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	119161795	rs617430	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	119174563	rs609512	T	A	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	119174640	rs5861382	CT	C	273.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	119200274	rs658642	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	119217114	rs788665	C	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	119273712	rs13119545	C	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	119435862	rs202102941	A	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.17;QD=25.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	119609039	rs9968326	G	A	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	119609182	.	CTT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.908;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr4	119613045	rs6821350	T	G	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	119613381	rs11387432	C	CT	143.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.875;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr4	119615543	rs13111664	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	119625000	rs3733517	A	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	119625273	rs298995	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	119653822	rs2046779	G	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	119659284	rs7653962	T	A	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.84;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	119674051	rs71595318	G	GA	2160.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.019;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.256;QD=20.78;ReadPosRankSum=0.613;SOR=1.354;set=HC	GT:AD:AF:DP	1/1:5,99:0.95:104
chr4	119689549	rs11412557	C	CTT	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=0.527;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr4	119736598	rs6843524	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	119947961	rs70944826	AAAG	A	9337.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr4	119947985	rs12645298	G	C	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	119950975	rs34286363	A	ATT	1192.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.30;ReadPosRankSum=0.501;SOR=0.137;set=HC	GT:AD:AF:DP	1/1:5,51:0.91:56
chr4	119951647	rs7698598	A	G	12822.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr4	120071926	rs6853794	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	120133549	rs12644283	T	G	7339.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr4	120133712	rs6851130	G	A	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	120177522	rs7668372	G	T	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	120177708	rs7668423	C	T	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	120181724	rs35372126	A	G	5863.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr4	120194718	rs35610634	G	GT	2281.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr4	120220085	rs111948904	A	AAAAC	1463.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	120221425	rs62328407	C	G	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	120241849	rs4834770	A	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	120241902	rs1799883	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	120243336	rs5861422	TA	T	5060.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	120243389	rs5861423	A	ACTACT	1776.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	120243417	rs5861424	T	TTC	1031.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	120243419	rs1973598	A	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	120265438	rs4440203	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	120463856	rs2622497	A	C	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	120528327	rs3733526	G	A	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	120528524	rs10536068	ATCT	A	1079.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	120550059	rs11342908	GC	G	1908.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	120550125	rs10639733	A	AGGC	1945.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:5,78:0.94:83
chr4	120550144	rs2953291	A	G	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	120983259	rs2908989	T	C	7866.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr4	121631375	rs71597093	G	GAT	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.56;ReadPosRankSum=0.701;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr4	121698199	rs3804163	G	A	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	121702270	rs3761721	T	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	121702634	rs56402218	T	C	216.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	121706201	rs12499000	A	G	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	121706397	rs75436862	G	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	121719584	rs66792327	T	TA	904.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	121720771	rs1511309	T	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	121720941	rs4833676	C	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	121720960	rs4833677	C	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	121738049	rs343192	T	C	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	121738182	rs237212	C	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	121739667	rs146268537	T	A	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	122137662	rs7663440	T	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	122148787	rs2044970	A	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	122250734	rs2302310	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	122254119	rs33977434	G	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	122257942	rs4558890	A	C	6541.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.75;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	122257945	rs143184159	T	C	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=1.218;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	122257950	rs2302309	A	G	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	122258059	rs72668953	G	A	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	122261495	rs2276956	C	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	122261596	rs12651331	A	T	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	122261785	rs2276955	C	T	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	122590883	.	TA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.629;QD=1.41;ReadPosRankSum=0.801;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:75,27:0.26:102
chr4	122599447	rs13109053	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	122604496	rs11942224	T	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	122617493	rs2306413	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	122681373	rs4342205	T	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	122683007	rs4370153	G	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	122687238	rs13108419	A	G	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	122687491	rs4833772	G	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	122722693	rs3811742	C	G	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	122732899	rs4295291	A	G	172.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	122735225	rs141260260	C	CTTA	927.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	122737487	rs35942869	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=1.477;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr4	122739183	rs3217772	C	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	122742217	rs769242	T	C	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr4	122749436	rs2706793	G	T	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	122760968	rs12510839	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	122776067	rs4833236	A	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	122791601	rs2271176	G	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	122824052	rs11732666	C	T	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	122828794	rs951974	T	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	122831281	rs1507993	C	T	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	122833314	rs906496	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	122833379	rs906495	T	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	122872719	rs1396082	G	A	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	123108762	rs7670081	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	123113352	rs72687029	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	123140739	rs6534345	G	C	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	123184827	rs45515895	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	123185682	rs7664976	C	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	123188206	.	ATTTTT	A	526.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.12;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	123280860	rs1127348	T	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	123283163	rs33976078	AAT	A	1759.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	123301420	rs45592737	A	G	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	123377482	rs2069763	C	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	123838758	rs12648093	A	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	123843716	rs13134412	T	C	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	123854495	rs1563706	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	123868279	rs11098682	G	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	123949556	rs1472949	G	A	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	124323738	rs300574	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	124323783	rs300575	G	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	126238924	rs6847454	A	T	9463.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr4	126239986	rs1039808	C	T	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr4	126240510	rs2940779	T	C	7521.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr4	126241871	rs2710555	C	T	8947.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr4	126315034	rs925243	T	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	126315282	rs925242	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	126329526	rs10518464	C	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	126329789	rs958415	T	C	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	126335978	rs4605670	G	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	126336990	rs10010000	G	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	126337555	rs7675556	A	G	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	126355609	rs7656135	T	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	126369872	rs988863	G	C	10566.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr4	126373789	rs12650153	G	A	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	126384905	rs10010645	A	C	141.94	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr4	126389627	rs6814158	A	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	126390010	rs35304021	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	126390022	rs34927272	A	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	126397321	rs17009761	C	T	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	126400825	rs1506361	G	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	126412575	rs1014866	A	G	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	128544696	rs4834207	A	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	128688444	rs3214038	C	T	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	128722894	.	A	T	128.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr4	128812230	.	GT	G	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.887;QD=1.06;ReadPosRankSum=-1.736;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr4	128816052	rs41278097	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	128942189	rs59963623	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.615;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr4	129012754	.	A	AT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=6.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-0.356;SOR=0.075;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr4	129043593	.	G	GT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.204;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr4	129805716	rs167618	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	129867280	rs10028124	T	A	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	129873433	rs10857134	A	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	129878342	rs35006492	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	129961486	rs149385189	G	GC	1266.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	133367588	rs1827132	T	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	133367655	rs1827133	G	A	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	133368361	rs70948202	T	TC	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	134074058	rs3749589	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	134076285	rs2271172	C	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	134085208	rs4461537	C	T	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	135120965	.	T	C	686.77	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	139100372	rs4479754	C	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	139103366	rs10016559	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	139140388	rs10025342	G	A	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr4	139482958	rs7694744	G	T	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=27.60;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	139483177	rs7679047	T	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	140005294	rs4863628	A	G	13969.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr4	140039107	rs60424237	C	CA	305.86	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr4	140058849	rs62623564	A	T	7686.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr4	140188094	rs3208941	C	T	7358.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr4	140216412	rs6816703	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	140263849	rs11944434	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	140265237	rs116034207	G	A	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	140270875	rs2044810	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	140308984	rs998310	C	A	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	140375296	rs13128486	C	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	140417471	rs4863655	G	T	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	140417671	rs4863656	G	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	140625323	rs925424	A	G	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	140651584	rs5862430	TCTG	T	7804.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr4	140810334	rs3733381	T	C	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.69;SOR=1.624;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	140810637	rs11100342	C	T	5178.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:4,188:0.98:192
chr4	140810638	.	GGCT	G	107.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=6.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-2.522;SOR=1.647;set=HC	GT:AD:AF:DP	0/1:181,17:0.09:198
chr4	140811063	.	TTGCTGCTGCTGC	T	3000	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=22;NF=13;NR=61;PP=3000;QD=20;SC=TTGAGTGCTGTTGCTGCTGCT;Source=Platypus;TCF=29;TR=74;WE=140811104;WS=140811053;set=Platypus	GT:AD:AF:DP	1/1:60,74:0.55:134
chr4	140811083	rs373804063	GC	G	6855.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=5.936;MLEAC=2;MLEAF=1.000;MQ=61.93;MQRankSum=1.390;QD=36.86;ReadPosRankSum=-0.345;SOR=0.497;set=HC	GT:AD:AF:DP	1/1:7,179:0.96:186
chr4	140811085	rs58287721	TGCTGCTGCTGC	T	6353.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=5.890;MLEAC=1;MLEAF=0.500;MQ=61.93;MQRankSum=1.760;QD=36.31;ReadPosRankSum=0.727;SOR=0.456;set=HC	GT:AD:AF:DP	1/1:8,167:0.95:175
chr4	140811096	.	C	T	2965	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=28;NF=73;NR=67;PP=2965;QD=20;SC=GCTGCTGCTGCTGCTGCTGCT;SbPval=0.56;Source=Platypus;TC=171;TCF=88;TCR=83;TR=140;WE=140811104;WS=140811053;set=Platypus	GT:AD:AF:DP	1/1:31,140:0.82:171
chr4	140811135	rs3733382	T	C	8102.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	141290574	rs2668577	C	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	141311960	rs358329	T	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	141321425	rs2252427	A	G	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	141372485	rs6536966	T	C	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	141380784	rs114995586	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.39;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	141383034	rs10644682	T	TAC	857.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.589;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.011;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:21,41:0.66:62
chr4	141448595	rs372089965	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-1.061;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr4	141448705	.	T	TA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=3.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=1.073;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr4	141458485	rs882930	T	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	141489262	rs34540819	CGTGT	C	272.74	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=34.09;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	141543997	rs1560440	G	A	4595.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	141549393	rs2291711	C	A	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	141554949	rs10002459	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	141555062	rs6851737	G	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	141580561	rs3886094	C	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	141590043	rs111636015	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	141677006	rs70943501	A	AG	2295.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	141771715	rs78877852	G	T	404.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=0.755;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,20:0.91:22
chr4	141866754	rs71584389	ATACATATATATAC	A	353.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.30;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	141868736	rs2321687	G	T	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	141869062	rs6857782	C	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	141870648	rs4956494	G	A	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	141924720	rs200083054	TACACACACAC	T,TAC	872.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.83;QD=39.67;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:0,7,15:0.32,0.68:22
chr4	141927365	rs138771695	CATATATATACACATATATATGTGTATGTAT	C	1520.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	141927449	.	TAC	T	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.281;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:86,13:0.13:99
chr4	141940074	rs4245936	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	141940234	.	A	G	215	.	AC=2;AF=1.00;AN=2;BRF=0.06;FR=1.0000;HP=2;HapScore=2;MGOF=272;MMLQ=28;MQ=60.0;NF=2;NR=12;PP=215;QD=17.8408008962;SC=ATATATATATATGGAACTTTA;SbPval=0.61;Source=Platypus;TC=14;TCF=2;TCR=12;TR=14;WE=141940242;WS=141940224;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	142152686	rs114880185	A	G	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	142153856	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.150;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr4	142640462	rs1493013	CC	TT	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	142640538	rs2254514	T	C	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	142640637	rs2857261	A	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	142651159	rs12510030	T	C	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	142651265	rs17007610	T	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	142949864	rs34280694	A	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.82;SOR=2.701;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	143003155	rs11446749	G	GA	1345.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	143007197	rs336325	C	T	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	143007419	rs336324	A	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	143007460	rs336323	T	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	143044666	rs2645786	A	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	143130034	rs1907123	A	T	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	143130219	rs1994217	T	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	143181748	rs1907111	T	A	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=-0.025;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr4	143226768	rs2627808	G	T	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	143226784	rs2636640	G	A	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	143305189	rs11944462	A	T	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	143305343	rs11944503	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	143326271	.	T	TGGGG	198.80	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	144124492	rs4234886	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	144125549	.	C	CT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.389;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.318;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:37,20:0.35:57
chr4	144130979	rs148666231	A	AT	106.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	144135718	rs4285045	G	A	5875.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	144136193	rs10000911	T	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	144264722	rs300919	T	C	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	144355290	rs139323761	G	C	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	144447630	rs7694156	T	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	144456124	rs6818251	A	G	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	144459637	rs4690724	T	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	144466050	rs7692376	A	G	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.584;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	144467104	rs13139128	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	144469383	rs2088415	A	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	144471378	rs70953739	C	CT	520.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=17.042;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.64;ReadPosRankSum=-0.320;SOR=2.453;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chr4	144471402	rs1979776	T	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:3,21:0.88:24
chr4	144617842	rs1545437	G	T	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	144618610	rs1034494	G	C	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	144620758	rs61427459	C	T	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	144621199	rs11100802	A	G	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	144621779	rs55935372	A	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	144801503	rs368319263	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=5.414;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-10.606;QD=0.43;ReadPosRankSum=-2.519;SOR=1.588;set=HC	GT:AD:AF:DP	0/1:104,10:0.09:114
chr4	144801510	rs199587133	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.008;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-11.112;QD=1.13;ReadPosRankSum=-2.085;SOR=1.348;set=HC	GT:AD:AF:DP	0/1:114,11:0.09:125
chr4	144801522	rs200725864	C	T	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.009;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-8.366;QD=2.28;ReadPosRankSum=-3.611;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:134,23:0.15:157
chr4	144801662	rs1132785	C	G	6667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-9.225;QD=15.54;ReadPosRankSum=-0.797;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:243,186:0.43:429
chr4	144801671	rs146400730	A	C	3241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-9.206;QD=8.15;ReadPosRankSum=-1.931;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:228,170:0.43:398
chr4	144801728	rs201075956	CA	TG	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.912;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-10.035;QD=7.59;ReadPosRankSum=-1.162;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:93,31:0.25:124
chr4	144811428	rs4095436	A	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	144811470	rs4095435	A	G	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	144824194	rs138724961	T	C	4212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.298;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=50.61;MQRankSum=-23.884;QD=6.41;ReadPosRankSum=2.810;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:407,250:0.38:657
chr4	144824269	rs1899967	C	T	14886.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.61;QD=36.58;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr4	144824269	.	CTCCC	TTCCC,TTCCT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=22;MQ=50.08;NF=159,85;NR=240,148;PP=1617,2944;QD=4.13977747506;SC=CAGAAAATAACTCCCTGCTAC;SbPval=0.51;Source=Platypus;TC=400;TCF=159;TCR=241;TR=399,233;WE=144824281;WS=144824259;set=Platypus	GT:AF:DP	0/1:1.00:400
chr4	144824273	rs6818201	C	T	5452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=4.155;MLEAC=1;MLEAF=0.500;MQ=51.78;MQRankSum=17.406;QD=14.27;ReadPosRankSum=0.152;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:140,242:0.63:382
chr4	144824308	rs202179013	TG	CC	1653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.495;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.38;MQRankSum=-10.488;QD=9.19;ReadPosRankSum=-1.853;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:130,50:0.28:180
chr4	144824346	rs4091835	T	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.816;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.573;MLEAC=1;MLEAF=0.500;MQ=53.86;MQRankSum=-5.007;QD=1.09;ReadPosRankSum=-2.899;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr4	144917514	rs1980037	A	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	144918900	rs1849110	G	A	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	144920480	rs7661933	A	T	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	144920596	rs7683365	G	A	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	144920638	rs7662277	A	T	1360.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.232;MLEAC=2;MLEAF=1.000;MQ=58.12;MQRankSum=-0.400;QD=25.67;ReadPosRankSum=-0.604;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr4	144921607	rs1849119	C	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	144938033	rs5862681	A	AT	1464.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.43;QD=34.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	144938081	rs28373876	C	T	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.85;QD=27.20;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	144938120	rs4561879	TG	CC	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=48.44;QD=43.69;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	145020647	rs13135548	C	T	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	145020658	rs13110331	A	G	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	145038318	rs62334650	C	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	145040784	rs62334651	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	145040962	rs6857144	CA	GT	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	145040999	rs62334652	T	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	145041011	rs70953778	AC	A	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	145041686	rs4867	A	G	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	145041707	rs7658293	CT	AC	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=42.66;QD=42.99;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	145041720	rs7682260	A	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.25;QD=31.93;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	145041741	rs4449373	T	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.66;QD=42.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	145041750	rs45468202	A	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.34;QD=39.38;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	145573954	rs3215015	GA	G	1608.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.341;QD=21.17;ReadPosRankSum=-0.317;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:2,74:0.97:76
chr4	146046138	rs4835203	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	146048583	rs1378314	T	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	146064660	rs145377154	G	A	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	146065006	rs9991890	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	146073870	.	CTT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.835;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr4	146085437	.	ATCAT	A	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr4	146436286	rs377610507	CTG	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.23;ReadPosRankSum=-0.469;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr4	146700781	rs9308196	A	T	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	146767313	rs34221205	C	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	146770389	rs71973224	GT	G	558.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr4	146806762	rs200880217	CAGAGAGAGAGAG	C	1149.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=9.700;MLEAC=2;MLEAF=1.000;MQ=60.87;MQRankSum=0.462;QD=41.06;ReadPosRankSum=1.610;SOR=4.322;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr4	147177868	rs34063596	T	TC	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	147177986	.	T	C	2703.77	.	AC=2;AF=1.00;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	147213912	rs4516736	T	C	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	147214029	rs12711434	C	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	147425114	rs7439061	A	T	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	147431302	rs6816737	G	A	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	147560457	.	T	TGGC	3115.73	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:8,83:0.91:91
chr4	147560692	rs1504360	T	A	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	148457005	rs113823592	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.418;QD=0.47;ReadPosRankSum=0.109;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr4	148560357	rs2654935	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	148574961	.	C	CA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.079;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr4	148575590	.	C	G	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.970;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:141,45:0.24:186
chr4	148589677	rs2718454	C	T	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	148591769	rs2036502	G	T	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	148601729	rs7666065	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	148778685	rs11410393	G	GT	336.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	148787669	rs4240341	G	A	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	148796464	rs7663294	C	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	148800299	rs13147854	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	148827697	rs35780665	T	TA	1287.25	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:10,67:0.87:77
chr4	148827747	rs12509618	A	C	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	148827973	rs11099672	A	G	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	148831070	rs4627844	A	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	149356516	rs5525	A	G	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	149357475	rs5522	C	T	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	151120062	.	A	AC	63	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5001;HP=12;HapScore=3;MGOF=19;MMLQ=26;MQ=58.74;NF=1;NR=5;PP=63;QD=12.0;SC=CCCTTTCAGCACCCCCCCCCC;SbPval=0.13;Source=Platypus;TC=16;TCF=8;TCR=8;TR=6;WE=151120070;WS=151120052;set=Platypus	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	151145587	.	A	T	302.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr4	151161490	rs6838238	T	C	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	151161502	rs6813035	G	T	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	151177340	rs13152819	C	T	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	151177340	.	CC	TG	822	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=26;MQ=60.0;NF=3;NR=31;PP=822;QD=25.749055143;SC=CACCCCCCACCCTCCTCCCGC;SbPval=0.8;Source=Platypus;TC=39;TCF=5;TCR=34;TR=34;WE=151177349;WS=151177330;set=Platypus	GT:AD:AF:DP	1/1:5,34:0.87:39
chr4	151177341	rs13152820	C	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	151177428	rs13101461	C	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	151177432	rs13101258	A	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	151231371	rs1813134	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	151408800	rs7674989	T	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	151505322	rs13105060	T	A	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	151511715	rs4401437	T	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	151656589	rs1993109	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	151719263	rs1129998	A	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	151765243	rs186080	G	A	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	151829659	rs1201207	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	152024326	rs4696658	T	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	152048936	rs11099782	A	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	152053408	rs7664483	G	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	152070633	rs3792611	T	A	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	152201018	rs148861921	G	GCAGGT	3725.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	152201204	rs1875308	A	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	152203664	rs6849871	C	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	152212603	rs2407221	T	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	152583907	rs11378262	C	CT	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=1.826;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr4	152626515	rs113829752	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.196;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr4	153267968	rs2714803	A	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	153549745	rs138358407	C	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.59;QD=22.86;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	153573692	rs147269679	G	A	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	153750918	rs10010297	G	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	153793489	rs35670437	CT	C	545.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	153793528	rs28473137	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	153870242	.	GTAATAA	G	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=4.415;MLEAC=1;MLEAF=0.500;MQ=62.85;MQRankSum=-1.112;QD=4.90;ReadPosRankSum=-1.035;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr4	153870273	.	TAATAAG	T	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.500;MQ=62.59;MQRankSum=-0.489;QD=3.47;ReadPosRankSum=2.941;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr4	153870322	rs12642251	A	C	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.75;QD=44.02;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	153870355	rs12651510	T	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	153881835	rs3811834	C	T	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	153884092	.	G	GGT	741.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=0.220;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:12,35:0.74:47
chr4	153896358	rs3811833	C	T	6960.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	153897770	rs3811832	G	A	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	154091111	rs34284701	C	T	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	154315340	rs9999596	T	C	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	154330064	.	G	GTATATA	241.77	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	154336174	rs11099880	A	T	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	154544267	rs2289319	G	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	154553833	rs41280471	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	154553973	rs35897141	G	A	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	154624656	rs3804099	T	C	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	154631543	rs2405432	A	T	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr4	154641489	rs1439166	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	154644454	rs1456384	T	C	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	154709480	rs3810765	G	A	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	154709854	rs4643790	G	A	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	154709854	.	GCA	ACC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=37;NR=59;PP=2947;QD=20;SC=CTGCAGGTTGGCAGGGATGGG;SbPval=0.55;Source=Platypus;TC=97;TCF=38;TCR=59;TR=96;WE=154709864;WS=154709844;set=Platypus	GT:AD:AF:DP	1/1:1,96:0.99:97
chr4	154709856	rs6535952	A	C	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	155156207	rs7655799	G	A	5949.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	155158284	rs146298768	A	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	155161666	rs6535989	C	T	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	155218941	rs115559096	C	T	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	155219382	rs116029479	G	C	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	155219540	rs141467714	C	A	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	155219549	rs74321456	T	G	6969.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	155225784	.	A	AAAACAAAC	666.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	155241735	rs79535970	C	T	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	155243604	rs1352714	T	C	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	155244462	rs74430037	C	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=26.87;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	155249179	rs76750997	G	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	155250660	rs75602216	G	A	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	155250915	rs993975	G	C	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	155253011	rs72966161	A	T	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	155256205	rs6858712	G	A	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	155295154	rs140484732	CAAA	C	764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.49;ReadPosRankSum=1.755;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr4	155298643	rs75194430	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	155410409	rs13121403	A	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	155410909	rs35172627	A	G	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	155411104	rs6536016	A	C	12868.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:1,484:1.00:485
chr4	155411649	rs13130030	G	A	7022.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr4	155411939	rs17373874	A	C	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	155412464	rs13149269	C	T	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	155458728	rs7668014	C	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	155459194	rs7668818	A	T	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=25.88;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	155460097	rs62330409	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	155461113	rs7671792	T	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	155461687	rs62330410	A	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	155462148	rs7700005	A	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	155465535	rs62330413	A	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	155466869	rs62330417	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	155466935	rs11935584	T	C	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	155467187	rs11940724	A	G	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	155469959	rs11451354	G	GA,GAA	2240.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.19;ReadPosRankSum=0.967;SOR=0.602;set=HC	GT:AD:AF:DP	1/2:5,83,23:0.75,0.21:111
chr4	155508627	rs2070018	G	A	7371.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	155510224	rs7656433	A	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	155511897	rs2070011	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	155525970	rs1049636	G	A	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	155529474	rs2066860	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	156135676	rs1047214	C	T	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	156136027	rs2880415	C	T	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	156273768	rs2305050	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	156274606	rs33994283	CATT	C	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	156276076	rs3775248	A	G	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	156276096	rs3775249	G	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	156276289	rs2341894	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	156276317	rs2880181	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	156276433	rs2341893	C	T	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	156276742	rs34426198	ACT	A	242.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	156276788	rs6857158	G	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	156276841	rs6834126	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	156283302	rs6829123	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	156289900	rs3733390	C	T	5394.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	156296910	rs41280485	C	T	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	156617994	rs2306557	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	156632391	rs11944673	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	156634844	rs71605258	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	156680340	rs1459845	G	T	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	156706412	rs17033527	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	156706482	rs1459853	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	156757789	rs113590442	G	GA	81.86	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr4	156757818	rs1399046	A	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	156784970	rs932081	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	156787214	rs1399044	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	156787340	rs6848883	G	A	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	156826166	rs2137778	C	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	156832841	rs12502494	C	T	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	156839462	rs2292537	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	156847230	rs1543108	A	G	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	156847237	rs10714400	AG	A	1355.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	157557726	rs11943855	A	G	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	157563266	rs7658059	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	157684248	rs3815861	T	C	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	157700394	rs17035231	A	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	158065038	rs12507409	T	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	158142740	rs28585580	T	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	159076679	rs6830475	C	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	159076826	rs6830702	C	T	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr4	159538140	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.958;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr4	159568383	rs13111939	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	159590922	.	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-1.090;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr4	159618695	.	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.793;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr4	159620035	rs7679753	A	C	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	159640565	rs7666472	G	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	159780252	rs148251675	T	C	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	159836336	rs78052401	G	A	5774.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	159858736	rs11737459	T	A	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	159894250	rs619128	C	T	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	159894305	rs662473	T	C	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	160050068	rs200262378	TGG	T	129.94	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	160050073	.	G	T	23	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9999;HP=5;HapScore=4;MGOF=18;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=23;QD=28.8856062736;SC=ACATATGGGGGGTGTGTGTGT;SbPval=0.44;Source=Platypus;TC=4;TCF=3;TCR=1;TR=2;WE=160050081;WS=160050058;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr4	160107918	rs10014197	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	160114277	rs6834634	G	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	160162315	rs11944449	T	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	160225430	rs13103075	T	A	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	160251417	.	A	ATGTGTGTGTGTG	303.75	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	160251449	rs55734414	A	G	154.10	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	160260209	rs13127789	G	T	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	160271268	rs11320537	GT	G	887.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.341;QD=18.12;ReadPosRankSum=-0.021;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:3,46:0.94:49
chr4	160274180	rs10034898	G	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	160277276	rs1135004	C	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.73;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	162459299	rs4691769	T	C	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	162463660	rs60655417	G	GA	2016.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr4	162841814	rs5863499	T	TA	1810.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr4	164048199	rs4691895	G	C	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	164049916	rs1061075	A	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	164067105	rs28584666	T	A	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	164085425	rs4691896	T	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	164087954	rs936562	A	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	164415734	rs2276979	A	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	164435265	rs2304802	A	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	164436768	rs200483857	C	CT	150.37	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr4	164438523	rs12643109	G	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	164438790	rs140868699	TACAA	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	164440461	rs374376787	CT	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=1.292;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr4	164440581	rs1561736	T	C	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	164440743	rs4362779	T	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	164450255	rs372244193	A	AT	915.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr4	164466824	rs13130399	C	T	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	164466970	rs11726828	C	T	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	164621883	rs9308064	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	165118652	rs2288675	C	T	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	165118796	rs2288674	G	A	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	165878166	.	C	T	1975.77	.	AC=2;AF=1.00;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	165878609	rs3196673	T	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	165891214	rs201160598	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:59,58:0.50:117
chr4	165891229	.	C	T	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=47.12;MQRankSum=-4.446;QD=19.75;ReadPosRankSum=-2.135;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:42,47:0.53:89
chr4	165891236	.	A	G	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.13;MQRankSum=-4.442;QD=20.73;ReadPosRankSum=-2.039;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:40,43:0.52:83
chr4	165891247	rs201936482	A	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.03;QD=28.41;SOR=1.875;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	165891270	.	T	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.84;MQRankSum=-3.225;QD=17.29;ReadPosRankSum=0.772;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	165891273	.	A	G	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.924;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.84;MQRankSum=-3.225;QD=17.29;ReadPosRankSum=0.772;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	165891276	.	A	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.83;MQRankSum=-3.248;QD=16.17;ReadPosRankSum=1.225;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	165891278	.	C	CA	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.81;MQRankSum=-3.240;QD=17.34;ReadPosRankSum=1.489;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr4	166259161	rs12501541	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	166307262	rs11100610	T	C	137.81	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	166307302	rs12509669	G	A	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	166388825	.	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.498;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr4	166928911	rs12649793	C	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	166929276	rs3775321	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	166935465	rs56706178	A	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	167012241	rs33952157	GT	G	2011.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	167012250	rs33986267	T	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=41.98;SOR=2.970;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	167012381	rs2654492	G	A	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	167012480	rs2646914	T	C	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	167012506	rs2254420	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	167012543	rs2654493	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	167012574	rs17505943	T	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	167932327	rs2558141	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	169049106	rs10002305	T	C	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	169083694	rs6836994	A	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	169086441	rs4405979	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=25.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	169086540	rs33925175	CAA	C	679.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=11.964;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.652;QD=21.93;ReadPosRankSum=-1.171;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr4	169098914	rs477897	A	G	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	169105563	rs576690	A	G	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	169183789	rs6552581	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	169279170	rs497151	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	169282112	rs2684346	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	169282232	rs2684347	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	169282355	rs2684348	T	C	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	169292759	rs6829368	T	C	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.15;SOR=1.999;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	169299528	rs13110927	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	169299676	rs10517990	T	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	169301059	rs1489232	T	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	169311790	rs34009039	G	GT	54	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	169312798	rs150634123	A	AG	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.536;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:79,33:0.29:112
chr4	169312801	rs6840397	A	G	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.111;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=1.228;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:45,62:0.58:107
chr4	169315571	rs11337868	TA	T	1215.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	169315760	rs3749499	C	A	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	169317081	rs1826028	C	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	169317279	rs3857035	C	T	104.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	169317284	.	T	TA	75	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=15;HapScore=4;MGOF=13;MMLQ=20;MQ=60.0;NF=0;NR=5;PP=75;QD=15.6;SC=TGCTACTATTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=5;WE=169317292;WS=169317269;set=Platypus	GT:AD:AF:DP	1/1:2,5:0.71:7
chr4	169336662	rs4692661	T	C	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	169340639	rs1021318	C	A	743.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	169341435	rs2130145	A	G	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	169341608	rs141226900	TACACATACACACACACACAC	T	1522.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.19;QD=37.14;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	169369820	rs2712113	T	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	169369853	rs2712114	A	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	169374487	rs2634953	A	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	169392091	rs7680471	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	169393179	rs12505232	T	G	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	169393595	rs13149639	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	169393972	rs113626526	G	GA	2949.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	169432673	rs61051061	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	169432841	rs1806729	G	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	169433326	rs7655494	TG	CA	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	169433333	rs7673220	C	T	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	169433444	rs72695199	C	T	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	169602691	.	A	ATTTT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.35;ReadPosRankSum=-1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	169606649	rs62333891	C	A	8573.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr4	169612461	.	G	GT	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.681;QD=2.87;ReadPosRankSum=-0.798;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr4	169612528	rs4260495	C	T	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	169799448	rs62333013	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	169812313	rs6827082	T	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	169835048	rs1532651	C	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	169846255	rs3733656	T	C	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	169846359	rs66895777	GCT	G	3019.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	169847646	rs35375934	TA	T	375.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=20.87;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	169923363	.	CAAA	C	388.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=-0.869;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr4	169928842	rs2877380	G	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.61;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	169931268	rs28371817	G	A	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.14;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	169931274	rs2279038	G	A	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	169931288	rs2279039	T	C	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	169931326	rs67305871	CA	C	287.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=-1.762;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr4	170037323	rs10017472	G	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	170037572	rs3811813	G	A	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	170041864	rs147918956	T	TAAC	986.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	170077432	rs9312445	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	170077459	rs35455310	AT	A	411.80	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr4	170077540	rs10024401	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	170077789	rs10518039	A	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	170315496	rs4692721	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	170354836	rs7680152	C	T	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	170354873	rs13139925	T	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	170428352	rs11335570	G	T	274.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-1.140;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr4	170483153	rs62952760	T	A	79.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.97;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	170483483	rs34241464	TA	T	51	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=12.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	170501971	rs111989212	C	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	170581570	rs4692739	G	A	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	170584661	rs35801757	A	AT	63	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.30;ReadPosRankSum=1.150;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr4	170616918	rs2062609	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	170628524	rs9996636	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	170634408	rs1010713	A	G	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	170658944	.	CA	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.41;ReadPosRankSum=-0.846;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	170678993	rs11540095	T	C	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	172735897	rs3796654	C	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	172973421	rs1505494	G	A	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	172973423	rs10572855	CAG	C	1216.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	172973580	rs1505495	C	A	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	173232679	rs2136033	A	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	173232805	rs9312524	G	A	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	173873170	rs11322401	TG	T	1378.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:3,60:0.95:63
chr4	173930479	rs4696042	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	174090004	rs3733477	G	A	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	174217122	rs4696055	A	G	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	174310777	rs4695833	A	T	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	174310864	.	C	G	1657.77	.	AC=2;AF=1.00;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	174458022	rs3775588	T	A	6910.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr4	174458142	rs3775587	C	G	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	174537063	rs4413383	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	174537221	rs11726970	T	C	6007.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	174537356	rs34402795	T	A	9242.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=27.84;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr4	174537471	rs13103221	G	A	6304.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	174537658	rs62342044	C	T	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	175414234	rs13126570	T	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	175414246	rs2612694	A	G	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	175414278	rs34299544	G	C	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	175429213	rs3846298	C	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	175429370	rs5864277	GT	G	4976.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	175429808	rs3775977	G	A	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	175598334	rs6812439	T	C	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	175649861	rs1872548	T	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.51;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	175649873	rs3834804	GA	G	484.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.29;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	175688138	rs7696263	A	G	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	175688274	rs10551381	TACAC	T	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	176733450	rs62338073	G	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	176733452	rs113129787	G	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	177073026	rs4690661	G	A	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	177083166	rs2877924	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	177083333	rs12646277	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	177087322	rs4388031	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	177106009	rs28381989	TTCTC	T	10433.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	177113764	rs6857056	A	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	177113779	rs12502935	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	177113956	rs2291244	A	G	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	177136850	rs201956027	G	A	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	177137988	rs6827525	C	T	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	177142776	rs10032098	C	A	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr4	177143378	rs72706385	T	A	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	177143664	rs6553937	C	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	177605081	rs5864401	CTCA	C	8870.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	177608875	rs4529000	A	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	177650614	rs3836595	T	TA	362.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	178167282	rs1347894	G	A	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	178272748	rs1054753	G	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	178274565	rs2048074	A	G	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	178274694	rs10007075	T	G	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr4	178274750	rs13112358	C	T	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	178274835	rs13112390	A	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	178281754	rs1876268	G	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	178355668	rs4690521	C	G	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	178357566	rs71599314	A	ATAATTG	936.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	178359960	rs2228119	G	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	178361414	rs34241758	A	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	178363378	rs11131799	G	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	178882120	rs9994032	A	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	178882196	rs59355585	A	G	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	178887811	rs35244240	C	CTTTT	906.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;QD=45.34;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	178887815	rs28409849	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=40.62;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	178911873	rs17065497	G	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	183090306	rs28555566	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	183090436	rs28701836	A	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	183267728	rs33933747	TA	T	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.712;QD=9.92;ReadPosRankSum=-0.884;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr4	183268148	rs11373586	C	CG	607.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	183268174	rs6552554	C	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	183271186	rs10644033	G	GAA	165.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	183370056	rs11721730	C	T	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	183370244	rs35591339	AGCG	A	3683.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	183522021	rs141344153	C	CAT	235.14	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr4	183601594	rs11934254	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	183601847	rs2871328	T	C	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	183650026	rs5864796	GA	G	325.25	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:4,22:0.85:26
chr4	183652175	rs10866256	T	C	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	183659722	rs74988363	G	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	183664593	rs7676674	G	A	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	183665437	rs6835335	C	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	183673247	rs2309770	T	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	183674577	rs13130747	G	C	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	183694501	rs6848256	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	183814169	rs2070805	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.34;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	183815561	rs17331744	T	C	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	183815688	rs4742	A	G	5816.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	183836490	rs11730323	C	T	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	183838025	rs13114262	A	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	183838103	rs4371655	C	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	183838633	.	G	GGGGA	98.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	184170025	rs907357	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	184171187	rs10020261	T	C	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	184202148	rs11132174	G	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	184242959	rs6839940	C	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	184426526	rs6552675	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	184570723	rs58975219	TA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.310;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr4	184618936	rs62617790	G	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	184619035	rs111781155	CGT	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=2.245;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:32,5:0.14:37
chr4	184922669	rs3749534	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	184930289	.	G	GTT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.64;ReadPosRankSum=1.159;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr4	184932609	rs4862282	G	A	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	185012387	rs28495394	C	T	6077.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	185012398	rs4479748	T	C	6764.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:1,255:1.00:256
chr4	185038274	rs4642291	G	A	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	185074686	rs13147555	A	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	185310218	rs1131553	C	T	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	185312027	rs66641943	C	T	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	185340725	.	GA	G	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.667;QD=4.19;ReadPosRankSum=2.468;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr4	185550764	rs4647693	T	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	185583092	rs60624489	C	CTATT	3537.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	185587165	rs2463447	A	G	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	185599572	rs186382014	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	185612627	rs35926668	CT	C	80.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	185622046	rs11728389	C	T	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	185652147	rs3806796	G	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	185652201	rs7675046	G	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	185652223	rs200616790	AAC	A	107.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.935;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr4	185652224	rs11362720	AC	A	98.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.417;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr4	185681475	rs6825554	G	C	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	185683840	rs939040	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	185686948	.	AAC	A	604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.367;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:216,42:0.16:258
chr4	185694697	rs7691972	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	185697966	rs41278587	G	A	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	185701549	rs1803898	G	T	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	185701620	rs7680850	T	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	185735054	rs7676928	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	185736113	rs2280297	G	C	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	185772135	rs144295771	T	C	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	185772384	rs1032299	A	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	185859505	rs6821859	T	G	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr4	185940461	rs4862491	C	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	185941964	rs6841359	G	A	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	185999348	rs10023344	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	185999543	rs6841061	G	A	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	185999587	rs6818170	T	A	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	186084196	rs5864930	G	GA	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;MQ=60.47;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	186085427	rs34135937	C	CT	217.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-0.648;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr4	186091487	rs6820332	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	186097045	rs6855305	C	T	8618.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr4	186097219	rs370181930	C	CA	1189.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=5.416;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.83;ReadPosRankSum=0.297;SOR=0.102;set=HC	GT:AD:AF:DP	1/1:4,56:0.93:60
chr4	186097284	rs8180220	T	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	186168387	rs3108252	T	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	186170358	rs3108229	G	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	186188373	rs57930723	TA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.025;QD=0.70;ReadPosRankSum=-2.494;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr4	186208975	rs34265529	A	AG	163.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	186288457	rs138875428	C	CT	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=1.757;SOR=1.453;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr4	186320666	rs11287696	TA	T	789.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	186321067	rs1053218	C	T	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	186321447	rs3733646	C	G	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	186323209	rs3733645	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	186323593	rs6552880	C	T	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	186324841	rs13126680	T	A	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	186336583	rs10032989	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	186339584	rs10003160	A	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	186347055	rs2289720	G	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	186347073	rs11132303	G	C	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	186347092	rs10866275	T	C	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	186357523	rs7697970	C	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	186361876	rs4476640	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	186366315	rs2120414	T	C	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	186366809	rs6833872	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	186370676	rs35349112	T	TA	373.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.114;MLEAC=2;MLEAF=1.000;MQ=60.80;MQRankSum=0.728;QD=15.57;ReadPosRankSum=-0.039;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:4,20:0.83:24
chr4	186378790	rs4279261	T	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	186379104	rs7664578	T	C	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.02;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	186379371	rs7687202	G	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	186380315	rs34396844	A	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	186427871	rs2306706	A	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	186456617	rs4862545	A	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	186508723	rs3186	G	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr4	186551624	rs1471794	T	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	186568566	rs60210360	C	CT	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=6.972;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=0.944;QD=10.57;ReadPosRankSum=-0.660;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:10,40:0.80:50
chr4	186572791	rs4862557	C	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	186577592	rs35071718	G	C	213.03	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	186577594	rs35560526	CT	C	204	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=1.737;SOR=1.627;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr4	186997643	rs1568358	C	G	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	187026395	rs73025977	C	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	187026828	.	C	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.87;ReadPosRankSum=0.593;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr4	187072887	rs2276916	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	187072932	rs2276914	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	187073000	rs2276913	A	G	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	187073030	rs2276912	T	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	187074833	rs4862650	A	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	187075474	rs6552958	G	A	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	187077027	rs55822915	C	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	187077206	rs4862653	A	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	187077393	rs7670550	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	187077437	rs13114283	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	187078785	rs2276924	A	G	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	187078866	rs2276922	C	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	187078938	rs2276920	G	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	187079047	rs2276919	A	G	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	187083964	rs71593679	CT	C	466.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.870;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.734;QD=9.33;ReadPosRankSum=2.307;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:6,44:0.88:50
chr4	187088665	rs55700071	CAA	C	119.82	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	187093018	rs4241814	G	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	187113041	rs1055138	C	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	187122355	rs3736456	T	C	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	187149540	rs1912826	G	A	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	187158034	rs3733402	G	A	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	187159282	rs4253256	G	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	187171355	rs4253299	A	G	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	187178473	rs4253325	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	187178599	rs4253326	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	187179210	rs925453	T	C	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	187519206	rs1280097	C	G	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	187530313	rs4862722	C	T	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	187538851	.	A	AT	1504.73	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	187584771	rs172903	C	G	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	187627659	rs200130748	TA	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-3.135;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:85,26:0.23:111
chr4	187627792	rs11939575	T	C	7138.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	187628398	rs1877731	C	G	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	187629140	rs367863	G	C	8070.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr4	187629497	rs458021	G	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	187629538	rs3733413	C	T	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	187629770	rs3733414	A	C	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	189063361	rs61461219	CGT	CGTGT,C	387.82	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	0/1:0.68:25
chr4	190329166	rs10622647	G	GCACACACA	793.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.71;QD=39.69;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	190394938	rs147390696	CAAG	C	1489.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	190396182	rs114569255	G	A	5220.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	190396450	.	C	A	187.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr4	190876195	rs7684300	C	T	2848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.233;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=39.586;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-15.992;QD=7.68;ReadPosRankSum=-6.847;SOR=2.081;set=HC	GT:AD:AF:DP	0/1:275,96:0.26:371
chr4	190876204	rs3207892	G	A	3057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.258;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=26.547;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-17.114;QD=7.59;ReadPosRankSum=-5.185;SOR=1.653;set=HC	GT:AD:AF:DP	0/1:290,113:0.28:403
chr4	190876242	rs1061653	G	A	5477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.870;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=13.421;MLEAC=1;MLEAF=0.500;MQ=53.12;MQRankSum=-14.383;QD=12.51;ReadPosRankSum=1.050;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:212,226:0.52:438
chr4	190876256	rs140599307	C	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=9.796;MLEAC=1;MLEAF=0.500;MQ=52.45;MQRankSum=-2.426;QD=0.48;ReadPosRankSum=0.303;SOR=1.559;set=HC	GT:AD:AF:DP	0/1:358,61:0.15:419
chr4	190876278	rs199978807	G	A	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=13.012;MLEAC=1;MLEAF=0.500;MQ=51.92;MQRankSum=-2.128;QD=4.08;ReadPosRankSum=1.130;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:318,64:0.17:382
chr4	190876293	rs201142987	C	A	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=9.444;MLEAC=1;MLEAF=0.500;MQ=51.82;MQRankSum=-1.439;QD=1.29;ReadPosRankSum=1.495;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:297,61:0.17:358
chr4	190876319	rs77450681	A	T	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:140,150:0.52:290
chr4	190876349	rs199599460	C	T	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr4	190878452	rs372664630	T	C	696.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.696;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=6.979;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-3.396;QD=6.01;ReadPosRankSum=-0.658;SOR=2.288;set=HC	GT:AD:AF:DP	0/1:92,24:0.21:116
chr4	190878453	.	G	A	696.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.124;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=9.309;MLEAC=1;MLEAF=0.500;MQ=48.05;MQRankSum=-3.505;QD=5.90;ReadPosRankSum=-0.465;SOR=2.621;set=HC	GT:AD:AF:DP	0/1:94,24:0.20:118
chr4	190878463	rs62345288	T	G	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.368;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=42.984;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-7.669;QD=12.76;ReadPosRankSum=2.602;SOR=5.714;set=HC	GT:AD:AF:DP	0/1:79,52:0.40:131
chr4	190878485	rs62345289	G	A	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=62.135;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-8.798;QD=12.29;ReadPosRankSum=4.920;SOR=6.342;set=HC	GT:AD:AF:DP	0/1:98,52:0.35:150
chr4	190878506	rs12643923	C	T	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.306;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=96.175;MLEAC=1;MLEAF=0.500;MQ=52.27;MQRankSum=-12.346;QD=14.12;ReadPosRankSum=5.107;SOR=7.458;set=HC	GT:AD:AF:DP	0/1:99,68:0.41:167
chr4	190878538	rs34697501	A	AT	2987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.188;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=113.758;MLEAC=1;MLEAF=0.500;MQ=50.58;MQRankSum=-13.438;QD=11.49;ReadPosRankSum=-3.893;SOR=5.182;set=HC	GT:AD:AF:DP	0/1:151,109:0.42:260
chr4	190878569	.	T	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DP=576;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-2.597;QD=0.90;ReadPosRankSum=-2.769;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:526,50:0.09:576
chr4	190878571	.	G	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DP=587;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=53.48;MQRankSum=-2.707;QD=0.96;ReadPosRankSum=-2.555;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:535,52:0.09:587
chr4	190878596	.	G	A	1806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.635;ClippingRankSum=0.000;DP=827;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-3.641;QD=2.18;ReadPosRankSum=-1.053;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:734,93:0.11:827
chr4	190878597	rs62345290	C	T	10150.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:394,436:0.53:830
chr4	190878599	.	A	G	1923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.215;ClippingRankSum=0.000;DP=854;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=53.62;MQRankSum=-4.110;QD=2.25;ReadPosRankSum=-1.413;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:754,100:0.12:854
chr4	190878608	.	G	A	1997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.133;ClippingRankSum=0.000;DP=917;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-4.046;QD=2.18;ReadPosRankSum=-1.319;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:803,112:0.12:915
chr4	190878654	rs78653319	C	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=990;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=-3.251;QD=0.19;ReadPosRankSum=2.898;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:828,124:0.13:952
chr4	190878661	rs62345291	A	T	9486.77	.	AC=1;AF=0.500;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	0/1:524,460:0.47:984
chr4	190878729	rs201450141	A	G	3991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=31.349;MLEAC=1;MLEAF=0.500;MQ=51.03;MQRankSum=-11.771;QD=21.46;ReadPosRankSum=-6.067;SOR=2.704;set=HC	GT:AD:AF:DP	0/1:77,109:0.59:186
chr4	190878731	rs201154783	GG	CA	3991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.742;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=51.266;JOINED;MLEAC=1;MLEAF=0.500;MQ=50.27;MQRankSum=-11.514;QD=24.34;ReadPosRankSum=-5.840;SOR=4.121;set=HC	GT:AD:AF:DP	0/1:73,91:0.55:164
chr4	190878750	rs113800771	A	G	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.965;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=25.870;MLEAC=1;MLEAF=0.500;MQ=53.50;MQRankSum=-7.339;QD=6.28;ReadPosRankSum=0.118;SOR=4.481;set=HC	GT:AD:AF:DP	0/1:68,26:0.28:94
chr4	190878759	.	C	G	1038	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;HapScore=1;MGOF=37;MMLQ=28;MQ=41.15;NF=0;NR=52;PP=1038;QD=20.6302156259;SC=TAAAGATTTACTTAATAGCTT;SbPval=1.0;Source=Platypus;TC=131;TCF=13;TCR=118;TR=52;WE=190878767;WS=190878740;set=Platypus	GT:AD:AF:DP	0/1:79,52:0.40:131
chr4	190882973	rs78181874	A	G	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-10.010;QD=3.09;ReadPosRankSum=4.856;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr4	190947451	rs140385360	C	T	6690.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.50;MQRankSum=2.623;QD=26.14;ReadPosRankSum=0.110;SOR=1.210;set=HC	GT:AD:AF:DP	1/1:2,254:0.99:256
chr5	140532	rs12516846	T	C	3163.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:56,131:0.70:187
chr5	140636	rs12523402	G	A	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:64,141:0.69:205
chr5	140788	rs12516245	A	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:49,83:0.63:132
chr5	143041	rs11954199	T	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr5	143197	rs11949577	G	A	7281.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:159,331:0.68:490
chr5	143534	rs13436090	G	A	4832.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:98,209:0.68:307
chr5	145147	rs16900746	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr5	155137	rs11745772	G	A	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:59,85:0.59:144
chr5	155367	rs9312845	C	T	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr5	155629	rs9312850	C	G	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr5	155671	rs10076077	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr5	156180	rs6554829	G	A	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:61,91:0.60:152
chr5	156287	rs6554830	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:53,82:0.61:135
chr5	163205	rs3810870	G	C	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr5	163260	rs29674	A	C	7763.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.01;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	163260	.	ACCCTGC	CCCCTGC,CCCCTGG	1911	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.25;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=10;MMLQ=28;MQ=60.0;NF=118,74;NR=59,38;PP=839,1911;QD=4.93656052287;SC=GGACGGGGAGACCCTGCGCCC;SbPval=0.5;Source=Platypus;TC=178;TCF=119;TCR=59;TR=177,112;WE=163274;WS=163250;set=Platypus	GT:AF:DP	0/1:0.99:178
chr5	163266	rs3810867	C	G	3069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=-0.567;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:78,132:0.63:210
chr5	163769	rs29675	G	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr5	169409	rs79806378	T	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.371;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr5	171298	rs74765264	C	T	5093.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:162,237:0.59:399
chr5	171569	rs4956981	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,58:0.55:105
chr5	171643	rs13171103	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr5	173258	rs6893369	A	G	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr5	174240	rs6875054	GC	AA	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr5	174267	rs6862729	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr5	181660	rs7717970	T	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr5	181762	rs11133847	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr5	182291	rs11747660	A	G	5566.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:123,236:0.66:359
chr5	195318	rs6886707	T	C	7532.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:144,337:0.70:481
chr5	224397	rs35947614	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	230980	rs2288461	A	G	3487.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:81,146:0.64:227
chr5	231111	rs1126417	T	C	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:48,138:0.74:186
chr5	235548	rs10060259	T	C	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:81,139:0.63:220
chr5	251792	rs2162869	A	G	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr5	304462	rs72541621	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.52;MQRankSum=0.140;QD=16.71;ReadPosRankSum=0.892;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:12,30:0.71:42
chr5	311478	rs2244029	T	C	8112.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:216,369:0.63:585
chr5	314011	rs4957018	G	A	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.963;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-1.127;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:43,68:0.61:111
chr5	354051	rs2013782	T	C	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:57,108:0.65:165
chr5	368199	rs77111113	C	T	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr5	376618	.	G	GTGAGAACCGTGGGGTGAACGCGGGGAAACACAGGAAAGATGTGAATGAA	3323.73	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=92.33;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	413428	rs3215229	AT	A	1533.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:41,90:0.69:131
chr5	413591	rs11744075	G	A	6940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.21;ReadPosRankSum=0.684;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:71,175:0.71:246
chr5	413594	rs2261659	G	C	6881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.41;ReadPosRankSum=0.443;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:67,167:0.71:234
chr5	413639	rs2672731	G	C	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:38,93:0.71:131
chr5	421403	rs11741946	G	A	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:28,69:0.71:97
chr5	421455	rs11741954	G	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:35,99:0.74:134
chr5	421647	rs10068732	A	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	422752	rs10072668	T	C	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:42,96:0.70:138
chr5	422955	rs2292596	C	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.782;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:118,43:0.27:161
chr5	423906	rs55932239	G	A	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:27,74:0.73:101
chr5	428166	rs143087196	GC	G	2039.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:31,74:0.70:105
chr5	432905	rs72717420	C	A	9063.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:234,437:0.65:671
chr5	433952	rs2672724	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr5	434722	rs34453673	G	C	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:56,116:0.67:172
chr5	434981	rs2672725	G	C	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	434998	rs72717421	C	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr5	435055	rs2672779	G	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr5	442571	rs56146525	A	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr5	443059	rs77101200	G	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr5	453567	rs2672722	G	A	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-0.609;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:153,97:0.39:250
chr5	456915	rs2721010	A	G	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:113,71:0.39:184
chr5	457955	rs2251843	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr5	462465	rs890972	C	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,37:0.34:110
chr5	462556	rs2081942	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.796;SOR=0.167;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr5	464339	rs72698510	C	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr5	465164	rs76667725	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr5	465510	rs1035908	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	466075	rs10474780	G	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr5	466811	rs2434697	T	C	5469.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr5	472221	rs72698516	G	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr5	472951	rs890974	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr5	474940	.	CCT	C	603	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=3;MGOF=27;MMLQ=24;MQ=59.01;NF=9;NR=2;PP=603;QD=59.3891170215;SC=GAGGCGGAGACCTGGAGGGAG;SbPval=0.61;Source=Platypus;TC=11;TCF=9;TCR=2;TR=11;WE=474953;WS=474930;set=Platypus	GT:AD:AF:DP	0/1:0,11:1.00:11
chr5	474945	.	AG	A	204	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=5;HapScore=3;MGOF=27;MMLQ=19;MQ=59.12;NF=9;NR=2;PP=204;QD=21.2727272727;SC=GGAGACCTGGAGGGAGAGGAG;SbPval=0.75;Source=Platypus;TC=13;TCF=10;TCR=3;TR=11;WE=474953;WS=474930;set=Platypus	GT:AD:AF:DP	1/0:2,11:0.85:13
chr5	475104	rs2247114	A	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	475346	rs2247107	A	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr5	475621	rs55720119	T	TG	604.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr5	475626	rs41282625	C	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr5	476353	rs2230437	C	T	6013.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:142,256:0.64:398
chr5	476530	rs2244240	C	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	476848	rs890976	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.390;SOR=1.298;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr5	476910	rs890977	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	477303	rs890980	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr5	477634	rs4334924	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr5	477639	rs890981	G	A	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:25,6:0.19:31
chr5	478571	rs33925304	TG	T	374.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr5	478598	rs3734140	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.441;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr5	478655	rs3734141	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	479050	rs3836908	CCA	C	3945.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:37,100:0.73:137
chr5	479879	rs376525752	G	GC	2093.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	479905	rs890986	A	C	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=27.65;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	481610	rs6872510	T	C	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	482151	rs56916156	GC	G	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=0.594;QD=14.16;ReadPosRankSum=-0.391;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr5	482186	rs9885312	C	G	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	482653	rs3777230	T	C	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	483564	rs56098739	A	G	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:77,171:0.69:248
chr5	483675	rs56082422	G	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr5	485259	rs55989315	G	T	5707.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:170,264:0.61:434
chr5	488310	rs2303737	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:117,55:0.32:172
chr5	491826	rs11746373	G	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,38:0.31:122
chr5	619022	rs1617985	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr5	619333	rs1709531	T	C	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:112,58:0.34:170
chr5	665280	rs1697963	T	C	5667.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:144,260:0.64:404
chr5	666244	rs149807312	G	GGGGCACAGGCGACTTA	6213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.78;ReadPosRankSum=2.458;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:79,153:0.66:232
chr5	666323	rs1697964	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr5	677776	rs56352427	G	A	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	678062	rs450628	A	G	7685.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr5	711982	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=1;MGOF=49;MMLQ=24;MQ=54.08;NF=151;NR=315;PP=2962;QD=20;SC=CATTTCCCAGTACTATGCTCC;SbPval=0.39;Source=Platypus;TC=527;TCF=162;TCR=365;TR=466;WE=712007;WS=711972;set=Platypus	GT:AD:AF:DP	1/0:61,466:0.88:527
chr5	712030	rs62622378	T	C	622.78	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=44.48;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	712035	rs111978121	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=43.12;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	712045	.	C	CTCT	637.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=42.52;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	712054	rs112428723	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=42.55;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	712139	rs111351502	T	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.52;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	741736	rs61128505	G	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.46;QD=26.73;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	745275	rs436541	A	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.91;QD=29.89;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	745306	rs172870	A	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.11;QD=31.18;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	748477	rs3817066	A	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.58;QD=41.92;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	748482	rs3817065	G	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.44;QD=40.86;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	756307	rs367198	T	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.61;QD=25.78;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	766910	rs1809933	C	T	14223.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr5	767033	rs1809932	A	C	9394.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr5	796006	.	TGG	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=4;HapScore=1;MGOF=33;MMLQ=26;MQ=59.17;NF=237;NR=562;PP=2962;QD=20;SC=CCCAGTACTGTGGGCTCCCAT;SbPval=0.31;Source=Platypus;TC=1736;TCF=468;TCR=1268;TR=799;WE=796015;WS=795996;set=Platypus	GT:AD:AF:DP	1/0:937,799:0.46:1736
chr5	796047	rs33929417	CTG	C	45742.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=2312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-6.295;QD=20.93;ReadPosRankSum=-0.821;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:1002,1183:0.54:2185
chr5	796053	.	GCT	G	2966	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=1;MGOF=23;MMLQ=25;MQ=59.03;NF=234;NR=756;PP=2966;QD=20;SC=AGTACTGTGTGCTCCCATTTC;SbPval=0.57;Source=Platypus;TC=1792;TCF=441;TCR=1351;TR=990;WE=796072;WS=796031;set=Platypus	GT:AD:AF:DP	0/1:802,990:0.55:1792
chr5	796064	rs144616948	T	TCAGTACTGTATGCCCATTTCC	53885.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.942;ClippingRankSum=0.000;DB;DP=2247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-6.196;QD=24.22;ReadPosRankSum=-3.339;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:1016,1209:0.54:2225
chr5	801362	rs3867415	A	G	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:85,129:0.60:214
chr5	822172	rs56246496	A	C	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr5	824096	rs112980019	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:71,53:0.43:124
chr5	825160	rs1807037	A	C	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:207,143:0.41:350
chr5	834075	rs1260864	G	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	837556	rs28449575	T	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:357,127:0.26:484
chr5	840342	rs3822811	A	G	2721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.729;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:582,195:0.25:777
chr5	840506	rs7701283	C	T	5796.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:224,246:0.52:470
chr5	843702	rs3863147	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=51.34;MQRankSum=-4.102;QD=0.30;ReadPosRankSum=-1.129;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:136,21:0.13:157
chr5	878525	rs508016	T	A	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.911;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=8.149;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-18.503;QD=4.07;ReadPosRankSum=3.656;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:329,128:0.28:457
chr5	881404	.	C	T	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=5.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.432;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:100,52:0.34:152
chr5	891113	rs143448297	G	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr5	904395	.	G	GT	388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.535;QD=3.11;ReadPosRankSum=-1.310;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:83,42:0.34:125
chr5	981019	rs10065177	T	C	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	1009223	.	A	AGGGCGGGC	98.25	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	1009425	rs10060716	A	G	226.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	1034246	rs4975576	A	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	1035399	rs147352169	T	TAATG	5652.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr5	1035482	rs12657514	A	G	7923.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	1036616	rs367843383	CA	C	616.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.84;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	1036900	rs34309815	C	T	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	1036962	rs34413936	C	A	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	1038383	rs35320140	G	A	5324.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:111,233:0.68:344
chr5	1038425	.	C	T	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.452;ClippingRankSum=0.000;DP=389;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=5.26;ReadPosRankSum=1.644;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:275,112:0.29:387
chr5	1038526	rs3889678	A	G	10001.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr5	1052360	rs3810854	C	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	1052390	rs114414556	G	A	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:31,80:0.72:111
chr5	1052735	rs4046186	GGAGCA	G	730.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	1057615	rs2241606	A	G	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:104,230:0.69:334
chr5	1057782	rs12108965	T	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	1060400	rs4975568	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	1060634	rs4246750	C	T	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	1060654	rs4246749	G	A	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	1060685	rs2241608	G	A	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	1063187	rs6863419	T	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	1065290	rs4362981	A	G	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=44.32;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	1065298	rs55643147	GAGGGGACACTGAGGAGACACAC	G	4082.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	1065399	rs737154	C	T	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=27.32;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	1065683	rs56078134	A	C	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	1065689	rs13186367	C	T	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	1073689	rs10780095	C	T	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	1074560	rs12523242	A	C	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	1074818	rs41280366	C	T	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:54,94:0.64:148
chr5	1074921	rs7714914	G	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	1076459	rs11952124	G	T	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr5	1076519	.	TCAGGTTCCAGC	T	543	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=6;HapScore=1;MGOF=18;MMLQ=27;MQ=59.66;NF=1;NR=47;PP=543;QD=11.8541666667;SC=TCAGGCCCCCTCAGGTTCCAG;SbPval=0.82;Source=Platypus;TC=55;TCF=2;TCR=53;TR=48;WE=1076537;WS=1076509;set=Platypus	GT:AD:AF:DP	1/0:7,48:0.87:55
chr5	1076521	.	A	ATCCTGTGACCACCT	3141.73	.	AC=2;AF=1.00;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	1076524	.	T	TCCA	2572.73	.	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=3.729;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	1076526	.	C	CCTGTGACCA,CATCCTGTGACCA	2616.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=48;set=Intersection	GT:AF:DP	1/1:1.00:48
chr5	1078898	rs4975564	A	G	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	1081767	rs4526148	C	T	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr5	1085604	rs11133624	C	A	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	1093609	rs56276350	G	GGGGCGGGGACT	1601.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	1093860	rs6883411	CC	GT	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	1112138	rs376095927	C	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.253;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr5	1160464	rs77914620	T	TG	713.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,30:0.33:91
chr5	1208964	rs60992377	T	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr5	1209063	rs72709422	A	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr5	1212647	rs13180809	C	T	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	1213510	rs77928413	C	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	1214005	rs138649942	CCCT	C	3347.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	1214264	rs6554663	A	G	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	1216775	rs4975629	A	G	11915.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr5	1216900	rs35329108	G	A	6262.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:157,275:0.64:432
chr5	1219859	rs11746371	C	T	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,44:0.36:122
chr5	1219874	rs6869718	G	A	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	1221199	rs12513763	T	C	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	1225564	rs7728646	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr5	1225613	rs7704058	G	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr5	1225626	rs7728667	T	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:64,36:0.36:100
chr5	1225687	rs7705355	C	T	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.83;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	1225687	.	CT	TC,TT	1460	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=24;MMLQ=24;MQ=60.0;NF=35,93;NR=29,80;PP=610,1460;QD=10.3666855447;SC=CTGAGCTGCACTGGGTTTGCC;SbPval=0.58;Source=Platypus;TC=177;TCF=96;TCR=81;TR=64,173;WE=1225696;WS=1225677;set=Platypus	GT:AF:DP	0/1:0.36:177
chr5	1225688	rs7728814	T	C	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=0.547;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:118,75:0.39:193
chr5	1225703	rs7724858	A	G	6170.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	1225801	rs7704363	G	A	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:87,65:0.43:152
chr5	1232240	rs7379178	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr5	1232406	.	T	G	2093.77	.	AC=1;AF=0.500;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,91:0.68:133
chr5	1232491	rs4975623	G	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	1232775	rs6858999	T	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr5	1240848	rs6554684	A	C	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:39,89:0.70:128
chr5	1243009	rs7721679	A	G	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	1244425	rs4073918	C	T	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:72,150:0.68:222
chr5	1271524	rs11133719	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	1278584	rs2075785	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr5	1280128	rs7734992	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr5	1320689	.	G	A	289.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr5	1320722	rs402710	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr5	1321873	rs10073340	C	T	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:97,153:0.61:250
chr5	1325767	rs466502	A	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr5	1325803	rs465498	A	G	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:37,78:0.68:115
chr5	1330253	rs452932	T	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:27,75:0.74:102
chr5	1334507	rs5865369	GA	G	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:130,57:0.30:187
chr5	1344458	rs31490	G	A	7713.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:142,338:0.70:480
chr5	1409127	rs429699	T	C	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr5	1416142	rs40358	C	A	7586.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr5	1420588	rs11564758	C	G	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:52,93:0.64:145
chr5	1432825	rs460000	G	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:104,53:0.34:157
chr5	1432876	rs465130	G	A	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.704;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr5	1432881	rs465989	C	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.658;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-0.687;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr5	1442974	rs2254408	C	A	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.888;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:99,48:0.33:147
chr5	1442979	rs2270914	C	T	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.185;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:103,48:0.32:151
chr5	1464028	rs6876662	C	T	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr5	1466813	rs2277007	T	C	5778.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:132,249:0.65:381
chr5	1467004	rs35452723	A	G	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:86,134:0.61:220
chr5	1471109	rs27054	T	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr5	1479678	rs27059	G	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:88,37:0.30:125
chr5	1501790	rs1979396	T	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr5	1594664	rs4246747	C	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	1708983	rs12523324	G	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:120,76:0.39:196
chr5	1801426	rs13176353	G	C	3279.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	1801427	rs34372448	C	CG	3320.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	1801432	rs11745573	A	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	1801689	rs2242412	A	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	1814395	rs36074605	TTGTA	T	6073.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	1814783	rs4147773	T	C	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	1878061	.	C	T	137.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	1878440	rs1689717	C	T	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.705;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.907;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:188,61:0.24:249
chr5	1878656	.	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.677;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:127,22:0.15:149
chr5	1880865	rs4975753	T	C	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:73,143:0.66:216
chr5	1880891	rs2232376	C	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:191,89:0.32:280
chr5	1881828	rs2232375	C	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:69,34:0.33:103
chr5	1881916	rs2307118	A	C	5863.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:120,255:0.68:375
chr5	1882129	rs2232374	T	G	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:59,115:0.66:174
chr5	1882280	rs2232373	C	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr5	1882579	rs4975757	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.60;ReadPosRankSum=-0.578;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr5	1882788	rs2232372	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-1.372;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr5	1882900	rs6876836	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	2748427	rs111879512	C	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.12;ReadPosRankSum=-0.617;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr5	2748432	rs111347141	G	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.12;ReadPosRankSum=-0.125;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr5	2748439	rs112775132	G	C	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.91;ReadPosRankSum=-0.669;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr5	2755031	rs62333234	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	2755191	rs76652220	G	C	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr5	2755485	rs62333235	C	T	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.495;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr5	3600334	rs844154	T	C	9549.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	3610658	rs1373997	T	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	4087485	rs6869319	G	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	4095647	.	C	CCTTTCCTTTTCTTTT	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=9.848;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=4.98;ReadPosRankSum=1.407;SOR=2.940;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr5	4420188	rs140931368	G	GTGTA	6680.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:3,179:0.98:182
chr5	4420474	rs2436584	A	G	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.270;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:62,23:0.27:85
chr5	4702349	rs61031970	GT	G	121.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.39;ReadPosRankSum=1.465;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	4702351	rs57238946	GT	G	121.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.39;ReadPosRankSum=1.368;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	4886332	rs1968828	C	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr5	4930087	.	G	GTGAA	630	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=3;MGOF=37;MMLQ=23;MQ=60.0;NF=14;NR=7;PP=630;QD=30.2857142857;SC=GTGTGTGTGTGAGAGAGAGAG;SbPval=0.81;Source=Platypus;TC=31;TCF=18;TCR=13;TR=21;WE=4930095;WS=4930077;set=Platypus	GT:AD:AF:DP	0/1:10,21:0.68:31
chr5	4930144	rs35167763	AAG	A	2726.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr5	4930181	rs560366	C	T	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:39,89:0.70:128
chr5	5140632	rs270208	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr5	5140958	rs270207	T	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr5	5140970	rs270206	C	T	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=36.22;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	5141009	rs59628659	CTT	CT,C	749.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=57;set=Intersection	GT:AF:DP	1/1:0.96:45
chr5	5146200	rs1863969	A	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:145,78:0.35:223
chr5	5146223	rs1871468	G	C	7500.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	5146335	rs2086310	C	G	8648.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:1,318:1.00:319
chr5	5146377	rs1019747	T	C	3758.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:95,163:0.63:258
chr5	5146395	rs1863968	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:141,80:0.36:221
chr5	5186415	.	GT	G	126.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=6.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-1.377;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr5	5186416	rs62339905	T	G	601.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr5	5186417	.	GT	G	39.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=4.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-1.456;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr5	5187776	rs1863972	G	A	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	5189950	rs6859975	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	5200220	rs58639468	A	ATC,ATCTC	5060.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=235;set=Intersection	GT:AF:DP	1/2:0.35,0.58:226
chr5	5200281	rs6555335	C	T	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	5200490	rs17762877	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr5	5232346	rs2913623	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	5232356	rs150710468	AGG	A	2307.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	5232398	rs2913624	G	A	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	5234982	.	C	CAGA	51	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.8816;HP=19;HapScore=2;MGOF=65;MMLQ=28;MQ=54.81;NF=4;NR=0;PP=51;QD=13.5;SC=GACTCCATCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=5;TCF=4;TCR=1;TR=4;WE=5234990;WS=5234980;set=Platypus	GT:AD:AF:DP	0/1:1,4:0.80:5
chr5	5235001	rs57587005	A	G	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	5235028	rs2913630	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	5235096	rs2913631	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	5303349	rs11959893	T	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	5303614	rs11134110	C	T	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	5436609	rs2578552	G	A	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=6.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-1.247;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:42,68:0.62:110
chr5	5437380	rs2578550	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr5	5443179	rs2578554	G	A	357.96	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr5	5460569	rs2578565	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr5	5460619	rs2619844	G	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:70,41:0.37:111
chr5	5462148	rs2578500	G	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:204,102:0.33:306
chr5	5476250	rs11416699	T	TG	140.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr5	6312844	rs370741234	CCACACA	C	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.57;ReadPosRankSum=1.351;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr5	6312879	rs2168655	C	G	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=1.351;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr5	6337065	.	T	TACACACACACACACACACACACAC	1428	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=23;MQ=55.45;NF=3;NR=2;PP=1428;QD=286.4;SC=TACACATACATACACACACAC;SbPval=0.23;Source=Platypus;TC=22;TCF=18;TCR=4;TR=5;WE=6337073;WS=6337061;set=Platypus	GT:AD:AF:DP	1/0:17,5:0.23:22
chr5	6378614	rs7723985	G	C	10725.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr5	6600150	rs3822434	G	A	3119.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:59,137:0.70:196
chr5	6600492	.	G	GT	619.73	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	6602544	rs2303711	T	C	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	6602668	rs2303710	G	C	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	6604931	rs6889694	C	T	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	6604970	rs6888601	G	A	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	6605532	rs2303707	C	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	6607125	rs3217325	GAAC	G	5187.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	6611757	rs10454287	A	T	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	6611983	rs3733776	C	A	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	6612027	rs6884320	T	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	6612069	rs34006880	C	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	6617011	rs6887702	C	A	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	6618186	rs10475338	T	C	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	6620092	rs2288445	C	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	6622017	rs2303705	T	G	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	6623250	rs74404604	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr5	6632875	rs10076470	G	A	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	6632909	rs571550	G	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	6632942	rs193743	G	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	6633042	rs10062086	C	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	6633779	rs248793	C	G	8842.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr5	6645016	rs248805	A	G	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	6651970	rs3822430	A	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	6652009	rs8192186	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	6652252	rs3733773	G	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	6656210	rs3736316	G	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	6737571	rs2279657	A	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.72;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	6737571	.	ATGTGG	GTGTGA,GTGTGG	385	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=17,27;NR=3,6;PP=385,178;QD=21.9233937431;SC=AGAACAGAAAATGTGGTGACA;SbPval=0.69;Source=Platypus;TC=34;TCF=28;TCR=6;TR=20,33;WE=6737584;WS=6737561;set=Platypus	GT:AF:DP	0/1:0.59:34
chr5	6737576	rs2279656	G	A	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-1.201;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr5	6739039	rs573304	T	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	6739791	rs419128	G	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:43,100:0.70:143
chr5	6748518	rs274682	A	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	6748659	rs274681	T	C	9151.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr5	6748736	rs186767171	C	T	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:189,111:0.37:300
chr5	6748810	rs2279653	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr5	6749639	rs189435298	T	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr5	6754762	rs274676	T	C	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	6827854	rs275441	C	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr5	7520881	rs13166360	G	T	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:423,185:0.30:608
chr5	7695845	rs11134251	C	A	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	7696028	rs11134252	C	T	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	7712810	rs6555488	C	T	88.94	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.79;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	7717396	rs6878196	T	C	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=0.660;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:34,39:0.53:73
chr5	7724521	rs371811181	GT	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.728;QD=4.04;ReadPosRankSum=-1.586;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr5	7743787	rs62342477	C	T	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:87,150:0.63:237
chr5	7757704	.	G	GCCCCAGAGCA	1274.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.99;ReadPosRankSum=0.820;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:17,34:0.67:51
chr5	7757705	.	T	TGGCCGTGTTCAACATGGTAAGC	1274.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.656;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.12;ReadPosRankSum=0.676;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:17,30:0.64:47
chr5	7757715	rs4479814	C	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=0.000;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr5	7802363	rs2290910	C	T	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr5	7826648	rs141881348	AAAC	A	687.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr5	7826680	rs6887726	T	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr5	7835616	rs34574678	G	GA	2001.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:57,101:0.64:158
chr5	7835685	rs179044	G	T	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr5	7850898	.	TGCCCAGCCGCCCAGCC	T,TGCCCAGCC	456.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=14;set=Intersection	GT:AF:DP	1/2:0.75,0.25:12
chr5	7859523	rs1046012	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr5	7861985	rs2307116	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr5	7862926	rs3733784	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	7866106	rs17184211	A	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:167,65:0.28:232
chr5	7866135	rs141939619	TTGAGG	T	4641.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:36,114:0.76:150
chr5	7866967	rs162030	G	C	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	7868030	rs2966952	T	C	7561.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	7869455	rs34828626	TC	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.274;QD=2.11;ReadPosRankSum=0.591;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr5	7870083	rs326119	C	A	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:64,99:0.61:163
chr5	7870095	rs12653464	G	A	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:64,94:0.59:158
chr5	7870973	rs1801394	A	G	7119.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr5	7878179	rs1532268	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:146,65:0.31:211
chr5	7885782	rs34487083	A	AT	1153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.283;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:51,75:0.60:126
chr5	7885794	.	T	TTC	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=3.57;ReadPosRankSum=2.195;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:116,51:0.31:167
chr5	7886585	rs35035568	TG	T	317.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr5	7893121	rs162049	G	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	7897319	rs1802059	G	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.654;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:85,39:0.31:124
chr5	8461166	rs341899	T	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	9043142	rs3834271	T	TA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.000;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr5	9050410	rs257098	C	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr5	9053945	rs257095	C	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:64,34:0.35:98
chr5	9066464	rs786847	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:87,41:0.32:128
chr5	9066802	rs786846	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:100,44:0.31:144
chr5	9122890	rs17238053	C	A	5360.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:138,239:0.63:377
chr5	9136646	rs17238609	C	G	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:75,111:0.60:186
chr5	9154659	rs1806151	G	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.139;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr5	9201973	rs40683	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	9265602	rs7734564	C	T	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:49,131:0.73:180
chr5	9280957	rs6555597	C	A	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	10227548	rs2136197	C	A	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	10227823	rs3080459	C	CCT	1505.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	10235490	rs2292264	G	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	10236927	rs2292263	C	T	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	10237036	rs12653481	A	G	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	10239261	rs2438652	G	A	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:242,106:0.30:348
chr5	10239278	rs2252505	C	T	3454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.144;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.065;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:251,105:0.29:356
chr5	10250047	rs2607301	C	A	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=24.46;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	10250430	rs2548546	G	A	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	10250443	rs2578618	T	C	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	10254504	rs140671145	CT	C	86.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	10254817	rs2578617	A	G	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	10255021	rs2607294	T	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	10255083	rs2578616	A	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	10256161	rs1042392	T	C	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	10258125	rs2457156	G	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	10261542	rs2607327	C	T	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	10261966	rs2244717	G	A	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	10262740	rs2578642	C	A	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	10263451	.	TGGAG	T	2947	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=6;NR=71;PP=2947;QD=20;SC=CGCCTCTGCGTGGAGGGGGGG;SbPval=0.43;Source=Platypus;TC=88;TCF=6;TCR=82;TR=77;WE=10263472;WS=10263441;set=Platypus	GT:AD:AF:DP	1/1:11,77:0.88:88
chr5	10263453	rs147103051	GA	G	5492.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=43.94;SOR=2.068;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	10263457	rs58620077	G	A	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.83;SOR=2.187;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	10263461	rs370306096	GGGA	G	5310.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=45.39;SOR=2.204;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	10264962	rs544	A	G	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	10282396	rs10067744	A	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	10282479	rs10052785	C	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	10386892	rs144266954	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr5	10415850	.	A	AT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=5.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.528;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr5	10417589	rs2967956	G	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	10442496	rs2567577	T	C	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	10448247	rs1976360	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	10505467	rs62362463	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.421;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr5	10505585	rs17816571	A	G	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.823;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:163,66:0.29:229
chr5	10509069	rs1392005	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr5	10564846	rs814576	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	10565027	rs1103749	C	G	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	10680997	rs5745297	G	A	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:223,118:0.35:341
chr5	10683822	rs5745289	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr5	10748231	rs267944	C	T	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	10748462	rs267943	C	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	10761009	rs11740244	C	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	10761182	rs267927	A	G	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	11082762	rs2277053	T	C	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	11084189	rs1024621	T	C	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	11111066	.	C	A	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-2.092;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:293,68:0.19:361
chr5	11159657	rs1990003	T	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	11412302	rs31750	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	11564995	rs7719578	A	G	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.367;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	13729714	rs3777093	A	G	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	13735892	rs3734109	T	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	13737700	rs2401811	A	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	13793949	.	G	T	1344.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr5	13810529	rs31238	C	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	13850651	rs795528	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	13850731	rs795527	C	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr5	13850750	rs6554820	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr5	13851016	rs795526	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	13859743	rs1502043	G	T	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.324;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:119,59:0.33:178
chr5	13859772	rs1502040	A	C	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:47,85:0.64:132
chr5	13859807	rs1867677	G	T	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	13862600	rs7724453	T	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,29:0.33:87
chr5	13862616	rs7704417	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:84,34:0.29:118
chr5	13864728	rs6554827	C	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:71,45:0.39:116
chr5	13864885	rs6554828	G	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr5	13865717	rs7720415	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr5	13865980	rs7703349	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr5	13866450	rs11748811	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr5	13867819	rs1445810	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.737;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr5	13867851	rs13156044	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:43,11:0.20:54
chr5	13868103	rs35398031	TA	T	270.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr5	13870836	rs35621834	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr5	13871925	rs10513159	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr5	13876664	rs1445804	T	C	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	13882841	rs10057007	A	G	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:20,69:0.78:89
chr5	13883262	rs10462710	C	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr5	13885023	rs147685082	GCA	G	575.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr5	13886244	rs201639682	CAAA	C	1220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.61;ReadPosRankSum=-1.527;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,45:0.83:54
chr5	13900345	rs1445823	A	G	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=1.555;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:64,42:0.40:106
chr5	13902220	rs1530498	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr5	13911405	rs3765045	G	T	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr5	13911700	rs34152978	GAA	G	232.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr5	13911704	rs67065537	A	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr5	13913885	rs3213936	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:112,49:0.30:161
chr5	13914120	rs10513162	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr5	13914556	rs13179761	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr5	13914775	rs13180591	G	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-0.053;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr5	13914796	rs13162553	T	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-1.024;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr5	13914819	rs13180613	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=2.013;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr5	13916302	rs11750882	C	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr5	13919255	rs35925547	T	G	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:42,59:0.58:101
chr5	13928085	rs12659700	T	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:88,51:0.37:139
chr5	13944512	rs339445	A	C	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:51,110:0.68:161
chr5	14183866	rs354302	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr5	14183979	rs71597901	CAG	C	527.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr5	14184022	rs354301	G	A	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-1.589;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:53,22:0.29:75
chr5	14184079	rs354300	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:65,27:0.29:92
chr5	14184211	rs354299	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr5	14184254	rs354298	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr5	14290805	rs30629	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:161,67:0.29:228
chr5	14293345	rs773767	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr5	14330755	rs34654449	AT	A	250.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr5	14366840	rs30784	T	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	14368975	rs13189406	C	T	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	14369690	rs35860741	G	A	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	14377962	rs30769	A	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	14378068	rs30770	T	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	14381174	rs247137	C	T	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	14387489	rs30794	G	C	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	14388797	rs57751910	G	GT	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.301;QD=2.62;ReadPosRankSum=-0.291;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:64,31:0.33:95
chr5	14394283	rs256412	G	A	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	14397238	rs30774	T	C	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	14398902	rs34806703	AT	A	1010.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	14405895	rs389729	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	14420027	rs30612	A	C	7384.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	14462816	rs27100	C	T	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	14472626	rs26186	T	C	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	14476915	rs140018798	AAAAAAG	A	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=64.19;MQRankSum=1.927;QD=26.62;ReadPosRankSum=0.254;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr5	14476968	rs40490	G	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr5	14479938	rs26173	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:70,26:0.27:96
chr5	14479991	rs32527	C	T	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:51,121:0.70:172
chr5	14481270	rs111593684	TA	T	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.300;QD=3.77;ReadPosRankSum=-0.235;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:56,29:0.34:85
chr5	14481880	rs34046917	CTTT	C	207.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.31;ReadPosRankSum=0.524;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr5	14485161	.	G	GT	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.930;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.636;QD=2.62;ReadPosRankSum=-1.561;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:91,35:0.28:126
chr5	14485386	rs26098	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr5	14498727	rs26107	G	A	4296.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:100,197:0.66:297
chr5	14507905	rs26086	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr5	14610184	rs25960	C	G	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	14664821	rs250435	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	14678996	rs31930	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	14713225	.	G	A	1394.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,59:0.61:97
chr5	14741921	rs187483	A	C	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:210,101:0.32:311
chr5	14749551	rs697569	T	C	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr5	14751399	rs697570	C	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr5	15927927	rs66504704	A	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-2.755;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr5	16091242	rs11389357	G	GA	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	16177807	rs2582666	A	G	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	16179125	rs342550	C	T	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	16474778	rs11428210	C	CT	767.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.423;QD=7.75;ReadPosRankSum=-1.460;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:42,57:0.58:99
chr5	16477751	rs162850	C	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	16478120	rs162849	A	G	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,62:0.68:91
chr5	16478200	rs162848	G	A	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	16479151	rs6883888	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr5	16479220	rs33692	A	G	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	16481062	rs2305279	C	T	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:246,131:0.35:377
chr5	16572153	rs78314670	G	A	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:119,180:0.60:299
chr5	16667003	rs26743	C	T	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	16667065	rs33273	C	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr5	16668256	rs35579	A	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr5	16670618	rs27431	C	T	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	16672639	rs4702164	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr5	16673975	rs25901	C	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:74,32:0.30:106
chr5	16676103	rs28057	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr5	16679914	rs10060411	G	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr5	16679926	rs3217321	G	GC	699.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr5	16679966	rs35580	C	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr5	16681966	rs399833	G	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:107,53:0.33:160
chr5	16684109	rs2303703	T	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=5.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=1.524;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:107,51:0.32:158
chr5	16699512	rs256930	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr5	16704806	rs3860136	G	A	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:257,142:0.36:399
chr5	16711365	rs3214558	CA	C	668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=1.563;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:110,54:0.33:164
chr5	16711451	rs27552	G	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr5	16755049	rs17429731	C	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr5	16761393	rs6881211	C	T	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	16762646	rs31511	T	C	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	16764255	rs375881422	CA	C,CAA	1082.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=87;set=Intersection	GT:AF:DP	1/2:0.69,0.21:80
chr5	16766093	rs2561232	C	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	16769273	rs11750538	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr5	16783437	rs71595983	T	TAAAC	5563.73	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:81,132:0.62:213
chr5	16794916	rs396514	G	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:39,80:0.67:119
chr5	16795027	rs35681033	CA	C	1543.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr5	16818363	rs12188582	A	G	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	16877640	rs7356599	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr5	16877701	rs7710976	C	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr5	17276053	rs59080603	CCT	C,CCTCT	721.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=57;set=Intersection	GT:AF:DP	1/2:0.48,0.45:31
chr5	19721490	rs12187552	T	C	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	21461786	rs4701564	T	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr5	21751715	rs10657805	C	CAGAA	608.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.40;MQRankSum=0.000;QD=32.04;ReadPosRankSum=-1.030;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,18:0.95:19
chr5	21751741	rs28638343	T	G,TTGTGTGTGTG	1448.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=68.99;SOR=4.407;set=HC	GT:AD:AF:DP	1/2:0,9,12:0.43,0.57:21
chr5	21752050	rs6451992	A	G	10146.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	21752056	rs6451993	A	G	10310.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	21760602	rs2303748	C	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	21802662	rs6897177	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	23510158	rs34033521	AT	A	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.771;QD=4.98;ReadPosRankSum=-2.156;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr5	23510203	rs2973615	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	23523348	rs1874165	C	T	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	23527919	rs2099081	A	G	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	23975952	rs10037197	G	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr5	23976115	rs1501940	G	A	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:72,94:0.57:166
chr5	24509643	rs62349562	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:103,43:0.29:146
chr5	24509947	rs3797171	C	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr5	24511654	.	CAGAGAGAGAGAG	C	574.74	.	AC=1;AF=0.500;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.25;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr5	25190672	rs55966917	C	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	26886261	rs72744728	A	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr5	26905920	rs5866810	GT	G	868.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	31302288	rs2287582	C	T	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	31317494	rs2302904	C	T	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr5	31317529	rs2302903	A	G	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr5	31317952	rs2229575	T	C	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr5	31322851	rs2962790	A	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	31401447	rs10719	A	G	8484.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr5	31435975	.	C	CA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.826;QD=1.61;ReadPosRankSum=-0.003;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:99,27:0.21:126
chr5	31483596	rs10052174	G	A	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	31483753	rs11341915	GA	G	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.03;MQRankSum=2.052;QD=10.03;ReadPosRankSum=0.266;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:11,39:0.78:50
chr5	31485230	rs7712436	T	C	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	31486540	rs7735863	A	G	9533.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr5	31508933	rs56327412	G	GT	630.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;MQRankSum=0.497;QD=16.17;ReadPosRankSum=1.042;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr5	31511106	rs13183642	G	T	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	31529299	rs6859527	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.45;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	31529306	rs6450850	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	31532429	rs2291109	A	T	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	32000483	rs10054504	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	32037569	rs923834	A	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr5	32054092	rs149414	C	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr5	32057651	rs161545	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr5	32058115	rs151861	A	G	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	32060985	rs35665699	T	TATC	2453.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	32069910	rs6862076	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr5	32071325	rs56223765	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:72,35:0.33:107
chr5	32074392	rs2291114	G	A	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:246,144:0.37:390
chr5	32087228	rs157494	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:85,38:0.31:123
chr5	32087253	rs157495	A	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:119,58:0.33:177
chr5	32087374	rs157496	A	G	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:271,146:0.35:417
chr5	32087802	rs157497	A	G	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:223,108:0.33:331
chr5	32101168	rs2279232	A	T	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:62,124:0.67:186
chr5	32135599	rs161539	G	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:25,70:0.74:95
chr5	32209752	rs6873314	A	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=0.124;QD=3.73;ReadPosRankSum=-0.707;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	32242381	rs7729256	G	T	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	32248077	rs11960898	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:169,70:0.29:239
chr5	32263099	rs61418287	G	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr5	32268614	rs72294899	T	TA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.521;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr5	32270747	rs59928961	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr5	32276634	rs57425852	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.312;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=8.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-0.998;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr5	32379210	rs1862636	G	A	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:93,126:0.58:219
chr5	32388471	rs889318	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr5	32403346	rs4867440	C	T	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:150,229:0.60:379
chr5	32415360	rs5867145	TA	T	545.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr5	32417694	rs178935	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr5	32419805	rs7445799	T	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr5	32444199	rs2922295	C	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.639;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr5	32444286	rs183443	A	G	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-0.048;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:24,67:0.74:91
chr5	32523298	rs687659	T	A	5757.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	32523343	rs2457151	C	T	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	32591804	.	AT	A	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-2.228;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr5	32688982	rs72740623	T	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr5	32689008	rs1458050	C	G	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr5	32710965	rs56022335	GT	G	1617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=6.065;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.706;QD=12.07;ReadPosRankSum=-0.848;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:21,113:0.84:134
chr5	32711000	rs34939454	A	ATGTGTG,ATGTGTGTGTG	1676.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=105;set=Intersection	GT:AF:DP	1/2:0.53,0.45:40
chr5	32716474	rs34628434	C	CT	1191.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=6.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=-0.278;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:8,63:0.89:71
chr5	32716589	rs10057069	T	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	32725072	rs1147224	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	32786465	.	C	CT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DP=402;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=4.630;QD=0.27;ReadPosRankSum=-1.197;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:301,53:0.15:354
chr5	33448962	rs5867190	A	AT	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	33453368	rs35931457	CT	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.617;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.931;QD=3.79;ReadPosRankSum=-0.283;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr5	33457618	rs1003000	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr5	33461355	rs2270905	G	A	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr5	33535060	rs25754	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:59,29:0.33:88
chr5	33546113	.	TAA	T	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.674;QD=7.72;ReadPosRankSum=-1.006;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr5	33549559	rs462629	C	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:77,30:0.28:107
chr5	33561028	rs35553442	GA	G	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-0.676;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:11,31:0.74:42
chr5	33576520	.	A	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-1.209;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:178,31:0.15:209
chr5	33630839	rs4260678	A	G	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.373;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:119,46:0.28:165
chr5	33631142	rs7444287	C	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr5	33637596	rs4076945	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr5	33637891	rs4076946	C	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=1.523;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr5	33637899	rs4076947	G	A	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.102;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.352;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr5	33643395	rs10066043	A	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr5	33643617	rs4866409	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:154,58:0.27:212
chr5	33648842	rs34079160	GTT	G	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr5	33648906	rs6870538	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr5	33649220	rs4866353	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr5	33649637	rs4242082	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:62,21:0.25:83
chr5	33649807	rs4504387	C	A	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=2.565;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:68,36:0.35:104
chr5	33649905	rs4621563	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr5	33751389	rs5867210	T	TA	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr5	33751454	rs1530507	A	T	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	33881669	.	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.636;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr5	33951693	rs16891982	C	G	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	33954511	rs2287949	T	C	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	33963731	rs141348470	AAAC	A	651.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr5	33963745	.	AC	A	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=1.481;QD=7.54;ReadPosRankSum=0.356;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr5	33963748	.	AAG	A	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=1.492;QD=7.15;ReadPosRankSum=0.358;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr5	33963750	.	G	A	245	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=4;HapScore=2;MGOF=25;MMLQ=25;MQ=61.16;NF=18;NR=4;PP=245;QD=12.7168732976;SC=CAACAACAAAGAGCAAGAATA;SbPval=0.42;Source=Platypus;TC=60;TCF=51;TCR=9;TR=22;WE=33963758;WS=33963740;set=Platypus	GT:AD:AF:DP	1/0:38,22:0.37:60
chr5	33964210	rs183671	T	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	33964241	rs6451048	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	33969170	.	C	CTGTGTGTG,CTGTGTGTGTG	1130.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=52;set=Intersection	GT:AF:DP	1/2:0.55,0.45:22
chr5	33989518	rs2278008	C	T	5117.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:121,221:0.65:342
chr5	33998768	rs34677	C	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:113,58:0.34:171
chr5	33998883	rs2287939	A	G	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:193,90:0.32:283
chr5	34033670	rs299594	T	C	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	34035609	rs17583316	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr5	34042866	rs112167551	A	AAAC	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=2.773;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr5	34687911	rs2279604	G	A	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:43,83:0.66:126
chr5	34688210	rs142375133	CGACAAA	C	4463.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:96,115:0.55:211
chr5	34757505	rs6865288	A	G	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	34803675	rs66603667	AC	A	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=1.078;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr5	34823336	rs35088174	G	A	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:211,102:0.33:313
chr5	34863220	rs3846632	G	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr5	34867303	rs10053214	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr5	34925312	rs35326249	C	CT	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.885;QD=5.74;ReadPosRankSum=1.717;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr5	34945812	rs6868348	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	34954588	rs37437	T	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	35003683	rs11426533	C	CT	628.86	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr5	35010138	rs466067	A	G	7834.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr5	35026683	rs344513	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=26.14;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	35033047	rs2291698	C	T	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	35033526	rs2291701	C	T	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	35033605	rs180749	G	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	35037006	rs171081	T	C	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	35039437	rs2279651	A	G	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	35039486	rs37370	C	T	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	35068238	rs79469561	C	T	3626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.85;ReadPosRankSum=-0.401;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:75,91:0.55:166
chr5	35068248	rs78373811	G	C	3752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.62;ReadPosRankSum=0.160;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:83,99:0.54:182
chr5	35068814	.	A	AT	2058.73	.	AC=1;AF=0.500;AN=2;DP=190;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:59,125:0.68:184
chr5	35072620	rs57717665	A	G	3484.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:90,151:0.63:241
chr5	35084647	rs2228482	T	C	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:62,114:0.65:176
chr5	35644621	rs7706444	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr5	35700598	rs6451206	T	C	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	35702209	rs35297265	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	35702212	rs11357084	GA	G	1362.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	35702306	rs6874120	A	G	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	35704584	rs7448971	C	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	35704892	rs10058349	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	35709095	rs13170082	C	T	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	35709184	rs13170390	G	C	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	35712780	rs10078803	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	35713007	rs10073537	T	G	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	35727783	rs116248955	C	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:88,57:0.39:145
chr5	35739960	rs10043875	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	35753715	rs11957963	T	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	35753924	rs62353693	T	C	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:134,67:0.33:201
chr5	35763877	rs11298650	AG	A	1999.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	35763895	rs6876874	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	35763916	rs6895801	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	35764587	rs4869466	G	A	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	35764603	rs4869467	A	G	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	35764696	rs4242258	C	T	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr5	35792356	rs7730148	A	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	35795738	rs716971	T	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	35857177	rs1353252	G	C	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	35857235	rs1494561	C	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	35857262	rs1353250	A	G	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	35857308	rs5867289	T	TC	1799.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	35861068	rs1494558	T	C	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr5	35861152	rs11567705	C	G	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	35871190	rs1494555	G	A	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	35874528	rs372733591	C	T	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:90,166:0.65:256
chr5	35874575	rs6897932	C	T	8446.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr5	35875593	rs987106	A	T	7128.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr5	35904524	.	A	C	345.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:58,19:0.25:77
chr5	35910419	rs1445899	C	T	9137.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr5	35910529	rs1445898	C	T	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	35921069	rs6859892	T	C	10117.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr5	35955682	rs768622	C	G	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	35956026	rs768621	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	35962984	rs1070895	A	G	3966.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	36037778	rs2247611	G	A	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	36111167	rs43189	A	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	36123065	rs141044130	TA	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.905;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr5	36137620	rs267759	A	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	36147806	rs10071838	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	36147977	rs145081749	T	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr5	36166827	rs34784319	C	CT	537.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=10.851;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.820;QD=10.76;ReadPosRankSum=-2.058;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr5	36168582	rs7736391	T	C	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	36176874	rs40030	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	36195448	rs11952882	A	G	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	36201336	rs7705396	C	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	36207424	rs2303163	G	T	5949.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	36217764	rs111441491	G	GTTAATCA	4411.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	36241922	rs62356073	G	A	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr5	36241988	rs34888491	G	C	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	36249716	.	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.201;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr5	36253937	rs4869473	G	A	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	36257004	rs77621361	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr5	36260976	rs6881086	T	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	36265355	rs140994956	A	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr5	36268218	rs6869599	A	G	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	36269551	rs1035480	G	C	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	36271491	rs5867310	CT	C	206.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	36301362	rs10941287	T	A	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=2.173;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	36301362	.	TTCTTCCT	ATCTTCCA,ATCTTCCG	649	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=16;MMLQ=27;MQ=60.0;NF=31,20;NR=9,5;PP=649,363;QD=17.5616968716;SC=CAGCCCACCATTCTTCCTGGA;SbPval=0.54;Source=Platypus;TC=67;TCF=52;TCR=15;TR=40,25;WE=36301377;WS=36301352;set=Platypus	GT:AF:DP	0/1:0.60:67
chr5	36301369	rs884692	T	A,G	3053.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.66;SOR=2.043;set=HC	GT:AD:AF:DP	1/2:0,49,28:0.64,0.36:77
chr5	36301420	rs884694	G	T	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	36680713	rs3733811	C	T	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,65:0.66:98
chr5	36683801	rs56038114	T	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	36683809	rs11284736	CA	C	571.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	36683903	rs56039629	C	T	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	36683920	rs56256473	G	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:62,27:0.30:89
chr5	36686404	rs2229894	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr5	37115000	rs11286555	CA	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=2.404;QD=2.69;ReadPosRankSum=-1.853;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr5	37247700	rs6876576	G	A	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	37247900	rs11320255	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.25;ReadPosRankSum=0.001;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr5	37307299	rs34995492	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.807;SOR=2.395;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr5	37325919	.	A	G	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=0.000;QD=15.20;ReadPosRankSum=0.189;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr5	37364443	rs217852	C	T	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	37392279	.	G	GT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.119;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr5	37605048	rs1400853	A	G	281.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.31;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	37605122	rs150300664	CT	C	465.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.25;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	37687843	rs35188065	AT	A	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=8.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=0.356;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:17,30:0.64:47
chr5	37688010	rs4371784	A	G	3204.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:82,151:0.65:233
chr5	37688094	rs6451337	C	T	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:40,83:0.67:123
chr5	37724932	rs3214462	CATT	C	211.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr5	37724990	rs7444391	G	A	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	37752415	rs1549252	A	G	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	37752460	rs1549251	T	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	37752497	rs2973079	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	38305547	rs2451018	G	A	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:92,149:0.62:241
chr5	38407060	rs138323038	C	T	4769.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:83,215:0.72:298
chr5	38412637	rs202118362	G	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.706;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:180,30:0.14:210
chr5	38482504	rs2256595	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	38504303	rs16903989	A	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	38510481	rs34968906	AC	A	567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-0.468;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr5	38510488	rs74946482	C	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr5	38512154	rs1037033	T	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr5	38527228	rs2289779	T	G	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr5	38528951	rs34759137	GAC	G	890.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr5	38528969	rs71604901	CACACACACACAG	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.275;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr5	38530485	rs11293177	CA	C	242.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	38822040	rs413278	A	G	216.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	38823254	rs369886	C	T	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	38823358	rs581668	C	A	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr5	38876573	rs357271	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	38904363	rs1239334	C	T	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	38917574	rs357260	G	A	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	38917904	rs357262	G	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	38923171	rs357293	T	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	38931919	rs357277	G	A	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	38932466	rs357278	A	C	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	38942554	rs201700638	AT	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.614;QD=1.43;ReadPosRankSum=-0.605;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr5	38950776	rs2115949	G	A	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	38953427	rs2115948	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	38953447	rs2115947	T	A	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	38953665	rs33912683	G	GA	437.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	38954994	rs9292726	T	C	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	38955796	rs2043112	G	A	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	38958968	rs6868591	A	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr5	38959794	rs2115946	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	38962543	rs7729745	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.24;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	38966903	rs11435048	A	ATT	768.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=-0.377;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr5	38971865	rs13165709	A	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	38971912	rs7732615	T	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.31;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	38990944	.	G	GAT	347	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=1;HapScore=3;MGOF=10;MMLQ=28;MQ=66.83;NF=11;NR=2;PP=347;QD=27.7692307692;SC=TGAGATATATGAGATATATGA;SbPval=0.6;Source=Platypus;TC=13;TCF=11;TCR=2;TR=13;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	38990946	.	G	T	322	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=2;HapScore=3;MGOF=10;MMLQ=28;MQ=65.01;NF=16;NR=2;PP=322;QD=19.8206229193;SC=AGATATATGAGATATATGATA;SbPval=0.88;Source=Platypus;TC=25;TCF=20;TCR=5;TR=18;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:7,18:0.72:25
chr5	38990957	.	T	G	774	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=2;HapScore=3;MGOF=10;MMLQ=27;MQ=63.42;NF=26;NR=7;PP=774;QD=24.508218562;SC=ATATATGATATATATATGATA;SbPval=0.55;Source=Platypus;TC=33;TCF=26;TCR=7;TR=33;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	38990957	.	T	TATGAGATATATGATATATATATGATAG	1415.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.18;QD=94.38;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	39021369	rs13177690	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	39074185	rs200197475	TCGCGGCGCC	T	6591.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:77,165:0.68:242
chr5	39074296	rs2303808	G	C	14787.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr5	39107353	rs404122	T	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	39108309	rs377022	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	39108322	rs430630	A	G	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	39119723	rs379707	C	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-0.760;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:21,34:0.62:55
chr5	39124508	rs2303807	C	T	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=1.008;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr5	39127960	rs56166211	G	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-1.389;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:66,43:0.39:109
chr5	39134169	rs68032871	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.091;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr5	39134295	rs4957318	C	T	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=1.160;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:150,56:0.27:206
chr5	39139176	rs10059957	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr5	39141240	rs3188386	G	A	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=1.784;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:239,96:0.29:335
chr5	39288793	rs184697924	G	A	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:64,141:0.69:205
chr5	39342308	rs476569	C	T	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr5	39364339	rs700231	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr5	39364358	rs700232	G	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:73,40:0.35:113
chr5	39364554	rs700233	G	A	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:82,51:0.38:133
chr5	39375082	rs2686162	C	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr5	39377418	rs2738238	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr5	39390061	rs2855512	C	A	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	39394493	rs1050903	G	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr5	40716153	rs10737963	C	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr5	40728383	.	C	CAAAAAAAAAAAAA	832.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=104.09;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	40769178	.	CAT	C	407.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr5	40772071	rs837103	C	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	40834864	rs3816959	T	C	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr5	40841741	rs10512747	C	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.826;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:111,38:0.26:149
chr5	40852451	rs188934	C	G	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	40928574	rs2443040	A	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr5	40928792	rs2459467	T	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.928;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr5	40931357	rs2271709	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr5	40947535	rs114345094	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr5	40949997	rs1450656	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	40954854	rs7726621	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr5	40954879	rs7726498	A	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.32;ReadPosRankSum=-1.633;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr5	40955561	rs1063499	G	C	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:52,154:0.75:206
chr5	40964816	rs7713884	C	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr5	40972111	rs10805655	C	T	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	40972769	rs34641824	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr5	40980102	rs2292727	C	T	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-1.205;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr5	40981375	rs3749519	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	40981398	rs41271065	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr5	40998196	rs704040	T	C	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:40,78:0.66:118
chr5	40998235	rs722575	C	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:36,71:0.66:107
chr5	40998814	rs2876850	T	A	1655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.361;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:33,77:0.70:110
chr5	40998851	rs2329435	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr5	40999900	rs1376175	T	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr5	41000243	rs1376177	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr5	41000343	rs1001420	G	A	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,64:0.65:99
chr5	41001023	rs2167229	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr5	41004396	rs7712140	G	T	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.24;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	41004396	.	GTTTCTGTTCA	TTTTCTGTTCA,TTTTCTGTTCT	1087	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=1;MMLQ=25;MQ=60.0;NF=56,35;NR=20,15;PP=377,1087;QD=5.41804227036;SC=ACCTAAACCTGTTTCTGTTCA;SbPval=0.5;Source=Platypus;TC=77;TCF=57;TCR=20;TR=76,50;WE=41004414;WS=41004386;set=Platypus	GT:AF:DP	0/1:0.99:77
chr5	41004406	rs7711722	A	T	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=-1.833;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:32,67:0.68:99
chr5	41004807	rs2305314	C	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr5	41005515	.	A	AG	53.70	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	41005522	.	C	CT	130	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=43.33;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	41005527	rs58129703	C	CTCCT,CCCTCCT	129	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=5;set=Intersection	GT:AF:DP	1/1:1.00:4
chr5	41005791	rs10941529	T	C	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.655;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:29,58:0.67:87
chr5	41008780	rs2271704	A	G	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	41009899	rs1878290	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr5	41012615	rs6876879	AA	GC	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,54:0.73:74
chr5	41018452	rs10054110	A	T	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.065;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:165,62:0.27:227
chr5	41019229	rs896118	A	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.147;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.844;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr5	41032998	rs325831	A	G	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	41033112	rs4957367	G	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:147,84:0.36:231
chr5	41033909	rs143823987	ATCTATCTATCTATC	A	3264.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:27,83:0.75:110
chr5	41033931	.	C	CTATCTATT	762.73	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:99,34:0.26:133
chr5	41033992	rs67027762	G	T	2071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=-4.136;QD=5.23;ReadPosRankSum=-1.122;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:271,125:0.32:396
chr5	41034181	rs325833	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	41039000	rs325849	A	G	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	41042284	rs325854	G	T	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	41045730	rs11297360	CT	C	1072.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr5	41045768	rs325860	G	A	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	41045835	rs6864243	C	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:149,73:0.33:222
chr5	41048388	rs325861	T	G	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:34,66:0.66:100
chr5	41049389	rs325863	T	C	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	41049397	rs325864	C	T	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	41050999	rs325866	C	T	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	41054934	rs325874	A	G	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:80,162:0.67:242
chr5	41057562	rs618334	T	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	41061716	rs865093	A	G	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	41061871	rs587412	T	C	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	41069734	rs10512757	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr5	41069852	rs13174484	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr5	41069952	rs35526955	CCTCT	C	391.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	41070840	rs1423391	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:217,84:0.28:301
chr5	41154150	rs4957374	A	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr5	41158671	rs10075985	T	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr5	41158863	rs6866352	G	A	5962.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	41160293	rs62361567	A	G	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:57,107:0.65:164
chr5	41199959	rs1801033	G	T	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr5	41381901	rs35812696	T	TC	105.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr5	41382681	rs319013	G	T	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.054;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:83,51:0.38:134
chr5	41382691	rs545358	C	A	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	41475766	rs318039	C	T	4281.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:96,190:0.66:286
chr5	41807543	rs77000151	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr5	41915982	rs13162569	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:79,30:0.28:109
chr5	42565843	rs12521020	C	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr5	42566166	rs10941579	A	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr5	42646260	rs11415813	C	CT	377.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr5	42700044	rs6179	A	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:167,80:0.32:247
chr5	42713472	rs33972388	TG	T	254.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr5	42718335	rs76362844	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr5	42719239	rs6180	A	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.895;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.805;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:165,58:0.26:223
chr5	42769844	rs1109882	G	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.372;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr5	42799719	rs4041462	T	TTTA	929.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr5	42800724	rs6413428	A	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr5	42801268	rs3877899	C	T	4926.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:101,217:0.68:318
chr5	43039793	rs1054428	T	C	5606.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:108,247:0.70:355
chr5	43066712	rs13167991	G	A	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr5	43066774	rs316408	T	C	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	43122371	rs11287008	T	A	184.31	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	43173567	rs3752831	A	G	5055.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:108,230:0.68:338
chr5	43175103	rs35397154	C	T	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:56,92:0.62:148
chr5	43292483	rs113830463	C	CTTACTATGAA	602.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr5	43292908	rs55794239	C	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	43294357	rs138459217	TAAGTAA	T	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-2.699;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr5	43296165	rs12520012	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	43297032	rs3733768	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr5	43297144	rs3733769	A	G	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-1.202;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:174,99:0.36:273
chr5	43298557	rs35239179	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr5	43487874	rs3776423	T	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr5	43492265	rs6876588	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	43492978	rs10039298	G	A	5795.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	43493592	rs7732089	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	43505993	rs7710628	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:123,57:0.32:180
chr5	43509348	rs6872851	T	A	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	43509462	rs11415989	T	TC	2570.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	43527673	rs4318791	C	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	43530035	rs6866325	G	C	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-0.005;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:107,68:0.39:175
chr5	43533992	rs11741521	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	43535754	rs6869933	G	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.026;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr5	43609272	rs12187908	T	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:160,65:0.29:225
chr5	43609343	rs10057103	C	T	2022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-1.539;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:168,110:0.40:278
chr5	43612984	rs139409541	T	TA	234.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr5	44809162	rs3747479	G	C	9863.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr5	49698180	rs13172025	G	A	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:61,89:0.59:150
chr5	49698977	rs201510379	T	TA	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.581;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.538;QD=0.80;ReadPosRankSum=0.133;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:97,26:0.21:123
chr5	49698986	rs13154223	C	A	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.037;QD=9.31;ReadPosRankSum=0.961;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:67,70:0.51:137
chr5	49701755	rs2271236	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr5	49963235	rs62366937	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=0.566;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	50040778	rs282561	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	50045967	rs2442107	G	T	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.302;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=1.055;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:85,23:0.21:108
chr5	50046139	rs282553	A	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr5	50052800	rs282551	T	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr5	50052888	rs282550	C	A	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.315;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:69,31:0.31:100
chr5	50053015	rs282549	G	A	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.603;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.990;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:129,64:0.33:193
chr5	50055456	rs201071119	C	CT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=2.207;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr5	50057729	rs282547	G	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr5	50084508	rs10683094	C	CCTT	1029.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr5	50122645	rs35290606	GT	G	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=1.995;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr5	52084365	rs10067659	G	C	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	52084441	rs2897351	C	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	52096889	rs1499280	C	A	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	52097764	rs11886	T	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr5	52157374	rs2447867	T	C	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	52161500	rs11427012	G	GC	3003.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:68,86:0.56:154
chr5	52189765	rs35782834	C	CT	79.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=0.785;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr5	52193237	rs870992	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr5	52193287	rs1531545	C	T	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	52193414	rs377107895	C	CA	10512.73	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr5	52193518	rs17829997	A	C	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	52201508	rs62357156	T	A	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	52204943	rs1478441	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr5	52223350	rs923837	A	G	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:204,86:0.30:290
chr5	52235802	rs1904165	T	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	52235854	rs2447874	T	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr5	52243059	rs3764924	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	52243361	rs3764923	A	C	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:39,96:0.71:135
chr5	52248291	rs1054085	T	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	52285117	rs28095	T	C	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	52337908	rs3212441	C	T	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:94,49:0.34:143
chr5	52338083	rs1363192	T	G	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:90,55:0.38:145
chr5	52341064	rs1421937	A	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.729;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr5	52344610	rs1421933	A	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	52347369	rs1126643	C	T	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.013;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:210,78:0.27:288
chr5	52351413	rs1062535	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:166,76:0.31:242
chr5	52354103	rs996765	A	T	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	52355854	rs2303127	T	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:85,41:0.33:126
chr5	52358761	rs35940809	TA	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=5.726;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.915;QD=0.80;ReadPosRankSum=0.756;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr5	52366138	rs2112290	G	A	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	52367666	rs2287872	A	T	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	52367706	rs2287871	T	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:79,35:0.31:114
chr5	52368922	rs984966	T	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr5	52370174	rs3212591	G	A	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:151,83:0.35:234
chr5	52379277	rs2303122	C	T	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:163,90:0.36:253
chr5	52396439	rs3214755	GA	G	1544.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	52404312	rs153602	C	T	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	52405377	rs142643273	C	CCGGGGG	977.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr5	52405432	rs62359375	T	A	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=7.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.373;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:61,35:0.36:96
chr5	52780143	rs41270301	G	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.301;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr5	52781376	rs33951575	GTT	G	2748.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.11;SOR=2.056;set=HC	GT:AD:AF:DP	1/1:17,97:0.85:114
chr5	52781597	rs722910	A	T	376.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:108,35:0.24:143
chr5	52856504	rs2279516	G	C	1923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-0.286;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:47,90:0.66:137
chr5	52856716	rs1532163	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	52899166	rs11414085	C	CTTT	776.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.361;QD=14.12;ReadPosRankSum=0.488;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr5	52942083	rs31304	A	C	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	52942197	rs31303	A	G	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:93,157:0.63:250
chr5	52954280	rs1490769	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr5	52978774	rs2290696	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr5	52978776	rs3085740	GGATT	G	984.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	53371315	rs70986658	C	CT	246.70	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr5	53371333	rs156384	A	G	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	53450542	rs157072	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	53606295	rs35941	T	C	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	53814052	rs2548615	T	C	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	53814394	rs2548614	T	C	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	53815240	rs61739378	G	C	8022.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr5	54153803	rs10040872	C	T	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	54154209	rs3916738	G	A	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	54154328	rs4242050	C	T	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	54252345	rs6877572	T	C	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	54252463	rs6893219	C	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	54253339	rs2897761	T	C	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	54253555	rs3815922	A	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	54253581	rs3815923	A	G	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr5	54253754	rs6883914	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	54403957	rs3104233	T	C	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	54404015	rs1875506	C	T	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	54410120	rs3104230	A	C	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	54424226	.	G	GA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.985;QD=0.84;ReadPosRankSum=-0.509;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr5	54433393	rs336081	G	A	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	54439466	rs1021580	G	A	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	54459961	rs381852	A	G	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	54468577	.	CTTTTTTTT	C	813.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.447;QD=38.75;ReadPosRankSum=0.909;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr5	54468921	rs336115	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	54516521	rs6879219	G	A	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	54516752	rs3111181	C	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	54517102	rs34101652	C	CT	186.06	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr5	54518660	rs7730048	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	54557438	rs400437	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	54563775	rs143912964	TTTA	T	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	54693374	rs230802	G	A	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	54693402	rs230801	G	A	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	54706325	rs139320115	T	TTTTAAA	5702.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	54709943	rs230766	G	A	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	54718618	rs230753	G	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	54721619	rs3217330	A	AT	655.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=-1.657;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr5	54721642	rs230750	A	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	54737538	rs2278258	T	C	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	54737791	rs2278257	G	C	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	54771380	rs6870449	A	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.16;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	54804621	rs7707766	C	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	54830295	rs2292280	T	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	54830380	rs11745331	A	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	54941810	rs6450329	TG	CA	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	54944945	rs35843566	TA	T	204.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	54944976	rs11738633	G	C	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	54948586	rs138550751	C	CA	2141.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	54948598	rs11424790	C	CA	2105.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	54952688	rs11397177	C	CTT	267.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	54960609	rs4865614	A	G	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	54960673	rs4865615	C	G	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	54960687	rs4865616	C	T	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	54964974	rs7737254	A	G	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	54965513	rs11749883	C	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	54965854	rs2408031	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	54986963	rs3846505	A	G	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	54990005	rs7728664	C	T	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	54990035	rs10654694	C	CAA	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.892;QD=19.02;ReadPosRankSum=-1.075;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,31:0.86:36
chr5	54993829	rs3761766	A	G	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	54993929	rs3761767	A	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	55034756	rs113491933	A	AT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.833;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr5	55112262	rs71602915	CT	C	399.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-0.516;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:26,34:0.57:60
chr5	55149407	rs10940487	T	C	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	55155402	rs1009639	C	T	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	55168328	rs71602921	C	CCTT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	55178976	rs13184107	G	A	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	55179052	rs10940491	A	T	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	55196023	rs1148039	C	T	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	55206444	rs161704	G	A	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	55213023	rs161699	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	55246001	rs4865999	A	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	55398217	rs36060683	CA	C	131.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.693;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr5	55398248	rs75623681	G	A	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	55398269	rs318818	G	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	55406952	rs321775	T	C	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	55407542	rs321776	C	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	55412471	rs60779428	C	T	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	55422681	rs321768	C	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	55471908	.	A	C	1011.77	.	AC=2;AF=1.00;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	55472289	rs160936	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	55528572	.	AAC	A	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.175;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr5	55759715	rs157851	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	55807370	rs464605	C	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	55851796	rs35483518	C	CA	293.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.737;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=0.096;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr5	56111751	rs28710284	G	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	56152416	rs832567	C	A	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	56161787	rs832575	G	A	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	56168712	rs2229882	C	T	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	56170813	rs16886448	C	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	56176446	rs9687226	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	56177443	rs702689	G	A	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	56177743	rs832582	G	A	7980.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr5	56177848	rs5868032	TCAA	T	31315.73	.	AC=2;AF=1.00;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	1/1:2,707:1.00:709
chr5	56178111	rs3822625	A	G	9823.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr5	56178217	rs832583	A	C	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,290:1.00:291
chr5	56205643	rs252924	A	G	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	56205673	rs150810813	C	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	56207123	rs2257505	T	A	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	56219698	rs74865790	T	C	5231.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	56224720	rs61154548	C	T	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	56224818	.	T	TCACA,TCACACA	315.74	.	AC=2,0;AF=1.00,0.00;AN=2;DP=10;set=Intersection	GT:AF:DP	1/1:1.00:8
chr5	56224834	rs252891	T	A	324.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	56233541	rs2591968	G	A	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.25;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	56233551	rs2591967	C	G	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=1.377;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	56242774	rs2034244	T	C	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	56246276	rs34804097	A	AAAC	1325.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	56246610	rs2662040	A	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	56255367	rs111894536	AT	A	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.138;QD=2.31;ReadPosRankSum=-1.395;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:78,33:0.30:111
chr5	56526565	rs1544737	G	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	56526783	rs1130203	G	A	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr5	56526819	rs3214438	GT	G	6604.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	56527224	rs1862172	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	56527247	rs1862173	T	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	56542024	rs11349725	TA	T	127.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.319;QD=8.48;ReadPosRankSum=-0.825;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr5	56546749	rs34533194	C	CT	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=2.293;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr5	56547059	rs6893468	G	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	57753456	rs702723	C	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	57754004	rs697135	C	T	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	57754132	rs697134	G	C	4892.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	57754808	rs697133	G	A	5898.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	57754851	rs702722	A	G	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	57913379	rs2279980	A	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr5	58120753	rs75681594	GT	G	324.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	58271713	rs112200987	T	TA	1371.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:3,67:0.96:70
chr5	58284208	rs3805557	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	58284283	rs3805556	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	58286625	rs1553114	C	T	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	58286737	.	GA	G	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.152;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr5	58286836	rs1973451	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	58287553	rs3840337	AAAC	A	1511.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	58289046	rs7737685	G	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	58289334	rs7724713	A	G	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	58295380	rs35776313	G	GTA	683.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr5	58297881	rs2968014	A	G	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.67;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	58297891	rs75394959	A	G	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	58334645	rs2279737	A	G	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	58386812	rs10075104	G	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	58475985	rs9292194	G	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	58476117	rs9292195	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	58489218	rs1445950	G	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	58489384	rs27175	G	A	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	58882331	rs11402131	C	CA	435.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.573;QD=16.14;ReadPosRankSum=1.316;SOR=0.208;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr5	59725671	rs789390	T	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=26.84;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	60083275	rs10072745	C	A	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	60170605	rs4647150	T	C	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	60186618	rs2306350	C	T	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	60186975	rs2306351	C	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	60194107	rs61754098	G	T	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	60199363	rs4647102	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	60200455	.	GTGTGTGTATA	G	98.25	.	AC=2;AF=1.00;AN=2;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	60241142	rs158921	G	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	60369083	rs10471502	A	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	60448903	rs33927273	T	TAA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	60628153	.	G	GGGC	1443.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.385;QD=37.02;ReadPosRankSum=2.111;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:3,36:0.92:39
chr5	60786880	rs7732234	C	T	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	60789972	.	CGG	C	128.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.316;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=11.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.87;ReadPosRankSum=-1.465;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	60789973	.	GGAG	ACGG	370	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=34;MMLQ=24;MQ=60.0;NF=3,7;NR=3,1;PP=370,33;QD=72.2446458104;SC=ACACACACACGGAGAGAGAGA;SbPval=0.13;Source=Platypus;TC=18;TCF=14;TCR=4;TR=6,8;WE=60789983;WS=60789963;set=Platypus	GT:AD:AF:DP	0/1:12,6:0.33:18
chr5	60789973	rs145935854	GGAG	GG	38.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AF:DP	0/1:0.40:10
chr5	60789975	.	A	ACG	128.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.823;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=11.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.87;ReadPosRankSum=-1.465;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	60790037	rs77230862	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	60982634	rs113752989	A	AT	513.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr5	60982841	rs16893687	G	A	6508.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	60999768	rs436696	C	T	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	61604204	rs4700006	C	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	61604456	rs4441833	T	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	61733348	rs153857	G	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	61745737	rs11329383	CT	C	1199.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.616;MLEAC=2;MLEAF=1.000;MQ=60.47;MQRankSum=0.291;QD=18.46;ReadPosRankSum=-1.576;SOR=1.397;set=HC	GT:AD:AF:DP	1/1:1,64:0.98:65
chr5	61762880	rs35119	A	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	61772535	rs26635	G	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	61781127	rs26640	C	A	51.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	61785936	rs26644	T	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	61826663	rs32179	G	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	61857118	.	C	CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGG	1133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=22.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.43;ReadPosRankSum=0.848;SOR=6.803;set=HC	GT:AD:AF:DP	0/1:3,29:0.91:32
chr5	61874619	.	TA	T	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.136;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:57,39:0.41:96
chr5	63665293	rs56066106	TA	T	248.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.13;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	63665335	rs28615727	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	63890387	rs4700641	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	63989742	rs2305963	G	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	63991473	rs2305962	G	C	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	64023924	rs10471638	C	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	64023981	rs275819	C	T	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	64070617	rs140062546	A	AAATTATGAC	1428.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	64070812	rs10057598	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	64077647	rs55793256	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	64077966	rs2011079	A	G	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	64084746	rs11340181	CT	C	359.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.99;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	64099941	rs200513803	T	TA	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	64181525	.	G	GGTGTGTGTGT	125.52	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.84;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	64273018	rs1309581	G	A	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	64313879	rs2910769	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	64466697	.	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=12.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=1.071;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr5	64483759	rs16893475	T	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	64556514	.	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.126;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr5	64569381	rs17814262	C	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	64569405	rs1423424	T	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	64747918	rs3830368	T	TG	1933.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	64766519	rs368646553	ATT	A	1314.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	64766523	rs114290460	T	A	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.37;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	64766558	rs34345975	AATT	A	2858.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	64857424	rs10560318	AACACAC	AAC,A	2355.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=90;set=Intersection	GT:AF:DP	1/1:1.00:58
chr5	64859592	rs261252	T	A	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	64859884	rs35326591	CTG	C	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	64863320	rs56227785	C	T	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	64863484	rs35529383	T	TA	389.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr5	64864657	rs152063	A	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	64865346	rs149512	A	T	190.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	64865405	rs149208	A	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	64880705	rs10682457	G	GAA	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	64881936	rs27141	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr5	64887472	rs10644434	T	TTATA	623.19	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:1,16:0.94:17
chr5	64890479	rs36135	A	C	1792.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.70;ReadPosRankSum=-1.031;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:5,86:0.95:91
chr5	64906617	rs37330	T	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	64919991	rs154854	G	A	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	64920803	rs37254	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	64925256	rs43207	C	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	64931971	.	C	CT	30	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=15;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=30;QD=16.5;SC=ATACATTTACCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=8;TCF=1;TCR=7;TR=2;WE=64931979;WS=64931961;set=Platypus	GT:AD:AF:DP	1/1:6,2:0.25:8
chr5	64942799	rs154955	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	64942852	.	CT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=4.231;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.394;QD=1.79;ReadPosRankSum=1.791;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr5	64946836	rs154853	G	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	64954159	rs28084	A	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	64956428	rs37349	C	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	64957686	rs37347	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	64957718	rs37346	T	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	64960311	rs36031543	A	ATCTC,ATC	3959.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=124;set=Intersection	GT:AF:DP	1/1:1.00:90
chr5	64968170	rs5868414	AT	A	558.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	65008946	rs3833969	GT	G	1300.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	65018126	rs2548786	C	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr5	65018321	rs2548785	C	G	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	65073224	rs34979	C	A	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	65073389	rs201003071	G	GA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-1.967;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr5	65075858	rs252648	A	G	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	65105622	rs2561196	G	A	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	65108215	rs2254485	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	65288791	rs27132	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	65308055	rs706678	C	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	65317181	rs706679	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	65455258	rs34136434	CT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.789;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr5	65466388	.	AATTT	A	477.73	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr5	66166427	rs1160971	CAT	C	3706.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	66226652	rs80243092	G	A	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	66226741	rs4099838	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	66226798	rs4090993	T	C	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	66282444	rs149234910	A	ATT	1026.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.93;MQRankSum=0.000;QD=36.67;ReadPosRankSum=-0.437;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr5	66300721	rs66551443	A	AT	3314.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:14,154:0.92:168
chr5	66429329	rs2371882	G	T	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	66459878	rs1705399	G	C	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	66480004	rs1697144	T	C	6804.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	67569479	rs2302975	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	67584512	.	AT	A	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.589;QD=1.50;ReadPosRankSum=-0.792;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr5	67587994	rs3730087	C	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	67588000	rs3730088	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	68463606	rs163442	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	68464234	rs163443	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	68470559	rs426392	T	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	68470599	rs3087334	C	CATTA	2898.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	68485366	rs648489	C	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	68491714	rs11283275	T	TAGTCAAG	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	68513572	rs2242351	C	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr5	68525027	rs2932777	C	T	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	68531253	rs2972388	C	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	68546706	rs2972367	A	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	68548351	.	T	A	101	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=20;HapScore=2;MGOF=13;MMLQ=22;MQ=41.84;NF=2;NR=4;PP=101;QD=22.6285354245;SC=TTTTTTTTTTTAAAAAGACAG;SbPval=0.65;Source=Platypus;TC=6;TCF=2;TCR=4;TR=6;WE=68548359;WS=68548341;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	68550631	rs2054975	T	C	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	68550635	rs2054976	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.55;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	68551507	rs2291519	T	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	68558282	rs34449359	G	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	68564985	.	T	TA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.359;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr5	68572668	rs4077460	C	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	68596068	rs28704183	C	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	68599932	.	ATT	A	77.06	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	68602746	rs6881767	G	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	68609885	rs11749723	G	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	68610009	rs28462372	A	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	68667263	.	TCCCC	T	44	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=15;HapScore=2;MGOF=24;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=44;QD=23.5;SC=GAGGGCTTCTTCCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=68667274;WS=68667253;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	68688608	rs299080	T	C	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	68692375	rs34097088	T	TA	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.527;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=1.002;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr5	68695940	rs1045051	T	G	123.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	68696035	rs142095225	G	GTTTATTTA	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	68706252	rs10940223	G	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	68706438	rs6871685	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	68715310	rs1185246	C	T	12145.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr5	68862361	rs375045774	TG	T	324.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=13.143;MLEAC=1;MLEAF=0.500;MQ=48.37;MQRankSum=-4.986;QD=6.37;ReadPosRankSum=1.209;SOR=1.716;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr5	68862362	rs200135651	G	T	199.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=8.816;MLEAC=1;MLEAF=0.500;MQ=48.37;MQRankSum=4.565;QD=3.92;ReadPosRankSum=-2.833;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr5	68862365	rs201465285	G	T	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.500;MQ=48.37;MQRankSum=-0.971;QD=18.38;ReadPosRankSum=-1.906;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:11,41:0.79:52
chr5	70200973	rs189447511	C	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.45;MQRankSum=-6.272;QD=0.60;ReadPosRankSum=2.875;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:71,13:0.15:84
chr5	70247672	rs370788724	A	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	70818329	.	CA	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.905;QD=1.22;ReadPosRankSum=0.778;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr5	70932170	rs7444232	G	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	71403273	rs3112401	T	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	71403306	rs3112402	T	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr5	71411353	.	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	71411718	rs1531312	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	71412165	.	G	A	826.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	71412373	rs1466343	A	G	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	71465361	rs3112399	T	A	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	71519664	rs3209157	C	T	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	71522125	rs9293821	A	T	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	71524163	rs10942927	A	T	7014.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	71528110	rs3213894	T	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	71739546	rs4267851	C	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	71743024	rs10043295	G	C	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	72112421	rs34648	T	C	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	72112430	rs34647	C	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.12;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	72147269	rs34655	A	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	72151858	rs34660	T	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	72168584	.	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=-0.328;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:219,39:0.15:258
chr5	72174432	rs266435	C	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	72174553	rs266436	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	72182743	rs4235663	A	G	224.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	72182857	rs4704045	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	72184098	rs17606	C	T	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	72364673	rs470926	A	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.70;SOR=2.330;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	72378703	rs11313621	AT	A	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.925;QD=9.40;ReadPosRankSum=-1.408;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr5	72419267	rs638333	T	C	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	72419410	rs7731777	A	G	7974.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:1,285:1.00:286
chr5	72742882	rs2972191	T	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	72743003	.	G	A	229.78	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	72743299	.	G	GGC	1577.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=43.83;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	72798502	rs200370518	GTT	G	1250.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.52;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:6,45:0.88:51
chr5	72800408	rs703882	G	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	72800863	rs59856963	C	CT	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=1.134;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr5	72850282	rs343104	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	72851535	rs819584	A	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	72872766	rs1220622	C	T	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	72873925	rs7443182	G	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	72874801	rs12652195	G	A	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	72980869	rs10755296	G	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	73090089	rs12653477	T	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.11;QD=26.75;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	73090165	rs10683146	A	AGTT	6730.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr5	73090261	rs7716253	T	C	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	73091126	rs2973549	T	A	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	73091228	rs2973548	C	T	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	73142296	rs2973571	C	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	73144845	rs2973568	A	G	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	73148481	rs2973566	G	A	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	73153389	rs10543482	TACAC	T	2336.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	73160730	rs1014550	G	A	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	73160775	rs1979551	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	73163831	rs2931423	C	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	73163861	rs2931422	C	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	73163965	rs2973558	C	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	73164138	rs34777247	AT	A	65.37	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:1,5:0.83:6
chr5	73178550	rs2973528	T	G	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	73189145	rs2973529	G	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	73190119	rs2973530	T	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	73197185	rs434065	A	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	73197200	rs384927	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	73207372	rs1478453	T	A	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	73930442	rs300240	C	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	73930751	rs300239	C	T	6514.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	73931246	rs442425	T	C	14635.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr5	73932315	rs9176	T	C	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	74011284	rs78084621	CT	C	1200.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	74011541	rs72764638	T	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.54;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	74021846	rs5868753	TACTCAA	T	9205.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	74028752	rs10644320	G	GAC	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr5	74046464	rs17852781	C	T	9753.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr5	74054595	rs10515191	A	G	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.456;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	74063154	rs1043968	C	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	74069863	rs6874609	A	G	6570.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr5	74072339	rs58655773	G	GA	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	74097552	rs17670897	T	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	74324437	rs3811986	G	A	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	74324548	rs3811987	G	A	5507.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	74324902	rs4704166	C	T	5975.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	74364300	rs10942729	G	A	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	74376309	rs4447963	A	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	74376571	rs4345300	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	74387317	rs10462512	C	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	74400386	rs961098	G	C	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	74433839	rs5868765	G	GA	439.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.87;MQRankSum=0.582;QD=15.70;ReadPosRankSum=-1.339;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr5	74442410	rs1422699	G	A	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	74442920	rs6888707	A	G	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	74443132	rs1422698	C	T	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	74450278	rs7704104	T	A	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	74484275	rs10050948	C	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.531;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	74491715	rs10563854	TTCA	T	10346.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	74506658	rs2219745	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	74518317	rs57235500	T	TA	82.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.34;ReadPosRankSum=-0.180;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	74526489	rs11295265	GT	G	6496.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	74639576	rs3064877	C	CAA	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	74651084	rs3846662	A	G	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	74655726	rs3846663	C	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	74675076	rs7700468	T	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	74681773	rs698912	T	C	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr5	74685520	rs3761743	A	G	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	74877266	rs3213801	C	T	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	74877803	rs5744672	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	74882681	rs4703674	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	74886384	rs1018119	G	A	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	74921686	rs9332464	G	A	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	74921883	rs17739580	C	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	74921896	rs7717505	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	74951901	rs7717355	G	A	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	74962768	rs6453139	C	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	74986481	rs4704230	T	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	74988369	rs888789	A	G	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	75001582	rs17672542	A	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	75003678	rs2307111	T	C	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	75427518	rs1423099	C	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	75427935	rs10070440	G	A	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr5	75470086	rs10805899	T	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	75581279	.	A	G	965.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr5	75648846	rs246792	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	75648940	rs66963762	AT	A	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=3.511;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr5	75699599	rs62363210	T	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	75888788	rs3736394	G	A	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	75904811	rs3822529	C	G	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	75923141	rs2455221	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	75923285	rs2431351	C	T	8863.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	75923294	rs2431352	T	G	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	75923307	rs2909888	A	G	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	75923393	rs2431353	T	C	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	75923459	rs2455222	G	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	75923494	rs2431354	C	T	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	75924472	rs2455225	A	G	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	75927595	rs431160	C	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	75927938	rs441157	A	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	75932869	rs2910819	C	T	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	75932965	rs2455230	G	C	8107.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	75933097	rs2937415	C	T	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	75936944	rs457821	G	A	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	75948474	rs2252231	T	C	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	75948650	rs2431363	A	G	8121.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr5	75948685	rs2431362	G	A	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	75948799	rs2455215	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	75949844	rs457127	C	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	75949876	rs466393	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	75950193	rs462307	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	75950707	rs465731	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	75950997	rs459846	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	75960818	rs11449450	T	TA	987.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	75960825	rs253092	G	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	75960865	rs253093	T	C	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	75967514	rs34357630	GA	G	91.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.28;ReadPosRankSum=0.778;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:2,9:0.82:11
chr5	75969747	rs41271836	A	G	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	76003254	rs463188	A	T	167.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	76003258	rs464494	C	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	76128521	rs616235	G	A	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	76129053	rs631465	T	C	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	76171252	rs1320308	A	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	76326885	rs2278241	G	A	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	76335623	rs35359101	A	C	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	76351308	rs74848595	C	A	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	76359024	rs34400049	C	A	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	76373240	rs2303713	AG	GC	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	76607627	rs11413850	C	CT	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr5	76621612	rs4133658	A	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	76627436	rs9687030	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	76633297	rs7717046	G	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	76645529	rs2306343	G	A	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	76703374	rs3101866	A	G	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	76704849	rs186753	T	C	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	76707438	rs35864749	A	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	76708987	rs335614	A	G	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	76709249	rs335615	A	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	76709268	rs335616	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	76714380	rs2242159	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	76717583	rs13160107	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	76722442	rs62362531	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	76736884	rs12188735	A	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	76785406	.	GA	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.057;QD=0.85;ReadPosRankSum=-0.008;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr5	76916335	rs5868876	G	GC	5627.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	76926578	rs13357072	T	C	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=1.571;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	77004275	rs352548	A	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	77425028	rs6453373	A	T	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	77745853	rs66744502	C	CA	3852.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	77745862	rs200104831	G	GT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.800;QD=1.74;ReadPosRankSum=-0.540;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr5	77755035	rs6453391	T	C	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	77784738	rs2241566	A	G	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	78135276	rs25415	T	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr5	78181477	rs1065757	C	T	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	78340062	rs248384	T	C	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	78340257	rs248385	C	G	7412.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	78340286	rs532964	A	G	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	78340411	rs531982	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	78351636	rs2253262	A	C	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr5	78373431	rs682985	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	78421780	rs694290	G	A	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	78421959	rs3733890	G	A	6514.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	78573790	rs13182512	A	T	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	78573970	rs16876598	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=26.48;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	78573993	.	TAAA	T	233.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=7.533;MLEAC=2;MLEAF=1.000;MQ=61.29;MQRankSum=-2.006;QD=13.75;ReadPosRankSum=1.442;SOR=3.229;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr5	78586914	rs10043008	G	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	78587135	rs17234734	A	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	78596044	rs10514159	T	C	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	78608354	rs35852788	CT	C	285.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=0.644;QD=12.99;ReadPosRankSum=1.195;SOR=0.160;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr5	78610750	.	CA	C	353.73	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	78692529	rs6872497	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	78742980	rs6862358	G	A	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.52;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	78746699	rs13356332	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	79086883	rs1129770	G	A	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	79095119	rs3749682	T	A	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	79172136	rs265005	A	G	8569.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	79286419	rs61998228	C	T	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	79368016	rs256437	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	79369213	rs3749685	G	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	79373803	rs2288394	C	T	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	79375724	rs2288395	G	C	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	79443169	rs7712447	A	G	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	79473059	rs11429938	C	CT	2213.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	79551575	rs76823721	C	CG	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	79551867	rs1966470	A	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	79616083	rs1862136	G	C	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	79731608	rs2544599	G	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	79733079	rs2544600	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	79734297	rs259028	T	C	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	79734409	rs259029	G	A	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr5	79735858	rs168939	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	79739685	rs259033	G	A	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	79741018	rs259034	T	A	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	79743821	rs2251759	T	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	79745469	rs249038	A	G	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	79747291	rs249039	A	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	79751332	rs249040	A	G	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	79773028	rs166062	T	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr5	79809658	rs249011	A	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	79950781	rs1650697	A	G	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	79974646	rs836807	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	80021168	rs32951	A	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	80021193	rs245016	C	T	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.86;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	80021445	rs32952	A	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	80149981	rs184967	A	G	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	80160596	rs3991216	AAATG	A	5693.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	80168937	rs26279	G	A	7927.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr5	80338594	rs17410395	T	C	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	80375872	rs72769300	A	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	80376142	rs27650	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.71;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	80383136	.	C	T	5876.77	.	AC=2;AF=1.00;AN=2;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	80409229	rs26422	C	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	80409526	rs34193571	T	C	15367.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr5	80409729	rs10942942	T	C	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	80419349	rs26891	C	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	80423109	rs153244	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	80552960	rs10525993	AGTGTGTGTGTGTGTGTGT	A	854.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=40.70;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	80631511	rs6452399	G	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	80640919	rs147835552	TGCACACCGCTGCCACCTCCTC	T	711.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	80655709	rs13163821	T	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	80716163	rs10746	T	G	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	80724572	rs3764985	G	A	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	80736444	rs9596	A	G	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	80744758	rs3764986	T	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	80756855	rs6893826	A	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	80785011	rs66563423	G	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	81006377	rs13156146	G	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	81354389	rs3734114	T	C	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	81474225	rs9293290	A	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	81538528	rs12654645	C	T	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	81549216	rs1864183	C	T	6731.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr5	81549240	rs1864182	C	A	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	81549280	rs1864181	C	T	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	81572184	rs226200	G	C	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	81572464	rs226199	G	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	81573992	rs226198	C	T	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	82135819	rs139917914	T	TA	522.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=7.453;MLEAC=2;MLEAF=1.000;MQ=60.37;MQRankSum=-2.400;QD=18.01;ReadPosRankSum=-1.803;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:4,25:0.86:29
chr5	82135830	.	C	CA	602.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.572;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.408;QD=17.22;ReadPosRankSum=-0.708;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr5	82136024	rs79512808	T	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	82136064	rs113309601	T	TTCTTC	2739.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	82360783	rs2306336	T	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	82407098	rs1478482	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	82499307	rs2662238	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	82816190	rs61754531	A	G	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	82833145	rs2548541	G	A	8248.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr5	82833369	rs309559	A	G	7575.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	82834299	rs188703	G	A	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	82834630	rs309557	T	C	8470.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr5	82835545	rs160279	A	G	6402.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	82835724	rs160278	T	A	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	82837631	rs160277	G	T	8336.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr5	82843711	rs3842065	T	TATC	1166.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	82849120	rs6873404	T	A	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	82850631	rs2290673	A	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	82875800	rs308365	C	T	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	82940273	rs2242128	C	G	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	82940510	rs1457081	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	83239132	rs201546691	G	GA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=2.674;QD=1.47;ReadPosRankSum=1.423;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr5	83259225	rs11746605	G	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	83343964	rs2301088	A	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	83433000	.	C	CAT	2969	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=21;MQ=59.81;NF=17;NR=16;PP=2969;QD=20;SC=TGTGTGTATACATACACACAC;SbPval=0.14;Source=Platypus;TC=102;TCF=66;TCR=36;TR=33;WE=83433015;WS=83432990;set=Platypus	GT:AD:AF:DP	1/1:69,33:0.32:102
chr5	83433002	.	TAC	T	867.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=10.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-0.250;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:78,43:0.36:121
chr5	83433004	rs350490	C	T	1640.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.204;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=7.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=0.579;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:52,73:0.58:125
chr5	83433006	rs200843007	C	T	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.321;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:96,38:0.28:134
chr5	83476194	rs163715	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	85586584	rs10038100	C	T	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.08;QD=32.59;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	86564995	rs3734000	T	A	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	86627136	.	T	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.156;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:82,17:0.17:99
chr5	86629061	.	C	CT	108.73	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr5	86633973	rs3752862	G	A	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	86637164	rs35694079	G	GA	60	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	86667856	rs35014912	G	GA	1295.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	86695274	rs2230641	A	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	86697387	rs3093816	A	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	87497977	rs358289	C	T	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	87502325	rs357515	G	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	87963272	rs5869431	G	GA	2021.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	87968912	.	CA	C	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.921;QD=1.93;ReadPosRankSum=-0.408;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:107,52:0.33:159
chr5	88018388	.	G	GA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-1.232;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr5	88025845	rs34297769	CA	C	433.94	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chr5	88416255	rs139453030	A	AAC	701.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr5	88416354	rs9293511	C	T	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	89703641	rs4873	C	G	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	89705752	rs11315430	GC	G	510.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	89769728	rs2162986	T	C	6478.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	89781594	rs2115500	C	T	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	89807711	rs6897910	G	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	89814604	rs1305059	G	GTGACC	2711.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	89815312	rs34548009	G	GA	1281.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:3,57:0.95:60
chr5	89816299	rs171790	C	A	7288.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr5	89816309	rs35118083	A	AT	6378.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	89816383	rs13182165	G	A	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	89820984	rs10069050	T	C	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	89825210	rs603870	G	A	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	89909972	rs11286344	GA	G	300.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.482;QD=11.57;ReadPosRankSum=0.903;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr5	89989749	rs111033452	C	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	90002220	.	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=4.380;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.675;QD=0.86;ReadPosRankSum=-1.035;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:68,17:0.20:85
chr5	90059080	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=4.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-1.590;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:62,13:0.17:75
chr5	90107108	rs2438374	A	G	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	90119324	rs2438378	G	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	90151589	rs2247870	G	A	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	90445829	rs35858094	T	TTC	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=61.46;MQRankSum=0.000;QD=11.02;ReadPosRankSum=2.931;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:10,24:0.71:34
chr5	90449031	rs7726023	T	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	90669400	rs6452952	A	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	93388777	rs148770534	T	TATAG	632.86	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:1,15:0.94:16
chr5	93410244	rs7732578	C	T	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	93731985	rs308207	A	G	8755.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr5	93987532	rs6891545	C	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	93990099	.	GA	G	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.349;QD=6.43;ReadPosRankSum=-1.164;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr5	93998112	rs10684163	G	GTTA	3098.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	94006023	rs7709494	T	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	94006794	rs61141017	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	94006802	rs56813337	A	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	94014800	rs1549179	T	A	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	94022491	rs113089557	TTTAG	T	2026.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=39.74;SOR=2.746;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	94043353	rs7735924	G	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	94046387	rs306573	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	94114594	rs255372	T	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	94114937	rs76995120	C	G	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	94203211	rs159034	G	A	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	94206957	rs201600301	CT	C	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.680;QD=1.88;ReadPosRankSum=0.301;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:95,37:0.28:132
chr5	94230358	rs9885412	C	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	94288790	rs6892227	C	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	94417212	.	C	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.698;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:125,29:0.19:154
chr5	94619545	rs5869672	G	GC	1230.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	94654187	rs255983	C	T	5707.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	94670706	.	T	TTTTCCTGCCTTCCTTCCTTTCC	1672.73	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.96;QD=36.36;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	94728631	rs2546097	G	T	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	94741741	rs253714	C	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	94741837	rs253715	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	94741973	rs253716	T	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	94772540	rs6878669	C	T	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	94784397	rs56864403	ATT	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-1.094;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr5	94805685	rs201030482	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.258;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr5	95011189	rs55796768	A	G	11546.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr5	95011426	rs2548125	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	95018382	rs34895	G	T	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	95084131	rs34896	G	A	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	95091194	rs34898	C	T	15182.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr5	95091201	rs34899	A	G	15517.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr5	95124328	rs3822753	T	G	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	95192736	rs3079945	CT	C	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=5.523;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.720;QD=2.78;ReadPosRankSum=-1.910;SOR=1.702;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr5	95194571	rs13168014	T	C	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	95194593	rs17085193	G	T	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	95414786	rs5869706	T	TTAAAA	1231.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	95730461	rs11741888	C	T	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	95757697	.	TAAAAAAAA	T	873.73	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.72;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	95761432	rs11310306	TA	T	1288.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.390;QD=15.16;ReadPosRankSum=-0.646;SOR=0.437;set=HC	GT:AD:AF:DP	1/1:7,78:0.92:85
chr5	95767920	rs3792747	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	96066652	rs151904	C	T	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	96071780	rs13183352	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	96076487	rs7724759	G	A	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	96078309	rs26503	G	A	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	96079402	rs26506	C	T	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	96086334	rs754615	G	C	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	96089658	rs27583	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	96101031	rs59338324	TAAA	T	941.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=0.891;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:11,42:0.79:53
chr5	96101066	rs11399505	T	TA	1947.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	96101944	rs27524	A	G	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	96101959	rs27525	C	T	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	96107202	rs27689	G	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	96111927	rs142866043	T	TAGCCCATTCATGAAAA	4016.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	96112083	rs1065407	T	G	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	96116109	rs201876997	T	G	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=42.93;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	96116112	rs35237285	AT	A	1527.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;MQRankSum=0.439;QD=18.41;ReadPosRankSum=1.286;SOR=0.522;set=HC	GT:AD:AF:DP	1/1:4,79:0.95:83
chr5	96117300	rs27043	G	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	96118852	rs27044	G	C	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	96118866	rs17482078	C	T	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	96119579	rs70981840	A	ACT	1178.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	96121370	rs11386832	T	TA	1817.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	96121524	rs469783	C	T	9380.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr5	96121715	rs469758	C	T	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr5	96122210	rs10050860	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	96122260	rs30379	T	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	96122281	rs30380	A	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	96124330	rs30187	T	C	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	96124447	rs30186	G	C	5983.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	96125910	rs26510	C	T	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	96126197	rs27710	A	G	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	96126308	rs27529	A	G	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	96127905	rs27640	T	C	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr5	96129512	rs27434	A	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	96129535	rs2287987	T	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	96139066	rs10062964	C	T	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	96139250	rs26653	C	G	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	96208889	rs113565163	C	CA	420.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr5	96219738	.	TTATCTATC	T,TTATC	741	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=3;MMLQ=20;MQ=60.0;NF=0,0;NR=14,14;PP=106,741;QD=7.85714285714;SC=TAATTTGTTTTTATCTATCTA;SbPval=1.0;Source=Platypus;TC=32;TCF=1;TCR=31;TR=14,14;WE=96219753;WS=96219728;set=Platypus	GT:AF:DP	0/1:0.44:32
chr5	96222627	rs13189819	G	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	96230883	rs371137761	A	ATT	1004.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	96231000	rs2549782	G	T	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	96232142	rs2548538	T	A	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	96232222	rs2548537	G	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	96232250	rs34701361	G	GAAA	4147.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	96232286	rs2549785	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	96232345	rs56321917	CAT	C	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	96232402	rs2548536	T	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	96235896	rs2248374	A	G	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	96237114	rs187265	C	G	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	96237326	rs2287988	G	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	96237413	rs171647	C	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	96239294	rs1423568	A	G	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	96244549	rs2549794	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	96244585	rs2548527	A	C	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr5	96244638	rs2549795	A	G	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	96245343	rs2549796	C	T	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	96245439	rs1056893	C	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	96245518	rs2549797	A	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	96249115	rs2255546	C	T	6134.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	96329857	rs27304	G	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	96332085	rs3836862	TC	T	6739.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	96339102	rs3214461	AC	A	1212.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.65;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	96339273	rs27613	T	G	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	96341750	rs3839297	T	TTA	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr5	96342077	rs3835054	TA	T	326.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.462;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr5	96363407	rs27300	C	T	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	96364063	rs27712	C	T	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	96498783	rs8654	G	A	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	96503378	rs12188395	T	C	4919.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	96503523	rs160632	C	T	9425.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr5	96512865	rs2548319	T	A	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	96512871	rs2544772	T	A	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	96514626	rs75104853	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	96514717	rs62377109	C	G	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	96519094	rs3806945	A	G	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	98109838	rs2662263	A	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	98194781	rs330421	C	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	98194888	rs330422	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	98199204	rs161941	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	98205326	rs112852027	G	GCA	442.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr5	98210868	rs162140	T	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	98221383	.	A	AT	1856.73	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	98229349	rs55677526	G	A	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	98230177	rs55704716	A	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	98232809	rs326468	T	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	98236804	rs148373099	G	GA	2408.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr5	98239390	rs116036483	C	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	98261812	rs115279292	T	C	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	101592742	rs174414	T	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	101592809	rs261101	T	A	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	101593486	rs398228	CT	AG	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	101595831	rs386464	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	101595885	rs148885155	T	TGA	2249.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr5	101596032	.	AAAAT	A	98	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=9;HapScore=2;MGOF=2;MMLQ=26;MQ=70.0;NF=0;NR=5;PP=98;QD=22.0;SC=ACCTAAAAAAAAAATATATAT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=5;WE=101596043;WS=101596022;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	101596034	rs71586551	A	T	94.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=23.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	101606518	rs33922930	G	GA	905.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:3,42:0.93:45
chr5	101627027	rs841929	T	C	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	101627411	rs2600824	C	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	101627414	rs2548726	A	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	101627435	rs841928	C	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	101631526	rs3114660	C	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	101631592	rs3114659	A	G	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	101632007	.	A	T	1118.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	101834469	rs13190449	G	A	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	102249546	rs6876278	A	G	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	102282472	rs3776873	T	A	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	102295504	rs2195272	G	T	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	102310166	rs3733939	G	A	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	102340782	rs3834262	GATTA	G	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	102345546	rs2230457	A	C	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr5	102355716	rs3215069	CT	C	365.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	102360747	rs17296280	A	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	102423576	rs468844	A	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	102423579	rs469094	A	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	102433409	rs34813	G	A	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.46;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr5	102456254	rs26523	C	T	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	102456304	rs26524	A	G	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	102488571	rs27896	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	102489511	rs34767	T	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	102494751	rs257292	A	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	102512447	rs152134	C	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	102512570	rs11408825	C	CA	2272.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	102520400	rs26821	A	C	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr5	102537200	rs154290	T	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	102537379	rs28025	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	102894673	rs34468716	T	C	8715.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr5	103978969	rs33818	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	107006446	rs35553	T	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.58;SOR=3.187;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	107560101	rs2044710	A	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	107703446	rs34546708	CAAG	C	1956.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	108168451	rs376837075	CT	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.482;QD=2.12;ReadPosRankSum=-0.762;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr5	108203451	rs34195313	G	GT	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.638;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:146,46:0.24:192
chr5	108290403	rs66958414	GT	G	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:4,43:0.91:47
chr5	108295157	rs10638158	A	AAAAG	951.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	108386985	rs2416195	A	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	108679870	rs142828555	T	TTTAA	2649.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=46.49;SOR=1.823;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	108680647	rs441798	C	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	108691738	rs2431253	A	T	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	108713970	rs10042721	C	T	6683.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	108713982	rs12523186	T	C	6676.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	108714298	rs1045706	T	C	10539.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr5	108717157	rs2288531	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	108719151	rs1045704	G	A	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	109124793	rs17162238	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	109125072	rs2112212	C	G	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	109125258	rs17162241	C	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	109125416	rs1019446	T	C	150.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	109152897	rs56239994	G	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	109155658	rs10055921	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	109159348	rs28756687	G	A	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	109181682	rs3186988	A	T	10462.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr5	109668544	rs2416239	T	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	109760504	rs11454377	T	TA	1631.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;MQ=60.27;set=Intersection	GT:AD:AF:DP	1/1:3,75:0.96:78
chr5	109940707	rs6897672	G	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	109953869	rs6882222	T	C	126.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	109963430	rs6886702	A	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	109976588	rs10043185	G	A	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	110092531	rs3214016	A	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	110096939	rs7724788	G	A	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	110097554	rs3844597	C	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	110408743	rs11466742	C	G	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	110409067	rs2289277	C	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	110436450	rs10038177	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	110443228	rs10043631	C	T	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	110446455	rs34323614	A	AT	1448.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:4,68:0.94:72
chr5	110446741	rs13161853	C	A	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	110448751	.	A	AT	848.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.44;MQRankSum=0.000;QD=13.26;ReadPosRankSum=0.805;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:16,48:0.75:64
chr5	110456263	rs17624563	C	G	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	110459947	rs2290680	G	C	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	110461231	rs72784248	G	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	110679657	rs446176	C	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	110710360	rs306067	G	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	110710699	rs5870446	A	AG	2373.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	110712491	rs306129	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	110730557	rs523389	C	T	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	110784822	rs2116824	A	G	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	110819753	rs25925	G	C	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	111013858	rs26042	G	A	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	111066697	rs11559	T	C	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	111070298	rs3756605	T	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	111071106	rs3797722	T	A	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	111071297	rs3797723	A	G	8940.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr5	111091630	rs144568737	TTAAGA	T	3158.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	111479750	rs62372418	T	C	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	111497358	rs3816657	T	G	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	111500816	.	C	CTAAAA	2090	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=26;MQ=60.0;NF=2;NR=32;PP=2090;QD=62.7352941176;SC=CATTTCTTCTCTAAAATATAT;SbPval=0.9;Source=Platypus;TC=51;TCF=6;TCR=45;TR=34;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/1:17,34:0.67:51
chr5	111500822	.	T	TAAA	2659.73	.	AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=1.850;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	111500824	.	T	C	1028	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=8;NR=33;PP=1028;QD=25.9212490865;SC=CTCTAAAATATATTTGAAAAA;SbPval=0.71;Source=Platypus;TC=44;TCF=10;TCR=34;TR=41;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/1:3,41:0.93:44
chr5	111500824	rs33929905	T	TAC	2659.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.50;SOR=1.919;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	111504479	rs7703522	C	T	10057.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr5	111505885	rs1560052	T	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	111506069	rs10040749	G	A	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	111519740	rs1560058	T	C	6638.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	111530284	rs7719346	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	111540950	rs12658467	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	111540968	rs373807306	T	TC	1989.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	111545670	rs890757	C	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	112173584	.	G	C	3246.77	.	AC=1;AF=0.500;AN=2;DP=205;set=Intersection	GT:AD:AF:DP	0/1:67,137:0.67:204
chr5	112175392	.	GACACCCAA	G	4489.73	.	AC=2;AF=1.00;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	112217636	rs111457700	GT	G	116.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.984;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,10:0.83:12
chr5	112217737	rs35726351	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	112222694	rs712662	C	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	112227799	rs712665	A	G	7255.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=27.48;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	112227939	rs712666	T	C	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	112228667	rs430665	G	A	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	112228765	rs459102	C	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=30.08;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	112238039	rs153546	A	C	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	112256814	rs149190	A	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	112257242	rs33570	G	C	276.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	112257251	rs153558	C	T	276.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	112257366	rs153557	A	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	112257591	rs151980	C	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	112257908	rs153556	T	C	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	112312676	rs33555	T	C	11566.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr5	112328377	rs3733969	A	G	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	112343544	rs2052484	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	112346431	rs58980024	TG	T	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=0.420;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:10,34:0.77:44
chr5	112349070	rs9326869	T	C	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	112364945	rs1363333	A	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	112379083	rs4627978	A	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	112379095	rs4277906	T	C	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	112379289	rs2227948	G	A	5881.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	112379434	rs4705755	T	A	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	112384802	rs6594664	G	A	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	112385004	rs7726296	CA	GC	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	112385035	rs7708603	T	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	112389747	rs4705536	C	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	112399791	rs2227947	G	A	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	112406718	rs4705771	A	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	112439941	rs6594681	T	C	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	112479004	rs2227949	T	C	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	112629887	rs485210	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	112676191	rs10900684	A	G	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	112824039	rs348942	T	C	6953.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr5	112849801	rs1862315	A	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	112849823	rs2416281	C	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	112851109	rs1820057	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	112851121	rs1035408	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	112853189	rs1833678	T	C	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	112868693	rs6594732	C	A	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	112874987	rs4334877	C	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	112876889	rs200804870	ATT	A	1091.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.598;QD=20.99;ReadPosRankSum=0.401;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:6,46:0.88:52
chr5	112884197	rs4444963	C	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	112884380	rs6889574	G	A	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	112884594	rs6889501	A	G	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	112884728	rs4639215	G	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	112884752	rs6594734	G	A	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	112888854	.	C	CT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=1.240;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr5	112888875	rs72805421	C	T	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=46.73;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	112888882	rs72805422	A	T	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=39.53;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	112889065	rs60871281	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	112889374	rs10071816	G	A	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr5	112889566	rs34947411	ATCT	A	1974.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	112889608	rs10079758	T	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	112889821	rs140119986	CCTCTA	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	112892000	rs2162842	G	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	112899250	rs6886199	G	A	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	112899300	rs6867181	TG	AA	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	112899702	rs6886628	A	G	8756.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr5	112899876	rs11241214	G	A	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr5	112901494	rs3763139	G	C	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	112917278	rs11748794	T	G	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	112919941	rs2288449	G	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	112926982	rs2303717	A	G	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	112927888	rs113314175	A	ATT	482.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.31;ReadPosRankSum=-0.893;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr5	112927900	rs73242858	A	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	112928865	rs3763138	G	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	112929013	rs1132528	T	A	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	113829121	rs1841251	A	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	114462355	rs2974617	C	T	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	114462404	.	A	T	6337.77	.	AC=2;AF=1.00;AN=2;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	114462589	rs2921623	A	C	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	114462630	rs2974528	T	C	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	114611356	rs267295	A	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	114632423	rs3111171	C	T	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	115167595	rs3215095	CT	C	732.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	115177668	rs144226661	G	GAGGC	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-1.567;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:62,7:0.10:69
chr5	115298232	rs9326980	G	C	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	115298378	rs10062297	C	T	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	115298475	rs12520255	T	C	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	115298518	rs12522632	A	G	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	115298977	rs1445708	C	T	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	115323489	rs10519436	T	C	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	115323724	rs10519437	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	115329293	rs10478268	T	C	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	115338704	rs1346479	T	C	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	115338732	rs1560080	G	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	115339086	rs6594929	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	115341611	rs10078748	G	T	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr5	115341638	rs10078759	G	C	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	115351498	rs17485148	C	T	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	115394357	rs6860908	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	115426746	rs10065554	T	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	115428334	rs1129494	G	T	5000.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	115428439	rs6894046	T	A	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr5	115469773	rs1129496	C	T	8467.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	115813726	rs34966	A	G	9633.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:1,349:1.00:350
chr5	115814496	rs40102	C	G	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	115827356	rs154599	C	T	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	115827407	rs154600	G	A	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	115837772	rs154466	G	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	115838117	rs54100	C	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	117329051	.	T	TAG	5636.73	.	AC=2;AF=1.00;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	117329138	rs4404718	G	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	117896625	.	G	GTA,GTATA	436.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=21;set=Intersection	GT:AF:DP	0/1:0.76:21
chr5	117938636	rs199946167	CATAT	C	661.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	117938722	rs72663331	T	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	118532210	.	GT	G	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.155;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr5	118556350	rs2271059	C	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	118691929	rs6595185	A	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	118727224	rs3733855	A	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	118788196	rs26180	C	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	118809533	rs10601221	CCA	C	2129.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	118811533	rs25640	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	118813240	rs457106	T	C	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	118813316	rs463513	A	G	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	118831460	rs80063787	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	118837834	rs55708333	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	118845089	rs32663	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	118845139	rs32664	G	A	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	118862735	rs73251672	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	118862971	rs2636961	C	T	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	118877529	rs377089667	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.817;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr5	118877566	rs28943593	C	T	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	118965623	rs2434599	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	120021819	rs1158194	G	A	7895.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr5	121330223	rs6595336	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	121362852	.	TA	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.095;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr5	121515195	rs11957829	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	121518378	rs2303655	T	C	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	121726714	rs1946649	G	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	122012270	rs17132683	C	T	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.86;QD=26.42;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	122012354	rs2407398	A	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	122137708	rs965821	A	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	122161638	rs3213794	A	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	122161961	rs3217227	A	AT	88.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	122163401	rs725638	T	C	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	122165470	rs56262450	TACACACAC	TAC,T	1338.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=60;MQ=60.26;set=Intersection	GT:AF:DP	1/1:1.00:34
chr5	122181225	rs2303048	G	A	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.38;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	122267456	rs246314	C	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	122272641	rs30042	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	122281709	rs5871017	G	GT	1271.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=10.183;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.51;ReadPosRankSum=1.193;SOR=1.731;set=HC	GT:AD:AF:DP	1/1:2,60:0.97:62
chr5	122301079	rs30055	T	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	122359839	rs144851383	G	GAC	714.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	122359840	rs374638812	CGTTTTTT	C	714.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	122372402	rs28373879	G	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	122436528	rs163188	C	G	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	122682154	rs2303719	T	G	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr5	122682348	rs1047438	A	G	14222.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr5	122685801	rs485847	G	A	5470.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	122685906	rs35423173	CT	C	455.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	122714134	rs141010737	TAAAAAA	T	4367.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.242;QD=40.07;ReadPosRankSum=1.659;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:1,108:0.99:109
chr5	122718736	rs6595440	G	C	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	122722370	rs3893854	T	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.71;QD=24.32;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	122727026	rs6876883	G	A	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	122728913	rs35574017	C	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	122734724	rs11419318	T	TA	389.87	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:3,23:0.88:26
chr5	122739421	rs7715577	G	C	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	122754293	rs71574108	GTT	G	803.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.93;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr5	122909345	rs7712330	G	C	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	123973701	rs6896590	T	C	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	123974608	rs4371750	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	125696140	rs11241887	G	A	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	125759524	rs34490811	A	ACT	2259.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr5	125819333	.	T	TA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.516;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr5	125828803	rs4358517	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	125880589	rs2775	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	125887715	rs12514417	T	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	125891516	rs7713264	T	A	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	125895114	rs201981205	TTTTTGG	T	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.477;SOR=1.488;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr5	125929000	rs375060692	AAC	A	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr5	125944219	rs112502491	G	GTGTTTT	1465.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;MQ=60.88;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	126145771	rs2271354	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	126156538	rs6867254	T	G	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	126168563	rs5871235	TG	T	1071.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	126171999	rs1051643	T	C	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	126250459	.	A	AACACAC,AACACACACAC	946.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;QD=49.83;SOR=1.292;set=HC	GT:AD:AF:DP	1/2:0,5,14:0.26,0.74:19
chr5	126383772	.	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=0.135;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr5	126383772	.	GC	AA	37	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=37;QD=45.2339374311;SC=GCGATGTCTTGCCTGCAGTTC;SbPval=0.44;Source=Platypus;TC=8;TCF=2;TCR=6;TR=2;WE=126383781;WS=126383762;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr5	126383773	.	C	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=0.135;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr5	126746277	rs31483	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	126792974	rs3812052	T	A	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	127485599	rs2617618	C	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	127613791	rs426987	C	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.08;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	127614472	rs190450	A	G	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	127622983	rs2042327	C	T	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	127640783	rs27713	G	A	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr5	127640861	rs27855	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	127648188	rs461146	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	127671924	rs32221	A	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	127685135	rs154001	C	T	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	127728681	.	GTC	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.525;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=6.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.947;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr5	128359247	rs31271	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	128732848	rs7443230	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	128863471	rs6595908	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	129015452	rs30645	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	129015668	rs246443	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	129072943	rs1465686	G	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	129084084	rs4836471	G	T	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	129100819	rs35674869	AC	A	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr5	129244133	rs2431206	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	129519874	rs10066410	G	A	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	129521126	rs2015018	A	G	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	130498011	.	CA	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.074;QD=2.06;ReadPosRankSum=-1.526;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr5	130500751	rs2278060	A	C	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	130808198	rs31241	T	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	130831365	rs40400	T	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	130867733	rs1029472	G	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	130982768	rs26006	A	G	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr5	131006082	rs27450	A	G	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	131006356	rs26007	T	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	131008194	rs26008	T	C	9857.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr5	131066577	rs7729787	A	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr5	131066725	rs7730228	C	A	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	131322494	rs77938	C	T	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	131322666	rs67212057	CCACACACTCACA	C	918.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	131324119	rs71970	T	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	131324250	rs3043838	C	CTG	14679.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	131325888	rs422130	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	131326522	rs5871439	AC	A	4934.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,174:0.99:175
chr5	131330054	rs253944	C	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	131593336	rs70974026	C	CG	395.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	131658085	rs270600	T	C	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	131667353	rs273909	A	G	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	131705949	rs2631365	T	C	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	131719999	rs4551059	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr5	131720070	rs274559	A	G	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	131721174	rs274558	A	G	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	131721204	rs274557	T	C	7326.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	131730011	rs1045020	C	T	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	131730052	rs60522531	CA	C	2237.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	131755477	rs4451042	G	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	131785536	rs77450473	G	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	131792639	rs3214157	A	AT	2490.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr5	131796498	rs2522048	T	C	7925.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr5	131796573	rs2522049	T	C	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	131819921	rs2070729	C	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	131821520	rs142244361	G	GAC	198.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr5	131892357	rs2706335	C	T	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	131892979	rs4526098	G	A	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	131995843	rs1295686	T	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	131995964	rs20541	A	G	6393.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	132009710	rs2070874	C	T	8720.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr5	132018132	rs2243289	A	G	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	132018169	rs2243290	C	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	132036252	rs1468216	T	C	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	132042007	rs3798131	T	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	132042146	rs3798130	C	T	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	132044738	rs2299006	C	G	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	132046590	rs7737031	C	T	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr5	132069847	rs9784600	G	T	267.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	132070242	rs7732520	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	132073002	rs2277065	A	G	4884.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=-0.954;SOR=2.411;set=HC	GT:AD:AF:DP	1/1:2,188:0.99:190
chr5	132083458	rs803056	G	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	132084229	rs72799426	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	132084956	rs803055	G	A	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	132086817	rs708461	G	C	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	132093994	rs42403	C	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	132094512	rs112034900	G	A	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	132098242	rs30510	A	G	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr5	132098420	rs30509	A	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	132099999	rs30507	A	G	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	132149684	rs40274	G	C	3914.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	132150948	rs40470	T	G	7628.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	132198199	rs254286	G	A	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	132198287	rs254285	C	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	132220941	rs3835017	CGTGTGT	C	793.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	132227677	rs6596093	A	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	132227750	rs56398801	T	C	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	132231963	rs112679644	C	T	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	132234152	rs34099243	C	CG	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	132234182	rs34333760	CT	C	62.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.84;ReadPosRankSum=2.100;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	132388068	rs76836760	T	G	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	132403057	rs11448270	T	TA	1322.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr5	132403341	rs6596098	C	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	132403359	rs6596099	T	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	132405931	rs113739155	C	CT	210.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=0.665;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr5	132409074	rs56121115	A	G	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	132409650	rs62375234	C	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	132409867	rs62375235	T	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=22.74;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	132412299	rs11747001	A	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	132428498	.	GTTTTTTT	G	2543.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=7.821;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.61;ReadPosRankSum=0.712;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:2,76:0.97:78
chr5	132428510	.	T	C	2529.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.43;ReadPosRankSum=1.550;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:2,76:0.97:78
chr5	132435488	rs4301229	C	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	132437531	rs1131809	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	132559950	rs2303671	T	G	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr5	132561277	rs2241583	G	A	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	132569260	rs35758896	GCCT	G	3607.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	133316325	rs55708320	T	TA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.243;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr5	133316707	.	CT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=2.608;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.714;QD=1.32;ReadPosRankSum=1.707;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:61,22:0.27:83
chr5	133450497	rs173424	A	G	100.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	133477951	rs34995273	G	A	9240.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr5	133537438	rs2302598	T	A	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	133537479	rs2302599	T	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	133541548	rs2239543	A	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	133561589	rs3863186	G	C	10834.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr5	133657610	rs139337657	G	GA	3261.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:5,144:0.97:149
chr5	133873572	rs329126	A	C	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	133873577	rs2304082	C	T	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=1.747;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	133896744	rs2589404	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	133898136	rs10056247	C	T	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	133900111	rs329311	A	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	133902288	rs2044318	C	T	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	133909475	rs329322	G	A	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	133944043	rs201249311	AT	A	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.332;QD=3.30;ReadPosRankSum=1.082;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr5	134011834	.	C	CT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.611;QD=1.85;ReadPosRankSum=-0.137;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:85,27:0.24:112
chr5	134015523	rs10042142	C	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	134033777	rs246341	G	A	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	134106506	rs34760153	C	CA	31.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=-0.992;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr5	134113558	rs254713	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	134126198	rs34125601	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	134164284	rs34675300	GT	G	286.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=0.568;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr5	134192994	.	TAATGCA	T	5160.73	.	AC=2;AF=1.00;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	134331822	rs299363	G	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	134331921	rs299364	T	G	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	134343799	rs177252	A	G	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	134344497	rs299376	T	C	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	134344902	rs299377	T	C	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	134344929	rs299378	C	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	134346304	rs877812	G	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	134364406	rs71660434	TCCGCGC	T	747.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	134364518	rs479632	C	G	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	134365091	rs474853	T	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	134368721	rs10716861	CA	C	779.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	134870913	rs8192559	G	A	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	135138782	rs11738183	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	135178124	rs2304075	T	C	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	135186075	rs2304077	A	G	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr5	135188214	rs2304078	G	C	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	135207382	rs2304080	C	T	6898.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	135215575	rs2269926	A	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	135215835	rs71857174	C	CT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.823;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.015;QD=0.49;ReadPosRankSum=-0.189;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:81,17:0.17:98
chr5	135276201	rs1160982	AGTT	A	3654.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	135276314	rs40986	C	T	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	135276701	rs31548	T	C	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	135276814	rs2066913	G	A	6072.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	135276847	rs31547	T	C	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	135277394	rs11376205	G	GT	1292.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	135283222	rs977691	T	A	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	135287029	rs31517	T	C	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr5	135365006	rs4976361	A	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	135379612	rs4976464	A	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	135382524	rs41298960	C	T	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	135385316	rs17169753	T	C	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	135388663	rs1054124	A	G	7948.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	135391326	rs6860369	A	G	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	135391374	rs1133170	C	T	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	135392426	rs4669	T	C	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	135392507	rs2072239	G	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	135396452	rs13168506	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	135396468	rs13188659	T	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.93;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	135396669	rs6880837	T	C	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	135469527	rs3764941	T	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	135469726	rs10544057	TGGG	T	340.74	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=42.59;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	135469737	.	G	T	349.78	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=38.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	135469770	rs3764939	T	C	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	135489891	rs10479111	A	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	135496820	rs11437885	C	CA	1114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.664;QD=11.15;ReadPosRankSum=1.126;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:31,69:0.69:100
chr5	135496895	rs10563477	TATA	T	1357.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	135498944	rs11318760	AT	A	4642.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr5	135508381	rs4585442	A	G	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	135510033	rs4146185	T	A	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	135512916	rs10078857	C	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	135513085	rs55765823	T	TC	5448.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	135522877	rs66932414	AG	A	7644.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	135522879	rs58669675	T	TAATATA	7644.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	135527905	rs2287963	A	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	135528316	rs6868337	C	G	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	135561133	rs3734123	C	T	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	136315200	rs3217011	AT	A	5734.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	136476436	.	ATTTTTTT	A,ATTTTTTTT	451.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=46;set=Intersection	GT:AF:DP	0/1:0.56:25
chr5	136833955	rs372446202	CCA	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.057;SOR=1.877;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr5	137206560	rs6890689	A	C	9232.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr5	137241856	rs700605	T	C	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	137244517	rs1880458	G	A	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	137257288	rs4304074	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	137259179	rs12187140	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	137259251	rs13188503	C	T	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	137271968	rs7701617	T	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	137281708	rs1125979	A	C	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr5	137292133	rs3836896	C	CA	5552.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	137295823	rs9327802	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	137297923	rs4835738	C	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	137323117	rs7714536	A	G	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	137342589	rs3756686	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	137347403	rs12187885	G	A	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.252;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	137347498	rs10064910	G	A	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	137354851	rs66908638	CA	C	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr5	137372207	rs6596419	A	T	6940.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	137420376	rs4835762	T	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	137426447	rs6596422	G	A	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	137427274	rs3860103	G	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	137454358	rs6878575	C	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	137476416	rs412051	T	C	6943.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	137485292	rs217270	C	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	137500665	rs11750814	G	A	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	137506434	rs13155519	G	A	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	137507104	rs11303706	TA	T	1577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.428;QD=11.27;ReadPosRankSum=1.964;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:27,113:0.81:140
chr5	137513369	rs10671440	G	GA,GAA	1663.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.80;MQRankSum=0.438;QD=23.77;ReadPosRankSum=-0.412;SOR=1.318;set=HC	GT:AD:AF:DP	1/2:3,20,47:0.29,0.67:70
chr5	137622364	.	G	C	478.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr5	137661434	rs3734165	T	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	137664241	rs11567968	A	G	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	137673623	rs56316522	C	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	137682714	rs2269953	T	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	137708434	rs4835678	C	T	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	137710013	rs12522867	T	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	137717265	rs6865472	G	A	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	137733891	rs17294563	A	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	137735754	rs4835680	A	T	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	137754695	rs7726234	T	C	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	137754808	rs7706614	G	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	137760048	rs41300795	G	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	137760083	rs740077	A	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	137766066	rs61749634	G	A	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	137775581	rs982085	C	G	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	137775613	rs72803898	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	137776931	rs2269947	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	137777269	rs12516269	A	G	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	137780336	rs4835794	T	C	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	137846155	rs4835685	A	G	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	137847078	.	TACACACACAC	T	1900.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.90;QD=43.20;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	137847092	rs71574422	TACACACAC	T	1777.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.82;QD=39.51;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	138148064	rs13154573	T	C	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	138216625	rs5871683	G	GA	872.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.500;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=7.279;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.18;ReadPosRankSum=1.792;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:4,44:0.92:48
chr5	138221989	rs288028	G	C	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	138223202	rs61736921	C	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.809;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:105,20:0.16:125
chr5	138266546	rs1059110	G	A	5906.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	138356756	rs10077896	G	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	138356775	rs10077796	C	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	138456815	rs3088052	T	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	138456994	rs11750382	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	138473077	rs11431215	C	CA	2732.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	138642997	rs112107315	A	AT	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	138643062	rs12153162	T	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=2.206;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	138713959	rs6596474	A	C	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	138714474	rs11950646	G	A	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	138718476	rs11242461	T	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	138718878	rs59914331	C	CA	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	138720156	rs12515989	C	T	12059.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr5	138720336	rs6596476	T	C	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	138723143	.	C	CA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.439;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr5	138723168	.	G	GT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.354;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr5	138724126	rs33937093	TG	T	1586.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	138724457	rs9327846	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	138728483	rs10078623	A	G	4182.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	138732579	rs10900862	C	T	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	138738178	rs4074032	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	138754741	rs4835728	T	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	138773090	rs10900864	A	G	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	138775173	rs3923059	T	C	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	138852369	rs13153461	G	A	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr5	138857919	rs1131769	T	C	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	138861146	rs7447927	C	G	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	139213452	rs4912884	A	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	139216901	rs11440487	A	AG	4158.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	139422531	.	CGCT	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.707;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:138,15:0.10:153
chr5	139493895	.	TGGC	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.720;QD=1.60;ReadPosRankSum=0.603;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:109,15:0.12:124
chr5	139641896	rs6867870	C	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	139660916	rs3777095	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	139661279	rs6893253	T	C	184.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	139889899	.	T	C	194.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.220;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr5	139907713	rs77154401	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.737;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr5	139936680	rs143712554	ACCC	A,AC	6219.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.02;QD=34.75;SOR=4.145;set=HC	GT:AD:AF:DP	1/2:0,131,48:0.73,0.27:179
chr5	139941228	rs250430	A	G	7934.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	140011468	rs4914	C	G	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	140024042	rs753280	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	140024432	rs702399	C	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	140024491	rs702398	A	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	140027216	rs778593	T	C	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	140027304	rs778594	T	C	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	140027621	.	GTGTGTGTGTATGTA	G	181.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=5.453;MLEAC=1;MLEAF=0.500;MQ=63.27;MQRankSum=0.237;QD=4.66;ReadPosRankSum=-1.280;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr5	140027623	.	GTGTGTGTATGTA	G	533.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=13.394;MLEAC=1;MLEAF=0.500;MQ=63.27;MQRankSum=0.256;QD=14.05;ReadPosRankSum=0.702;SOR=1.571;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr5	140031537	rs1583005	G	A	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	140032871	.	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=1.485;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr5	140037272	rs778596	G	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	140039877	.	CTTTTTT	C,CTT	598.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.92;SOR=1.473;set=HC	GT:AD:AF:DP	1/2:0,6,9:0.40,0.60:15
chr5	140048209	rs2251860	T	C	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	140048267	rs2530245	T	C	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	140048544	rs2286394	C	T	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	140051983	rs2530243	C	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	140052271	rs2563333	A	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	140054257	rs58302597	C	T	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	140054485	rs2530241	C	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	140062547	rs2530239	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	140073883	rs6883035	G	A	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	140075011	rs112793807	C	CAGTTGATAT	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	140077699	rs2530234	A	G	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	140080298	rs801168	T	C	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	140081791	rs809635	A	G	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	140083744	rs17286731	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	140203474	.	C	T	1875.77	.	AC=1;AF=0.500;AN=2;DP=214;set=Intersection	GT:AD:AF:DP	0/1:125,88:0.41:213
chr5	140228164	rs251353	C	A	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	140228410	rs17844322	A	G	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.58;QD=44.46;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	140228413	rs17844323	C	A	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.56;QD=43.64;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	140229086	rs251354	C	G	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	140229680	rs139719626	C	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	140230370	rs369636	AA	CC	14126.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr5	140237387	rs251364	T	G	5150.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	140237548	rs630162	A	G	12339.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:2,452:1.00:454
chr5	140242451	rs11321479	GC	G	2863.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	140242479	rs251369	T	A	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	140248539	rs192231	C	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	140255792	rs251377	C	A	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	140263290	rs251380	T	G	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	140433038	rs2233594	C	T	12142.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr5	140482483	rs31848	G	A	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.26;QD=32.54;SOR=2.701;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	140517174	rs400562	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	140517431	rs246725	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	140530418	rs146982646	G	A	10330.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr5	140559914	rs2740583	T	C	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	140561983	rs2204704	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	140566952	rs998793	C	T	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	140567608	rs11167743	C	T	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	140568034	rs33974901	C	CA	9325.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	140682661	.	T	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.657;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:116,24:0.17:140
chr5	140683265	rs11952797	G	A	12703.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr5	140710705	rs2472647	G	A	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	140741150	.	C	A	3533.77	.	AC=1;AF=0.500;AN=2;DP=474;set=Intersection	GT:AD:AF:DP	0/1:291,180:0.38:471
chr5	140750044	rs6860609	T	C	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	140756269	.	C	T	522.77	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	140774288	rs4912749	T	C	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	140795051	rs369349538	G	C	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	140795128	rs11575963	T	C	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	140803317	.	TG	T	444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.815;QD=15.88;ReadPosRankSum=0.504;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr5	140907266	.	TA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.936;QD=1.43;ReadPosRankSum=1.513;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr5	140915703	rs79832875	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	140940596	rs10491312	A	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	140952996	rs183044866	C	T	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	140955777	rs2302103	C	T	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	140998351	rs2074913	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	141005687	rs2547547	A	G	12335.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr5	141014494	rs2530223	T	C	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	141016276	rs32954	T	C	23058.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr5	141016288	rs1421896	T	G	22047.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr5	141025162	rs456998	G	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	141025581	rs2052455	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	141025929	rs7711960	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	141026094	rs11167754	G	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	141027226	rs58908491	G	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	141027399	rs468968	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	141027462	rs3763121	G	A	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	141034123	rs6580194	T	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr5	141034183	rs28655920	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	141036337	rs7703648	A	G	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	141039160	rs2306338	G	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	141041435	rs3749759	G	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	141049407	rs3763120	G	A	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	141051236	rs12514851	C	T	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	141051925	rs3214933	CT	C	4538.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	141052870	rs440279	G	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	141059158	rs1031904	C	G	12461.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr5	141059649	rs417503	A	G	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	141235896	rs11745262	G	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.28;QD=25.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	141235916	rs145694332	TGGGAGGTTAGACAAGGGCCC	T	918.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	141242633	rs14359	C	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	141247181	.	TA	T	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.168;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:64,36:0.36:100
chr5	141257977	.	AGGCGGC	A	1068.73	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	141304314	rs6580206	T	A	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.531;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=14.83;ReadPosRankSum=-0.041;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:21,91:0.81:112
chr5	141312659	.	CAA	C	249.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.140;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=24.97;ReadPosRankSum=-0.589;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr5	141312676	rs7443118	A	T	175.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.53;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	141324966	.	T	TGCTGCTGCTGCTGCC,TGCTGCTGCTGCTGCTGCC	9446.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=248;set=Intersection	GT:AF:DP	1/2:0.11,0.89:190
chr5	141325249	rs105633	T	C	7044.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	141335241	rs164073	A	G	12779.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr5	141335284	rs164074	G	A	11816.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:2,423:1.00:425
chr5	141336264	rs164075	G	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	141337126	rs164076	C	T	12600.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr5	141337225	rs164077	A	G	10459.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr5	141354220	rs187542	G	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	141357719	rs66768569	TTGTA	T	1659.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	141364511	rs252099	A	G	12180.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr5	141364637	rs252100	C	T	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	141367202	rs374840	GA	TT	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	141371557	rs143763915	CTTT	C	760.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.70;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	141382584	rs252114	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	142393562	rs3822397	G	A	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	142416741	rs192194	T	C	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	142421287	rs59126415	GA	G	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.620;QD=7.42;ReadPosRankSum=0.133;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:29,61:0.68:90
chr5	142421415	rs2270068	T	G	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	142593652	rs258819	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	142601811	rs72399054	TACACACACACACAC	TAC,T	1252.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=41;set=Intersection	GT:AF:DP	1/1:1.00:34
chr5	142671092	rs150299999	A	ATTACTTTTCTTTAGCCTAAG	2551.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	142680344	rs6188	C	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	143059433	rs2042253	T	C	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	143200053	rs161557	C	T	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	143853692	rs151242810	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=23.20;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	145144419	rs338887	G	T	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	145176221	rs338898	C	T	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	145197411	rs6870210	C	T	11323.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr5	145198805	rs624380	T	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	145199430	rs11293460	AG	A	2014.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	145199681	rs139755910	TTTTTG	T	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=-0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.27;ReadPosRankSum=1.863;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr5	145202461	rs6898776	C	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	145246085	rs2569006	T	G	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr5	145252574	rs10037373	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	145427527	rs1859895	T	A	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	145439647	rs2962525	T	C	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr5	145477855	rs6877277	T	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	145478009	rs6892928	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	145483679	rs12188066	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	145483713	rs12187128	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	145483844	rs12187913	A	T	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	145499996	rs10988	C	T	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	145500157	rs11167931	A	G	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	145508340	rs2895647	A	G	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	145508457	rs2895648	T	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	145508471	rs2895649	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	145508636	rs61732383	TA	CC	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=61.28;QD=44.55;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	145508644	rs150148403	C	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.35;QD=45.19;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	145508688	rs142298525	AAAAAAG	A	2014.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	145509573	rs11953517	G	A	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	145512378	rs202210415	AAG	A	434.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=0.938;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr5	145512390	rs35869904	G	C	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.97;SOR=3.467;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	145515346	rs12153109	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	145519603	rs67598659	C	T	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	145519821	rs17493851	G	A	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	145519948	rs11951553	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	145522674	rs146274608	T	TTATATA,TTATATATA	1407.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=46;set=Intersection	GT:AF:DP	1/2:0.82,0.18:34
chr5	145522912	rs2962504	A	G	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	145523105	rs11540217	G	A	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	145532859	rs17500483	T	C	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	145532876	rs17500504	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	145532927	rs17428465	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	145533128	rs34090359	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	145533418	rs34342344	T	A	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	145538924	rs13178516	T	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	145539123	rs13182567	T	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	145539996	rs11540214	T	G	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	145543972	rs3763373	G	A	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr5	145557028	.	C	CAAAA	100	.	AC=2;AF=1.00;AN=2;BRF=0.07;FR=1.0000;HP=19;HapScore=2;MGOF=53;MMLQ=24;MQ=56.39;NF=4;NR=0;PP=100;QD=25.75;SC=GACTCCGTCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=9;TCF=8;TCR=1;TR=4;WE=145557036;WS=145557018;set=Platypus	GT:AD:AF:DP	1/1:5,4:0.44:9
chr5	145557046	.	AAT	A	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=1.732;QD=6.08;ReadPosRankSum=-1.559;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr5	145557388	rs11949351	C	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	145559173	rs13157279	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	145559214	rs13171596	C	T	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	145562143	rs11540215	G	A	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	145643048	rs7729098	G	A	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	145838440	rs11743333	G	A	7465.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	145850459	rs11463725	G	GT	215.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	145851123	.	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.556;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr5	145858010	rs4705359	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	145890028	rs4705103	A	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	146434146	rs720305	C	T	5599.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	146619206	rs4705132	G	C	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	146659014	rs78417445	T	G	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	146728149	rs10072514	C	G	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	146728396	rs72831396	C	T	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	146753004	rs4235731	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	146754839	rs10515585	C	G	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	146775311	rs2288808	A	T	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	146775377	rs2288807	G	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	146777188	rs2304045	A	G	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	146777447	rs74828553	A	ATAGAAAGAG	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	146780521	rs13168262	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	146781440	rs3816013	A	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	146971253	rs7449194	C	T	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	146981164	rs111740872	TCAAAACAAAACAAAA	T	686.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=42.92;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	147261812	rs3843496	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	147276404	rs2304067	T	C	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	147281308	rs11956228	C	T	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	147286013	rs7722926	A	T	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	147444785	rs2287772	A	G	150.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	147444989	rs9325061	G	A	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	147445023	rs1609851	C	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	147445108	rs3036741	TCACACA	T	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	147445124	rs1007979	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.88;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	147449855	rs1423001	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	147450085	rs3752676	C	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	147468234	rs7711953	C	G	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	147468614	rs10038561	A	G	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.45;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	147468971	rs4529181	G	C	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	147475386	rs6892205	A	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	147475488	rs11958432	A	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	147475513	rs76839946	G	GT	1293.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.05;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	147475590	rs11948406	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	147475609	rs62388363	A	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	147475627	rs62388364	G	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	147477351	rs140268040	T	TTTTAA	1609.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	147477551	rs34482796	C	T	7672.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr5	147478785	rs1422991	C	T	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	147478981	rs11168021	C	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	147479991	rs2303061	C	T	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	147480007	rs2303062	A	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	147480027	rs2303063	G	A	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	147480112	rs2303065	T	C	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	147480868	rs2303066	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	147480955	rs2303067	A	G	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	147481018	rs2303068	G	A	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	147481430	rs6896303	A	G	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	147484465	rs34473560	GA	G	659.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr5	147486677	rs880687	C	A	7510.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	147486774	rs41291431	C	T	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr5	147486818	rs3036740	CGT	C	6923.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	147488367	rs2303071	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	147493831	.	C	CT	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.23;ReadPosRankSum=-0.253;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr5	147493833	rs35043219	C	T	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.66;ReadPosRankSum=-0.201;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr5	147493871	rs3815735	G	A	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	147497871	rs6891892	T	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	147497932	rs3777135	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	147498019	rs3777134	G	A	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	147498523	rs3764926	T	C	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	147498652	rs9325073	C	G	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	147498669	rs9325074	G	A	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	147498672	rs12518996	G	A	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	147498763	rs9325075	C	A	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	147499616	rs17704908	C	T	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	147499670	rs33920397	C	T	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	147504305	rs3036731	C	CT	1019.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr5	147504315	rs2052537	A	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr5	147504557	rs2052536	T	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	147505116	rs3764930	G	A	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	147505227	rs2112767	G	A	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	147510776	rs6895434	T	C	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	147510866	rs2400478	T	C	8344.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr5	147513650	rs41291439	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	147549163	rs4269285	T	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	147554889	rs10052031	A	C	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	147554997	rs147123556	TTTTTTCC	T	3182.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=44.20;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	147555029	rs10074328	C	T	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	147585797	.	C	CTCATT	1889.73	.	AC=2;AF=1.00;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	147585799	.	TAAC	T	2343.73	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	147585805	.	C	T	1901.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	147585806	.	AC	A	1892.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	147593497	rs12186491	C	A	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	147902972	rs2277050	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	147928130	rs13171326	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	148016537	rs17639735	A	G	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	148206375	rs1801704	C	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	148206473	rs1042714	G	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	148206646	rs1042717	G	A	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	148206917	rs1042718	C	A	9921.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr5	148207447	rs1042719	G	C	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	148207633	rs1042720	G	A	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=26.03;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	148207667	rs141761380	C	CCG	964.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	148407708	rs1432794	A	C	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	148425526	.	T	TA	2428.73	.	AC=2;AF=1.00;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	1/1:4,112:0.97:116
chr5	148521799	rs11744532	T	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	148577887	rs199548691	G	A	7317.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	148578566	rs2068262	C	T	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	148578636	rs13362048	T	C	6199.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	148580025	rs6580602	G	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	148586451	rs5872113	A	AG	387.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.31;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	148679301	rs171286	C	G	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr5	148682188	rs352341	G	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	148889672	rs2077482	A	T	336.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.05;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	148977613	rs7709875	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	148997686	rs6579750	A	G	12192.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:2,467:1.00:469
chr5	148999881	rs11409449	G	GC	2008.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	149000039	rs7733761	C	T	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	149001283	rs78820823	T	C	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	149006837	rs7732873	A	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	149006879	rs7733002	A	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	149008403	rs1056993	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	149008467	rs3733662	C	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	149008521	rs1135093	A	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	149227267	.	TA	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.777;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr5	149294595	rs3077235	CT	C	93.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-0.849;QD=4.08;ReadPosRankSum=0.637;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr5	149360877	rs30832	T	C	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	149374879	rs3832324	CT	C	8033.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	149374932	rs10875553	T	C	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	149380158	rs3812008	CG	TC	13627.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr5	149406271	rs6579767	C	T	5789.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	149406733	rs2304069	G	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	149424966	rs2276983	G	A	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	149427387	rs2043284	T	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	149428395	rs216125	C	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	149428424	rs216126	G	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	149431223	rs216131	G	A	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	149431259	rs216132	A	G	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	149433596	rs2066934	TG	GA	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	149435759	rs216136	G	A	13645.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr5	149437190	rs216138	C	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	149440644	rs170037	C	T	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	149441016	rs11286566	AC	A	1585.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	149447628	rs216150	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	149456771	rs2855781	CT	AA	26556.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr5	149457678	rs2228422	G	A	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	149460553	rs216123	A	G	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	149497107	.	G	GCA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.36;MQRankSum=0.842;QD=13.12;ReadPosRankSum=-0.431;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr5	149513072	rs2240780	A	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	149515074	rs740750	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	149516480	rs2240781	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	149583383	.	GGT	G	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.022;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:56,45:0.45:101
chr5	149584341	rs6878880	T	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	149584863	rs2342283	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.27;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	149584870	rs4423986	C	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	149584881	rs5024534	G	T	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	149584881	.	GTT	TTC	1072	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=1;MGOF=95;MMLQ=24;MQ=60.0;NF=26;NR=6;PP=1072;QD=35.1708710894;SC=CCACTTCAGGGTTCGGTACAG;SbPval=0.64;Source=Platypus;TC=34;TCF=27;TCR=7;TR=32;WE=149584891;WS=149584853;set=Platypus	GT:AD:AF:DP	1/1:2,32:0.94:34
chr5	149584883	rs5024533	T	C	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	149584969	rs11428067	A	AG	5312.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	149585025	rs4705426	A	C	7068.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	149602608	rs2241694	A	G	7739.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:2,298:0.99:300
chr5	149602824	rs2241695	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	149610967	rs139987809	AAATAAT	A,AAAT	2333.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.398;QD=33.82;ReadPosRankSum=-2.404;SOR=1.264;set=HC	GT:AD:AF:DP	1/2:4,8,57:0.12,0.83:69
chr5	149629683	rs4958452	T	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	149631413	rs2288799	A	G	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	149632955	rs7701427	C	T	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	149636073	rs10463293	T	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	149636109	rs10463294	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	149644597	rs891938	T	G	12702.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr5	149677851	rs6579784	A	G	7870.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:1,290:1.00:291
chr5	149737221	rs4565199	T	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.04;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	149749197	rs77741284	C	T	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr5	149771286	rs11742769	C	T	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	149781627	rs1056400	T	C	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	149784414	rs11749903	C	T	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	149792113	rs11739355	G	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	149792135	rs11739357	G	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	149792337	rs55796634	C	T	10670.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr5	149901373	rs10075355	G	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	149907533	rs2273235	T	G	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	149907602	rs2273234	A	G	8488.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr5	149914401	rs2545341	T	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr5	149919739	rs1290147	G	C	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	149921251	rs2304063	G	C	4623.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	149931222	rs6579792	T	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	150051958	rs194134	T	C	12438.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr5	150072693	rs33410	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	150275629	.	G	GA	3579.73	.	AC=2;AF=1.00;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	1/1:4,132:0.97:136
chr5	150311622	rs12656542	A	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	150311678	rs11167525	A	G	5900.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	150311773	rs7727919	T	C	10625.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr5	150311857	rs10719367	CT	C	3029.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr5	150323530	rs112582282	GTGGGAGAAGGTCGTGA	G	2377.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	150407456	rs8177447	T	C	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	150410135	rs3924	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	150411771	.	C	A	428.77	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	150413406	rs2233305	A	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	150415338	rs2287720	C	T	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	150480520	rs11960458	C	T	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	150483095	rs4958892	A	G	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	150489390	rs1133202	A	G	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	150496853	rs11747529	C	T	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr5	150499080	rs2303023	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	150499102	rs2303024	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	150504097	rs373180208	TGA	T	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr5	150506104	rs111270752	AACACACACAC	A	1801.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=40.95;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	150509258	rs144537590	T	TTTTGTTTG	543.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr5	150512589	rs146823252	G	GAAAAT	6631.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.07;QD=43.06;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	150516702	rs3214443	GT	G	1555.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	150516887	rs2303034	G	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	150518358	rs3213802	AG	GA	11614.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	150518435	rs3213804	T	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	150518892	rs3214444	GC	G	6718.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	150518988	rs2228458	G	A	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	150564975	rs248428	T	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	150565008	rs248427	C	T	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.01;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	150565724	rs248426	C	T	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	150565770	rs193728	G	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	150567049	rs35221501	CA	C	2793.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	150567074	rs36036156	T	TG	2497.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	150567145	rs454130	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	150578574	rs3734038	A	G	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	150848653	rs10709981	TA	T	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.907;QD=0.80;ReadPosRankSum=0.523;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:114,26:0.19:140
chr5	150886616	rs7723079	G	A	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	150886725	rs7723266	G	A	7620.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr5	150887184	rs75548276	G	GAGA	3663.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	150887200	rs41290577	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	150891663	rs6862750	T	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	150891733	rs2304028	A	G	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	150901111	rs3822699	A	G	17173.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr5	150901261	rs6650971	C	T	10061.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr5	150901300	rs3734046	G	A	10610.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr5	150901597	rs3734047	G	C	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	150901613	rs2053028	A	G	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	150901630	rs3734049	G	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	150905398	rs3734051	C	T	6432.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr5	150907819	rs11743288	T	C	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	150908813	rs2304024	G	A	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	150914184	rs1432643	A	T	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	150921805	rs6579879	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	150923405	rs6892335	A	G	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	150924869	.	G	T	2695.77	.	AC=1;AF=0.500;AN=2;DP=177;set=Intersection	GT:AD:AF:DP	0/1:58,118:0.67:176
chr5	150925144	rs3797875	A	G	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	150942919	rs6872614	A	G	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	150942969	rs2304053	G	A	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	150943085	rs2304054	G	A	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	150945483	rs3734055	C	T	12583.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr5	150945699	rs10085060	G	A	7002.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	150945862	rs3734057	A	G	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	150945931	rs3734058	C	T	9062.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr5	150946132	rs3734059	G	A	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	150946436	rs9324700	A	G	8055.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	150946773	rs1432862	G	A	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	150946966	rs1465690	G	A	6043.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	150947719	rs3734060	C	T	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	150948537	rs1469680	T	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	151049404	rs7719521	A	C	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	151052659	rs1978707	G	A	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	151180019	rs372020718	TA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.768;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr5	151180451	.	A	AT	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=6.602;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=3.76;ReadPosRankSum=1.493;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:67,30:0.31:97
chr5	151771817	rs1363422	C	T	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	152871721	rs3828595	G	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr5	153029852	rs35033669	ACTGT	A	2592.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	153029960	rs707176	T	C	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=26.18;SOR=1.274;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	153035525	rs2963944	A	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	153085668	rs140268951	T	TTTTGTTTGTTTG	1541.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.78;QD=44.05;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	153144216	rs3813470	A	G	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:3,111:0.97:114
chr5	153149798	.	G	A	7487.77	.	AC=2;AF=1.00;AN=2;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr5	153372525	rs1057772	G	A	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	153372743	rs6866471	G	A	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	153382072	rs35082504	GTCT	G	437.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	153406644	rs9324765	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	153406987	rs6889563	G	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	153413390	rs2578377	C	T	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	153414545	rs34907432	C	CA	1245.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr5	153429459	rs690592	T	C	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	153432450	rs11451300	A	AT	3077.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;MQ=60.32;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	153432733	rs2578386	T	C	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr5	153432970	rs2255493	C	T	3702.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	153570667	rs113838947	GC	G	6566.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	153674536	rs139016870	TTGTG	T	908.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	153677361	.	TGA	T	1646.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=49.90;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	153677362	.	GA	TC	508	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=26;MQ=66.58;NF=19;NR=3;PP=508;QD=25.5212670392;SC=TCTTTGTACTGAGCAAAAACT;SbPval=0.65;Source=Platypus;TC=33;TCF=28;TCR=5;TR=22;WE=153677371;WS=153677352;set=Platypus	GT:AD:AF:DP	1/1:11,22:0.67:33
chr5	153677363	.	A	ATCCCCCT,ACCCCT	1646.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=33;set=Intersection	GT:AF:DP	1/1:1.00:33
chr5	153709043	rs1004976	G	A	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	153789078	rs6580077	C	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	153795209	rs11167678	C	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	153795274	rs11321246	TA	T	1916.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	154193735	rs863649	A	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	154203121	rs17641488	C	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	154217840	.	GA	G	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.554;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr5	154247297	rs35471086	TAA	T	2165.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	154268902	rs816739	C	T	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	154271391	rs702743	A	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	154271948	rs816736	G	A	6968.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	154278888	rs816740	C	T	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	154282551	rs10515726	T	C	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	154287016	rs76813157	T	TGAAAAAAAA	1268.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	154287115	rs6580119	T	C	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	154291219	rs6580121	A	G	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	154291409	rs1974777	C	T	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	154291496	rs1974776	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	154296795	rs348735	A	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	154300940	rs348739	A	C	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	154306972	rs2258437	T	C	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	154308282	rs2644743	C	T	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	154308307	rs1035368	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	154311235	rs2644744	T	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	154311576	rs2544866	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.71;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	155756414	rs11740347	G	A	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	155771579	rs1801193	T	C	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	155771773	rs4434364	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	155820716	rs10475703	C	A	7729.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	155935512	rs71577199	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.14;ReadPosRankSum=1.335;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	155935708	rs45559835	G	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	156074654	rs141437738	TAAATTGA	T	1628.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	156349362	rs11134456	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	156375372	rs71591078	T	A	1058.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.76;ReadPosRankSum=0.762;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:3,48:0.94:51
chr5	156376703	rs6873053	A	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	156381370	rs7724832	G	A	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	156390297	rs6882076	T	C	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	156459856	rs34670839	C	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	156464212	rs4704837	T	G	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	156464242	rs2036402	T	C	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	156469452	rs372022585	CAA	C	174.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.41;ReadPosRankSum=-0.000;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr5	156469808	rs13173581	C	T	137.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	156479323	rs1553318	G	C	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	156479424	rs1553317	A	C	15488.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=45.82;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr5	156479424	.	AGT	CGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=24;MQ=60.08;NF=192;NR=118;PP=2947;QD=20;SC=AGGTAGAGACAGTTGTTGTCA;SbPval=0.52;Source=Platypus;TC=321;TCF=198;TCR=123;TR=310;WE=156479434;WS=156479414;set=Platypus	GT:AD:AF:DP	1/1:11,310:0.97:321
chr5	156479426	rs12522248	T	C	15488.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=44.51;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr5	156479509	rs1553316	A	G	12086.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr5	156479557	rs141023871	GTTGGAACAGTCGTCA	G	16657.73	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr5	156482099	rs2270925	T	C	1413.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.39;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	156482099	.	TTA	CTT	607	.	AC=2;AF=1.00;AN=2;BRF=0.07;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=23;NR=5;PP=607;QD=23.5881383879;SC=GAACAAGAGTTTATTTAAAAA;SbPval=0.63;Source=Platypus;TC=31;TCF=25;TCR=6;TR=28;WE=156482109;WS=156482089;set=Platypus	GT:AD:AF:DP	1/1:3,28:0.90:31
chr5	156482101	rs2270924	A	T	877.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.647;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=-0.944;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr5	156482459	rs1809941	G	T	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	156525691	rs200510921	A	AT	1094.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	156531561	rs2902306	C	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	156531736	rs1036199	C	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	156531865	rs1036200	A	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.32;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	156640563	rs143962660	C	CT	799.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr5	156644775	rs5872504	T	TC	4181.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	156644939	rs246747	G	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	156650052	rs2288502	C	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	156670916	rs66943334	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	156721863	rs5872508	T	TC	5237.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	156734644	.	GGT	G	56	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=26;MQ=60.28;NF=6;NR=0;PP=56;QD=10.3333333333;SC=GTCTCTACAGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=27;TCF=18;TCR=9;TR=6;WE=156734653;WS=156734634;set=Platypus	GT:AD:AF:DP	1/0:21,6:0.22:27
chr5	156741583	rs895309	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	156742186	rs6897056	G	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	156747584	rs7730231	C	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	156747614	rs6555939	G	T	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	156747632	rs2863198	C	G	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	156747669	rs1823035	A	G	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	156750834	rs34143712	G	GA	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=1.200;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,36:0.77:47
chr5	156760214	rs13181919	C	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	156760799	rs1900158	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	156761070	rs12656549	C	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	156762071	rs10077387	A	G	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	156762245	rs9313545	A	G	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	156763650	rs10036098	T	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	156763684	rs10043769	C	T	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	156763823	rs10038052	G	A	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	156763921	rs11134699	C	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	156765981	rs3734026	G	A	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	156766037	rs3734027	A	G	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	156766273	rs3734028	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	156770133	rs10037485	C	T	7729.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	156770653	rs13182147	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	156770688	rs10061992	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	156898690	rs6860507	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	156898899	rs4704869	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	156899290	rs9313607	T	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	156899869	rs4704870	T	C	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr5	156916037	rs10674185	C	CAAAAAGAA	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	156917340	rs10067096	A	C	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	156918850	rs2287749	C	T	12072.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr5	156946049	rs2042247	A	G	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	156957741	rs3822696	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	156991445	rs61753548	G	A	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	157002552	rs6556092	A	G	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	157065306	rs35793864	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	157075943	rs72284585	TAC	T	2006.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr5	157094771	rs36105993	TAC	T	1373.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=9.077;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.404;QD=16.55;ReadPosRankSum=3.527;SOR=1.534;set=HC	GT:AD:AF:DP	0/1:21,62:0.75:83
chr5	157106794	rs34600005	C	T	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	157158326	rs2270821	G	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	157158372	rs2270820	T	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	157158553	rs2270817	C	T	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	157164889	rs2270813	T	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	157164962	rs2270812	T	C	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	157170986	rs2279771	G	A	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	157178592	rs56398160	TA	T	2603.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	157236505	rs60217753	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=1.445;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr5	158140222	rs3734105	G	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	158204425	rs1368298	A	G	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	158511579	rs200028682	CA	C	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=10.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.703;SOR=2.594;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr5	158511794	.	G	GA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=3.471;QD=1.49;ReadPosRankSum=1.311;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr5	158523584	rs6556385	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	158526534	.	T	TA	792.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=6.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.454;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:18,56:0.76:74
chr5	158588633	.	G	GA	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.461;QD=2.68;ReadPosRankSum=0.759;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr5	158588749	rs17056583	G	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	158697481	rs3734104	C	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	158705370	rs12520035	A	G	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	158710419	rs1433046	C	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	158743788	rs3213119	C	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	158743846	rs11574790	G	A	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	158747564	rs919766	A	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	159462422	rs36052783	T	C	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	159478089	rs5872626	GT	G	245.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=1.480;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr5	159505208	rs4360078	C	A	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	159516404	rs4590210	C	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	159516431	rs4441910	G	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	159520661	rs56251777	T	C	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	159640652	rs6556482	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	159665523	rs10071756	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	159665527	rs10056227	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	159665534	rs10079413	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	159665599	rs2277954	G	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	159665726	rs10071871	C	T	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	159665733	rs2277953	C	T	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	159766379	rs13360090	C	A	880.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.29;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	159766380	rs61666605	A	AC	824.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	159776637	rs10053189	C	T	9768.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:2,344:0.99:346
chr5	159835658	rs2961944	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	159839317	rs1579074	T	C	112.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	159839530	rs10655370	T	TAAA,TAAAAA	733.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=38.62;ReadPosRankSum=1.769;SOR=0.495;set=HC	GT:AD:AF:DP	1/2:1,7,11:0.37,0.58:19
chr5	159839545	rs2961948	G	A	434.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.44;ReadPosRankSum=1.204;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr5	159840688	rs2961949	T	C	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	159840700	rs12522744	A	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	159842465	rs2910190	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	159851211	rs2910203	G	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	160043071	rs4921308	C	A	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	160043108	rs113179038	A	AT	1266.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	160043109	rs17052845	C	T	1275.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	160044855	rs1363199	G	A	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	160047265	rs6862674	C	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	160049355	rs2032804	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	160097429	rs3828604	T	C	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	160097453	rs1990888	A	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	160097496	rs958912	A	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	160097632	rs958911	G	A	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	160763821	.	C	CA	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.309;QD=0.82;ReadPosRankSum=-0.674;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:195,45:0.19:240
chr5	160972443	rs70990788	T	TAA	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.279;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr5	160973808	rs370064343	TA	T	325.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.617;QD=13.03;ReadPosRankSum=0.316;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr5	161113004	rs13188991	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	161114522	rs4454083	T	C	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	161114533	rs13162148	C	T	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	161116903	rs4921402	C	A	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	161119071	rs12522663	G	T	7881.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	161119125	rs13184586	C	G	8072.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr5	161128761	rs4277944	C	G	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	161322652	.	G	GT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=1.147;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:85,18:0.17:103
chr5	161322889	rs2279020	G	A	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	161529571	rs211035	A	G	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	161576418	rs211014	C	A	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	161579441	rs211013	A	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	162890953	rs380101	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	162891894	rs3756648	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	162938940	rs11307015	GT	G	1411.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	162940739	rs964945	G	A	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	162944709	rs7733775	A	G	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	162945387	rs200442777	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.056;QD=0.35;ReadPosRankSum=0.131;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:96,22:0.19:118
chr5	167182055	rs1862875	G	A	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	167303317	rs1862198	G	A	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	167489049	rs11411759	C	CT	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-0.447;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr5	167566600	rs1432822	T	A	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	167671781	rs139210116	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.931;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr5	167674370	rs3733988	C	T	7923.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	167675392	rs12189266	C	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	167689296	rs17632540	C	T	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	167881029	rs111457550	TGGA	T	2013.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=43.78;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	167913459	rs2305725	C	A	3562.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.82;ReadPosRankSum=-0.580;SOR=0.267;set=HC	GT:AD:AF:DP	1/1:1,137:0.99:138
chr5	167913510	rs244903	G	A	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	167919623	rs184957	T	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	167919726	rs2305727	A	G	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	167919825	rs2305728	G	A	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	167920725	rs9647573	G	T	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	167921047	rs2432642	C	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	167922578	rs67012869	C	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	167924123	rs17664493	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	167924174	rs72830965	T	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	167924260	rs11557637	C	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	167927541	rs17633733	A	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	167933060	rs2305733	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	167933156	rs61744940	A	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	167933156	.	ATT	GTA	2350	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=4;HapScore=1;MGOF=15;MMLQ=20;MQ=60.0;NF=32;NR=29;PP=2350;QD=39.4011127027;SC=AACAAAGACTATTTGAGGAAA;SbPval=0.53;Source=Platypus;TC=63;TCF=33;TCR=30;TR=61;WE=167933166;WS=167933146;set=Platypus	GT:AD:AF:DP	1/1:2,61:0.97:63
chr5	167933158	rs2305734	T	A	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	167933215	rs2305735	A	G	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	167943827	rs653568	G	A	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	167944743	rs11269831	A	ATTTCTGATTTACGTGAATCACTTAGTACATAT	1261.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	167945076	.	CTTT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.09;ReadPosRankSum=1.100;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr5	167946076	rs2305736	A	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	167956362	rs1870053	C	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	167956570	rs199911358	G	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	167986274	rs158894	G	C	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	167996035	.	A	AATATATAT	46.37	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.46;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	168097120	rs4868094	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	168098235	rs2277933	A	G	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	168098463	rs292486	A	G	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	168098592	rs55806129	G	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	168137885	rs2305992	G	A	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	168175205	rs11748347	C	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	168175324	rs17634681	G	T	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	168176517	rs2304035	A	G	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	168180081	rs10036727	C	T	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	168189501	rs2288796	C	T	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	168212951	rs891921	A	G	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	169020337	rs368915167	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.658;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr5	169021098	rs17644562	A	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	169021126	rs55679721	C	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	169021323	rs17644580	G	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	169021610	rs4493692	C	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	169021702	rs17558484	A	G	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	169025924	rs17644660	C	T	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	169028481	rs3797713	T	C	8656.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	169031150	rs3777084	T	C	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	169031218	rs2042248	G	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	169081315	rs12656935	A	C	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	169097474	rs2306564	G	C	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.45;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	169097940	rs2306565	G	A	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	169098265	rs12656761	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	169101599	rs2244445	C	T	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	169129422	rs2306559	A	G	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	169138909	rs2306558	G	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	169310213	rs17646221	A	C	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	169422920	rs2059110	A	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	169435880	rs10056324	C	T	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	169496051	rs6868503	T	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	169504743	rs1045168	T	C	13441.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr5	169504944	rs79354516	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	169535522	rs10063424	T	C	11962.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr5	169675693	rs80044664	AT	A	6804.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	169679354	rs1546451	C	T	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	169679947	rs6880961	C	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	169689604	rs395407	G	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	169695446	rs2292254	C	T	682.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=10.792;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=-0.665;SOR=4.887;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr5	169695611	rs366122	C	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	169697707	rs315745	G	A	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	169698028	rs315744	A	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	169702390	rs2271146	C	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	169715038	rs315721	A	G	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	170215490	rs4868028	T	C	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	170221379	rs34296291	CA	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.697;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.050;QD=3.29;ReadPosRankSum=0.690;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr5	170235849	rs72837689	G	C	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	170288922	.	A	G	55	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=2;MGOF=56;MMLQ=24;MQ=55.84;NF=2;NR=2;PP=55;QD=22.4428031368;SC=GCTGCGAAGGACGAGCGGCGC;SbPval=0.68;Source=Platypus;TC=4;TCF=2;TCR=2;TR=4;WE=170288930;WS=170288912;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	170289221	rs10475962	T	G	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	170323258	rs2287893	A	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	170336614	rs1833596	G	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr5	170341326	rs34458065	TTA	T	545.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	170343326	.	G	A	105	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=2;MGOF=56;MMLQ=24;MQ=57.28;NF=5;NR=0;PP=105;QD=27.9542425094;SC=ATTATAATGCGTTATATTCTA;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=5;WE=170343334;WS=170343316;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	170343353	.	G	A	189	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=2;HapScore=2;MGOF=39;MMLQ=28;MQ=58.55;NF=9;NR=1;PP=189;QD=22.3771212547;SC=ATTATAATGCGTTATATTCTA;SbPval=0.64;Source=Platypus;TC=10;TCF=9;TCR=1;TR=10;WE=170343361;WS=170343343;set=Platypus	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	170380523	rs930891	G	A	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	170395512	rs2879366	A	T	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	170395820	rs11134672	G	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	170395885	rs2446049	T	C	271.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	170610273	rs6555936	G	A	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	170640827	rs4867648	C	A	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	170720755	rs2914330	T	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	170813951	rs28411383	C	CT	472.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	170815125	rs2071276	G	T	530.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.188;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.23;ReadPosRankSum=-0.246;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr5	170818897	rs3830032	A	G	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=40.42;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	170818906	rs3830033	T	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=46.20;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	170818964	rs138910433	G	GGT	355.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	170818969	rs3830034	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	170819887	rs3830035	G	A	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	170827115	rs6555952	C	A	4766.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=0.632;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:2,183:0.99:185
chr5	170827118	rs6555953	A	G	7905.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.44;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	170847555	rs6555955	T	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	170876364	.	C	CGTGTGTGT	181.84	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.25;QD=45.46;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	171533629	rs2306963	A	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	171533656	rs2306962	C	T	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	171554473	rs2279514	G	A	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	171621408	rs35441810	A	AT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.358;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr5	171621430	rs6862632	A	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=41.06;SOR=2.208;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	171621440	rs6862640	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=45.36;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	171627701	rs17074425	G	A	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	171627773	rs2306959	G	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	171630194	.	C	CTT	1011.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.47;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	171630203	.	CCA	C	1362.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.94;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	171760544	rs35951290	TA	T	567.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=0.308;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr5	171760546	rs3204110	A	T	488.96	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=0.401;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,30:0.86:35
chr5	171760569	rs12033	A	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	171774363	rs17074690	T	C	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	171785892	rs2569232	A	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	171800897	rs2731717	A	G	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	171808930	rs2731722	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	171849289	rs6873315	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	171849471	rs17074773	G	A	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	171881423	rs139600850	G	A	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	172196711	rs2431663	G	T	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	172261462	rs35566639	G	A	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr5	172261489	rs35768025	C	A	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr5	172261538	rs78078909	C	A	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	172261583	rs111773832	GC	G	1076.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	172294194	rs793027	G	T	6596.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	172336616	rs2302957	C	T	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	172353424	.	G	A	4270.77	.	AC=2;AF=1.00;AN=2;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	172362144	rs369647590	C	G	11460.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr5	172381864	.	G	A	2868.77	.	AC=2;AF=1.00;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	172381973	rs80167678	A	AGGT	5757.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	172385183	rs181644830	C	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	172385213	rs186867225	G	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	172385267	.	C	CAAA	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.62;ReadPosRankSum=-0.206;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr5	172396394	rs505788	C	T	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	172421760	.	ATT	A	904.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=6.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.04;ReadPosRankSum=0.958;SOR=0.599;set=HC	GT:AD:AF:DP	1/1:8,35:0.81:43
chr5	172494981	rs582067	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	172512686	rs671387	C	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	172561292	.	TAC	T	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.23;ReadPosRankSum=-1.830;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr5	172561296	.	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.87;ReadPosRankSum=-2.209;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr5	172573704	rs192005002	G	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	172573767	rs29798	T	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	172585795	rs142359158	C	T	6763.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	172588027	rs255303	G	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	172590789	rs148974577	C	A	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	172659511	rs703752	C	A	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	172660522	rs371347562	AT	A	920.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	172660526	.	AT	A	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.59;ReadPosRankSum=-0.442;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr5	173035493	rs258860	A	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	173316729	rs359467	G	A	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	173380346	rs969518	C	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	173383194	rs1564823	C	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	174152100	rs2048152	G	A	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	174156168	rs4242182	T	C	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr5	174178774	rs7709117	G	A	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	174935916	rs2662168	A	G	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	174936038	rs35420613	A	G	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	174940299	.	TAAAAAAAAAAAA	T	629.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	174943551	rs3215174	GA	G	684.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	174948943	rs34907038	C	T	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	175394887	rs370983527	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=12.54;ReadPosRankSum=-1.579;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	175665427	rs70991519	G	GC	158.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.51;QD=26.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	175717216	rs72645798	C	T	49037.77	.	AC=2;AF=1.00;AN=2;DB;DP=1804;set=Intersection	GT:AD:AF:DP	1/1:0,1791:1.00:1791
chr5	175721896	rs72645800	A	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	175721962	rs113772037	C	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.68;QD=30.35;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	175763596	rs67874748	G	A	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	175772208	rs17622467	C	T	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr5	175774865	rs2241577	G	T	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	175786437	rs78874879	CATT	C	2201.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	175793532	rs2303666	C	T	7794.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr5	175793717	rs3815898	C	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	175811094	rs56989856	C	CGT	14097.73	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr5	175813564	rs17078187	A	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	175843461	rs33956988	CG	C	1461.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	175915835	rs2963667	C	T	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	175916083	rs10054778	T	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	175927262	rs143440054	C	CAG	2784.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:19,94:0.83:113
chr5	175933691	rs113700453	TGTGTGTGC	T	616.14	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr5	175956271	rs890835	A	C	7581.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr5	175956516	rs2241585	G	A	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	175957238	rs62402556	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	175957241	rs61430626	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	175957271	rs62402558	G	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	175992258	rs6556275	A	G	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	175992266	rs11749894	C	G	6957.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	175994173	rs11392917	C	CT	904.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.513;QD=10.28;ReadPosRankSum=0.279;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:27,61:0.69:88
chr5	175995935	rs10056130	C	T	8763.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr5	176001975	rs1078450	T	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	176002144	rs4242200	A	C	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,237:1.00:238
chr5	176002873	rs3762969	C	T	8112.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	176002926	rs3762968	C	A	9355.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	176004312	rs11749537	A	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	176004476	rs11134982	T	C	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr5	176004846	rs1565149	C	T	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	176004866	rs35146200	A	AGT	3391.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:8,99:0.93:107
chr5	176005175	rs1565150	A	C	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	176005184	rs1565151	G	A	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	176005477	rs2358747	C	T	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	176008238	rs4867840	G	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	176011264	rs752139	T	C	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	176012067	rs11745507	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	176017455	rs2291442	C	T	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	176018545	rs11134984	G	A	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	176024880	rs4868663	C	T	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	176025938	rs6556276	T	C	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	176026119	.	TCTCAAAGACCCAGGATCCTCCTTC	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=61.32;NF=21;NR=33;PP=2965;QD=20;SC=GATCCACCTTTCTCAAAGACC;SbPval=0.45;Source=Platypus;TC=63;TCF=23;TCR=40;TR=54;WE=176026154;WS=176026109;set=Platypus	GT:AD:AF:DP	1/1:9,54:0.86:63
chr5	176026121	.	TCAAAGACCCAGGA	T	5011.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.75;QD=44.35;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	176026135	.	TCCTCCTTCCTC	T	5006.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.84;QD=43.92;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	176026146	.	C	T	1785	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=61.77;NF=37;NR=35;PP=1785;QD=25.2746001743;SC=CCTCCTTCCTCGGTGACACTG;SbPval=0.58;Source=Platypus;TC=73;TCF=37;TCR=36;TR=72;WE=176026154;WS=176026109;set=Platypus	GT:AD:AF:DP	1/1:1,72:0.99:73
chr5	176053336	rs5873543	GGT	G	907.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.385;QD=28.37;ReadPosRankSum=-0.372;SOR=0.512;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr5	176056529	rs4868669	A	G	13651.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,530:1.00:530
chr5	176069831	rs901740	G	A	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.44;SOR=1.315;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	176069852	.	TC	T	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=7.291;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.780;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr5	176069866	rs112646659	C	G	1213.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=14.349;MLEAC=2;MLEAF=1.000;MQ=59.82;MQRankSum=0.000;QD=24.28;ReadPosRankSum=2.254;SOR=3.038;set=HC	GT:AD:AF:DP	1/1:2,48:0.96:50
chr5	176070004	rs13176195	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	176081591	rs13182989	C	T	14212.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr5	176081856	rs13183320	A	G	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	176081907	rs11267007	C	T	7967.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	176083175	rs6878977	T	G	2822.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.007;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=-0.624;SOR=0.565;set=HC	GT:AD:AF:DP	1/1:1,105:0.99:106
chr5	176304399	rs2304517	A	G	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	176305466	rs2304516	T	A	18413.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr5	176306676	rs2292257	G	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	176314434	rs2278493	C	T	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	176314459	rs2278492	G	A	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	176314639	rs6875296	G	A	8454.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	176315299	rs4976662	C	T	4919.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	176338113	rs200691162	GAAGAA	G	1880.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=42.74;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	176516631	rs1966265	G	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	176516953	rs434434	A	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	176517136	rs59390048	C	CGT,CGTGT	2201.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=62;set=Intersection	GT:AF:DP	1/2:0.17,0.83:58
chr5	176517170	rs387598	G	A	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	176517292	rs442856	A	G	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	176517326	rs422421	T	C	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	176517461	rs446382	T	G	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	176517797	rs376618	C	T	21504.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	1/1:2,770:1.00:772
chr5	176518784	rs452885	C	T	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	176519287	rs393923	G	A	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	176522728	rs42409	C	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	176523562	rs31777	C	A	7966.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr5	176523597	rs31776	A	G	8629.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr5	176630984	rs7721671	T	C	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	176639304	rs6556305	C	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	176700885	rs12660023	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	176721198	rs28580074	T	C	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	176729736	.	ACC	A,AC	5893.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=319;set=Intersection	GT:AF:DP	1/2:0.43,0.54:232
chr5	176731452	rs28362590	G	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	176733116	rs4631	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	176733616	rs9834	T	C	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	176737720	rs13190036	A	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	176798070	.	CGGGCCGGGGCCG	C	691.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.71;QD=40.69;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	176813404	rs3812036	C	T	8074.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr5	176814656	rs33921462	G	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	176815124	rs5030873	T	C	8293.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,313:0.99:315
chr5	176823596	.	C	G	431	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=2;MGOF=4;MMLQ=24;MQ=58.71;NF=13;NR=6;PP=431;QD=24.5142743446;SC=CGCGGAGGTCCTCTCTCCCAG;SbPval=0.57;Source=Platypus;TC=19;TCF=13;TCR=6;TR=19;WE=176823604;WS=176823595;set=Platypus	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	176830627	rs17876032	G	A	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	176831119	rs17876031	A	G	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	176831177	rs35966430	TC	T	5797.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:3,201:0.99:204
chr5	176831826	rs17876030	C	G	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	176831980	rs17876029	T	C	9518.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr5	176836532	rs1801020	A	G	8069.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr5	176860293	rs2287694	T	C	11942.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr5	176885178	rs28538572	A	G	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	176895817	rs446104	GC	AA	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	176916516	rs335462	C	T	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	176916664	rs182444777	G	A	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	176917078	rs734825	T	C	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	176918190	rs371197278	C	T	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.29;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	176930135	rs28376231	G	A	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	176930171	rs138153794	AGAG	A	11549.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	176935215	rs55761704	GC	G	981.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	176936650	rs28565502	T	C	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	176938681	rs28695578	C	T	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	176939688	rs28544348	C	T	9154.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr5	176939735	rs335436	A	G	11243.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr5	176940274	rs335437	C	T	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	176940384	rs335438	G	A	12959.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr5	176940871	rs335439	G	C	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	176950794	rs28723606	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	176950879	rs28688891	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	176951276	rs337382	A	G	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	176958530	.	T	G	70	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=12;HapScore=2;MGOF=7;MMLQ=24;MQ=59.23;NF=0;NR=8;PP=70;QD=13.0964015684;SC=TGGCTGGGGGTGGGGGGGAGG;SbPval=1.0;Source=Platypus;TC=31;TCF=6;TCR=25;TR=8;WE=176958538;WS=176958520;set=Platypus	GT:AD:AF:DP	1/0:23,8:0.26:31
chr5	176963349	rs335460	G	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	176981490	.	A	ACGCCGCGCCGC	1300.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.02;QD=46.45;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	177019262	rs57960711	C	G	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	177019688	rs4607363	G	C	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:8,179:0.96:187
chr5	177019830	rs73337753	G	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	177031954	rs28742937	A	G	9826.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	177031967	rs28698736	T	C	10870.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr5	177035964	rs729459	T	C	10411.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr5	177036043	rs6600953	A	G	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	177053334	rs5013573	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	177054649	rs10585103	AT	A	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.836;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.710;QD=10.28;ReadPosRankSum=-0.587;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:10,39:0.80:49
chr5	177054672	rs7728458	T	C	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	177058605	rs138626378	G	C	9079.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr5	177058655	rs6876792	A	G	8640.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	177075678	rs188745628	T	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	177099225	.	G	GGTGGCGGCGGCGGCGGGGGCGGCGGCA	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=49.63;MQRankSum=3.683;QD=17.71;ReadPosRankSum=0.756;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr5	177099274	.	C	A	301.77	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.96;QD=23.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	177161891	rs140979906	A	G	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.58;QD=31.10;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	177309472	rs199793923	A	G	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=46.77;MQRankSum=-5.670;QD=9.38;ReadPosRankSum=1.118;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:70,59:0.46:129
chr5	177310717	rs139876295	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.24;QD=26.90;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	177344152	rs76284623	G	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=26.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	177347955	rs372116601	TA	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177347960	.	A	T	107.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177348037	.	C	CTTTG	1042.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.57;MQRankSum=-1.652;QD=40.11;ReadPosRankSum=1.070;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr5	177348098	rs4958970	G	A	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.31;QD=42.89;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	177348106	rs4958971	A	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.31;QD=42.89;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	177348150	rs4958972	C	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.78;QD=39.90;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	177348155	rs4958973	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.33;QD=46.93;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	177422876	rs7445271	T	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	177422908	rs1135320	A	G	5854.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	177482472	rs3088218	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	177482694	rs11953084	T	C	2956.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;MQRankSum=11.413;QD=22.57;ReadPosRankSum=2.136;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:6,125:0.95:131
chr5	177483118	rs11953798	T	C	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	177483154	rs9687038	T	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	177483184	rs11953029	A	G	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	177483267	rs34145160	T	TA	89.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.23;ReadPosRankSum=-0.000;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr5	177547247	rs7719667	T	C	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	177562183	rs72536798	C	CTG	1301.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	177562251	rs10060446	G	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	177565520	.	TTG	T,TTGTGTG	311.74	.	AC=1,0;AF=0.500,0.00;AN=2;DP=29;set=Intersection	GT:AF:DP	0/1:0.75:16
chr5	177570759	rs6601218	T	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	177574901	rs7380934	C	G	14370.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr5	177612634	rs7715618	A	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	177612734	rs7720480	T	C	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	177612744	rs7715796	A	G	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	177612983	rs13169133	G	A	12944.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr5	177613123	rs10479619	T	C	12956.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr5	177613168	rs13184406	C	T	8778.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	177614387	rs6886332	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	177633116	rs3812089	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	177634401	rs7705458	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	177656900	rs75990575	C	T	11237.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr5	177658883	rs2973729	C	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	177659624	rs140358085	C	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	177665486	rs1544925	T	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	177665554	rs58562702	T	C	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	177665731	rs10061163	C	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	177668882	rs2241581	T	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	177668965	rs2241580	C	T	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	177669413	rs2241579	T	G	8157.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr5	177673153	rs35716676	AGTGCAGGGACCCAGTGAG	A	1460.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	177674995	rs11746830	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	177676986	.	GCACA	G,GCA	1167.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.54;QD=32.44;SOR=1.949;set=HC	GT:AD:AF:DP	1/2:0,8,28:0.22,0.78:36
chr5	177681946	rs35519588	C	CT	4065.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	177715291	rs890801	G	A	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	177715302	rs5873603	CA	C	3106.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	177715477	rs2913833	G	T	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	177715581	rs2913832	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	177987740	rs34594012	C	T	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	177987780	rs34884264	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.44;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	177987896	rs71611445	C	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	177989103	rs11249552	C	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	178032179	.	G	GA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.12;ReadPosRankSum=0.500;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	178139442	rs1132338	T	G	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	178140090	rs1132336	C	T	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	178153317	rs34544499	C	CT	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=1.136;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr5	178154174	rs56185007	C	T	14197.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.00;QD=44.23;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	178154174	.	CA	TG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=1;HapScore=1;MGOF=10;MMLQ=28;MQ=55.37;NF=77;NR=159;PP=2947;QD=20;SC=CCTCACAGAGCAGAGGGGGCG;SbPval=0.57;Source=Platypus;TC=241;TCF=81;TCR=160;TR=236;WE=178154198;WS=178154164;set=Platypus	GT:AD:AF:DP	1/1:5,236:0.98:241
chr5	178154175	rs56328282	A	G	14197.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.97;QD=44.65;SOR=1.215;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	178154189	rs34361107	T	TG	7417.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	178154220	rs35528027	C	T	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	178154250	rs35287913	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.23;QD=38.38;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	178154257	rs34745528	G	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.14;QD=45.87;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	178293175	rs146176056	C	CT	3208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-13.754;QD=5.77;ReadPosRankSum=7.548;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:402,154:0.28:556
chr5	178369673	rs10060764	T	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	178391902	rs12719860	A	C	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	178395850	rs11741688	G	C	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	178396742	rs4700759	G	C	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	178401552	rs4700991	C	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	178407292	rs2856351	C	T	6257.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	178409927	rs17078874	G	A	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	178410151	rs2071247	C	T	22277.77	.	AC=2;AF=1.00;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	1/1:2,810:1.00:812
chr5	178410738	rs903988	C	T	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	178411315	rs2645341	C	T	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	178411438	rs79995611	C	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	178412405	rs10716144	TA	T	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=0.476;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr5	178412592	rs6880010	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	178413816	rs2256966	T	C	10570.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr5	178413947	rs11746675	T	C	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	178414532	rs10464074	A	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	178415982	rs4701014	A	G	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	178419279	rs11283410	G	GGGCAAGGTCT	6246.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	178419288	rs2645335	C	T	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	178419396	rs11449973	A	AC	6417.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	178553185	rs2303643	G	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	178634619	rs423552	C	T	10724.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr5	178634672	rs398829	C	T	9423.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr5	178634683	rs11750821	C	T	8902.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	178768439	rs55714836	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	178770759	rs2271213	C	G	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	178770981	rs2271212	A	G	8229.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr5	178772259	.	GGCA	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.717;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:81,9:0.10:90
chr5	178949465	rs28646142	G	A	268.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.81;QD=29.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	178949499	rs28689892	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.95;QD=29.37;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	178949560	rs28413987	AG	GT	10518.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	178949781	rs28420183	A	G	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.77;QD=31.34;SOR=3.467;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	178950207	rs142217072	A	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.32;QD=25.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	178950263	rs34793499	GA	G	286.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.70;QD=23.89;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	178951351	rs145029017	A	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.52;QD=32.22;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	178951365	rs138816614	C	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.17;QD=33.04;SOR=4.758;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	178951598	rs4701188	G	A	16020.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr5	178977529	.	C	CCCCGCGCCCGCCCGCCCCCAT	276.77	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	178986978	rs7704349	C	G	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	179021761	.	CAAAAA	C,CA	1488.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;MQRankSum=0.370;QD=33.83;ReadPosRankSum=0.303;SOR=1.280;set=HC	GT:AD:AF:DP	1/2:3,19,22:0.43,0.50:44
chr5	179021982	rs28685239	G	A	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	179025550	rs4701136	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	179032755	rs6877888	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	179036268	rs60104959	A	C	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	179036433	rs17355294	G	A	10060.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr5	179036608	rs8087	T	A	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	179041785	.	GAA	G	363.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.982;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.965;QD=14.55;ReadPosRankSum=0.234;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr5	179042400	rs61408162	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	179043075	rs4515257	T	C	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr5	179043982	rs34734159	C	CAA	10690.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	179049138	rs4301193	C	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	179069309	rs6887611	G	C	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	179069551	rs12519906	G	A	10146.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr5	179071958	rs7731123	C	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=4.085;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-14.127;QD=0.42;ReadPosRankSum=2.701;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:360,56:0.13:416
chr5	179078378	rs55837909	C	T	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	179078940	rs6882398	T	C	14609.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr5	179079104	rs113370076	G	A	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	179105523	rs62406695	C	G	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	179126090	rs1134924	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	179136138	rs6601068	A	G	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	179146829	.	G	GT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.562;QD=0.97;ReadPosRankSum=-0.395;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr5	179147641	rs59666900	C	T	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	179150788	.	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.344;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr5	179200909	rs62406189	C	G	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr5	179287207	rs148609553	CGT	C	86.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,7:0.19:36
chr5	179334857	rs185073	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	179407229	rs28011	C	T	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	179498595	rs3749821	C	T	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	179498658	rs3828698	G	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	179528351	rs67139455	TG	T	1184.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	179528359	rs113499659	G	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=42.27;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	179529124	rs7725201	G	A	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	179542290	rs35607645	T	TA	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=4.412;QD=1.98;ReadPosRankSum=0.522;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:107,38:0.26:145
chr5	179548343	rs13160214	C	T	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	179563359	rs55638756	C	T	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	179563435	rs11546322	T	C	7479.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	179565071	rs4700878	G	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	179565136	rs4700715	C	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	179665201	rs56333381	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	179729519	rs1035411	A	G	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	179744009	rs2112594	T	G	10279.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr5	179744062	rs55945279	G	T	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	179746036	rs141324280	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	179763398	rs6891083	T	G	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	179765467	rs55946431	C	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	179780292	rs199818683	CCTCCGTGGG	C	1722.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	179780340	rs5873687	GT	G	1216.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	179780382	rs11452117	A	AG	335.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.52;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	179956197	.	C	CA	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.397;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr5	179994815	rs146190811	CTG	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.796;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr5	179996111	rs6877400	C	T	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	180018299	rs149953239	G	C	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	180036871	rs2242219	C	G	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	180038545	rs744283	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	180041001	rs421662	G	C	15198.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.92;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr5	180041008	rs366388	T	C	15699.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr5	180043388	rs1130378	G	A	11614.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr5	180043731	rs3765095	C	A	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	180046209	rs446003	C	T	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.46;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	180046426	rs70973949	C	CTGGCCGCTTAGCTAAGGCACAG	3035.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	180046492	rs201407038	CAG	C	4371.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	180047412	rs382266	T	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	180047863	rs423086	C	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	180048986	rs10635355	G	GCCTC	1386.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:3,36:0.92:39
chr5	180049925	rs201607334	A	AC,ACC	457.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=2.446;SOR=1.201;set=HC	GT:AD:AF:DP	1/2:3,9,12:0.38,0.50:24
chr5	180049928	rs307828	A	C	1022.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.91;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	180053307	rs402647	A	G	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr5	180056044	rs13359473	G	A	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	180056620	rs414348	G	A	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	180057504	rs12719871	G	A	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	180076403	rs114838148	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	180165983	rs2054696	G	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	180166461	rs10464105	C	G	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	180218668	rs634501	A	G	9961.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,382:0.99:384
chr5	180276402	rs168726	C	T	7236.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	180278393	rs705441	C	G	12086.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr5	180288058	rs34173672	C	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	180288239	rs2121117	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	180326571	rs2619738	T	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	180329359	rs7735361	T	C	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	180329458	rs7712020	C	G	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=26.10;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	180329536	rs7712185	C	T	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	180338300	rs2276994	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	180338368	rs2276995	A	G	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	180374484	rs3733755	C	A	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	180374534	rs3733756	G	A	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	180374898	rs7711990	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	180375375	rs10541574	GGTAA	G	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.89;QD=41.61;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	180430797	rs72494581	T	C	5206.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	180430996	rs114244788	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.43;QD=33.39;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	180431009	rs200820251	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.04;QD=32.36;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	180432416	rs7726150	C	T	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;MQ=53.79;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	180472498	rs28677846	C	T	11757.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:1,433:1.00:434
chr5	180472513	rs6894087	A	G	11763.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr5	180474814	rs13359580	CA	TG	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	180477449	rs7702426	C	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	180482768	.	C	CA	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=3.366;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.806;QD=1.27;ReadPosRankSum=0.824;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:90,23:0.20:113
chr5	180482795	rs3885614	A	T	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=28.35;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr5	180482899	rs3885615	C	T	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr5	180486224	rs7379015	T	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	180486247	rs6601166	G	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	180582604	rs2546423	A	G	6419.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	180582980	rs7380309	G	A	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	180583039	.	G	GTTCTTTCTTTCTTTCTTTCTTTCTTTCT	741.73	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	311797	.	G	GT	1802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.813;QD=7.04;ReadPosRankSum=-0.110;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:127,129:0.50:256
chr6	312029	rs150517961	TAATG	T	2696.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.511;QD=10.62;ReadPosRankSum=1.098;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:176,78:0.31:254
chr6	335175	rs2671431	A	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	335251	rs3757305	T	C	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=5.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=0.481;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:127,72:0.36:199
chr6	335251	.	TGT	CGC	1496	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=1;MGOF=15;MMLQ=24;MQ=60.0;NF=32;NR=30;PP=1496;QD=24.9914173365;SC=ACTGTGAAGTTGTCAGAGCTC;SbPval=0.33;Source=Platypus;TC=178;TCF=101;TCR=77;TR=62;WE=335261;WS=335241;set=Platypus	GT:AD:AF:DP	1/0:116,62:0.35:178
chr6	335253	rs3757306	T	C	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.980;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:129,71:0.35:200
chr6	335268	rs4959733	C	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:120,67:0.36:187
chr6	346429	rs10642379	G	GAC	3181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.667;QD=8.08;ReadPosRankSum=-0.069;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:240,154:0.39:394
chr6	348051	rs1877172	A	G	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,57:0.52:109
chr6	348080	rs2797333	A	G	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	348906	rs11242812	G	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=1.700;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:52,32:0.38:84
chr6	350829	rs1129085	G	A	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:208,151:0.42:359
chr6	350940	rs11408655	T	TA	2035.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:135,73:0.35:208
chr6	367243	rs7776416	T	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.587;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:218,39:0.15:257
chr6	367352	rs7764099	C	T	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.592;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:547,118:0.18:665
chr6	367552	rs12527701	C	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.960;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-1.095;QD=2.36;ReadPosRankSum=-0.905;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:156,37:0.19:193
chr6	367579	rs201390269	GCAGA	G	1865.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr6	401921	rs190687454	A	C	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr6	406552	rs56116020	C	CA	538.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.42;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	407629	rs71684525	CT	C	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=5.847;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.217;QD=5.16;ReadPosRankSum=0.804;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:24,29:0.55:53
chr6	532709	rs76954521	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr6	549364	rs2473490	G	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	549390	rs2476847	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	554045	rs11399543	C	CT	518.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-0.305;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:3,30:0.91:33
chr6	556147	rs2476844	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	576902	rs708038	T	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	597871	rs4960092	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	599042	rs2294664	T	A	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	601244	rs1766844	A	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	656143	rs1211554	C	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:107,60:0.36:167
chr6	656343	rs17136239	T	C	5948.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:142,272:0.66:414
chr6	656810	rs61748571	A	G	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:80,148:0.65:228
chr6	1053665	rs4960488	T	C	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr6	1053816	rs12194400	C	T	9605.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:317,446:0.58:763
chr6	1313078	rs78460560	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr6	1313117	rs9502889	A	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	1313121	rs9502890	A	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	1313470	rs4435985	C	T	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:407,189:0.32:596
chr6	1313952	rs992327	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr6	1313980	rs147255181	C	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr6	1390276	.	CCCG	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.784;QD=1.71;ReadPosRankSum=-0.951;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:84,12:0.12:96
chr6	1391085	rs147426137	G	GGGC	4863.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.200;QD=42.66;ReadPosRankSum=-1.140;SOR=0.374;set=HC	GT:AD:AF:DP	1/1:1,113:0.99:114
chr6	1395043	rs2293783	T	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:182,92:0.34:274
chr6	1612017	.	ACGG	A	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=4.350;QD=0.85;ReadPosRankSum=-1.491;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:140,15:0.10:155
chr6	1624512	rs11759759	T	C	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:108,162:0.60:270
chr6	1960335	rs1323632	C	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr6	2624053	rs17135340	T	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:77,39:0.34:116
chr6	2675271	rs9328114	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=1.730;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:56,32:0.36:88
chr6	2683439	rs898772	T	A	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	2685677	rs966232	T	C	1962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.262;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:58,125:0.68:183
chr6	2685904	rs10498657	T	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr6	2692876	rs60637072	AGG	A,AG	517.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=30.45;SOR=5.784;set=HC	GT:AD:AF:DP	1/2:0,8,9:0.47,0.53:17
chr6	2749631	rs78647583	T	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr6	2749661	rs2296355	A	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr6	2766132	rs17851691	C	T	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.37;ReadPosRankSum=0.991;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:16,45:0.74:61
chr6	2766144	rs17851692	T	C	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.22;ReadPosRankSum=1.464;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:17,51:0.75:68
chr6	2766465	rs8333	T	C	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:46,121:0.72:167
chr6	2768816	rs12527929	G	T	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr6	2768899	rs62390266	A	C	4687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=0.171;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:75,122:0.62:197
chr6	2768905	rs3734500	A	G	4761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.78;ReadPosRankSum=0.272;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:83,126:0.60:209
chr6	2834265	rs386915	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:44,114:0.72:158
chr6	2834371	rs3215397	CA	C	312.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr6	2836266	rs385955	T	A	5606.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:110,234:0.68:344
chr6	2838046	rs316339	A	G	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:29,100:0.78:129
chr6	2838102	rs316340	G	A	3974.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:54,174:0.76:228
chr6	2838248	rs316341	G	A	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr6	2854367	rs412303	G	A	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:71,153:0.68:224
chr6	2948965	rs318426	C	T	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=1.046;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:184,69:0.27:253
chr6	2953445	rs3818276	A	G	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:93,45:0.33:138
chr6	2953496	rs12209811	C	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr6	3006821	.	CT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.762;QD=0.50;ReadPosRankSum=0.318;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:76,17:0.18:93
chr6	3010390	rs1143684	C	T	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	3010459	rs2475208	C	T	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	3012725	rs11351160	TG	T	4033.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	3015790	rs1049115	A	G	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	3019654	rs4149370	T	C	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	3076930	rs59682284	A	AT	243.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	3076931	rs34178276	A	ACAT	243.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	3077141	rs2272990	T	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	3085477	rs909966	A	C	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-0.434;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:50,28:0.36:78
chr6	3118947	rs2231355	A	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	3138194	rs1534998	T	C	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	3152822	rs2231371	C	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:152,91:0.37:243
chr6	3156530	rs3734489	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:61,26:0.30:87
chr6	3157755	.	G	T	452.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr6	3157798	rs909964	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	3157809	rs909965	C	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	3157854	rs9501929	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.16;ReadPosRankSum=0.473;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	3255163	rs11242830	C	T	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	3255327	rs9503497	G	A	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	3255340	rs9503498	A	C	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	3259463	rs9501962	G	T	1202.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.740;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.87;ReadPosRankSum=-1.361;SOR=0.108;set=HC	GT:AD:AF:DP	1/1:3,52:0.95:55
chr6	3263830	rs12193912	C	T	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	3264101	rs4959785	A	G	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	3264487	rs4959786	T	C	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	3264502	rs4959787	G	C	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	3264526	rs4959788	CT	TC	8094.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	3264582	rs11757564	G	A	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	3285286	rs10793841	A	G	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	3287118	rs6910086	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=3.580;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	3298568	rs72839355	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr6	3323570	.	C	A	1486.77	.	AC=1;AF=0.500;AN=2;DP=267;set=Intersection	GT:AD:AF:DP	0/1:179,87:0.33:266
chr6	3410247	rs2277076	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr6	3438650	rs13208786	G	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	3438738	rs12197689	G	A	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	3439510	rs9503595	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	3439637	rs9502003	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.07;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	3439646	rs13213989	C	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	3439697	rs17136561	T	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	3723764	rs1045778	G	T	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	3727811	rs226959	C	G	7890.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr6	3738322	.	A	T	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=8.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-2.452;SOR=1.311;set=HC	GT:AD:AF:DP	0/1:173,52:0.23:225
chr6	3738897	rs11390464	A	AG	657.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	3850338	rs117488732	G	A	1704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.198;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:250,96:0.28:346
chr6	4020336	rs9392546	C	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	4020356	rs9405217	G	A	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	4020540	rs78628853	AT	A	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=0.489;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:52,56:0.52:108
chr6	4021554	rs11752006	A	G	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	4031998	rs9503893	A	G	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	4033065	rs6924389	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	4037458	rs7744603	A	G	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	4037582	rs7763233	C	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	4040922	rs9392551	A	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	4052167	rs3747761	C	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	4052383	rs3747762	G	A	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	4052458	rs3833454	G	GT	1753.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	4057233	rs853407	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	4057429	rs853408	A	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	4057542	rs9503907	T	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr6	4058782	rs12198921	C	T	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr6	4069166	rs595413	C	T	12362.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr6	4119553	rs57858259	AT	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.995;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr6	4773289	rs6927577	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr6	4773330	rs6908435	A	T	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.708;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:164,59:0.26:223
chr6	4936074	rs1539004	T	G	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	4937662	rs9502253	A	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	4937728	rs36001374	C	CA	1152.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-1.964;QD=13.72;ReadPosRankSum=1.740;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:14,70:0.83:84
chr6	4937742	rs61406305	C	CT	4962.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	4937747	rs56133250	A	G	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	4944004	rs200106765	T	TA	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.820;QD=8.70;ReadPosRankSum=-0.264;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr6	4952413	rs2793263	T	C	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	4999193	rs396839	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	5000721	rs2764108	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.88;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	5000724	rs10631918	C	CTT	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=0.382;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr6	5001577	rs912711	G	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	5003952	rs4960056	T	C	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	5086070	rs667752	A	G	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	5086211	rs584962	G	C	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	5086558	rs436556	C	A	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:227,94:0.29:321
chr6	5109592	rs9606	T	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.617;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr6	5139012	rs463054	C	A	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	5148707	rs9504352	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.501;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-3.392;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr6	5148711	rs9504353	G	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-2.472;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:27,3:0.10:30
chr6	5217010	rs41302851	C	T	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:55,134:0.71:189
chr6	5260812	rs7752203	C	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr6	5260816	rs4141761	A	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr6	5260936	rs2224391	A	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-0.031;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:78,33:0.30:111
chr6	5545654	rs7749599	C	T	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	5999464	rs3749860	C	G	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	6003513	rs3792947	A	C	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	6145692	rs1050783	C	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:20,51:0.72:71
chr6	6145726	rs1050782	A	G	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:29,90:0.76:119
chr6	6151952	rs3024458	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr6	6152007	rs5980	C	T	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr6	6152137	rs5988	C	G	4099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=0.060;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:97,187:0.66:284
chr6	6152211	rs2274394	C	G	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:67,110:0.62:177
chr6	6167558	.	ATTTT	A,AT	1163.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.327;QD=22.82;ReadPosRankSum=1.010;SOR=1.127;set=HC	GT:AD:AF:DP	1/2:2,29,20:0.57,0.39:51
chr6	6167621	rs435048	G	A	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	6174786	rs380058	G	C	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	6222382	rs5981	T	G	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:97,140:0.59:237
chr6	6250967	rs3024370	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:67,25:0.27:92
chr6	6318795	rs5985	C	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr6	6318921	rs11414870	G	GA,GAA	1245.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.696;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.57;MQRankSum=1.237;QD=13.25;ReadPosRankSum=-2.509;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:18,47,29:0.50,0.31:94
chr6	6320808	rs2815822	T	G	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr6	6321128	rs1024231	T	C	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	6588881	rs977785	A	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	6589192	rs112924538	G	GGA	2005.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	6625418	rs2233124	T	C	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	7187773	rs3028658	C	CTTTTA	4952.73	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr6	7230680	rs9502564	G	T	10666.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:193,449:0.70:642
chr6	7329873	rs2764095	T	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	7390369	rs2296358	T	C	7225.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr6	7393452	rs2274212	C	T	3247.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:11,138:0.93:149
chr6	7395497	rs6899625	G	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	7396836	rs12212766	G	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	7396887	rs12212772	G	A	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	7397125	rs150425917	G	GGTGTGT,GGT	1186.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/1:0.85:34
chr6	7398832	rs2296359	A	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	7401382	rs147185967	AAAAC	A	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	7410735	.	G	GT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=0.545;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:174,36:0.17:210
chr6	7414382	rs2245533	T	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	7414657	rs4960314	T	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	7556063	rs56148603	C	T	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:304,130:0.30:434
chr6	7558318	rs10484326	T	C	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:79,180:0.69:259
chr6	7563983	rs2806234	T	G	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	7564139	rs1358903	C	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=5.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-2.792;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:96,32:0.25:128
chr6	7564231	.	A	G	360.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr6	7565490	rs35266991	A	AT	591.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr6	7567970	rs2076296	C	T	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	7571874	rs926411	G	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	7572026	rs2076303	T	A	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.110;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:199,81:0.29:280
chr6	7572262	rs2076304	A	G	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	7574805	rs2259208	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.109;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr6	7574852	rs2295859	T	C	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:31,112:0.78:143
chr6	7576527	rs1016835	G	A	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=1.120;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	7577079	rs2260359	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.23;ReadPosRankSum=-0.980;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr6	7577354	rs2064218	C	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:36,9:0.20:45
chr6	7578189	rs6942260	G	A	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:50,100:0.67:150
chr6	7578819	rs2806229	T	G	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=1.466;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	7578823	rs2842691	G	A	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=1.544;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	7579363	rs2806227	A	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	7579393	rs2744379	CA	TG	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	7579412	rs2806225	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	7584617	rs2076300	C	T	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:157,82:0.34:239
chr6	7585967	rs2744380	G	C	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	7585979	.	CTCCCGCTCGGGA	C	1463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=4.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.507;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:147,49:0.25:196
chr6	7590624	rs2757594	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr6	7590653	rs2744384	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr6	7595241	.	AT	A	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.543;QD=2.09;ReadPosRankSum=-0.861;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr6	7606255	rs2757597	G	A	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.060;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:179,72:0.29:251
chr6	7608863	rs1535433	T	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr6	7727413	rs201788022	G	A	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:58,136:0.70:194
chr6	7986654	rs197128	A	G	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr6	7987883	rs6597293	G	C	5053.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:71,210:0.75:281
chr6	8015821	rs3734591	T	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.264;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr6	8016089	rs2057185	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:79,32:0.29:111
chr6	8026577	rs9328452	T	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.215;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:118,29:0.20:147
chr6	8054413	rs2743993	T	C	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:149,96:0.39:245
chr6	8095629	rs9392961	G	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr6	8102490	rs9392962	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr6	8417521	rs6905235	G	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr6	8435454	rs6597317	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr6	9616231	rs143324041	A	AGAAGAAGAAGAG	5400.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.26;QD=41.87;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:1,128:0.99:129
chr6	9705636	rs12215551	T	C	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.165;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:253,69:0.21:322
chr6	9707874	rs143425289	AAAT	A	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr6	9707900	rs12216536	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr6	9750430	rs10949284	T	C	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr6	9750730	rs71546885	G	GTAATAATAA	453.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=45.37;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr6	9776194	rs9370818	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr6	9795549	rs70988144	G	GAGA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-0.000;QD=17.17;ReadPosRankSum=2.020;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	9845732	rs11968445	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,62:0.63:98
chr6	9860514	rs150538680	C	CA	279.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.000;QD=14.72;ReadPosRankSum=1.804;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr6	9903626	rs56839110	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.768;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr6	9922006	rs1925775	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	9933267	.	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,54:0.69:78
chr6	10410389	.	G	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=0.455;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:56,29:0.34:85
chr6	10529119	rs79945859	A	C	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr6	10557726	rs34815041	CT	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=0.824;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr6	10587038	rs539351	C	G	10130.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr6	10587056	rs71548508	A	G	1454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.647;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:252,90:0.26:342
chr6	10626945	rs113642669	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr6	10634960	rs34276843	AT	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.037;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr6	10647272	rs9885719	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:98,49:0.33:147
chr6	10687746	rs7749306	G	T	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=9.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.391;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:284,92:0.24:376
chr6	10695136	.	GT	G	67.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=8.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=-0.441;SOR=3.030;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	10764727	rs126405	A	G	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chr6	10775446	rs478791	T	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	10785011	rs113945134	C	CCAGA	12330.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr6	10785263	rs6936890	C	G	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	10791859	rs518954	A	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	10792197	rs521802	T	C	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	10802045	rs569418	C	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	10802101	rs4712966	G	A	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,86:0.73:118
chr6	10814091	rs6909367	A	G	4365.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:79,187:0.70:266
chr6	10875238	rs2076257	T	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:61,23:0.27:84
chr6	10876036	rs2076258	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=1.010;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:56,26:0.32:82
chr6	10882100	rs2153156	G	A	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	10887251	rs9366663	T	C	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.94;SOR=1.956;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	10887251	.	TCG	CCC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=18;MQ=59.75;NF=57;NR=22;PP=2947;QD=20;SC=CAGGGCTCTTTCGGCAGCGCC;SbPval=0.6;Source=Platypus;TC=86;TCF=61;TCR=25;TR=79;WE=10887261;WS=10887241;set=Platypus	GT:AD:AF:DP	1/1:7,79:0.92:86
chr6	10887253	rs9358956	G	C	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	10887276	rs9348724	C	G	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	10891651	rs138214707	ATT	A	203.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	10891781	rs1538441	C	T	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	10891842	.	CTCTCTGTGTGTG	C,CTGTGTG	1190.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=30;set=Intersection	GT:AF:DP	1/2:0.60,0.40:15
chr6	10898820	rs12190074	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr6	10906154	rs9357021	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr6	10911282	rs4713044	G	A	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	10924992	rs1225764	A	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	10931587	rs1225729	T	C	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	10955408	rs1225746	C	T	7224.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	10955594	rs1225747	T	C	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	10961454	rs2295599	C	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr6	10961649	rs9791208	T	C	8736.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:131,367:0.74:498
chr6	10964194	rs200660369	A	AT	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.964;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.190;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr6	10983971	rs4532436	C	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.837;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:92,31:0.25:123
chr6	10989873	.	C	CAA	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-0.023;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr6	10990751	rs911196	T	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr6	11005842	rs2295602	T	C	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.668;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:78,23:0.23:101
chr6	11010800	rs9295752	T	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.447;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-1.031;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr6	11011074	rs9380025	T	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.288;SOR=0.198;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr6	11185257	rs10601	A	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr6	11185967	rs6456968	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr6	11190626	rs941982	A	G	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=1.686;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:160,37:0.19:197
chr6	11192522	rs5874310	C	CT	923.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:77,33:0.30:110
chr6	11192575	rs1465131	C	T	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=3.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=2.048;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:193,68:0.26:261
chr6	11192829	rs112090949	C	CTT	259.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr6	11193730	rs16871072	A	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.899;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr6	11200421	rs2078599	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:69,37:0.35:106
chr6	11201437	rs9368610	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.763;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:103,26:0.20:129
chr6	11306153	rs16871236	C	T	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr6	11538534	rs821443	C	T	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-1.027;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:124,45:0.27:169
chr6	11714639	rs35108078	G	GA	1535.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.899;QD=11.81;ReadPosRankSum=-0.107;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:29,101:0.78:130
chr6	11714806	rs3734273	G	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:208,88:0.30:296
chr6	11723538	rs210905	A	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.03;SOR=1.467;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	11723538	.	AC	GC,GT	527	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=36,26;NR=16,11;PP=189,527;QD=4.30329254898;SC=GGAGAGGCAGACACGGAAGAA;SbPval=0.55;Source=Platypus;TC=55;TCF=38;TCR=17;TR=52,37;WE=11723547;WS=11723528;set=Platypus	GT:AF:DP	0/1:0.95:55
chr6	11723539	rs77836444	C	T	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-0.666;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:17,46:0.73:63
chr6	11770334	rs148298172	TA	T	2080.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:39,105:0.73:144
chr6	11770425	rs45538938	C	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr6	12120090	rs3800499	C	T	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:42,62:0.60:104
chr6	12120445	rs2228215	A	G	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:292,124:0.30:416
chr6	12120588	rs2228209	C	T	4414.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:464,243:0.34:707
chr6	12122174	rs2228210	A	G	1642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=2.310;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:258,103:0.29:361
chr6	12122645	rs6900196	A	G	11264.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr6	12122773	rs2228211	T	C	5054.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:94,230:0.71:324
chr6	12124855	rs2228213	G	A	3589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=785;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.891;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:567,215:0.27:782
chr6	12290728	rs1800997	TA	T	1030.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	12292772	rs2070699	G	T	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	12294258	rs5369	A	G	6956.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	13182685	rs3778646	G	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,22:0.29:75
chr6	13273318	rs202054	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr6	13281412	rs3846903	A	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:170,77:0.31:247
chr6	13288535	rs202040	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr6	13288578	rs202039	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:80,26:0.25:106
chr6	13288648	rs202038	A	G	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.756;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=2.077;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:146,35:0.19:181
chr6	13288679	rs67298859	GCT	G	951.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.882;QD=6.06;ReadPosRankSum=-0.369;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:122,35:0.22:157
chr6	13288737	rs202036	T	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.121;QD=1.96;ReadPosRankSum=0.697;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:79,18:0.19:97
chr6	13294866	rs6910418	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.258;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-1.220;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr6	13295502	rs4602719	T	C	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:113,59:0.34:172
chr6	13295515	rs1550526	A	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:106,55:0.34:161
chr6	13295536	rs454563	C	T	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.308;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:114,62:0.35:176
chr6	13295752	rs35194435	AG	A	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.025;QD=2.67;ReadPosRankSum=-1.901;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr6	13308083	rs2439538	T	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr6	13316658	rs860266	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr6	13316780	rs56980190	CA	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.882;QD=1.00;ReadPosRankSum=0.218;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:177,57:0.24:234
chr6	13325279	rs2439553	C	T	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:44,120:0.73:164
chr6	13361088	rs2496162	A	G	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:26,115:0.82:141
chr6	13365913	rs9367440	C	G	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:38,134:0.78:172
chr6	13470113	rs766773	A	T	12482.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:1,429:1.00:430
chr6	13584583	rs2804918	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.527;QD=2.60;ReadPosRankSum=1.774;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:90,27:0.23:117
chr6	13620877	rs3757260	A	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	13638243	rs2071836	T	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	13639700	rs6915775	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	13659079	rs204232	T	G	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr6	13711279	rs6905991	A	G	6827.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	14131804	rs7743206	G	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:184,71:0.28:255
chr6	15374508	rs9383050	A	G	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	15374544	rs2072820	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr6	15468722	rs147212247	AGGGTGAG	A	866.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr6	15497130	rs376937633	C	T	6933.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:144,295:0.67:439
chr6	15497422	rs9349979	A	G	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:48,105:0.69:153
chr6	15504589	rs760659	T	C	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,57:0.64:89
chr6	15511429	rs55742636	C	CCCAT	1747.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr6	15513482	rs2235258	G	A	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:18,68:0.79:86
chr6	15513744	rs9396589	G	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr6	15533951	rs4236167	C	T	10482.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr6	15546294	rs34253215	C	CT	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.873;QD=6.40;ReadPosRankSum=1.219;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chr6	15586009	rs6926401	G	T	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	15593240	rs7758659	T	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	15593319	.	GA	G	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.766;QD=0.55;ReadPosRankSum=0.645;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr6	15662891	rs9476887	G	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:53,19:0.26:72
chr6	16145325	rs9370867	A	G	1379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.851;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=4.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=2.581;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:240,82:0.25:322
chr6	16147098	.	TAA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.872;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr6	16290761	rs1042391	T	A	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.210;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.984;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:232,83:0.26:315
chr6	16290862	rs6926552	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:78,34:0.30:112
chr6	16327330	rs2075974	T	C	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=6.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-1.433;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:226,78:0.26:304
chr6	16327615	rs179990	A	G	13740.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr6	16327864	.	GTGC	G	1075	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=21;MQ=58.42;NF=11;NR=50;PP=1075;QD=17.6885245902;SC=CCCTGCTGAGGTGCTGCTGCT;SbPval=0.26;Source=Platypus;TC=164;TCF=23;TCR=141;TR=61;WE=16327874;WS=16327854;set=Platypus	GT:AD:AF:DP	1/0:103,61:0.37:164
chr6	16327909	.	ATGCTGATGC	A,CTGCTGATGC	2948.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=227;set=Intersection	GT:AF:DP	1/2:0.30,0.54:142
chr6	16327915	.	ATGC	A	2958.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=219;set=Intersection	GT:AD:AF:DP	0/1:51,94:0.65:145
chr6	16328068	rs2072736	T	C	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr6	17102596	rs1473744	A	G	2106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=5.143;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:55,93:0.63:148
chr6	17102600	rs2147230	A	G	3943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.58;ReadPosRankSum=1.058;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:36,102:0.74:138
chr6	17115384	rs34224564	G	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr6	17282415	rs1108512	G	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	17292448	.	T	TAAA	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.917;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:72,24:0.25:96
chr6	17536587	rs114130778	T	C	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=1.043;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:94,46:0.33:140
chr6	17541477	rs76909997	A	T	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-0.275;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:95,32:0.25:127
chr6	17541484	rs4716155	G	T	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.949;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.339;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr6	17543036	rs2296249	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	17543187	rs28360582	A	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr6	17543302	rs9256	A	G	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:157,99:0.39:256
chr6	17600619	rs6919110	A	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr6	17601137	.	C	T	3941.77	.	AC=1;AF=0.500;AN=2;DP=218;set=Intersection	GT:AD:AF:DP	0/1:62,155:0.71:217
chr6	17605106	rs6916441	A	C	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr6	17606413	rs1969830	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	17606428	.	AT	A	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.22;ReadPosRankSum=-4.101;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	17616256	rs3777711	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:66,26:0.28:92
chr6	17616493	rs7765156	C	G	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.63;SOR=1.882;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	17616556	rs3777712	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr6	17617012	rs75715398	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-1.272;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr6	17628841	rs11422297	T	TA,TAA	719.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.443;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=-1.857;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:3,17,16:0.47,0.44:36
chr6	17629616	rs942467	G	A	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:50,136:0.73:186
chr6	17633061	rs2274136	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	17665479	rs6906499	G	C	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	17675246	rs2228375	T	C	5534.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:111,238:0.68:349
chr6	17675386	rs11418400	G	GA	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.875;QD=1.85;ReadPosRankSum=-0.351;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:118,42:0.26:160
chr6	17764530	rs9371018	C	T	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:63,131:0.68:194
chr6	17764731	rs6459569	G	C	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.911;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:234,71:0.23:305
chr6	17771246	rs9477522	A	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr6	17779475	.	TATATATATATATA	T	75.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.815;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=-0.658;QD=3.99;ReadPosRankSum=0.798;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr6	17779478	.	ATATATATATATTTTTTTTTTTTTTTTTTT	A	443.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=1.071;QD=23.35;ReadPosRankSum=-1.307;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr6	17779731	rs9477524	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	17779973	rs9477525	A	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	17785948	rs4716186	A	G	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	17794494	rs3734234	G	A	5180.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	17799766	rs6459573	T	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	17800131	rs41267716	G	T	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:76,193:0.72:269
chr6	17809199	rs6913612	G	A	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	17815716	rs6920106	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	17817235	rs9383327	C	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	17855864	rs624105	G	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	17873560	rs41267728	A	C	3487.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:60,158:0.72:218
chr6	17882140	rs7757737	A	T	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	18122506	rs10949483	G	A	8031.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	18130993	rs56161402	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.801;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr6	18134008	rs113956700	G	GA	887.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=-0.842;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:13,58:0.82:71
chr6	18134021	rs2842949	C	A	2132.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.175;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.62;ReadPosRankSum=-0.517;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:4,68:0.94:72
chr6	18139214	rs2842934	G	A	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	18139964	rs375276814	GA	G	180.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	18148019	rs4449636	G	A	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	18148247	rs12529220	T	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr6	18149526	rs3930696	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr6	18161563	rs4716224	G	A	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=1.889;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:175,59:0.25:234
chr6	18161817	rs12664350	C	T	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:36,92:0.72:128
chr6	18163218	rs75526110	T	C	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.161;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:97,44:0.31:141
chr6	18166802	rs912528	T	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	18171477	rs1011620	G	A	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	18187916	rs372534	C	T	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	18188091	rs429158	T	C	9153.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:145,414:0.74:559
chr6	18201961	rs214612	T	C	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	18207876	rs214598	G	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr6	18208319	rs214596	G	A	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:41,89:0.68:130
chr6	18208415	rs72840622	G	A	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:63,120:0.66:183
chr6	18215303	rs214585	T	C	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	18258085	rs7743778	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr6	18368880	rs11757266	G	A	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr6	18368917	rs375677471	C	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:93,32:0.26:125
chr6	18387692	rs9396858	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr6	18399750	rs2296198	T	C	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:58,178:0.75:236
chr6	18406387	rs6925570	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:33,76:0.70:109
chr6	18427753	rs17627311	T	C	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.811;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:123,46:0.27:169
chr6	18439739	rs2277081	T	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr6	18463633	rs9371061	C	T	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:165,83:0.33:248
chr6	19837966	rs1047316	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	19837969	rs12662234	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	20109696	rs2457334	A	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:76,37:0.33:113
chr6	20110043	rs77627773	C	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr6	20124860	rs949550	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr6	20126610	rs34292360	T	C	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,53:0.62:86
chr6	20126656	rs2483766	C	T	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:60,110:0.65:170
chr6	20131499	rs34263705	C	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr6	20144637	rs1202195	G	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	20546527	rs9465799	G	A	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.898;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.430;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr6	20548795	.	C	CT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=0.089;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:90,19:0.17:109
chr6	20739731	rs41272361	C	T	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:57,132:0.70:189
chr6	20739958	rs62399286	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr6	20758704	rs2820000	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr6	20758808	.	G	GT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=1.005;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr6	20758943	rs2820001	G	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.006;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr6	20781290	rs12199265	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr6	21065450	rs56087852	A	G	5774.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:113,259:0.70:372
chr6	21198399	rs75342227	C	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:70,38:0.35:108
chr6	21201493	rs9465994	G	A	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	21231007	rs9460612	G	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	21231034	rs12200511	C	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	21595712	rs201864836	C	T	2569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-0.965;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:54,120:0.69:174
chr6	22136764	rs79555544	G	A	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:241,116:0.32:357
chr6	22136863	rs186644563	A	G	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:313,135:0.30:448
chr6	22146798	.	C	CTTTT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.96;ReadPosRankSum=-0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	22146818	rs5874858	AT	A	371.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.59;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	22292976	rs1205955	A	T	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr6	24174955	rs9358755	G	C	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	24175124	rs3789219	T	C	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:45,84:0.65:129
chr6	24302087	rs807703	G	A	7325.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:103,299:0.74:402
chr6	24353742	rs813227	A	G	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:46,74:0.62:120
chr6	24418348	rs2793422	G	A	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:27,78:0.74:105
chr6	24418581	rs2753925	A	T	1462.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	24437445	rs1772256	G	A	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	24437458	rs1042303	T	C	4379.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:61,198:0.76:259
chr6	24445718	rs793714	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	24448061	rs796985	A	C	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	24450168	rs5874981	G	GCCT	1456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.588;QD=7.04;ReadPosRankSum=-0.087;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:159,48:0.23:207
chr6	24460668	rs143820818	AAAC	A	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr6	24460679	rs2793434	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr6	24460707	rs2744576	A	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr6	24463055	rs2793442	A	G	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	24467060	rs35276216	GA	G	1125.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:103,46:0.31:149
chr6	24467633	rs2793445	C	T	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	24474018	rs35864956	G	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:20,59:0.75:79
chr6	24475174	rs201558310	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.316;QD=1.67;ReadPosRankSum=-1.544;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr6	24475517	rs66707391	TATTA	T	4656.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:57,118:0.67:175
chr6	24476553	rs760904	G	A	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	24480025	rs5874986	CAT	C	294.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;MQ=60.26;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr6	24489565	rs150469731	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:159,69:0.30:228
chr6	24489652	rs1126617	C	T	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:231,99:0.30:330
chr6	24489741	rs2076316	A	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:110,51:0.32:161
chr6	24503590	rs2760118	C	T	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.034;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:226,89:0.28:315
chr6	24505030	rs2744583	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:127,57:0.31:184
chr6	24505221	rs2817220	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:152,72:0.32:224
chr6	24505354	rs2744584	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr6	24511960	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.376;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr6	24556675	rs807538	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	24559433	rs3903801	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr6	24564589	rs9467233	C	T	1710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.090;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:329,115:0.26:444
chr6	24576631	rs2744559	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.429;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-1.160;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:129,31:0.19:160
chr6	24578272	rs2760157	G	A	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:142,70:0.33:212
chr6	24580213	rs2744564	C	G	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.385;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:144,58:0.29:202
chr6	24588884	rs4504469	C	T	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:14,67:0.83:81
chr6	24596478	rs4576240	T	G	17026.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr6	24651352	rs67414927	TA	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.227;QD=3.49;ReadPosRankSum=-0.244;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr6	24653273	rs2294689	G	C	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=3.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.873;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:268,110:0.29:378
chr6	24653376	rs1129644	G	A	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:146,62:0.30:208
chr6	24666194	rs3756815	G	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr6	24667205	rs17243164	T	TCC	2540.73	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:143,74:0.34:217
chr6	24687765	rs926529	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:94,43:0.31:137
chr6	24687933	rs36025667	A	AT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.145;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr6	24777547	rs111973967	A	AT	48.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr6	24799121	.	CT	C	2006.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=4.951;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.807;QD=7.75;ReadPosRankSum=0.147;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:187,72:0.28:259
chr6	24806594	rs9358799	C	T	8785.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr6	24806739	rs5875006	C	CTT	7873.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	24806752	rs4074420	A	C	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr6	24806777	rs9379689	T	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	24809771	rs9379692	A	G	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	24809853	rs9393587	C	T	6447.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	24809881	rs9358801	T	A	9505.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	24825511	rs9358804	A	G	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	24828318	rs35374726	C	T	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	24828560	rs45437991	A	G	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	24828566	rs72205632	CCATT	C	4424.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	24836161	rs6901565	C	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	24839746	rs72839911	G	A	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:52,86:0.62:138
chr6	25042286	rs35331447	TA	T	431.84	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr6	25082262	rs12197057	T	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr6	25084691	rs303007	C	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	25084718	rs303006	A	G	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	25084840	rs6917740	A	G	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=3.292;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:128,65:0.34:193
chr6	25084858	rs6917980	C	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:108,56:0.34:164
chr6	25084969	rs6918166	C	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=0.938;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr6	25084972	rs6918168	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.321;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr6	25086968	rs895673	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr6	25087079	.	G	GTAGACCATTCTTCT	1849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=2.393;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:119,50:0.30:169
chr6	25092020	rs73386214	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr6	25092031	rs9654585	T	A	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	25097450	rs392852	T	C	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	25106745	rs2295737	A	G	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:47,146:0.76:193
chr6	25106783	rs1923195	G	A	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	25108989	rs3215685	AC	A	4984.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:26,124:0.83:150
chr6	25108991	rs79916468	C	T	4993.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:26,124:0.83:150
chr6	25114067	rs59000944	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.855;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr6	25115176	rs57247838	CGTTTTT	C	862.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:64,26:0.29:90
chr6	25115397	rs302982	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr6	25137985	rs59778363	T	C	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.142;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr6	25279208	rs6908902	A	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	25279839	rs377675604	CT	C	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=-0.816;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:20,34:0.63:54
chr6	25280119	rs6914799	C	A	1563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=-1.383;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:29,69:0.70:98
chr6	25280123	rs2206196	C	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr6	25284945	rs112367025	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-1.346;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr6	25420223	rs79503600	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.170;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.000;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr6	25420344	rs913455	C	G	6604.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	25426640	rs5875038	AT	A	957.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.133;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:117,103:0.47:220
chr6	25426840	rs58035001	G	A	1524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=8.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-2.357;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:210,86:0.29:296
chr6	25435758	rs9467515	A	G	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:98,191:0.66:289
chr6	25450026	rs9295661	C	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	25452223	rs11368778	T	TC	98.80	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.80;QD=19.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	25472787	rs9393646	G	A	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.586;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:204,71:0.26:275
chr6	25492296	rs1034051	C	T	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	25492364	rs1034050	A	G	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	25509976	rs4568443	T	C	5578.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	25510051	rs3915740	A	G	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.37;SOR=3.076;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	25510058	rs4559085	G	C	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.42;SOR=3.702;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	25510648	rs7453991	TA	CG	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	25511008	rs34965228	C	CAT	2300.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	25516126	rs301379	C	T	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	25516158	rs301378	G	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	25528913	rs485567	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	25554180	rs214049	C	G	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	25557132	rs67201925	G	GTT,GTTT	1308.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.320;QD=27.27;ReadPosRankSum=-0.302;SOR=0.576;set=HC	GT:AD:AF:DP	1/2:1,31,16:0.65,0.33:48
chr6	25600968	rs10456324	G	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	25605091	rs1012899	G	A	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	25606181	rs2294345	G	A	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	25665041	rs12213891	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr6	25669669	rs2328891	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr6	25669833	rs2272825	T	C	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.104;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:205,69:0.25:274
chr6	25682262	rs3765236	A	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr6	25689378	rs11327870	AT	A	2573.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:18,154:0.90:172
chr6	25689487	rs2294346	G	C	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr6	25691362	rs17492659	C	T	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:94,151:0.62:245
chr6	25701691	rs6928384	C	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	25726187	rs16890971	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr6	25726214	rs78532821	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr6	25726343	rs6940348	C	T	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr6	25727448	rs16890972	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:105,48:0.31:153
chr6	25727527	rs17320558	T	A	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=0.916;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:37,81:0.69:118
chr6	25762241	rs34932751	T	C	6099.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:137,286:0.68:423
chr6	25769349	rs1892251	T	C	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	25769440	rs78843371	A	T	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.012;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:91,26:0.22:117
chr6	25769510	rs2328892	A	G	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr6	25770760	rs9467594	G	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr6	25777299	rs79746315	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.217;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=13.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=1.319;SOR=0.034;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr6	25778055	rs12201071	C	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:65,91:0.58:156
chr6	25778260	rs142909296	C	CTGATGAATATTCA	2545.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:53,66:0.55:119
chr6	25798932	rs1165215	G	A	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	25801057	rs1165210	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	25813150	rs1165196	G	A	6869.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	25819532	rs45493498	C	T	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr6	25849620	rs942379	A	G	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr6	25849779	rs1165189	A	C	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	25849838	rs1165188	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr6	25850845	rs56027330	C	T	5174.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:111,221:0.67:332
chr6	25862466	rs1165165	C	T	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	26017675	rs62000984	A	G	10355.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:189,419:0.69:608
chr6	26021813	rs9467664	A	T	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	26031868	rs2213284	G	A	6746.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	26033506	rs2230655	G	A	9305.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr6	26033641	rs2230654	G	A	10810.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr6	26033809	rs3842706	T	TAAG	19029.73	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr6	26044369	rs2032447	A	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	26045929	rs3752416	T	C	11044.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr6	26046158	rs11755492	T	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr6	26056549	rs10425	A	G	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr6	26093236	rs1800758	G	A	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,61:0.73:84
chr6	26094367	rs1572982	G	A	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	26104071	rs10636318	G	GAAAA	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.667;QD=23.23;ReadPosRankSum=-1.012;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr6	26108375	rs72834678	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr6	26124823	rs116440410	C	G	6157.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:132,285:0.68:417
chr6	26158286	.	A	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.520;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr6	26184102	rs7766641	G	A	10213.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:152,440:0.74:592
chr6	26199524	rs438534	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	26200083	rs1059486	A	G	9048.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:182,364:0.67:546
chr6	26205178	rs116339316	C	A	4984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=-1.440;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:105,221:0.68:326
chr6	26271713	rs9393690	A	T	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:28,98:0.78:126
chr6	26285560	rs2393592	A	G	13672.77	.	AC=1;AF=0.500;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	0/1:242,586:0.71:828
chr6	26285683	rs2393593	T	C	19608.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr6	26285867	rs3999544	C	T	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	26365702	.	C	CTGTG	463.73	.	AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=28.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	26374549	rs11758089	T	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr6	26374658	rs2073526	G	A	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	26385113	rs4490658	A	G	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.998;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:95,34:0.26:129
chr6	26385170	rs61364019	G	GT	1539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.017;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:230,96:0.29:326
chr6	26390830	rs2076029	T	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=1.237;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr6	26393021	rs1614887	G	A	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr6	26406053	rs3857549	C	T	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:240,112:0.32:352
chr6	26406255	rs3857550	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.565;MLEAC=1;MLEAF=0.500;MQ=50.59;MQRankSum=-5.086;QD=1.79;ReadPosRankSum=-0.696;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:141,26:0.16:167
chr6	26410011	rs41266841	C	G	3657.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:51,162:0.76:213
chr6	26422260	rs1796522	G	A	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr6	26423560	rs4320356	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:89,37:0.29:126
chr6	26428842	rs1741740	A	G	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	26444033	rs114488875	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:89,13:0.13:102
chr6	26444168	rs143665311	C	T	5098.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:182,235:0.56:417
chr6	26451888	rs6935678	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr6	26467987	rs114905060	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,40:0.36:112
chr6	26468660	rs3734544	G	A	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=3.543;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=5.00;ReadPosRankSum=0.767;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:247,90:0.27:337
chr6	26501768	rs2295593	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr6	26505135	rs3736780	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr6	27114883	rs6919033	C	T	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.712;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-1.395;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:380,118:0.24:498
chr6	27216848	rs1234145	T	C	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	27220842	.	T	C	902.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr6	27222361	rs5030968	G	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr6	27253799	rs56935383	GC	G	1240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.151;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:193,54:0.22:247
chr6	27277402	rs6456773	C	T	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	27277716	rs61736082	A	T	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:156,89:0.36:245
chr6	27278020	rs16897515	C	A	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=6.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.254;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:116,44:0.28:160
chr6	27279185	rs16897553	A	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.260;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:129,41:0.24:170
chr6	27326863	rs2235232	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr6	27327607	rs34125661	GT	G	790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.152;QD=5.45;ReadPosRankSum=0.892;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:87,58:0.40:145
chr6	27356527	rs13220817	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	27356867	rs4713091	A	G	10827.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr6	27356902	rs10807020	A	G	6633.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:127,281:0.69:408
chr6	27356925	rs10807021	T	G	5735.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:116,245:0.68:361
chr6	27357308	rs6904883	T	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr6	27782010	rs9368532	A	G	3020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.625;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-2.092;QD=34.33;ReadPosRankSum=-0.655;SOR=1.593;set=HC	GT:AD:AF:DP	0/1:16,72:0.82:88
chr6	27782013	rs9380019	C	A	2988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-2.072;QD=32.49;ReadPosRankSum=-0.527;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:17,75:0.82:92
chr6	27792221	rs200499	C	T	14448.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.64;QD=44.46;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	27792228	rs200498	T	C	14357.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=44.18;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	27833629	rs73386634	T	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.907;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.066;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr6	27834877	rs11970638	T	C	2418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.217;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:546,165:0.23:711
chr6	27858720	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.473;QD=3.25;ReadPosRankSum=-0.551;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr6	27860785	.	G	T	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.559;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:276,82:0.23:358
chr6	27880165	.	T	C	173.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr6	28117162	rs6910942	C	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr6	28117443	rs2622322	C	G	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	28120724	rs9348795	T	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr6	28134368	rs1150674	A	G	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:57,144:0.72:201
chr6	28196454	rs17776284	G	A	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:55,143:0.72:198
chr6	28197186	rs34477097	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=6.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=1.326;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr6	28198281	rs1233713	A	G	9586.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr6	28198456	rs9468317	T	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:165,82:0.33:247
chr6	28198831	rs2299029	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,31:0.29:106
chr6	28212748	rs13408	G	A	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	28215446	rs1233710	C	T	1979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=1.139;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:312,116:0.27:428
chr6	28215641	rs2235359	T	G	5287.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:82,217:0.73:299
chr6	28216027	rs2235358	A	G	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:48,138:0.74:186
chr6	28219270	rs1736904	G	A	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-6.655;QD=3.40;ReadPosRankSum=1.319;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:259,85:0.25:344
chr6	28219826	rs1736895	G	A	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	28227273	rs144553865	C	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:188,87:0.32:275
chr6	28227436	rs12000	A	G	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	28227604	rs1635	C	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-1.852;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:173,50:0.22:223
chr6	28227860	rs3734564	G	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.331;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:154,56:0.27:210
chr6	28228342	rs1679709	A	G	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.481;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	28239681	rs2394049	A	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	28239932	rs61622742	T	TG	6125.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	28255040	rs1150721	G	C	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	28264681	rs3800324	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:108,46:0.30:154
chr6	28264692	rs3800325	C	G	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:36,96:0.73:132
chr6	28264717	rs3800326	C	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:22,64:0.74:86
chr6	28265595	.	T	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=1.574;QD=6.33;ReadPosRankSum=1.880;SOR=2.655;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr6	28268497	rs2281043	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:32,86:0.73:118
chr6	28268667	rs148252586	G	A	3987.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:88,200:0.69:288
chr6	28268824	rs33932084	A	G	1759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.332;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:253,102:0.29:355
chr6	28269407	rs16893917	G	A	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-0.300;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:314,103:0.25:417
chr6	28269663	rs1997660	A	G	12087.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr6	28270047	rs6456811	C	G	6431.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:141,275:0.66:416
chr6	28294550	rs853684	T	C	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr6	28295151	rs116341415	A	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:128,62:0.33:190
chr6	28321544	rs1474589	G	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr6	28327608	.	AGGAGCAGATCCTGGAGCTGCTGGTGCT	A	2966.73	.	AC=1;AF=0.500;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	0/1:53,79:0.60:132
chr6	28327931	rs34299481	AT	A	1307.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:30,74:0.71:104
chr6	28329037	rs1555046	C	G	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:11,48:0.81:59
chr6	28331127	rs13201752	AA	GC	9143.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;JOINED;set=Intersection	GT:AD:AF:DP	0/1:90,226:0.72:316
chr6	28331252	rs213228	A	C	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:45,92:0.67:137
chr6	28333396	rs17313059	T	C	5793.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:121,257:0.68:378
chr6	28334079	rs55924797	CAG	C	9090.73	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:112,228:0.67:340
chr6	28350479	rs2232438	A	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr6	28358320	rs1361385	A	G	9380.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:242,442:0.65:684
chr6	28358335	rs1416918	G	C	17600.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:233,452:0.66:685
chr6	28358893	rs2232434	T	C	6282.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:108,261:0.71:369
chr6	28359170	rs2859348	A	G	10884.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr6	28360571	rs17392982	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	28402260	rs17315648	T	C	5114.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:78,220:0.74:298
chr6	28403225	rs2071965	C	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:86,123:0.59:209
chr6	28403541	rs61653240	T	TA	6529.73	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:218,372:0.63:590
chr6	28403603	rs11752919	T	C	13748.77	.	AC=1;AF=0.500;AN=2;DB;DP=903;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:290,609:0.68:899
chr6	28403629	rs57126418	T	C	13218.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:271,574:0.68:845
chr6	28473325	rs2071966	T	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:54,74:0.58:128
chr6	28474218	rs974334	C	G	7455.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	29912935	rs2916802	C	T	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.21;QD=30.44;SOR=2.129;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	30859335	.	A	T	416.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=30.89;QD=23.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	31322340	rs3926873	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	31322470	rs2442717	C	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	31322803	rs17193040	G	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	31322996	rs2074496	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.68;QD=27.66;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	33408465	rs138475712	TTC	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.177;MLEAC=1;MLEAF=0.500;MQ=46.03;MQRankSum=-0.989;QD=3.08;ReadPosRankSum=-2.087;SOR=2.000;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr6	33541719	rs513349	A	G	2504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.125;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:366,142:0.28:508
chr6	33542523	rs9296095	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.552;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.450;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr6	33553580	rs394199	C	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr6	33561164	rs210163	C	T	10278.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr6	33608379	rs4713647	T	C	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	33623509	rs78064999	T	C	3287.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:42,141:0.77:183
chr6	33625592	rs3831080	CTG	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=1.264;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:84,18:0.18:102
chr6	33625600	rs3831079	GT	G	795.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:76,32:0.30:108
chr6	33630624	rs2296339	C	T	5164.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	33630816	rs2296338	G	A	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	33630846	rs9366827	A	G	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	33631155	rs5875457	TGGGAGG	T	4446.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	33631163	rs3068491	T	C	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	33631241	rs143705174	TC	T	929.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:146,42:0.22:188
chr6	33636232	rs9380372	T	C	17786.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr6	33636907	rs2077163	C	T	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:54,168:0.76:222
chr6	33638657	rs2274198	G	A	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:20,67:0.77:87
chr6	33641379	rs1803831	T	C	7145.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:175,333:0.66:508
chr6	33641956	rs7769838	T	C	11535.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr6	33643558	rs2229637	G	A	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:63,186:0.75:249
chr6	33644768	rs2068236	T	C	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	33644773	rs4713652	T	A	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	33647936	rs111990331	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	33648144	rs11967839	C	T	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr6	33648228	rs2229638	C	T	8601.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr6	33650430	rs2296331	G	C	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr6	33651277	rs2296328	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	33652542	rs77322067	C	T	13595.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:239,583:0.71:822
chr6	33653111	rs942637	T	C	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	33653638	rs6915878	C	T	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	33654378	rs4640882	A	G	8028.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.04;SOR=2.123;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	33654386	rs79217630	G	A	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=2.749;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	33654897	rs942642	T	C	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr6	33660411	rs653536	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr6	33694659	rs34252064	G	A	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr6	33694691	rs78847102	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr6	33703230	rs545787	G	A	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:47,159:0.77:206
chr6	33740382	rs2296744	G	A	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:242,96:0.28:338
chr6	33740592	rs4711349	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=8.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.235;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:79,28:0.26:107
chr6	33744711	rs2296746	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr6	33744882	rs2296747	C	G	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.348;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.220;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:248,76:0.23:324
chr6	33745071	rs2296748	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:76,50:0.40:126
chr6	33748831	rs2182658	T	G	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=1.066;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:140,59:0.30:199
chr6	33749030	rs73744675	G	A	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.440;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.583;QD=4.03;ReadPosRankSum=2.510;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:197,69:0.26:266
chr6	33752013	rs943479	A	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr6	33754396	rs9394167	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr6	33754592	rs4711351	G	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=6.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=3.003;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:214,50:0.19:264
chr6	33756026	rs6457741	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:81,31:0.28:112
chr6	33768897	rs2281820	A	G	2335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.970;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:336,136:0.29:472
chr6	33992329	rs59998731	T	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr6	33995871	rs7745888	A	G	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:131,56:0.30:187
chr6	34003314	rs34906910	A	T	713.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,25:0.27:91
chr6	34003336	.	T	A	819	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=26;MQ=60.0;NF=36;NR=13;PP=819;QD=17.4239022969;SC=GAATGAGGCATGAAAGAAGGC;SbPval=0.68;Source=Platypus;TC=148;TCF=104;TCR=44;TR=49;WE=34003344;WS=34003326;set=Platypus	GT:AD:AF:DP	1/0:99,49:0.33:148
chr6	34003336	.	T	TGAAAGAAGGCAGAATGAGGCAA	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=1.030;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr6	34003583	rs61745457	G	A	3026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-2.901;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:568,202:0.26:770
chr6	34004379	.	A	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=2.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.575;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:106,20:0.16:126
chr6	34008006	rs2229900	A	G	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.108;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.952;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:170,61:0.26:231
chr6	34026938	rs2451359	C	T	15167.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr6	34069941	.	G	A	548.77	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr6	34211341	rs35381162	GT	G	3624.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:55,113:0.67:168
chr6	34212743	rs2780219	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	34213296	rs1150783	T	C	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	34214130	rs80309674	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr6	34214322	rs1150781	C	G	6623.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:127,300:0.70:427
chr6	34214994	rs3997805	G	GTC	4215.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	34215221	rs928482	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:95,89:0.48:184
chr6	34215228	rs1150780	G	A	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=60.965;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.358;QD=10.67;ReadPosRankSum=-1.222;SOR=3.263;set=HC	GT:AD:AF:DP	0/1:89,96:0.52:185
chr6	34386219	rs41269040	G	A	5685.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:125,256:0.67:381
chr6	34500311	rs142849257	CCCCCT	C	3813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=6.521;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.941;QD=12.42;ReadPosRankSum=-0.539;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:200,107:0.35:307
chr6	34664207	rs3800456	T	G	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=2.814;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	34735652	rs371572218	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.770;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr6	34850660	rs4646933	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr6	34855748	rs1051115	G	C	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:166,67:0.29:233
chr6	34949451	rs3817473	C	T	5782.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:89,238:0.73:327
chr6	34949607	rs2293242	C	T	19555.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,720:1.00:720
chr6	34962019	rs11755713	G	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	34962060	rs3823438	G	A	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:27,84:0.76:111
chr6	34977663	rs9380481	C	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.70;QD=31.50;SOR=5.926;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	34977813	rs12661991	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	35027927	rs820085	T	C	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:42,61:0.59:103
chr6	35054185	rs13216424	G	A	16485.77	.	AC=1;AF=0.500;AN=2;DB;DP=1019;set=Intersection	GT:AD:AF:DP	0/1:290,725:0.71:1015
chr6	35056443	rs2005	A	G	9790.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:197,428:0.68:625
chr6	35058117	rs707968	A	G	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr6	35085104	rs16871728	C	T	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:82,168:0.67:250
chr6	35086394	rs41270050	C	A	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:12,56:0.82:68
chr6	35088381	rs2234045	C	G	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:84,131:0.61:215
chr6	35088608	rs35106671	T	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr6	35088855	rs13203612	C	G	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:75,153:0.67:228
chr6	35088949	rs13206654	A	G	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.76;ReadPosRankSum=-0.551;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr6	35088956	rs2494096	A	G	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.55;ReadPosRankSum=-1.317;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr6	35090097	rs2234044	T	C	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:57,89:0.61:146
chr6	35107682	rs3777748	T	A	1033.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr6	35107774	rs34103100	A	T	8324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.41;ReadPosRankSum=1.096;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:89,204:0.70:293
chr6	35107781	rs34715060	G	A	8700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=2.141;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:109,226:0.67:335
chr6	35108553	rs35693439	T	G	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:57,130:0.70:187
chr6	35109095	rs78614904	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr6	35109157	rs111624231	C	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=1.331;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr6	35203203	rs13214290	T	G	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=1.470;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:68,41:0.38:109
chr6	35205541	rs1929849	T	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:63,22:0.26:85
chr6	35205881	rs734538	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:105,44:0.30:149
chr6	35216296	rs2071920	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:97,39:0.29:136
chr6	35258539	rs763157	C	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.706;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:103,37:0.26:140
chr6	35259261	rs1894650	C	G	1315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=4.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.180;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:251,85:0.25:336
chr6	35259646	rs9366883	G	C	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=3.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.645;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:279,106:0.28:385
chr6	35260503	rs1557567	C	T	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:475,227:0.32:702
chr6	35260530	rs1557568	C	T	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:434,213:0.33:647
chr6	35285720	rs2395617	A	C	2474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.473;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:392,151:0.28:543
chr6	35378778	rs2016520	C	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=5.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.101;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:95,34:0.26:129
chr6	35391787	rs2076167	C	T	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.065;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:182,72:0.28:254
chr6	35423489	rs7757405	A	G	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.551;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr6	35423662	rs4713867	A	C	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:153,70:0.31:223
chr6	35423886	rs7761870	C	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:176,80:0.31:256
chr6	35424188	rs3800377	A	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.800;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr6	35424268	rs4713868	A	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr6	35425263	rs9470033	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,41:0.34:120
chr6	35427556	rs6457823	G	A	1831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.087;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:333,116:0.26:449
chr6	35430686	rs9462088	G	A	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:122,44:0.27:166
chr6	35434273	rs16876572	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:62,26:0.30:88
chr6	35437831	rs142495436	T	TA	798.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:78,32:0.29:110
chr6	35442997	rs41270072	C	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:63,31:0.33:94
chr6	35445211	rs3215481	GC	G	586.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,26:0.30:88
chr6	35448189	rs760782	T	C	2749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.528;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:373,161:0.30:534
chr6	35452346	rs11756089	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:188,81:0.30:269
chr6	35454505	rs11964048	C	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:84,40:0.32:124
chr6	35473252	rs2395628	C	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=1.321;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:103,38:0.27:141
chr6	35474073	rs12215920	C	G	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:85,44:0.34:129
chr6	35477025	rs2064318	C	G	2897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=0.927;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:261,89:0.25:350
chr6	35477032	rs2064317	A	G	3014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.933;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=0.796;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:279,96:0.26:375
chr6	35477152	rs7752728	C	T	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-1.101;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:541,155:0.22:696
chr6	35477303	rs9296155	T	C	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.182;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:123,40:0.25:163
chr6	35479574	rs7764472	G	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:65,26:0.29:91
chr6	35479876	.	C	G	32	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=3;HapScore=2;MGOF=24;MMLQ=24;MQ=60.0;NF=2;NR=2;PP=32;QD=16.6928031368;SC=CAGGGCTCGGCGACACCCGCG;SbPval=0.58;Source=Platypus;TC=14;TCF=6;TCR=8;TR=4;WE=35479884;WS=35479866;set=Platypus	GT:AD:AF:DP	0/1:10,4:0.29:14
chr6	35480010	rs200344441	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.735;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=8.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-1.507;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:76,13:0.15:89
chr6	35480262	rs1540910	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:47,16:0.25:63
chr6	35480524	.	C	CG	2518.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=5.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.074;SOR=1.487;set=HC	GT:AD:AF:DP	0/1:233,77:0.25:310
chr6	35480525	rs2273004	A	G	2523.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.876;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=5.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-0.182;SOR=1.575;set=HC	GT:AD:AF:DP	0/1:235,77:0.25:312
chr6	35480526	rs201979805	CTCCCCAT	C	2496.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=7.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.045;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:240,75:0.24:315
chr6	35544942	rs34866878	G	A	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.687;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:174,68:0.28:242
chr6	35555056	rs73746494	T	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr6	35610340	rs12110366	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr6	35610681	rs2143404	T	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr6	35705814	rs35769368	C	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr6	35705892	rs2817041	T	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=3.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.003;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:108,35:0.24:143
chr6	35715303	rs2252881	G	C	1584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=0.086;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:257,94:0.27:351
chr6	35716641	rs61731466	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:105,46:0.30:151
chr6	35745655	rs2478467	C	T	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.555;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:92,26:0.22:118
chr6	35748931	rs34109614	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=1.061;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:84,35:0.29:119
chr6	35755658	rs12211728	A	G	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.372;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:220,68:0.24:288
chr6	35765068	rs3748050	T	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.135;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.575;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:79,36:0.31:115
chr6	35765151	rs3748049	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr6	35803283	rs2859420	C	T	1547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=6.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.071;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:258,95:0.27:353
chr6	35923246	rs2295852	T	C	7080.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr6	35943312	rs80171732	A	G	1691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.729;QD=4.07;ReadPosRankSum=1.260;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:307,109:0.26:416
chr6	35943339	rs111959068	G	GTT	1081.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.627;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:129,81:0.39:210
chr6	35950075	rs9470186	G	C	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:37,113:0.75:150
chr6	35979858	rs58604706	A	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr6	35980121	rs743923	C	T	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.594;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:202,76:0.27:278
chr6	36020688	rs61763105	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr6	36098333	rs12191295	T	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.595;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:148,46:0.24:194
chr6	36098410	rs1059227	A	C	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.725;QD=3.53;ReadPosRankSum=-0.366;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:254,86:0.25:340
chr6	36099274	rs114972302	T	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr6	36103921	rs2252430	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr6	36104803	rs2815812	T	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,31:0.32:98
chr6	36189887	rs2301422	C	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.215;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:70,11:0.14:81
chr6	36259369	.	C	G	635	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=10;HapScore=2;MGOF=3;MMLQ=22;MQ=59.15;NF=0;NR=30;PP=635;QD=22.3257070849;SC=ACGGAGGGGGCGGGGGAGGGC;SbPval=1.0;Source=Platypus;TC=89;TCF=34;TCR=55;TR=30;WE=36259377;WS=36259359;set=Platypus	GT:AD:AF:DP	0/1:59,30:0.34:89
chr6	36260858	rs2239795	C	T	1361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=0.750;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:180,82:0.31:262
chr6	36261885	rs4713949	A	G	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.529;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.214;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:86,33:0.28:119
chr6	36275458	rs4713956	T	C	6864.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:129,303:0.70:432
chr6	36287312	rs743852	G	C	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:59,125:0.68:184
chr6	36290030	rs12190546	C	G	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:19,74:0.80:93
chr6	36294915	rs6923009	T	A	16258.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr6	36296514	rs41270100	C	T	4014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=4.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-0.851;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:95,188:0.66:283
chr6	36341294	rs3213530	C	T	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=1.200;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:100,48:0.32:148
chr6	36353169	rs6901513	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr6	36355372	rs2234071	T	C	1121.84	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:6,48:0.89:54
chr6	36359696	rs199820722	TTA	T	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=1.519;QD=11.57;ReadPosRankSum=-0.269;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:11,39:0.78:50
chr6	36393582	.	AAT	A	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.905;QD=2.40;ReadPosRankSum=-1.847;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr6	36452603	rs201092661	TA	T	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.528;QD=2.47;ReadPosRankSum=-1.367;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:111,59:0.35:170
chr6	36569717	rs58662018	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-2.740;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr6	36645588	rs762624	A	C	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=7.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.547;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:167,56:0.25:223
chr6	36645696	rs2395655	A	G	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=3.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.058;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:169,57:0.25:226
chr6	36652339	rs3176352	C	G	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=4.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-1.942;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:188,66:0.26:254
chr6	36686272	rs236487	C	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	36686407	rs236486	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	36689030	rs236478	A	C	15878.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr6	36689630	rs236477	C	T	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	36689961	rs183541	A	C	19253.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:2,713:1.00:715
chr6	36695519	rs236472	T	C	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:41,158:0.79:199
chr6	36695661	rs236471	A	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr6	36696330	rs236470	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr6	36698285	rs190201	G	C	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=8.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.38;ReadPosRankSum=2.506;SOR=2.141;set=HC	GT:AD:AF:DP	0/1:13,44:0.77:57
chr6	36698294	rs236462	G	A	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.30;ReadPosRankSum=2.115;SOR=1.824;set=HC	GT:AD:AF:DP	0/1:14,46:0.77:60
chr6	36698556	rs57522248	AC	A	1767.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,50:0.79:63
chr6	36698561	rs13199451	C	A	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr6	36711406	rs3213534	G	A	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:72,140:0.66:212
chr6	36712962	rs743870	C	T	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	36713263	rs763046	A	G	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	36714139	rs3213535	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr6	36714491	rs929051	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr6	36715833	rs1010790	A	T	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	36715921	rs3213537	C	T	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.052;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:229,79:0.26:308
chr6	36723884	rs236443	C	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-0.145;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr6	36723916	rs12203137	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr6	36733132	rs763048	G	A	24399.77	.	AC=2;AF=1.00;AN=2;DB;DP=928;set=Intersection	GT:AD:AF:DP	1/1:0,925:1.00:925
chr6	36746581	rs236418	C	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.826;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr6	36759741	rs9366916	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr6	36766292	rs6940728	C	T	5375.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	36767920	rs11419511	T	TG	1276.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	36789940	rs3842097	C	CG	4943.73	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:64,189:0.75:253
chr6	36790630	rs9394384	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr6	36790639	rs4711470	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr6	36790689	rs17374068	T	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:78,48:0.38:126
chr6	36824399	rs2071823	C	T	5729.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:87,254:0.74:341
chr6	36842427	rs2303993	C	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr6	36853685	rs11461876	G	GC	660.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	36853786	rs11461877	A	AG	3334.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	36853857	rs5875560	T	TCGC	10879.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	36884316	rs148571454	C	G	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-2.114;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:238,60:0.20:298
chr6	36884490	rs2293394	C	T	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	36887476	rs11542163	C	T	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:115,74:0.39:189
chr6	36922385	rs1405070	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	36922684	rs1405069	A	C	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	36930610	.	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.294;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-0.332;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr6	36931162	rs2296934	A	G	8394.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:127,325:0.72:452
chr6	36931491	rs34165286	G	A	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:50,175:0.78:225
chr6	36931820	rs707543	A	G	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:121,64:0.35:185
chr6	36936606	rs697750	T	C	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:376,182:0.33:558
chr6	36944495	rs708007	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	36949527	rs2293390	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:86,34:0.28:120
chr6	36954022	rs142461260	C	A	163.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.43;ReadPosRankSum=1.150;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr6	36976637	rs831510	G	C	5516.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:84,234:0.74:318
chr6	36976901	rs6927538	C	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,33:0.35:93
chr6	36976946	rs4714032	G	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr6	36978745	rs1724088	G	A	10619.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:208,484:0.70:692
chr6	36978834	rs1753288	A	G	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:90,182:0.67:272
chr6	36978879	rs1724087	T	C	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	36982664	rs6916366	C	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:205,91:0.31:296
chr6	36988364	rs831504	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr6	36988664	.	A	ATG	91	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=27;MQ=60.28;NF=0;NR=8;PP=91;QD=11.875;SC=GTATGTATGCATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=32;TCF=1;TCR=31;TR=8;WE=36988673;WS=36988654;set=Platypus	GT:AD:AF:DP	0/1:24,8:0.25:32
chr6	36989391	rs831502	G	C	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.376;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:200,65:0.25:265
chr6	36990736	rs831499	T	C	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:356,164:0.32:520
chr6	36990915	rs13217855	G	A	32568.77	.	AC=1;AF=0.500;AN=2;DB;DP=2157;set=Intersection	GT:AD:AF:DP	0/1:575,1551:0.73:2126
chr6	37138023	rs59116171	GGCA	G	7580.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	37138220	rs262936	C	G	14405.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr6	37139322	rs262938	T	C	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	37180237	rs1224329	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr6	37180355	rs1150789	G	A	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:72,154:0.68:226
chr6	37180523	rs1150790	A	G	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:86,198:0.70:284
chr6	37237544	rs12528367	T	C	11605.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	0/1:198,547:0.73:745
chr6	37250112	rs195753	A	G	12083.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr6	37252210	rs3818136	C	T	4518.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:88,200:0.69:288
chr6	37280844	rs149708	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	37321791	rs4714059	G	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr6	37328215	rs60123670	C	CT	3509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.983;QD=6.30;ReadPosRankSum=-1.097;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:416,141:0.25:557
chr6	37328358	rs370830769	A	G	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:306,129:0.30:435
chr6	37328399	rs34469147	CT	C	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.544;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:104,59:0.36:163
chr6	37348920	rs2284923	C	T	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:54,124:0.70:178
chr6	37349033	rs2284922	G	A	5782.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:115,257:0.69:372
chr6	37438767	rs78841447	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:149,69:0.32:218
chr6	37443950	rs9462313	G	A	3346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=-0.092;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:62,151:0.71:213
chr6	37447075	rs2797790	G	A	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	37450914	rs10692	T	C	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	37451111	rs76904111	C	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=13.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=1.017;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chr6	37453082	rs74609302	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:85,37:0.30:122
chr6	37475485	.	G	GTGGTGGTGGGGGGTGGGGGTAGGTGGTGGTGGGGGGTGGGGGGTAGA	342.14	.	AC=1;AF=0.500;AN=2;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;QD=31.10;SOR=4.977;set=HC	GT:AD:AF:DP	0/1:0,11:1.00:11
chr6	37501967	rs2797786	A	G	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	37502110	rs62406767	C	G	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:80,158:0.66:238
chr6	37502585	rs1317487	C	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr6	37522966	rs6942122	T	C	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	37606190	rs41273094	T	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr6	37617519	rs708022	A	C	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.21;ReadPosRankSum=-0.289;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:11,46:0.81:57
chr6	37617529	rs708021	T	C	2157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.724;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.97;ReadPosRankSum=-0.265;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:12,60:0.83:72
chr6	37617569	rs708020	C	T	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:25,96:0.79:121
chr6	37617657	rs117370647	G	A	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.756;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:182,58:0.24:240
chr6	37618202	rs804816	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr6	37620129	rs2273109	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:138,60:0.30:198
chr6	37622475	rs78956819	T	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:88,37:0.30:125
chr6	37623566	rs3846874	C	T	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.118;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:224,75:0.25:299
chr6	37623626	rs13204070	C	T	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:39,147:0.79:186
chr6	37626142	rs2273110	C	T	8224.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:183,364:0.67:547
chr6	37787585	rs11544071	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr6	37897821	rs370975464	CT	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.515;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr6	37971449	rs146304338	G	GT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.247;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr6	38084569	rs2295791	C	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr6	38119942	rs16890395	A	G	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,58:0.61:95
chr6	38142719	rs6906771	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr6	38147245	rs72853675	G	C	8213.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:151,371:0.71:522
chr6	38147355	rs6458044	A	G	12626.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr6	38472125	rs9380754	GG	CT	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,59:0.76:78
chr6	38520436	rs2748154	G	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	38560215	rs2180106	T	G	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr6	38650588	rs1130534	T	A	7888.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:145,365:0.72:510
chr6	38670837	rs1049346	G	A	7807.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	38750740	rs73420237	A	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr6	38754502	rs1678666	A	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,65:0.77:84
chr6	38759555	rs3839625	C	CT	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=2.071;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr6	38759567	rs373284942	G	GT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.928;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr6	38773172	rs1678682	A	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr6	38773293	rs874808	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,53:0.80:66
chr6	38775336	rs1738229	T	G	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:44,79:0.64:123
chr6	38781866	rs1678690	C	G	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr6	38781931	rs1738221	A	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr6	38791555	rs1738210	C	T	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	38793812	rs1738208	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	38800209	rs1678729	T	C	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	38810313	rs1678737	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	38813412	rs61757219	G	T	6154.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:100,271:0.73:371
chr6	38816574	rs1678744	T	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:137,61:0.31:198
chr6	38820451	rs9369085	G	A	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:62,143:0.70:205
chr6	38820544	rs1678746	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,37:0.33:112
chr6	38820599	rs9380787	T	G	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=0.516;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:16,43:0.73:59
chr6	38825329	rs2061907	C	T	4977.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:112,222:0.66:334
chr6	38828424	rs34840510	G	GT	1101.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr6	38828453	rs6458073	A	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr6	38840601	rs2235719	G	A	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:61,149:0.71:210
chr6	38841101	rs9380795	G	A	3644.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:89,161:0.64:250
chr6	38843279	rs77031115	CC	TT	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=-1.044;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr6	38843283	rs35696175	C	T	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=-1.231;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr6	38843426	rs6458080	C	T	4207.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:58,181:0.76:239
chr6	38850809	rs862432	C	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,33:0.33:101
chr6	38851308	rs4714191	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr6	38851669	rs4714192	C	T	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:98,171:0.64:269
chr6	38873960	rs7750330	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.459;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr6	38875752	rs4452640	A	G	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-1.437;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:192,70:0.27:262
chr6	38877605	rs4714198	C	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:138,63:0.31:201
chr6	38882937	rs5875644	AG	A	1041.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr6	38885010	rs11291395	TA	T	531.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr6	38886012	rs113963745	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr6	38891068	rs4714199	T	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr6	38897453	rs376615002	TA	T	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.072;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:86,35:0.29:121
chr6	38899485	rs9296268	G	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	38899862	rs9296269	T	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr6	38906072	rs2073037	A	G	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:41,95:0.70:136
chr6	38913177	rs522327	A	G	6393.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr6	38913223	rs79465174	T	C	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-1.141;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:211,89:0.30:300
chr6	38919309	rs10947765	A	G	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.385;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:295,116:0.28:411
chr6	38952246	rs202194928	GCA	G	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr6	38979946	rs9296273	T	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr6	38998186	rs11966699	C	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:79,33:0.29:112
chr6	39016801	rs10305422	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr6	39033420	rs910163	A	G	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-1.754;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:52,23:0.31:75
chr6	39033427	rs910162	A	T	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-0.972;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr6	39033602	rs6918287	A	G	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=4.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.667;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:187,69:0.27:256
chr6	39033778	rs3765466	T	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=7.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=2.125;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr6	39034210	rs4711572	A	G	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.773;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:70,22:0.24:92
chr6	39034248	rs9296277	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-1.055;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr6	39040654	rs2235868	A	C	2702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.050;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:473,176:0.27:649
chr6	39041502	rs1042044	A	C	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:219,91:0.29:310
chr6	39046201	rs761387	A	G	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:195,95:0.33:290
chr6	39047035	rs5875654	CAG	C	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.948;QD=0.93;ReadPosRankSum=0.117;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:118,15:0.11:133
chr6	39048491	rs1126476	A	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.956;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:79,26:0.25:105
chr6	39162206	rs2815098	A	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	39278848	.	GCACACACACACACACACACACACACA	G,GCACACACACACACACA	1453.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=3.364;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;MQRankSum=0.533;QD=30.29;ReadPosRankSum=0.428;SOR=2.252;set=HC	GT:AD:AF:DP	1/2:3,15,30:0.31,0.62:48
chr6	39282036	rs10947804	T	C	7711.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr6	39282748	rs11756070	G	A	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	39282806	rs11756091	G	T	7249.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=1.424;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	39282806	.	GGGAAGTCCTG	TGGAAGTCCTA,TGGAAGTCCTG	2158	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=12;MMLQ=26;MQ=60.0;NF=75,114;NR=36,58;PP=2158,764;QD=19.9231340078;SC=CTTGGATATGGGGAAGTCCTG;SbPval=0.59;Source=Platypus;TC=173;TCF=115;TCR=58;TR=111,172;WE=39282824;WS=39282796;set=Platypus	GT:AF:DP	0/1:0.64:173
chr6	39282816	rs138573996	G	A	3238.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:54,135:0.71:189
chr6	39283083	rs11753141	G	A	13201.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr6	39284050	rs1535500	G	T	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	39284184	rs3734618	A	G	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	39290200	rs3734619	C	T	10334.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr6	39304211	rs3734621	A	C	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=4.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.760;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:121,54:0.31:175
chr6	39313618	rs34799567	G	GA	6765.73	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:70,189:0.73:259
chr6	39314242	rs35218076	G	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr6	39325078	rs20455	A	G	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.680;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:170,51:0.23:221
chr6	39353532	rs10655582	G	GA	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.798;QD=3.32;ReadPosRankSum=1.678;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr6	39545689	rs12697946	T	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr6	39545809	rs3830834	G	GA	2350.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:49,118:0.71:167
chr6	39563730	rs7738728	C	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	39563738	rs140081530	TA	T	84.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	39585399	rs2466406	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	39602505	rs62403326	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr6	39682367	rs303701	G	A	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.568;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:166,56:0.25:222
chr6	39693225	.	T	C	1092.77	.	AC=1;AF=0.500;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	0/1:119,55:0.32:174
chr6	39828593	rs2504099	A	T	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	39828862	rs2504098	A	C	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	39832111	rs2504787	A	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	39832363	rs2504094	C	G	572.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=10.212;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.27;ReadPosRankSum=-0.271;SOR=4.608;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr6	39832964	rs2504093	T	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	39839164	rs2504088	T	C	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	39846137	rs2504086	A	G	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr6	39851679	rs2504082	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chr6	39851818	rs3003929	G	A	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:50,99:0.66:149
chr6	39855112	rs3003945	T	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr6	39855427	rs3008810	C	T	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr6	39855490	rs5875688	C	CTGGA	1077.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr6	39864730	rs3008815	C	T	6235.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:125,268:0.68:393
chr6	39865047	rs3004067	T	C	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:98,176:0.64:274
chr6	39866805	rs3830992	A	AACAATGGGC	5125.73	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:53,129:0.71:182
chr6	39869066	rs882559	G	C	3803.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:80,160:0.67:240
chr6	39873682	rs41273136	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr6	39881102	rs7762875	A	T	6161.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:149,278:0.65:427
chr6	39884104	.	T	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.465;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:78,17:0.18:95
chr6	40399446	rs7775772	T	C	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:45,106:0.70:151
chr6	40400288	rs61731040	C	T	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:82,198:0.71:280
chr6	40996381	rs742492	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:46,13:0.22:59
chr6	40998141	rs736795	G	A	3045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.373;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:396,185:0.32:581
chr6	40998167	rs742493	T	C	7651.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:156,353:0.69:509
chr6	40998344	rs9369256	G	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:81,36:0.31:117
chr6	41000496	rs115814884	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr6	41011266	rs932399	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr6	41020205	rs6939989	A	G	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:69,40:0.37:109
chr6	41036770	rs2294695	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr6	41037778	rs2272986	C	T	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.914;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:101,49:0.33:150
chr6	41038845	rs13191323	C	T	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:308,132:0.30:440
chr6	41039100	rs56033865	G	A	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr6	41052002	rs6908595	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	41058161	.	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=4.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.081;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr6	41059169	rs10080924	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.208;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr6	41059458	rs12189627	T	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.915;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=6.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=1.827;SOR=1.539;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr6	41117586	rs34254490	T	G	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=2.851;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:105,42:0.29:147
chr6	41169021	rs5875743	C	CA	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.998;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr6	41196034	rs6458202	T	C	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-1.608;QD=29.82;ReadPosRankSum=-0.424;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:12,33:0.73:45
chr6	41196040	rs6458203	T	C	1299.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-1.351;QD=26.00;ReadPosRankSum=0.553;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr6	41196041	rs6458204	C	T	1293.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-1.351;QD=25.88;ReadPosRankSum=0.533;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr6	41196065	rs2803495	A	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr6	41196095	rs6458205	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr6	41196104	rs10700462	C	CCTT	5409.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	41196156	rs2803496	C	T	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	41196605	rs9369265	T	C	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:68,177:0.72:245
chr6	41196727	rs2101269	C	T	5914.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:81,262:0.76:343
chr6	41197785	rs9296357	T	C	4687.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:93,205:0.69:298
chr6	41197857	rs7769759	C	T	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:56,130:0.70:186
chr6	41198758	rs2803500	C	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.599;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:113,57:0.34:170
chr6	41198909	rs4337930	T	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,43:0.74:58
chr6	41199973	rs1825409	C	T	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:55,116:0.68:171
chr6	41200245	rs7746632	A	G	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:38,80:0.68:118
chr6	41204005	rs9394775	C	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:10,49:0.83:59
chr6	41204049	rs9394776	C	T	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:22,76:0.78:98
chr6	41204092	rs9349185	C	T	5354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=5.747;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.939;QD=31.31;ReadPosRankSum=-1.246;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:39,132:0.77:171
chr6	41204092	.	CTC	TTG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=1;MGOF=13;MMLQ=27;MQ=59.96;NF=73;NR=43;PP=2944;QD=20;SC=CCCCACACCCCTCTGTCATCG;SbPval=0.58;Source=Platypus;TC=154;TCF=95;TCR=59;TR=116;WE=41204102;WS=41204082;set=Platypus	GT:AD:AF:DP	0/1:38,116:0.75:154
chr6	41204094	rs9394777	C	G	5354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=5.764;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.935;QD=31.13;ReadPosRankSum=-1.575;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:39,133:0.77:172
chr6	41204329	rs9349186	A	T	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:28,83:0.75:111
chr6	41249003	rs146201760	C	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr6	41249016	rs138440638	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	41250509	rs112617855	A	AT	674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=9.733;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.984;QD=4.19;ReadPosRankSum=-1.324;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:128,33:0.20:161
chr6	41303592	rs9394782	T	C	10248.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:199,466:0.70:665
chr6	41309552	rs2236369	T	C	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr6	41309698	rs2236370	G	C	5467.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:89,230:0.72:319
chr6	41310505	rs377675188	GA	G	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.904;QD=2.16;ReadPosRankSum=0.607;SOR=1.273;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr6	41318438	rs2273962	A	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	41318578	rs115509322	T	C	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=5.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=0.746;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:89,42:0.32:131
chr6	41554993	rs11758591	G	C	8220.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:152,347:0.70:499
chr6	41613772	rs7763699	A	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.386;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:151,50:0.25:201
chr6	41620938	rs12199887	A	G	3738.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:78,170:0.69:248
chr6	41620975	rs2842657	A	G	11084.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr6	41621319	rs116296557	T	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:112,41:0.27:153
chr6	41652604	rs1062966	T	C	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.469;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:87,32:0.27:119
chr6	41657359	rs79663151	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr6	41658889	rs1015149	C	T	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:119,72:0.38:191
chr6	41659304	rs1015150	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:61,21:0.26:82
chr6	41691296	rs12664213	A	G	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:63,126:0.67:189
chr6	41704772	rs73733015	C	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=1.163;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr6	41705612	rs3804279	G	A	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.959;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:201,77:0.28:278
chr6	41708374	rs4714509	G	A	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:300,155:0.34:455
chr6	41708938	rs4711690	C	G	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:133,81:0.38:214
chr6	41721634	rs74768860	A	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.961;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=7.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-2.681;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:138,40:0.22:178
chr6	41721682	rs59644697	G	GT	1006.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:153,44:0.22:197
chr6	41740483	.	C	CGT	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.836;QD=12.26;ReadPosRankSum=-1.407;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr6	41748263	rs28360509	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr6	41748279	rs10947986	A	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	41751713	rs1342549	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr6	41753084	rs9394831	C	T	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:50,125:0.71:175
chr6	41753380	rs3747753	G	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr6	41754573	rs140326303	C	CCTT	5560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=1.538;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:400,161:0.29:561
chr6	41754576	rs9381093	C	T	9392.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:164,401:0.71:565
chr6	41755410	rs9471653	C	G	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:74,134:0.64:208
chr6	41773576	rs2185798	G	C	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-1.541;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:328,110:0.25:438
chr6	41774815	.	TA	T	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.132;QD=3.10;ReadPosRankSum=-0.339;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr6	41888827	rs2274578	C	G	4182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.07;ReadPosRankSum=1.255;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:69,176:0.72:245
chr6	41889409	rs3763273	C	A	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.358;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:135,60:0.31:195
chr6	41898096	rs2479726	A	G	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	41903782	rs1051130	A	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	41905174	rs2479717	T	A	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	42025058	rs6917299	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr6	42025402	rs1134218	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr6	42036395	rs2492926	A	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	42044945	rs3800286	G	A	3898.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:69,161:0.70:230
chr6	42045026	rs2493839	G	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,48:0.32:151
chr6	42045171	rs2492931	A	G	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.791;QD=3.33;ReadPosRankSum=-0.665;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:391,123:0.24:514
chr6	42054346	rs2492937	G	A	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=8.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.214;SOR=1.272;set=HC	GT:AD:AF:DP	0/1:165,55:0.25:220
chr6	42054380	rs2492938	G	T	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.054;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:222,66:0.23:288
chr6	42072692	rs74901308	G	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr6	42072989	rs9394863	G	A	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:353,169:0.32:522
chr6	42073958	rs9394865	C	T	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:171,80:0.32:251
chr6	42074106	rs9394866	A	G	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	42074357	rs188670180	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=8.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.422;SOR=2.392;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr6	42075377	rs9394868	A	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr6	42075461	rs9381137	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr6	42077870	rs9471765	A	G	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr6	42094585	.	C	CA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=5.198;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.877;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr6	42094614	rs9471776	A	G	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-1.049;QD=12.13;ReadPosRankSum=-2.006;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:28,47:0.63:75
chr6	42094699	rs6940849	G	T	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	42110263	rs6911399	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	42123317	rs1132156	A	C	7776.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr6	42141326	rs6937603	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.428;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr6	42146298	rs1467448	G	C	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:126,66:0.34:192
chr6	42153410	rs114773899	C	T	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:86,164:0.66:250
chr6	42153609	rs9471799	C	T	10886.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr6	42154104	rs6909313	G	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	42155611	rs9462780	T	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=26.67;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	42155666	rs9462781	C	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	42155930	rs9462782	G	A	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	42156031	rs151241798	CGTGTGTGTGTGTGTGT	C	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	42156239	rs73434275	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:18,59:0.77:77
chr6	42162575	rs1474867	A	G	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	42176451	rs6936290	G	A	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	42176555	rs6936173	C	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=4.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.389;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:148,49:0.25:197
chr6	42176744	rs7771519	G	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	42182183	rs1884317	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	42185564	rs9471809	A	C	12290.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr6	42185712	rs9471810	A	T	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	42204256	rs73733124	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr6	42222436	rs9471828	G	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-1.121;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr6	42227324	rs73733129	A	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:79,34:0.30:113
chr6	42233414	rs16895477	A	G	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=0.612;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:108,50:0.32:158
chr6	42237463	rs16895481	C	T	30.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr6	42532102	rs3749897	C	T	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.121;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:29,57:0.66:86
chr6	42541802	rs16895843	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr6	42559866	rs3834849	ATT	A	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.103;QD=5.65;ReadPosRankSum=-1.832;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:67,27:0.29:94
chr6	42562027	rs6905054	A	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:107,49:0.31:156
chr6	42582986	rs74452904	T	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.220;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=14.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.610;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr6	42585270	rs73440658	C	T	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.067;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:80,31:0.28:111
chr6	42600319	rs5014584	A	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	42608122	rs373742087	GT	G	911.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.550;QD=27.63;ReadPosRankSum=2.524;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr6	42608124	.	GTGTGTGTGTGTGTGT	G	780.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.904;QD=23.66;ReadPosRankSum=3.318;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:7,26:0.79:33
chr6	42612312	rs7767888	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr6	42615941	rs79951236	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:60,25:0.29:85
chr6	42619763	rs73424409	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.362;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr6	42625949	rs80158383	A	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.074;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr6	42626085	rs73424414	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr6	42627258	rs60784392	TAC	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=-1.032;QD=3.72;ReadPosRankSum=-0.983;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr6	42627280	.	CACACACACACACACACACACT	C	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=61.80;MQRankSum=6.313;QD=3.86;ReadPosRankSum=-2.821;SOR=1.557;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr6	42641497	rs73424450	T	G	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.616;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:216,76:0.26:292
chr6	42641704	rs761537	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr6	42641972	rs16895945	A	G	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.044;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:162,62:0.28:224
chr6	42647362	rs59687643	G	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:77,31:0.29:108
chr6	42650772	rs6906859	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr6	42657473	rs115120863	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.323;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:64,10:0.14:74
chr6	42666061	rs434102	T	C	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.792;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.790;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:157,49:0.24:206
chr6	42666145	rs425876	C	T	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.939;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:408,147:0.26:555
chr6	42666164	rs390659	G	C	2240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=1.942;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:450,152:0.25:602
chr6	42666365	rs389999	G	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr6	42672416	rs3818086	A	T	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:55,106:0.66:161
chr6	42713274	rs2234028	G	A	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-1.326;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:175,62:0.26:237
chr6	42713618	rs2234026	A	G	15106.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr6	42713779	rs2234024	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:162,65:0.29:227
chr6	42853842	rs2179719	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	42905398	rs60180882	C	T	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.101;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr6	42928461	rs10948059	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=1.432;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr6	42928758	rs2296805	T	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr6	42929839	rs7760250	G	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,25:0.28:88
chr6	42931204	rs4987175	TG	T	3219.73	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:275,140:0.34:415
chr6	42931261	rs2296804	C	G	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:321,186:0.37:507
chr6	42932202	rs1129186	C	T	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.119;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr6	42932242	rs114615852	A	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.628;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr6	42932715	rs2274517	C	T	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.620;QD=4.58;ReadPosRankSum=0.736;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:289,113:0.28:402
chr6	42934500	rs2274514	C	T	3053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.965;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:433,179:0.29:612
chr6	42934620	rs3818554	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:109,45:0.29:154
chr6	42935998	rs9471982	G	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-2.075;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr6	42936545	rs201782052	AG	A	1358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-0.542;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:149,55:0.27:204
chr6	42936900	rs3805953	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr6	42937839	rs114487211	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:103,45:0.30:148
chr6	42941633	rs112436350	A	G	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.271;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr6	42989057	rs9296409	T	C	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	43014298	rs9394939	TT	CC	14157.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr6	43021976	rs34298469	CG	C	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.136;QD=8.02;ReadPosRankSum=-0.067;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr6	43038938	.	TA	T	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.653;QD=4.15;ReadPosRankSum=0.393;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:49,49:0.50:98
chr6	43041618	rs114803978	A	G	6260.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:104,273:0.72:377
chr6	43110055	rs6933124	T	G	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:494,218:0.31:712
chr6	43112267	rs34764696	C	T	3555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=2.839;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:507,218:0.30:725
chr6	43114211	rs60930750	C	CT	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	43128289	rs116421501	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr6	43128434	rs61021888	A	G	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.165;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:163,57:0.26:220
chr6	43152573	rs9472022	A	G	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.021;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:330,127:0.28:457
chr6	43154091	rs941849	C	G	12884.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr6	43167598	rs115576437	C	G	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-2.478;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:189,60:0.24:249
chr6	43168117	rs9462875	A	G	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:134,71:0.35:205
chr6	43168378	rs41274932	C	T	1897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.199;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=2.116;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.756;QD=3.80;ReadPosRankSum=0.626;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:378,122:0.24:500
chr6	43172150	rs61739506	G	A	2229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=2.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.787;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:371,143:0.28:514
chr6	43182657	rs1214714	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	43184132	rs2273709	A	C	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.460;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.063;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:308,98:0.24:406
chr6	43188716	rs2756178	A	T	8011.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr6	43188830	rs114210279	CC	TG	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;JOINED;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr6	43188940	rs6917902	C	T	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:171,89:0.34:260
chr6	43189100	rs140078520	G	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.105;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=2.021;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr6	43189375	rs6918623	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,40:0.36:112
chr6	43192269	rs6458328	T	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	43193318	rs115842765	G	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=1.779;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr6	43193318	.	GTA	TTG	418	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=10;NR=3;PP=418;QD=36.2667596048;SC=GCAGGAAAGGGTATTACTGAG;SbPval=0.65;Source=Platypus;TC=40;TCF=30;TCR=10;TR=13;WE=43193328;WS=43193308;set=Platypus	GT:AD:AF:DP	0/1:27,13:0.33:40
chr6	43193320	rs114326925	A	G	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=2.145;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr6	43220359	rs35235406	C	CA	751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.034;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.699;QD=9.06;ReadPosRankSum=0.231;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:30,53:0.64:83
chr6	43221264	rs12664472	T	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr6	43222526	rs11318521	GT	G	7131.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	43225408	rs7769668	G	A	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	43230716	rs61729330	C	T	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.404;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:283,83:0.23:366
chr6	43230970	rs3800294	G	C	12790.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr6	43231163	rs10948069	T	C	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	43250387	rs6936397	G	C	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	43251637	rs61735048	G	A	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:313,139:0.31:452
chr6	43251912	rs3800297	A	G	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	43252029	rs3800298	T	C	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.26;QD=26.03;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr6	43252107	rs11269387	G	GGAGGGGCTTCTCCAGAACCAAGGT	2905.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	43252141	rs7763131	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	43266765	rs70953678	G	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr6	43267301	rs41275948	C	A	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.221;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:290,111:0.28:401
chr6	43267831	rs70953680	G	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr6	43270097	rs2651184	T	C	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	43270326	rs2841646	A	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	43304798	rs74725336	T	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr6	43305790	rs34761878	T	C	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:240,100:0.29:340
chr6	43306346	rs1459675	A	G	20908.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	1/1:2,755:1.00:757
chr6	43309955	rs112501444	TG	T	1184.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:99,47:0.32:146
chr6	43323917	rs41281796	G	A	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr6	43325269	rs150513185	G	A	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:224,101:0.31:325
chr6	43332905	rs57347041	T	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr6	43333285	rs73416716	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr6	43336771	rs9381238	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	43399837	rs700008	A	G	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	43400342	rs45535935	T	G	10872.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:187,450:0.71:637
chr6	43412082	rs41281802	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr6	43412865	rs2125739	T	C	14164.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:1,522:1.00:523
chr6	43412935	rs2125740	T	C	3112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-1.198;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:508,203:0.29:711
chr6	43414216	rs1214746	T	C	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	43414234	rs1214747	G	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	43417852	rs7752305	G	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr6	43418691	rs1214748	G	A	9783.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr6	43418733	rs1214749	G	A	10506.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr6	43421990	rs200997419	AAG	A	1444.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr6	43466599	rs80091464	C	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr6	43468355	rs2277123	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr6	43469445	rs371295342	GACACAC	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr6	43471613	rs76650718	G	A	3800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=826;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.115;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:583,235:0.29:818
chr6	43473494	rs77244184	C	T	1250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=4.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.394;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:250,85:0.25:335
chr6	43475474	rs6924483	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:129,58:0.31:187
chr6	43480307	rs2231770	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr6	43480825	rs41281816	C	T	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=1.744;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:142,51:0.26:193
chr6	43487363	rs9472069	A	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:85,37:0.30:122
chr6	43487676	rs114815047	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,35:0.36:97
chr6	43492542	.	T	TCCTTCCCCCATG	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=5.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=-0.091;SOR=1.790;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr6	43494319	rs1150800	A	G	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	43496662	rs1106841	A	C	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-1.097;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr6	43498364	rs57104310	GT	G	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=13.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.530;SOR=0.021;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr6	43498673	rs7769795	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr6	43499177	rs41281820	T	C	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:63,29:0.32:92
chr6	43501580	rs11404474	C	CA	1111.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	43501833	rs7767973	T	C	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=1.379;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:156,46:0.23:202
chr6	43516228	rs6928412	T	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-2.046;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:53,24:0.31:77
chr6	43521263	.	TAC	T	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.151;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:118,25:0.17:143
chr6	43533305	rs11362688	TA	T	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.551;SOR=1.564;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr6	43546275	.	T	C	259	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=4;MGOF=17;MMLQ=19;MQ=59.22;NF=8;NR=18;PP=259;QD=11.2988927903;SC=AAAAAAAAAGTGTCATGGTCA;SbPval=0.77;Source=Platypus;TC=75;TCF=28;TCR=47;TR=26;WE=43546283;WS=43546251;set=Platypus	GT:AD:AF:DP	1/0:49,26:0.35:75
chr6	43582091	rs6941583	A	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:116,75:0.39:191
chr6	43590408	rs16896609	G	A	3498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.339;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:605,225:0.27:830
chr6	43594565	.	C	CA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=8.439;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-0.313;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:106,21:0.17:127
chr6	43618147	rs35110984	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr6	43648988	rs2236346	A	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:79,49:0.38:128
chr6	43738350	rs2010963	C	G	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:125,64:0.34:189
chr6	43745107	rs3024997	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr6	43745577	rs3024998	C	T	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:22,82:0.79:104
chr6	43746169	rs3025000	C	T	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:43,88:0.67:131
chr6	43747371	rs3025007	C	T	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:187,86:0.32:273
chr6	43747450	rs3025009	G	A	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:349,146:0.29:495
chr6	43748643	rs3025052	T	C	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	43969837	rs77246040	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:89,33:0.27:122
chr6	43970827	rs2295334	G	A	2058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.229;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:314,116:0.27:430
chr6	44081510	rs700006	C	T	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:24,93:0.79:117
chr6	44081718	rs6883	G	A	6033.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:91,261:0.74:352
chr6	44081987	rs4711767	T	C	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr6	44102572	rs3841315	C	CT	13812.73	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:155,390:0.72:545
chr6	44107200	rs11967633	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:164,71:0.30:235
chr6	44107365	rs41282654	G	A	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr6	44108150	rs7738970	T	C	8246.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr6	44108937	rs4628095	G	A	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:34,83:0.71:117
chr6	44116785	rs35937558	T	TC	2617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.413;QD=7.42;ReadPosRankSum=0.943;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:246,107:0.30:353
chr6	44117727	rs4711768	A	G	8930.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:141,393:0.74:534
chr6	44121270	rs1041523	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr6	44122416	rs10537719	TCTC	T	834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.339;QD=12.84;ReadPosRankSum=2.020;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:41,24:0.37:65
chr6	44134581	rs914503	C	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.766;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:162,52:0.24:214
chr6	44136899	rs4711770	A	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr6	44136911	rs112447145	T	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr6	44140275	rs1418487	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.321;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr6	44140320	rs1418488	C	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr6	44144092	rs58342131	C	T	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.033;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=5.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.401;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:243,92:0.27:335
chr6	44144743	rs57294700	A	AG	6473.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:99,231:0.70:330
chr6	44149153	rs149157640	CCACA	C,CCA	537.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.60;QD=33.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:0,6,10:0.38,0.62:16
chr6	44149204	.	ACT	A	375	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=4;MGOF=72;MMLQ=23;MQ=52.84;NF=1;NR=7;PP=375;QD=47.75;SC=ACACACACACACTCACATACA;SbPval=0.65;Source=Platypus;TC=8;TCF=1;TCR=7;TR=8;WE=44149219;WS=44149194;set=Platypus	GT:AD:AF:DP	1/0:0,8:1.00:8
chr6	44149206	.	T	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=1.282;QD=14.79;ReadPosRankSum=0.598;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	44149210	.	A	T	88.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=1.282;QD=14.79;ReadPosRankSum=-1.960;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	44149210	.	AT	TC	82	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=4;MGOF=72;MMLQ=26;MQ=54.33;NF=2;NR=2;PP=82;QD=33.8669687156;SC=ACACACTCACATACAGACACA;SbPval=0.46;Source=Platypus;TC=11;TCF=4;TCR=7;TR=4;WE=44149219;WS=44149194;set=Platypus	GT:AD:AF:DP	1/0:7,4:0.36:11
chr6	44149211	.	T	C	88.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=1.282;QD=14.79;ReadPosRankSum=-1.960;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	44185254	rs3734701	T	C	12264.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.30;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr6	44185254	.	TGCCTGCTGCT	CGCCTGCTGCA,CGCCTGCTGCT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=126,166;NR=92,119;PP=2944,533;QD=20;SC=GCTGCTGTCCTGCCTGCTGCT;SbPval=0.52;Source=Platypus;TC=285;TCF=166;TCR=119;TR=218,285;WE=44185272;WS=44185244;set=Platypus	GT:AF:DP	0/1:0.76:285
chr6	44185264	rs79241016	T	A	5995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.56;ReadPosRankSum=0.254;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:73,250:0.77:323
chr6	44185522	rs57595790	TC	GA	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.639;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=1.224;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:131,50:0.28:181
chr6	44216544	rs112518852	GT	G	9016.73	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:33,463:0.93:496
chr6	44217374	rs34083426	T	G	9303.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:150,378:0.72:528
chr6	44218120	rs13296	A	G	10377.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr6	44219394	.	A	G	1971.77	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:44,87:0.66:131
chr6	44220076	rs504697	T	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	44221142	rs34776515	C	T	5286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.648;QD=8.98;ReadPosRankSum=0.993;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:430,159:0.27:589
chr6	44221145	rs148703092	GGAGTTTGT	G	5241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.146;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.678;QD=8.78;ReadPosRankSum=1.003;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:440,157:0.26:597
chr6	44222161	rs35131506	C	CTG	2289.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	44224924	rs575034	C	A	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	44224991	rs520639	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.18;ReadPosRankSum=-0.637;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	44227751	rs12211448	C	A	3438.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:100,155:0.61:255
chr6	44228162	rs2233437	G	A	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:63,128:0.67:191
chr6	44240193	rs571770	C	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	44240559	rs524533	C	T	14400.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr6	44243559	rs3734710	A	G	8295.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr6	44245930	rs325018	C	T	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	44246049	rs325017	A	G	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	44247951	rs484757	T	G	15157.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr6	44250165	rs516582	A	G	9818.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr6	44253617	rs324142	C	T	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.21;SOR=3.564;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	44253749	rs324143	A	G	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	44255459	rs324146	G	A	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr6	44268135	rs325009	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	44268371	rs325008	T	C	8088.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr6	44269023	rs325007	T	C	22326.77	.	AC=2;AF=1.00;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	1/1:0,845:1.00:845
chr6	44269193	rs498512	C	T	7518.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:2,309:0.99:311
chr6	44269640	rs325006	G	A	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	44269680	rs325005	C	G	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	44269847	rs35783144	T	C	2278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=2.606;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:343,136:0.28:479
chr6	44270365	rs325004	C	G	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr6	44270768	rs325002	G	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	44270936	rs325001	C	T	5698.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:113,242:0.68:355
chr6	44273546	rs324137	A	C	3778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=0.369;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:65,176:0.73:241
chr6	44274797	rs7740535	T	C	11618.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:2,430:1.00:432
chr6	44275011	rs324136	T	C	16983.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr6	44279111	rs9688508	A	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.326;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:100,41:0.29:141
chr6	44279309	rs41282672	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.973;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.761;SOR=1.819;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr6	44280812	rs167772	C	T	6123.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:100,264:0.73:364
chr6	44320548	rs4714783	T	A	8127.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr6	44355423	rs2297333	C	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=1.774;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	44355682	rs34753552	G	A	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	44355699	rs2297331	T	C	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	44357884	rs6908640	T	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	44360680	rs6942323	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	44900253	rs3799986	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr6	44900370	rs76357035	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:32,9:0.22:41
chr6	44921320	rs10948187	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr6	44982446	.	G	A	1742.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:36,72:0.67:108
chr6	44988149	rs1475534	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	45405590	rs77780637	A	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr6	45880311	rs6458477	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr6	45922849	rs3734206	C	T	9942.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr6	46048000	rs1416165	T	C	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:174,91:0.34:265
chr6	46107752	rs7451713	C	G	8783.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:149,359:0.71:508
chr6	46108764	rs111729801	T	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	46129345	rs2235881	G	A	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:52,147:0.74:199
chr6	46135489	rs6926570	T	C	6419.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:127,263:0.67:390
chr6	46135984	rs3806995	G	T	5028.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:93,226:0.71:319
chr6	46293328	rs2277121	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr6	46521602	rs699939	C	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr6	46563817	rs7761731	A	T	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=2.599;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:206,56:0.21:262
chr6	46593321	rs3799869	C	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr6	46621097	rs8427	T	A	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	46623698	rs3757241	T	C	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	46630068	rs9381469	G	A	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	46649231	rs7740677	C	T	10917.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr6	46657057	rs3799277	A	G	7565.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	46661479	rs142413497	G	T	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:41,83:0.67:124
chr6	46661937	rs55724083	CT	C	54.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.180;QD=7.82;ReadPosRankSum=0.180;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	46672215	.	TCACA	T	92.70	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.90;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	46672452	rs148052037	TAATC	T	1824.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr6	46672943	rs1051931	A	G	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	46682079	rs1362931	A	C	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	46683978	rs41361844	T	TA	826.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	46717454	rs7766818	A	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.504;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.033;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr6	46726441	rs9395212	G	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	46761495	rs2274656	G	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr6	46793175	rs6920863	G	A	2312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-1.983;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:373,146:0.28:519
chr6	46794048	rs2297018	C	G	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=2.665;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:116,41:0.26:157
chr6	46797329	rs2274657	G	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr6	46801071	rs2274658	G	T	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-1.996;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:190,63:0.25:253
chr6	46803345	rs12196017	G	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:30,7:0.19:37
chr6	46806809	rs1804211	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.212;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr6	46826508	rs613870	G	A	13350.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr6	46826715	rs572248	T	A	24063.77	.	AC=2;AF=1.00;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	1/1:0,878:1.00:878
chr6	46826844	rs571247	T	C	16909.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:2,634:1.00:636
chr6	46826910	rs611779	G	A	12361.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr6	46827073	rs547499	A	G	8244.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;MQ=59.88;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr6	46827126	rs610856	C	T	8093.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr6	46828670	rs540727	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	46831060	rs476374	C	T	15971.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr6	46832741	rs529201	T	C	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	46832813	rs614826	G	A	13128.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr6	46834685	rs586024	G	A	7968.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=1.260;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr6	46834906	rs5875987	TG	T	3489.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	46836995	rs515866	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	46838659	rs10668775	T	TTG	1345.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	46847501	rs2273265	T	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr6	46851144	.	GC	G	2440.73	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,69:0.66:104
chr6	46856100	rs678312	G	A	7902.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr6	46856263	rs677439	G	A	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:53,127:0.71:180
chr6	46867717	rs220702	C	T	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	46867898	rs3215601	TA	T	959.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:99,40:0.29:139
chr6	46974813	rs1226474	G	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr6	46976812	rs1226475	T	C	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:286,150:0.34:436
chr6	46977277	rs16875406	G	A	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:296,126:0.30:422
chr6	46977458	rs937057	T	C	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:215,88:0.29:303
chr6	46988238	.	C	CAAA	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-1.211;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr6	46989848	rs1226491	C	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.033;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr6	46992024	rs58441248	AT	A	76.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:43,9:0.17:52
chr6	46992058	rs1226489	T	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr6	46996218	rs1226485	C	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.688;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:115,30:0.21:145
chr6	47220903	rs74888202	T	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:63,28:0.31:91
chr6	47445927	rs9349406	T	A	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:5,142:0.97:147
chr6	47512590	rs6916578	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	47522357	rs9473132	G	A	2813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=0.172;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:64,130:0.67:194
chr6	47547070	rs34735056	T	TAA	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-2.153;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,31:0.58:53
chr6	47549883	rs2275446	T	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr6	47563692	rs2039503	C	T	8326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=0.336;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:150,384:0.72:534
chr6	47577064	rs9395287	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr6	47624239	rs1485784	A	G	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:55,153:0.74:208
chr6	47624299	rs9369730	A	G	5427.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:93,247:0.73:340
chr6	47626685	rs6935668	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,62:0.65:95
chr6	47641307	rs1411049	G	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	47645772	rs9369734	G	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	47646842	rs6907125	A	G	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr6	47649222	rs8180544	T	G	7894.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	47649573	rs10807371	CA	TG	12296.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	47649694	rs9381594	A	G	6528.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	47653536	rs9381596	A	G	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	47653629	rs10948375	C	T	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	47653812	rs60074575	TA	T	3197.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	47653851	rs9296570	T	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	47654591	rs10948376	G	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	47654662	rs10485315	A	G	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	47654742	rs9296573	A	T	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr6	47654817	rs1556133	C	A	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	47654831	rs1556132	A	G	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	47654864	rs1556131	T	G	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	47661387	rs9395311	A	G	8395.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr6	47676150	rs9369737	C	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	47678455	rs11356177	CT	C	10269.73	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr6	47678678	rs944056	C	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	47681494	rs6916562	T	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	47682604	rs9369738	A	C	9187.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr6	47684591	rs1360157	G	A	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	47684722	.	G	GA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.204;QD=0.65;ReadPosRankSum=0.063;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr6	47686101	rs6914013	T	C	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	47686300	.	G	A	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.488;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-1.530;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:177,56:0.24:233
chr6	47749728	rs7741473	T	G	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	47754498	rs1329543	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	47754538	rs6900985	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	47847179	rs3799276	A	G	7484.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:114,323:0.74:437
chr6	47847401	rs2068006	A	G	5344.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:110,239:0.68:349
chr6	47847683	rs9367307	A	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr6	49403282	rs8589	T	C	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	49409487	rs9473555	G	C	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=7.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.073;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:124,43:0.26:167
chr6	49409737	rs9473557	T	C	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.967;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:173,67:0.28:240
chr6	49411477	rs7744595	G	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=7.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.068;SOR=1.720;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr6	49411619	rs6458690	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr6	49412275	rs9381786	T	G	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:25,80:0.76:105
chr6	49421241	rs7769646	G	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.774;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr6	49425521	rs2229384	C	T	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	49437853	rs200740164	A	AT	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-0.628;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr6	49439805	rs4267943	G	A	2457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.759;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:343,151:0.31:494
chr6	49440363	rs4348317	C	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.068;SOR=1.927;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr6	49440599	rs7759308	T	A	434.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.68;ReadPosRankSum=2.097;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr6	49459791	rs12175251	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr6	49479750	rs13193063	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr6	49479775	rs1480615	A	T	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	49489397	rs9369905	C	A	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:50,118:0.70:168
chr6	49494241	rs9367359	A	G	12987.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr6	49518914	rs6919674	C	G	10061.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	49573302	rs1058066	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr6	49574531	rs9473621	C	T	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=4.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.242;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:148,47:0.24:195
chr6	49574994	rs9473622	A	G	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.236;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:104,34:0.25:138
chr6	49660418	rs12624	A	C	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:35,92:0.72:127
chr6	49663465	rs2248263	G	A	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:33,71:0.68:104
chr6	49665750	rs575562	A	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=1.588;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr6	49667660	rs140890532	C	T	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-1.222;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:209,78:0.27:287
chr6	49696473	rs488132	G	T	1545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.921;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:364,114:0.24:478
chr6	49700840	rs11343694	GT	G	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.593;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr6	49701523	rs495335	A	G	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:318,144:0.31:462
chr6	49705179	rs3216020	TG	T	1046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.854;QD=4.17;ReadPosRankSum=0.450;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:194,57:0.23:251
chr6	49815873	rs373553362	AT	A	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.107;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:103,51:0.33:154
chr6	49913981	rs7760672	C	T	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:211,85:0.29:296
chr6	49917264	rs9369926	A	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.825;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr6	50681660	rs35537220	AT	A	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.608;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:111,35:0.24:146
chr6	50681817	rs35125047	CT	C	1223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=4.861;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.759;QD=5.88;ReadPosRankSum=-0.252;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:78,130:0.62:208
chr6	50683434	rs148612311	CCTCT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.980;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr6	50712784	rs3765306	A	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-0.850;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr6	50789792	rs36011604	AT	A	4091.73	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:121,231:0.66:352
chr6	50791584	rs71687472	CACAA	C	6117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.969;QD=26.71;ReadPosRankSum=0.750;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:73,156:0.68:229
chr6	50805942	rs2817404	T	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	50811115	rs2857513	A	T	4379.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:64,194:0.75:258
chr6	51483961	rs9381994	T	C	5127.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:73,212:0.74:285
chr6	51491884	rs4715227	T	C	4564.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:104,215:0.67:319
chr6	51492046	rs9474033	T	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr6	51512707	rs2580009	T	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr6	51586771	rs9349593	G	A	15987.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.47;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,508:1.00:508
chr6	51586771	.	GC	AC,AT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=21;MQ=60.0;NF=223,58;NR=270,73;PP=2962,1412;QD=20;SC=TCAGCTTCCTGCAGGCTCCTC;SbPval=0.51;Source=Platypus;TC=495;TCF=223;TCR=272;TR=493,131;WE=51586780;WS=51586761;set=Platypus	GT:AF:DP	0/1:1.00:495
chr6	51586772	rs45451196	C	T	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.591;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:367,138:0.27:505
chr6	51604583	.	CT	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.125;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr6	51611470	rs2397060	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr6	51613177	rs765525	C	T	4817.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:103,205:0.67:308
chr6	51618170	rs1326605	T	G	6638.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	51619808	rs9370049	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr6	51640751	rs3920621	C	G	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr6	51656236	rs7765455	G	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr6	51695570	rs1571083	T	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr6	51695647	rs1571084	A	T	2682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=1.911;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:39,120:0.75:159
chr6	51701052	.	A	G	2805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.059;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=7.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.93;ReadPosRankSum=0.985;SOR=1.810;set=HC	GT:AD:AF:DP	0/1:29,68:0.70:97
chr6	51701058	rs9474104	C	T	2797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.020;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=6.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.90;ReadPosRankSum=1.606;SOR=1.694;set=HC	GT:AD:AF:DP	0/1:33,71:0.68:104
chr6	51732807	rs12210295	C	T	7570.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:191,338:0.64:529
chr6	51875250	rs2435322	A	C	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr6	51890823	rs9296669	G	A	3986.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:89,181:0.67:270
chr6	51891011	rs2499480	T	C	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:43,115:0.73:158
chr6	51913240	rs10948667	G	A	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:36,126:0.78:162
chr6	51914898	rs9395759	T	C	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	51914956	rs9370096	G	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:41,91:0.69:132
chr6	51924774	rs1896976	A	G	8302.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr6	51929966	.	T	TAGAG	153.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.93;ReadPosRankSum=1.036;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	51930886	rs5876252	T	TA	1813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.736;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:48,116:0.71:164
chr6	51935747	rs17576809	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:47,86:0.65:133
chr6	51936846	rs3936986	T	C	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:67,144:0.68:211
chr6	51938242	rs9474140	A	G	2175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.669;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=2.700;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:426,142:0.25:568
chr6	51944847	rs1892274	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr6	51947237	rs9474143	G	A	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:145,83:0.36:228
chr6	51949862	rs9370097	A	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr6	52053771	rs17881747	C	T	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.635;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:63,33:0.34:96
chr6	52131254	rs10807441	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr6	52137313	rs12207056	C	T	4517.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:107,205:0.66:312
chr6	52138226	rs2235714	C	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:20,81:0.80:101
chr6	52138765	rs17246401	GAAC	G	1873.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr6	52141670	rs3765446	A	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr6	52142582	rs13191372	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:22,66:0.75:88
chr6	52144081	rs2073036	T	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr6	52147692	rs2307322	T	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr6	52269151	rs655113	T	C	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:42,84:0.67:126
chr6	52285394	rs12206743	G	C	6940.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:128,294:0.70:422
chr6	52288680	.	GT	G	1456.73	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:33,81:0.71:114
chr6	52355206	rs2273120	T	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	52374319	rs57120044	T	TAC	1711.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr6	52522199	rs73433304	C	T	6019.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:136,269:0.66:405
chr6	52615415	rs6577	T	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.602;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr6	52617731	rs2180314	C	G	8493.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:164,368:0.69:532
chr6	52620013	rs10626189	C	CTT	385.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=24.11;ReadPosRankSum=0.994;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr6	52622755	rs1803684	C	G	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:153,90:0.37:243
chr6	52622814	rs2254050	C	T	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	52657552	rs4715326	C	T	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,38:0.35:109
chr6	52658962	rs1051775	T	C	9905.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:159,433:0.73:592
chr6	52661253	rs70977384	CTATATATATATATATATATA	C	746.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	52662263	rs2397106	C	T	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	52697601	rs55815585	T	G	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:56,104:0.65:160
chr6	52697825	rs4715345	A	C	10435.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=43.48;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr6	52697834	rs4715346	C	A	10010.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;QD=44.89;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr6	52701143	rs2397118	C	T	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	52702324	rs4715350	T	C	19437.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:0,726:1.00:726
chr6	52843131	rs367836	G	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr6	52843477	rs375887	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr6	52847551	rs316133	G	C	4832.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:69,196:0.74:265
chr6	52849146	rs316128	G	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr6	52849481	rs11444456	C	CT	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.363;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr6	52858774	rs45571441	C	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.676;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:140,46:0.25:186
chr6	52858838	rs45504201	G	A	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.380;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:236,91:0.28:327
chr6	52870174	rs2039214	G	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr6	52878637	rs2297211	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,39:0.32:123
chr6	52902852	rs742343	T	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-3.918;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr6	52938468	rs5876299	AT	A	829.79	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:11,55:0.83:66
chr6	52943841	rs35757290	TA	T	1688.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr6	52958479	rs2816350	A	G	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	52958667	rs374719446	GT	G	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-1.250;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:88,25:0.22:113
chr6	52962473	rs9474385	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:62,23:0.27:85
chr6	52963071	rs2876	A	G	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=-0.466;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:37,84:0.69:121
chr6	52996708	rs9349655	C	G	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.02;ReadPosRankSum=0.267;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:19,69:0.78:88
chr6	52999239	rs7764947	T	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,90:0.68:132
chr6	53010182	rs9367511	A	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,58:0.73:79
chr6	53134104	rs3830806	C	CACAG	7798.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	53134164	rs70980834	C	CCTTTT	2592.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:31,65:0.68:96
chr6	53138203	.	TAA	T,TA	1030.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=0.184;SOR=1.071;set=HC	GT:AD:AF:DP	1/2:5,19,39:0.30,0.62:63
chr6	53138260	rs9463895	G	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr6	53140161	rs2294862	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr6	53140928	rs2294864	T	A	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	53152642	rs6458913	G	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr6	53152758	rs6907982	A	G	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:92,122:0.57:214
chr6	53152845	rs3817960	T	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr6	53160383	rs3736732	G	T	10466.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr6	53365019	rs661346	G	C	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:297,132:0.31:429
chr6	53365374	rs2066511	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	53370107	rs661603	T	C	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=1.479;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr6	53370395	rs524553	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:77,36:0.32:113
chr6	53373624	rs3830795	G	GCTCCAC	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=1.061;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr6	53378861	rs11385177	A	AT	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.506;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:63,22:0.26:85
chr6	53379405	rs3736729	A	C	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr6	53385475	rs2100375	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr6	53409451	rs146955698	C	CCCTCCT,CCCTCCTCCT	6019.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=213;set=Intersection	GT:AF:DP	1/2:0.75,0.25:124
chr6	53516876	rs6928338	T	G	9455.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr6	53519062	rs10948758	A	G	17329.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:1,612:1.00:613
chr6	53519605	rs3799260	C	T	6521.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr6	53519857	rs12210809	G	A	9741.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	53520088	rs2038939	T	C	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	53520124	rs2038940	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	53660358	rs4314499	C	T	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:81,152:0.65:233
chr6	53707098	rs4286781	C	T	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	53762092	rs9349688	A	G	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr6	53762293	rs71775183	GA	G	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr6	53764829	rs71558840	T	G	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-1.334;QD=12.07;ReadPosRankSum=1.182;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:18,34:0.65:52
chr6	53784275	.	T	TTAA	1307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-0.243;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:28,71:0.72:99
chr6	53847528	rs9370250	G	A	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	53989526	rs4712056	G	A	5183.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:113,225:0.67:338
chr6	54003184	rs2754780	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	54013765	rs2145755	A	G	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr6	54054686	rs6934690	T	A	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:21,78:0.79:99
chr6	54054837	rs9296739	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr6	54067088	rs67016420	AT	A	2009.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.525;QD=26.10;ReadPosRankSum=-0.495;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:15,62:0.81:77
chr6	54079946	rs74883660	T	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-1.976;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:53,26:0.33:79
chr6	54079968	rs11757700	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:20,55:0.73:75
chr6	54095411	rs2275770	C	G	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.660;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.786;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:99,20:0.17:119
chr6	54095423	rs816384	T	C	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:32,124:0.79:156
chr6	54095524	rs2275769	C	T	1949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=2.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.453;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:370,124:0.25:494
chr6	54121968	rs9367556	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr6	54130829	.	CTT	C	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.982;QD=8.70;ReadPosRankSum=1.200;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr6	54186024	rs2297986	T	C	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:44,140:0.76:184
chr6	54186147	rs1058768	T	C	9170.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr6	54191754	rs75206304	T	C	1516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.000;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:205,83:0.29:288
chr6	54191970	rs1848440	T	A	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr6	54734941	rs7765721	C	A	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:42,120:0.74:162
chr6	54735122	rs1472679	A	G	10000.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:139,417:0.75:556
chr6	54735344	rs16886105	A	G	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=5.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.222;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:218,68:0.24:286
chr6	54792236	rs2746440	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr6	54805688	rs239798	A	C	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:187,91:0.33:278
chr6	54806489	rs9475077	C	A	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:296,144:0.33:440
chr6	55105701	rs9357853	T	C	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	55113347	rs62416818	T	C	1908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.81;ReadPosRankSum=-0.587;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:13,47:0.78:60
chr6	55113350	rs62416819	G	A	1954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.793;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.62;ReadPosRankSum=0.344;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,50:0.76:66
chr6	55113411	rs3122169	C	A	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	55113664	rs9396073	C	T	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:42,95:0.69:137
chr6	55120301	rs9475220	A	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr6	55142337	rs2653349	A	G	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:29,89:0.75:118
chr6	55142458	rs11455646	CT	CTT,C	80.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=17;set=Intersection	GT:AF:DP	0/1:0.62:13
chr6	55196587	rs12199003	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:129,51:0.28:180
chr6	55215079	rs1032767	G	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	55216005	rs870806	G	A	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-1.949;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:162,60:0.27:222
chr6	55264362	rs6936510	T	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	55266625	rs9370418	T	C	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	55266722	rs12529201	C	T	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.305;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	55266796	rs10948913	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr6	55300329	rs12332977	T	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr6	55300347	rs141031166	T	TC	402.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;MQ=60.31;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr6	55300686	rs77744900	G	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr6	55442033	rs147198216	GATAGAAAAA	G	835.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr6	55623942	.	C	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-1.163;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr6	55730212	rs2021803	G	A	9114.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr6	55730332	rs73450209	T	C	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.504;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:170,56:0.25:226
chr6	55739302	rs35124644	T	C	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=8.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.365;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:133,48:0.27:181
chr6	55739553	rs3734444	A	G	10499.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:169,447:0.73:616
chr6	55739711	rs200061411	T	TA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=1.634;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:129,29:0.18:158
chr6	55925801	rs9464337	G	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.400;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:77,30:0.28:107
chr6	55929347	rs2235735	T	C	4648.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	55966418	rs4379279	A	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr6	55988870	rs192244210	G	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr6	56006843	rs2076473	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	56044578	rs2038149	T	C	8143.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:135,341:0.72:476
chr6	56045043	rs2038150	C	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	56327849	rs11758339	C	T	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:184,75:0.29:259
chr6	56334594	rs9349823	A	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr6	56337132	rs34164953	CG	C	314.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr6	56338564	rs2273972	G	T	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr6	56341981	rs2273973	G	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr6	56350339	rs2273974	T	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr6	56358777	rs115951263	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr6	56359034	rs11759493	C	A	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.138;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:113,42:0.27:155
chr6	56365814	rs4283892	A	G	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:36,113:0.76:149
chr6	56374754	rs9296849	C	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr6	56381912	rs4715626	G	A	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:68,147:0.68:215
chr6	56394173	rs9357922	T	C	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr6	56395051	rs6939305	C	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr6	56417282	rs4715630	C	T	6939.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:149,293:0.66:442
chr6	56417545	rs4715631	T	C	8690.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:173,364:0.68:537
chr6	56420538	rs11756977	C	T	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:215,91:0.30:306
chr6	56425284	rs2067543	A	G	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	56425971	rs1884286	A	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	56426931	rs9367689	C	T	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	56427095	rs79573569	C	CTGAGTGTTGAAA	2871.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	56437465	rs1014309	T	C	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:31,106:0.77:137
chr6	56437902	rs2144405	C	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	56459053	rs79670153	T	C	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-2.281;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:97,37:0.28:134
chr6	56462840	rs9370541	G	A	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	56463410	rs4712138	T	C	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	56463595	rs72437619	TAC	T	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr6	56466982	.	GA	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.838;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	56466999	rs9382653	T	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	56467586	rs11751914	G	A	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	56468074	rs79922686	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:99,38:0.28:137
chr6	56468238	rs9370543	G	A	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	56468537	rs9382656	T	C	5021.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	56470471	rs60577627	A	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:175,76:0.30:251
chr6	56470551	rs13194995	T	A	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	56470690	rs13209548	G	A	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	56471402	rs9382658	G	A	9880.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr6	56471995	rs16888055	C	T	8827.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr6	56472288	rs80018189	G	A	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.158;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:154,62:0.29:216
chr6	56472651	rs79468957	C	T	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-2.217;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:353,136:0.28:489
chr6	56473679	rs77337234	A	G	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:272,137:0.33:409
chr6	56475265	rs61263396	T	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,31:0.32:96
chr6	56476182	rs111382742	T	TAAGTA	2221.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	56476262	rs7747060	T	C	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	56476456	rs9396226	T	A	366.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr6	56482704	rs9396228	A	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	56482801	rs6459166	C	G	7356.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	56484758	rs2230862	C	T	11417.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr6	56485486	rs6909714	G	A	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-2.951;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:484,154:0.24:638
chr6	56491892	rs41271876	A	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.673;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr6	56493073	rs41271878	C	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,30:0.31:97
chr6	56496257	rs45553042	G	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr6	56496649	rs10456737	A	C	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:79,137:0.63:216
chr6	56499189	rs6941626	T	C	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.709;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.035;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:201,59:0.23:260
chr6	56501224	.	G	GTA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.037;QD=2.70;ReadPosRankSum=-1.079;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr6	56505063	rs2144407	A	G	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.458;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=2.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.295;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:309,97:0.24:406
chr6	56507135	rs1024195	T	C	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	56507489	rs1024196	A	G	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-2.420;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:407,137:0.25:544
chr6	56510526	rs7760503	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr6	56515787	rs41267673	G	A	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:295,144:0.33:439
chr6	56535650	rs79812261	T	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:69,27:0.28:96
chr6	56557344	rs13205013	G	C	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-1.651;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:208,68:0.25:276
chr6	56557411	rs35637749	G	A	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.158;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:269,86:0.24:355
chr6	56557822	rs34724718	T	C	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:289,143:0.33:432
chr6	56566630	rs13191164	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:45,14:0.24:59
chr6	56569104	rs16888128	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr6	56765342	rs78633225	G	A	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=1.631;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:168,59:0.26:227
chr6	56818706	rs986245	T	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	56873069	rs6925819	T	C	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr6	57037674	rs115224295	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr6	57059497	rs142602241	AAAC	A	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr6	57191021	rs11381745	A	AG	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.601;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr6	57244672	rs5011404	G	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr6	57244734	rs113062534	G	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.337;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:142,25:0.15:167
chr6	57244745	rs78289869	C	T	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.717;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:148,27:0.15:175
chr6	57244780	rs5011403	G	A	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:85,74:0.47:159
chr6	57244830	rs5011402	T	A	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:67,52:0.44:119
chr6	57244893	rs5011401	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr6	57246708	rs6913779	G	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,57:0.43:134
chr6	57246773	rs113849959	T	TAGG	6584.73	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:223,168:0.43:391
chr6	57246785	rs62415470	A	C	7474.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:261,215:0.45:476
chr6	57246815	rs6936571	T	C	6464.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:347,307:0.47:654
chr6	57246884	rs6913546	A	G	8973.77	.	AC=1;AF=0.500;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	0/1:485,444:0.48:929
chr6	57246969	rs4256440	G	A	5063.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:250,230:0.48:480
chr6	57246982	rs4585567	G	T	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:202,184:0.48:386
chr6	57247022	rs4382263	C	T	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:111,84:0.43:195
chr6	57254789	rs2397264	A	G	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:142,133:0.48:275
chr6	57254811	rs941685	A	G	10763.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr6	57254839	rs2397265	T	C	5201.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:331,258:0.44:589
chr6	57254927	rs2397266	A	G	6746.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:376,273:0.42:649
chr6	57254939	rs4994089	G	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.655;QD=0.23;ReadPosRankSum=0.485;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:519,71:0.12:590
chr6	57254950	rs5876554	A	AT	7317.73	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:277,198:0.42:475
chr6	57254955	rs2894842	G	A	6957.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:258,182:0.41:440
chr6	57254986	rs2397267	G	A	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:156,123:0.44:279
chr6	57255001	rs2894843	C	A	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:119,86:0.42:205
chr6	57255015	rs2894844	G	C	2463.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:98,65:0.40:163
chr6	57255016	rs5876555	A	AC	2463.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:96,63:0.40:159
chr6	57255032	rs7769711	C	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:68,47:0.41:115
chr6	57372104	rs2024986	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr6	57372116	rs9382768	T	C	2383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.38;ReadPosRankSum=1.221;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:53,70:0.57:123
chr6	57372126	rs9396314	C	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.125;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-0.546;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:95,48:0.34:143
chr6	57372199	rs9382769	T	C	7823.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:177,327:0.65:504
chr6	57372361	rs9382770	C	A	7153.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:187,299:0.62:486
chr6	57372374	rs68090917	CT	C	2875.73	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:295,115:0.28:410
chr6	57372436	rs9382771	G	C	4004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.30;ReadPosRankSum=-0.881;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:63,125:0.66:188
chr6	57372437	rs79221898	C	T	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=0.810;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:134,53:0.28:187
chr6	57372456	rs35141035	AT	A	701.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-1.203;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr6	57372480	rs79601039	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.613;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr6	57372502	rs9349872	G	A	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=1.031;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:22,30:0.58:52
chr6	57372510	rs77697887	T	G	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.654;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.885;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr6	57372514	rs77868044	T	C	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.788;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.688;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr6	57392963	rs927193	T	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr6	57393029	rs77090024	T	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.645;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr6	57393034	rs75127850	G	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.023;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr6	57393040	rs74756458	A	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=0.345;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr6	57393054	rs75725892	G	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.137;SOR=1.295;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chr6	57393074	rs73752376	A	G	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-1.292;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:88,30:0.25:118
chr6	57393092	rs73752377	T	A	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.584;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:94,30:0.24:124
chr6	57393112	rs11964288	T	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.577;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:137,31:0.18:168
chr6	57393125	rs927192	A	G	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr6	57393199	rs2397502	C	A	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=0.187;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:86,57:0.40:143
chr6	57393216	rs2397503	G	T	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=1.474;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:50,70:0.58:120
chr6	57393222	rs111989160	A	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.623;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:90,22:0.20:112
chr6	57393228	rs112156516	G	A	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.860;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr6	57398028	rs67286646	TG	T	1575.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr6	57398058	rs7771283	C	G	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:111,59:0.35:170
chr6	57398081	rs7753294	T	G	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:126,95:0.43:221
chr6	57398117	rs139574925	T	TA	1847.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:229,85:0.27:314
chr6	57398118	rs147643173	G	T	1853.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.001;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=13.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=1.485;SOR=1.443;set=HC	GT:AD:AF:DP	0/1:231,86:0.27:317
chr6	57398154	rs80081867	T	C	7051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=5.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=-2.369;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:275,188:0.41:463
chr6	57398157	rs9476080	A	G	7356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.301;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=5.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=-2.329;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:283,190:0.40:473
chr6	57398163	rs9476081	A	G	7533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=-3.393;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:297,209:0.41:506
chr6	57398201	rs62398997	T	C	5965.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:381,178:0.32:559
chr6	57398226	rs77436138	T	G	6334.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:356,194:0.35:550
chr6	57398264	rs62398998	A	G	5980.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:272,244:0.47:516
chr6	57398335	rs4715745	A	T	4175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.074;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=4.447;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.838;QD=14.11;ReadPosRankSum=0.862;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:121,175:0.59:296
chr6	57398385	rs11455120	A	AT	434.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:76,36:0.32:112
chr6	57398395	rs78658694	A	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.064;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr6	57398412	rs6937166	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.868;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr6	57415121	rs7741368	G	A	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-3.138;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:185,56:0.23:241
chr6	57415133	rs201212509	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.457;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:265,39:0.13:304
chr6	57415141	rs11346545	TA	T	1977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=4.999;QD=5.56;ReadPosRankSum=-1.594;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:277,79:0.22:356
chr6	57415161	rs493737	T	G	8236.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:168,278:0.62:446
chr6	57415173	rs496135	G	A	1615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.612;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.941;QD=3.05;ReadPosRankSum=1.419;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:410,119:0.22:529
chr6	57415223	rs7741129	A	T	4925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.466;QD=7.34;ReadPosRankSum=0.022;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:513,158:0.24:671
chr6	57415231	rs7761558	T	C	4837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.530;QD=7.26;ReadPosRankSum=0.434;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:513,153:0.23:666
chr6	57415309	rs7741689	G	A,C	6914.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=358;set=Intersection	GT:AF:DP	1/2:0.27,0.61:357
chr6	57415349	rs11412269	G	GA	2502.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:66,93:0.58:159
chr6	57415403	rs11412270	T	TA	646.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr6	57415420	rs9349880	T	C	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.348;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=2.196;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr6	57415425	rs7741460	A	T	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.337;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.39;ReadPosRankSum=0.710;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr6	57433425	rs2397541	C	T	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr6	57433455	rs2151625	C	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=1.834;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:47,43:0.48:90
chr6	57433501	rs201029322	AAAAAAAG	A	2660.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:94,72:0.43:166
chr6	57433525	rs518931	T	G	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=8.488;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.722;QD=6.36;ReadPosRankSum=1.736;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:139,37:0.21:176
chr6	57433544	rs562762	G	A	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.767;QD=6.66;ReadPosRankSum=1.106;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:140,42:0.23:182
chr6	57433616	rs518037	T	C	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr6	57433669	rs4464799	A	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr6	57457703	rs111977760	A	AG	463.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr6	57457704	rs5008381	A	T	472.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr6	57457737	rs9476161	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr6	57457779	rs4110759	G	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr6	57457843	rs4110760	T	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.721;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.172;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:118,21:0.15:139
chr6	57457947	rs2397945	A	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=0.989;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chr6	57457960	rs2093718	A	G	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-2.160;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:70,35:0.33:105
chr6	57457973	rs74595165	C	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=1.663;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:62,29:0.32:91
chr6	57457974	rs4598061	T	G	1810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=0.463;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:34,57:0.63:91
chr6	57457995	rs4501418	G	C	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=1.236;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:29,47:0.62:76
chr6	57458001	rs78499845	A	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=0.227;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:42,25:0.37:67
chr6	57458006	rs4120410	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.589;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=10.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.756;SOR=2.904;set=HC	GT:AD:AF:DP	0/1:55,8:0.13:63
chr6	57458044	rs4351265	A	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.671;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.036;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr6	57467084	rs9885913	A	G	3614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.236;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:286,105:0.27:391
chr6	57467093	rs9885916	A	G	3782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.976;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=4.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-0.457;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:314,118:0.27:432
chr6	57467100	rs4535533	G	C	9639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=0.702;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:174,316:0.64:490
chr6	57467107	rs9885751	C	T	2355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.154;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=4.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.965;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:401,135:0.25:536
chr6	57467175	rs4406234	A	G	7099.77	.	AC=1;AF=0.500;AN=2;DB;DP=968;set=Intersection	GT:AD:AF:DP	0/1:596,370:0.38:966
chr6	57467279	rs6459263	T	C	5526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.240;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-1.979;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:508,175:0.26:683
chr6	57467282	rs6459264	T	C	5461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=3.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-1.487;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:491,163:0.25:654
chr6	57467303	rs1022846	A	G	8691.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:122,364:0.75:486
chr6	57467317	rs4637646	G	T	5387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-1.001;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:224,153:0.41:377
chr6	57467323	rs4424069	G	C	5000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=0.091;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:212,134:0.39:346
chr6	57472212	rs9296899	T	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr6	57472255	rs9296900	C	T	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:105,118:0.53:223
chr6	57472299	rs9396358	A	G	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:289,136:0.32:425
chr6	57472315	rs9296901	AG	GA	8788.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;JOINED;set=Intersection	GT:AD:AF:DP	0/1:212,271:0.56:483
chr6	57472344	rs111230027	A	AT	1677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.163;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:482,137:0.22:619
chr6	57472476	rs9382819	T	C	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:288,142:0.33:430
chr6	57472488	rs9382820	C	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:265,120:0.31:385
chr6	57472495	rs62400219	C	G	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.600;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:262,94:0.26:356
chr6	57472533	rs9367767	T	C	3742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.391;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.35;ReadPosRankSum=1.803;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:90,114:0.56:204
chr6	57472534	rs74369127	T	C	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.802;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=2.146;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:138,58:0.30:196
chr6	57498894	rs3846934	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr6	57498944	rs3846935	G	C	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:77,91:0.54:168
chr6	57499042	rs5876654	A	AT	738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.662;QD=5.91;ReadPosRankSum=0.084;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:79,46:0.37:125
chr6	57499171	rs3846936	T	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr6	57512340	rs4364484	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr6	57512352	rs5001077	A	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr6	57512439	rs4294006	T	C	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:224,114:0.34:338
chr6	57512476	rs4307164	G	A	8589.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:242,348:0.59:590
chr6	57512510	rs4294007	T	G	15440.77	.	AC=1;AF=0.500;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	0/1:229,643:0.74:872
chr6	57512529	rs5001076	C	A	3558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.282;ClippingRankSum=0.000;DB;DP=1042;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.638;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:800,240:0.23:1040
chr6	57512565	rs4294008	T	C	19045.77	.	AC=1;AF=0.500;AN=2;DB;DP=1459;set=Intersection	GT:AD:AF:DP	0/1:581,872:0.60:1453
chr6	57512678	rs4398719	G	A	13635.77	.	AC=1;AF=0.500;AN=2;DB;DP=969;set=Intersection	GT:AD:AF:DP	0/1:364,598:0.62:962
chr6	57512711	rs5001484	G	A	5326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.151;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.379;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:201,235:0.54:436
chr6	57512711	.	GTAACCCT	ATAACCCT,CTAACCCA	1010	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=5;HapScore=2;MGOF=24;MMLQ=27;MQ=59.95;NF=63,24;NR=161,81;PP=739,1010;QD=3.4543357703;SC=AGGCAGTTTTGTAACCCTTTT;SbPval=0.48;Source=Platypus;TC=543;TCF=150;TCR=393;TR=224,105;WE=57512726;WS=57512701;set=Platypus	GT:AF:DP	0/1:0.41:543
chr6	57512718	rs5001483	T	A	3328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.769;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=6.59;ReadPosRankSum=1.660;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:396,109:0.22:505
chr6	57512775	rs7773110	T	G	4284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.782;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=22.91;ReadPosRankSum=-0.186;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:77,110:0.59:187
chr6	57512779	rs76296076	G	T	4301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.048;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.575;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=23.77;ReadPosRankSum=-0.499;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:74,107:0.59:181
chr6	57512783	.	T	TGTCACCAAGG	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.204;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.348;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:146,14:0.09:160
chr6	57512785	.	TG	T	91.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.318;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-1.772;SOR=0.329;set=HC	GT:AD:AF:DP	0/1:149,10:0.06:159
chr6	57512787	.	T	TCACCAAGGC	2909.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.620;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=18.65;ReadPosRankSum=1.192;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:81,75:0.48:156
chr6	57512788	.	T	TTA	3184.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.509;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=22.91;ReadPosRankSum=-3.415;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:71,68:0.49:139
chr6	57512792	rs372064495	T	C	2865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.899;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=20.18;ReadPosRankSum=-4.135;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:70,72:0.51:142
chr6	62390916	rs1204114	T	C	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:58,120:0.67:178
chr6	62407067	rs1555167	G	T	5350.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:103,232:0.69:335
chr6	62442604	rs10484690	A	G	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.728;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:344,110:0.24:454
chr6	62611356	rs67450220	ACAAAACG	A	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	62757987	rs9346001	C	T	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:18,48:0.73:66
chr6	62887031	rs9346218	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr6	62887099	rs6921170	C	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr6	63921360	rs10943599	C	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.32;ReadPosRankSum=0.320;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	63921360	.	CA	AG	216	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=24;MQ=60.0;NF=9;NR=1;PP=216;QD=26.9467874862;SC=TATGGGCAGGCAACGCGCTGA;SbPval=0.43;Source=Platypus;TC=18;TCF=17;TCR=1;TR=10;WE=63921369;WS=63921357;set=Platypus	GT:AD:AF:DP	1/0:8,10:0.56:18
chr6	63921361	rs4710420	A	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.12;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	63921442	rs76273486	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr6	63921456	rs79100944	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr6	63921671	rs140761747	T	C	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-0.889;QD=3.32;ReadPosRankSum=1.665;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:127,40:0.24:167
chr6	63990131	rs35039535	T	C	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:355,155:0.30:510
chr6	64289938	rs56188808	AT	A	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.854;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.090;QD=2.73;ReadPosRankSum=-1.153;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:85,51:0.38:136
chr6	64419024	.	CT	C	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=3.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=1.306;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:65,30:0.32:95
chr6	64497934	rs72886371	A	T	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:32,89:0.74:121
chr6	65016977	rs35395170	TGA	T	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr6	65016998	rs149568304	G	T	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=0.949;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:36,28:0.44:64
chr6	65098515	rs36133910	T	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.065;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr6	65098768	rs587278	A	G	4447.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:48,182:0.79:230
chr6	65149185	rs9353806	T	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.187;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr6	65301504	rs624851	A	G	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr6	65302915	rs11331907	GA	G	622.79	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:4,35:0.90:39
chr6	65596759	rs7743515	G	A	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	65611814	rs57706332	T	C	33.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.51;MQRankSum=0.431;QD=11.26;ReadPosRankSum=-0.431;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr6	65611952	rs59518422	T	TATTA	2388.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	65622463	rs9294631	A	G	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.879;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:348,104:0.23:452
chr6	65622662	rs9445437	G	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr6	65655883	rs9453115	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr6	65767633	rs142590049	G	GA	949.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.823;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:45,54:0.55:99
chr6	65767634	rs45628235	G	A	1583.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-0.570;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:43,58:0.57:101
chr6	66005740	rs35045551	G	GA	4153.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:16,202:0.93:218
chr6	66005888	rs9342464	C	T	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	66005970	rs9345601	G	A	6611.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	66042231	rs12207746	T	G	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.805;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.179;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:113,27:0.19:140
chr6	66045077	rs1502965	C	T	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	66045118	rs1502964	T	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	66053835	rs1502963	T	G	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	66063513	rs1936439	G	A	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr6	69646626	rs62416451	G	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr6	69666183	.	T	TTATA	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.000;QD=27.32;ReadPosRankSum=1.488;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr6	69666195	rs28734080	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;QD=30.95;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	69666684	rs1932618	A	G	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	69666747	rs3215965	GA	G	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.230;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.684;QD=2.22;ReadPosRankSum=1.793;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr6	69684850	rs2275209	T	G	5457.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:89,235:0.73:324
chr6	69724069	rs1336655	G	A	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-2.140;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr6	69728522	rs2785573	C	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	69759148	rs618372	A	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	69773007	rs62416807	A	G	5103.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:77,207:0.73:284
chr6	69785765	rs3757050	C	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr6	69786046	rs35445308	G	GA	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr6	69943418	rs3215840	A	AG	6851.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	70040500	.	G	GA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=3.299;QD=1.35;ReadPosRankSum=-0.580;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr6	70071173	rs913543	G	A	8228.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:182,353:0.66:535
chr6	70386320	rs3214021	C	T	8046.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr6	70407465	rs12648	A	T	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	70411157	rs2445969	G	A	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	70423739	rs2305837	A	G	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	70447993	rs45559535	G	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	70448033	rs12661224	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	70490511	rs9346353	A	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	70490528	rs9346354	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	70500451	rs2305838	C	A	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	70500463	rs2305839	T	G	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	70744264	rs7764390	G	C	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:73,187:0.72:260
chr6	70778297	rs7349861	G	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:50,72:0.59:122
chr6	70778378	rs2224513	GC	CT	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;JOINED;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr6	70812123	rs7772672	A	G	7596.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr6	70812273	rs11759810	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr6	70852493	rs9342783	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	70852607	rs3831024	C	CT	986.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr6	70852841	rs2296013	A	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	70854183	rs9364074	A	G	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.233;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:44,68:0.61:112
chr6	70854208	rs58591338	CAG	C	2833.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:58,73:0.56:131
chr6	70854924	rs3841703	A	AT	661.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr6	70856536	rs7762409	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr6	70859487	rs2346211	A	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr6	70861135	rs3818327	T	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr6	70866421	rs3736843	T	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr6	70866609	rs2229799	C	T	1696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=0.614;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:32,77:0.71:109
chr6	70873331	rs2296010	G	A	3316.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:68,147:0.68:215
chr6	70875976	rs802174	T	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:19,61:0.76:80
chr6	70876046	rs802175	T	C	587.78	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr6	70877980	rs1464159	G	A	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.631;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr6	70894909	rs2296005	A	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr6	70897698	rs3749913	A	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr6	70909252	rs5877242	AT	A	266.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr6	70909763	rs3806064	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=1.190;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr6	70909779	rs3806065	T	C	255.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.63;ReadPosRankSum=-0.471;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr6	70916830	rs3215860	AT	A	1155.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:31,67:0.68:98
chr6	70916888	rs1200576	A	C	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	70916998	rs1736	G	A	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:44,118:0.73:162
chr6	70926898	rs1200569	G	A	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	70944123	rs12197487	G	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr6	70944442	rs10945205	G	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:44,88:0.67:132
chr6	70944465	rs12191701	A	G	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	70948841	.	C	CA	373.37	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr6	70949079	rs13216129	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr6	70949107	rs45464198	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr6	70950281	rs71767894	AAT	A	1056.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.44;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	70951103	rs13202029	A	G	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.048;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:358,145:0.29:503
chr6	70961833	rs1135056	T	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	70962039	rs2274584	C	T	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=-0.931;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:37,83:0.69:120
chr6	70962044	rs519068	A	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.53;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	70962164	rs9446215	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	70963156	rs701690	T	G	12925.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=-0.576;SOR=0.226;set=HC	GT:AD:AF:DP	1/1:1,492:1.00:493
chr6	70963232	rs701689	A	G	7058.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr6	70963279	rs701688	T	C	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	70964745	rs13219431	G	T	2903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=1.033;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:444,178:0.29:622
chr6	70965125	rs633762	A	C	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	70966421	rs34557832	C	CA	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.540;QD=2.62;ReadPosRankSum=0.070;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:132,48:0.27:180
chr6	70970251	rs34147259	C	CA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.076;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr6	70970299	rs2024730	C	T	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	70970501	rs12210870	A	G	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,66:0.73:91
chr6	70972814	rs12194091	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr6	70973152	rs11760185	A	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr6	70976303	rs12195310	A	T	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:29,83:0.74:112
chr6	70976538	rs883708	A	G	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:247,135:0.35:382
chr6	70978397	rs10755539	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr6	70979125	rs551470	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	70979193	rs550675	C	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	70979324	rs6935778	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.030;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr6	70980247	rs2296930	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr6	70983644	rs151025983	TAATA	T	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.484;QD=10.62;ReadPosRankSum=-1.000;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr6	70984436	rs592121	A	G	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.088;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:282,53:0.16:335
chr6	70984562	rs603304	TG	CA	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.265;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.343;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=-0.901;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr6	70989703	rs3806099	A	G	1724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.427;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:381,120:0.24:501
chr6	70990470	rs7764822	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr6	71190687	rs61741206	G	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=2.459;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:119,42:0.26:161
chr6	71236216	rs7740873	C	T	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.450;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:311,122:0.28:433
chr6	71238105	rs2747701	A	G	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:53,120:0.69:173
chr6	71243030	rs148255568	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr6	71243352	rs9283835	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr6	71289189	rs1048886	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:83,43:0.34:126
chr6	71298388	rs73488105	T	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.011;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:179,69:0.28:248
chr6	71482975	rs1413353	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr6	71547369	rs11431598	C	CT	62	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.89;ReadPosRankSum=-1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr6	71547371	rs12199707	C	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.43;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	71568841	rs3734372	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr6	71568935	rs3734371	A	G	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:51,96:0.65:147
chr6	71569090	rs576516	T	C	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	71665473	rs9455275	A	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr6	71665986	rs1574490	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr6	71666146	rs1320315	T	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr6	71998778	rs112585190	T	C	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:67,174:0.72:241
chr6	72006512	rs2273888	T	C	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:73,114:0.61:187
chr6	72010963	rs9346458	G	A	3019.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:38,115:0.75:153
chr6	72084666	.	CATATATAAAT	C	223.79	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.26;QD=37.30;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	72091267	rs5877279	T	TTA	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr6	72836421	rs2463696	A	C	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	72836464	.	TAAA	T	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-1.186;QD=11.45;ReadPosRankSum=1.028;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr6	72858416	rs151080929	GTT	G,GT	6204.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.184;QD=23.41;ReadPosRankSum=1.848;SOR=0.714;set=HC	GT:AD:AF:DP	1/2:3,213,49:0.80,0.18:265
chr6	72889472	rs2249021	A	G	6345.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:150,271:0.64:421
chr6	72889711	rs17725666	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr6	72892257	rs2463730	A	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	72892383	rs114505309	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.231;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.530;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:78,23:0.23:101
chr6	72945492	rs2807519	C	T	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:85,187:0.69:272
chr6	72945603	rs138366781	A	ATTTTC	1035.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr6	72947744	rs78062087	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr6	72947774	rs2807525	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr6	72962352	rs9351902	A	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr6	72968609	rs6923891	C	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr6	72970271	rs118082397	T	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:138,56:0.29:194
chr6	72984277	rs4504440	G	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	73102631	rs117996657	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr6	73108872	rs67994138	AAG	A	723.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr6	73332040	rs3734212	C	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	73516397	rs9446758	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	73821239	rs2000205	T	C	6329.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	73830423	rs1891404	A	G	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	73952058	rs12210517	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr6	73952103	rs6453660	A	C	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=1.645;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:95,38:0.29:133
chr6	73952109	rs76146370	C	A	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=3.057;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr6	73952112	rs79256439	GG	TA	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=3.237;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:113,38:0.25:151
chr6	73952118	rs6453661	A	G	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=2.723;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:128,41:0.24:169
chr6	74019338	rs16883571	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr6	74019376	rs16883573	T	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,36:0.35:104
chr6	74072681	rs9446890	G	C	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.906;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:113,38:0.25:151
chr6	74073531	rs561930	C	G	5984.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:130,263:0.67:393
chr6	74079024	rs496530	A	G	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:104,173:0.62:277
chr6	74079041	rs497243	A	C	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr6	74104557	rs558198	C	G	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:50,119:0.70:169
chr6	74111524	rs60478350	CA	C	355.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.541;QD=6.58;ReadPosRankSum=-1.895;SOR=0.133;set=HC	GT:AD:AF:DP	0/1:15,39:0.72:54
chr6	74115935	rs57549301	C	CGG	1787.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	74119084	rs4708053	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	74125875	rs311686	A	G	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:40,93:0.70:133
chr6	74125888	rs311685	A	G	4189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.69;ReadPosRankSum=-0.767;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:41,116:0.74:157
chr6	74126084	rs311684	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr6	74134849	rs311679	T	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr6	74135016	rs311678	C	T	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:30,78:0.72:108
chr6	74155346	rs610913	G	T	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	74155491	rs2985419	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	74161503	rs9446904	A	G	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr6	74161801	rs9352000	G	T	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr6	74171467	rs1713862	C	G	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	74183444	rs11417913	C	CT	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=2.556;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr6	74189574	rs7766570	G	A	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr6	74201826	rs200573083	CAA	C	551.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.27;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr6	74228006	rs1874229	A	G	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	74228049	rs1874230	A	G	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	74229258	rs2073466	G	T	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	74229405	rs4708060	C	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	74310231	rs11349241	CT	C	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.600;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chr6	74320306	rs4708065	C	T	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-2.145;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:116,42:0.27:158
chr6	74320391	rs1691343	T	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr6	74325257	rs628038	T	C	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.354;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=13.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-1.289;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr6	74348328	rs3757111	C	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.081;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr6	74466377	rs6453696	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:103,53:0.34:156
chr6	74468860	rs7774119	C	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr6	74481076	rs4706554	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr6	74490836	rs7742435	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr6	74490863	rs7762433	T	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	74491138	rs9447019	T	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-2.650;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr6	74491384	rs111578012	CATATTTTTGAA	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.643;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr6	74492618	rs2047670	G	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	74493432	rs10455097	A	C	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.182;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.150;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:159,42:0.21:201
chr6	74493537	rs138465270	C	T	5804.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:67,261:0.80:328
chr6	74493615	rs11301365	AT	A	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=1.172;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:109,45:0.29:154
chr6	74495257	rs6453700	A	G	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.482;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:214,93:0.30:307
chr6	74497009	rs2351528	A	G	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.332;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=6.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.366;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:150,51:0.25:201
chr6	74497152	rs5023688	G	A	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.685;QD=3.80;ReadPosRankSum=-1.255;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:208,74:0.26:282
chr6	74497237	rs35066559	G	GT	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr6	74498432	rs144408661	TAAG	T	260.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	74502210	rs12662725	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr6	74521787	rs1501192	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:53,19:0.26:72
chr6	74521947	rs2917862	C	T	4748.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:126,213:0.63:339
chr6	74528293	rs3005506	A	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr6	74530416	rs11753946	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:110,48:0.30:158
chr6	74530421	rs3005537	A	G	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:47,108:0.70:155
chr6	74533192	rs2917887	T	G	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	75795122	rs112607771	G	GCA,GCACA	4130.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=131;set=Intersection	GT:AF:DP	1/2:0.18,0.79:111
chr6	75796364	.	GTATA	G,GTA	991.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.78;MQRankSum=0.436;QD=30.05;ReadPosRankSum=-1.662;SOR=5.486;set=HC	GT:AD:AF:DP	1/2:1,10,22:0.30,0.67:33
chr6	75797302	rs970547	C	T	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	75798716	rs201853945	C	CA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.022;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr6	75798722	rs672648	C	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:3,53:0.95:56
chr6	75811880	rs556674	G	A	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	75823564	.	C	A	94.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr6	75830974	rs499018	G	C	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.631;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:195,62:0.24:257
chr6	75833876	rs240722	C	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:132,58:0.31:190
chr6	75834717	rs192587811	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr6	75841722	rs594012	A	T	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	75843845	rs1332778	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr6	75844700	rs1332019	C	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr6	75890933	rs34433354	T	TA	409.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.870;QD=12.06;ReadPosRankSum=-0.102;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr6	75893457	rs36085827	TA	T	2088.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:4,102:0.96:106
chr6	75901292	rs743003	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	75904455	rs240433	A	T	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	75950109	rs56897555	T	TA	1037.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.652;QD=10.27;ReadPosRankSum=0.139;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:31,70:0.69:101
chr6	75951719	rs240419	A	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	75966269	rs418485	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	75968720	rs147523	G	A	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	75977591	rs240395	T	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	75994151	rs240374	A	G	6302.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:105,265:0.72:370
chr6	76022090	rs9343281	G	C	5348.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:94,229:0.71:323
chr6	76063133	rs6913979	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	76124792	rs2808201	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:53,17:0.24:70
chr6	76138146	rs5877455	C	CAG	1466.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:65,41:0.39:106
chr6	76333486	rs655471	G	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	76357426	rs9352231	C	T	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:29,104:0.78:133
chr6	76357657	rs613562	T	A	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:13,71:0.85:84
chr6	76369054	rs507662	A	G	8011.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	76385511	rs2842535	A	G	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-2.260;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:228,83:0.27:311
chr6	76386712	rs35745959	GT	G	130.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	76538403	rs1280052	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,28:0.34:83
chr6	76545684	rs12210963	T	C	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=0.111;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:33,74:0.69:107
chr6	76550237	rs12216518	A	G	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr6	76550839	.	G	GT	164.73	.	AC=1;AF=0.500;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	76554593	rs7760587	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	76558358	rs9350601	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr6	76566734	rs3798439	T	G	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	76576527	rs6453845	G	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	76583113	rs9443195	T	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr6	76595634	rs13211391	C	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	76604573	rs3798429	T	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr6	76604797	rs3798427	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.88;ReadPosRankSum=-0.766;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr6	76607983	rs720862	T	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr6	76617511	.	A	ATGTG	1044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=2.088;QD=21.32;ReadPosRankSum=0.883;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr6	76640803	rs10943299	G	A	7310.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	76728583	rs377755519	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.192;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr6	76782049	rs1320537	C	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	78171941	rs6297	C	T	6148.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	79424433	rs9352613	A	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=1.455;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr6	79577644	rs9350789	A	C	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	79595167	rs146020132	A	ACTTAT	4325.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	79612800	rs9352675	G	A	19231.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,720:1.00:720
chr6	79657391	rs1984195	G	A	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	79664440	rs9443632	T	C	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	79664748	rs10455356	T	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	79665210	rs7753358	T	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	79679577	rs7742431	A	G	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	79695029	rs1890229	C	T	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	79707923	rs11752126	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:76,30:0.28:106
chr6	79708000	rs7747479	A	C	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr6	79752792	rs9343863	T	C	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	79912189	rs2236543	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr6	79913379	rs67281239	GA	G	447.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=12.44;ReadPosRankSum=-0.511;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr6	79918309	rs9341761	G	A	9916.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr6	79944096	rs3076135	C	CAG	2218.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	79944355	rs9361504	T	G	9600.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr6	80196848	rs1875845	C	T	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.126;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:250,89:0.26:339
chr6	80203253	rs9443675	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.462;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr6	80222804	rs11757993	G	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr6	80228535	rs34068461	T	G	2913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.554;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:289,165:0.36:454
chr6	80228541	rs2655655	A	G	14518.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr6	80228673	rs2803195	T	C	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	80341317	rs139243643	A	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-1.824;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	80341320	rs6926093	CG	GC	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	80382863	rs1883877	G	A	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=18.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-1.409;SOR=0.053;set=HC	GT:AD:AF:DP	0/1:28,57:0.67:85
chr6	80382916	rs1883878	G	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	80513565	rs149560703	G	GCTCTCTGATATGCCATC	2522.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	80513740	rs45512496	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr6	80517204	rs6915721	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr6	80580038	rs9361569	T	G	8861.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	80631539	rs700483	T	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	80657086	rs62407622	C	G	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr6	80715838	rs240226	T	G	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	80720487	.	GCAT	G,GTACAT	1569.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=35;set=Intersection	GT:AF:DP	1/1:1.00:34
chr6	80720491	rs199573945	T	TAAAGA	1569.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	80720733	rs151587	G	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	80720742	rs239556	A	T	366.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.85;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	80721045	rs239558	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	80722857	rs239562	C	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	80723198	rs239563	T	C	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	80723229	rs17174951	C	A	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	80724312	rs239566	A	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	80724462	rs239567	C	T	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	80732242	rs17175251	G	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	80741243	rs1801465	A	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	80741328	rs239584	G	A	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	80741418	rs239585	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	80747582	rs142594332	TATA	T	303.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	80749972	rs1801460	A	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	80750290	rs608962	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	80751780	rs652752	G	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	80751942	rs17254634	G	A	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	80752094	rs17176133	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	80774236	rs7771228	C	T	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	80774410	rs62406016	C	T	10488.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr6	80775487	rs4642425	T	A	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	80777608	rs3967160	G	A	6519.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr6	80878508	.	A	AAGGGAGGGAGGGAGGG	1529.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=61.19;SOR=6.518;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	80881123	rs140373763	A	G	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	80881177	.	A	G	122.90	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	80910571	rs9688535	G	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	80910622	rs374325532	CT	C	472.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr6	80912746	rs3828753	C	T	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	81053642	rs926733	G	A	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	82883238	rs197245	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr6	82910247	rs4706938	C	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr6	82912153	rs7771978	T	G	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.610;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=2.270;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr6	82924645	rs6912968	A	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr6	82930437	.	GA	G	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=1.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=0.442;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:231,48:0.17:279
chr6	82944056	.	A	AT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=1.324;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr6	83075914	rs700494	G	A	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	83602583	rs4706975	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr6	83666936	rs293531	T	C	2937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.80;ReadPosRankSum=-0.708;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:29,73:0.72:102
chr6	83666943	rs293532	G	T	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=6.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.26;ReadPosRankSum=-0.572;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:32,80:0.71:112
chr6	83733785	rs4235816	C	T	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	83752057	rs4612135	C	G	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	83754094	rs4455637	T	C	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	83754481	rs2027282	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	83775201	rs6915334	C	G	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	83822985	rs1925782	G	A	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr6	83828724	rs2148010	G	A	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	83933376	.	C	G	769.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr6	83949261	rs1180230	T	C	4647.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:84,204:0.71:288
chr6	84055783	rs12215595	A	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr6	84061753	.	T	C	67	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=28;MQ=59.69;NF=5;NR=2;PP=67;QD=14.5387446496;SC=AAGAAAAAATTTGCTATAGTG;SbPval=0.62;Source=Platypus;TC=25;TCF=18;TCR=7;TR=7;WE=84061761;WS=84061743;set=Platypus	GT:AD:AF:DP	1/0:18,7:0.28:25
chr6	84108065	rs4706990	A	T	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:37,117:0.76:154
chr6	84140772	rs28372716	TGGC	T	598.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	84233831	rs504593	G	A	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.015;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:203,69:0.25:272
chr6	84284664	rs6941004	G	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.439;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr6	84284880	rs2022269	T	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.489;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:159,43:0.21:202
chr6	84290087	rs147891842	TGA	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.397;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr6	84290137	.	TAAAGA	T	457.73	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr6	84292139	rs1033653	T	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr6	84300997	rs2273363	A	G	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.955;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:197,71:0.26:268
chr6	84303342	rs1033655	T	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:182,102:0.36:284
chr6	84350654	rs217325	C	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.71;ReadPosRankSum=0.301;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	84350664	rs13192201	A	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.84;ReadPosRankSum=-0.563;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	84366385	rs3037027	C	CAAG	1640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-0.377;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:126,48:0.28:174
chr6	84368819	rs11368249	TA	T	540.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.575;QD=2.30;ReadPosRankSum=0.300;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:166,69:0.29:235
chr6	84375103	rs13192685	C	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:108,63:0.37:171
chr6	84375377	rs217302	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.186;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.075;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr6	84764982	rs45563336	C	T	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:33,107:0.76:140
chr6	84772575	rs367861377	C	T	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.105;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:119,37:0.24:156
chr6	84772845	rs17730011	A	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr6	84799185	rs2875382	C	T	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:74,158:0.68:232
chr6	84799300	rs7450001	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr6	84911336	rs2274092	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr6	84935866	rs9449851	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr6	85448103	rs761391	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr6	85466607	rs117602481	C	G	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chr6	86180926	rs10944129	A	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr6	86196990	rs3812139	C	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr6	86199233	rs2229523	A	G	12078.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.51;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr6	86199233	.	ACGGATGAAAT	GCGGATGAAAC,GCGGATGAAAT	2177	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=59.98;NF=92,151;NR=82,142;PP=2177,1088;QD=12.81878089;SC=CCTGAGACACACGGATGAAAT;SbPval=0.59;Source=Platypus;TC=293;TCF=151;TCR=142;TR=174,293;WE=86199251;WS=86199223;set=Platypus	GT:AF:DP	0/1:0.59:293
chr6	86199243	rs2229524	T	C	4407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=1.347;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:113,207:0.65:320
chr6	86199329	rs9450284	G	C	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=1.497;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:89,46:0.34:135
chr6	86224053	rs6454472	T	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr6	86240147	rs4640862	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.761;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr6	86246709	rs12193777	C	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:99,44:0.31:143
chr6	86246716	rs59514276	T	TA	2489.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:4,105:0.96:109
chr6	86248460	rs9294337	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	87795863	rs7745823	G	T	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	87796161	rs11380231	G	GA	1905.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:3,86:0.97:89
chr6	87796233	rs2011192	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	87797953	rs200419004	AAAC	A	242.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=1.222;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:44,26:0.37:70
chr6	87797954	rs71944433	AAC	A	152.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=0.019;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr6	87879217	rs9351117	C	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr6	87879376	rs9444480	T	C	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	87879378	rs9359738	C	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	87925824	rs71960404	TAGACACACACACACACACACACAC	T	7491.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	87925874	rs45442199	C	A	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	87965528	rs6908834	T	C	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr6	87968565	rs9362415	A	G	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	87969480	rs6910541	G	A	6745.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	87969737	rs3734187	C	T	13659.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr6	87970301	rs3812132	C	G	14245.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr6	87994015	rs6934603	A	G	7392.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr6	87994504	rs35259282	C	T	7681.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr6	87994572	rs4707358	G	A	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	88119528	rs11350856	TA	T	4243.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	88119693	rs6454616	G	A	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	88119736	rs6915562	T	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	88120512	rs6909168	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	88182704	rs9450704	G	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	88210467	rs71554725	AT	A	361.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=0.265;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr6	88216252	rs13216482	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	88219037	rs2273130	C	T	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	88226641	rs9450723	A	G	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	88228524	rs3734908	G	A	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	88229263	rs13203056	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	88231285	rs3757371	C	T	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	88234185	rs2273131	A	G	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	88251869	rs7773906	T	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	88255203	rs112789867	GA	G	263.90	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.483;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr6	88255205	.	A	G	211.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-0.140;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	88255274	rs35056836	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	88255438	rs4707374	T	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	88255499	rs11405796	A	AG	568.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	88273969	rs6900057	A	C	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	88274253	rs35610797	G	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	88294297	rs6927826	C	T	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	88294309	rs6927654	A	T	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	88294535	rs34008333	A	C	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	88300013	rs9450752	A	G	7525.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr6	88303967	rs7750207	A	C	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	88311457	rs13208201	C	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	88315741	rs2307391	TA	T	1874.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	88317288	rs41273295	C	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr6	88317292	rs10706424	CA	C	432.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	88317628	rs13203649	C	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:54,17:0.24:71
chr6	88317675	rs4706294	G	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	88318883	rs2307389	G	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:107,51:0.32:158
chr6	88331299	rs7772561	A	G	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	88331334	rs34542681	TC	T	1336.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	88361017	rs7772351	G	A	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:22,82:0.79:104
chr6	88361055	rs36090981	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr6	88362943	rs2307393	C	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:216,86:0.28:302
chr6	88366602	rs1075665	A	G	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:25,79:0.76:104
chr6	88366708	rs2307373	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.574;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr6	88366771	rs2307379	A	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	88367560	rs2307383	T	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:71,31:0.30:102
chr6	88410715	rs35171686	C	T	4144.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:87,169:0.66:256
chr6	89388023	rs11753513	T	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=1.490;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:59,26:0.31:85
chr6	89672913	rs113191249	C	CCAAA	1583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=1.282;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:131,48:0.27:179
chr6	89675635	rs117147345	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr6	89790559	rs66688820	CTTCA	C	17668.73	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr6	89793894	rs1130809	G	C	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.945;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:135,44:0.25:179
chr6	89814711	rs9362618	T	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	89814772	rs35869140	CA	C	1518.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	89814830	rs7753709	A	G	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	89816819	rs72915636	G	A	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,84:0.70:120
chr6	89827455	rs117690601	C	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:7,42:0.86:49
chr6	89868078	rs146562265	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr6	89888443	rs3734201	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.017;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr6	89888744	rs1796743	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:128,60:0.32:188
chr6	89889980	rs199771491	AC	A	5528.73	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:88,173:0.66:261
chr6	89894968	rs407206	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr6	89895202	rs406462	G	A	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.02;ReadPosRankSum=-0.881;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:7,44:0.86:51
chr6	89895207	rs364936	G	A	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.12;ReadPosRankSum=-0.154;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:7,43:0.86:50
chr6	89907873	rs422751	G	A	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr6	89909204	rs55999329	G	A	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:45,113:0.72:158
chr6	89913108	rs4590241	C	G	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.121;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.258;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:166,63:0.28:229
chr6	89913112	rs4457139	G	A	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.073;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:173,68:0.28:241
chr6	89913209	rs4590242	C	T	3902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.738;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:334,120:0.26:454
chr6	89913218	rs4445034	T	A	3968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.241;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:323,120:0.27:443
chr6	89913286	rs4386788	T	C	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.571;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:208,81:0.28:289
chr6	89914187	rs2183797	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.115;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr6	89914439	rs12524474	A	G	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:45,138:0.75:183
chr6	89914477	rs1556432	G	A	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	89926966	rs12200969	T	C	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:207,92:0.31:299
chr6	89927155	rs34012805	CA	C	260.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr6	89974063	rs723041	T	C	9730.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr6	89977322	rs58233945	C	CT	5145.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	90312863	rs10944453	C	T	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:187,85:0.31:272
chr6	90315789	rs3748085	A	G	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	90321955	rs2073272	G	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr6	90327873	rs6909915	G	A	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,108:0.77:141
chr6	90333051	rs10944454	C	T	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.367;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:90,34:0.27:124
chr6	90333058	rs10944455	T	A	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.931;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:91,35:0.28:126
chr6	90333599	rs17292811	A	G	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr6	90334101	rs4487551	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr6	90340276	rs3210511	G	A	9486.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:182,419:0.70:601
chr6	90360757	rs9359858	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr6	90361811	rs761729	G	A	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,52:0.73:71
chr6	90366329	rs202054662	CT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.000;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr6	90371202	rs9444701	G	A	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:60,109:0.64:169
chr6	90371704	rs9294443	G	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr6	90371986	rs3818132	C	T	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,66:0.71:93
chr6	90372565	.	TTCC	T	3525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DP=765;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=4.471;QD=4.76;ReadPosRankSum=0.276;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:527,213:0.29:740
chr6	90381849	rs7764076	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr6	90385754	rs9451261	A	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr6	90387233	rs6454769	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,76:0.66:115
chr6	90390443	rs9353689	C	A	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:98,198:0.67:296
chr6	90402482	rs9294445	G	A	6201.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:106,262:0.71:368
chr6	90402840	rs9351212	C	G	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:87,169:0.66:256
chr6	90405306	rs9294446	T	A	5307.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:117,230:0.66:347
chr6	90405993	rs9362672	C	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr6	90415764	rs7743484	A	G	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:63,147:0.70:210
chr6	90418262	rs2026634	C	T	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:65,118:0.64:183
chr6	90422627	rs2013736	G	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr6	90426270	rs9342205	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr6	90428968	rs6454774	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chr6	90432584	rs71024396	A	AT	705.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=63.02;MQRankSum=0.000;QD=20.76;ReadPosRankSum=1.111;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr6	90432662	rs756363	C	T	3173.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:45,139:0.76:184
chr6	90437699	rs7767196	G	A	6505.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:126,282:0.69:408
chr6	90448092	rs4140446	C	T	6485.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:136,290:0.68:426
chr6	90450135	rs2180140	A	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:37,77:0.68:114
chr6	90453248	rs2273245	T	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr6	90453492	rs11358713	AC	A	7403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.015;QD=16.42;ReadPosRankSum=-0.324;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:164,287:0.64:451
chr6	90455084	rs9359861	A	G	4053.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:83,175:0.68:258
chr6	90455429	rs9444704	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	90459454	rs4053618	G	A	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	90463149	rs34799081	GA	G	1084.75	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:9,64:0.88:73
chr6	90466121	rs12191172	T	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr6	90468465	rs6937244	C	A	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:6,137:0.96:143
chr6	90471516	rs34865147	T	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr6	90481453	rs11753375	A	G	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.825;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr6	90494702	rs67115658	A	G	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:242,110:0.31:352
chr6	90497448	rs6923604	T	C	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	90497814	rs4707570	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	90556436	rs34041393	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr6	90567029	.	A	AT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.721;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr6	90583380	rs10944458	T	A	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.184;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr6	90605836	rs7738845	T	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr6	90647759	rs182382	G	C	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr6	91228423	rs1145727	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr6	91228933	rs35412199	TAAG	T	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:48,12:0.20:60
chr6	91246007	rs9345029	T	A	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-2.306;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:101,40:0.28:141
chr6	91269510	rs9294461	C	A	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:213,95:0.31:308
chr6	91278420	rs1145735	T	C	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:19,62:0.77:81
chr6	91281634	rs35467094	TA	T	425.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.572;QD=12.16;ReadPosRankSum=-1.102;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr6	91296420	rs282070	C	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	92231218	rs16884450	G	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:76,60:0.44:136
chr6	93956769	rs450238	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr6	93964319	rs345736	C	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr6	93967851	rs345730	C	T	5889.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:132,251:0.66:383
chr6	93982124	rs345713	A	G	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	94067981	rs164544	C	T	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:72,136:0.65:208
chr6	94120192	rs474809	G	A	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:41,89:0.68:130
chr6	94124530	rs540816	C	A	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:41,66:0.62:107
chr6	96034881	rs148967607	A	ATATG	4128.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	96034895	rs200988008	CTG	C	914.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr6	96650908	rs4307180	A	T	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	96651740	rs3811069	A	G	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	96969917	rs77958363	C	T	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.030;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:163,47:0.22:210
chr6	96973363	rs9400067	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr6	96974386	rs9320194	A	G	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	96988696	rs2475025	A	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	96999220	rs2475024	G	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	96999725	rs1127175	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.222;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr6	97000341	.	CT	C	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=2.333;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:153,53:0.26:206
chr6	97058553	rs2273621	A	G	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-0.198;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:154,76:0.33:230
chr6	97058574	rs2252816	G	A	3579.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:78,161:0.67:239
chr6	97063522	rs9373985	C	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:96,37:0.28:133
chr6	97063555	rs9398148	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:95,35:0.27:130
chr6	97247566	rs392127	T	A	4438.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:87,189:0.68:276
chr6	97339088	rs11402	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.214;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:114,23:0.17:137
chr6	97339275	rs34213186	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.888;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr6	97677118	rs9481410	G	A	9614.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr6	97679540	rs34952523	GA	G	2155.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=23.43;SOR=1.485;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	97694582	rs113639235	A	ATAG	3111.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	97702313	rs67917473	AATTT	A	1196.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	99283376	rs195860	T	G	13485.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr6	99323687	.	C	A	110.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	99353272	rs6935315	A	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.54;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	99374400	rs1011676	G	A	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:114,184:0.62:298
chr6	99572765	rs114569756	A	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.91;MQRankSum=-1.396;QD=4.69;ReadPosRankSum=-0.268;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr6	99572771	rs35787630	AT	A	1689.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.99;MQRankSum=0.361;QD=32.49;ReadPosRankSum=0.961;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:1,51:0.98:52
chr6	99771540	rs221527	T	C	6851.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr6	99796886	rs2388906	T	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	99817419	rs11437017	T	TC	2012.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	99817601	rs4144164	A	G	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	99819379	rs6925344	T	C	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	99819556	rs4574651	C	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	99825227	rs7764793	T	C	11758.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr6	99841907	rs9389317	T	G	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.681;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-2.388;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:93,35:0.27:128
chr6	99842056	rs9376137	C	A	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=1.078;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:241,97:0.29:338
chr6	99842138	rs9376138	C	T	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=1.827;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:85,38:0.31:123
chr6	99842148	rs35863376	C	CT	155.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.206;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr6	99853849	rs11309252	CA	C	663.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr6	99853866	rs7744072	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	99860731	rs4339472	A	G	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr6	99860747	rs9321539	T	C	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.253;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr6	99883694	rs9402791	T	C	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.008;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:171,42:0.20:213
chr6	99883704	rs6570065	T	C	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.99;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	99883842	rs7745005	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	99894086	rs41288947	C	G	4894.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:89,196:0.69:285
chr6	99916182	rs10457650	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr6	99935975	rs2181687	G	A	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	99951750	rs6934692	G	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	99955243	rs11410603	G	GA	651.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-1.297;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:4,36:0.90:40
chr6	99973893	rs10223892	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.599;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:97,26:0.21:123
chr6	99974020	rs72926269	T	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr6	99999019	rs2296155	A	G	87.85	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr6	100006244	rs486881	T	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	100006295	.	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.183;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr6	100010653	rs3831048	AC	A	200.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr6	100014918	rs9484032	T	C	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.339;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:128,44:0.26:172
chr6	100016240	rs330872	A	G	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	100016340	rs41288985	G	C	6264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=0.320;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:140,280:0.67:420
chr6	100056899	rs9494877	T	C	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:235,112:0.32:347
chr6	100061624	.	C	CCCG	641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.635;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=6.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-1.415;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:87,39:0.31:126
chr6	100368759	rs4839764	G	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	100369284	rs13206575	T	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr6	100403812	.	GA	G	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.095;QD=1.47;ReadPosRankSum=1.430;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:106,40:0.27:146
chr6	100964147	rs240780	G	C	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.824;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:119,36:0.23:155
chr6	101037718	rs1006398	T	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr6	101053726	rs7452753	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr6	101054999	rs395521	C	T	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:38,109:0.74:147
chr6	101090377	rs239245	C	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:5,38:0.88:43
chr6	101094554	rs239239	A	G	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:82,182:0.69:264
chr6	101099547	.	ATTAAAATAAAAATATTTTAAATATT	ATAAAATAAAAATATTTTAAATATT,A	557.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=52;set=Intersection	GT:AF:DP	0/1:0.34:50
chr6	101099550	.	AAAATAAAAATATTTTAAATATTTT	A	554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-1.402;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr6	101100528	rs239235	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr6	101100783	rs9399641	T	C	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:68,157:0.70:225
chr6	101163433	rs9403997	A	C	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr6	101166095	rs41288423	G	A	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.549;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:231,88:0.28:319
chr6	101215223	rs11345864	TA	T	5320.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr6	101215244	rs7746961	A	G	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.825;QD=4.05;ReadPosRankSum=-0.798;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:136,47:0.26:183
chr6	101247503	rs3811078	T	C	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:108,56:0.34:164
chr6	101253788	rs4839792	A	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.413;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr6	101296389	rs9390698	G	A	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:56,124:0.69:180
chr6	101311908	rs201325406	T	TA	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=1.510;QD=9.06;ReadPosRankSum=0.252;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr6	101312097	rs846791	C	T	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.63;SOR=1.263;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	101312097	.	CAGAGATT	TAGAGATC,TAGAGATT	825	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=15,27;NR=26,37;PP=825,239;QD=21.4260457283;SC=TTATCTGAAACAGAGATTATA;SbPval=0.75;Source=Platypus;TC=64;TCF=27;TCR=37;TR=41,64;WE=101312112;WS=101312087;set=Platypus	GT:AF:DP	0/1:0.64:64
chr6	101312104	rs705600	T	C	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=0.737;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:26,42:0.62:68
chr6	102074242	rs56357508	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr6	102124410	rs56655044	A	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	102124725	rs184775830	A	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	102133993	rs2852565	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr6	102134022	rs2786251	C	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr6	102134216	rs34360565	T	C	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=8.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.525;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:223,88:0.28:311
chr6	102337480	.	CT	C	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=3.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.516;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:76,57:0.43:133
chr6	102339607	rs200167681	G	GA	1088.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:62,39:0.39:101
chr6	102503196	rs2227281	C	T	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:37,101:0.73:138
chr6	102503317	rs2227283	G	A	7535.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr6	102513865	rs1034253	C	T	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr6	105219748	rs142619769	G	GA	2851.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:47,146:0.76:193
chr6	105232204	rs2290515	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr6	105232233	rs9322817	A	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr6	105232460	rs71763197	C	CA	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr6	105244526	rs6918700	A	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr6	105259111	rs71759768	CTTTA	C	364.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=1.609;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr6	105259116	.	T	TAC	56.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=5.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.261;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:62,10:0.14:72
chr6	105259117	rs56343206	T	A	1061.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=0.301;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:32,37:0.54:69
chr6	105259118	rs377178278	T	C	618.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=0.086;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:42,27:0.39:69
chr6	105259122	rs9486017	C	CAT,T	1940.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.81;ReadPosRankSum=0.826;SOR=0.672;set=HC	GT:AD:AF:DP	1/2:6,13,44:0.21,0.70:63
chr6	105259152	rs2168394	C	T	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:35,127:0.78:162
chr6	105300070	rs201776642	C	CTG	75.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:52,11:0.17:63
chr6	105300074	rs2499661	C	G	592.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr6	105300103	.	T	TGTGCGC	1976.73	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr6	105300105	rs2499662	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr6	105300250	rs9499992	A	G	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.272;QD=13.96;ReadPosRankSum=1.305;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:59,112:0.65:171
chr6	105300262	rs10635352	C	CAG	1524.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:95,46:0.33:141
chr6	105307378	rs9499993	G	A	6597.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:156,299:0.66:455
chr6	105307435	rs2499655	G	A	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:230,132:0.36:362
chr6	105388405	rs7766336	T	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=8.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.174;SOR=0.032;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr6	105405220	rs61701350	T	TC	516.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	105548850	rs221657	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	105577172	rs9404603	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	105577224	rs9404604	A	C	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	105577401	rs4946656	C	T	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	105595261	rs1190274	G	A	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	105602108	rs1190280	T	G	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	105614712	rs1190292	T	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	105614743	rs67687316	TTG	T	859.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-3.130;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:2,32:0.94:34
chr6	106547372	rs811925	C	G	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:48,137:0.74:185
chr6	106555025	rs1010273	G	A	3197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.236;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:562,207:0.27:769
chr6	106634569	rs41292420	C	T	4413.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:190,201:0.51:391
chr6	106727719	rs1624701	C	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr6	106899793	rs7763469	C	T	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	106959961	rs4946759	A	G	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	106959999	rs1340623	C	G	7924.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr6	106967185	rs1159148	A	C	3261.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:297,168:0.36:465
chr6	106967778	rs3747787	T	C	7074.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:149,319:0.68:468
chr6	106975415	rs2219666	A	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr6	106978314	rs2306099	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr6	106987161	rs783397	A	G	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr6	106987370	rs783396	A	C	11603.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr6	106991361	rs61741114	T	C	6019.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:108,267:0.71:375
chr6	106992464	rs1799693	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	106992592	rs2247335	A	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:75,34:0.31:109
chr6	106992844	rs2066201	C	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr6	106999658	rs1676010	A	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	106999822	rs2297970	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:101,40:0.28:141
chr6	107001456	rs1770731	A	T	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	107001568	rs147712157	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr6	107001581	rs1770732	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	107003810	rs2066202	T	C	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	107006347	rs4946763	T	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr6	107050867	rs6568446	A	T	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	107069232	rs1870868	G	A	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	107069451	rs72945075	T	G	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:58,146:0.72:204
chr6	107076783	rs1987623	A	T	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=-0.530;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:36,68:0.65:104
chr6	107077502	rs2054365	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr6	107097123	rs34503502	AAC	A	666.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr6	107113715	rs2015205	G	A	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.222;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:197,72:0.27:269
chr6	107113953	rs2169463	C	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.296;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr6	107231881	rs376280113	GTC	G	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.130;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:115,18:0.14:133
chr6	107351195	.	G	GT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.355;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr6	107351457	rs1665924	G	T	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	107361476	rs311207	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	107365376	rs7767291	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	107365411	rs311249	G	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	107372242	rs3833659	GTTTTC	G	3670.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	107420440	rs112889489	A	AT	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.025;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:99,37:0.27:136
chr6	107566946	rs9373933	A	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	107827753	rs17068251	T	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	107956095	rs9486659	A	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	108026317	rs1546962	G	T	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr6	108026402	rs1546961	A	C	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:6,163:0.96:169
chr6	108026455	rs1546960	A	G	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	108041801	rs11751218	G	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.49;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	108042213	rs846977	G	A	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	108042334	rs846978	T	C	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	108093328	rs9480798	G	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	108193148	rs642954	C	T	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	108194241	rs579120	T	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	108197998	rs570558	A	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	108219063	rs9373986	T	C	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.84;ReadPosRankSum=0.377;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr6	108224422	rs2272886	A	C	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.961;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:291,104:0.26:395
chr6	108224599	.	CA	C	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DP=587;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.454;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:386,95:0.20:481
chr6	108230346	rs617920	A	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr6	108233929	rs675117	G	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.653;SOR=1.665;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr6	108243115	rs142388422	T	TGGG	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=3.384;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:178,49:0.22:227
chr6	108243123	rs139413431	AAC	A	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=4.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.173;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:131,76:0.37:207
chr6	108277287	rs9486756	C	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	108279290	rs2272884	G	A	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	108487877	rs127501	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	108489462	rs383319	G	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	108677003	rs2135941	G	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	108677977	rs74349975	G	A	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=2.255;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:205,85:0.29:290
chr6	108840870	rs2274776	A	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:27,69:0.72:96
chr6	108882570	rs11757217	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.87;MQRankSum=-0.387;QD=2.88;ReadPosRankSum=0.304;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr6	109201129	rs17316116	A	C	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:84,149:0.64:233
chr6	109221042	rs9486974	A	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr6	109330758	rs148473451	CG	C	243.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	109480681	.	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.686;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:151,30:0.17:181
chr6	109575596	rs6919557	C	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	109583186	rs1040285	A	G	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	109586062	rs949882	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:139,57:0.29:196
chr6	109586240	rs949881	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr6	109591208	rs9386784	C	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr6	109591433	rs9400262	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:127,49:0.28:176
chr6	109591586	rs9374072	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr6	109615603	rs9487048	G	T	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=3.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.938;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:232,84:0.27:316
chr6	109616762	rs9400272	A	G	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.288;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:290,109:0.27:399
chr6	109621494	rs6927569	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.269;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:81,23:0.22:104
chr6	109629420	rs11153168	A	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr6	109659589	rs57811946	TCACA	T,TCA	2162.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.250;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.23;ReadPosRankSum=1.733;SOR=1.793;set=HC	GT:AD:AF:DP	1/2:1,39,34:0.53,0.46:74
chr6	109659612	rs80090825	C	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.654;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr6	109673933	rs1040284	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.072;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:169,45:0.21:214
chr6	109674055	rs11153174	C	T	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.390;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:473,140:0.23:613
chr6	109689431	rs974034	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:95,35:0.27:130
chr6	109702646	rs3799840	A	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:120,55:0.31:175
chr6	109703391	rs1885691	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:45,16:0.26:61
chr6	109703683	rs2275652	G	C	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.891;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:69,25:0.27:94
chr6	109703727	rs1322816	C	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=1.194;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr6	109726377	rs183670995	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr6	109752565	rs58424410	C	CA	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.052;QD=4.22;ReadPosRankSum=-0.063;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr6	109761352	rs142756236	GGT	G	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=4.472;QD=0.08;ReadPosRankSum=-0.733;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:399,39:0.09:438
chr6	109761437	rs4945831	A	G	3151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.640;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:499,191:0.28:690
chr6	109762236	rs1048203	G	A	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.246;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.304;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:135,53:0.28:188
chr6	109764535	rs1476387	G	T	3301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.786;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:524,201:0.28:725
chr6	109767631	rs6149743	T	TGTGGTCTGGTCAGTGACCTGCCCAGG	1226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.736;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=2.137;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:122,35:0.22:157
chr6	109767930	rs9320288	GC	TT	2523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=0.473;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:70,70:0.50:140
chr6	109768295	rs910730	G	A	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-0.431;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:113,50:0.31:163
chr6	109769224	rs72092669	AACAG	A	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr6	109769319	.	ACCGCCTTCTCCCTCTGT	A	396	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=1;MGOF=26;MMLQ=24;MQ=56.23;NF=9;NR=5;PP=396;QD=28.7142857143;SC=ACACACACACACCGCCTTCTC;SbPval=0.79;Source=Platypus;TC=36;TCF=20;TCR=16;TR=14;WE=109769343;WS=109769309;set=Platypus	GT:AD:AF:DP	1/0:22,14:0.39:36
chr6	109769336	.	TCACACACA	T	161	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=1;MGOF=30;MMLQ=24;MQ=57.3;NF=7;NR=5;PP=161;QD=13.6666666667;SC=TCTCCCTCTGTCACACACACA;SbPval=0.62;Source=Platypus;TC=40;TCF=23;TCR=17;TR=12;WE=109769351;WS=109769326;set=Platypus	GT:AD:AF:DP	0/1:28,12:0.30:40
chr6	109770999	rs752262	G	C	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:167,73:0.30:240
chr6	109775436	rs2277113	T	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:63,28:0.31:91
chr6	109786980	rs3734652	T	C	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.064;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:149,46:0.24:195
chr6	109797304	rs2236084	A	G	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:167,70:0.30:237
chr6	109815351	rs7755941	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:102,58:0.36:160
chr6	109815440	rs7773950	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chr6	109818529	.	T	TCACA	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=4.650;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.468;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:69,13:0.16:82
chr6	109818567	rs3932480	T	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.451;QD=1.96;ReadPosRankSum=3.697;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:118,22:0.16:140
chr6	109827716	rs2277114	C	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:145,62:0.30:207
chr6	109830298	rs6912368	C	T	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.297;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=1.351;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:188,51:0.21:239
chr6	109835310	rs72939262	C	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr6	109837859	rs10872035	T	C	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.313;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=0.262;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:110,39:0.26:149
chr6	109837879	rs7773915	A	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.177;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:76,27:0.26:103
chr6	109850199	rs72331392	AAC	A	297.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr6	109863238	rs9386812	A	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=8.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.239;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr6	109871163	rs9400294	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.792;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.573;QD=3.22;ReadPosRankSum=-0.453;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr6	109885475	rs10499052	G	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.999;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.091;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:118,38:0.24:156
chr6	109886159	rs10872047	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr6	109906329	rs71770197	GCTT	G	233.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;MQ=61.19;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr6	109940498	rs10499053	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-0.831;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr6	109954065	rs146518695	C	CATAG	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.698;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr6	109954252	rs1406957	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-0.903;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:161,39:0.20:200
chr6	109962904	rs7744981	A	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr6	109982160	rs2016207	C	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:74,35:0.32:109
chr6	109993291	rs12197838	G	A	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=9.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=1.057;SOR=1.664;set=HC	GT:AD:AF:DP	0/1:111,40:0.26:151
chr6	109996751	rs829815	T	G	538.41	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr6	110036479	rs6924436	A	T	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr6	110048489	rs11459279	C	CT	877.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.687;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:8,50:0.86:58
chr6	110053721	rs11153215	T	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr6	110053824	rs11377100	G	GT	1624.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=-0.310;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:4,84:0.95:88
chr6	110059510	rs2273752	C	A	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.947;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr6	110062873	rs1322124	T	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr6	110064255	rs72045093	TATTTC	T	3782.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:54,95:0.64:149
chr6	110065049	rs149608939	TAAC	T	2534.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr6	110086098	rs146520572	T	TTTTTTGTTTTTG	497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.601;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr6	110106234	rs10499054	A	G	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr6	110110943	rs9384723	G	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr6	110113939	.	CTTT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.116;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	110428453	rs78868707	T	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr6	110514293	rs77753735	A	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr6	110530254	rs200116966	G	GT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=7.147;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.451;QD=3.44;ReadPosRankSum=-0.230;SOR=0.103;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr6	110550223	rs41288578	T	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr6	110575312	rs4945852	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr6	110643956	rs6908306	T	C	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	110644112	rs112341783	A	AG	2631.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	110679062	rs4945854	T	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	110679158	rs199550919	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-2.391;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr6	110714584	rs2235989	A	T	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr6	110736610	rs9384742	T	C	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	110745977	rs3778650	A	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,31:0.29:106
chr6	110746478	rs79997698	T	A	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:52,114:0.69:166
chr6	110746526	rs7756222	T	C	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	110746545	rs9487402	T	G	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=6.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.158;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:150,61:0.29:211
chr6	110752289	rs1033572	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.084;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:99,42:0.30:141
chr6	110756960	rs221717	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr6	110757008	rs7765849	C	A	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:43,122:0.74:165
chr6	110759826	rs73764916	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:7,44:0.86:51
chr6	110778323	rs717567	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	110797214	rs2428188	C	G	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	110797563	rs2494551	A	C	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	110797605	rs2494552	G	A	12032.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.93;SOR=1.582;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr6	110797612	rs6920997	A	G	12902.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.76;SOR=1.446;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr6	110797703	rs150666553	CCGCGGG	C	22085.73	.	AC=2;AF=1.00;AN=2;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.44;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr6	110797713	.	C	CCACCCCT	23322.73	.	AC=2;AF=1.00;AN=2;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr6	110797821	rs11153236	A	G	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:1,263:1.00:264
chr6	110797905	rs6922017	G	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	110943914	rs9487465	T	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	110944589	rs17622461	C	A	10840.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:1,398:1.00:399
chr6	111213927	rs34637914	T	TC	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=1.230;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr6	111281581	rs6910747	T	G	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr6	111281584	rs11354415	GT	G	1031.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr6	111281880	rs71553315	A	ATAAATAT	3846.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:41,97:0.70:138
chr6	111283592	rs9374227	C	T	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr6	111283718	rs9374228	A	C	5376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=0.233;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:98,243:0.71:341
chr6	111310382	rs67767509	TAC	T	253.75	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr6	111310405	rs3841734	C	CT	175.19	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr6	111318193	rs3763193	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=1.600;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr6	111320794	rs3763195	G	A	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr6	111321037	rs3763196	A	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr6	111346806	rs1044387	C	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=1.125;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr6	111346806	.	CTG	TTA	341	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=25;MQ=60.0;NF=4;NR=8;PP=341;QD=32.8723229052;SC=CCAGCCACTACTGTTTCATTG;SbPval=0.7;Source=Platypus;TC=51;TCF=19;TCR=32;TR=12;WE=111346816;WS=111346796;set=Platypus	GT:AD:AF:DP	0/1:39,12:0.24:51
chr6	111346808	rs1044388	G	A	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=1.240;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr6	111346843	rs1044389	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.329;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr6	111527988	rs402940	G	A	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	111540372	rs405948	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	111543067	rs193282	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=2.368;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	111581114	rs34802709	C	CT	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-0.950;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr6	111587266	rs11153279	T	C	7609.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:207,351:0.63:558
chr6	111654680	rs5879102	CT	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.160;QD=5.08;ReadPosRankSum=-1.352;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr6	111665023	rs240990	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr6	111665071	rs1623806	T	C	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:18,61:0.77:79
chr6	111695073	rs455645	C	T	6197.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:134,266:0.67:400
chr6	111695268	rs455732	C	T	9191.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:184,406:0.69:590
chr6	111695887	rs462779	G	A	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:38,113:0.75:151
chr6	111696257	rs461646	G	A	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:72,172:0.70:244
chr6	111696852	rs458486	T	C	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:32,88:0.73:120
chr6	111711232	rs11376056	C	CG	1222.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr6	111793561	rs7772141	T	C	293.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	111880904	rs6912112	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr6	111901453	rs1043730	G	T	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr6	111913262	rs33980500	C	T	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.195;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:208,68:0.25:276
chr6	111918865	rs174393	G	A	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-0.965;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:70,22:0.24:92
chr6	111918869	rs11153302	A	G	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.852;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:75,23:0.23:98
chr6	111919105	rs115821671	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:145,65:0.31:210
chr6	111922503	rs76228616	G	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:109,44:0.29:153
chr6	112029331	rs1022646	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	112041359	rs706895	T	C	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	112388358	rs9400518	T	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr6	112421805	rs916429	T	C	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:27,76:0.74:103
chr6	112438912	rs3216857	GA	G	1446.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:89,47:0.35:136
chr6	112443134	rs4945897	G	A	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	112450351	rs2157550	G	C	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	112451367	rs34752945	G	T	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:13,49:0.79:62
chr6	112454185	rs764587	A	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr6	112454245	rs3734287	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr6	112457390	rs2032567	C	T	11585.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr6	112457471	rs2032568	G	A	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	112460648	rs2072020	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr6	112462470	rs149046391	ATG	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=4.400;QD=0.21;ReadPosRankSum=1.526;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:182,19:0.09:201
chr6	112480041	rs3752577	A	G	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.370;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:331,121:0.27:452
chr6	112493872	rs1050348	A	G	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,58:0.67:86
chr6	112506375	rs9374309	G	A	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:42,142:0.77:184
chr6	112506583	rs6908219	G	T	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	112508035	rs9400521	C	T	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr6	112508769	rs9387061	TG	GT	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr6	112521183	rs2237242	G	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr6	112521387	rs4947176	A	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:75,42:0.36:117
chr6	112522852	rs11757455	G	A	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:33,115:0.78:148
chr6	114178831	rs113531174	C	CGCT	2581.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr6	114267377	rs6908846	T	A	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-0.091;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:68,32:0.32:100
chr6	114277625	rs2475631	T	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr6	114277884	.	C	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.781;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:92,23:0.20:115
chr6	114279783	rs2243356	A	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:72,29:0.29:101
chr6	114281236	rs75610070	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.942;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr6	116263524	rs12208531	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr6	116264354	rs550480	C	A	4109.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:92,174:0.65:266
chr6	116264386	rs57164993	A	AT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.474;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-1.225;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:110,24:0.18:134
chr6	116288912	rs11398565	T	TA	543.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr6	116325142	rs3756772	C	T	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	116427506	rs56295720	CT	C	547.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.559;QD=13.69;ReadPosRankSum=0.504;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:4,36:0.90:40
chr6	116429623	rs517352	T	A	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	116441229	rs111661664	T	TGGG	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.879;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr6	116559627	.	TAA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-1.440;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	116574455	rs2232472	G	A	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.599;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.007;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:155,55:0.26:210
chr6	116575083	rs2232470	C	A	3395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=2.139;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:481,200:0.29:681
chr6	116575344	rs910391	T	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:140,53:0.27:193
chr6	116579501	rs11153601	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=7.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.488;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr6	116599665	rs9400897	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr6	116600465	rs78371471	T	TCAC	6882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.459;QD=11.87;ReadPosRankSum=0.573;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:387,193:0.33:580
chr6	116600774	rs3749895	C	G	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=9.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.199;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:241,78:0.24:319
chr6	116600810	rs3828743	G	A	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=9.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.644;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:207,71:0.26:278
chr6	116720487	rs10485183	C	T	3172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.906;QD=4.91;ReadPosRankSum=-0.333;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:459,187:0.29:646
chr6	116757557	rs560644	T	C	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:266,112:0.30:378
chr6	116782488	rs2858833	T	C	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	116783330	rs1057192	G	A	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:32,74:0.70:106
chr6	116783390	rs10784	A	G	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	116836720	rs881863	G	A	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:147,56:0.28:203
chr6	116864570	rs4142087	A	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:205,78:0.28:283
chr6	116864852	rs2352482	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:92,37:0.29:129
chr6	116875427	rs7762318	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:128,55:0.30:183
chr6	116878947	rs6906668	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:67,24:0.26:91
chr6	116901603	rs62424374	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr6	116901640	rs1321534	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	116938232	rs13213314	C	G	7194.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:156,305:0.66:461
chr6	116950833	rs784133	T	C	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chr6	117026092	.	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.052;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr6	117037616	rs2243367	A	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	117045491	rs2243368	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr6	117045674	rs1150108	A	G	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	117053239	.	A	T	150	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=4;HapScore=4;MGOF=14;MMLQ=24;MQ=56.31;NF=9;NR=0;PP=150;QD=20.5301347275;SC=CAGTTTGTTTATATATATATA;SbPval=1.0;Source=Platypus;TC=23;TCF=20;TCR=3;TR=9;WE=117053248;WS=117053227;set=Platypus	GT:AD:AF:DP	0/1:14,9:0.39:23
chr6	117073874	rs10556522	AATAT	A	1101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.232;QD=12.52;ReadPosRankSum=-1.423;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:52,36:0.41:88
chr6	117073894	rs10649123	T	TAG	1380.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr6	117073918	rs141678188	T	TATATATAC	853.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.878;QD=15.52;ReadPosRankSum=3.836;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr6	117086265	rs641338	C	A	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=7.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.825;SOR=1.181;set=HC	GT:AD:AF:DP	0/1:190,63:0.25:253
chr6	117113653	rs615199	T	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:93,47:0.34:140
chr6	117114025	rs6901250	G	A	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:322,140:0.30:462
chr6	117114223	rs6924002	T	A	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:343,169:0.33:512
chr6	117114403	rs6901971	G	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:69,31:0.31:100
chr6	117121894	rs6917467	G	A	7031.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr6	117130704	rs2274911	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:202,89:0.31:291
chr6	117203732	rs34335008	GA	G	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.697;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=9.548;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.772;QD=9.49;ReadPosRankSum=-1.380;SOR=3.755;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr6	117215114	rs339340	T	C	6538.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:112,275:0.71:387
chr6	117237524	rs1321372	G	A	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:41,116:0.74:157
chr6	117237584	rs2184343	T	G	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	117239141	rs6936629	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr6	117243181	.	CT	C	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=5.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.457;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:74,28:0.27:102
chr6	117243260	rs7764347	T	C	2565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.764;QD=13.09;ReadPosRankSum=1.443;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:71,125:0.64:196
chr6	117244374	rs7770158	T	C	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:37,90:0.71:127
chr6	117246576	rs67292089	G	GA	826.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.050;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:137,55:0.29:192
chr6	117246719	rs4946206	C	T	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:69,193:0.74:262
chr6	117248218	rs611349	T	C	7864.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:182,339:0.65:521
chr6	117249847	rs597688	A	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr6	117250182	rs673055	C	T	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr6	117252672	rs631089	C	A	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:37,71:0.66:108
chr6	117252759	rs630695	T	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr6	117587054	rs433425	T	C	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	117587074	rs439418	A	G	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	117622184	rs619203	G	C	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.21;ReadPosRankSum=-1.001;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr6	117622188	rs529156	T	G	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.037;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.10;ReadPosRankSum=-1.566;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:23,35:0.60:58
chr6	117622233	rs529038	C	T	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:43,71:0.62:114
chr6	117631463	rs71554877	T	TTAA	1576.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr6	117631543	rs372650546	AT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.78;ReadPosRankSum=-2.446;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	117632139	rs189180446	G	T	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:293,131:0.31:424
chr6	117678083	rs2243384	A	G	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.623;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:149,57:0.28:206
chr6	117681436	rs150963992	G	GACAC,GACACACAC	3169.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=103;set=Intersection	GT:AF:DP	1/2:0.29,0.67:76
chr6	117686840	rs2229078	T	C	3654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-0.320;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:65,163:0.71:228
chr6	117686943	rs2243383	A	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr6	117714346	rs1535330	C	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.832;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr6	117724411	.	C	T	489.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr6	117724462	rs2243379	C	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr6	117724499	rs1407179	A	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr6	117725578	rs2243378	T	A	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:60,132:0.69:192
chr6	117730592	rs2273602	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr6	117730819	rs2273601	G	A	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:59,173:0.75:232
chr6	117737390	rs2243	G	A	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=1.215;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:21,63:0.75:84
chr6	117804117	.	GCGGGGCGGGCCGGGCCGGGCCGAGGGCTA	G	372.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr6	117861923	rs35230921	A	G	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.713;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:180,58:0.24:238
chr6	117862048	rs2071825	C	A	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:81,163:0.67:244
chr6	117864144	rs210619	A	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr6	117865928	rs9320608	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr6	117869491	rs210621	G	A	27255.77	.	AC=2;AF=1.00;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	1/1:0,1000:1.00:1000
chr6	117869530	rs11757765	G	A	4667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=989;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.554;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:702,283:0.29:985
chr6	117896728	rs10484300	A	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.260;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr6	117896786	rs2301424	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.971;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr6	117896840	rs3833931	GA	G	119.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr6	117996818	rs9767451	T	C	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.90;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	118013034	rs13217247	G	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:92,35:0.28:127
chr6	118786486	rs3798420	T	C	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:76,135:0.64:211
chr6	118801232	rs67283653	TCA	T	405.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr6	118832320	rs9489424	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr6	118886615	rs763254	T	C	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:50,113:0.69:163
chr6	118886961	rs3734382	G	T	4752.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:90,198:0.69:288
chr6	118887303	rs3734381	T	C	4764.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:116,214:0.65:330
chr6	118887398	.	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-2.008;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:260,50:0.16:310
chr6	118973953	rs9489486	A	G	1931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=-0.456;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:19,86:0.82:105
chr6	118973998	rs1936059	G	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.314;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr6	118974042	rs9489487	C	T	768.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.23;ReadPosRankSum=-1.435;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:4,34:0.89:38
chr6	119136759	rs65685	A	C	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:237,101:0.30:338
chr6	119149149	rs284921	C	G	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:59,105:0.64:164
chr6	119177480	rs36160966	T	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	119300477	rs4946382	A	G	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	119300688	rs184225123	A	C	3924.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:71,167:0.70:238
chr6	119323987	rs3756940	A	T	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	119327112	rs794262	G	A	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	119346010	rs1775613	T	C	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr6	119346912	rs6929403	G	A	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr6	119509785	rs2142887	C	G	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	119509870	rs2142888	G	A	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	119510739	rs2072888	C	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	119510777	rs2072889	T	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	119510941	rs2072890	C	A	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	119522252	rs3822996	G	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	119522353	rs9481890	T	C	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	119522553	rs9481891	A	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	119611708	rs9489670	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr6	119611934	.	G	GA	548.73	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr6	119611989	rs9489671	A	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr6	119623079	rs6917129	AT	GC	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;JOINED;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr6	119623358	rs11153807	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr6	119623415	rs6918089	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	119627976	rs6915559	G	A	3985.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:68,170:0.71:238
chr6	119628029	rs195092	C	T	11042.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr6	119628198	rs6915947	G	A	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr6	119653186	rs7754482	G	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,54:0.74:73
chr6	119653287	rs195075	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.161;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	121427283	rs56356586	T	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:111,53:0.32:164
chr6	121436422	rs7772508	G	T	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	121491472	rs1273749	G	A	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	121526447	rs9320795	G	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	121526459	rs35328788	G	T	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	121526465	rs35549991	G	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	121560155	rs12191616	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,29:0.28:104
chr6	121577370	rs7745023	T	C	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=4.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.430;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:107,46:0.30:153
chr6	121620608	rs9387944	G	T	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	121629167	rs9398629	G	A	3878.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:86,178:0.67:264
chr6	121632008	rs9372653	T	A	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	122720806	rs6926219	G	A	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:42,96:0.70:138
chr6	122734972	rs549302	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	122743502	rs487487	T	C	369.80	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr6	122752550	rs149578348	T	TTA	404.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	122772692	rs510283	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr6	122772903	rs71732069	C	CA	148.06	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,4:0.67:6
chr6	122772923	rs6569259	T	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.74;MQRankSum=-2.347;QD=10.98;ReadPosRankSum=1.628;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	122772925	rs55740173	T	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.74;MQRankSum=-2.347;QD=10.98;ReadPosRankSum=1.103;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	122773119	rs17260829	T	C	3026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-0.414;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:69,140:0.67:209
chr6	122775195	rs499825	A	C	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=-2.095;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:17,54:0.76:71
chr6	122793033	rs1267941	A	G	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:32,91:0.74:123
chr6	123022496	rs4382328	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,43:0.37:117
chr6	123038887	rs6920792	CT	GC	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	123039201	rs34684181	T	G	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr6	123101348	rs2171068	G	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	123101373	rs2279382	T	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr6	123101647	rs2243372	A	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	123122464	rs28385609	C	T	5412.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:124,243:0.66:367
chr6	123126106	rs111976561	T	G	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=0.951;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:96,39:0.29:135
chr6	123127597	rs13192569	G	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr6	123369910	rs6900862	T	C	7626.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr6	123370012	rs4624884	G	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr6	123539609	rs361509	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr6	123539684	rs361508	C	T	4190.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.17;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	123539684	.	CT	TC,TT	1032	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=40,61;NR=22,32;PP=1032,326;QD=17.5075463687;SC=GCCTGAACTACTGTGGACAAA;SbPval=0.45;Source=Platypus;TC=98;TCF=65;TCR=33;TR=62,93;WE=123539693;WS=123539674;set=Platypus	GT:AF:DP	0/1:0.63:98
chr6	123539685	rs1259	T	C	1769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=0.462;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:34,74:0.69:108
chr6	123539904	rs7754205	C	T	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:57,120:0.68:177
chr6	123545159	rs11368178	GA	G	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.378;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr6	123580660	rs12661887	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	123592184	rs113318627	C	CTG,CTGTG	1251.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	1/2:0.27,0.73:33
chr6	123600066	rs17735121	C	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	123600100	rs143535631	CA	C	1106.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	123658671	rs1157133	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.82;ReadPosRankSum=-0.328;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	123658680	rs12216080	A	G	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	123687288	rs2873479	A	C	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	123687432	rs7769808	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	123696766	rs17737379	G	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr6	123702642	rs9482382	T	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.559;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr6	123703168	rs56239280	C	T	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-0.227;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,36:0.58:62
chr6	123709833	rs17737834	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr6	123714656	rs73771940	GC	TT	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr6	123758414	rs9320934	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr6	123758442	rs9320935	A	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr6	123758492	rs9320936	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.99;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	123758510	rs10223545	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.81;ReadPosRankSum=1.194;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr6	123758514	rs10223841	A	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.98;ReadPosRankSum=1.846;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	123758586	.	C	T	109	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=1;HapScore=2;MGOF=60;MMLQ=28;MQ=60.0;NF=1;NR=5;PP=109;QD=23.9618687579;SC=TCTTCCTCTGCTACCCAGGCT;SbPval=0.73;Source=Platypus;TC=10;TCF=2;TCR=8;TR=6;WE=123758594;WS=123758576;set=Platypus	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	123759967	rs9320937	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr6	123777762	rs13210103	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr6	123777833	rs13194238	C	T	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-0.315;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:71,22:0.24:93
chr6	123778708	rs71541231	CT	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.854;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr6	123778732	rs6915179	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr6	123778835	rs143257093	T	TAACTG	1599.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:92,43:0.32:135
chr6	123786261	.	CA	C	53	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=6;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=53;QD=26.0;SC=TATTATTATGCAAAAAAGAAA;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=3;WE=123786269;WS=123786251;set=Platypus	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	123819847	rs9320940	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.499;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr6	123833457	rs6902416	G	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.230;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr6	123868665	rs7450199	G	A	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	123869607	rs9490809	G	C	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	123869769	rs66509682	TAA	T	2888.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;QD=24.48;SOR=1.264;set=HC	GT:AD:AF:DP	1/1:14,104:0.88:118
chr6	124676685	rs144139894	TC	T	428.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	124811558	.	GT	G	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.533;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr6	124979689	rs1479039	T	C	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:47,81:0.63:128
chr6	125139473	rs1923726	TG	GC	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.967;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:148,32:0.18:180
chr6	125144352	rs2025251	T	G	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:343,159:0.32:502
chr6	125229538	rs781733	T	C	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:150,78:0.34:228
chr6	125229856	rs781734	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr6	125230075	rs781735	A	C	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	125230575	rs1577203	G	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-1.492;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:93,38:0.29:131
chr6	125230965	rs1761559	A	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.637;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:97,20:0.17:117
chr6	125231037	rs1761560	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.244;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr6	125231246	rs1750578	T	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.598;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr6	125232072	rs699387	T	C	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-1.293;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:70,24:0.26:94
chr6	125232333	rs781739	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:95,38:0.29:133
chr6	125232368	rs781740	G	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-1.685;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:85,32:0.27:117
chr6	125232766	rs11385725	C	CA	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.240;QD=4.04;ReadPosRankSum=0.611;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr6	125232853	rs6569400	A	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr6	125233518	rs781742	A	G	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.456;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:197,66:0.25:263
chr6	125252994	rs9401786	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr6	125284457	rs9401790	T	C	16918.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr6	125330619	rs112538609	GA	G	537.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr6	125366289	rs34249175	CA	C	1846.73	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:73,118:0.62:191
chr6	125614108	.	A	C	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.09;ReadPosRankSum=-2.521;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:26,88:0.77:114
chr6	126072853	rs2875881	C	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	126075709	rs10617027	AT	A	576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.056;QD=8.87;ReadPosRankSum=-1.886;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:17,48:0.74:65
chr6	126080522	rs61737181	G	C	6228.77	.	AC=1;AF=0.500;AN=2;DB;DP=1011;set=Intersection	GT:AD:AF:DP	0/1:677,332:0.33:1009
chr6	126202138	rs2295955	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:108,46:0.30:154
chr6	126210395	rs6919947	T	G	6211.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:121,250:0.67:371
chr6	126221008	rs11154336	G	A	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	126242004	rs4563736	CG	GC	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	126249755	.	CT	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.567;QD=1.96;ReadPosRankSum=0.035;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:69,28:0.29:97
chr6	126278230	rs2295005	G	C	4874.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:93,208:0.69:301
chr6	126288023	rs3757212	T	C	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:48,138:0.74:186
chr6	126307962	rs6569448	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr6	126319881	rs6569449	T	A	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr6	126334041	rs2206941	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:56,98:0.64:154
chr6	126669479	rs9401876	C	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr6	127640190	rs9285460	A	G	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr6	127768762	rs6902288	G	A	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:77,151:0.66:228
chr6	127768950	rs2236027	A	C	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr6	127770923	rs3818135	A	C	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.783;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=0.310;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:40,96:0.71:136
chr6	127771452	rs3734447	T	G	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:43,99:0.70:142
chr6	127797179	rs3734448	G	A	8640.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:133,357:0.73:490
chr6	127797374	rs3734450	G	A	11371.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:203,500:0.71:703
chr6	127898305	rs9388590	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	128031244	rs13219590	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr6	128040839	rs675531	T	C	5260.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:148,237:0.62:385
chr6	128128374	rs9767314	G	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=0.473;QD=2.98;ReadPosRankSum=0.628;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	128134685	rs10872326	C	G	4892.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:80,204:0.72:284
chr6	128176383	rs270032	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr6	128291199	rs3190930	C	T	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.929;SOR=1.293;set=HC	GT:AD:AF:DP	0/1:108,34:0.24:142
chr6	128297986	rs4321844	G	T	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	128304358	rs113581270	A	AC	7475.73	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:65,204:0.76:269
chr6	128307118	rs4341027	T	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-1.272;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr6	128307155	rs34209700	T	TA	373.87	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr6	128312033	rs12055782	A	G	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:31,74:0.70:105
chr6	128312114	rs5879871	T	TAG	854.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr6	128312324	rs9388612	T	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr6	128322437	rs34601789	T	C	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:17,63:0.79:80
chr6	128324241	rs717851	T	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:104,42:0.29:146
chr6	128327031	rs45582334	A	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr6	128330249	rs9321104	T	C	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	128385998	rs4897241	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	128388799	rs35030557	G	T	1628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=3.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.267;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:292,110:0.27:402
chr6	128388990	rs4897242	A	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	128389074	rs4897243	T	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	128812869	rs76361302	CTT	C	4078.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:73,121:0.62:194
chr6	128813085	rs17460940	C	T	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:56,95:0.63:151
chr6	128841382	rs11752256	G	A	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:25,59:0.70:84
chr6	128841648	rs62426793	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr6	129381026	rs4404787	C	A	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	129612624	rs1015846	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	129619150	rs1027200	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr6	129622055	rs902373	A	G	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.410;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:101,32:0.24:133
chr6	129722389	rs3749877	A	G	2200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.737;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:377,140:0.27:517
chr6	129722425	rs3749878	G	A	1983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.645;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:431,136:0.24:567
chr6	129724894	rs2326817	A	G	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=1.392;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:266,95:0.26:361
chr6	129724942	rs3828735	T	A	5551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-1.659;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:429,164:0.28:593
chr6	129724944	rs80125253	CT	TG	5533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-1.709;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:436,164:0.27:600
chr6	129763197	rs7738519	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr6	129777382	rs1811970	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr6	129785391	rs1414736	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr6	129799682	rs2784895	C	T	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	129802302	rs2275214	G	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	129807483	rs6569604	C	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	129807629	rs2229848	C	T	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	129807699	rs2229849	G	C	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	129807869	rs6938825	C	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	129823645	rs7754167	A	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	129835370	rs13196682	T	A	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	129920298	rs145578474	AAATTTTGGTATTAAAAAAATACT	A	529.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	129927014	rs3813366	A	G	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr6	129932648	rs34046462	A	C	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:39,75:0.66:114
chr6	129932894	rs7753754	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	129937456	rs12524078	A	G	4049.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:80,178:0.69:258
chr6	129950392	rs371859952	CTA	C	83.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.462;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr6	129950394	rs4295498	A	C	271.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=1.142;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	129950396	rs71543162	A	C	508.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.27;ReadPosRankSum=0.709;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr6	129955117	rs9375645	A	C	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	129955151	rs113829468	G	GA,GAA	3451.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.102;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.28;MQRankSum=0.793;QD=30.55;ReadPosRankSum=0.476;SOR=1.458;set=HC	GT:AD:AF:DP	1/2:4,80,29:0.71,0.26:113
chr6	129955171	rs13218300	A	G	2099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=0.326;QD=14.48;ReadPosRankSum=-0.968;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:47,98:0.68:145
chr6	129955327	rs12664247	T	C	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	130031215	rs3752536	T	C	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	130152479	rs7758540	T	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-2.273;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:92,31:0.25:123
chr6	130152520	rs7776426	A	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:98,37:0.27:135
chr6	130154686	rs4629709	A	G	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:234,112:0.32:346
chr6	130164764	rs9321190	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.467;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:83,27:0.25:110
chr6	130164856	rs9402185	C	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	130167131	rs12189832	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:86,36:0.30:122
chr6	130370404	rs75575024	C	CCT	7287.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	130370731	rs142539365	TTG	T	5264.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	130371055	rs3890746	C	T	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	130374102	rs9388768	C	A	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	130378833	rs12661188	T	C	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	130381246	rs7451021	T	C	7661.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr6	130387431	rs148263906	G	GTATATATATATATA,GTATATATATATATATA	672.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=16;set=Intersection	GT:AF:DP	1/1:1.00:14
chr6	130387773	rs9402214	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	130466413	rs4897369	G	A	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	130466676	rs4897370	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr6	130483222	rs9321214	G	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	130504496	rs66496448	GA	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.368;QD=1.71;ReadPosRankSum=-1.180;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr6	130505284	rs41285308	C	T	3466.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:60,146:0.71:206
chr6	130505374	rs41285310	A	C	3844.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:64,160:0.71:224
chr6	130530815	rs1932100	C	T	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	130535420	rs4897377	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr6	130536494	rs34071457	AT	A	3759.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:4,178:0.98:182
chr6	130537005	rs2326951	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:153,67:0.30:220
chr6	130761798	rs3813360	T	C	5456.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:114,235:0.67:349
chr6	130761957	rs3813359	A	G	6257.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:136,281:0.67:417
chr6	131481394	rs67922791	CA	C	354.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr6	131490472	rs1408027	T	C	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	131900144	rs56325116	GC	AT	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr6	131903954	rs142782396	G	GAC	819.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr6	131904704	rs60712846	G	GA	2020.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	131904719	rs17599586	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,21:0.29:72
chr6	131926259	rs59558743	CT	C	183.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr6	131948469	.	G	GA	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=4.002;QD=1.83;ReadPosRankSum=1.211;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:122,44:0.27:166
chr6	131948816	.	T	TA	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-1.500;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:185,53:0.22:238
chr6	131958485	rs9375819	A	C	10015.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr6	131979652	rs9483311	C	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	131995313	rs9493048	A	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:23,65:0.74:88
chr6	131997798	rs2286453	A	C	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr6	131998001	.	G	GT	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.765;QD=1.12;ReadPosRankSum=0.108;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:101,26:0.20:127
chr6	132014885	rs3213694	G	T	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr6	132022419	rs201739285	G	A	2543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.037;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.74;MQRankSum=0.739;QD=17.30;ReadPosRankSum=-0.894;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:45,102:0.69:147
chr6	132043349	rs378697	A	T	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr6	132045310	.	A	G	2346.77	.	AC=1;AF=0.500;AN=2;DP=145;set=Intersection	GT:AD:AF:DP	0/1:47,95:0.67:142
chr6	132113403	rs9493099	T	C	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr6	132168996	.	G	GGT,GGTGTGT	799.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=2.881;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.68;MQRankSum=-0.158;QD=33.32;ReadPosRankSum=-0.115;SOR=0.208;set=HC	GT:AD:AF:DP	1/2:2,8,14:0.33,0.58:24
chr6	132172368	rs1044498	A	C	1777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=1.130;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:36,79:0.69:115
chr6	132181673	rs9493113	T	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=4.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-1.116;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr6	132193395	rs7769712	A	C	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	132203432	rs7768480	A	G	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:29,74:0.72:103
chr6	132203470	rs1799774	AT	A	4687.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	132204625	rs9493117	C	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr6	132207964	rs10692757	C	CTCT	4132.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	132211418	rs9493119	A	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr6	132270728	rs59140114	GA	G	306.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.274;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.548;QD=18.04;ReadPosRankSum=-1.440;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr6	132271952	rs7451102	G	C	7815.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	132271959	rs12206231	T	G	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	132271980	rs6934749	T	G	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	132789363	rs3765577	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr6	132859609	rs2842899	T	A	10208.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr6	132860522	rs2842898	C	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	132860543	rs17061384	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr6	132891977	rs41298397	T	C	2175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.546;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:348,130:0.27:478
chr6	132909924	rs201109454	T	C	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:182,89:0.33:271
chr6	132910612	rs3813355	G	A	5810.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:117,253:0.68:370
chr6	133013544	rs45562238	T	C	6632.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:164,302:0.65:466
chr6	133015271	rs2272996	T	C	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-2.414;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:193,70:0.27:263
chr6	133032759	rs3798792	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr6	133035098	rs2294757	G	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr6	133035325	rs4897612	A	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr6	133044934	.	C	T	2317.77	.	AC=1;AF=0.500;AN=2;DP=350;set=Intersection	GT:AD:AF:DP	0/1:222,126:0.36:348
chr6	133045812	rs2294758	G	A	4781.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:108,213:0.66:321
chr6	133045902	rs2294759	A	G	6114.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:124,257:0.67:381
chr6	133048213	rs9493417	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr6	133052616	rs4895943	C	T	5359.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:112,247:0.69:359
chr6	133055610	rs764262	G	T	12469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.12;ReadPosRankSum=2.641;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:110,304:0.73:414
chr6	133055612	rs764263	GT	CC	12586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.596;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.77;ReadPosRankSum=2.009;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:108,301:0.74:409
chr6	133070995	rs4895944	G	T	8396.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr6	133072650	rs1883617	A	G	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:67,142:0.68:209
chr6	133074645	rs9493425	A	G	3375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=0.953;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:52,157:0.75:209
chr6	133074663	rs9493426	T	C	2746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.426;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=0.166;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:41,126:0.75:167
chr6	133077063	rs1883613	T	C	4468.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:103,208:0.67:311
chr6	133079136	rs3901670	A	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr6	133135974	rs41286196	G	A	4767.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:70,192:0.73:262
chr6	133138067	rs111916606	AT	A	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.161;QD=1.10;ReadPosRankSum=-1.945;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:133,38:0.22:171
chr6	133827148	rs6929656	T	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	133827354	rs2277083	A	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	133849789	rs3822939	A	G	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr6	133849966	rs3734279	C	T	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	133852212	.	C	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.832;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr6	134210497	rs5880197	G	GTCTC	1836.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr6	134305494	rs2273097	A	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr6	134494548	rs1743965	C	T	8172.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr6	134495291	rs3215438	T	TC	815.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr6	134536272	.	C	CTTTCT	575.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.93;MQRankSum=-0.000;QD=19.19;ReadPosRankSum=0.126;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr6	134536309	rs4896026	G	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	135260303	rs7754722	T	C	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	135318226	.	G	GA	749.73	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:31,50:0.62:81
chr6	135502818	rs191790152	G	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.333;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr6	135708894	.	TA	T	101.73	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	135748200	rs2757639	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	135752608	rs2614270	T	C	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	135754471	rs737561	C	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	135763585	rs2614274	T	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	135763866	rs2757645	G	A	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	135813251	rs9402709	G	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	135818897	rs13197384	C	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	136568487	.	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.458;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr6	136582113	rs62431281	A	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-1.423;QD=4.34;ReadPosRankSum=-0.569;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr6	136582203	rs74299323	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.427;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-2.484;QD=2.22;ReadPosRankSum=0.802;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:39,6:0.13:45
chr6	136582417	rs62431283	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.111;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-8.976;QD=0.57;ReadPosRankSum=-3.929;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:145,19:0.12:164
chr6	136582497	rs62431284	G	T	3662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-10.654;QD=6.47;ReadPosRankSum=2.412;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:369,197:0.35:566
chr6	136589425	rs77081633	G	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=39.136;MLEAC=1;MLEAF=0.500;MQ=51.15;MQRankSum=-5.543;QD=3.50;ReadPosRankSum=1.334;SOR=5.607;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr6	136590613	rs62431285	T	C	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.151;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-7.530;QD=2.20;ReadPosRankSum=-2.080;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:196,51:0.21:247
chr6	136590640	rs62431286	A	C	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.548;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-8.698;QD=2.43;ReadPosRankSum=0.298;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:257,72:0.22:329
chr6	136590698	rs62431287	C	T	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-9.924;QD=1.38;ReadPosRankSum=0.867;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:368,78:0.17:446
chr6	136590712	rs62431288	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-9.724;QD=1.42;ReadPosRankSum=-2.953;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:368,77:0.17:445
chr6	136595439	rs5880289	T	TA	316.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.487;QD=15.08;ReadPosRankSum=0.518;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr6	136597004	rs7762367	A	G	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=8.521;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-2.781;QD=2.26;ReadPosRankSum=-1.220;SOR=1.313;set=HC	GT:AD:AF:DP	0/1:182,47:0.21:229
chr6	136597262	rs1967444	T	C	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:316,230:0.42:546
chr6	136597281	rs1967445	A	T	7918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=14.50;ReadPosRankSum=1.507;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:320,226:0.41:546
chr6	136597288	rs1967446	A	C	8099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=15.23;ReadPosRankSum=0.611;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:305,227:0.43:532
chr6	136598895	rs58951987	T	TA	176.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	136599393	rs6940018	G	C	7368.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:405,336:0.45:741
chr6	136599404	rs6919254	T	C	6220.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:380,311:0.45:691
chr6	136599822	rs9942517	C	G	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.200;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-3.358;QD=3.63;ReadPosRankSum=2.919;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:125,42:0.25:167
chr6	136599836	rs9942518	G	A	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.258;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-3.358;QD=8.14;ReadPosRankSum=1.561;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:125,42:0.25:167
chr6	136599842	rs9942519	G	A	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-3.838;QD=8.17;ReadPosRankSum=0.562;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:127,44:0.26:171
chr6	136599910	.	T	TGTATCGCTTCTTTCTAGAATGAGATCTTGATCTTGATCG	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.944;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=4.904;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-6.718;QD=1.23;ReadPosRankSum=-3.360;SOR=1.557;set=HC	GT:AD:AF:DP	0/1:96,11:0.10:107
chr6	136682172	rs2076190	G	A	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	136698697	rs2076192	C	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	136710669	rs58458173	TA	T	1014.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=5.101;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.553;QD=5.15;ReadPosRankSum=3.088;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:100,97:0.49:197
chr6	136878751	.	G	GT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=1.668;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:195,45:0.19:240
chr6	136990283	rs3765259	T	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr6	137026266	rs9321567	T	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr6	137113137	rs55666429	G	A	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	137143611	rs1321470	A	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	137143709	rs1321471	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	137143980	rs11283064	G	GGGGGCC	1023.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	137166682	rs927181	G	A	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	137167445	rs9321575	T	C	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	137187641	rs1884940	G	A	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	137243560	rs202189622	C	A	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:54,159:0.75:213
chr6	137325847	rs1555498	C	T	6156.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	137325901	.	TAAA	T,TA	2485.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=0.956;SOR=1.306;set=HC	GT:AD:AF:DP	1/2:8,27,61:0.28,0.64:96
chr6	137338276	rs433243	A	G	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	137338352	rs451371	G	T	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	137338357	rs442663	A	G	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	137477823	rs2064501	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr6	137482982	rs11154915	C	T	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.952;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:145,67:0.32:212
chr6	137519588	rs11914	A	C	2003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.860;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:303,124:0.29:427
chr6	137524870	.	GAA	G	675.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=9.174;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.110;QD=5.88;ReadPosRankSum=0.089;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:81,34:0.30:115
chr6	137536455	rs1327475	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.474;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:75,24:0.24:99
chr6	137540370	rs7749390	A	G	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-1.552;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:103,43:0.29:146
chr6	137540520	rs2234711	A	G	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-1.678;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr6	138195961	rs71670547	TCTC	T	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=2.652;QD=9.22;ReadPosRankSum=-0.617;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr6	138197331	rs661561	A	C	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:159,77:0.33:236
chr6	138413269	rs648396	A	G	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:63,127:0.67:190
chr6	138413333	rs648802	G	C	4743.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:106,211:0.67:317
chr6	138662416	rs113655368	T	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:84,52:0.38:136
chr6	138753337	rs2039121	C	T	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	138754323	rs2327891	A	G	7454.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr6	138768408	rs2277087	A	T	119.10	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr6	138794628	rs7765573	A	G	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr6	138820324	rs10457670	A	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:66,26:0.28:92
chr6	139017815	rs9399249	A	G	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:90,165:0.65:255
chr6	139017873	rs5880395	G	GC	2357.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:39,68:0.64:107
chr6	139085450	rs4243458	C	T	247.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.63;ReadPosRankSum=1.034;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr6	139085617	rs4472369	C	G	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	139094629	rs111500978	C	CG	854.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:90,47:0.34:137
chr6	139094638	rs59299306	A	G	2425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=27.656;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.025;QD=15.16;ReadPosRankSum=-1.137;SOR=2.334;set=HC	GT:AD:AF:DP	0/1:81,79:0.49:160
chr6	139097174	rs1040773	A	G	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr6	139114113	rs6570282	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	139134558	rs1919691	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr6	139144450	rs200269746	C	T	2546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.500;MQ=44.88;MQRankSum=-1.279;QD=18.59;ReadPosRankSum=1.611;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:44,93:0.68:137
chr6	139144693	rs202126704	C	T	5209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=47.52;MQRankSum=-4.792;QD=16.33;ReadPosRankSum=-0.358;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:94,225:0.71:319
chr6	139184044	rs1188827	C	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	139186081	rs9389630	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr6	139189153	.	A	AAG	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=61.89;MQRankSum=0.000;QD=7.82;ReadPosRankSum=2.692;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr6	139197609	rs1529151	G	A	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:37,110:0.75:147
chr6	139202014	rs1157050	G	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr6	139229695	rs1188867	A	G	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr6	139229743	rs1188868	C	T	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,110:0.77:143
chr6	139456761	rs185694700	T	C	122.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	139487394	rs7768941	T	C	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	139487836	rs3173082	T	C	16236.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr6	139591915	rs77962001	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr6	139598061	.	T	TA	185.73	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr6	141004964	rs5880480	G	GT	3168.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	142384082	rs6907175	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr6	142396726	rs118178270	C	T	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:87,98:0.53:185
chr6	142455130	rs225607	C	T	4692.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:82,202:0.71:284
chr6	142487263	rs225655	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr6	142487469	rs225656	C	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:25,60:0.71:85
chr6	142490107	rs225661	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr6	142491463	rs11446143	C	CG	1493.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	142491584	rs225663	A	G	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.184;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-0.356;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:19,49:0.72:68
chr6	142510676	rs3830800	GTATT	G	2114.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr6	142691950	rs71643377	CT	C	612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.319;QD=3.74;ReadPosRankSum=-0.479;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:94,70:0.43:164
chr6	142718801	rs989946	G	A	11786.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr6	142758631	rs1262686	A	G	6917.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr6	143074700	rs169098	T	C	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	143081847	rs197462	A	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	143091263	rs109836	A	G	7144.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr6	143095100	rs202020297	T	C	7561.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:110,316:0.74:426
chr6	143381918	.	G	GCCCCGC	116.06	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.02;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	143382254	rs138059311	CGT	C	455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.725;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:105,31:0.23:136
chr6	143508660	.	G	GT	6372.73	.	AC=1;AF=0.500;AN=2;DP=451;set=Intersection	GT:AD:AF:DP	0/1:133,285:0.68:418
chr6	143605472	rs9403480	G	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr6	143754938	rs3761999	G	A	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	143766276	rs9373391	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	143784031	rs3830767	AT	A	5107.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	143789181	rs161068	A	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	143792675	rs22908	T	C	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	143825104	rs11155297	G	T	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	144032317	rs2488101	A	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.281;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr6	144032822	rs2488102	A	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.784;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=1.386;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:109,37:0.25:146
chr6	144069984	rs33958582	GT	G	301.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	144086394	rs9496767	G	A	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:44,102:0.70:146
chr6	144104142	rs5880573	A	ATGTGTGTG	298.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=37.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	144104469	rs1012753	A	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.39;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	144258619	rs1884087	G	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	144258650	rs1884088	C	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr6	144258670	rs3215583	C	CA	134.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	144263735	.	C	T	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.171;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:177,69:0.28:246
chr6	144758647	.	CT	C	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.034;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:172,48:0.22:220
chr6	144769661	rs78819787	G	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:62,41:0.40:103
chr6	145822992	rs380883	A	G	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=4.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-0.357;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:206,85:0.29:291
chr6	145823642	rs370653	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr6	145823844	rs391524	A	G	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	145947080	rs1045820	C	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:67,33:0.33:100
chr6	145992330	.	TA	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=1.549;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr6	146007166	rs702322	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	146007332	rs35230590	C	T	4686.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:58,206:0.78:264
chr6	146012061	rs2142978	T	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=11.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=0.426;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr6	146056476	rs2235482	G	C	1891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=1.976;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:38,81:0.68:119
chr6	146056681	rs111332144	C	T	121.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.50;ReadPosRankSum=-0.589;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr6	146112348	rs6931553	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr6	146125466	rs9403747	T	G	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.674;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:193,63:0.25:256
chr6	146125793	rs3811102	A	T	3553.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:335,182:0.35:517
chr6	146126419	rs9373475	C	T	3778.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:456,215:0.32:671
chr6	146207465	rs1062068	A	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.049;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr6	146207502	rs11421576	G	GT	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:66,24:0.27:90
chr6	146207563	rs1062067	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:69,28:0.29:97
chr6	146207657	rs2256998	A	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr6	146216184	rs2247206	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:138,63:0.31:201
chr6	146234644	rs9497426	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,58:0.67:87
chr6	146242676	rs11326222	GT	G	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.080;QD=8.02;ReadPosRankSum=-1.802;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:16,23:0.59:39
chr6	146243581	rs6917482	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr6	146244081	rs34616835	G	GT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=0.371;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr6	146244743	rs6923545	A	G	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chr6	146254100	rs55757353	T	TC	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.181;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr6	146256315	.	G	GA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.025;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr6	146262697	rs9285508	G	T	5899.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:127,267:0.68:394
chr6	146268623	rs9386141	T	A	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:43,110:0.72:153
chr6	146273769	rs9386142	C	T	78.84	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	146480740	rs72225459	TTC	T	111.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.42;ReadPosRankSum=-2.200;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr6	146678929	rs362893	T	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr6	146678952	rs362894	A	G	955.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr6	146678953	rs35301667	G	GT	946.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr6	146755140	rs2942	G	A	9898.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr6	146755324	rs6923492	T	C	11239.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:2,397:0.99:399
chr6	146755515	rs6923864	T	G	9014.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	146755560	rs1047006	T	G	9513.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr6	146755842	rs9373491	C	A	9008.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr6	146975456	rs71778473	TTA	T	7083.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.18;SOR=1.625;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	146975476	rs1322765	T	G	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	146987930	rs9403802	C	T	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	146993306	.	G	GA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.452;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=9.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.141;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr6	147042695	rs11273150	A	AGGGAACATGCAATAATAAGATTTTTAGAGGC	3794.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	147047341	rs3747754	T	C	7360.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr6	147049641	rs11155480	T	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	147049899	rs1327669	T	C	5338.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	147054241	rs146394886	A	ATTAATGTAC	2472.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	147054410	rs67991595	T	TA	1744.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	147054450	rs3761782	A	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr6	147054498	rs3761783	G	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	147062220	rs1327666	C	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	147066954	rs9647636	G	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	147067093	rs9647637	C	T	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	147073639	rs140827988	TATA	T	6697.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	147084985	rs7752601	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	147103416	rs259405	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	147136212	rs1052444	A	T	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:63,101:0.62:164
chr6	147136244	rs259370	A	G	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:69,106:0.61:175
chr6	147136444	rs1052449	A	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr6	147527224	rs377524924	A	G	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:109,62:0.36:171
chr6	147631421	.	TA	T	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=7.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.336;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr6	147635318	rs5880705	T	TAC	1927.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.42;ReadPosRankSum=-0.922;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:19,71:0.79:90
chr6	147694776	.	CTTAAG	C	241.73	.	AC=1;AF=0.500;AN=2;DP=34;MQ=60.63;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr6	148051210	rs34624038	C	CA	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.650;QD=8.40;ReadPosRankSum=0.258;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr6	148701197	rs4897000	A	G	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	148761456	rs2272998	G	C	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:78,152:0.66:230
chr6	148761603	rs9498038	C	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr6	148808624	rs2294778	G	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=1.174;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr6	148808631	rs2294779	G	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.389;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr6	148835416	rs1057793	C	T	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	148848919	rs2110198	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	148861716	rs6909677	G	A	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.844;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:269,94:0.26:363
chr6	148865257	rs208696	A	G	6258.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:117,271:0.70:388
chr6	149275131	rs10080254	T	C	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.859;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr6	149285719	rs3734377	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr6	149340390	rs2275423	G	C	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.967;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:265,72:0.21:337
chr6	149699333	rs13215304	A	G	7560.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:148,322:0.69:470
chr6	149700805	rs2031450	G	A	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	149700873	rs9498341	A	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr6	149700942	rs9498342	C	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-0.188;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr6	149718650	rs237028	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.250;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:85,28:0.25:113
chr6	149719400	rs628488	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr6	149721690	rs237025	G	A	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.115;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:368,134:0.27:502
chr6	149772645	rs415434	A	G	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=1.533;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:134,47:0.26:181
chr6	149780695	rs384163	T	C	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	149780737	rs140859	G	GACTA	3342.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	149782798	rs411091	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	149782847	rs411308	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	149782908	rs376757	A	G	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	149795261	rs382720	T	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	149795342	rs7747354	C	T	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.368;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:107,38:0.26:145
chr6	149795522	rs7747948	G	A	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:176,82:0.32:258
chr6	149862453	rs146577244	G	GTAAA	1480.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr6	149893214	rs140440002	A	AAAAT	87.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,3:0.20:15
chr6	149953835	rs9322202	A	G	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.551;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr6	149953981	rs9800580	C	T	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=7.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=1.714;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:162,58:0.26:220
chr6	149983216	rs3924871	G	A	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-1.151;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:189,61:0.24:250
chr6	149997657	rs62439843	T	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr6	150004779	rs3798761	A	G	2715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.577;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:391,164:0.30:555
chr6	150023348	rs4870509	C	G	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.306;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr6	150039091	rs13210297	G	A	4063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-0.529;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:98,197:0.67:295
chr6	150039148	rs12174349	G	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:162,66:0.29:228
chr6	150064733	rs79644024	CAA	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.736;QD=3.15;ReadPosRankSum=0.920;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr6	150064968	rs58509133	C	CT	1844.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	150064977	rs1572229	T	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr6	150067675	rs10872646	A	G	1867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=0.860;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:309,113:0.27:422
chr6	150093678	rs3805748	C	T	2411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.151;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=3.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.318;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:200,72:0.26:272
chr6	150093682	rs3805749	C	T	2411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.120;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=4.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=0.255;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:205,73:0.26:278
chr6	150094152	.	GA	G	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.591;QD=3.46;ReadPosRankSum=-0.705;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr6	150114606	rs12182220	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr6	150114745	rs4816	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:94,43:0.31:137
chr6	150123316	rs11297063	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.560;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr6	150163911	rs2275045	T	C	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.322;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:148,54:0.27:202
chr6	150164378	rs2184370	G	A	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:240,91:0.27:331
chr6	150184882	rs9322225	G	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-0.483;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:27,41:0.60:68
chr6	150209196	rs9968871	G	A	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=2.302;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:107,26:0.20:133
chr6	150209204	rs9969044	A	G	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.227;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:109,30:0.22:139
chr6	150209309	rs9322228	C	G	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.414;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:157,60:0.28:217
chr6	150209432	rs7774787	G	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.534;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr6	150209717	rs2342767	C	G	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=3.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.637;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:373,107:0.22:480
chr6	150209805	.	TA	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-1.318;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr6	150209849	rs5880858	TA	T	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.476;SOR=1.718;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr6	150210681	rs9371533	G	A	3374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=0.468;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:281,104:0.27:385
chr6	150210685	rs9383921	C	T	3345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=1.280;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:277,100:0.27:377
chr6	150210723	rs6925151	C	T	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=5.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.020;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:209,80:0.28:289
chr6	150210802	rs6933882	A	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:115,51:0.31:166
chr6	150210994	rs6939761	T	C	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=0.513;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:57,25:0.30:82
chr6	150210999	rs3823021	G	C	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.210;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:60,27:0.31:87
chr6	150211100	rs3798763	T	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:101,41:0.29:142
chr6	150211123	rs2151910	A	T	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:97,41:0.30:138
chr6	150263186	rs4343924	A	C	4499.77	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:576,254:0.31:830
chr6	150266578	rs149454018	T	C	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:119,59:0.33:178
chr6	150266740	rs62439758	A	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.404;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=18.749;MLEAC=1;MLEAF=0.500;MQ=55.40;MQRankSum=-14.015;QD=0.66;ReadPosRankSum=-5.166;SOR=2.409;set=HC	GT:AD:AF:DP	0/1:458,62:0.12:520
chr6	150267527	rs2282235	A	C	3084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-1.138;QD=4.91;ReadPosRankSum=-0.012;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:448,180:0.29:628
chr6	150269722	rs184932255	C	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr6	150269761	rs181105068	A	G	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.119;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:103,34:0.25:137
chr6	150322211	rs9397541	C	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:200,79:0.28:279
chr6	150322381	rs9384023	T	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr6	150322408	rs11752135	T	A	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr6	150341260	rs199848645	C	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.48;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	150341990	rs9397120	A	G	15662.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.29;QD=45.14;SOR=1.722;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	150341993	rs9384047	C	A	15896.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.43;QD=44.65;SOR=1.678;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr6	150342232	rs61730071	G	A	27782.77	.	AC=2;AF=1.00;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	1/1:0,1010:1.00:1010
chr6	150343148	rs78563624	A	C	1139.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.17;MQRankSum=-1.809;QD=25.90;ReadPosRankSum=-0.955;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:1,43:0.98:44
chr6	150343211	rs202055124	A	G	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.08;QD=26.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	150346532	rs1543547	T	C	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	150346740	rs1544123	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	150385730	rs912558	T	G	3987.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:91,184:0.67:275
chr6	150385886	rs9478409	C	T	1830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.479;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.984;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:328,117:0.26:445
chr6	150385977	rs912557	C	T	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr6	150387302	rs669009	A	T	6807.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.02;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	150387312	rs6935471	A	G	6382.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	150390313	rs622317	G	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	150464356	rs2297672	A	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	150570063	.	G	GT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.681;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr6	150716696	rs612421	T	C	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	150719266	rs376409306	G	A	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.928;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:306,103:0.25:409
chr6	151004770	rs17080102	G	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:41,71:0.63:112
chr6	151152257	rs926624	A	G	4225.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:74,178:0.71:252
chr6	151152656	rs803411	T	C	5740.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:107,247:0.70:354
chr6	151186857	.	C	CCCG,CCCGCCG	5779.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=165;set=Intersection	GT:AF:DP	1/2:0.69,0.28:147
chr6	151187349	rs9397361	C	G	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.07;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	151187349	.	CACTGCGGCC	GACTGCGGCC,GACTGCGGCT	981	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=23;MQ=59.97;NF=49,38;NR=33,25;PP=152,981;QD=2.27769771399;SC=CGGGCTTGGGCACTGCGGCCG;SbPval=0.55;Source=Platypus;TC=82;TCF=49;TCR=33;TR=82,63;WE=151187366;WS=151187339;set=Platypus	GT:AF:DP	0/1:1.00:82
chr6	151187358	rs9397362	C	T	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-0.483;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:22,76:0.78:98
chr6	151197106	rs2073068	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr6	151197152	rs2073067	C	G	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	151199071	rs2073063	A	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	151219963	rs149723194	G	GATT	339.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr6	151220245	rs803419	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	151247439	rs803455	A	G	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	151258127	rs742830	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:65,24:0.27:89
chr6	151259770	rs6933598	C	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr6	151260002	rs3734416	T	C	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.940;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:82,30:0.27:112
chr6	151266504	rs803445	C	T	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	151266717	rs803444	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chr6	151270369	rs803471	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr6	151281567	rs1771798	T	C	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	151281668	rs7739248	T	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr6	151281707	rs1771796	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	151286224	rs1627462	A	C	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:215,101:0.32:316
chr6	151293277	rs9478878	C	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr6	151336313	rs6910091	T	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr6	151336739	rs509474	C	G	6547.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:119,294:0.71:413
chr6	151362895	rs140096864	CTTG	C	2656.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,67:0.65:103
chr6	151362942	rs1983750	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr6	151413828	rs2295734	C	A	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	151561921	rs5880922	TG	T	386.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.47;ReadPosRankSum=-0.709;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr6	151626774	rs9397388	T	G	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,64:0.76:84
chr6	151627034	rs2294792	A	G	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:24,116:0.83:140
chr6	151627096	rs2294793	C	T	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:15,57:0.79:72
chr6	151665302	rs6941075	T	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	151669875	rs10872670	A	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:31,71:0.70:102
chr6	151670172	rs3734799	A	C	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:60,166:0.73:226
chr6	151670586	rs139227581	G	A	4414.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:71,196:0.73:267
chr6	151670897	rs900654	T	C	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:80,173:0.68:253
chr6	151673074	rs41289375	C	G	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.061;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:226,73:0.24:299
chr6	151674116	rs3842128	T	TGAG	15006.73	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:153,359:0.70:512
chr6	151674326	rs3823310	A	C	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:71,181:0.72:252
chr6	151686905	rs11155787	C	T	15712.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr6	151742541	rs4870017	T	C	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	151748510	rs201656504	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=2.225;QD=1.80;ReadPosRankSum=0.612;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr6	151857370	rs1532401	T	C	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	151857594	rs6931664	A	G	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.056;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:156,54:0.26:210
chr6	151859146	rs35795489	G	GTT	1870.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=14.73;ReadPosRankSum=1.921;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:35,92:0.72:127
chr6	151859314	rs4870034	A	G	8304.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr6	151869725	rs3842129	A	AT	945.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	151894278	rs4242277	G	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	151894505	rs953767	T	C	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	151914421	rs9383930	A	G	4017.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:75,171:0.70:246
chr6	151936677	rs6929137	G	A	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:77,158:0.67:235
chr6	151939181	rs3734804	G	A	4745.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:83,206:0.71:289
chr6	152201875	rs4986934	T	C	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-2.416;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:138,44:0.24:182
chr6	152265282	rs55740371	A	AT	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.660;QD=3.08;ReadPosRankSum=0.850;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:113,41:0.27:154
chr6	152265522	rs1801132	G	C	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:196,77:0.28:273
chr6	152333032	rs117509702	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr6	152420095	rs2228480	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:136,51:0.27:187
chr6	152456438	rs117389517	A	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:71,32:0.31:103
chr6	152464839	rs2256135	A	G	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	152466582	rs2813487	A	G	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.658;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr6	152466674	rs2747662	T	C	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:136,56:0.29:192
chr6	152469188	rs2252755	C	G	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-1.894;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:156,64:0.29:220
chr6	152469331	rs2252748	C	T	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.188;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:176,58:0.25:234
chr6	152489038	rs997769	T	C	15156.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr6	152489294	rs998147	T	C	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	152522812	rs2673776	T	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:63,29:0.32:92
chr6	152523143	rs2635441	G	A	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr6	152534946	rs684807	T	A	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.83;SOR=3.753;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	152534946	.	TT	AA,AT	842	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=2,10;NR=39,62;PP=842,433;QD=21.8406798747;SC=TTATTCTTACTTCTCTAGCAT;SbPval=0.97;Source=Platypus;TC=72;TCF=10;TCR=62;TR=41,72;WE=152534955;WS=152534936;set=Platypus	GT:AF:DP	0/1:0.57:72
chr6	152534947	rs2763029	T	A	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=19.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=0.915;SOR=3.528;set=HC	GT:AD:AF:DP	0/1:31,47:0.60:78
chr6	152539350	rs9371243	C	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr6	152539572	rs35809482	TA	T	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.745;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.648;QD=2.12;ReadPosRankSum=1.146;SOR=1.566;set=HC	GT:AD:AF:DP	0/1:63,26:0.29:89
chr6	152540278	rs2147377	A	C	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	152542234	rs9397492	G	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr6	152542548	rs9383976	A	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr6	152546740	rs1998620	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.652;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.541;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr6	152552375	rs2274142	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.585;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr6	152565897	rs3888239	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr6	152570415	rs6557210	G	A	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:173,82:0.32:255
chr6	152629772	rs55633181	GA	G	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.167;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr6	152629815	rs4112833	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr6	152631256	rs11292345	CA	C	223.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.700;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr6	152638209	rs1890100	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	152639184	rs17082448	C	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr6	152640248	rs2306915	G	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=2.177;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr6	152644476	rs12206044	A	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	152647681	rs2306916	A	T	1375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-0.402;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:138,81:0.37:219
chr6	152650903	rs35085679	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:148,66:0.31:214
chr6	152652034	rs6911096	A	T	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.278;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:191,54:0.22:245
chr6	152652599	rs10499268	G	A	1545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.527;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:235,92:0.28:327
chr6	152658141	rs28385621	CT	AC	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;JOINED;set=Intersection	GT:AD:AF:DP	0/1:100,54:0.35:154
chr6	152658191	rs9479298	T	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr6	152665261	rs4645434	C	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.343;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr6	152665464	rs35003170	TC	T	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=1.418;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr6	152671475	rs9478320	A	C	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.944;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:177,86:0.33:263
chr6	152671553	rs9478321	A	G	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=9.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.027;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:101,33:0.25:134
chr6	152671919	rs5880967	G	GA	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=5.885;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.654;QD=3.44;ReadPosRankSum=-0.095;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:157,62:0.28:219
chr6	152671975	rs1387549	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:85,32:0.27:117
chr6	152673147	rs6908392	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr6	152673519	rs6932325	A	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:64,25:0.28:89
chr6	152675854	rs9397102	A	G	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.896;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:361,121:0.25:482
chr6	152683183	rs7771657	G	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr6	152683199	rs7771662	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr6	152683413	rs4407724	G	T	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	152685861	.	A	AAGGAAGGG	914.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.57;MQRankSum=-3.474;QD=15.25;ReadPosRankSum=2.654;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr6	152685864	.	G	GAA	78.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.048;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=4.872;MLEAC=1;MLEAF=0.500;MQ=66.32;MQRankSum=-0.830;QD=1.46;ReadPosRankSum=3.042;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr6	152685865	.	G	GGGAGGA	475.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.180;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=4.892;MLEAC=1;MLEAF=0.500;MQ=66.32;MQRankSum=-0.905;QD=7.21;ReadPosRankSum=2.927;SOR=1.934;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr6	152688567	rs7775637	C	T	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	152690559	rs1873176	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr6	152694184	rs6913579	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:109,50:0.31:159
chr6	152697706	rs214955	C	T	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:62,134:0.68:196
chr6	152708310	rs214950	G	A	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:39,113:0.74:152
chr6	152711395	rs214943	T	A	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=0.014;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:35,65:0.65:100
chr6	152712302	rs9942542	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.760;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr6	152712752	.	C	T	295	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=28;MQ=58.05;NF=2;NR=11;PP=295;QD=25.3670163498;SC=ATTCTGACATCCTGGAGTGCA;SbPval=0.67;Source=Platypus;TC=23;TCF=4;TCR=19;TR=13;WE=152712760;WS=152712742;set=Platypus	GT:AD:AF:DP	0/1:10,13:0.57:23
chr6	152719602	rs488673	G	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr6	152721029	rs214951	T	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr6	152722228	rs177330	A	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr6	152725239	rs143864698	G	GATATAT,GATATATAT	1186.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=42;set=Intersection	GT:AF:DP	0/1:0.85:39
chr6	152725251	.	TAC	T	1050	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=26;MQ=59.87;NF=5;NR=13;PP=1050;QD=58.6666666667;SC=TATATATATATACACACACAC;SbPval=0.88;Source=Platypus;TC=32;TCF=13;TCR=19;TR=18;WE=152725261;WS=152725226;set=Platypus	GT:AD:AF:DP	0/1:14,18:0.56:32
chr6	152725253	rs28402070	C	T	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=1.358;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr6	152730090	.	C	CA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.819;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr6	152751426	rs554608	A	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr6	152751558	rs553642	C	T	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:42,76:0.64:118
chr6	152768796	rs502268	T	G	2691.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:42,119:0.74:161
chr6	152772264	rs214976	A	G	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:57,105:0.65:162
chr6	152772411	rs61388700	CA	C	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr6	152774917	rs214973	A	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr6	152776750	rs214968	G	A	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:56,125:0.69:181
chr6	152777819	rs214967	G	A	4500.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:65,198:0.75:263
chr6	152782628	rs506181	C	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:8,58:0.88:66
chr6	152782933	rs579464	G	A	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr6	152786963	rs13211693	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr6	152793412	rs4523096	C	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	152793572	rs4331993	T	A	2025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.383;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:64,106:0.62:170
chr6	152793575	rs4343926	A	G	4823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=0.607;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:56,130:0.70:186
chr6	152805889	rs9397512	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr6	152809527	rs9397106	A	T	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:37,74:0.67:111
chr6	152847335	rs2141152	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=4.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.670;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:98,29:0.23:127
chr6	153292226	rs71017562	A	AT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.077;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	153292557	rs35736062	G	GA	513.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:83,42:0.34:125
chr6	153296541	rs2073260	G	C	9376.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr6	153304177	rs148709367	C	G	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=5.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.601;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:118,36:0.23:154
chr6	153311001	rs3860814	A	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.97;QD=28.92;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	153311333	rs3215595	C	CA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.707;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr6	153315695	rs3192723	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr6	153315921	rs3799133	G	A	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	153316018	rs6941558	G	A	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:25,5:0.17:30
chr6	153316326	rs3734467	A	G	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:64,33:0.34:97
chr6	153323594	rs3818123	C	T	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	153323709	rs3818125	T	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	153323806	rs3818126	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr6	153323896	rs3818127	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	153332926	rs34837755	AATAAT	A	1393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.656;QD=29.04;ReadPosRankSum=0.488;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:13,35:0.73:48
chr6	153344531	rs685449	T	A	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	153345309	rs545323	C	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	153365100	rs2295230	A	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:76,37:0.33:113
chr6	153365348	rs2295231	G	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr6	153603373	rs9371678	T	C	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-1.323;QD=10.09;ReadPosRankSum=3.843;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:36,65:0.64:101
chr6	154360508	rs6912029	G	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:166,73:0.31:239
chr6	154361048	rs12209447	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.097;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=0.310;SOR=1.761;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr6	154412004	rs2075572	G	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr6	154414375	rs9282821	A	C	3072.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:54,132:0.71:186
chr6	154414446	rs540825	A	T	7139.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr6	154414563	rs675026	A	G	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=1.398;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	154414573	rs562859	C	T	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=1.393;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	154415434	rs660756	G	T	7334.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr6	154428702	rs650245	A	G	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	154429085	rs71021021	AT	A	407.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	154431393	rs497332	C	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	154567666	rs9479798	T	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:115,48:0.29:163
chr6	154727825	rs12528985	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:45,14:0.24:59
chr6	154732006	rs2275339	G	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr6	154732371	rs62432690	T	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr6	154735973	rs13219628	C	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr6	154743525	rs7771159	T	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr6	154743909	rs3818848	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr6	154749225	rs9384217	A	T	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	154754739	rs9479852	C	T	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:62,102:0.62:164
chr6	154762376	rs199812742	CAA	C	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=9.229;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.089;QD=12.07;ReadPosRankSum=-0.429;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr6	154762394	rs9384219	A	G	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=1.844;QD=14.09;ReadPosRankSum=1.569;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr6	154763401	rs6557351	G	A	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:61,108:0.64:169
chr6	154763522	rs6907693	T	C	622.78	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr6	154771277	rs9322467	A	G	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	154771449	rs4870285	T	C	13177.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr6	155152311	rs911191	C	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	155448546	rs41284210	C	T	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-2.831;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:111,41:0.27:152
chr6	155451352	rs931312	G	A	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:357,152:0.30:509
chr6	155485535	rs1032140	G	A	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.495;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:157,54:0.26:211
chr6	155485554	rs1032141	G	A	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.601;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:192,72:0.27:264
chr6	155561564	rs11751085	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	155561760	rs4259257	T	C	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr6	155561796	rs11751128	C	T	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	155565089	rs6902025	TC	CT	7848.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	155565744	rs6907595	T	C	9555.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr6	155566889	.	G	GTTTTT	2766.73	.	AC=2;AF=1.00;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.91;QD=32.17;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:6,80:0.93:86
chr6	155571113	rs3011902	A	G	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	155571697	rs1041474	T	C	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	155572986	rs3011899	G	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	155573331	rs3011898	A	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	155574198	rs2989458	C	T	7897.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	155574207	rs2274824	T	C	7665.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	155575546	rs1331213	C	G	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr6	155575607	rs3011895	G	A	11850.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr6	155750035	rs231954	C	T	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.369;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:202,62:0.23:264
chr6	155750219	rs231955	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:122,55:0.31:177
chr6	155761246	rs3749930	G	T	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-2.482;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:58,39:0.40:97
chr6	156275691	rs4870405	G	T	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	157101072	rs1261893	A	C	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr6	157150230	rs12206233	A	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr6	157405761	rs3734440	G	A	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:52,93:0.64:145
chr6	157405930	rs3734441	G	A	6868.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:142,314:0.69:456
chr6	157454046	rs6913416	T	C	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr6	157495852	.	T	TAA	94	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=2;HapScore=2;MGOF=32;MMLQ=28;MQ=60.0;NF=6;NR=0;PP=94;QD=16.5;SC=GTACATGTCTTTATATATATA;SbPval=1.0;Source=Platypus;TC=11;TCF=11;TCR=0;TR=6;WE=157495860;WS=157495842;set=Platypus	GT:AD:AF:DP	1/0:5,6:0.55:11
chr6	157495951	.	A	AT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.559;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr6	157522171	rs141783755	T	G	13287.77	.	AC=1;AF=0.500;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	0/1:298,604:0.67:902
chr6	157744588	rs4708868	C	G	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.990;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr6	157950088	rs17541624	G	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:61,27:0.31:88
chr6	157950346	rs9457707	T	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr6	157963550	rs17165416	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.257;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:127,33:0.21:160
chr6	157963743	rs2365611	G	A	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:104,72:0.41:176
chr6	157963842	rs2886421	C	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr6	158049351	.	C	CT	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.348;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:49,26:0.35:75
chr6	158053722	.	A	T	1505.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:21,58:0.73:79
chr6	158068481	rs616538	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	158074504	rs636169	A	G	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	158294104	.	CT	C	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.531;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr6	158322886	rs11367433	CT	C	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.510;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr6	158361899	rs912879	C	T	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:62,147:0.70:209
chr6	158438933	rs1109511	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:63,29:0.32:92
chr6	158475941	rs2296510	T	C	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,75:0.66:113
chr6	158487406	rs1009012	A	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,65:0.70:93
chr6	158487734	rs3215807	C	CT	2862.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:42,116:0.73:158
chr6	158490779	rs751873	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:49,76:0.61:125
chr6	158497717	rs2296508	T	C	6834.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	158499097	rs3831094	G	GT	2194.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	158499302	rs2296507	G	T	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	158502137	rs2256014	G	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	158502590	rs173263	C	A	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	158504981	rs2236401	C	T	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr6	158505088	rs1744173	A	G	10125.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr6	158507981	rs2296506	G	A	9481.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr6	158509750	rs350289	A	G	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	158517308	rs2502601	A	G	5873.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	158517451	rs2502600	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	158535720	rs150169784	T	TTATAAAATGAGATAATACATTCAAGGAA	1552.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=77.64;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	158536116	rs2502604	A	T	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	158571501	rs6929274	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:62,26:0.30:88
chr6	158571655	rs6929520	G	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:34,9:0.21:43
chr6	158735087	rs9364951	C	T	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.690;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:120,52:0.30:172
chr6	158735090	rs7756620	T	C	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.021;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:125,52:0.29:177
chr6	158833935	rs341159	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr6	158833981	rs341158	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:66,24:0.27:90
chr6	158870081	rs705956	A	G	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:164,80:0.33:244
chr6	158870278	rs341136	T	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:140,66:0.32:206
chr6	158882815	.	G	A	2866.77	.	AC=1;AF=0.500;AN=2;DP=165;set=Intersection	GT:AD:AF:DP	0/1:46,119:0.72:165
chr6	158902468	rs10499309	C	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.298;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:86,20:0.19:106
chr6	158910543	rs2274883	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.338;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr6	158914825	rs17504313	G	A	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:167,89:0.35:256
chr6	158923434	rs9364968	G	C	2853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.630;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:481,174:0.27:655
chr6	158924088	rs914690	T	C	14080.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr6	158924595	rs3749853	A	G	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:275,119:0.30:394
chr6	158925267	rs17504643	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr6	158957104	rs9456318	A	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.956;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.064;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr6	158993341	rs34964890	CATA	C	6802.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	158994577	rs4709217	T	G	8562.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	159028464	rs150268011	C	T	637.89	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:3,26:0.90:29
chr6	159029237	.	CAGGTGCTGACCCCGCAGAGGTATGGGGTGCTCTCTGCT	C	981.73	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:76,31:0.29:107
chr6	159029342	rs6925091	G	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:216,90:0.29:306
chr6	159046076	rs6905898	T	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.290;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:60,31:0.34:91
chr6	159047536	rs16900886	C	T	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.045;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:191,75:0.28:266
chr6	159049367	rs4708800	T	C	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:295,141:0.32:436
chr6	159065758	rs2306751	C	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:368,159:0.30:527
chr6	159178345	rs901363	C	T	6508.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr6	159183283	rs41267137	G	A	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=4.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.046;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:167,76:0.31:243
chr6	159316430	rs9457507	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	159590734	rs295332	T	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	159618365	rs11753418	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:94,45:0.32:139
chr6	159652931	rs420137	G	C	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	159653635	rs381639	C	G	17274.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr6	159654487	rs404435	G	T	17917.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr6	159654551	rs370434	C	G	19672.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,700:1.00:700
chr6	159654994	rs402388	A	C	7644.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	159655084	rs420054	C	G	8464.73	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr6	159655102	rs436743	A	G	8859.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	159655326	rs3003174	T	C	15500.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr6	159655383	rs2501176	A	G	37942.77	.	AC=2;AF=1.00;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	1/1:0,877:1.00:877
chr6	159655402	rs2932988	A	G	40784.77	.	AC=2;AF=1.00;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	1/1:0,995:1.00:995
chr6	159655593	rs2501177	C	T	5583.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	159657195	rs420339	G	T	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	159659481	rs419836	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	159659523	rs450538	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	159660779	rs141435210	GCCACCACCCGCCGCACGA	G	4804.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	159660879	rs386360	C	A	5237.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.223;QD=25.06;ReadPosRankSum=1.259;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:4,205:0.98:209
chr6	159667961	rs294911	T	G	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:51,165:0.76:216
chr6	159669953	rs28487880	G	C	1698.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr6	159670276	rs294907	A	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	159670303	rs294906	G	A	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	159672455	rs294899	C	T	14518.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr6	159677498	rs294890	C	T	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	159682206	rs294883	C	T	4871.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	159692321	rs409691	G	A	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	159692559	rs455162	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	160114168	rs5746094	T	C	4155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=1.997;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:69,182:0.73:251
chr6	160114311	rs5746092	G	C	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:40,134:0.77:174
chr6	160114366	rs5746091	C	T	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=56.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=2.707;SOR=5.589;set=HC	GT:AD:AF:DP	0/1:19,50:0.72:69
chr6	160114376	rs5746090	G	A	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.369;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=16.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.84;ReadPosRankSum=2.310;SOR=4.450;set=HC	GT:AD:AF:DP	0/1:12,46:0.79:58
chr6	160133957	rs752779	G	A	8135.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:120,336:0.74:456
chr6	160159907	rs6930976	A	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.265;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.611;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr6	160169258	rs7766006	G	T	5034.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:94,220:0.70:314
chr6	160182617	rs2273818	C	T	4957.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:99,217:0.69:316
chr6	160182749	rs2277073	G	A	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=0.237;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:32,85:0.73:117
chr6	160182796	rs193058938	G	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr6	160182845	rs2277072	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr6	160183325	rs2273819	G	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr6	160184137	rs112953742	AAC	A	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.467;QD=1.53;ReadPosRankSum=0.453;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr6	160198359	rs3464	C	T	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:64,146:0.70:210
chr6	160199424	rs34047044	TA	T	1061.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr6	160199454	rs75848694	TTTAAAA	T	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.07;ReadPosRankSum=-0.497;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	160199687	rs15982	T	C	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.354;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:32,89:0.74:121
chr6	160200026	rs4832	A	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr6	160201295	rs2295901	C	A	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=0.531;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:22,36:0.62:58
chr6	160201677	rs3818300	G	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr6	160202282	rs2295898	C	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	160205991	rs1547093	C	A	4280.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:60,178:0.75:238
chr6	160206716	rs3818298	T	C	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:45,123:0.73:168
chr6	160211485	rs2273823	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr6	160211554	rs1128661	T	G	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:47,123:0.72:170
chr6	160211636	rs1128670	G	A	5588.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:126,255:0.67:381
chr6	160211645	rs58504486	GGTT	G	10102.73	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:129,251:0.66:380
chr6	160211697	rs9346795	C	T	8868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=5.163;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.474;QD=26.01;ReadPosRankSum=-0.570;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:119,222:0.65:341
chr6	160211700	rs9355278	C	G	8849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=5.173;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.477;QD=26.03;ReadPosRankSum=-0.540;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:119,221:0.65:340
chr6	160212268	rs4709371	G	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,48:0.76:63
chr6	160221279	rs71927633	GCGTGGGCAGCA	G	2040.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:11,51:0.82:62
chr6	160221475	rs733319	A	G	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.651;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:23,42:0.65:65
chr6	160221560	rs12211823	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr6	160224346	rs2146163	T	C	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:75,206:0.73:281
chr6	160225559	rs9364536	G	C	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:66,183:0.73:249
chr6	160226923	rs6910976	A	G	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:60,163:0.73:223
chr6	160234625	rs13220869	G	C	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:342,154:0.31:496
chr6	160237172	.	G	GCCACACCCCTCCCCACCCACCCGCCACACCCCTCCCCTCCCCCCCACCTCCCCCTGCCCCACCCACACCCCTCCCTGCCCCCCCACACCCCTCCCCGCCCC	1428.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=1.157;QD=25.07;ReadPosRankSum=6.023;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:22,35:0.61:57
chr6	160237192	.	C	G	976	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=6;HapScore=1;MGOF=33;MMLQ=24;MQ=57.35;NF=0;NR=26;PP=976;QD=38.8758158672;SC=TCCCCACCCCCCCACACCCCT;SbPval=1.0;Source=Platypus;TC=27;TCF=0;TCR=27;TR=26;WE=160237200;WS=160237178;set=Platypus	GT:AD:AF:DP	1/0:1,26:0.96:27
chr6	160237662	.	C	CTT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.420;QD=3.81;ReadPosRankSum=0.898;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	160241440	rs7775650	G	C	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:37,90:0.71:127
chr6	160450401	rs57359755	CT	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.796;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr6	160453561	rs4709390	T	G	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.158;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:158,56:0.26:214
chr6	160453978	rs1570070	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,29:0.32:90
chr6	160461793	rs8191774	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-1.337;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr6	160464289	rs894817	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.307;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:148,43:0.23:191
chr6	160465486	rs66749494	TTGTC	T	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.011;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr6	160465753	rs609207	T	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.959;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr6	160468278	rs998075	A	G	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.774;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:280,85:0.23:365
chr6	160468383	rs998074	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:77,24:0.24:101
chr6	160479789	rs8191832	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr6	160479882	rs2274849	G	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.261;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:95,27:0.22:122
chr6	160481537	rs7746102	T	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:128,52:0.29:180
chr6	160486083	rs8191863	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr6	160489215	rs8191867	CAG	C	2494.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:160,73:0.31:233
chr6	160494409	rs629849	A	G	15940.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr6	160494555	.	C	T	2173.77	.	AC=1;AF=0.500;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	0/1:36,86:0.70:122
chr6	160494882	rs139703298	G	T	8918.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:204,416:0.67:620
chr6	160505199	rs614754	C	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	160505252	rs8191915	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr6	160511250	rs1050026	T	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr6	160543148	rs12208357	C	T	5675.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:93,245:0.72:338
chr6	160543562	rs461473	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	160551204	rs683369	G	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:134,63:0.32:197
chr6	160560845	rs628031	A	G	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:231,120:0.34:351
chr6	160560897	rs113569197	CTGGTAAGT	C	2488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=0.765;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:194,74:0.28:268
chr6	160575985	rs2297374	C	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr6	160645832	rs316003	C	T	12553.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr6	160645921	rs3219197	C	CT	2896.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:3,123:0.98:126
chr6	160663230	rs17588242	T	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.433;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr6	160666660	rs11422119	A	AC	2535.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	160670282	rs316019	A	C	9812.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,359:1.00:360
chr6	160670494	rs316018	A	G	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	160670533	rs316017	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	160671500	rs316016	T	C	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	160677614	rs2774230	G	C	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	160679400	rs624249	C	A	2568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.840;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=1.095;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:389,150:0.28:539
chr6	160769423	rs555754	G	A	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:14,61:0.81:75
chr6	160858188	rs2292334	G	A	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:41,103:0.72:144
chr6	160868668	rs3918286	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	160868687	rs3918287	GC	G	58.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr6	160868701	rs2457574	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr6	160872151	rs1810126	C	T	4278.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:78,187:0.71:265
chr6	160952838	rs3124784	G	A	9693.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:4,347:0.99:351
chr6	160953035	rs3127596	A	G	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	160969629	rs1801693	A	G	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;QD=25.80;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	160969738	rs10755578	C	G	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	161006084	rs76144756	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr6	161006172	rs41272110	T	G	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:171,78:0.31:249
chr6	161007360	rs9365178	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr6	161007496	rs7765781	G	C	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr6	161007538	rs7765803	G	C	6090.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr6	161010766	rs7453899	A	T	6172.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.61;ReadPosRankSum=0.897;SOR=0.289;set=HC	GT:AD:AF:DP	1/1:1,231:1.00:232
chr6	161097590	rs12525588	A	T	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-0.157;QD=3.13;ReadPosRankSum=-0.100;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:131,39:0.23:170
chr6	161137779	rs14224	T	C	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.505;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:246,76:0.24:322
chr6	161139480	rs1130656	C	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:94,37:0.28:131
chr6	161139502	rs2295368	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:65,25:0.28:90
chr6	161152905	rs4252129	C	T	6043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.568;QD=16.65;ReadPosRankSum=-0.748;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:87,276:0.76:363
chr6	161160083	rs2859879	G	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.922;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:95,27:0.22:122
chr6	161162406	rs4252170	T	C	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:135,237:0.64:372
chr6	161173946	rs11060	T	G	6798.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	161469455	rs9346846	T	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	161469774	rs4559074	G	A	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr6	161502094	rs9347479	C	T	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	161509003	rs9355332	T	A	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	161517964	rs2177587	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	161519350	.	CCTGCTG	C,CCTG	9233.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=452;set=Intersection	GT:AF:DP	1/2:0.08,0.90:375
chr6	161531006	rs4709493	G	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	161532855	rs35961625	CT	C	11115.73	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr6	161557703	rs6455706	A	G	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	161586754	rs112552218	GA	G	671.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=1.025;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr6	161586840	rs729986	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr6	161771361	rs74497568	T	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,102:0.68:149
chr6	161807855	rs1801582	C	G	7919.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:163,351:0.68:514
chr6	161970150	rs111859679	ATGTGTG	A	962.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.363;QD=10.35;ReadPosRankSum=1.470;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:64,29:0.31:93
chr6	161990339	rs10945756	G	A	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:194,91:0.32:285
chr6	161990483	rs3765474	C	T	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:175,91:0.34:266
chr6	161990516	rs3765475	G	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:117,61:0.34:178
chr6	162137099	rs112078090	CATCTT	C	2897.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:44,74:0.63:118
chr6	162137147	rs77332950	C	T	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:31,84:0.73:115
chr6	162622304	rs4709583	A	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	162683814	.	TA	T	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=5.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.483;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr6	162864317	rs2075923	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,27:0.84:32
chr6	162992348	rs79555231	C	T	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.71;ReadPosRankSum=-0.542;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr6	162992355	rs67519540	CAA	C	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.88;ReadPosRankSum=-0.542;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr6	163587146	rs1124951	C	G	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	163587308	rs12198808	A	G	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-1.290;QD=3.54;ReadPosRankSum=0.239;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:188,62:0.25:250
chr6	163587312	rs3064931	CAAA	C	6897.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:60,172:0.74:232
chr6	163600225	rs742956	C	A	3061.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:60,137:0.70:197
chr6	163611793	rs6907521	C	T	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	163612152	rs6908111	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr6	163612783	rs6937392	C	A	21870.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:1,809:1.00:810
chr6	163836175	.	CCGG	C	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=5.220;QD=0.97;ReadPosRankSum=-1.291;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:161,18:0.10:179
chr6	163836376	rs2757578	C	T	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.332;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:194,58:0.23:252
chr6	163837086	rs4055815	TGGGG	T	710.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.617;QD=33.84;ReadPosRankSum=1.328;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr6	164891969	rs75907516	T	TTTC	3460.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:49,92:0.65:141
chr6	164892060	rs200184425	CCCTT	C	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=39.71;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	164962972	.	TA	T	47	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=6;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=47;QD=26.0;SC=GATTTAAGTATAAAAATATAT;SbPval=0.27;Source=Platypus;TC=10;TCF=1;TCR=9;TR=3;WE=164962980;WS=164962962;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr6	165108670	rs13191120	C	T	13475.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr6	165108725	rs13220455	G	A	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	165693624	rs1413100	C	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	165694945	rs1333501	C	G	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	165703633	rs5881641	CA	C	520.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	165715542	rs143539145	C	T	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.549;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:187,69:0.27:256
chr6	165863695	rs57550533	C	CA	8671.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr6	165989776	rs1410479	C	T	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr6	166075362	rs6456003	G	T	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	166307718	rs6456029	T	C	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	166308090	rs2140232	AT	TC	11687.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	166401464	rs371673740	CGT	C	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.439;QD=1.79;ReadPosRankSum=0.873;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:119,23:0.16:142
chr6	166401512	rs697475	T	A	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr6	166571935	rs35819705	C	T	4092.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:59,176:0.75:235
chr6	166571969	.	G	A	1694.77	.	AC=1;AF=0.500;AN=2;DP=189;set=Intersection	GT:AD:AF:DP	0/1:105,83:0.44:188
chr6	166572045	rs3127328	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.824;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=1.281;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr6	166574246	rs3127334	G	A	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	166574308	rs3099267	T	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.276;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr6	166576161	rs2278678	T	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr6	166579270	rs2305089	C	T	2861.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:58,127:0.69:185
chr6	166580094	.	T	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.961;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=74.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=3.622;SOR=6.513;set=HC	GT:AD:AF:DP	0/1:176,57:0.24:233
chr6	166581147	rs3099266	T	C	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:41,77:0.65:118
chr6	166720806	rs911203	G	C	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=0.728;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:256,85:0.25:341
chr6	166721073	rs372264427	C	A	1635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.52;ReadPosRankSum=-0.976;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:12,64:0.84:76
chr6	166721211	rs13204594	G	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=1.735;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:123,21:0.15:144
chr6	166721224	rs7757150	C	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.621;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:123,24:0.16:147
chr6	166721424	rs13205770	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=9.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.418;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	166736235	rs35147403	CA	C	562.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.64;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	166736362	rs7088	C	T	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	166737980	rs4710041	G	A	13081.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr6	166739684	rs10806847	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	166741921	rs9459653	T	A	899.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	166743760	rs9348119	G	C	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	166755975	rs10862	T	C	25084.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,560:1.00:560
chr6	166755979	rs11168	A	C	25775.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,592:1.00:592
chr6	166796433	rs1546854	C	A	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr6	166826255	rs909631	G	A	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	166826304	rs760670	T	C	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	166827436	rs2235295	T	C	2943.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:54,136:0.72:190
chr6	166862136	rs7746519	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	166862233	rs2230730	T	C	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	166862431	rs6932660	A	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	166889160	rs2235278	A	G	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-1.236;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:71,25:0.26:96
chr6	166889281	rs4373344	T	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,41:0.35:116
chr6	166889331	rs3830731	CAG	C	977.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,29:0.32:91
chr6	166903962	rs2072832	C	T	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr6	166903983	rs2072831	C	T	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.35;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	166903983	.	CGGAC	TGGAA,TGGAC	434	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=9;MMLQ=28;MQ=60.0;NF=11,35;NR=3,10;PP=167,434;QD=15.7477053473;SC=CTGCTACTGGCGGACGAGCGC;SbPval=0.62;Source=Platypus;TC=45;TCF=35;TCR=10;TR=14,45;WE=166903995;WS=166903973;set=Platypus	GT:AF:DP	0/1:0.31:45
chr6	166903987	rs2072830	C	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-1.240;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr6	166912062	rs2230732	C	T	4716.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:118,211:0.64:329
chr6	166912157	rs6923965	C	T	6284.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:210,292:0.58:502
chr6	166912195	rs6456090	A	C	9122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=5.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.15;ReadPosRankSum=-0.263;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:154,240:0.61:394
chr6	166912199	rs6908029	T	G	8889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=4.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.56;ReadPosRankSum=0.406;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:145,217:0.60:362
chr6	166912284	rs6908214	T	C	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:51,72:0.59:123
chr6	166918128	rs192353643	C	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.669;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr6	166922813	rs3799670	T	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:151,74:0.33:225
chr6	166952264	rs1003857	G	A	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	167271711	rs943687	T	C	11322.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=0.449;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:2,433:1.00:435
chr6	167271716	rs9347162	T	C	19403.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr6	167360104	rs2236312	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	167360389	rs2236313	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	167417312	.	A	AT	283.73	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr6	167435747	rs10624685	A	AACAC,AAC	515.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	0/1:0.75:16
chr6	167447337	.	AT	A	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=2.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.131;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:93,45:0.33:138
chr6	167453519	rs368396376	A	AT	1852.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=1.508;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:33,117:0.78:150
chr6	167550042	rs2071171	C	T	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr6	167571048	rs6902566	T	C	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	167590454	rs71571482	G	A	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.33;QD=27.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	167590541	rs3737098	G	A	3168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.80;MQRankSum=-5.445;QD=9.60;ReadPosRankSum=-0.074;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:161,169:0.51:330
chr6	167590574	rs2989541	G	C	6011.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.53;QD=25.91;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	167591954	rs200583385	G	A	2124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=47.66;MQRankSum=-7.139;QD=8.89;ReadPosRankSum=2.524;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:128,111:0.46:239
chr6	167592464	rs60509455	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	167592524	rs2989545	T	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:26,64:0.71:90
chr6	167592576	rs60976240	G	A	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:35,94:0.73:129
chr6	167592656	rs4710193	G	C	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	167595183	rs377058325	T	C	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.16;QD=30.07;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	167595449	rs139049693	A	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.10;QD=29.58;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	167622070	rs671511	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.22;QD=24.34;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	167622105	rs28661326	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.306;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-5.186;QD=0.72;ReadPosRankSum=-1.713;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:55,9:0.14:64
chr6	167622146	rs200471567	C	T	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:18,79:0.81:97
chr6	167622205	rs28588506	G	A	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	167704944	rs2076005	T	G	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=5.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-1.388;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:142,55:0.28:197
chr6	167719354	rs62438504	C	T	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.301;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:116,46:0.28:162
chr6	167719436	rs2072767	G	A	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-1.762;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:282,112:0.28:394
chr6	167728640	rs56251147	A	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr6	167728774	rs663606	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.438;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-7.805;QD=0.55;ReadPosRankSum=-0.531;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:151,21:0.12:172
chr6	167752312	.	G	GTTCCTTCC	1103.73	.	AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.81;QD=42.45;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	167771426	rs4616972	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	167772755	rs61091709	C	T	9345.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr6	167786551	rs146852129	T	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr6	167786750	rs143094588	C	A	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.676;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=4.071;MLEAC=1;MLEAF=0.500;MQ=52.83;MQRankSum=-12.990;QD=0.89;ReadPosRankSum=-3.313;SOR=1.187;set=HC	GT:AD:AF:DP	0/1:433,63:0.13:496
chr6	167786961	rs151165498	G	T	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.439;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-1.161;QD=11.69;ReadPosRankSum=-1.786;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:94,47:0.33:141
chr6	167786961	.	GGC	TGT	1777	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=24;MQ=52.58;NF=2;NR=39;PP=1777;QD=44.6455579235;SC=TAAGTCAGTGGGCGCGGCTGA;SbPval=0.91;Source=Platypus;TC=138;TCF=14;TCR=124;TR=41;WE=167786971;WS=167786951;set=Platypus	GT:AD:AF:DP	0/1:97,41:0.30:138
chr6	167786963	rs201342351	C	T	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.885;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-1.207;QD=11.86;ReadPosRankSum=-1.612;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:93,46:0.33:139
chr6	167789404	rs28409124	C	G	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	167789493	rs3010590	T	C	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	167789590	rs3010591	C	T	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.22;QD=29.05;SOR=1.917;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	167789622	rs60376002	G	A	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=14.599;MLEAC=1;MLEAF=0.500;MQ=45.03;MQRankSum=-1.572;QD=18.32;ReadPosRankSum=-0.816;SOR=2.566;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr6	167791524	rs17855200	C	T	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=43.69;MQRankSum=-0.630;QD=12.93;ReadPosRankSum=0.249;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr6	167791530	rs17855837	G	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.29;QD=45.24;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	167791549	rs3010594	T	G	469.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.41;MQRankSum=1.761;QD=26.10;ReadPosRankSum=-0.488;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr6	167796182	rs62428311	C	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	167796309	rs17855834	C	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.75;QD=43.53;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	167796319	rs17855833	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.71;QD=42.78;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	167796415	rs9457321	A	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	167907609	.	T	TAC	1318.73	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	167907677	.	T	TACACACAC,TACACAC	2997.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=70;set=Intersection	GT:AF:DP	1/1:1.00:66
chr6	168228026	rs201871553	T	TC	271.74	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	168265102	rs2301530	A	G	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	168344888	.	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.807;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr6	168482110	rs4708429	C	T	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:116,71:0.38:187
chr6	168482351	rs78336212	C	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	168694594	rs7764061	C	T	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	168694788	rs56060091	C	G	6597.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	168695255	.	GTGTATATA	G,GTA	472.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=28;set=Intersection	GT:AF:DP	1/2:0.45,0.55:22
chr6	168695309	rs4708710	C	T	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	168695345	rs4708711	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	168708045	rs12530360	T	C	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr6	168708751	rs10945499	A	G	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:31,83:0.73:114
chr6	168708793	rs10945500	C	G	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,112:0.70:161
chr6	168708816	rs10945501	T	G	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:69,154:0.69:223
chr6	168709147	rs41266321	G	A	6765.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:119,279:0.70:398
chr6	168709385	rs6925614	T	C	15886.77	.	AC=1;AF=0.500;AN=2;DB;DP=1063;set=Intersection	GT:AD:AF:DP	0/1:368,687:0.65:1055
chr6	168711107	rs111574499	G	A	4659.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:94,212:0.69:306
chr6	168711170	rs1551988	A	G	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:57,137:0.71:194
chr6	168719924	rs4292501	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=0.138;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr6	168719980	.	C	G	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-0.635;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:23,46:0.67:69
chr6	168720351	.	C	T	98.77	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	168720359	.	G	A	58	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=4;MGOF=0;MMLQ=24;MQ=60.0;NF=1;NR=1;PP=58;QD=46.3856062736;SC=AGCGGCGCCGGAGGCCCAGCG;SbPval=0.36;Source=Platypus;TC=5;TCF=1;TCR=4;TR=2;WE=168720367;WS=168720341;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr6	168764106	rs72353239	GGAGAGGGAGATT	G	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=0.000;QD=28.75;ReadPosRankSum=-0.085;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	168927213	rs12111003	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr6	168928225	rs2224209	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr6	168928251	rs2609287	C	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr6	168928363	.	C	T	658.77	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:86,36:0.30:122
chr6	168928519	rs2609286	C	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr6	169064933	rs2275919	T	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.900;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:148,67:0.31:215
chr6	169065126	rs9364271	G	A	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,54:0.61:88
chr6	169617726	rs8089	A	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	169617934	rs58423957	GA	G	660.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr6	169619815	rs10945402	C	T	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=2.323;QD=13.94;ReadPosRankSum=-0.365;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:42,67:0.61:109
chr6	169619933	rs113367461	T	TTTCCTTCC	2232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.35;MQRankSum=2.423;QD=15.83;ReadPosRankSum=0.867;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:40,101:0.72:141
chr6	169620247	rs9393165	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr6	169622263	rs6605530	G	A	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr6	169628169	rs33928942	CAA	C	793.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.401;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr6	169629783	rs6422747	G	A	2352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-1.460;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:48,102:0.68:150
chr6	169629910	rs6422748	G	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr6	169632305	rs145532758	AG	A	7382.73	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:75,235:0.76:310
chr6	169637456	rs9283850	G	A	6086.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:110,166:0.60:276
chr6	169637469	rs73043889	G	T	5480.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:100,137:0.58:237
chr6	169637519	rs9283851	C	T	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr6	169637911	rs9766678	G	A	4653.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:71,200:0.74:271
chr6	169646199	rs73046008	A	C	11380.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:255,492:0.66:747
chr6	169646409	rs73046010	A	G	5690.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:115,230:0.67:345
chr6	169648767	rs12178180	G	A	5701.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:79,250:0.76:329
chr6	170036309	rs7775504	A	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr6	170043646	rs9295020	A	G	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:45,88:0.66:133
chr6	170047695	rs75438963	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr6	170047902	rs61740334	T	A	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:33,103:0.76:136
chr6	170049421	rs4145868	T	G	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:41,93:0.69:134
chr6	170058206	rs6907814	G	A	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:62,101:0.62:163
chr6	170058374	rs3800544	C	T	6948.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:132,308:0.70:440
chr6	170060970	.	T	C	339	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=22;MQ=53.61;NF=0;NR=21;PP=339;QD=17.7986291689;SC=GAGTGGGGAGTGTGGGCGTTG;SbPval=1.0;Source=Platypus;TC=44;TCF=8;TCR=36;TR=21;WE=170060978;WS=170060960;set=Platypus	GT:AD:AF:DP	1/0:23,21:0.48:44
chr6	170061157	rs78941587	G	C	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,91:0.68:133
chr6	170065759	rs3839651	T	TA	2311.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr6	170067022	rs3800546	C	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr6	170068058	rs4509126	A	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr6	170068086	rs41265385	C	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr6	170068180	rs3823465	A	G	3079.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:74,133:0.64:207
chr6	170068420	rs79843499	A	G	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr6	170070723	rs4236176	A	G	6968.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:168,324:0.66:492
chr6	170102180	rs74900588	A	C	2863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=-0.437;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:70,135:0.66:205
chr6	170102267	rs4716383	A	G	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:61,137:0.69:198
chr6	170118085	rs7760142	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	170151766	rs3749882	C	T	2410.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,106:0.76:139
chr6	170155331	rs6459658	A	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr6	170159023	rs6459660	G	A	3232.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:65,135:0.68:200
chr6	170162537	rs11966349	C	T	6123.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:149,274:0.65:423
chr6	170176146	rs41265401	G	A	7265.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:131,326:0.71:457
chr6	170176407	rs4716398	G	A	4370.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:89,182:0.67:271
chr6	170176467	rs4716345	A	G	4848.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:98,199:0.67:297
chr6	170176647	rs4716399	CA	TG	7394.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;JOINED;set=Intersection	GT:AD:AF:DP	0/1:107,185:0.63:292
chr6	170176787	rs79997179	T	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr6	170179507	rs3828738	C	T	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr6	170190200	rs3807067	G	A	2149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.582;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.81;ReadPosRankSum=-1.690;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:34,102:0.75:136
chr6	170190418	rs3823467	T	G	3710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.873;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=6.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-1.352;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:80,164:0.67:244
chr6	170592042	rs200432216	C	T	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:40,135:0.77:175
chr6	170592293	rs2295205	C	G	4686.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:57,181:0.76:238
chr6	170594819	rs2255020	T	C	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	170595430	rs2747757	G	C	7191.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr6	170597276	rs2738822	C	T	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	170598227	rs2747756	T	G	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	170598352	rs2738821	C	T	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	170598368	rs67433119	TCTC	T	4758.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	170627651	rs9460113	G	A	18708.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.606;ClippingRankSum=0.000;DB;DP=1349;ExcessHet=3.0103;FS=3.093;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=2.672;QD=17.31;ReadPosRankSum=18.750;SOR=0.469;set=HC	GT:AD:AF:DP	1/1:237,844:0.78:1081
chr6	170704444	rs7738466	C	A	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	170845354	rs9348278	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr6	170858045	rs2076319	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-1.955;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr6	170858228	rs17860777	C	T	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=5.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.093;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:112,56:0.33:168
chr6	170862051	rs4710839	G	C	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=0.025;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr6	170862300	rs12717	G	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:158,71:0.31:229
chr6	170871013	rs201732168	A	ACAG	623.73	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:110,38:0.26:148
chr6	170871037	rs71815788	GCAA	G	2367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=3.521;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.908;QD=13.23;ReadPosRankSum=4.095;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:82,97:0.54:179
chr6	170871049	.	G	GCAA	1374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=7.370;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.781;QD=6.74;ReadPosRankSum=4.642;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:128,76:0.37:204
chr6	170878793	rs1042327	T	C	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-1.374;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:165,52:0.24:217
chr6	170878886	rs2235506	A	G	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:22,67:0.75:89
chr6	170886531	rs8770	T	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr6	170887693	rs3173219	G	C	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.868;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr6	170888208	rs960744	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr6	170888220	rs17860827	C	CT	309.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr6	170892100	rs9295417	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	170892444	rs370825740	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-2.221;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr6	170892483	rs17860837	A	AT	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.407;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=10.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.580;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:99,21:0.17:120
chr6	170892848	rs4140615	A	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:66,23:0.26:89
chr6	170892919	rs113114915	T	TACTC	340.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr6	170892932	.	AAAG	A	319.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr6	170893364	rs4140616	C	T	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr7	295683	rs36173688	T	TG	1288.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr7	296557	rs36164325	T	C	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:81,67:0.45:148
chr7	296739	rs36156504	G	A	3659.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:307,193:0.39:500
chr7	299558	.	T	TTCTC	918.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr7	299642	rs36156024	G	A	2257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=7.45;ReadPosRankSum=0.199;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:181,122:0.40:303
chr7	299850	rs36170987	G	T	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:236,118:0.33:354
chr7	299881	rs36139924	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:203,108:0.35:311
chr7	299976	rs36173075	G	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:84,44:0.34:128
chr7	299987	rs36138803	C	G	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr7	330822	rs36180337	A	C	22112.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:0,839:1.00:839
chr7	330882	rs4077171	T	G	14933.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=2.861;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr7	330882	.	TCA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=24;MQ=59.99;NF=55;NR=239;PP=2947;QD=20;SC=CGCGGCGGCTTCAGGGAGGTC;SbPval=0.57;Source=Platypus;TC=314;TCF=61;TCR=253;TR=294;WE=330892;WS=330872;set=Platypus	GT:AD:AF:DP	1/1:20,294:0.94:314
chr7	330884	rs4077172	A	G	14933.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.38;SOR=2.937;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr7	331086	rs36129019	G	A	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	331427	rs141537626	C	A	21821.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:2,805:1.00:807
chr7	540741	rs1800814	G	A	28240.77	.	AC=2;AF=1.00;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	1/1:0,1036:1.00:1036
chr7	550399	rs192632660	A	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=38.98;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	550409	rs183980841	G	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=38.78;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	550737	rs62433334	G	C	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	551946	rs9692018	T	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr7	552046	rs1129401	A	G	4750.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:188,234:0.55:422
chr7	591096	rs78260651	G	A	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:56,91:0.62:147
chr7	591125	rs71518309	C	G	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	618855	rs62431411	T	C	8665.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:275,399:0.59:674
chr7	618869	rs62431412	G	A	10095.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:312,469:0.60:781
chr7	618938	rs3211362	A	G	10746.77	.	AC=1;AF=0.500;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	0/1:363,508:0.58:871
chr7	624221	rs9330368	T	G	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:263,109:0.29:372
chr7	624344	rs9330367	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:84,56:0.40:140
chr7	624366	rs13221342	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr7	624401	rs9330366	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr7	646934	.	G	A	771.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr7	772025	rs4072597	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr7	772174	rs4724987	G	A	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:160,190:0.54:350
chr7	780687	rs62432212	T	C	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	780859	rs6943174	T	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr7	780980	rs6943337	T	G	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:53,92:0.63:145
chr7	794471	rs34761279	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:67,88:0.57:155
chr7	794576	rs62432239	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr7	801634	rs142752861	T	TTGAGCCCCAGGCCTCAAACATGTC	1378.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr7	803342	rs4495324	G	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chr7	808588	rs6973614	C	T	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr7	808749	rs62432865	C	T	7310.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:246,338:0.58:584
chr7	808810	rs6946758	C	G	7759.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:268,350:0.57:618
chr7	810219	rs4720951	T	C	6678.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:198,312:0.61:510
chr7	813618	rs4719279	T	C	12594.77	.	AC=1;AF=0.500;AN=2;DB;DP=993;set=Intersection	GT:AD:AF:DP	0/1:424,561:0.57:985
chr7	813650	rs62432869	G	A	17437.77	.	AC=1;AF=0.500;AN=2;DB;DP=1423;set=Intersection	GT:AD:AF:DP	0/1:610,805:0.57:1415
chr7	813867	rs6973746	C	G	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:101,151:0.60:252
chr7	814612	rs34943122	G	A	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr7	814788	rs3922641	G	A	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:103,145:0.58:248
chr7	821798	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=3;HapScore=1;MGOF=14;MMLQ=18;MQ=57.23;NF=155;NR=110;PP=2962;QD=20;SC=CGGATCTTCGCGGCGTGGCCG;SbPval=0.51;Source=Platypus;TC=399;TCF=236;TCR=163;TR=265;WE=821806;WS=821788;set=Platypus	GT:AD:AF:DP	0/1:134,265:0.66:399
chr7	822523	rs4719314	A	G	11149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.824;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.229;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:381,495:0.57:876
chr7	825114	rs67721251	T	C	6493.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:185,288:0.61:473
chr7	855838	rs112489330	C	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.682;QD=4.65;ReadPosRankSum=0.095;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr7	856320	rs6959154	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr7	857352	rs4275123	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr7	872100	rs6952577	T	C	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:286,204:0.42:490
chr7	881668	rs6461378	C	T	10859.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:318,492:0.61:810
chr7	882829	rs34925195	GT	G	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=7.613;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=6.65;ReadPosRankSum=0.083;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr7	882895	rs6970511	C	G	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:56,83:0.60:139
chr7	889858	rs34398649	C	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr7	890978	rs7792674	T	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr7	891184	rs10628483	C	CGAT	8047.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	894422	rs10245785	T	C	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:132,97:0.42:229
chr7	895928	rs12534606	A	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:116,93:0.44:209
chr7	896142	rs4721834	C	T	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:173,115:0.40:288
chr7	897492	rs10950789	A	G	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:210,138:0.40:348
chr7	899710	rs12700166	A	C	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:84,145:0.63:229
chr7	900035	rs4276575	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,55:0.42:131
chr7	905786	rs4721952	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr7	909170	rs202146795	G	A	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:50,111:0.69:161
chr7	912755	rs4722034	C	T	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	916534	rs150362623	C	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr7	918211	rs72423165	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.598;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr7	925717	rs11543222	G	A	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:238,135:0.36:373
chr7	925949	rs10226357	A	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	926077	rs10267796	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	926827	rs4722203	T	C	15464.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr7	931876	rs141243318	C	T	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:113,68:0.38:181
chr7	933234	rs35157448	T	A	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	933240	rs34784960	C	CGGT	2587.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	939630	rs34786986	G	A	4867.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:376,244:0.39:620
chr7	940181	rs10256887	C	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:78,85:0.52:163
chr7	940258	rs113839920	G	GGGCAAAGGCA	3585.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:81,90:0.53:171
chr7	940267	rs3824079	T	C	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:81,92:0.53:173
chr7	940298	rs13224354	C	G	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr7	940501	rs72074799	AGAAGGGCC	A	2089.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:27,53:0.66:80
chr7	940520	.	A	AGGGCCGAAGGGCC	583.73	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:74,21:0.22:95
chr7	940724	rs11765973	G	A	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:57,74:0.56:131
chr7	943711	rs10282526	T	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=0.394;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr7	943998	rs3824077	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr7	944608	rs146912737	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr7	944683	rs1881121	C	T	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	944993	.	CAGGGAAAGGGAA	C,CAGGGAA	672.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=7.499;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=-0.154;QD=29.25;ReadPosRankSum=-2.247;SOR=0.929;set=HC	GT:AD:AF:DP	1/2:2,15,6:0.65,0.26:23
chr7	959692	rs6962883	G	A	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:121,105:0.46:226
chr7	960705	rs10250309	T	C	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	966926	rs3824074	G	C	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	974905	rs71538121	A	G	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:45,78:0.63:123
chr7	1015021	rs3735678	C	T	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:158,109:0.41:267
chr7	1023013	rs2272375	C	T	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	1023052	rs75358992	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	1023995	rs34743661	A	AG	7628.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	1024002	rs3735689	T	C	7977.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	1024581	rs3824081	T	C	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	1024855	rs3735684	G	A	11180.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:253,511:0.67:764
chr7	1026520	rs62433130	C	T	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:143,100:0.41:243
chr7	1026546	rs139443941	C	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:93,65:0.41:158
chr7	1040037	.	GGACGTGCCTGCCCCGCCGTGCACAGACCTCAGCCCCCAGGA	G	8295.73	.	AC=2;AF=1.00;AN=2;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	1062527	rs3735686	G	A	18924.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.23;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,495:1.00:495
chr7	1062527	.	GC	AC,AT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=59.99;NF=211,134;NR=249,159;PP=1605,2944;QD=3.56472002728;SC=GCTACAAAGCGCGGCGACGTC;SbPval=0.53;Source=Platypus;TC=463;TCF=212;TCR=251;TR=460,293;WE=1062536;WS=1062517;set=Platypus	GT:AF:DP	0/1:0.99:463
chr7	1062528	rs1057561	C	T	7080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=0.492;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:170,319:0.65:489
chr7	1068186	rs115018039	G	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	1094819	rs4720335	G	A	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr7	1097952	rs6953080	C	T	11683.77	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:357,526:0.60:883
chr7	1131356	rs3802141	T	C	22234.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:0,811:1.00:811
chr7	1131394	rs34497267	G	A	9390.77	.	AC=1;AF=0.500;AN=2;DB;DP=1061;set=Intersection	GT:AD:AF:DP	0/1:595,461:0.44:1056
chr7	1131411	rs11544331	C	T	13967.77	.	AC=1;AF=0.500;AN=2;DB;DP=1125;set=Intersection	GT:AD:AF:DP	0/1:504,616:0.55:1120
chr7	1132153	rs3808352	G	A	4777.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:420,230:0.35:650
chr7	1132456	rs10246354	C	T	11939.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:308,498:0.62:806
chr7	1132505	rs2070118	G	A	10070.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:284,433:0.60:717
chr7	1132671	rs4266553	C	G	6649.77	.	AC=1;AF=0.500;AN=2;DB;DP=1064;set=Intersection	GT:AD:AF:DP	0/1:706,356:0.34:1062
chr7	1132748	rs10235056	G	A	15438.77	.	AC=1;AF=0.500;AN=2;DB;DP=991;set=Intersection	GT:AD:AF:DP	0/1:311,676:0.68:987
chr7	1133171	rs3808354	G	T	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:198,148:0.43:346
chr7	1133305	rs1133043	C	G	10251.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr7	1197994	rs12702435	T	C	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr7	1276304	.	G	A	597.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr7	1474621	.	GC	CC	1260	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=13;HapScore=4;MGOF=20;MMLQ=6;MQ=54.48;NF=37,18;NR=0,27;PP=1260,761;QD=34.9938165553;SC=CCCGATACCCGCCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=103;TCF=56;TCR=47;TR=37,45;WE=1474640;WS=1474605;set=Platypus	GT:AD:AF:DP	0/1:66,37:0.36:103
chr7	1474621	rs145154210	GC	G	599.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr7	1474632	.	A	C	1700	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=15;HapScore=4;MGOF=20;MMLQ=22;MQ=55.46;NF=46;NR=0;PP=1700;QD=37.7124176641;SC=CCCCCCCCCCACCCCCAGCTG;SbPval=1.0;Source=Platypus;TC=127;TCF=68;TCR=59;TR=46;WE=1474640;WS=1474605;set=Platypus	GT:AD:AF:DP	0/1:81,46:0.36:127
chr7	1481919	rs4236408	C	A	21085.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,764:1.00:764
chr7	1482009	rs61744261	G	C	8004.77	.	AC=1;AF=0.500;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	0/1:635,402:0.39:1037
chr7	1482101	rs12540098	C	G	5222.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:456,265:0.37:721
chr7	1482134	rs4457225	C	G	12715.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr7	1484572	rs10435184	A	G	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	1510156	.	G	A	1164.77	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:88,61:0.41:149
chr7	1516129	.	G	GCCTCTCCCGGATGGGCCACCC	14273.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.31;MQRankSum=1.171;QD=38.37;ReadPosRankSum=-1.982;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:9,363:0.98:372
chr7	1517700	rs10265526	A	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	1518336	rs11977356	G	A	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	1519011	rs56975547	G	A	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	1519358	.	GAGA	G	87.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.477;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:70,8:0.10:78
chr7	1519361	rs9692164	A	G	1647.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.13;ReadPosRankSum=-1.352;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:8,70:0.90:78
chr7	1519892	rs4546558	C	G	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	1519946	rs7783971	A	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	1522157	rs10227674	T	C	13510.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	1522175	rs10224038	A	G	16061.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr7	1523559	rs10235180	T	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	1523956	rs11972722	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	1526181	rs6969991	G	A	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	1526456	rs62435333	C	T	7148.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	1527687	rs10279407	C	T	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	1527735	rs10267772	G	A	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	1528947	.	T	TCCCGGGCCCGCCGAGGGGACGTGCGCACTCACTTCAGGCCCTGCTCCCAGC	7230.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.37;MQRankSum=0.744;QD=52.78;ReadPosRankSum=0.544;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:7,130:0.95:137
chr7	1529201	rs4425657	G	A	16334.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,602:1.00:602
chr7	1529427	rs4380839	C	A	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	1532631	rs10229645	G	A	11510.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:3,438:0.99:441
chr7	1533513	rs2251226	A	G	9733.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr7	1533556	rs2251231	T	C	11815.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.03;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	1533566	rs2251232	A	G	11267.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr7	1534425	rs752791	A	G	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	1534593	rs752792	C	A	6179.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr7	1535051	rs892530	A	G	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	1536717	rs3735660	T	C	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr7	1538539	rs57092311	A	G	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	1538595	rs2289034	C	A	1442.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=7.924;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.27;ReadPosRankSum=0.570;SOR=3.344;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr7	1538614	rs2289035	G	A	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	1538877	rs750005	A	G	15940.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr7	1539799	rs2304357	C	T	10926.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	1540049	rs2304358	A	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	1542697	rs3752714	G	A	12649.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr7	1542814	rs3752715	T	C	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	1543476	rs145605530	T	TCCCCAAAGAC	14165.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.090;QD=49.36;ReadPosRankSum=-0.652;SOR=4.429;set=HC	GT:AD:AF:DP	1/1:1,286:1.00:287
chr7	1543981	rs1369011	C	A	11455.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:2,425:1.00:427
chr7	1544128	rs2278460	G	T	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	1574403	rs4720833	A	G	21008.77	.	AC=2;AF=1.00;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	1/1:0,791:1.00:791
chr7	1574562	rs4720834	T	C	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	1586600	rs751413	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr7	1586653	rs112463195	A	AGCC	3522.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr7	1586662	rs3779607	T	C	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr7	1586866	rs3824072	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr7	1588391	rs3814481	A	G	9594.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:1,357:1.00:358
chr7	1588549	rs3814482	G	A	8527.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	1588768	rs1124871	G	A	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	1588912	rs3890492	C	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	1589056	rs4294092	G	A	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	1589083	rs1865348	G	A	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	1589417	rs10237660	T	G	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	1590368	rs6463921	A	G	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=1.674;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	1590376	rs2304360	T	C	9111.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=1.491;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	1590443	rs2304361	T	C	12527.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr7	1595068	rs17852421	G	A	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=1.972;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:43,80:0.65:123
chr7	1627632	rs7800178	T	C	16905.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr7	1657733	rs4720871	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=1.971;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr7	1657844	rs10225166	A	C	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	1657923	rs12702990	T	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	1703082	rs144374574	T	TG	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.269;SOR=2.173;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr7	1733102	rs4720922	G	T	9410.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr7	1785120	rs202182712	C	T	12720.77	.	AC=1;AF=0.500;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	0/1:340,546:0.62:886
chr7	1785738	rs61236605	G	A	7061.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:205,318:0.61:523
chr7	1878377	rs3889573	A	G	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	1878453	rs1078112	T	A	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:211,122:0.37:333
chr7	1886865	rs6954521	C	A	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=-0.636;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:91,41:0.31:132
chr7	1886872	rs6978048	T	G	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-2.503;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:101,55:0.35:156
chr7	1886937	rs6954673	C	T	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:188,101:0.35:289
chr7	1887362	rs6957894	G	A	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:314,214:0.41:528
chr7	1888185	rs59248873	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	1888294	rs4719320	C	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:100,67:0.40:167
chr7	1888683	.	TACACACACAC	T	2997	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=24;MQ=60.0;NF=5;NR=67;PP=2997;QD=20;SC=GGTGTACATGTACACACACAC;SbPval=0.75;Source=Platypus;TC=210;TCF=19;TCR=191;TR=72;WE=1888702;WS=1888673;set=Platypus	GT:AD:AF:DP	1/0:138,72:0.34:210
chr7	1894022	rs12699404	A	T	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:368,222:0.38:590
chr7	1894116	rs7810038	T	C	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-1.922;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:211,108:0.34:319
chr7	1976263	rs2280552	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr7	1976457	rs1801368	C	T	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:324,171:0.35:495
chr7	1976556	rs2280550	G	A	5590.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:519,302:0.37:821
chr7	1976635	rs2280549	G	A	6658.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:159,275:0.63:434
chr7	2041638	rs1107591	G	A	4337.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:321,221:0.41:542
chr7	2041887	rs4721296	A	C	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	2119174	rs7805774	C	T	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	2257612	rs6951493	G	A	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	2258899	rs1639916	G	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	2260715	rs1639917	G	T	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	2262429	rs144195184	C	G	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr7	2269552	rs1637728	G	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	2278577	rs59385624	AG	A	1470.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	2278638	rs60173050	AT	A	3812.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.63;ReadPosRankSum=1.736;SOR=1.491;set=HC	GT:AD:AF:DP	1/1:1,106:0.99:107
chr7	2278640	.	ATATATATATATATATATATATAT	A	1805.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=3.992;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.55;ReadPosRankSum=-0.487;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:6,62:0.91:68
chr7	2279482	rs11984133	A	C	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	2279851	rs6962067	T	C	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	2281083	rs11382094	A	AT	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.155;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr7	2290314	rs12699806	C	T	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.93;QD=43.50;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	2290317	rs60298419	T	G	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.03;QD=48.80;SOR=1.848;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	2290319	rs373496719	TC	T	2655.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	2290328	rs10230814	C	T	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.35;QD=44.57;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	2290336	rs10249180	T	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.68;QD=44.19;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	2290372	rs10230822	C	T	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	2292881	rs3075440	C	CTG	11888.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	2296493	rs2302070	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	2297006	rs6888	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	2303109	rs2286207	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	2303986	rs2286206	T	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr7	2304191	rs2286205	A	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	2309158	rs375189373	TA	T	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=1.053;QD=1.56;ReadPosRankSum=-0.680;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:132,47:0.26:179
chr7	2314652	rs878534	G	A	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	2315008	rs2398667	G	C	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	2394428	rs112294325	C	CGCG	381.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	2394746	rs9690787	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	2394991	rs11551167	C	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	2406462	.	A	T	2561.77	.	AC=1;AF=0.500;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	0/1:60,107:0.64:167
chr7	2433729	rs11974910	C	A	3508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=-0.810;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:112,162:0.59:274
chr7	2434522	rs1978169	G	A	5174.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:102,230:0.69:332
chr7	2434594	.	ATT	A	471.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-1.672;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:23,27:0.54:50
chr7	2445583	.	C	T	990.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr7	2489311	rs11773261	C	G	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:172,129:0.43:301
chr7	2489335	rs111677862	CGTGTGTGCACCT	C	4656.73	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:229,129:0.36:358
chr7	2489382	rs11763749	A	G	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:265,148:0.36:413
chr7	2514788	rs61742185	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:108,56:0.34:164
chr7	2515382	rs5881927	G	GC	15138.73	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr7	2515539	rs146419451	G	A	4694.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:348,233:0.40:581
chr7	2552881	rs34637446	A	AGATG	4307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.576;QD=11.64;ReadPosRankSum=3.352;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:246,124:0.34:370
chr7	2582153	rs138295649	C	CCCCCAGCCTCCCGGGTGT	16987.73	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	2604767	rs71550361	AGT	A	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.041;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:141,17:0.11:158
chr7	2611878	rs2917751	T	C	11119.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:255,512:0.67:767
chr7	2612294	rs2969042	TC	AA	8924.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;JOINED;set=Intersection	GT:AD:AF:DP	0/1:153,224:0.59:377
chr7	2613042	rs2304540	G	C	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr7	2619363	rs377084597	G	GTGTGTC	3295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=2.365;MLEAC=1;MLEAF=0.500;MQ=61.22;MQRankSum=3.517;QD=18.31;ReadPosRankSum=0.764;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:65,115:0.64:180
chr7	2621567	rs7798469	T	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	2622101	rs1550204	C	T	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,79:0.68:117
chr7	2623362	rs199831221	C	T	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr7	2625838	rs2257285	C	T	3892.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:110,176:0.62:286
chr7	2626038	rs3217437	CCAGGGAATGG	C	1029.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr7	2627310	rs2917733	T	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr7	2632477	rs2917730	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr7	2632802	rs140094507	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr7	2640897	rs2969057	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr7	2640985	rs4506100	G	C	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:31,87:0.74:118
chr7	2644519	rs2293404	C	T	11507.77	.	AC=1;AF=0.500;AN=2;DB;DP=917;set=Intersection	GT:AD:AF:DP	0/1:360,551:0.60:911
chr7	2645526	rs10950797	G	A	4824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.248;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=1.690;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:124,231:0.65:355
chr7	2645552	rs2293407	A	G	4583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=1.573;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:124,224:0.64:348
chr7	2646723	rs1464967	A	G	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:118,191:0.62:309
chr7	2646950	rs1056568	T	G	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr7	2649673	rs3735108	T	C	7513.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:228,335:0.60:563
chr7	2649704	rs3735109	T	G	11102.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	0/1:342,523:0.60:865
chr7	2649819	rs3735110	C	T	12462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.106;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:362,574:0.61:936
chr7	2649932	rs3735111	T	G	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:84,104:0.55:188
chr7	2695718	rs199910535	C	T	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:109,101:0.48:210
chr7	2699524	rs139527284	ACT	A	1203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.616;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:325,81:0.20:406
chr7	2699687	rs56409742	C	CG	18624.73	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr7	2701234	.	G	A	10124.77	.	AC=1;AF=0.500;AN=2;DP=766;set=Intersection	GT:AD:AF:DP	0/1:296,468:0.61:764
chr7	2752152	rs798565	G	A	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:107,153:0.59:260
chr7	2752487	rs7776970	G	A	2779.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:187,143:0.43:330
chr7	2773035	rs34004158	C	CAT	7382.73	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:133,186:0.58:319
chr7	2802522	rs798488	T	C	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr7	2834869	rs2533886	C	T	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr7	2952886	rs1626708	C	T	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:201,155:0.44:356
chr7	2954801	rs1182157	T	C	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	2962753	rs2527509	G	A	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	2963120	rs17257217	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr7	2966445	rs1182136	T	G	10614.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:2,402:1.00:404
chr7	2968361	rs2527506	G	A	6109.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:201,270:0.57:471
chr7	2968486	rs1183431	G	C	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	2969680	rs1621509	G	A	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:203,108:0.35:311
chr7	2971977	rs5881948	T	TG	1324.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	2972072	rs1636167	A	G	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-1.447;QD=7.29;ReadPosRankSum=-0.037;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:102,71:0.41:173
chr7	2976767	rs6945582	G	A	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:374,217:0.37:591
chr7	2983958	rs147264763	T	C	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:374,220:0.37:594
chr7	2985361	rs3839716	GAC	G	833.84	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr7	3179968	rs7779230	T	G	19201.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr7	3179973	rs7791857	G	C	18858.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=1.135;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr7	3179991	rs7779245	T	C	9888.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr7	3180550	rs11374295	C	CT	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.804;QD=6.96;ReadPosRankSum=0.192;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr7	3180657	rs6964682	C	T	10465.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr7	3187085	rs6954885	T	A	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr7	3188513	rs7810868	C	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.685;SOR=1.546;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	3188549	rs10257432	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr7	3188576	rs10257447	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr7	3188712	rs10254519	A	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=1.637;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr7	3188738	rs34925290	G	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=1.412;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr7	3205581	rs7782623	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr7	3205635	rs7801306	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr7	3205705	rs10951088	T	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	3205763	rs10951089	A	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:72,33:0.31:105
chr7	3341390	rs10228086	T	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	3341615	rs10238520	G	A	127.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	3678800	.	C	G	3221.77	.	AC=1;AF=0.500;AN=2;DP=236;set=Intersection	GT:AD:AF:DP	0/1:95,140:0.60:235
chr7	3681870	.	A	C	831.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr7	4150203	rs62438179	G	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr7	4152863	rs6956409	G	C	13444.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr7	4153824	rs2141076	A	G	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:100,85:0.46:185
chr7	4171853	rs113599151	GT	G	30340.73	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:0,759:1.00:759
chr7	4185592	rs608271	A	G	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr7	4185636	rs6943463	G	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:90,49:0.35:139
chr7	4189075	rs659182	G	C	6046.77	.	AC=1;AF=0.500;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	0/1:465,312:0.40:777
chr7	4213749	rs4723444	T	A	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:71,44:0.38:115
chr7	4213877	rs601424	T	C	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:243,148:0.38:391
chr7	4213940	rs671756	T	C	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:201,106:0.35:307
chr7	4213975	rs671694	A	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:131,74:0.36:205
chr7	4214041	rs4723445	C	T	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=1.832;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:48,26:0.35:74
chr7	4214046	rs600537	T	C	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=2.020;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:41,24:0.37:65
chr7	4215298	rs4720185	T	C	3709.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:355,195:0.35:550
chr7	4217969	rs649494	T	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr7	4245643	rs142014896	C	T	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:325,200:0.38:525
chr7	4259953	rs13224192	G	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr7	4266963	rs80155066	C	T	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr7	4267072	rs597636	T	A	2372.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:54,113:0.68:167
chr7	4304727	rs10270413	A	G	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=0.863;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:130,78:0.38:208
chr7	4308129	.	C	A	368.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr7	4308362	rs8514	C	T	6518.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:158,291:0.65:449
chr7	4490854	rs314605	C	T	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	4490934	rs442775	A	G	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-2.348;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:70,67:0.49:137
chr7	4490934	.	AC	GT	615	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=15;MQ=60.0;NF=23;NR=28;PP=615;QD=13.1072132326;SC=GGTACCCTTGACGGAAATAGA;SbPval=0.59;Source=Platypus;TC=112;TCF=52;TCR=60;TR=51;WE=4490943;WS=4490924;set=Platypus	GT:AD:AF:DP	0/1:61,51:0.46:112
chr7	4490935	rs369198	C	T	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.22;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	4715012	.	G	GT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=2.511;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:117,30:0.20:147
chr7	4722377	rs146544261	G	A	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:91,116:0.56:207
chr7	4777070	rs77360178	CGT	C	2352.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:88,73:0.45:161
chr7	4780514	rs3087749	G	T	26610.77	.	AC=2;AF=1.00;AN=2;DB;DP=1002;set=Intersection	GT:AD:AF:DP	1/1:1,996:1.00:997
chr7	4802029	rs6976790	T	G	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.87;SOR=1.341;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	4802029	.	TGCTGTA	GGCCGTG,GGCTGTA	2495	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=12,48;NR=28,78;PP=1341,2495;QD=35.1116968716;SC=AGCCCAGTGGTGCTGTAACCA;SbPval=0.83;Source=Platypus;TC=126;TCF=48;TCR=78;TR=40,126;WE=4802043;WS=4802019;set=Platypus	GT:AF:DP	0/1:0.32:126
chr7	4802032	.	T	C	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=12.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=1.982;SOR=1.730;set=HC	GT:AD:AF:DP	0/1:78,47:0.38:125
chr7	4802035	rs1053753	A	G	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=10.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=1.788;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:75,47:0.39:122
chr7	4827096	rs112887769	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr7	4841470	rs414035	T	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	4845312	rs2306919	T	G	6165.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	4871879	rs3830494	C	CAT	15335.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr7	4874420	rs2292498	G	C	6121.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	4876057	rs3763384	C	T	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	4900095	rs1553960	A	G	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	4900341	rs17135247	G	A	27173.77	.	AC=2;AF=1.00;AN=2;DB;DP=998;set=Intersection	GT:AD:AF:DP	1/1:0,990:1.00:990
chr7	4901385	rs3750009	A	C	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr7	4901465	rs3833677	G	GCACGTCCCCCACCACCGCGACCTT	1219.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	4917861	rs140238998	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.822;QD=7.78;ReadPosRankSum=0.571;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr7	4946973	rs10951715	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr7	5026170	rs57714855	TA	T	890.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.956;MLEAC=2;MLEAF=1.000;MQ=43.71;MQRankSum=1.649;QD=17.13;ReadPosRankSum=-2.857;SOR=0.290;set=HC	GT:AD:AF:DP	1/1:5,47:0.90:52
chr7	5161512	rs117992329	G	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	5161640	rs62441986	G	C	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.74;QD=28.65;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	5161858	rs11289360	GA	G	2018.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.728;MLEAC=2;MLEAF=1.000;MQ=58.03;MQRankSum=-0.639;QD=15.07;ReadPosRankSum=-0.425;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:16,118:0.88:134
chr7	5166400	rs73318773	G	A	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	5166500	rs112252777	A	G	6133.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	5167160	rs9655048	C	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	5167408	rs888584	G	A	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	5254227	rs4587243	C	G	12365.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr7	5257490	rs7791896	T	C	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	5262385	rs4720537	G	A	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	5269424	rs7785898	A	C	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	5331307	rs12667188	A	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	5334469	rs4724524	G	T	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:135,76:0.36:211
chr7	5334472	rs10623123	C	CCT	1823.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:140,71:0.34:211
chr7	5334582	rs59119551	C	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:131,69:0.34:200
chr7	5336855	rs137903684	TCCCTTCTCTGTC	T	4991.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	5336885	rs13244318	C	T	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	5338714	rs6950111	T	C	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.092;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:52,73:0.58:125
chr7	5338770	rs6946155	A	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,63:0.54:117
chr7	5340002	rs34551990	C	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr7	5347295	rs7794563	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	5347749	rs9639976	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr7	5352659	rs138591330	G	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=5.926;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.920;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:77,63:0.45:140
chr7	5353449	rs191307109	G	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-1.150;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:39,29:0.43:68
chr7	5372406	rs13238738	G	T	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	5396715	rs35508364	T	C	25700.77	.	AC=2;AF=1.00;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	1/1:0,936:1.00:936
chr7	5396955	rs7805732	A	G	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	5415874	rs11766794	T	C	6022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=1.082;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:310,168:0.35:478
chr7	5415877	rs11769187	G	A	6083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.670;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:311,171:0.35:482
chr7	5427720	rs4724663	A	G	9872.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr7	5430283	rs67295626	G	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr7	5434135	rs4724668	A	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:45,72:0.62:117
chr7	5487458	rs4236392	T	C	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	5528883	rs4724701	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr7	5529758	rs28566736	G	A	7043.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:237,329:0.58:566
chr7	5529922	rs4077245	A	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr7	5530827	rs3801057	G	A	6591.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:232,303:0.57:535
chr7	5540769	rs6953642	A	C	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	5541657	rs4724704	G	A	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:66,134:0.67:200
chr7	5541759	rs200920217	G	GCTCCACCGGGAGGGAAGCT	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=61.37;MQRankSum=3.919;QD=8.51;ReadPosRankSum=-0.562;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	5545355	rs13245207	T	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.175;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=10.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-2.016;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr7	5567596	rs852424	C	T	4324.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:388,223:0.36:611
chr7	5568366	rs852423	A	G	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:307,157:0.34:464
chr7	5569327	rs2908425	G	A	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:132,68:0.34:200
chr7	5751250	rs3735289	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	5760860	rs2302907	G	A	5163.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:202,236:0.54:438
chr7	5760971	rs4720636	A	T	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	5779375	rs10233615	T	C	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	5800769	rs3857756	A	G	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	5880392	rs2240405	G	C	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:135,167:0.55:302
chr7	5886342	.	CA	C	118.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.802;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:25,23:0.48:48
chr7	5920377	rs56179236	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr7	5920394	rs201796201	T	TA,TAA	188.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=78;set=Intersection	GT:AF:DP	0/1:0.29:72
chr7	5920405	.	AT	A	548	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=10;HapScore=4;MGOF=9;MMLQ=23;MQ=57.12;NF=22;NR=4;PP=548;QD=21.4230769231;SC=AAAAAAAAAAATAATCTAGAC;SbPval=0.64;Source=Platypus;TC=89;TCF=74;TCR=15;TR=26;WE=5920414;WS=5920384;set=Platypus	GT:AD:AF:DP	1/1:63,26:0.29:89
chr7	5920406	rs10235465	T	A	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-1.203;QD=17.62;ReadPosRankSum=0.694;SOR=2.012;set=HC	GT:AD:AF:DP	0/1:13,62:0.83:75
chr7	5923682	rs7798766	G	C	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr7	5923738	rs3890913	A	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr7	5938326	rs117593220	C	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	5949770	rs3779101	G	A	6308.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:313,296:0.49:609
chr7	5949830	rs11771500	C	T	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:238,164:0.41:402
chr7	5958650	rs138701366	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.08;QD=25.30;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	5959485	rs200812052	G	A	4184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.658;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=21.241;MLEAC=1;MLEAF=0.500;MQ=47.11;MQRankSum=-5.497;QD=17.88;ReadPosRankSum=-1.680;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:53,181:0.77:234
chr7	5959661	rs199977794	C	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.29;QD=28.06;SOR=2.102;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	5965258	rs201118476	T	C	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-6.748;QD=4.56;ReadPosRankSum=0.863;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:194,79:0.29:273
chr7	5965381	rs377528346	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.18;MQRankSum=-2.539;QD=13.76;ReadPosRankSum=-0.396;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr7	5965398	rs201553072	G	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.48;MQRankSum=-3.363;QD=16.16;ReadPosRankSum=-1.103;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:14,22:0.61:36
chr7	5983012	rs150999559	A	G	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.41;QD=30.74;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	5983063	rs148485394	C	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=41.96;MQRankSum=1.180;QD=5.95;ReadPosRankSum=-0.696;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:91,44:0.33:135
chr7	5983195	rs138475267	C	A	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	5983470	rs375510070	G	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=47.38;MQRankSum=2.062;QD=10.09;ReadPosRankSum=0.859;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr7	5983553	rs80120223	A	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.24;QD=33.82;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	6005323	rs200962894	C	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=40.34;MQRankSum=-0.776;QD=18.60;ReadPosRankSum=-0.092;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr7	6017189	.	T	C	32.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=16.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	6026775	rs2228006	T	C	3472.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:236,167:0.41:403
chr7	6026988	rs1805321	G	A	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:275,183:0.40:458
chr7	6031804	.	G	GT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=4.293;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.145;QD=0.69;ReadPosRankSum=1.349;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:109,26:0.19:135
chr7	6036980	rs1805319	G	C	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.250;QD=6.77;ReadPosRankSum=-2.275;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:209,130:0.38:339
chr7	6037057	rs60794673	GA	G	862.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=4.461;QD=5.07;ReadPosRankSum=-0.651;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:84,86:0.51:170
chr7	6038722	rs62456182	T	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr7	6057777	rs371698854	CTT	C	1273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.366;QD=9.44;ReadPosRankSum=1.076;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:70,65:0.48:135
chr7	6063283	rs4560	C	T	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:263,159:0.38:422
chr7	6064470	.	C	CT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=2.173;SOR=0.159;set=HC	GT:AD:AF:DP	0/1:98,38:0.28:136
chr7	6065914	rs10253000	T	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:101,66:0.40:167
chr7	6066057	rs34019419	G	GC	7366.73	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:362,229:0.39:591
chr7	6071060	rs4724769	G	A	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:249,178:0.42:427
chr7	6071277	rs4724770	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr7	6075823	rs2302334	A	T	5763.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:453,285:0.39:738
chr7	6078376	rs2302331	A	C	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:186,87:0.32:273
chr7	6080853	rs34743814	GA	G	832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=0.344;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:82,69:0.46:151
chr7	6084310	rs511969	G	T	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:168,117:0.41:285
chr7	6088339	rs523254	T	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=-1.111;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr7	6088349	rs523276	A	G	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.515;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr7	6088533	rs525090	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.271;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr7	6097667	rs558030	T	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr7	6097868	rs559842	A	C	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.232;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr7	6151400	.	A	AT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.249;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	6155166	rs62454267	G	T	3741.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:308,196:0.39:504
chr7	6185968	.	TA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=7.361;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.675;QD=1.12;ReadPosRankSum=-1.418;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr7	6189108	rs111659932	G	GA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=10.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.147;SOR=0.015;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr7	6199166	rs7783538	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr7	6204999	rs2301910	A	C	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:328,181:0.36:509
chr7	6230059	.	GTT	G	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.098;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=8.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.625;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr7	6370194	rs6952125	C	T	12543.77	.	AC=1;AF=0.500;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	0/1:371,574:0.61:945
chr7	6370305	rs3750039	C	G	9462.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:221,392:0.64:613
chr7	6370406	rs3750040	C	T	5620.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:153,243:0.61:396
chr7	6438217	rs35761891	A	G	5605.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:141,237:0.63:378
chr7	6485545	rs373434149	TA	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.640;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:208,44:0.17:252
chr7	6487293	rs3750037	G	C	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	6505901	rs2230263	T	C	5705.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	6513963	rs71531394	A	C	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:87,115:0.57:202
chr7	6537655	rs4574760	C	T	14356.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr7	6537821	rs6463568	G	C	12565.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr7	6545619	rs11980487	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	6550494	rs12702520	G	A	21107.77	.	AC=2;AF=1.00;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	1/1:2,832:1.00:834
chr7	6566322	rs2881723	T	G	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	6566442	rs12702526	C	T	6408.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	6590693	rs6463571	G	A	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	6591041	rs4724818	C	G	7782.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	6641635	rs13246348	C	T	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr7	6647738	rs4416743	T	C	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	6714423	rs10607178	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.470;QD=1.35;ReadPosRankSum=-2.231;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr7	6714961	rs377679285	CT	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.961;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.538;QD=2.12;ReadPosRankSum=0.754;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:66,34:0.34:100
chr7	6798600	rs199717429	A	T	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.645;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=41.52;MQRankSum=1.158;QD=15.85;ReadPosRankSum=3.834;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr7	6806605	rs148761894	G	A	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=1.113;QD=7.50;ReadPosRankSum=-0.269;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr7	6844574	rs75680229	C	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.447;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=47.72;MQRankSum=-5.236;QD=0.77;ReadPosRankSum=1.081;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:467,86:0.16:553
chr7	6845516	rs144852517	C	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=47.18;MQRankSum=-6.188;QD=6.96;ReadPosRankSum=-0.508;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:70,42:0.38:112
chr7	6845594	rs202001623	C	T	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.02;MQRankSum=-5.451;QD=6.62;ReadPosRankSum=0.587;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:84,50:0.37:134
chr7	6854272	rs11769113	A	T	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	6863146	rs67376408	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=6.690;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.876;QD=2.43;ReadPosRankSum=-3.083;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr7	7106636	rs6977967	A	G	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:87,165:0.65:252
chr7	7136061	rs35367486	G	GA	8272.73	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:5,371:0.99:376
chr7	7136077	rs17163287	C	A	3782.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:232,177:0.43:409
chr7	7277807	rs3807862	G	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr7	7398457	rs2348042	T	G	6647.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:169,277:0.62:446
chr7	7400239	rs7786515	A	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	7413149	rs61744841	T	C	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:177,98:0.36:275
chr7	7414923	rs78016696	C	T	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:163,99:0.38:262
chr7	7415217	rs1294651	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	7421019	rs1294626	C	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	7421310	rs1294627	A	G	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:92,119:0.56:211
chr7	7457571	rs78066683	G	A	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:81,106:0.57:187
chr7	7477250	rs5882126	T	TA	39.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr7	7480376	rs33937466	C	CA	3758.73	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:248,158:0.39:406
chr7	7483083	rs10234554	C	T	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:117,83:0.41:200
chr7	7491873	rs4720735	AG	CT	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	7492995	rs17167926	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:69,38:0.36:107
chr7	7495735	rs55745506	T	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:151,92:0.38:243
chr7	7514235	rs6952195	C	G	4267.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:301,214:0.42:515
chr7	7516683	rs17168103	T	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:145,83:0.36:228
chr7	7528880	rs12671912	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr7	7528951	rs6463696	C	T	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	7545571	rs17168333	T	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=2.113;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:47,26:0.36:73
chr7	7557297	rs1016028	T	C	7513.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	7559541	rs17151557	A	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr7	7570959	rs17168516	T	G	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:191,99:0.34:290
chr7	7571094	rs7804532	G	C	13195.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr7	7622696	rs4720741	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	7627975	rs17523883	C	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr7	7627994	rs6463702	T	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	7628275	rs7801367	C	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	7645535	rs10276434	A	G	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	7645806	rs2286209	A	G	4585.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:95,188:0.66:283
chr7	7646651	rs7806046	G	T	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	7646687	rs4222	A	G	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:164,204:0.55:368
chr7	7712941	rs10527750	TAGCAGCAGC	T	2157.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:151,76:0.33:227
chr7	7841524	rs6463722	G	T	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	7841561	rs2348558	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	8132252	rs4725069	T	C	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:127,142:0.53:269
chr7	8181555	rs80350640	C	CCA	39682.73	.	AC=2;AF=1.00;AN=2;DB;DP=1639;set=Intersection	GT:AD:AF:DP	1/1:11,1538:0.99:1549
chr7	8196529	rs10282493	A	T	16542.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.76;QD=27.94;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,592:1.00:592
chr7	8196567	rs200840693	AAAAAAAAAAAAAAAAAAG	A	2987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=5.238;MLEAC=1;MLEAF=0.500;MQ=62.89;MQRankSum=0.277;QD=12.45;ReadPosRankSum=4.448;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:63,177:0.74:240
chr7	8198039	rs3815488	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:96,50:0.34:146
chr7	8475147	rs6949787	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=0.705;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr7	8475216	rs80043703	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr7	8790549	rs10225984	C	T	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	9765662	rs10240050	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.05;ReadPosRankSum=2.015;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	9765716	rs10255217	A	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr7	11022230	rs218966	A	G	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=-0.339;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:45,67:0.60:112
chr7	11022564	rs218965	G	A	4290.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:140,190:0.58:330
chr7	11075263	rs2353340	A	G	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	11208989	rs28394821	C	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	11416378	rs2189351	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr7	11418670	rs2189352	C	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr7	11418931	rs12670599	T	C	5120.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:151,230:0.60:381
chr7	11419104	rs2285757	G	T	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr7	11419378	rs2107162	T	C	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:59,104:0.64:163
chr7	11441358	rs10950347	A	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr7	11441700	rs1859225	G	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr7	11446902	rs6956916	T	G	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:106,162:0.60:268
chr7	11447159	rs6975407	G	C	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr7	11452204	rs2301743	C	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr7	11464233	rs111459061	C	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:64,97:0.60:161
chr7	11464297	rs1859226	T	C	4598.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:145,199:0.58:344
chr7	11580903	rs2074604	A	G	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.849;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:75,44:0.37:119
chr7	11581121	rs47	T	C	8657.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:303,244:0.45:547
chr7	11581134	rs2074603	T	C	8309.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:263,224:0.46:487
chr7	11630298	rs2074602	C	A	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,238:1.00:239
chr7	11633193	rs2354954	G	A	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	11676377	rs2074598	G	A	5383.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:397,271:0.41:668
chr7	11676694	rs2074597	C	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:66,43:0.39:109
chr7	12263971	rs147889591	G	A	6739.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:200,301:0.60:501
chr7	12370657	rs2253353	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr7	12370702	rs3217131	AT	A	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	12370794	rs1059002	T	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr7	12370952	rs6954265	C	T	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr7	12371001	rs6954555	G	A	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr7	12371019	rs3815534	A	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr7	12372999	rs6460928	T	G	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr7	12373082	rs6460929	C	T	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:93,170:0.65:263
chr7	12373353	rs6460930	TG	CA	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;JOINED;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr7	12375667	rs35608044	G	GA	1763.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr7	12376811	rs2192828	A	C	10800.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:318,469:0.60:787
chr7	12382637	rs1440030	C	T	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:73,91:0.55:164
chr7	12383967	rs1440032	T	A	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:120,178:0.60:298
chr7	12391319	rs6967385	G	T	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr7	12393966	rs6944618	A	G	24224.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.11;ReadPosRankSum=1.604;SOR=0.442;set=HC	GT:AD:AF:DP	1/1:1,536:1.00:537
chr7	12393974	rs6944626	A	C	25287.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,584:1.00:584
chr7	12394053	rs6945167	G	T	22392.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:0,822:1.00:822
chr7	12394202	rs10267441	A	T	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:50,94:0.65:144
chr7	12395813	rs2119141	T	C	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	12396040	rs4719307	A	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr7	12400837	rs2053380	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:80,40:0.33:120
chr7	12406989	rs6460939	C	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:87,49:0.36:136
chr7	12410112	rs963323	G	A	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:177,99:0.36:276
chr7	12417407	rs7793993	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr7	12418938	rs10499421	G	C	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	12418964	rs10270931	T	C	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	12419039	rs10570724	TCA	T	17238.73	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr7	12419108	rs6967241	A	T	9959.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr7	12420092	rs1025787	G	C	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	12420447	rs6959370	T	G	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	12420517	rs6460941	T	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	12609988	rs2240571	G	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr7	12610594	rs2240572	A	G	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:87,105:0.55:192
chr7	12611252	rs6460967	T	C	2297.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:75,98:0.57:173
chr7	12617224	rs55829483	C	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr7	12617552	rs10248067	C	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr7	12620804	rs17283717	C	T	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr7	12636026	rs758111	T	C	10753.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr7	12644334	rs849778	G	T	12704.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr7	12644348	rs78612532	G	GGT	9436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=28.42;ReadPosRankSum=0.958;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:40,292:0.88:332
chr7	12644375	rs141537412	G	A	4366.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:121,182:0.60:303
chr7	12684340	rs2691810	C	T	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	13949853	.	CTTT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.96;ReadPosRankSum=2.189;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	13978645	rs3801098	C	T	2750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=0.378;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:33,68:0.67:101
chr7	13978648	rs3801099	T	A	2777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.656;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.71;ReadPosRankSum=0.320;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:34,70:0.67:104
chr7	13978809	rs9639168	T	C	4754.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:214,237:0.53:451
chr7	14016939	rs2074670	T	C	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	14017007	rs2066977	CC	TG	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	14017126	rs5882424	T	TA	604.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.26;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	14025640	rs3801110	G	A	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr7	14025727	rs3823704	C	T	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	14025766	rs10215655	T	A	12948.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr7	14026357	rs3213661	A	G	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	14027867	rs59844225	G	GCA	5263.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:22,168:0.88:190
chr7	14028189	rs11364123	CA	C	780.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;MQRankSum=0.000;QD=18.16;ReadPosRankSum=0.358;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:3,40:0.93:43
chr7	14028220	rs34468165	G	GA	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-1.330;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr7	14028245	rs11460974	G	GA	2399.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=6.661;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=18.75;ReadPosRankSum=-0.354;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:8,120:0.94:128
chr7	14028707	rs140879246	TA	T	12148.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr7	14028794	rs10622991	T	TAA	4471.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	14028860	rs11328804	CA	C	1650.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	14216442	rs17167945	A	G	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr7	14217673	rs6966154	G	A	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	14517650	rs377518451	TAC	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.817;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr7	14737622	rs145306944	AAAAG	A	731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=2.074;QD=16.63;ReadPosRankSum=-0.416;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:23,21:0.48:44
chr7	14758273	rs1997040	C	T	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:116,97:0.46:213
chr7	14775821	rs139628753	TG	T	1622.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:3,76:0.96:79
chr7	14775824	rs80024169	A	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:3,77:0.96:80
chr7	14881079	rs74902981	CAA	C	958.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	15346196	rs5882493	T	TA	1886.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:16,105:0.87:121
chr7	15405005	rs60202363	TA	T	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.756;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:33,41:0.55:74
chr7	15470543	.	G	GT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.400;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:54,26:0.33:80
chr7	15666230	rs3779406	C	T	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr7	15725797	rs113582077	ATGG	A	12111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=31.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.56;ReadPosRankSum=1.509;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:149,307:0.67:456
chr7	15726066	rs1050290	G	A	13172.77	.	AC=1;AF=0.500;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	0/1:359,593:0.62:952
chr7	15726117	rs33970897	A	ATT	6775.73	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:212,278:0.57:490
chr7	15726129	rs11975534	A	C	6874.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:209,296:0.59:505
chr7	16129153	rs28379235	C	T	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	16129172	rs9691136	A	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	16129214	rs11773533	G	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-0.526;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:68,41:0.38:109
chr7	16131260	rs1528137	C	T	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	16255602	rs4389828	A	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	16298434	rs1295153	T	C	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=10.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.12;ReadPosRankSum=-0.518;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr7	16298438	rs7799150	T	G	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.992;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=10.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.99;ReadPosRankSum=-0.341;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr7	16298766	rs5882563	A	AT	344.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr7	16348059	rs62441885	T	C	9170.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr7	16445673	rs6461252	A	T	9273.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr7	16460893	rs7782939	T	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	16503932	rs67149353	C	G	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:240,123:0.34:363
chr7	16505054	rs111391406	GA	G	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.427;QD=3.70;ReadPosRankSum=-0.903;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:55,28:0.34:83
chr7	16505341	rs6945425	T	C	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:99,80:0.45:179
chr7	16566391	rs6461263	T	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr7	16571973	rs1404173	A	G	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.004;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.704;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr7	16571976	rs1404172	C	G	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.147;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=0.857;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr7	16572008	rs2301965	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr7	16572051	rs1404171	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:129,59:0.31:188
chr7	16577376	rs6961390	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=6.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.135;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr7	16597114	rs6951596	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,75:0.66:113
chr7	16597174	rs6969347	A	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr7	16598655	rs6979816	G	A	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	16605861	rs11463350	A	AT	2814.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	16607177	rs11379958	T	TA	1439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.058;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.068;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:34,106:0.76:140
chr7	16620928	rs562687	A	G	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:85,136:0.62:221
chr7	16640358	rs543387	T	C	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	16641927	.	C	G	5603.77	.	AC=1;AF=0.500;AN=2;DP=389;set=Intersection	GT:AD:AF:DP	0/1:147,240:0.62:387
chr7	16650427	rs572570	C	G	9411.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr7	16655387	rs11540037	C	T	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:147,110:0.43:257
chr7	16655632	rs9638734	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	16676082	.	TA	T	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.166;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:114,40:0.26:154
chr7	16705132	.	TTG	T	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.713;QD=0.97;ReadPosRankSum=-0.234;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:275,42:0.13:317
chr7	16713933	rs11465103	A	AT	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr7	16725501	.	CTT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=10.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.048;SOR=0.057;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr7	16793504	rs6975847	A	G	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	16793779	rs11405941	G	GC	8085.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	16815786	rs2290836	C	G	10911.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.56;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr7	16816000	rs2290837	T	C	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	16818799	rs6461276	A	G	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	16823095	rs11491	G	A	21558.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:0,797:1.00:797
chr7	16834444	rs2272246	C	T	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	16834551	rs4719480	C	A	17711.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr7	16834597	rs6842	A	G	19395.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr7	16837404	rs819010	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr7	16839501	rs2272245	A	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	16872913	rs4719482	G	A	6325.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	16899197	rs11798	C	T	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr7	16901185	rs4236289	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	16901523	rs56817783	TA	T	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.634;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr7	16913394	rs10249749	A	G	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr7	16913520	rs4472406	G	A	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	16913617	rs4389824	A	G	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	17854532	rs2723501	G	T	4044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.329;QD=11.17;ReadPosRankSum=0.722;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:169,193:0.53:362
chr7	17854575	rs34649849	G	GAA	1497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.409;QD=9.08;ReadPosRankSum=-1.132;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:82,83:0.50:165
chr7	17854616	rs2723502	T	C	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr7	17869854	.	C	G	78	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=5;HapScore=2;MGOF=36;MMLQ=28;MQ=60.0;NF=0;NR=5;PP=78;QD=22.5542425094;SC=CCATGGTTTTCTAAGACAGGC;SbPval=1.0;Source=Platypus;TC=9;TCF=1;TCR=8;TR=5;WE=17869862;WS=17869844;set=Platypus	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	17874271	rs4721660	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	17874300	rs4721661	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr7	17890413	rs3839705	CA	C	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr7	17908130	rs2389858	T	A	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr7	17913083	rs5882635	A	AC	4642.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	17962382	rs11397631	G	GA	1710.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:67,88:0.57:155
chr7	17979793	rs3800963	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:70,37:0.35:107
chr7	18066569	rs3800962	C	A	4151.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:340,211:0.38:551
chr7	18067479	rs35708479	ACT	A	3186.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:105,85:0.45:190
chr7	18300132	rs13240203	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr7	18624800	rs2073974	T	C	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:328,168:0.34:496
chr7	18630208	rs1726610	A	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	18631098	.	ATGTG	A,ATG	4265.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.65;MQRankSum=0.295;QD=29.83;SOR=1.052;set=HC	GT:AD:AF:DP	1/2:1,43,99:0.30,0.69:143
chr7	18668945	rs67361882	AT	A	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.473;QD=1.90;ReadPosRankSum=-0.151;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr7	18674435	rs2285431	T	C	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	18688033	.	ATG	A	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.111;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:105,22:0.17:127
chr7	18767343	rs1178127	A	G	5528.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:481,299:0.38:780
chr7	18914251	rs2286213	C	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:97,57:0.37:154
chr7	18993870	rs2389998	C	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	19015338	rs56268228	A	C	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr7	19184428	.	G	T	5971.77	.	AC=1;AF=0.500;AN=2;DP=448;set=Intersection	GT:AD:AF:DP	0/1:173,271:0.61:444
chr7	19768960	rs2189566	G	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr7	19813018	rs12673970	T	C	2533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.347;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-2.006;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:47,112:0.70:159
chr7	20180425	rs10555255	TAC	T	961.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr7	20180507	rs55989776	G	GAC	1134.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,44:0.37:120
chr7	20180717	rs3735615	C	G	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:211,132:0.38:343
chr7	20198440	rs975263	G	A	4426.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:338,224:0.40:562
chr7	20371395	rs206197	T	C	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	20403353	rs35420999	AT	A	1663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=1.416;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:179,119:0.40:298
chr7	20406542	rs34556056	A	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr7	20418926	rs1042277	T	C	4216.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:276,206:0.43:482
chr7	20421490	rs2230398	T	C	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:290,193:0.40:483
chr7	20430900	rs10227623	C	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	20430960	rs3779506	T	C	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr7	20438370	rs6944997	A	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr7	20444532	rs2074424	C	T	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	20706645	rs12535128	G	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	20739774	rs5882753	AT	A	1323.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	20766943	rs11976861	C	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	20768013	rs10254317	G	A	11792.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr7	20778646	rs6461515	G	A	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	20778773	rs6461516	C	G	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	20778844	rs11380694	A	AG	570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=0.703;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr7	20782474	rs12669866	T	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	20803107	rs55827389	T	TC	1964.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;MQ=60.96;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	20824614	rs34908430	C	T	8165.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	20825043	.	T	TGCG	1037.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr7	20826270	rs112554769	GA	G	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.476;QD=2.27;ReadPosRankSum=0.409;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:106,39:0.27:145
chr7	20826452	rs34863300	T	G	10346.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr7	21468579	rs39303	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr7	21468869	rs141294478	TCC	T	4362.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=37.94;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	21470536	rs40245	A	T	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	21516627	rs3214203	AT	A	2125.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	21582917	rs2285942	C	T	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr7	21582963	rs2285943	GA	TT	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	21583329	rs2285946	T	C	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	21584820	rs7781669	A	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	21584892	.	T	TAAAAAAAAAA	124.06	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=62.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	21599233	rs10950854	C	T	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:57,97:0.63:154
chr7	21600902	rs4374884	A	G	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:87,113:0.56:200
chr7	21603678	rs5008148	A	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	21603750	.	G	GA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=8.312;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.628;QD=1.35;ReadPosRankSum=-1.209;SOR=1.991;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr7	21609625	rs56832849	C	T	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:66,101:0.60:167
chr7	21611399	rs66476925	G	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.904;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:36,43:0.54:79
chr7	21627909	rs3810897	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr7	21628237	rs6963535	C	T	14656.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr7	21628365	rs72655993	C	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:110,69:0.39:179
chr7	21630982	rs4615458	A	G	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:115,177:0.61:292
chr7	21639818	rs6461586	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr7	21640405	rs10224537	A	G	6897.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:221,326:0.60:547
chr7	21641218	rs3827657	G	A	3775.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:95,169:0.64:264
chr7	21646233	.	C	CT	1086.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.209;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:117,113:0.49:230
chr7	21654602	rs7779983	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr7	21657130	rs12539987	C	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	21658855	rs57208694	A	G	4095.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:92,169:0.65:261
chr7	21658964	rs68184450	C	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr7	21659554	rs112373177	A	ATTAAT	3977.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:68,97:0.59:165
chr7	21659645	rs56029521	T	C	5260.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:119,236:0.66:355
chr7	21727186	rs62445282	A	G	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:91,75:0.45:166
chr7	21727271	rs62445283	C	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr7	21757287	rs2965409	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr7	21757636	rs2074760	G	A	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:49,90:0.65:139
chr7	21765452	rs12536928	C	T	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:123,155:0.56:278
chr7	21765636	rs2965424	T	C	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr7	21775153	rs2072219	A	C	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr7	21775210	rs2270022	A	G	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:89,131:0.60:220
chr7	21775443	rs2072221	G	A	7171.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:245,326:0.57:571
chr7	21778449	rs1109806	C	T	4934.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:170,238:0.58:408
chr7	21779084	rs2906686	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr7	21779278	rs9639393	A	G	4155.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:121,188:0.61:309
chr7	21789431	rs372924996	A	G	6210.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:183,285:0.61:468
chr7	21789442	rs4355679	T	C	5477.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:168,261:0.61:429
chr7	21813318	rs11374411	A	AT	5353.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr7	21818486	rs4273751	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	21826199	rs2072093	G	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr7	21828743	rs11412202	T	TA	311.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr7	21847457	rs6969900	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr7	21856151	rs2214326	G	A	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:218,122:0.36:340
chr7	21856390	rs4141347	G	A	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:112,65:0.37:177
chr7	21858043	rs10277757	A	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	21892023	rs55939718	T	TAA	1101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.022;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.480;QD=20.03;ReadPosRankSum=0.711;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:8,47:0.85:55
chr7	21893993	rs4722064	G	T	16980.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,649:1.00:649
chr7	21901566	rs4722067	T	C	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	21901740	rs35912578	C	CT	127.75	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	21907375	rs2074329	G	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr7	21907452	rs5882827	G	GT	4880.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	21907458	rs4995598	A	G	5184.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	21907696	rs11773744	T	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.93;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	21907722	rs55801704	C	CT	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=2.655;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr7	21920556	rs62445884	G	A	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr7	21924014	rs6461613	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr7	21932044	rs12537531	C	T	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:102,144:0.59:246
chr7	21939485	rs34245961	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr7	21940480	rs56268505	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr7	21940557	rs10555456	AACTT	A	5597.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	21940960	rs7971	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr7	21941861	rs60370798	ATCTT	A	7324.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	21945086	rs6953368	C	A	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:35,92:0.72:127
chr7	21945840	rs4445125	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr7	21985347	rs1406706	G	A	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	22190131	.	GAA	G,GA	1478.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.752;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.956;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.69;MQRankSum=1.526;QD=12.32;ReadPosRankSum=0.507;SOR=0.701;set=HC	GT:AD:AF:DP	1/2:19,42,59:0.35,0.49:120
chr7	22197507	rs7809342	A	G	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	22202117	rs12592	G	A	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr7	22202196	rs1981600	T	A	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	22202485	rs1981601	T	C	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	22242370	rs4722110	G	T	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	22242535	rs4719687	T	C	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	22330700	rs2302001	A	G	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:211,121:0.36:332
chr7	22330862	rs367948789	TA	T	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.153;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:144,57:0.28:201
chr7	22330953	rs2302002	T	G	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr7	22347861	rs10499552	G	A	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:64,93:0.59:157
chr7	22349769	rs17146668	C	A	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=2.483;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:196,72:0.27:268
chr7	22355166	rs10607345	CTA	C	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr7	22357716	rs10950897	T	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	22526636	rs17146979	C	G	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:110,120:0.52:230
chr7	22532321	rs192189247	T	C	6061.77	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:525,308:0.37:833
chr7	22532434	rs4000921	G	C	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.25;QD=30.02;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	22533452	rs201338533	C	T	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:166,144:0.46:310
chr7	22533518	rs145105713	A	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,49:0.56:87
chr7	22768572	rs2069840	C	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,63:0.53:119
chr7	22857305	rs75569325	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr7	22857589	rs7782015	T	C	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=4.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=1.515;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:84,56:0.40:140
chr7	22857682	rs28617621	A	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr7	22861739	rs35353454	T	C	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:206,120:0.37:326
chr7	22861978	rs4354222	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr7	22862192	rs2270106	A	G	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:292,201:0.41:493
chr7	22896231	rs1608553	G	C	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:177,195:0.52:372
chr7	22896340	rs5882865	AC	A	4202.73	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:60,191:0.76:251
chr7	22985868	rs2286491	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr7	23000783	rs35493358	G	GCTCT	578.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr7	23145837	rs1005786	G	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr7	23163270	rs11982002	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr7	23164526	rs2058275	C	G	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	23164701	rs15775	C	T	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:98,86:0.47:184
chr7	23191625	rs2178140	G	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:147,79:0.35:226
chr7	23191636	rs2178139	A	G	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:158,93:0.37:251
chr7	23191664	rs2141306	G	A	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:182,121:0.40:303
chr7	23191899	rs2141305	T	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	23195555	rs141774430	CTTTAT	C	4852.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	23221797	rs200880793	A	ACGGCAGCAACCG	2921.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=7.589;QD=13.59;ReadPosRankSum=0.300;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:129,86:0.40:215
chr7	23221870	rs7808488	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,29:0.29:100
chr7	23226646	rs367957893	CT	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.170;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.354;QD=2.39;ReadPosRankSum=0.860;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:53,24:0.31:77
chr7	23236200	.	C	G	416.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr7	23286315	rs858239	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr7	23293098	rs199348	C	A	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:176,131:0.43:307
chr7	23293746	rs199347	A	G	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:165,105:0.39:270
chr7	23296533	rs199355	G	A	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:298,194:0.39:492
chr7	23300049	rs199351	A	C	3234.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:244,162:0.40:406
chr7	23306020	rs156429	T	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr7	23307634	rs2307783	ATGGG	A	2331.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:120,65:0.35:185
chr7	23352512	rs199653	C	A	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	23357321	rs156414	C	T	3665.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:127,166:0.57:293
chr7	23545119	.	TA	T	35.90	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=7.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	23562175	.	TAA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.605;QD=6.88;ReadPosRankSum=0.180;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr7	23624570	rs227933	G	C	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	23719766	rs56391241	G	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.77;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	23719779	rs56359038	G	A	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	23727944	rs7802834	T	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	23727960	rs13237857	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	23737795	rs5029444	T	C	7978.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	23757162	rs6945306	G	C	6156.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:163,291:0.64:454
chr7	23768907	rs12176610	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr7	23794029	rs4722266	G	A	13041.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr7	23794139	rs34664371	TA	T	4967.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	23810517	rs7785154	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	23810605	rs1469000	T	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	23810845	rs1469001	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	23823144	rs10950961	A	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr7	23823355	rs6461737	A	G	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,50:0.44:114
chr7	23826066	rs1862068	A	G	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	23854717	rs2390814	C	T	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	23854838	rs5882915	G	GA	4888.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	23871861	rs138652787	C	G	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:135,78:0.37:213
chr7	23872024	rs56362098	C	CTTTG	1787.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	23872409	rs2214236	T	A	8173.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr7	24324759	rs16141	T	G	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	24325009	rs5573	G	A	10199.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr7	24329001	rs113179092	AT	A	2830.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	24329133	rs5574	C	T	10841.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	24703298	rs1053962	G	A	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	24718710	rs722218	A	C	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	24719074	rs713571	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	24742585	rs2074142	C	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	24747910	rs2721809	G	A	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	24749755	rs35529766	TC	T	1647.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	24756643	rs73082019	A	G	8447.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:201,360:0.64:561
chr7	24756951	rs12540919	C	T	8545.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:222,378:0.63:600
chr7	24758645	rs876307	G	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	24758753	rs754555	C	T	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	24758795	rs876305	T	C	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	24758818	rs754554	G	T	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	24758852	rs754553	C	T	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	24784403	rs2521768	C	T	7632.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	24789082	rs2521770	C	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	24789116	.	CA	C	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.927;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:59,29:0.33:88
chr7	24840072	.	CT	C	139	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.959;QD=3.76;ReadPosRankSum=-0.331;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	24843810	rs2285651	G	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr7	24844066	rs2285653	C	G	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=3.338;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.859;QD=13.04;ReadPosRankSum=0.050;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:54,76:0.58:130
chr7	24854765	rs1044956	G	A	12813.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr7	24859962	rs7810587	A	C	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:102,140:0.58:242
chr7	24860000	rs6979174	G	C	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	24873911	rs2285687	T	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:65,53:0.45:118
chr7	24874459	rs2285688	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr7	24888620	rs757156	T	C	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr7	24891947	rs6461822	C	T	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr7	24901503	rs11324094	CT	C	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-0.578;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr7	24901519	rs10951031	T	G	683.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=0.260;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr7	24902762	rs2285690	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,61:0.73:84
chr7	24903107	rs2285691	C	G	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:131,115:0.47:246
chr7	24904868	rs2040689	T	A	6879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.311;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.60;ReadPosRankSum=0.645;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:155,179:0.54:334
chr7	24904873	rs3735543	G	A	7076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=0.845;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:164,186:0.53:350
chr7	24904889	rs2040690	T	C	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:183,230:0.56:413
chr7	24905179	rs41275967	T	C	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:143,72:0.33:215
chr7	24911167	rs12670857	C	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr7	24911357	rs6952815	T	G	8367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=1.794;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:275,400:0.59:675
chr7	25175885	rs34005449	T	C	6630.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:170,265:0.61:435
chr7	25182405	rs11984293	G	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:91,120:0.57:211
chr7	25194618	rs2523073	G	A	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr7	25194665	rs2523072	G	C	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:56,86:0.61:142
chr7	25194857	rs2717899	A	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr7	25194918	rs2523071	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	25198089	rs2523066	C	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr7	25200653	rs2717877	G	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr7	25207849	rs2717859	G	A	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:86,86:0.50:172
chr7	25207963	rs3213642	G	A	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:198,199:0.50:397
chr7	25207974	rs2717858	T	C	4223.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:188,200:0.52:388
chr7	25207994	rs2717857	G	A	4274.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:176,199:0.53:375
chr7	25264847	rs2717854	T	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr7	25266400	rs2717851	G	A	3754.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:245,173:0.41:418
chr7	25267963	rs886354	G	C	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	25268157	rs199968975	G	GT	39.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr7	25989520	rs6977848	T	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr7	25989732	rs111299611	GA	G	1112.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr7	26217450	rs7807030	T	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr7	26223294	rs12113404	A	G	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:120,65:0.35:185
chr7	26223431	rs73281527	C	T	6254.77	.	AC=1;AF=0.500;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	0/1:516,335:0.39:851
chr7	26224128	rs73281530	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:168,105:0.38:273
chr7	26224668	rs2074566	C	T	4529.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:342,212:0.38:554
chr7	26232367	rs12672536	T	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:67,35:0.34:102
chr7	26235592	rs111941879	A	ATT	4977.73	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:235,168:0.42:403
chr7	26235637	rs61009175	G	A	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:114,91:0.44:205
chr7	26236689	rs73281546	A	G	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:113,64:0.36:177
chr7	26236778	rs73281548	T	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr7	26237238	rs41275982	A	G	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:225,118:0.34:343
chr7	26247984	.	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.518;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:97,22:0.18:119
chr7	26386122	rs3801891	T	A	5907.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:149,266:0.64:415
chr7	26386154	rs3801890	T	C	5481.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:132,252:0.66:384
chr7	26404071	rs2253569	G	A	3132.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	26578283	rs55970331	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr7	26678856	rs57000259	A	G	6992.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	26685934	rs12671270	T	C	13394.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr7	26724279	rs212850	T	G	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	26765596	rs1129771	C	A	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	26883761	rs61646374	T	TA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-2.839;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:201,42:0.17:243
chr7	27135314	rs10951154	C	T	4472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=842;ExcessHet=3.0103;FS=5.807;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-2.814;QD=5.73;ReadPosRankSum=1.579;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:525,255:0.33:780
chr7	27140237	rs117630421	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr7	27141267	rs706016	C	T	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	27141488	rs77382168	G	C	15395.77	.	AC=1;AF=0.500;AN=2;DB;DP=1115;set=Intersection	GT:AD:AF:DP	0/1:437,677:0.61:1114
chr7	27147451	.	TAAA	T,TAA	711.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=5.378;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.323;QD=15.82;ReadPosRankSum=2.343;SOR=3.417;set=HC	GT:AD:AF:DP	1/2:2,10,33:0.22,0.73:45
chr7	27169093	rs2158218	T	G	17392.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr7	27169617	rs6943542	T	C	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	27169934	rs10251056	A	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	27170145	rs6944345	T	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	27196069	rs2301720	A	C	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:236,140:0.37:376
chr7	27196113	rs2301721	C	T	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:263,162:0.38:425
chr7	27203139	rs7810502	G	A	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.158;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=1.270;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr7	27238691	rs2071265	C	G	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	27279191	rs3801321	T	G	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	27566053	rs12700813	G	C	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr7	27578167	rs9639553	C	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr7	27581495	rs6462029	T	C	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:60,90:0.60:150
chr7	27582783	rs978447	G	A	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:56,93:0.62:149
chr7	27668860	rs6415252	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr7	27671899	rs7779990	T	C	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:46,77:0.63:123
chr7	27672199	rs143191859	CA	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.325;QD=3.06;ReadPosRankSum=0.467;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	27702390	rs11550134	C	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr7	27807441	rs7807729	G	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.84;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	27807441	.	GTGAAAATTG	ATGAAAATTC,ATGAAAATTG	434	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=26;MQ=60.0;NF=10,28;NR=5,13;PP=156,434;QD=13.9645249908;SC=TATAAAGAATGTGAAAATTGC;SbPval=0.53;Source=Platypus;TC=41;TCF=28;TCR=13;TR=15,41;WE=27807458;WS=27807431;set=Platypus	GT:AF:DP	0/1:0.37:41
chr7	27807450	rs7807738	G	C	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=0.425;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr7	27807589	rs7790914	T	C	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	27807650	rs7808062	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr7	27885969	rs74847888	CGT	C	2021.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr7	27886171	rs6462054	A	G	12590.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr7	27953035	rs210	A	G	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:250,128:0.34:378
chr7	28031704	rs73089199	T	C	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:152,89:0.37:241
chr7	28220228	rs10255700	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr7	28319234	rs177484	A	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:318,141:0.31:459
chr7	28449965	rs12538330	T	C	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:191,137:0.42:328
chr7	28534501	rs3216916	C	CT	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.922;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.550;QD=4.32;ReadPosRankSum=-0.184;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:118,54:0.31:172
chr7	28858456	rs10951205	A	G	3391.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:101,154:0.60:255
chr7	28995800	rs61742220	G	A	13040.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr7	28996557	rs3735562	C	T	7342.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr7	28996944	rs740250	T	C	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	28997141	rs6950750	G	C	10952.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	28997497	rs67010340	GC	G	10857.73	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr7	28997596	rs5883174	G	GC	3609.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	29103867	rs644763	T	C	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=35.64;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	29103867	.	TGGAAAGACAT	CGGAAAGACAC,CGGAAAGACAT	1856	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=60.05;NF=35,79;NR=61,119;PP=1856,985;QD=19.8902903631;SC=GAAGGGGCATTGGAAAGACAT;SbPval=0.68;Source=Platypus;TC=198;TCF=79;TCR=119;TR=96,198;WE=29103885;WS=29103857;set=Platypus	GT:AF:DP	0/1:0.48:198
chr7	29103877	rs2074783	T	C	2585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.844;QD=13.75;ReadPosRankSum=1.373;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:77,111:0.59:188
chr7	29103944	rs34641639	A	AT	2417.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	29105776	rs2270027	A	G	1990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.091;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:73,97:0.57:170
chr7	29111578	rs2074784	A	C	8048.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:230,353:0.61:583
chr7	29111620	rs317719	A	C	12173.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,336:1.00:337
chr7	29111634	rs2074785	C	A	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:115,152:0.57:267
chr7	29126046	rs323192	T	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,34:0.33:102
chr7	29132212	rs2687636	A	G	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:187,135:0.42:322
chr7	29132279	rs117744081	A	G	5311.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:167,241:0.59:408
chr7	29160604	rs34219043	C	T	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:106,144:0.58:250
chr7	29186576	rs245881	A	G	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:176,125:0.42:301
chr7	29394048	rs757327	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr7	29394220	rs66659316	CTT	C	3576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.014;QD=8.42;ReadPosRankSum=1.033;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:268,157:0.37:425
chr7	29394435	rs10215545	C	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr7	29407518	rs142914048	TTC	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=4.275;QD=0.15;ReadPosRankSum=-2.014;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:344,42:0.11:386
chr7	29437867	rs7799981	T	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	29439641	rs12669481	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr7	29439773	rs10248000	C	T	2431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=1.539;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:52,103:0.66:155
chr7	29440024	rs56056122	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr7	29544298	.	C	CTT	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-1.276;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:74,45:0.38:119
chr7	29546763	rs11388362	A	AT	1446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.065;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=10.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=0.396;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:25,89:0.78:114
chr7	29552463	rs1420145	C	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	29605935	rs2302617	G	A	4042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-0.288;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:303,204:0.40:507
chr7	29605975	rs2302618	C	G	20704.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	1/1:0,792:1.00:792
chr7	29606288	rs10271996	C	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:82,61:0.43:143
chr7	29720404	rs850108	A	G	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-2.709;QD=4.93;ReadPosRankSum=-2.657;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:129,54:0.30:183
chr7	29771546	rs112712037	CT	C	1046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=14.953;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.327;QD=6.71;ReadPosRankSum=2.885;SOR=0.158;set=HC	GT:AD:AF:DP	0/1:66,90:0.58:156
chr7	29771597	rs850084	A	C	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:151,124:0.45:275
chr7	29781927	rs850098	T	A	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:364,224:0.38:588
chr7	29944062	rs4722959	A	T	8640.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	30113862	rs149548208	T	TTG	2647.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:18,94:0.84:112
chr7	30177095	rs6954451	G	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	30177278	rs6954379	C	T	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr7	30485703	rs55996014	G	GC	2211.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:113,63:0.36:176
chr7	30485710	rs6958571	A	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:131,62:0.32:193
chr7	30485741	rs2907749	A	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:168,148:0.47:316
chr7	30490760	rs2075822	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr7	30536874	rs38405	G	A	3548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.274;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:131,172:0.57:303
chr7	30538651	rs38409	T	C	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:142,103:0.42:245
chr7	30634661	rs1049402	C	G	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:129,154:0.54:283
chr7	30638292	rs77213416	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr7	30651938	rs1986756	G	A	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:99,161:0.62:260
chr7	30655542	rs11553502	T	C	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:123,164:0.57:287
chr7	30661237	rs146685777	G	A	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:95,56:0.37:151
chr7	30662087	rs75855065	T	C	8041.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:219,366:0.63:585
chr7	30662174	rs17159291	C	T	3504.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:86,151:0.64:237
chr7	30666596	.	CA	C	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.507;QD=6.01;ReadPosRankSum=-0.951;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:20,31:0.61:51
chr7	30671087	rs14270	T	C	6032.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:194,274:0.59:468
chr7	30673401	rs4593	A	G	5186.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:121,236:0.66:357
chr7	30673512	rs70983380	TA	T	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.401;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr7	30695388	rs111415208	A	G	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.397;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.35;ReadPosRankSum=-0.423;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:26,42:0.62:68
chr7	30695393	rs148095983	G	GA	1421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=5.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.57;ReadPosRankSum=0.785;SOR=0.224;set=HC	GT:AD:AF:DP	0/1:27,36:0.57:63
chr7	30695397	.	C	T	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=0.069;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr7	30695406	rs7812133	G	A	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=-0.155;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:22,33:0.60:55
chr7	30701665	rs149265265	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	30701914	rs4723000	G	A	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:70,124:0.64:194
chr7	30702244	rs2270008	C	T	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr7	30705105	rs8192496	G	A	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,57:0.43:134
chr7	30721770	rs8175360	T	C	4577.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:107,199:0.65:306
chr7	30728452	rs917195	C	T	9281.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:215,241:0.53:456
chr7	30728472	rs917196	C	G	9928.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:255,278:0.52:533
chr7	30728557	rs58682124	A	G	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:190,202:0.52:392
chr7	30728908	rs255100	A	T	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:172,100:0.37:272
chr7	30739525	rs255119	G	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-1.302;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:58,37:0.39:95
chr7	30739691	rs107540	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr7	30791848	rs4723010	G	A	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:194,123:0.39:317
chr7	30795436	rs4720015	T	G	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:114,71:0.38:185
chr7	30805809	.	T	TCACACA	1199	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=28;MQ=60.25;NF=37;NR=6;PP=1199;QD=28.6976744186;SC=GGATATGATTTCTCACACACA;SbPval=0.85;Source=Platypus;TC=104;TCF=83;TCR=21;TR=43;WE=30805822;WS=30805799;set=Platypus	GT:AD:AF:DP	1/0:61,43:0.41:104
chr7	30805811	rs2013200	T	A	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr7	30805849	.	A	ACACACC	2700.73	.	AC=1;AF=0.500;AN=2;DP=250;set=Intersection	GT:AD:AF:DP	0/1:146,102:0.41:248
chr7	30805913	rs3901848	G	A	3425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=61.81;MQRankSum=12.053;QD=7.24;ReadPosRankSum=2.111;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:283,190:0.40:473
chr7	30825229	rs2269921	C	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	30831082	rs12701034	C	T	23179.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.09;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,625:1.00:625
chr7	30831082	.	CGGACAG	TGGACAA,TGGACAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=148,278;NR=187,326;PP=2944,2962;QD=20;SC=AGCACAGACACGGACAGGATG;SbPval=0.62;Source=Platypus;TC=604;TCF=278;TCR=326;TR=335,604;WE=30831096;WS=30831072;set=Platypus	GT:AF:DP	0/1:0.55:604
chr7	30831088	rs35897481	G	A	7996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=1.132;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:256,353:0.58:609
chr7	30876123	rs10247874	G	A	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:44,71:0.62:115
chr7	30876432	rs10258097	A	G	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	30890038	rs62449090	G	A	4913.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:138,217:0.61:355
chr7	30890161	rs78722842	G	A	3530.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:101,161:0.61:262
chr7	30898697	rs17159526	G	C	7710.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:244,342:0.58:586
chr7	30911984	rs3801323	G	T	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:91,140:0.61:231
chr7	30912007	rs3801324	C	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:55,88:0.62:143
chr7	30915263	rs10216063	A	G	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:39,64:0.62:103
chr7	30922459	rs34837095	C	T	3889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.594;QD=16.69;ReadPosRankSum=0.153;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:68,165:0.71:233
chr7	30922507	rs34922367	CAT	C	13609.73	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:211,350:0.62:561
chr7	30961790	rs28362731	G	A	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:337,183:0.35:520
chr7	31003819	rs4988494	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr7	31015565	rs2741	T	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:123,63:0.34:186
chr7	31016018	rs4988504	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:169,108:0.39:277
chr7	31125082	rs11410563	A	AG	3752.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	31132235	rs112436908	CT	C	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.956;QD=0.84;ReadPosRankSum=-2.188;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:275,71:0.21:346
chr7	31145998	rs9784952	G	C	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:91,126:0.58:217
chr7	31146095	.	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=2.669;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:645,91:0.12:736
chr7	31378933	rs2233404	A	G	4334.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:146,188:0.56:334
chr7	31589077	rs117297547	G	A	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:218,137:0.39:355
chr7	31592733	rs7811042	C	A	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	31594166	rs2286710	C	T	12049.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr7	31594258	rs12155214	G	T	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	31611758	rs67930674	G	T	6613.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:230,313:0.58:543
chr7	31617733	rs6945679	T	C	18125.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr7	31618008	rs10252720	A	G	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	31681765	rs10239388	C	T	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	31682453	rs4141001	C	T	10348.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr7	31683410	rs10247620	G	A	39905.77	.	AC=2;AF=1.00;AN=2;DB;DP=1473;set=Intersection	GT:AD:AF:DP	1/1:0,1468:1.00:1468
chr7	31683610	rs38398	G	A	14394.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr7	31691697	rs3735424	T	C	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	31732084	rs36047130	T	G	11335.77	.	AC=1;AF=0.500;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	0/1:409,543:0.57:952
chr7	31735263	rs34173	G	C	8479.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr7	31735297	rs34174	T	G	2479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.334;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:131,73:0.36:204
chr7	31735300	rs2240966	G	A	2463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=-0.074;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:122,66:0.35:188
chr7	31830095	rs982857	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr7	31848706	rs3213709	A	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,62:0.53:117
chr7	31855420	rs1860789	A	G	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	31855569	rs2302450	G	A	9847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=-0.961;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:317,443:0.58:760
chr7	31855578	rs1860790	G	A	28104.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	1/1:0,764:1.00:764
chr7	31876766	rs2270218	T	C	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	31890106	rs917756	T	C	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	31918879	rs1860786	C	T	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	32092037	rs2190128	G	C	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:63,87:0.58:150
chr7	32110115	rs30598	C	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr7	32209425	rs977625	A	G	14399.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr7	32248984	rs10951324	G	A	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	32249216	rs2240676	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	32338337	rs215607	G	A	7635.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	32527009	rs7800049	G	A	5482.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:483,292:0.38:775
chr7	32528366	rs35608030	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr7	32529936	rs1584614	G	C	6257.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:411,324:0.44:735
chr7	32591135	rs3213972	G	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr7	32591158	rs3213973	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr7	32593234	rs75267691	CTT	C,CT	2198.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=131;set=Intersection	GT:AF:DP	1/2:0.20,0.76:125
chr7	32593271	rs6961786	G	A	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:130,107:0.45:237
chr7	32594278	rs2290210	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr7	32598087	rs12673921	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:113,41:0.27:154
chr7	32598138	rs12673881	C	T	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.140;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:151,54:0.26:205
chr7	32598359	rs1562828	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr7	32598524	rs1466144	G	A	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	32598656	rs2290214	C	T	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:152,197:0.56:349
chr7	32599204	rs34973430	A	AT	679.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	32609565	rs2305320	A	G	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	32613020	rs1993050	A	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:104,50:0.32:154
chr7	32615553	rs6462381	C	T	7880.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr7	32619653	rs6462383	T	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr7	32620325	rs35499747	T	TTG	1108.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chr7	32623250	rs1817046	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr7	32623477	rs34778959	C	G	5583.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:225,268:0.54:493
chr7	32715474	rs34569336	T	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr7	32772477	rs2923266	C	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-7.601;QD=1.76;ReadPosRankSum=-3.130;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:69,16:0.19:85
chr7	32956941	rs139835645	C	T	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.99;QD=27.06;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	33016120	rs3750116	G	T	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	33028487	rs35727868	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr7	33059407	rs2392209	A	G	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	33060946	rs3750117	A	G	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	33063492	rs6955792	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	33102462	rs13228639	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	33102514	rs13228827	G	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	33136983	rs6462460	G	A	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr7	33139147	rs17472556	G	A	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:62,102:0.62:164
chr7	33186082	rs1969575	C	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	33282577	rs7793096	G	A	3541.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:311,186:0.37:497
chr7	33380598	rs11981364	G	T	7729.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr7	33380673	rs10486527	T	C	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	33385852	rs6974593	C	T	10393.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,375:1.00:376
chr7	33388618	rs9785054	C	T	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	33388829	rs73101660	T	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:94,51:0.35:145
chr7	33391094	rs76983967	A	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr7	33977125	.	G	GGTGTGTGT,GGTGTGTGTGT	751.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=35;set=Intersection	GT:AF:DP	1/2:0.35,0.65:17
chr7	34009946	rs10265207	C	T	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	34192762	rs6968741	G	C	9666.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr7	34685772	rs1582277	A	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-2.085;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:32,28:0.47:60
chr7	34697982	rs887020	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr7	34698210	rs2530548	A	G	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:175,125:0.42:300
chr7	34698234	rs2530549	A	C	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:145,101:0.41:246
chr7	34698251	rs2530550	C	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:121,80:0.40:201
chr7	34698321	rs2530551	A	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=0.056;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chr7	34698331	rs401256	G	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.810;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=0.272;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr7	34724373	rs11290993	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.222;QD=0.31;ReadPosRankSum=-0.250;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chr7	34725322	rs740623	T	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:110,85:0.44:195
chr7	34874209	rs17170017	C	G	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	34888010	rs10270521	T	C	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,93:0.61:152
chr7	34889182	rs6972158	A	G	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:126,146:0.54:272
chr7	34889222	rs10275028	T	C	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:101,136:0.57:237
chr7	34917740	rs7809642	C	T	2055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-2.463;QD=13.61;ReadPosRankSum=-1.301;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:55,96:0.64:151
chr7	34979082	rs3735410	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr7	34979748	.	C	CT	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-1.175;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr7	34981591	rs35242437	G	GT	616.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr7	35050217	rs7782779	A	G	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:114,91:0.44:205
chr7	35225356	.	G	T	2155.77	.	AC=1;AF=0.500;AN=2;DP=154;set=Intersection	GT:AD:AF:DP	0/1:56,98:0.64:154
chr7	35289889	rs5883498	C	CA	2826.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	35289941	rs5883499	C	CA	1635.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	35293193	rs336283	A	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:68,62:0.48:130
chr7	35414453	rs17608167	T	C	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	35414769	rs2553113	C	T	18540.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr7	35414772	rs2553114	C	T	18377.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr7	35673799	rs2305333	T	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr7	35673870	rs2305334	C	T	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:97,158:0.62:255
chr7	35678214	rs3816422	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr7	35840898	rs59008252	G	GC	3641.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	35928433	rs70974780	C	CA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.858;QD=5.84;ReadPosRankSum=1.234;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	35928678	rs58918750	T	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	36012126	rs61746272	C	A	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:92,128:0.58:220
chr7	36118939	rs118057637	AC	GA	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;JOINED;set=Intersection	GT:AD:AF:DP	0/1:73,70:0.49:143
chr7	36124231	rs5883531	G	GT	3147.73	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:184,111:0.38:295
chr7	36124292	rs1986593	G	A	6963.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	36320821	rs196586	G	A	10375.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	36324436	rs13232200	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr7	36327410	rs196595	A	G	4975.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:149,211:0.59:360
chr7	36338564	rs2241141	G	A	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:80,59:0.42:139
chr7	36338589	rs11773889	C	T	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:106,84:0.44:190
chr7	36338749	rs196613	T	C	14651.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr7	36338841	rs196614	T	C	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr7	36366569	rs196655	A	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr7	36370499	rs196659	C	G	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	36370555	rs196660	G	T	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	36445855	rs61737563	AG	CA	11572.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;JOINED;set=Intersection	GT:AD:AF:DP	0/1:195,292:0.60:487
chr7	36447349	rs143969069	A	ACTT	6777.73	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:110,168:0.60:278
chr7	36447600	rs3801315	T	C	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:89,140:0.61:229
chr7	36456614	rs3779226	C	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.917;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	36456870	rs78667831	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr7	36458828	rs17170590	G	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr7	36460419	rs56075305	CA	C	3574.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:59,121:0.67:180
chr7	36460467	rs56385393	T	A	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,62:0.63:99
chr7	36461442	rs79624523	T	C	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:106,154:0.59:260
chr7	36462205	rs2302526	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr7	36463335	rs2302527	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr7	36465192	.	TGC	T,TATTAGC	948.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=47;set=Intersection	GT:AF:DP	0/1:0.52:44
chr7	36465193	.	GC	AT	1104	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=4;MGOF=7;MMLQ=28;MQ=60.0;NF=11;NR=1;PP=1104;QD=96.4556562385;SC=GTGAGCCACTGCTCCCGGCTA;SbPval=0.92;Source=Platypus;TC=35;TCF=28;TCR=7;TR=12;WE=36465202;WS=36465187;set=Platypus	GT:AD:AF:DP	1/0:23,12:0.34:35
chr7	36465194	.	C	CATTAAT	948.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.56;ReadPosRankSum=-2.033;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr7	36465570	rs6957214	T	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr7	36465606	rs375398580	CT	C	681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.359;QD=8.52;ReadPosRankSum=-0.865;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:28,52:0.65:80
chr7	36466456	.	G	GT	2533.73	.	AC=1;AF=0.500;AN=2;DP=173;set=Intersection	GT:AD:AF:DP	0/1:88,84:0.49:172
chr7	36466655	rs3815484	C	A	3849.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:87,109:0.56:196
chr7	36466669	rs3815485	T	G	3389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=1.103;QD=20.92;ReadPosRankSum=2.337;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:74,88:0.54:162
chr7	36478677	rs75829944	G	A	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	36489477	rs3801304	A	G	4376.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:138,187:0.58:325
chr7	36492045	rs3801302	G	A	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr7	36552656	rs7986	G	A	8710.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr7	36552729	rs59476355	A	AT	10933.73	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr7	36552790	rs57543920	G	GT	13430.73	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr7	36561469	rs6462681	G	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	36588405	rs5883561	A	AC	2894.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;MQ=60.51;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	36588955	rs3735397	G	A	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	36656147	rs2727818	A	T	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	36660502	rs35645334	CATGA	C	1406.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr7	36661423	rs2727822	T	C	7573.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	36662714	rs58016731	AGTCTT	A	1900.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr7	36726476	rs35260531	CGT	C	1177.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr7	36729757	rs7790095	T	C	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.231;QD=7.35;ReadPosRankSum=0.085;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:142,95:0.40:237
chr7	36729822	rs11427708	C	CA	1718.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:171,105:0.38:276
chr7	36729951	rs6462691	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr7	36763672	rs2228410	C	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:174,107:0.38:281
chr7	36934448	rs6462722	A	G	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	37073097	rs58163267	TA	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.840;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr7	37172594	rs5883589	AT	A	576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.824;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.936;QD=10.12;ReadPosRankSum=-0.633;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:14,43:0.75:57
chr7	37355590	rs11383031	C	CT	4468.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	37889786	rs10271309	A	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	37901581	rs2249451	G	A	8400.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr7	37903853	rs3816419	A	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	37903904	rs3816418	C	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	37904065	rs3841582	TAAC	T	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	37904099	rs3816417	G	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	37907304	rs10250905	T	C	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	37923849	rs1993052	G	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	37924737	rs1530822	T	G	5654.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	37924879	rs2242027	A	G	10049.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr7	37927779	rs2251179	T	G	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	37933983	rs10260487	C	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	37934146	rs56128139	TA	CT	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr7	37934234	rs10261071	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	37946958	rs17236975	A	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr7	37947103	rs1802074	C	T	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:126,93:0.42:219
chr7	37947164	rs1802073	G	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:113,84:0.43:197
chr7	37951726	rs1132553	G	A	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,75:0.64:118
chr7	37953720	rs2248554	C	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,46:0.34:136
chr7	37953840	rs1132552	C	T	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:317,161:0.34:478
chr7	37960262	rs201513905	AAGGCAGTGGCAGC	A	15786.73	.	AC=1;AF=0.500;AN=2;DB;DP=954;set=Intersection	GT:AD:AF:DP	0/1:245,405:0.62:650
chr7	37960955	rs4723716	T	G	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	37966201	rs12666164	T	C	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:55,76:0.58:131
chr7	37988589	rs2044831	C	T	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr7	37989775	rs1450851	T	C	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:82,62:0.43:144
chr7	38253923	rs3778894	C	A	3109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.878;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:110,148:0.57:258
chr7	38254140	rs3778893	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	38256938	rs6959603	C	T	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:179,86:0.32:265
chr7	38268395	rs7795499	C	T	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.033;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:90,69:0.43:159
chr7	38282130	rs35917252	G	GGT	5266.73	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:183,187:0.51:370
chr7	38282166	rs2009434	T	G	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:191,134:0.41:325
chr7	38284649	rs112543808	A	T	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:170,119:0.41:289
chr7	38284794	rs2008893	C	T	18427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-4.597;QD=22.23;ReadPosRankSum=0.391;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:350,479:0.58:829
chr7	38284804	rs4629747	T	C	18461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=813;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-6.007;QD=23.02;ReadPosRankSum=0.980;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:346,456:0.57:802
chr7	38284808	rs4434531	A	C	18181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-6.245;QD=22.90;ReadPosRankSum=0.537;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:340,454:0.57:794
chr7	38284834	rs67534383	A	G	15670.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:334,421:0.56:755
chr7	38284854	rs73360756	C	T	15059.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:305,390:0.56:695
chr7	38284902	rs200052170	A	G	6754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-8.885;QD=19.81;ReadPosRankSum=-8.639;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:169,172:0.50:341
chr7	38288831	rs58176718	T	C	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:124,155:0.56:279
chr7	38289121	rs1053756	C	T	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:312,174:0.36:486
chr7	38292853	rs55734725	C	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.327;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-4.656;QD=5.37;ReadPosRankSum=1.961;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:76,29:0.28:105
chr7	38292857	rs12701617	G	A	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	38292890	rs10267672	T	C	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	38292916	rs10252198	C	T	4941.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:28,206:0.88:234
chr7	38292926	rs12701618	C	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.762;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=24.522;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-10.497;QD=0.42;ReadPosRankSum=0.928;SOR=1.762;set=HC	GT:AD:AF:DP	0/1:242,31:0.11:273
chr7	38296130	rs6462828	T	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:75,56:0.43:131
chr7	38299727	rs138027161	T	C	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=47.42;MQRankSum=0.113;QD=5.39;ReadPosRankSum=-0.329;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:151,82:0.35:233
chr7	38301741	rs2392542	T	A	4515.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:437,246:0.36:683
chr7	38304926	rs3901405	C	T	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:129,82:0.39:211
chr7	38305142	rs113809137	G	C	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:392,202:0.34:594
chr7	38305340	rs2302343	A	G	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-7.813;QD=3.41;ReadPosRankSum=-1.565;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:92,25:0.21:117
chr7	38308946	rs2907767	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,53:0.66:80
chr7	38309102	rs2075010	A	C	9785.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr7	38313079	rs55819448	G	C	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:97,112:0.54:209
chr7	38356738	rs118093377	G	A	6758.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:227,308:0.58:535
chr7	38356838	rs111854601	G	T	10677.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:340,481:0.59:821
chr7	38356943	rs34482025	G	GA	2414.73	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:253,151:0.37:404
chr7	38357075	rs11769443	T	C	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:101,65:0.39:166
chr7	38388735	rs191612253	A	G	950.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.140;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.827;MLEAC=2;MLEAF=1.000;MQ=56.07;MQRankSum=2.665;QD=22.11;ReadPosRankSum=1.274;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr7	38388851	rs62445008	T	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,41:0.35:116
chr7	38388895	rs76205258	A	T	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:82,109:0.57:191
chr7	38389410	rs140194030	G	C	6549.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:165,278:0.63:443
chr7	38393278	rs76380259	GT	G	3403.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:71,135:0.66:206
chr7	38393319	rs201871758	A	G	4941.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:117,220:0.65:337
chr7	38393343	rs77429066	T	C	7165.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:154,303:0.66:457
chr7	38393390	rs73357290	T	G	11437.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:207,490:0.70:697
chr7	38393403	rs2017501	G	A	3511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.001;QD=4.84;ReadPosRankSum=0.627;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:512,214:0.29:726
chr7	38393424	rs73357292	G	A	11269.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:213,496:0.70:709
chr7	38393448	rs78292907	G	C	10766.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:189,470:0.71:659
chr7	38393524	rs73357293	C	T	8521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.192;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=2.614;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-0.709;QD=26.06;ReadPosRankSum=-0.181;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:105,222:0.68:327
chr7	38393534	rs74465876	C	T	8075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.365;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=8.609;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-0.150;QD=26.83;ReadPosRankSum=1.239;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:101,200:0.66:301
chr7	38393592	rs34822522	C	A	4165.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:120,170:0.59:290
chr7	38393654	rs147704672	T	G	4328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=7.514;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-0.244;QD=11.67;ReadPosRankSum=0.278;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:174,197:0.53:371
chr7	38393713	rs2215952	A	G	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:146,153:0.51:299
chr7	38393798	rs3999882	A	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr7	38397867	rs370983159	G	C	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.153;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.879;MLEAC=1;MLEAF=0.500;MQ=54.13;MQRankSum=0.924;QD=6.36;ReadPosRankSum=1.065;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr7	38397930	rs2392550	A	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.641;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=23.380;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-9.219;QD=5.28;ReadPosRankSum=-1.181;SOR=2.492;set=HC	GT:AD:AF:DP	0/1:92,35:0.28:127
chr7	38398564	rs1810377	A	G	3605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.652;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=5.337;QD=7.79;ReadPosRankSum=1.776;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:286,177:0.38:463
chr7	38398564	.	AG	GC	2206	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=56.41;NF=56;NR=98;PP=2206;QD=14.6718693173;SC=TAGAAGCACCAGTAGGGCCCA;SbPval=0.47;Source=Platypus;TC=443;TCF=156;TCR=287;TR=154;WE=38398573;WS=38398554;set=Platypus	GT:AD:AF:DP	0/1:289,154:0.35:443
chr7	38398565	rs2020451	G	C	16065.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr7	38398610	rs1808313	C	G	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:95,128:0.57:223
chr7	38402496	rs2735118	A	G	22520.77	.	AC=2;AF=1.00;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	1/1:0,812:1.00:812
chr7	38402781	rs2011898	A	G	9168.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr7	38424328	rs2810	T	C	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr7	38424663	rs62446763	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr7	38424702	rs34834299	T	TA	516.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr7	38429370	rs6977263	C	T	5449.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:190,249:0.57:439
chr7	38429552	rs36122520	T	A	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:62,107:0.63:169
chr7	38429572	rs35606872	GT	G	2515.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:52,73:0.58:125
chr7	38429584	rs34824107	C	G	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr7	38431415	rs55969455	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:58,67:0.54:125
chr7	38431644	rs79759611	G	GC	2196.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	38457688	rs10247761	C	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr7	38460546	rs1019287	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr7	38467842	rs1544636	A	G	21536.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	1/1:0,765:1.00:765
chr7	38467923	rs6958300	A	G	18073.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr7	38468463	rs2267808	C	T	10578.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr7	38468695	rs2392572	C	T	15160.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr7	38469039	rs2215955	C	A	5305.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:124,235:0.65:359
chr7	38469636	rs10253674	G	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	38471748	rs41279579	G	A	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:133,114:0.46:247
chr7	38471753	rs10232299	A	G	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:114,116:0.50:230
chr7	38505025	rs722334	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr7	38530568	rs2043786	G	T	3250.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:121,144:0.54:265
chr7	38530807	rs3837078	T	TA	2073.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:48,100:0.68:148
chr7	38543103	rs10225047	T	G	5185.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.01;ReadPosRankSum=-0.120;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:2,142:0.99:144
chr7	38543104	rs10268443	G	C	3129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.977;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=26.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.19;ReadPosRankSum=0.068;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:28,127:0.82:155
chr7	38543371	rs6946268	C	T	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	38574786	.	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.890;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr7	38725157	rs17416951	T	G	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr7	38725804	rs11980087	C	T	23202.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	1/1:0,824:1.00:824
chr7	38726347	rs62442615	G	A	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:51,116:0.69:167
chr7	38726473	rs17508140	T	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:89,44:0.33:133
chr7	38780883	rs6951429	C	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	38780924	rs6975410	T	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	38781018	rs3779128	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr7	38782944	rs11971020	A	G	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:53,112:0.68:165
chr7	38782951	rs10254567	G	A	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:125,60:0.32:185
chr7	38785062	rs28520398	G	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-0.639;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr7	38796748	rs2392599	C	T	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	38805079	rs140853804	TC	T	386.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr7	38805215	rs62444122	C	T	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:58,86:0.60:144
chr7	38810880	rs11431870	T	TA	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=0.825;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:25,36:0.59:61
chr7	38813711	rs976350	C	T	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr7	38816441	rs1468347	A	G	5072.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:133,213:0.62:346
chr7	38816487	rs4236355	G	A	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:62,95:0.61:157
chr7	38857364	rs2072248	G	A	4092.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:134,183:0.58:317
chr7	38860933	rs56002981	A	G	5152.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:129,221:0.63:350
chr7	38869708	rs7790054	C	T	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	38908876	rs3735346	T	C	1852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=13.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.210;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:320,124:0.28:444
chr7	39125413	rs1950001	T	G	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:152,94:0.38:246
chr7	39243750	rs4507668	A	G	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:130,113:0.47:243
chr7	39379325	rs2074936	C	T	4285.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:439,223:0.34:662
chr7	39500352	rs885689	C	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	39873126	.	A	AGCG	2398.73	.	AC=1;AF=0.500;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	0/1:83,63:0.43:146
chr7	40228031	rs60252112	T	TC	370.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	40314165	rs12669315	G	A	17538.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr7	40356305	rs73135029	G	A	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:86,101:0.54:187
chr7	41368666	.	T	TGAAAGAAA,TGAAAGAAAGAAA	1450.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.65;QD=51.81;SOR=4.407;set=HC	GT:AD:AF:DP	1/2:0,18,10:0.64,0.36:28
chr7	42004600	rs34089404	G	A	9543.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:303,428:0.59:731
chr7	42018391	rs17707162	C	T	5000.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:153,226:0.60:379
chr7	42064852	rs846273	C	G	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	42187734	rs113509347	GCACACA	G	738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.11;ReadPosRankSum=-0.082;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr7	42212180	rs2286293	C	T	3075.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:243,153:0.39:396
chr7	42262935	rs11266806	GA	G,GAA	681.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.202;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.557;QD=9.09;ReadPosRankSum=-0.286;SOR=0.973;set=HC	GT:AD:AF:DP	1/2:15,21,39:0.28,0.52:75
chr7	42950640	rs643138	C	T	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	42951515	rs647117	G	A	5788.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	42957465	rs71008875	ATT	A	1122.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	42970733	rs619664	C	T	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	42974827	rs601057	A	C	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	42976789	rs630191	A	G	14444.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr7	42977091	rs631132	G	A	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	43400656	.	CGTGT	CGTGCGTGTGT,C	395.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=67;set=Intersection	GT:AF:DP	0/1:0.33:36
chr7	43481974	rs11763383	C	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr7	43484310	rs73098706	T	C	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:95,180:0.65:275
chr7	43485248	rs6960889	A	G	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	43495878	rs3214631	C	CT	1625.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:57,75:0.57:132
chr7	43496138	rs2304331	T	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:73,85:0.54:158
chr7	43506015	rs2304330	C	A	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:90,142:0.61:232
chr7	43506059	rs2304329	A	G	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:107,156:0.59:263
chr7	43506158	rs2304328	T	C	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:69,83:0.55:152
chr7	43540264	rs2304325	A	G	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:147,213:0.59:360
chr7	43540513	rs78224160	A	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr7	43540782	rs71649293	CTTT	C	1046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=12.548;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.691;QD=15.17;ReadPosRankSum=0.331;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:26,43:0.62:69
chr7	43540887	rs17339479	A	C	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:104,137:0.57:241
chr7	43546604	rs7810051	A	G	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr7	43546617	rs117689113	C	T	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr7	43548516	rs2304323	C	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr7	43548857	rs9639877	T	C	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr7	43591832	rs56111512	G	A	3646.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:100,159:0.61:259
chr7	43591955	rs4724220	A	G	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	43594471	rs9638972	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr7	43659182	rs6950861	G	A	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	43908866	rs2730608	C	T	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=9.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.041;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:51,66:0.56:117
chr7	43916727	rs2232108	T	G	11542.77	.	AC=1;AF=0.500;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	0/1:342,499:0.59:841
chr7	43917013	rs2232105	G	A	12530.77	.	AC=1;AF=0.500;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	0/1:370,568:0.61:938
chr7	43917274	rs2232103	A	G	10699.77	.	AC=1;AF=0.500;AN=2;DB;DP=836;set=Intersection	GT:AD:AF:DP	0/1:342,491:0.59:833
chr7	43921477	rs73108120	A	G	12570.77	.	AC=1;AF=0.500;AN=2;DB;DP=1112;set=Intersection	GT:AD:AF:DP	0/1:503,606:0.55:1109
chr7	43945982	rs200939452	G	GC	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	43982341	rs2074728	G	C	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:40,103:0.72:143
chr7	43982482	rs2074727	A	C	5436.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:160,238:0.60:398
chr7	44027348	rs2330943	A	G	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:87,176:0.67:263
chr7	44084292	rs4430012	C	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:46,66:0.59:112
chr7	44097696	rs6968228	T	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr7	44144201	rs28362520	C	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr7	44145910	rs1558469	C	T	6360.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:151,283:0.65:434
chr7	44147485	rs2537188	C	A	6603.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:160,286:0.64:446
chr7	44147567	rs58863562	C	CG	9830.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr7	44148388	rs2075071	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	44148553	rs2595701	A	G	8854.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr7	44149374	rs11979310	T	A	4000.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:300,204:0.40:504
chr7	44151009	rs62460065	C	T	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr7	44152119	rs11377645	A	AG	5004.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	44152524	rs144604735	A	AG	4865.73	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:341,201:0.37:542
chr7	44152549	rs41279612	G	A	4863.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:393,250:0.39:643
chr7	44153082	rs67670401	G	GC	5114.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	44153115	rs34515254	G	GC	3284.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	44153780	rs13928	A	G	4045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=2.504;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:403,209:0.34:612
chr7	44154865	rs5883885	A	AG	10297.73	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr7	44156146	rs3087367	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr7	44157770	rs34484835	G	GC	3553.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	44178626	rs1008384	A	G	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:185,159:0.46:344
chr7	44180079	rs5883888	A	AG	11286.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	44180226	rs55908146	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr7	44185656	rs887688	G	T	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:275,154:0.36:429
chr7	44185786	rs5883890	GC	G	1046.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr7	44185805	rs887687	C	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr7	44189274	rs2268575	T	C	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:113,81:0.42:194
chr7	44189321	rs2268574	A	G	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:237,155:0.40:392
chr7	44190468	rs2268573	T	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr7	44243953	rs1476892	C	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr7	44247258	rs3824065	C	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr7	44250279	rs3837149	GCA	G	671.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr7	44250826	rs2072439	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr7	44259554	rs149624128	T	TG	3862.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	44259561	rs138799733	G	GC	4000.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	44259706	rs1065359	G	A	6341.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:141,280:0.67:421
chr7	44259871	rs1127065	C	T	6131.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:223,291:0.57:514
chr7	44266077	rs10951758	G	A	2557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.393;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:116,127:0.52:243
chr7	44268333	rs191414856	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr7	44268785	rs917791	A	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:87,58:0.40:145
chr7	44270764	rs13438284	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr7	44272314	rs5883896	G	GC	1078.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	44281475	rs2075073	T	A	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:124,80:0.39:204
chr7	44281702	rs35663812	A	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr7	44282369	rs35452037	T	C	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:128,90:0.41:218
chr7	44282868	rs11542228	A	G	3832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=0.060;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:172,106:0.38:278
chr7	44282877	rs11542227	A	G	3842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=1.126;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:187,107:0.36:294
chr7	44284564	rs2075069	A	G	5526.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:493,309:0.39:802
chr7	44284724	rs62459103	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:93,39:0.30:132
chr7	44294380	.	C	T	2276	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=1;MGOF=37;MMLQ=25;MQ=59.0;NF=3;NR=36;PP=2276;QD=59.2505439115;SC=CCAACTACCACCATCACCAGC;SbPval=1.0;Source=Platypus;TC=62;TCF=23;TCR=39;TR=39;WE=44294388;WS=44294358;set=Platypus	GT:AD:AF:DP	1/0:23,39:0.63:62
chr7	44364862	rs111242776	C	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr7	44442296	rs1473114	A	C	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	44467432	rs73105350	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=1.412;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr7	44530193	rs307007	T	G	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:288,195:0.40:483
chr7	44555573	rs217428	T	G	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:138,92:0.40:230
chr7	44557035	rs17711952	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr7	44561600	rs217421	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:61,26:0.30:87
chr7	44561901	rs217420	A	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:124,74:0.37:198
chr7	44579180	rs2072183	G	C	3885.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:410,202:0.33:612
chr7	44605729	.	TCCAC	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=20.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.437;SOR=0.001;set=HC	GT:AD:AF:DP	0/1:32,4:0.11:36
chr7	44607905	rs144290100	C	T	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr7	44619024	rs376816806	TG	T	846.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr7	44663890	.	G	GTT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.500;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr7	44800176	rs3735478	G	T	29764.77	.	AC=2;AF=1.00;AN=2;DB;DP=1106;set=Intersection	GT:AD:AF:DP	1/1:0,1098:1.00:1098
chr7	44802401	rs4720479	A	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	44839616	rs6463247	C	T	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	44839997	rs57466816	CT	C	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.805;QD=10.45;ReadPosRankSum=-0.990;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:13,44:0.77:57
chr7	44869537	rs1297837	C	T	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	44924627	rs6966024	A	C	22976.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:1,855:1.00:856
chr7	45083227	rs56961380	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.36;ReadPosRankSum=-0.734;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr7	45104131	rs11552377	G	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	45109658	rs55967204	G	C	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,38:0.39:97
chr7	45110290	rs28407510	G	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:37,60:0.62:97
chr7	45111482	rs1001349	A	T	16095.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr7	45112902	rs10272243	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	45114089	rs2289370	C	T	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	45120248	rs1132130	G	A	14982.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr7	45120453	rs10264280	C	T	16144.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr7	45122324	rs3735493	C	A	9067.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	45122464	rs10243185	A	C	12742.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr7	45122723	rs61740895	G	A	17086.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr7	45123925	.	C	T	979	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=3;HapScore=1;MGOF=27;MMLQ=22;MQ=48.42;NF=17;NR=19;PP=979;QD=28.1603114596;SC=CAGCCACAGGCTTTGGGGCTG;SbPval=0.45;Source=Platypus;TC=52;TCF=26;TCR=26;TR=36;WE=45123945;WS=45123915;set=Platypus	GT:AD:AF:DP	0/1:16,36:0.69:52
chr7	45123937	.	T	C	1293	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=1;MGOF=27;MMLQ=24;MQ=52.01;NF=28;NR=21;PP=1293;QD=27.0973716846;SC=TTGGGGCTGATGAGAGATCTG;SbPval=0.6;Source=Platypus;TC=62;TCF=35;TCR=27;TR=49;WE=45123945;WS=45123915;set=Platypus	GT:AD:AF:DP	0/1:13,49:0.79:62
chr7	45124008	rs7777835	T	C	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	45124286	rs3735494	A	G	11292.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr7	45124465	rs3735495	A	T	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr7	45125775	rs9791417	G	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	45139892	rs4553	G	A	8239.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr7	45139919	rs2289373	A	C	10104.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr7	45142834	rs2289374	G	C	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	45143090	rs59494919	G	GGACAGCC	5217.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	45143093	.	C	G	4766.77	.	AC=2;AF=1.00;AN=2;DP=104;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	45143108	rs2119056	T	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	45144403	rs2289375	C	T	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	45144494	rs2289376	T	C	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	45151120	rs117579496	T	A	6470.77	.	AC=1;AF=0.500;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	0/1:596,336:0.36:932
chr7	45216761	rs1294940	G	A	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	45697295	rs2461131	C	G	9084.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.35;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	45697295	.	CCT	GCC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=121;NR=54;PP=2947;QD=20;SC=CAAGGTGGGCCCTAGCCCCAC;SbPval=0.58;Source=Platypus;TC=185;TCF=126;TCR=59;TR=175;WE=45697305;WS=45697285;set=Platypus	GT:AD:AF:DP	1/1:10,175:0.95:185
chr7	45697297	rs2471231	T	C	9084.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=1.531;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	45703971	rs1042009	G	A	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	45724696	rs2461106	T	C	4501.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:158,211:0.57:369
chr7	45743128	rs2247685	T	G	31308.77	.	AC=2;AF=1.00;AN=2;DB;DP=1197;set=Intersection	GT:AD:AF:DP	1/1:1,1191:1.00:1192
chr7	45743403	rs2461114	G	A	8143.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr7	45932669	rs4619	A	G	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	45954679	rs34091405	AAC	A	1142.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr7	45954692	rs10255707	T	C	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr7	45957055	rs2471551	G	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:78,48:0.38:126
chr7	45957161	rs143703989	GT	G	129.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr7	45960323	rs6950868	C	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	46728937	rs1404727	T	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:199,110:0.36:309
chr7	46732428	rs700747	A	G	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr7	46732627	rs1917602	A	T	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr7	46736733	rs71003346	GA	G	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	46736782	.	ATT	A	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=1.065;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr7	46736787	.	T	TA	231	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=6;HapScore=4;MGOF=21;MMLQ=28;MQ=60.57;NF=0;NR=7;PP=231;QD=36.0;SC=AGAGCATTTTTTTAAAAAAAT;SbPval=1.0;Source=Platypus;TC=10;TCF=1;TCR=9;TR=7;WE=46736797;WS=46736777;set=Platypus	GT:AD:AF:DP	1/0:3,7:0.70:10
chr7	46736788	.	TT	AA	200	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=6;HapScore=4;MGOF=21;MMLQ=28;MQ=60.4;NF=3;NR=4;PP=200;QD=36.2096964089;SC=GAGCATTTTTTTAAAAAAATC;SbPval=0.66;Source=Platypus;TC=18;TCF=8;TCR=10;TR=7;WE=46736797;WS=46736777;set=Platypus	GT:AD:AF:DP	1/0:11,7:0.39:18
chr7	46736789	rs150183242	T	TAAA	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=0.248;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	47319723	rs4720590	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr7	47323456	rs3750164	A	G	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:231,147:0.39:378
chr7	47342497	rs3750166	C	T	1935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.50;ReadPosRankSum=-0.321;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:28,51:0.65:79
chr7	47342500	rs3750167	C	G	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=-0.146;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:30,53:0.64:83
chr7	47343083	rs3807589	C	T	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:80,175:0.69:255
chr7	47408029	rs2255744	A	G	6811.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr7	47408974	rs1534136	T	A	14650.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr7	47436497	rs17544028	G	A	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:90,130:0.59:220
chr7	47436558	rs2177795	A	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	47451295	rs834607	A	G	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr7	47463842	rs834599	T	G	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	47467864	rs1799370	C	T	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	47479363	rs1810137	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	47481786	rs1620852	A	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	47568718	rs10261525	C	T	7861.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:259,364:0.58:623
chr7	47578772	rs334506	T	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	47596534	rs6954946	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	47596775	rs615300	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr7	47698685	rs12531737	A	G	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:158,93:0.37:251
chr7	47835027	rs9719534	A	G	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:23,79:0.77:102
chr7	47840510	rs1466203	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,54:0.61:88
chr7	47847679	rs1074780	G	A	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	47851654	rs73103467	A	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,69:0.47:148
chr7	47853498	rs6463449	C	T	11813.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:3,466:0.99:469
chr7	47859239	rs3757379	C	A	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=5.557;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.380;QD=15.46;ReadPosRankSum=-1.102;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:36,59:0.62:95
chr7	47869038	rs7788583	T	C	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-2.251;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:133,77:0.37:210
chr7	47869751	rs6463451	C	T	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr7	47872845	rs921634	A	G	5967.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	47874062	rs34069037	G	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:140,121:0.46:261
chr7	47874630	rs66755489	G	A	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:176,110:0.38:286
chr7	47884539	rs6950328	G	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:117,63:0.35:180
chr7	47884555	rs13237611	A	G	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:84,140:0.62:224
chr7	47884829	rs1980279	C	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr7	47886707	rs10280228	G	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:72,46:0.39:118
chr7	47898222	rs34177211	T	TG	1695.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:107,68:0.39:175
chr7	47904737	rs1554495	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr7	47913579	rs1470859	T	C	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:314,176:0.36:490
chr7	47921682	rs10951936	A	T	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:78,61:0.44:139
chr7	47921785	.	T	TCG	592.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.312;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=0.171;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr7	47921786	.	GCT	G	629.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.047;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr7	47921798	rs12702396	C	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=0.417;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr7	47921824	rs12702397	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr7	47924454	rs10464386	G	A	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	47925331	rs10274334	C	G	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	47943953	rs11766212	C	T	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:151,113:0.43:264
chr7	47947863	rs1474283	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	47968927	rs2686817	C	A	16130.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr7	47971575	rs885337	A	G	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	47976287	rs2708878	A	G	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	47979922	rs2708913	A	G	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:8,115:0.93:123
chr7	48004962	rs1056663	C	T	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	48005122	rs2037483	G	A	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr7	48008974	rs3176580	A	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr7	48009018	rs953595	AA	GT	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	48010978	rs2708864	T	C	7553.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	48017965	rs2242477	C	T	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	48017989	rs2242478	T	C	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	48018455	rs2242479	T	A	5892.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	48028512	rs3736547	G	C	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:158,121:0.43:279
chr7	48035893	rs2708899	T	C	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	48086077	rs2708912	C	T	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	48086161	rs10233232	T	C	9104.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr7	48089394	rs909059	T	C	10511.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr7	48089542	rs2686788	T	C	9172.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr7	48089571	rs2708890	C	A	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	48092257	rs142301868	C	A	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:55,110:0.67:165
chr7	48092486	rs2686791	T	C	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	48092847	rs2686792	C	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	48211301	rs141832114	C	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	48232530	.	A	AT	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.438;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:72,38:0.35:110
chr7	48237802	rs2188	C	T	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:126,86:0.41:212
chr7	48260869	rs10252745	T	G	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr7	48269679	rs60553397	G	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	48273869	rs7357106	T	C	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	48313510	rs17547830	A	G	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	48314798	rs13233225	G	T	13769.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr7	48317683	rs10246853	A	T	1291.80	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:4,47:0.92:51
chr7	48412112	.	T	TA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=3.276;QD=1.08;ReadPosRankSum=0.389;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr7	48415892	rs2163938	A	G	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr7	48467355	rs13233421	T	C	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=0.730;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:88,64:0.42:152
chr7	48467581	rs13243091	T	C	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=17.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=0.280;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:121,68:0.36:189
chr7	48467634	rs34541457	T	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr7	48467653	rs34529024	GAA	G	475.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr7	48506416	rs4917151	G	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr7	48511297	rs7810026	T	C	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:77,40:0.34:117
chr7	48520780	rs4472462	A	T	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:249,158:0.39:407
chr7	48522845	rs1918584	CA	GG	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;JOINED;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr7	48545976	rs6583448	A	G	8230.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr7	48654769	rs10046546	A	G	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:69,117:0.63:186
chr7	48684185	rs150970044	CTT	C	861.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.73;ReadPosRankSum=0.603;SOR=0.542;set=HC	GT:AD:AF:DP	1/1:10,36:0.78:46
chr7	48886140	rs62454384	T	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.512;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=12.439;MLEAC=1;MLEAF=0.500;MQ=54.81;MQRankSum=-13.990;QD=0.86;ReadPosRankSum=-3.739;SOR=1.608;set=HC	GT:AD:AF:DP	0/1:468,74:0.14:542
chr7	48886193	rs3814470	G	A	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.477;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-11.925;QD=1.20;ReadPosRankSum=-0.800;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:466,85:0.15:551
chr7	48886487	rs62454385	T	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=13.311;MLEAC=1;MLEAF=0.500;MQ=45.74;MQRankSum=-0.874;QD=1.60;ReadPosRankSum=-2.254;SOR=1.699;set=HC	GT:AD:AF:DP	0/1:190,37:0.16:227
chr7	48886648	rs71537796	G	A	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:208,73:0.26:281
chr7	48886746	rs4320498	C	T	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:346,128:0.27:474
chr7	48887548	rs4404869	G	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:209,81:0.28:290
chr7	48964172	rs6945680	G	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr7	48964209	rs58317831	TG	T	2262.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr7	48964255	rs6968293	A	C	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:63,133:0.68:196
chr7	48964322	rs11767646	G	T	5135.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:111,222:0.67:333
chr7	48965000	rs10259692	G	A	6202.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:164,255:0.61:419
chr7	48965427	rs145470654	A	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:298,92:0.24:390
chr7	49815390	rs769604	C	G	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:152,90:0.37:242
chr7	49815474	rs73347631	C	T	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=5.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.602;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:244,133:0.35:377
chr7	49815493	rs61390655	C	G	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:258,140:0.35:398
chr7	49951519	rs10639154	G	GCACACACA,GCACACACACACACACA	1190.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	1/1:1.00:17
chr7	49951544	rs7792519	T	C	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr7	50023122	rs988392	C	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	50070921	rs1351691	C	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	50144059	rs3034461	T	TTA	3777.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:4,104:0.96:108
chr7	50156916	rs6959792	C	G	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	50169508	rs1456900	G	A	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	50169595	rs1456899	T	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	50173777	rs998928	A	G	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:131,183:0.58:314
chr7	50175654	rs12718244	G	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:119,65:0.35:184
chr7	50175681	rs12672941	C	T	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:68,109:0.62:177
chr7	50179609	rs1993445	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	50180972	rs1456908	C	T	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:380,271:0.42:651
chr7	50191216	rs10260654	G	T	6578.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:203,279:0.58:482
chr7	50198626	rs4917120	T	C	10799.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr7	50435617	rs11766800	A	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr7	50435777	rs12669559	T	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:225,135:0.38:360
chr7	50436033	rs10899750	A	G	7259.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	50512857	rs10230307	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr7	50512929	rs10230343	C	A	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,85:0.52:162
chr7	50537677	rs11378977	C	CA	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.325;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:65,39:0.38:104
chr7	50537983	rs3757472	A	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:135,80:0.37:215
chr7	50544269	rs5884156	AG	A	985.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr7	50545191	rs4992502	C	A	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:132,79:0.37:211
chr7	50547363	.	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.963;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=1.352;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	50547584	rs11575457	A	C	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.671;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:55,25:0.31:80
chr7	50547661	rs11575456	AGCCCT	A	542.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr7	50566671	rs3807562	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr7	50566762	rs2876829	C	T	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:67,75:0.53:142
chr7	50596864	rs3735273	C	T	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr7	50597056	rs6950777	G	A	3434.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:139,159:0.53:298
chr7	50611735	rs6264	T	C	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr7	50663299	rs10629421	T	TACACACAC,TACACACACAC	959.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.67;QD=50.51;SOR=1.981;set=HC	GT:AD:AF:DP	1/2:0,12,7:0.63,0.37:19
chr7	50671481	rs7456867	C	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	50672907	rs4947709	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,26:0.33:78
chr7	50673029	rs4947710	T	C	9166.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr7	50685625	rs2240498	A	C	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=8.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-2.305;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:83,33:0.28:116
chr7	50694457	rs1468450	A	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr7	50737384	rs2072235	C	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,71:0.69:103
chr7	50742118	rs2715128	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr7	50799889	rs2074777	C	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	50800169	rs2108350	T	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	51085127	rs3214180	A	AT	2401.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:131,105:0.44:236
chr7	51093013	rs2240087	A	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=1.180;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:104,41:0.28:145
chr7	51094216	rs2285841	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr7	51096147	rs61739182	A	G	4000.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:403,218:0.35:621
chr7	51097063	rs10230120	T	G	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:222,133:0.37:355
chr7	51097216	rs17656599	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:161,80:0.33:241
chr7	51153024	rs59837144	GT	G	1948.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.059;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.445;QD=11.40;ReadPosRankSum=0.693;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:115,56:0.33:171
chr7	51153027	.	CAATCAAAGTACTTTGTACCTATGAAGTACAAAGA	C	1929.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.655;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.452;QD=11.42;ReadPosRankSum=0.324;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:114,55:0.33:169
chr7	51153056	.	CAAAGA	C	2943	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=4;HapScore=1;MGOF=4;MMLQ=28;MQ=58.31;NF=3;NR=22;PP=2943;QD=20;SC=CTATGAAGTACAAAGAAGGCA;SbPval=0.26;Source=Platypus;TC=71;TCF=5;TCR=66;TR=25;WE=51153069;WS=51153014;set=Platypus	GT:AD:AF:DP	1/0:46,25:0.35:71
chr7	51287470	rs801142	A	G	9852.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr7	53103425	rs10229800	C	A	6730.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:230,314:0.58:544
chr7	53103554	rs11238247	C	G	4658.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:330,230:0.41:560
chr7	53103571	rs11238248	G	A	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:292,184:0.39:476
chr7	53103794	rs73357087	C	T	5372.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:168,231:0.58:399
chr7	53103946	rs12113170	G	C	5542.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:394,270:0.41:664
chr7	54614585	rs657449	A	G	7315.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	54614698	rs11432820	C	CG	13701.73	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:2,519:1.00:521
chr7	54823418	rs139506119	T	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:75,48:0.39:123
chr7	55086780	rs712830	A	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	55214348	rs2072454	C	T	13866.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr7	55218903	rs2075109	T	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	55219159	rs2075110	C	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	55220177	rs11506105	A	G	11079.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr7	55228053	rs1558544	A	T	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	55229255	rs2227983	G	A	8132.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	55233863	rs9649769	A	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	55238268	rs10228436	G	A	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	55238874	rs2227984	T	A	9806.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr7	55240461	rs2241055	G	C	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	55242609	rs2017000	A	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	55249063	rs1050171	G	A	14491.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr7	55266417	rs1140475	T	C	13566.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,525:1.00:525
chr7	55272826	rs2692456	G	A	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	55433790	rs61749018	C	T	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.742;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:299,116:0.28:415
chr7	55433880	rs2272262	G	C	10227.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	55433884	rs2272263	A	C	10051.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	55466002	rs6973684	T	C	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	55467923	rs2272226	G	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	55468773	rs815929	C	A	1445.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	55499058	rs815988	A	G	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	55499079	rs75177017	C	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr7	55540791	rs712819	G	C	8882.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	55565247	.	TGGGG	T,TG	735.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.79;SOR=4.615;set=HC	GT:AD:AF:DP	1/2:0,13,7:0.65,0.35:20
chr7	55759300	rs142045864	C	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr7	55832429	rs146909187	G	GT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-0.099;QD=1.49;ReadPosRankSum=0.791;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr7	55910600	.	C	CA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=3.844;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.931;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr7	55912185	rs4294144	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:61,40:0.40:101
chr7	55991144	rs2135116	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr7	55991292	rs2174460	GT	AC	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;JOINED;set=Intersection	GT:AD:AF:DP	0/1:55,55:0.50:110
chr7	56007576	rs34016595	C	T	5127.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:342,253:0.43:595
chr7	56022981	rs15892	T	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr7	56051672	.	T	TTATATGTATA	441	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=441;QD=231.0;SC=ATGTCTAGCATTATATGTATA;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=2;WE=56051680;WS=56051662;set=Platypus	GT:AD:AF:DP	1/0:14,2:0.12:16
chr7	56052410	rs56108005	CAA	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=12.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=-0.000;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr7	56059456	.	A	ATAT	606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.000;QD=2.96;ReadPosRankSum=3.281;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:129,76:0.37:205
chr7	56059458	rs11562101	A	T	5625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.695;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.000;QD=23.54;ReadPosRankSum=4.254;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:81,158:0.66:239
chr7	56059591	rs10435504	G	C	7674.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:276,342:0.55:618
chr7	56082622	rs7801405	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.349;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=0.043;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:4,24:0.86:28
chr7	56119730	rs3735665	T	A	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-0.400;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:41,67:0.62:108
chr7	56122058	rs6593297	A	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr7	56126360	rs2230197	T	C	6724.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:198,320:0.62:518
chr7	56131910	rs62457279	C	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr7	56136194	rs7808729	C	T	3918.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:102,179:0.64:281
chr7	56136260	rs4245575	C	A	10182.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr7	56142161	rs117523577	C	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr7	56142519	rs4948104	A	G	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:58,84:0.59:142
chr7	56146310	rs11765364	T	C	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:59,86:0.59:145
chr7	56149362	rs11238393	C	T	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,77:0.56:137
chr7	56149410	rs12538444	G	A	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:105,147:0.58:252
chr7	56151489	rs2242508	A	G	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:418,228:0.35:646
chr7	56151533	rs62457291	A	G	6783.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:164,297:0.64:461
chr7	56155219	rs6945795	C	T	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:44,74:0.63:118
chr7	56174115	rs10043	A	C	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.973;QD=5.78;ReadPosRankSum=-2.180;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:191,98:0.34:289
chr7	56174140	rs816407	G	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:252,124:0.33:376
chr7	56879403	rs10277636	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr7	56879426	rs12671117	C	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr7	56879440	rs12671133	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr7	56879552	rs10277871	T	C	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.487;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr7	56879558	rs192201290	C	G	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.11;ReadPosRankSum=0.228;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr7	56879668	rs12671601	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-1.673;QD=9.46;ReadPosRankSum=-1.088;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	56879694	rs12667117	G	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-1.382;QD=11.80;ReadPosRankSum=0.730;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr7	57069669	rs1467279	T	C	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.32;QD=30.44;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	57069910	rs7455704	C	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=5.166;QD=4.43;ReadPosRankSum=3.272;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:65,26:0.29:91
chr7	57069935	rs1966122	G	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr7	57071494	.	G	T	103	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=3;HapScore=2;MGOF=7;MMLQ=24;MQ=53.88;NF=7;NR=0;PP=103;QD=19.6816017925;SC=GCTATCACCCGGCGGCCGGCA;SbPval=1.0;Source=Platypus;TC=31;TCF=21;TCR=10;TR=7;WE=57071502;WS=57071484;set=Platypus	GT:AD:AF:DP	0/1:24,7:0.23:31
chr7	57071540	rs28370313	A	G	31.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr7	57071650	.	G	GAGCAGCAGCAGC	740.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=3.169;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-5.485;QD=12.14;ReadPosRankSum=-3.956;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr7	57071671	rs187876791	T	C	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:65,41:0.39:106
chr7	57071725	rs62463099	C	T	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:58,75:0.56:133
chr7	57188016	rs78588121	A	G	8151.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:299,390:0.57:689
chr7	57188718	rs62464802	T	C	10806.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:269,479:0.64:748
chr7	57233554	rs34820155	G	C	5889.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:168,268:0.61:436
chr7	57245247	rs11763159	A	G	5220.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:127,231:0.65:358
chr7	57528997	rs10272498	T	C	9175.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:278,408:0.59:686
chr7	57529392	rs13235676	A	C	10516.77	.	AC=1;AF=0.500;AN=2;DB;DP=903;set=Intersection	GT:AD:AF:DP	0/1:403,491:0.55:894
chr7	63033167	.	T	TGAG	1680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.923;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=7.576;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-4.132;QD=12.36;ReadPosRankSum=2.171;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:87,49:0.36:136
chr7	63033229	.	T	TACGGCCCCCGGCGCC	2140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-8.368;QD=12.74;ReadPosRankSum=-4.482;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:120,48:0.29:168
chr7	63033297	rs111637000	C	T	1056.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-1.181;QD=2.89;ReadPosRankSum=0.673;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:286,80:0.22:366
chr7	63033298	.	C	CGCT	2125.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=4.458;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-2.110;QD=6.25;ReadPosRankSum=1.138;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:227,113:0.33:340
chr7	63529450	rs35929359	CT	C	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.436;QD=3.18;ReadPosRankSum=1.236;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:115,48:0.29:163
chr7	63529956	rs4349869	G	A	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:141,167:0.54:308
chr7	63537638	rs34875861	CT	C	1280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.297;QD=8.00;ReadPosRankSum=-1.510;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:73,87:0.54:160
chr7	63537849	rs4717170	G	A	10461.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:271,465:0.63:736
chr7	63673608	rs10252019	C	T	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:389,234:0.38:623
chr7	63679733	rs10270226	A	G	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:221,123:0.36:344
chr7	63680098	rs4479992	CC	TA	6994.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;JOINED;set=Intersection	GT:AD:AF:DP	0/1:361,195:0.35:556
chr7	63721420	rs17767341	A	G	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:98,68:0.41:166
chr7	63796744	rs58656578	T	C	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:326,206:0.39:532
chr7	63796822	rs60337982	AT	A	1953.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:123,110:0.47:233
chr7	63796835	rs7787036	T	C	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:104,114:0.52:218
chr7	63797256	rs2086168	A	C	2706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.493;QD=12.36;ReadPosRankSum=1.402;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:87,132:0.60:219
chr7	63808867	rs11976837	C	A	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:239,174:0.42:413
chr7	63981563	rs10243954	A	G	10130.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:1,397:1.00:398
chr7	63986829	rs73128772	G	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	64023371	rs6969879	T	C	16199.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr7	64023437	rs6965883	A	G	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr7	64166642	rs35661712	T	TG	4834.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	64169019	rs4717205	G	A	14029.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr7	64169061	rs4717206	G	A	10786.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr7	64254791	rs10949938	G	T	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:243,180:0.43:423
chr7	64254901	rs11983033	T	C	8354.77	.	AC=1;AF=0.500;AN=2;DB;DP=1089;set=Intersection	GT:AD:AF:DP	0/1:655,432:0.40:1087
chr7	64275284	rs7809431	C	T	21335.77	.	AC=2;AF=1.00;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	1/1:30,809:0.96:839
chr7	64275470	.	A	AT	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DP=498;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.338;QD=0.93;ReadPosRankSum=0.963;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:300,75:0.20:375
chr7	64275548	rs10236928	A	G	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	64276089	rs9654821	A	G	17924.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr7	64291225	rs6460193	G	T	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	64291244	rs7787287	T	C	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:86,85:0.50:171
chr7	64291267	rs6460194	A	T	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	64291333	rs4483043	T	A	11980.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr7	64291976	rs10949946	G	A	5314.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:155,231:0.60:386
chr7	64291991	rs4236203	T	A	9923.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	64363965	.	C	T	2734.77	.	AC=1;AF=0.500;AN=2;DP=195;set=Intersection	GT:AD:AF:DP	0/1:85,108:0.56:193
chr7	64378806	rs7796966	C	T	3357.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:76,130:0.63:206
chr7	64389089	rs2017252	A	C	10956.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:2,404:1.00:406
chr7	64437406	rs4607487	A	G	22646.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:2,822:1.00:824
chr7	64438403	rs4718175	G	A	10843.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr7	64438667	rs1404453	G	A	26385.77	.	AC=2;AF=1.00;AN=2;DB;DP=962;set=Intersection	GT:AD:AF:DP	1/1:1,957:1.00:958
chr7	64439938	rs1852016	C	T	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	64441632	rs74364613	A	AT	1416.73	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:172,102:0.37:274
chr7	64451699	rs4717229	T	C	12048.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr7	64451963	rs4618579	T	C	8395.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr7	64452738	rs67047829	G	A	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:154,109:0.41:263
chr7	64452830	rs34639489	C	T	12027.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr7	64453136	rs6460219	G	A	7415.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr7	64535312	rs71533998	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.40;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	64639915	rs368760026	AC	A	2149.74	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:12,70:0.85:82
chr7	64639926	rs80126668	C	G	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.80;MQRankSum=-3.871;QD=13.96;ReadPosRankSum=-0.914;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:35,48:0.58:83
chr7	64864894	rs7796776	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	65084152	rs6978207	C	T	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	65150824	rs202004878	C	CCG	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.50;MQRankSum=2.655;QD=13.30;ReadPosRankSum=-0.366;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	65419353	.	T	TTTA	2600.73	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:6,65:0.92:71
chr7	65425894	rs9530	A	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	65426054	.	CA	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=3.748;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.716;QD=1.93;ReadPosRankSum=1.383;SOR=1.156;set=HC	GT:AD:AF:DP	0/1:51,22:0.30:73
chr7	65439879	rs781143	G	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	65440835	.	C	CA	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.266;QD=2.69;ReadPosRankSum=-1.259;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr7	65444359	rs139791587	T	TGA	1439.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	65551931	rs313830	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	65552230	rs60878697	CGT	C	1903.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=25.05;ReadPosRankSum=0.473;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:7,69:0.91:76
chr7	65552497	rs313829	A	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	65552614	rs313828	T	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	65554352	rs160647	C	T	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	65579987	rs160639	C	G	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	65599196	rs2243480	G	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=26.19;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	65599246	rs5884583	CT	C	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;QD=18.66;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	65817333	rs709595	G	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	65841981	rs6974355	A	G	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	65842128	rs11769079	G	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	65842221	rs11765965	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	65842543	rs112115083	C	CAT	10208.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	65842545	rs3815685	T	C	10217.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr7	66136372	rs148855688	G	GACC	2200.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	66136549	rs2707832	G	A	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	66147697	rs5884599	A	AG	3824.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=32.97;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	66262515	rs201990633	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.925;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr7	66409881	rs35111158	A	G	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	66459180	rs186000847	T	C	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:79,147:0.65:226
chr7	66463195	rs145124227	A	AT	1285.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:39,76:0.66:115
chr7	66479597	rs6968334	C	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:127,71:0.36:198
chr7	66520726	.	CAAA	C	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-4.528;QD=6.74;ReadPosRankSum=0.739;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr7	66520741	.	A	ATT	1050.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-4.865;QD=22.36;ReadPosRankSum=0.732;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:17,30:0.64:47
chr7	66532235	rs2711910	A	G	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:73,89:0.55:162
chr7	66582460	rs35171532	T	A	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.326;QD=14.62;ReadPosRankSum=-1.118;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:37,63:0.63:100
chr7	66648029	rs57386346	G	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,45:0.46:98
chr7	66648030	rs2948336	A	G	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr7	66648157	rs4145350	C	T	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:126,154:0.55:280
chr7	66648199	rs55756354	G	A	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:130,165:0.56:295
chr7	66660045	rs55921608	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr7	66660078	rs56035776	T	C	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr7	66660242	rs2949097	A	G	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.513;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=-11.305;QD=13.90;ReadPosRankSum=-0.855;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:96,59:0.38:155
chr7	66660247	rs55673383	T	C	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.622;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.117;MLEAC=1;MLEAF=0.500;MQ=53.05;MQRankSum=-11.873;QD=13.58;ReadPosRankSum=-0.512;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:93,57:0.38:150
chr7	66660360	rs34574768	C	T	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,73:0.54:135
chr7	66660377	rs35290283	C	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:49,66:0.57:115
chr7	66703238	rs201456718	A	AT	684.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr7	66703328	rs139935023	G	A	3174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.661;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=4.383;MLEAC=1;MLEAF=0.500;MQ=48.95;MQRankSum=0.481;QD=15.12;ReadPosRankSum=-0.089;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:82,128:0.61:210
chr7	66762050	rs10245535	A	T	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:40,93:0.70:133
chr7	66773745	rs7791853	G	T	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr7	66774157	rs2041575	T	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr7	66774604	rs1045513	G	C	2434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-2.591;QD=13.99;ReadPosRankSum=0.448;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:60,114:0.66:174
chr7	66785029	rs2537522	G	T	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr7	66785137	rs9443	C	A	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-4.432;QD=13.46;ReadPosRankSum=1.918;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:51,82:0.62:133
chr7	69583231	.	TA	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.583;QD=5.28;ReadPosRankSum=2.189;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr7	70193932	rs4718987	T	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr7	70194024	rs4718988	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr7	70229595	rs1983487	T	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	70229715	rs67892322	T	C	1972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=0.221;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:39,87:0.69:126
chr7	70231070	rs2293509	C	T	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:153,81:0.35:234
chr7	70233139	rs3750170	G	A	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.124;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.203;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:250,93:0.27:343
chr7	70249728	.	TAAAAAAAAA	T	714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=16.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.08;ReadPosRankSum=1.274;SOR=3.590;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr7	70249868	rs3817575	G	A	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=2.283;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:231,96:0.29:327
chr7	70249908	rs2293504	C	T	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:224,98:0.30:322
chr7	70252185	rs2293500	A	G	1745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.016;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:392,127:0.24:519
chr7	70255115	rs113194983	C	T	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:148,78:0.35:226
chr7	70597675	rs6957446	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	70598059	rs2903458	A	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	70772565	rs55690472	A	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	70800407	rs13240200	T	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	70885883	rs11455717	C	CT	8658.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	70886107	rs11455716	G	GC	3499.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	71036473	rs10277319	C	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	71135192	rs2302440	A	G	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:24,81:0.77:105
chr7	71142336	.	C	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.766;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:84,17:0.17:101
chr7	71176900	rs887584	G	A	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:33,91:0.73:124
chr7	71253041	rs736145	T	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr7	71571436	rs10950296	G	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	72040764	rs141509781	A	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:64,27:0.30:91
chr7	72081634	rs200419457	T	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=4.648;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-9.529;QD=0.63;ReadPosRankSum=-2.137;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:213,33:0.13:246
chr7	72093957	rs28535321	A	G	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	72094075	rs2298399	C	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr7	72178848	rs138896426	A	G	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-1.349;QD=4.08;ReadPosRankSum=-2.493;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:115,39:0.25:154
chr7	72193864	rs3015858	T	C	8505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=6.979;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-2.566;QD=26.33;ReadPosRankSum=2.745;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:112,211:0.65:323
chr7	72193868	rs2960999	G	A	8546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=6.095;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-2.317;QD=25.98;ReadPosRankSum=1.739;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:113,216:0.66:329
chr7	72209527	rs11354897	CA	C	8602.73	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:162,268:0.62:430
chr7	72267637	rs200906243	C	CT	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;MQ=60.74;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr7	72277630	rs67852668	C	A	3720.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:64,157:0.71:221
chr7	72277981	rs2286317	T	C	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:65,157:0.71:222
chr7	72280978	rs11281952	G	GTGTGTT	2965.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr7	72281355	rs35534997	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr7	72297549	rs73131518	G	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:146,65:0.31:211
chr7	72304470	rs5884895	GT	G	1172.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr7	72413443	rs62463429	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.263;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-4.247;QD=0.81;ReadPosRankSum=2.078;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:220,34:0.13:254
chr7	72413723	.	T	TCTC	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.561;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=36.960;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-7.129;QD=4.60;ReadPosRankSum=-1.130;SOR=3.576;set=HC	GT:AD:AF:DP	0/1:148,32:0.18:180
chr7	72416333	rs237934	C	G	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	72418963	rs7056	T	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:168,66:0.28:234
chr7	72419402	rs116864609	C	A	2045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=3.267;QD=5.56;ReadPosRankSum=3.245;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:253,115:0.31:368
chr7	72425626	.	G	GTATA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-0.210;QD=9.96;ReadPosRankSum=-1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	72613683	.	TA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=47.70;MQRankSum=-3.959;QD=1.22;ReadPosRankSum=-0.231;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr7	72711867	rs62465076	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	72711986	rs62465077	G	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.82;QD=46.21;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	72711991	rs62465078	C	T	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.41;QD=39.55;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	72712121	rs62465079	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.80;QD=27.14;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	72717933	rs11544043	C	T	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:43,86:0.67:129
chr7	72719019	rs35747107	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.865;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.97;MQRankSum=0.394;QD=6.07;ReadPosRankSum=-0.100;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr7	72738350	rs55963844	C	CG	2872.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	72738749	rs28626137	A	G	7504.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	72738762	rs6980258	CA	TG	7018.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	72750627	rs4717751	G	A	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	72861849	rs2237279	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	72891754	rs2074754	C	T	9968.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr7	72957680	.	G	T	175.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	72984780	rs14415	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr7	72985148	rs35607697	C	T	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:290,135:0.32:425
chr7	72987354	rs2286276	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr7	72990917	rs117727333	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:64,25:0.28:89
chr7	72991052	.	A	C	2357.77	.	AC=1;AF=0.500;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	0/1:37,101:0.73:138
chr7	73011060	rs41271232	C	T	1320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=-0.821;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:34,65:0.66:99
chr7	73012051	rs73702541	G	T	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-1.290;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:17,42:0.71:59
chr7	73019975	rs61010704	A	G	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:21,77:0.79:98
chr7	73020210	rs6967107	C	A	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:69,124:0.64:193
chr7	73020301	rs799157	T	C	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	73022183	.	C	CT	35.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=-0.000;DP=40;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.58;ReadPosRankSum=-0.000;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	73022211	.	G	A	328	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=28;MQ=54.92;NF=1;NR=14;PP=328;QD=24.1847475031;SC=TTGGAGATAGGGTTTCACTCT;SbPval=0.87;Source=Platypus;TC=30;TCF=4;TCR=26;TR=15;WE=73022219;WS=73022201;set=Platypus	GT:AD:AF:DP	1/0:15,15:0.50:30
chr7	73083889	rs61743139	C	T	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.781;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:53,89:0.63:142
chr7	73096993	rs8891	T	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr7	73097654	rs1128349	C	T	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:92,160:0.63:252
chr7	73112057	rs369894399	TG	T	4061.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=30.77;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	73118033	rs35459363	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,102:0.68:149
chr7	73118398	rs7807316	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	73119316	.	C	T	293.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr7	73122923	rs2228607	A	G	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	73150511	rs1059779	T	C	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.737;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:186,67:0.26:253
chr7	73151195	rs3215356	AG	A	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.042;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr7	73151220	rs2293484	G	C	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:25,96:0.79:121
chr7	73151644	rs6460052	A	G	7176.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	73152578	rs367606949	AC	A	2172.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	73153228	rs3812318	G	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-1.044;SOR=1.749;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr7	73184435	rs7084	G	C	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr7	73243786	rs4717822	T	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:147,72:0.33:219
chr7	73245519	rs8629	T	C	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-1.785;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:202,90:0.31:292
chr7	73249165	rs13246460	T	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:176,95:0.35:271
chr7	73249299	rs13232463	G	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr7	73254464	rs73140869	G	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.546;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=1.382;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:37,34:0.48:71
chr7	73254812	rs13241921	T	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-1.515;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr7	73254910	rs13242043	T	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-1.386;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr7	73255647	rs4717823	G	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:72,40:0.36:112
chr7	73275396	rs4324825	G	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr7	73275501	rs11770024	T	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr7	73275565	rs11770052	T	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.622;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:82,25:0.23:107
chr7	73275769	rs11767129	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr7	73279233	rs10675041	C	CA,CAA	580.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=-0.963;SOR=0.538;set=HC	GT:AD:AF:DP	1/2:8,16,17:0.39,0.41:41
chr7	73279482	rs13227841	T	C	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.201;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:147,57:0.28:204
chr7	73280020	rs1136647	C	T	1875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=3.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.653;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:232,108:0.32:340
chr7	73467650	rs66498390	CTGTG	C	216.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr7	73469169	rs2239691	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	73470714	rs2071307	G	A	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	73470782	rs2856728	C	T	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	73479946	.	G	GA	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=4.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.529;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:70,28:0.29:98
chr7	73530046	rs149618	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:76,32:0.30:108
chr7	73664227	rs3135662	G	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr7	73752699	rs574637	C	T	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:38,90:0.70:128
chr7	73753191	rs61739991	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:262,121:0.32:383
chr7	73753250	rs539518	T	C	6034.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:150,284:0.65:434
chr7	73768065	rs504854	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr7	73803644	rs35415684	T	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr7	73814749	rs2522943	G	C	10779.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr7	73922613	rs2074660	T	C	7538.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:177,323:0.65:500
chr7	73922677	rs10269478	C	G	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:70,136:0.66:206
chr7	73932560	rs17851629	A	G	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:85,138:0.62:223
chr7	73932683	rs61438591	T	C	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:60,136:0.69:196
chr7	73944185	rs2240357	T	C	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:113,177:0.61:290
chr7	73950636	rs2074667	G	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:52,95:0.65:147
chr7	73959331	rs2074665	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr7	73969418	rs56140607	T	C	2475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=0.362;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:56,118:0.68:174
chr7	73969541	rs2301895	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr7	74119475	.	A	AT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.537;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:103,24:0.19:127
chr7	74152376	rs201879322	T	C	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=52.69;MQRankSum=-0.575;QD=4.38;ReadPosRankSum=-1.446;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:207,86:0.29:293
chr7	74167356	rs116428284	A	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.42;QD=25.41;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	74193668	rs17295741	G	A	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	74197598	.	T	A	326.77	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.07;QD=23.34;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	74480550	rs189981194	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=15.25;ReadPosRankSum=-0.533;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	74524986	rs142604065	G	A	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=47.10;MQRankSum=-2.881;QD=12.91;ReadPosRankSum=-0.989;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:31,41:0.57:72
chr7	74608740	.	CT	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.31;MQRankSum=-7.202;QD=1.02;ReadPosRankSum=1.888;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:137,37:0.21:174
chr7	75039300	rs112848269	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr7	75044385	rs236649	C	T	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	75044431	rs236650	C	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr7	75044830	rs236651	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr7	75045496	rs201842651	AG	A	1790.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:124,80:0.39:204
chr7	75045694	rs7050	C	T	7546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.983;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=4.609;MLEAC=1;MLEAF=0.500;MQ=47.48;MQRankSum=-1.679;QD=14.60;ReadPosRankSum=0.693;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:168,349:0.68:517
chr7	75048750	rs6465926	G	A	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr7	75051375	rs398016	T	C	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr7	75072013	rs6966722	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr7	75115226	rs55838432	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=8.085;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-3.780;QD=2.51;ReadPosRankSum=-2.039;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr7	75145266	rs5884966	TA	T	2146.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:55,114:0.67:169
chr7	75176196	rs1167800	G	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr7	75183403	rs1167807	A	G	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr7	75185985	rs794368	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.874;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-0.034;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr7	75187621	rs7806452	A	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,86:0.73:118
chr7	75190477	rs3757604	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr7	75210763	rs237239	TG	CA	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.077;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.69;ReadPosRankSum=-1.740;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr7	75216202	rs1167787	A	G	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr7	75441108	rs11465315	C	T	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-2.334;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:67,31:0.32:98
chr7	75441111	rs11465314	G	T	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-1.634;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:73,31:0.30:104
chr7	75442587	rs3815261	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr7	75442730	rs2302006	T	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr7	75442759	rs2302005	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr7	75442855	rs2302004	A	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr7	75510561	rs7807392	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	75511134	rs10255642	A	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:107,43:0.29:150
chr7	75511667	rs77273947	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr7	75513062	rs42183	A	G	10942.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr7	75513216	rs4728517	T	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.641;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.500;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr7	75544455	rs3823884	A	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-3.199;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr7	75597545	rs10954724	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr7	75601867	rs17148944	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr7	75608674	rs10225188	G	T	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.981;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-0.196;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:81,30:0.27:111
chr7	75608986	rs10239977	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr7	75610763	rs2286819	G	A	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	75612770	rs13223707	C	G	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	75612783	rs13240147	G	A	7343.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	75612803	rs41301394	C	T	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:72,152:0.68:224
chr7	75613998	rs4732514	C	T	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:76,40:0.34:116
chr7	75614029	rs4732515	T	C	5400.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	75614082	rs4732516	C	G	10539.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr7	75614557	rs41301427	G	A	3592.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:88,153:0.63:241
chr7	75614863	rs2302431	TG	CT	7113.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	75614953	rs2228104	T	C	9285.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr7	75615006	rs1057868	C	T	6718.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:132,296:0.69:428
chr7	75615287	rs1057870	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:107,60:0.36:167
chr7	75616577	rs8509	G	A	5784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=7.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=1.007;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:125,229:0.65:354
chr7	75616778	rs11767816	A	T	2632.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.289;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.82;MQRankSum=-0.812;QD=14.39;ReadPosRankSum=2.186;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:112,71:0.39:183
chr7	75616778	.	AC	TA	1920	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=1;MGOF=22;MMLQ=22;MQ=60.81;NF=31;NR=35;PP=1920;QD=29.901028407;SC=TACTCAGAAGACCCAGTCCCT;SbPval=0.41;Source=Platypus;TC=173;TCF=87;TCR=86;TR=66;WE=75616787;WS=75616768;set=Platypus	GT:AD:AF:DP	0/1:107,66:0.38:173
chr7	75616779	rs11766464	C	A	2632.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.728;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=-0.837;QD=14.31;ReadPosRankSum=2.172;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:112,72:0.39:184
chr7	75616817	rs201142190	GGACA	G	7587.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	75618380	.	C	G	113	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=5;HapScore=2;MGOF=81;MMLQ=16;MQ=53.6;NF=5;NR=0;PP=113;QD=29.5542425094;SC=GGCCGGGTTCCGGGGGAAGGC;SbPval=1.0;Source=Platypus;TC=6;TCF=5;TCR=1;TR=5;WE=75618388;WS=75618374;set=Platypus	GT:AD:AF:DP	1/1:1,5:0.83:6
chr7	75621661	rs2286826	G	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	75621827	rs4732519	A	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	75621979	rs6467956	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	75623893	rs114462308	G	A	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:67,116:0.63:183
chr7	75625968	rs76760929	T	G	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr7	75628457	.	A	AAAAT	124	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=8;HapScore=4;MGOF=6;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=124;QD=46.0;SC=CTCCGTCTCAAAAAAAAATAA;SbPval=0.45;Source=Platypus;TC=11;TCF=2;TCR=9;TR=3;WE=75628469;WS=75628447;set=Platypus	GT:AD:AF:DP	0/1:8,3:0.27:11
chr7	75628460	.	A	AT	336.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=0.417;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	75628461	rs4728538	A	T,AAAT	831.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=33.27;SOR=0.770;set=HC	GT:AD:AF:DP	1/2:0,15,10:0.60,0.40:25
chr7	75629778	rs3801472	T	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:105,54:0.34:159
chr7	75630274	rs8565	T	C	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.705;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:153,82:0.35:235
chr7	75633209	rs2058389	T	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.060;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr7	75643313	rs7798794	C	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	75658197	rs13240967	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr7	75659547	rs6957698	C	A	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr7	75659815	rs1044483	T	C	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:183,85:0.32:268
chr7	75677430	rs10231092	C	G	5270.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	75677504	rs6720	C	T	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:55,88:0.62:143
chr7	75684326	rs79663210	G	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:17,49:0.74:66
chr7	75687455	rs142424970	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr7	75692927	rs1637037	C	T	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:45,113:0.72:158
chr7	75693009	rs1637039	C	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr7	75693963	rs2286830	T	C	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=-0.908;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr7	75694079	rs11972240	T	G	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:12,49:0.80:61
chr7	75694345	rs3214335	TC	T	543.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr7	75806299	rs12538908	A	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	75912536	rs3839766	TG	T	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=1.033;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr7	75914934	rs75544239	G	GC	2775.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	76019746	rs55920832	C	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	76023029	rs10261314	T	C	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	76023088	rs140509712	C	CG	7200.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	76023131	rs35508921	A	AG	6815.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr7	76024520	rs2286427	C	T	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	76027235	rs6963070	T	C	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	76027901	rs113567515	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	76027912	rs112701136	A	G	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	76028163	rs75640836	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	76033544	rs11773646	T	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	76033805	rs11773653	A	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	76033906	rs11760779	T	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	76054372	rs2286428	G	A	7963.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	76058767	rs6465128	G	T	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	76062434	.	G	GTTTGGT	3963.73	.	AC=2;AF=1.00;AN=2;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=45.56;SOR=1.429;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	76063333	rs3972768	T	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.56;QD=34.75;SOR=6.804;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	76069486	rs80209248	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.86;MQRankSum=-1.456;QD=5.56;ReadPosRankSum=-1.319;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr7	76069629	rs73363163	G	A	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:141,158:0.53:299
chr7	76069811	rs2906999	T	C	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr7	76071003	rs78087397	C	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	76071412	rs200426507	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	76111994	rs1638075	C	G	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	76112060	rs1638074	C	T	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	76112249	rs147779783	A	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=7.054;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-24.336;QD=0.13;ReadPosRankSum=2.326;SOR=1.454;set=HC	GT:AD:AF:DP	0/1:542,81:0.13:623
chr7	76112487	rs1638073	G	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:3,58:0.95:61
chr7	76126737	rs145964625	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.36;MQRankSum=-2.852;QD=0.84;ReadPosRankSum=-0.428;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:131,23:0.15:154
chr7	76129364	rs78474289	G	C	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.02;QD=23.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	76129539	rs148475911	G	A	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76142536	rs2286988	G	A	3259.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:247,165:0.40:412
chr7	76144229	rs2004545	A	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.208;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=6.140;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.478;QD=4.02;ReadPosRankSum=-2.323;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr7	76144455	rs1799125	A	C	27805.77	.	AC=2;AF=1.00;AN=2;DB;DP=1070;set=Intersection	GT:AD:AF:DP	1/1:1,1064:1.00:1065
chr7	76144483	rs1636632	A	G	5275.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:497,281:0.36:778
chr7	76144560	rs1799126	T	C	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	76239480	rs200882024	C	A	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=45.82;MQRankSum=-5.817;QD=11.22;ReadPosRankSum=0.119;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:72,78:0.52:150
chr7	76239503	rs140446540	G	GC	3078.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.59;MQRankSum=-5.754;QD=15.32;ReadPosRankSum=-1.082;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:87,114:0.57:201
chr7	76239703	rs150952334	T	A	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr7	76240677	rs1799211	T	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr7	76240785	rs71819724	CA	C	4863.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:122,142:0.54:264
chr7	76240888	rs1134609	A	G	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:241,133:0.36:374
chr7	76247668	rs1636619	G	A	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:244,142:0.37:386
chr7	76255032	rs2527936	A	G	6772.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;MQ=59.84;set=Intersection	GT:AD:AF:DP	0/1:198,312:0.61:510
chr7	76255452	rs62476699	G	A	6377.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:195,290:0.60:485
chr7	76255491	rs71535586	C	T	6022.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:174,270:0.61:444
chr7	76255998	rs2006268	T	C	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr7	76607938	rs56083327	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	76608143	rs2245368	C	T	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	76610036	rs199654591	G	A	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.861;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:145,40:0.22:185
chr7	76610095	rs62473742	C	T	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:193,111:0.37:304
chr7	76610299	rs62473743	A	G	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.69;QD=28.57;SOR=2.245;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	76610346	rs71552449	C	T	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=48.80;MQRankSum=-5.396;QD=6.30;ReadPosRankSum=-2.546;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:77,37:0.32:114
chr7	76610407	rs62473744	A	G	3642.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.15;MQRankSum=-1.271;QD=25.84;ReadPosRankSum=-1.107;SOR=0.642;set=HC	GT:AD:AF:DP	1/1:1,140:0.99:141
chr7	76610621	rs6956966	T	C	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.45;QD=27.13;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	76619785	.	G	A	161.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr7	76619795	rs149365700	G	A	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	76624959	rs55895615	C	T	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=47.71;MQRankSum=-3.951;QD=5.41;ReadPosRankSum=-0.166;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:55,30:0.35:85
chr7	76629626	rs145082715	G	A	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-3.910;QD=5.43;ReadPosRankSum=-1.241;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:125,54:0.30:179
chr7	76632736	rs3748126	C	G	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr7	76633640	rs79277119	C	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.98;MQRankSum=-2.931;QD=12.55;ReadPosRankSum=0.048;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:16,29:0.64:45
chr7	76634033	rs1861028	A	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr7	76634077	rs62474183	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr7	76634237	rs377009367	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=45.01;MQRankSum=-2.856;QD=8.22;ReadPosRankSum=-1.924;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr7	76634269	rs77501390	G	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=33.76;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	76634274	rs67390349	CTGCTGT	C	706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.08;MQRankSum=-4.234;QD=15.71;ReadPosRankSum=1.029;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr7	76634953	.	C	G	860.77	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr7	76635003	rs76696965	A	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.01;QD=43.42;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	76635006	rs200111237	C	T	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.60;QD=44.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	76635139	rs62474189	CG	TA	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=41.21;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	76742649	rs142960161	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.01;QD=25.64;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	76751252	rs3864642	C	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	76751543	rs4412304	G	A	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	76751658	rs6962194	C	A	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	76826146	rs374306688	C	T	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:259,116:0.31:375
chr7	76870998	rs17230010	T	C	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:1,366:1.00:367
chr7	76871113	rs17230060	A	G	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	76883685	rs3114318	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	76883989	rs3114319	C	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	76889256	rs200494466	AGTGTGTGTGTGTGTGTGTGTGTGTGT	A	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=40.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	76908199	rs3828947	A	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr7	76958730	rs10274222	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	76984572	rs2037753	G	A	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,112:0.70:161
chr7	76984752	rs35161141	CA	C	839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.099;QD=6.17;ReadPosRankSum=-0.428;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:71,65:0.48:136
chr7	76990372	rs6950070	C	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr7	77006105	rs200280871	AAAAAAAAG	A	523.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.620;MLEAC=1;MLEAF=0.500;MQ=62.20;MQRankSum=2.467;QD=18.06;ReadPosRankSum=1.235;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr7	77006717	rs68033412	C	CA	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-0.391;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr7	77010580	rs76371639	G	GA	1448.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:47,82:0.64:129
chr7	77010682	rs146257641	AAAAC	A	2154.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr7	77033937	rs10238020	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,53:0.74:72
chr7	77035392	rs6949654	T	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	77210729	.	A	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-0.425;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:79,37:0.32:116
chr7	77240069	rs2302473	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.422;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr7	77247821	rs9640663	G	A	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.503;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:208,101:0.33:309
chr7	77256713	rs3750050	A	G	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:384,197:0.34:581
chr7	77261820	rs12666778	T	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr7	77539744	rs711309	G	A	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	77552127	rs848486	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	77567008	.	A	AT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=2.669;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.521;QD=1.93;ReadPosRankSum=-1.503;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr7	77649085	rs117054456	C	T	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=-0.454;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:39,92:0.70:131
chr7	77708105	.	A	ATGTGTGTGTG	491.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=44.70;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	77708131	rs73136595	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;MQ=61.07;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	77756580	rs2074641	T	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	77756724	rs7812015	C	T	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	77756815	rs9656109	G	T	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	77756849	rs2074642	C	T	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	77764591	rs767682	C	A	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	77789403	rs1009524	A	G	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	78118982	rs1548868	G	A	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	78119109	rs3735442	C	T	11145.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr7	78119221	rs3086374	G	GA	2282.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:5,106:0.95:111
chr7	78130801	rs10641091	C	CT	550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=8.697;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.297;QD=6.26;ReadPosRankSum=1.464;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr7	78256342	rs38116	C	T	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	78256643	rs38117	G	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	79833152	.	AGTAGCTTT	A	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.721;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:55,10:0.15:65
chr7	80141069	rs10230573	A	G	4712.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	80290369	rs3211892	A	G	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	80299113	rs3173803	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr7	80374342	rs1949971	A	G	5873.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	80374438	rs1949972	T	C	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	80378148	rs1405743	T	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	80378175	rs2886793	T	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	80378319	rs2272351	G	C	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	80456841	rs4461841	C	T	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	80804928	rs1509912	G	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr7	80805175	rs1509911	T	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:80,44:0.35:124
chr7	80805263	rs11972689	C	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:138,73:0.35:211
chr7	80805381	rs11976314	A	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:93,40:0.30:133
chr7	80817269	rs327695	T	C	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	81339304	rs2074725	A	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	81346685	rs1800793	T	C	8904.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:2,347:0.99:349
chr7	81350208	rs12536657	A	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	81350223	rs10272030	G	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	81355066	rs2887069	G	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	81355449	rs2286194	T	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr7	81359116	rs5745686	CA	C	2953.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=23.08;SOR=1.743;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	81366210	.	G	GGTGTGTGTGTGT	749.73	.	AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;QD=44.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	81372156	rs5745676	A	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	81372452	rs2214826	A	G	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	81374500	rs4732406	G	C	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	81381326	rs5745646	C	T	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	81381613	rs202123787	G	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.284;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:82,26:0.24:108
chr7	81588636	rs1229502	G	A	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:186,90:0.33:276
chr7	81591114	rs72063149	GTAATGATTATAACAGTATATACAATTTCT	G	757.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	81591716	rs1229503	T	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.656;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr7	81593454	rs3735517	G	A	2579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.236;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:68,119:0.64:187
chr7	81596813	rs17240387	T	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr7	81600197	rs37067	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.760;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	81603871	rs141806359	G	GAA	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=13.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=1.283;SOR=4.103;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	81603945	.	AT	A	47	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=13;HapScore=2;MGOF=38;MMLQ=28;MQ=60.0;NF=0;NR=5;PP=47;QD=10.6;SC=TGAAAACACTATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=5;WE=81603953;WS=81603935;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	81626356	rs6944326	G	A	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	81634822	rs71885491	GA	G	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.515;QD=2.24;ReadPosRankSum=0.181;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr7	81642634	rs37135	A	C	121.85	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	81642949	rs37136	C	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	81693768	rs73703113	T	C	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr7	81964578	rs5885290	G	GA	1495.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;MQ=60.34;set=Intersection	GT:AD:AF:DP	1/1:7,75:0.91:82
chr7	82072932	rs79572976	G	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	82435033	rs12668093	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.593;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:93,35:0.27:128
chr7	82453708	rs2522833	A	C	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	82455895	rs2715150	A	G	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	82475786	rs67293081	TTA	T	887.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	82478415	rs2522840	T	G	92.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	82497343	rs4628206	T	A	6758.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	82531887	rs150270529	TATA	T	532.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr7	82546282	rs12707531	C	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr7	82581488	rs10630259	T	TTCA	9862.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr7	82581859	rs976714	C	T	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:58,138:0.70:196
chr7	82582846	rs10954696	C	T	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:59,123:0.68:182
chr7	82583609	rs10487648	A	C	4869.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:73,202:0.73:275
chr7	82763534	rs149498958	A	AATATAT	214.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	82764425	rs2877	C	G	4463.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:100,192:0.66:292
chr7	82785271	rs112144434	G	A	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:44,158:0.78:202
chr7	82785719	rs59705796	TA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=6.800;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=2.201;QD=1.62;ReadPosRankSum=0.873;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr7	82996831	rs75164403	A	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr7	83021799	rs201556609	TAAA	T	2314.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	83023587	.	TAC	T	11140.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.121;QD=35.03;ReadPosRankSum=-1.349;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:1,317:1.00:318
chr7	83026100	rs150931802	C	CAA	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	83029280	rs2255906	T	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	83029438	rs2722974	C	T	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:100,52:0.34:152
chr7	83029639	rs2255820	A	C,T	1942.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/2:0.65,0.33:84
chr7	83031907	rs2709930	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	83032187	rs2722976	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	83034754	rs2245441	T	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	83034899	rs2709935	T	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	83035177	rs3735512	G	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	83036367	rs2245312	C	G	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	83036602	rs2709941	T	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	83037751	rs2722985	C	A	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	83047583	rs2723033	T	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	83047583	.	TCA	CCC	992	.	AC=2;AF=1.00;AN=2;BRF=0.1;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=24;MQ=60.0;NF=18;NR=4;PP=992;QD=47.5212670392;SC=GCTTCGAGCATCAGAAAATAG;SbPval=0.54;Source=Platypus;TC=23;TCF=19;TCR=4;TR=22;WE=83047593;WS=83047573;set=Platypus	GT:AD:AF:DP	1/1:1,22:0.96:23
chr7	83047585	rs2713146	A	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	83047666	rs2713145	C	T	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	83095955	rs7806439	A	G	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:55,85:0.61:140
chr7	83095968	rs2713180	C	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr7	83098428	rs3842170	A	AT	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr7	83098696	rs12534772	T	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr7	83098714	.	CTTT	CTTTTTTT,C	364.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=21;set=Intersection	GT:AF:DP	0/1:0.25:16
chr7	83098749	rs13225391	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	83277699	.	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.677;QD=1.32;ReadPosRankSum=1.246;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr7	83590852	rs797821	T	C	9946.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr7	83606353	rs35361892	T	TGA	1864.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	83606518	rs701320	G	A	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	83606595	.	A	AAT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=15.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.230;SOR=0.003;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr7	83610497	rs7789094	C	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr7	83614801	rs141423527	AG	A	1966.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,66:0.62:107
chr7	83739762	rs1990044	T	C	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:68,126:0.65:194
chr7	83740015	rs1990045	T	C	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:30,58:0.66:88
chr7	83764309	rs17241389	C	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:45,80:0.64:125
chr7	84628989	rs7800072	T	G	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:261,159:0.38:420
chr7	84644346	rs6468008	C	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:52,16:0.24:68
chr7	84644500	rs17559084	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:163,78:0.32:241
chr7	84644666	rs17639600	G	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	84647477	rs7780132	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	84671609	.	GA	G	1109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.698;QD=5.44;ReadPosRankSum=-0.107;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:125,79:0.39:204
chr7	84684961	rs199946932	CATATATATATATATAT	C,CATATATATATAT	344.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=6.368;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.52;ReadPosRankSum=1.610;SOR=2.617;set=HC	GT:AD:AF:DP	1/2:1,6,6:0.46,0.46:13
chr7	86274196	rs274623	T	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr7	86536849	.	CAA	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=0.063;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	86542455	rs35895874	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:88,46:0.34:134
chr7	86544248	rs1029367	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr7	86571235	rs2373361	C	A	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.310;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:40,35:0.47:75
chr7	86577346	rs1557665	A	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,27:0.36:76
chr7	86594379	rs6976741	G	A	1470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.240;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:88,44:0.33:132
chr7	86594383	rs6958716	T	C	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.141;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:80,40:0.33:120
chr7	86594423	rs6976877	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr7	86781423	rs2286267	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr7	86795947	rs3058402	TAG	T	1920.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:117,55:0.32:172
chr7	86800351	rs3747807	A	G	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=4.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.555;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:249,90:0.27:339
chr7	86814122	.	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.933;QD=0.66;ReadPosRankSum=-2.159;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:126,26:0.17:152
chr7	86820459	rs1558050	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr7	86978347	rs802037	C	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.315;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.033;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:48,23:0.32:71
chr7	86983715	rs7808249	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:73,40:0.35:113
chr7	86998842	rs6966140	G	A	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	86998936	rs35374737	AT	A	1034.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	87005287	rs59190666	C	CT	784.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=16.70;ReadPosRankSum=0.574;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:4,43:0.91:47
chr7	87006567	rs802042	G	C	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	87011349	rs31630	G	A	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	87022024	rs31644	G	C	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	87032613	rs31653	A	G	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	87053150	rs31667	A	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	87053206	rs31668	G	A	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	87056260	rs111542896	A	AGTGT	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=31.04;ReadPosRankSum=0.645;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr7	87069758	rs31675	T	C	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	87082292	rs1202283	G	A	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	87082496	rs199500302	TTTTTC	T	903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.769;QD=15.06;ReadPosRankSum=1.241;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:21,39:0.65:60
chr7	87160618	rs2032582	A	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=0.415;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:69,34:0.33:103
chr7	87168749	rs4728699	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	87173667	rs1922242	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.385;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr7	87174066	rs2235046	T	C	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:124,68:0.35:192
chr7	87178626	rs2235013	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr7	87179086	rs2235035	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:131,53:0.29:184
chr7	87179143	rs2235033	A	G	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:239,111:0.32:350
chr7	87179601	rs1128503	A	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:106,59:0.36:165
chr7	87180198	rs10276036	C	T	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:112,63:0.36:175
chr7	87192731	rs11975994	G	A	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.024;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr7	87193597	rs4148734	G	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:162,110:0.40:272
chr7	87215114	rs1211152	A	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	87229501	rs2214102	T	C	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	87485539	.	C	CA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.931;QD=0.87;ReadPosRankSum=0.152;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr7	87563975	rs57360340	AT	A	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.367;QD=2.69;ReadPosRankSum=0.122;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:35,24:0.41:59
chr7	87594188	rs1637500	T	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.580;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr7	87704799	rs3085476	G	GAGAA	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr7	87745903	rs2301998	A	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr7	87759588	rs200875448	A	AT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-3.566;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr7	87840263	rs6964163	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.803;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr7	87913361	rs1981529	C	T	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:39,69:0.64:108
chr7	88389420	rs1858848	A	G	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:261,145:0.36:406
chr7	88423414	rs3843538	C	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr7	88424115	rs2373396	C	G	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:128,62:0.33:190
chr7	88424291	rs4363132	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:77,43:0.36:120
chr7	88424365	rs35996371	CAA	C	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.332;QD=8.26;ReadPosRankSum=-1.599;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr7	88847450	rs199973381	TA	T	351.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chr7	88847451	rs4140973	A	T	1045.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=0.525;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:17,47:0.73:64
chr7	88847453	rs4140974	G	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-0.380;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr7	89792250	rs39286	A	C	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	89797144	rs259136	G	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	89854446	rs194520	T	G	7740.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	89856608	rs110360	C	T	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	89856643	rs138124501	A	G	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:87,158:0.64:245
chr7	89856644	rs2016903	C	T	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:154,89:0.37:243
chr7	89861832	rs194524	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	89861890	rs194525	G	T	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	89861942	rs194526	C	T	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	89861957	rs17621350	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr7	89867446	rs35403811	T	TCTG	9179.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr7	89887587	rs11771963	G	T	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	89901039	rs10280053	A	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr7	89912301	rs1029365	G	A	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	89927191	rs6465256	T	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	89929110	rs36006782	C	CT	79.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=15.97;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	89933957	rs71961054	GTAGATAGA	G	233.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr7	89937027	rs35441907	CA	C	695.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:4,40:0.91:44
chr7	89938588	rs7803620	C	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=3.651;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	89938680	rs1134956	C	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=1.223;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	89938715	rs192819527	G	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr7	89939340	rs146337411	TG	T	1345.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr7	89969831	rs42637	A	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	89969878	rs2285399	A	G	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	89971556	rs1557650	A	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	89983808	rs42663	T	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	89984409	rs42664	A	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	90014111	rs9886362	G	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	90225928	rs7782773	T	C	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	90233618	rs6465273	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr7	90356175	rs10240049	T	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:74,50:0.40:124
chr7	90742137	rs376151415	GGT	G	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=2.962;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr7	90747315	rs803167	A	T	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:3,47:0.94:50
chr7	90894356	.	AGCT	A	43	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=24;MQ=58.68;NF=1;NR=1;PP=43;QD=30.0;SC=TTGGCGCGCCAGCTGCTGCTG;SbPval=0.58;Source=Platypus;TC=14;TCF=5;TCR=9;TR=2;WE=90894366;WS=90894346;set=Platypus	GT:AD:AF:DP	0/1:12,2:0.14:14
chr7	90894987	.	G	C	1400.77	.	AC=1;AF=0.500;AN=2;DP=195;set=Intersection	GT:AD:AF:DP	0/1:120,74:0.38:194
chr7	91503228	rs10266424	C	T	4819.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:95,208:0.69:303
chr7	91570290	rs4727267	G	C	5605.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:163,246:0.60:409
chr7	91599825	rs2188155	A	C	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:109,46:0.30:155
chr7	91630620	rs6964587	G	T	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.861;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:221,79:0.26:300
chr7	91632306	rs1989779	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.334;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:96,27:0.22:123
chr7	91641928	rs13245393	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.052;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr7	91652178	rs10644111	A	AAAC	1059.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,30:0.36:84
chr7	91659150	rs17164315	C	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-1.604;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:60,31:0.34:91
chr7	91667692	rs2285333	T	G	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr7	91671853	rs926192	C	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	91674302	rs9785013	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr7	91687351	rs1544377	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	91690457	rs56072181	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr7	91691601	rs10236397	C	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr7	91700120	rs34613656	C	CA	155.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-0.416;QD=9.17;ReadPosRankSum=1.189;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr7	91707197	rs733957	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr7	91708898	rs35759833	A	G	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:62,128:0.67:190
chr7	91711791	rs2079082	A	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr7	91712698	rs6960867	A	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:177,91:0.34:268
chr7	91713016	rs34688691	TA	T	344.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.355;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.226;QD=10.45;ReadPosRankSum=-0.492;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr7	91713018	rs114399745	A	T	132.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.184;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.495;QD=3.49;ReadPosRankSum=0.911;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr7	91713972	rs10228334	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:54,20:0.27:74
chr7	91714911	rs1063242	C	T	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	91715662	rs28927678	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:121,62:0.34:183
chr7	91726927	rs1063243	A	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr7	91727385	rs6946356	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:149,68:0.31:217
chr7	91730115	rs117615503	G	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr7	91736794	rs7785971	T	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:66,23:0.26:89
chr7	91743150	rs7797834	A	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.916;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr7	91752690	rs2269727	C	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:219,128:0.37:347
chr7	91758422	rs4729021	C	A	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.996;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:82,29:0.26:111
chr7	91761050	rs71292987	G	GT	76.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	91761305	rs66673218	CA	C	433.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	91779242	rs1978061	G	A	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:186,84:0.31:270
chr7	91779971	rs6465353	T	G	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:112,55:0.33:167
chr7	91863700	rs2027950	G	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr7	92016022	rs62467849	T	C	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:55,92:0.63:147
chr7	92027187	rs38793	A	G	3498.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:77,150:0.66:227
chr7	92028039	rs38794	C	A	3978.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:79,172:0.69:251
chr7	92129161	.	CAA	C,CA	4486.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=262;set=Intersection	GT:AF:DP	1/2:0.24,0.75:228
chr7	92130846	rs143283146	A	G	4322.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:117,205:0.64:322
chr7	92131289	rs10278857	G	T	8294.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr7	92135802	rs6465359	T	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	92147584	rs38809	C	T	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	92244422	rs42039	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-0.384;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr7	92244630	rs3731387	TATACA	T	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr7	92247333	rs42043	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,23:0.28:82
chr7	92252203	rs42046	C	G	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.099;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr7	92730678	rs144380633	A	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:165,75:0.31:240
chr7	92734451	rs6965201	A	G	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr7	92760502	rs4268	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr7	92818503	rs17781170	A	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr7	92837791	rs73218062	C	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr7	92855628	rs200511300	T	TA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.420;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:106,23:0.18:129
chr7	92886812	rs722263	A	G	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-1.015;SOR=0.262;set=HC	GT:AD:AF:DP	0/1:12,43:0.78:55
chr7	92900512	rs59890424	GT	G	712.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.746;QD=12.50;ReadPosRankSum=-0.137;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:11,46:0.81:57
chr7	92963242	rs4729079	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	92970847	rs2106432	C	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:54,72:0.57:126
chr7	93055753	rs1801197	A	G	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:76,138:0.64:214
chr7	93063398	rs2072083	G	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	93063701	rs200558502	G	GAA	81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.57;ReadPosRankSum=0.366;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr7	93067334	rs10713823	TA	T	2577.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	93070870	rs5885829	GA	G	1704.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:5,86:0.95:91
chr7	93073147	rs2074123	C	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	93116074	rs147774910	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr7	93346095	rs2027984	C	A	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	93515993	rs4517	T	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.80;ReadPosRankSum=-2.429;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	93516460	rs73227485	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr7	93540348	rs2798	T	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	93551428	rs4262	C	T	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	93555311	rs180233	A	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr7	94033800	rs406226	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr7	94034848	rs810687	A	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr7	94038934	rs42518	C	T	6678.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	94039032	rs42519	C	T	6093.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr7	94039187	rs2521206	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr7	94039900	rs42520	C	T	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	94040133	rs389328	T	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	94040287	rs34026686	G	A	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:46,117:0.72:163
chr7	94040345	rs35587403	GT	G	826.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-1.202;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:39,71:0.65:110
chr7	94043239	rs42524	C	G	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	94043274	rs421587	A	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:137,90:0.40:227
chr7	94043493	rs2301643	G	A	5914.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:134,268:0.67:402
chr7	94045576	rs42526	G	A	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	94047206	.	G	T	680.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr7	94047903	rs3216182	AT	A	371.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr7	94055885	rs62464631	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:145,66:0.31:211
chr7	94055933	rs13240759	T	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:32,77:0.71:109
chr7	94056006	rs400218	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	94056216	rs7805430	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr7	94056244	rs413826	C	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	94056251	rs199900944	GAA	G	1409.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.10;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	94056349	rs1800248	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,23:0.37:63
chr7	94058395	.	T	C	232	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=28;MQ=59.84;NF=14;NR=0;PP=232;QD=19.0550866105;SC=GATCTGAGTCTACTCTTCCTG;SbPval=1.0;Source=Platypus;TC=44;TCF=40;TCR=4;TR=14;WE=94058403;WS=94058385;set=Platypus	GT:AD:AF:DP	1/0:30,14:0.32:44
chr7	94146975	rs2301646	T	G	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.101;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr7	94157585	rs57770781	CT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.218;SOR=1.807;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr7	94174854	rs3793326	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr7	94175073	rs3793325	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.043;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr7	94176627	rs6958243	G	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	94178749	rs10272136	T	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	94178761	rs7801436	C	T	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	94182373	rs6465417	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr7	94183993	rs10280843	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr7	94184691	rs10238176	T	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr7	94227275	.	C	T	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.174;QD=11.30;ReadPosRankSum=-2.395;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr7	94227276	rs10247562	T	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=35.91;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	94227509	rs10232398	G	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	94247971	rs6465421	C	A	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	94257449	rs138881114	T	TAC	913.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr7	94879225	rs12690919	A	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr7	94897801	rs854522	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr7	94898811	rs854524	G	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:52,97:0.65:149
chr7	94931408	.	C	CAAAAA	43	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=0.9998;HP=21;HapScore=2;MGOF=17;MMLQ=24;MQ=45.26;NF=1;NR=0;PP=43;QD=46.0;SC=TACTCTGTCACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=9;TCF=6;TCR=3;TR=1;WE=94931416;WS=94931398;set=Platypus	GT:AD:AF:DP	1/1:8,1:0.11:9
chr7	94937446	rs662	T	C	12982.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr7	94941038	rs1157745	G	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	94946255	rs3917498	G	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	94947799	rs2074351	G	A	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	94953913	rs705380	G	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr7	94989255	.	CT	C	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.051;QD=3.57;ReadPosRankSum=0.558;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:74,51:0.41:125
chr7	94992244	rs10953143	T	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	94996913	rs3757708	T	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	95001555	rs1053275	C	T	7314.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr7	95019355	rs6977389	G	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	95024046	rs11970910	A	G	10433.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr7	95025600	rs13226149	G	A	12346.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr7	95034775	rs7493	G	C	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	95035582	rs3735586	A	T	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	95039445	rs2286232	C	T	1947.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.39;ReadPosRankSum=-0.648;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:1,86:0.99:87
chr7	95041016	rs12026	G	C	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	95041542	rs2068604	G	T	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	95125050	.	C	CT	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.116;QD=6.74;ReadPosRankSum=0.243;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chr7	95216247	rs10247649	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr7	95216262	rs4729201	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr7	95216394	rs4727323	T	G	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:193,111:0.37:304
chr7	95217194	rs374593390	GT	G	2161.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:10,112:0.92:122
chr7	95221269	rs2301630	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr7	95442405	rs11452827	C	CT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.484;QD=2.64;ReadPosRankSum=-0.377;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	95442690	rs35397709	T	TAA	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.514;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:60,34:0.36:94
chr7	95447785	rs10590197	ATT	A	399.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.162;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr7	95447788	.	T	A	75.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.760;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr7	95616309	rs17705339	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr7	95709602	rs42083	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	95709666	rs42082	C	A	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	95727014	rs7794344	T	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	95775848	.	T	TA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.889;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:79,22:0.22:101
chr7	95818475	rs6957286	G	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	95818864	rs11335226	CA	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.059;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr7	95822256	.	C	A	223.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr7	95864108	rs6957975	T	C	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	95926165	rs77834136	G	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-0.439;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:15,25:0.62:40
chr7	95926337	rs150996519	T	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr7	96116952	.	C	T	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=3.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.377;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:178,74:0.29:252
chr7	96635155	.	CTTT	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.41;ReadPosRankSum=0.778;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr7	96635420	.	A	AGCC	3000.73	.	AC=1;AF=0.500;AN=2;DP=364;set=Intersection	GT:AD:AF:DP	0/1:103,129:0.56:232
chr7	96635448	.	G	GCCC	1752	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=3;HapScore=1;MGOF=20;MMLQ=24;NF=42;NR=55;SC=CGCCGCCGCCGCAGCCGCACT;SbPval=0.66;Source=Platypus;TC=250;TCF=114;TCR=136;TR=97;WE=96635456;WS=96635438;set=Platypus	GT:AD:AF:DP	0/1:153,97:0.39:250
chr7	96649884	rs3214218	A	AG	99.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr7	97361784	rs2072100	C	T	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	97363472	rs67877395	C	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-2.204;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:206,73:0.26:279
chr7	97369114	.	C	T	533.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr7	97369341	rs62499562	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr7	97483921	rs1049677	G	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr7	97488569	rs1049674	A	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr7	97488790	rs41278833	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr7	97498535	rs6465630	A	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:69,42:0.38:111
chr7	97617658	rs13242307	C	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:91,54:0.37:145
chr7	97617697	rs12704956	A	G	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:150,84:0.36:234
chr7	97619528	rs33957709	AT	A	579.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.651;QD=13.80;ReadPosRankSum=0.824;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:5,37:0.88:42
chr7	97784061	rs17435590	T	C	1705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.123;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:174,99:0.36:273
chr7	97816327	rs6465657	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:168,76:0.31:244
chr7	97820868	rs11451148	C	CA	612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.730;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.345;QD=3.46;ReadPosRankSum=-0.693;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:114,63:0.36:177
chr7	97822115	rs11765552	T	A	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:276,145:0.34:421
chr7	97822210	rs3801294	G	A	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:310,157:0.34:467
chr7	97846856	rs11471393	CGAG	C	1973.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr7	97851109	rs4729416	T	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	97852899	rs2270595	A	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	97862097	rs139511001	GA	G	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.267;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:72,25:0.26:97
chr7	97874143	rs3816944	C	A	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	97911618	rs111849767	G	A	7202.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	97920270	rs7778015	T	C	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=1.586;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	97921834	rs6465664	A	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	97922773	rs12873	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	97922851	rs12728	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	97922875	rs13008	G	A	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	97933601	rs1045916	C	T	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr7	97935671	rs13232181	C	G	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	97937201	rs11540936	G	A	4925.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:96,208:0.68:304
chr7	97937258	rs6465666	T	C	10978.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr7	97939975	.	G	GT	252	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=13;HapScore=2;MGOF=21;MMLQ=22;MQ=60.35;NF=1;NR=8;PP=252;QD=28.6666666667;SC=TCCCAAGGCTGTTTTTTTTTT;SbPval=0.55;Source=Platypus;TC=23;TCF=2;TCR=21;TR=9;WE=97939983;WS=97939965;set=Platypus	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	97939998	rs139666268	C	CTATTTATT	479.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	97944744	rs2107716	G	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.92;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	97944931	.	A	AAAT,AAATAAT	958	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=12;HapScore=2;MGOF=12;MMLQ=28;MQ=61.11;NF=7,7;NR=33,33;PP=737,958;QD=18.55;SC=CATACTAAAAAAAAAAAAATA;SbPval=0.41;Source=Platypus;TC=53;TCF=8;TCR=45;TR=40,40;WE=97944945;WS=97944921;set=Platypus	GT:AF:DP	0/1:0.75:53
chr7	97944933	rs11385557	A	AT	2872.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.23;MQRankSum=0.395;QD=41.04;ReadPosRankSum=0.723;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:2,68:0.97:70
chr7	97944935	rs11385558	A	AT	2872.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.14;MQRankSum=0.395;QD=41.04;ReadPosRankSum=1.005;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:2,68:0.97:70
chr7	97944937	rs10647784	A	AT,ATAAT	3702.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.71;QD=56.97;SOR=1.437;set=HC	GT:AD:AF:DP	1/2:0,26,39:0.40,0.60:65
chr7	97944986	rs6963210	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	97991792	rs3801257	A	G	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	98460824	rs10238224	C	A	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:142,228:0.62:370
chr7	98461062	rs1548622	G	A	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,68:0.63:108
chr7	98495299	rs35409546	G	GTT	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=0.735;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	98495304	rs56294747	G	T	829.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.40;ReadPosRankSum=0.260;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr7	98500956	rs7777927	C	T	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:35,132:0.79:167
chr7	98503707	rs3214239	TG	T	1519.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,47:0.75:63
chr7	98504025	rs139837317	TTTTATTTATTTA	T,TTTTATTTATTTATTTA	852.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=52;set=Intersection	GT:AF:DP	1/2:0.59,0.41:22
chr7	98509699	.	A	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=3.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.006;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:214,44:0.17:258
chr7	98513300	rs1859662	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr7	98522627	.	C	CA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=2.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=1.271;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr7	98527728	.	A	G	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.931;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.571;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:155,54:0.26:209
chr7	98546350	rs375897932	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,35:0.36:97
chr7	98550654	rs66469618	TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	T	2941.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.534;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.458;QD=34.61;ReadPosRankSum=1.079;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:13,72:0.85:85
chr7	98553739	rs3214240	T	TC	511.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr7	98555483	rs143549431	G	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr7	98556962	rs41633	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:153,68:0.31:221
chr7	98558880	rs160384	G	C	3720.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:88,166:0.65:254
chr7	98568017	rs41644	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr7	98574830	rs219842	C	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr7	98581195	rs6968258	G	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr7	98582812	rs11769445	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	98587990	rs7808857	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr7	98588402	rs55731811	A	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr7	98601632	rs55848275	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	98602990	rs219838	G	C	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:240,112:0.32:352
chr7	98606106	rs56290902	C	T	11343.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	0/1:300,522:0.64:822
chr7	98637850	rs998849	A	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=9.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.06;ReadPosRankSum=0.349;SOR=2.534;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr7	98637855	rs998848	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.65;ReadPosRankSum=-0.494;SOR=2.550;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	98637857	rs35083915	CT	C	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	98637916	rs3033104	ACG	A	193.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	98648517	rs57957340	TG	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.361;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr7	98650051	rs219797	G	C	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=1.322;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:124,80:0.39:204
chr7	98655228	.	G	GT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.167;QD=5.06;ReadPosRankSum=0.099;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	98658130	rs11311529	CT	C	1766.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.761;QD=14.72;ReadPosRankSum=-0.058;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:13,107:0.89:120
chr7	98659720	.	C	CT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.25;ReadPosRankSum=-1.062;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	98659812	rs67817120	GGT	G	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	98659813	.	GTGA	G	566	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=7;NR=5;PP=566;QD=51.4608062168;SC=GAACTCCTGGGTGATTCAAGC;SbPval=0.59;Source=Platypus;TC=12;TCF=7;TCR=5;TR=12;WE=98659825;WS=98659803;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	98659816	rs11295323	AT	A	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	98659817	.	T	A	321	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=1;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=17;NR=5;PP=321;QD=16.1714187521;SC=TCCTGGGTGATTCAAGCAATC;SbPval=0.65;Source=Platypus;TC=24;TCF=18;TCR=6;TR=22;WE=98659825;WS=98659803;set=Platypus	GT:AD:AF:DP	1/1:2,22:0.92:24
chr7	98775453	rs17161599	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr7	98775511	rs62473048	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr7	98779740	rs6465740	G	T	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	98782750	rs10953283	C	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:191,94:0.33:285
chr7	98790607	.	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.503;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=8.095;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.783;QD=0.66;ReadPosRankSum=-1.758;SOR=1.829;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr7	98987445	.	G	A	248.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	99039279	.	A	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=1.844;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:96,14:0.13:110
chr7	99048510	.	A	G	459.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr7	99074000	rs141232056	C	T	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:45,98:0.69:143
chr7	99293475	rs2740565	T	A	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	99293859	rs11401860	C	CT,CTT	1551.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;MQRankSum=0.482;QD=20.15;ReadPosRankSum=-0.556;SOR=0.982;set=HC	GT:AD:AF:DP	1/2:5,25,47:0.32,0.61:77
chr7	99297601	rs2037500	A	C	5575.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr7	99297804	rs2177180	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	99302994	rs10211	C	T	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	99303094	rs12360	G	A	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	99306566	rs2687077	C	T	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	99306685	rs2257401	C	G	10382.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr7	99314986	rs2687075	A	G	9689.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr7	99365943	rs2687116	C	A	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	99370493	rs2738258	T	C	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	99436198	rs800672	G	A	528.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.89;ReadPosRankSum=-0.105;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,24:0.86:28
chr7	99473624	rs1025576	T	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr7	99474427	rs2572023	A	G	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:74,149:0.67:223
chr7	99474729	rs2572022	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr7	99499872	rs2527913	A	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr7	99500899	rs2247762	T	C	5171.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:100,235:0.70:335
chr7	99500911	rs2247761	A	G	4937.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:100,224:0.69:324
chr7	99501078	.	C	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=3.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.809;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:109,18:0.14:127
chr7	99501313	rs2572003	A	T	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:85,166:0.66:251
chr7	99507352	rs58242927	GT	G	1415.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.660;QD=22.47;ReadPosRankSum=0.783;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:7,56:0.89:63
chr7	99507354	rs77711029	T	G	87.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.763;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.708;QD=1.66;ReadPosRankSum=3.382;SOR=1.503;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr7	99514417	rs2571997	A	C	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:47,103:0.69:150
chr7	99521208	rs118082856	G	A	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr7	99569394	rs17295356	G	A	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	99578370	rs62484968	T	G	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-7.254;QD=5.75;ReadPosRankSum=-0.662;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr7	99578381	rs62484969	T	C	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-8.727;QD=5.68;ReadPosRankSum=-0.889;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:109,31:0.22:140
chr7	99578411	rs62484970	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:136,54:0.28:190
chr7	99578535	rs137865884	G	A	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-7.311;QD=3.81;ReadPosRankSum=-1.399;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:163,55:0.25:218
chr7	99578575	.	C	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-9.169;QD=3.05;ReadPosRankSum=-1.802;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:99,17:0.15:116
chr7	99578579	.	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-9.725;QD=3.13;ReadPosRankSum=-1.536;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:98,15:0.13:113
chr7	99578589	rs148264780	A	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=9.933;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-9.593;QD=1.90;ReadPosRankSum=-1.403;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:91,12:0.12:103
chr7	99580907	rs2301806	C	G	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	99589843	rs66748925	A	G	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	99621579	rs34766893	T	A	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:96,152:0.61:248
chr7	99654600	rs11558475	A	G	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr7	99654689	rs11558476	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-2.707;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr7	99673359	rs56054049	A	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.898;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:70,25:0.26:95
chr7	99674870	rs34312198	C	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,53:0.74:72
chr7	99686873	rs4729575	G	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:138,106:0.43:244
chr7	99691740	rs1527423	G	A	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:194,99:0.34:293
chr7	99692993	rs2261360	G	T	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.608;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.471;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr7	99693078	rs12267	G	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:87,39:0.31:126
chr7	99693337	rs7799115	T	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	99696370	rs1534309	C	G	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	99697041	rs72518456	C	CA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=10.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.465;QD=2.09;ReadPosRankSum=0.641;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr7	99699436	rs1122598	G	A	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=28.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-0.018;SOR=0.079;set=HC	GT:AD:AF:DP	0/1:78,61:0.44:139
chr7	99699626	rs2293481	T	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:96,58:0.38:154
chr7	99701176	rs999885	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:80,49:0.38:129
chr7	99701640	rs4729577	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:108,45:0.29:153
chr7	99702947	rs41280968	G	A	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr7	99704827	rs1050542	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr7	99706303	rs4134923	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr7	99707712	rs2272338	A	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:200,103:0.34:303
chr7	99707950	rs4134917	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:88,59:0.40:147
chr7	99710584	rs4134904	A	AG	737.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:92,32:0.26:124
chr7	99711461	rs34119670	AC	A	2448.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:114,116:0.50:230
chr7	99720640	rs1569055	C	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	99747130	rs12878	G	A	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:241,100:0.29:341
chr7	99747378	rs7785392	G	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr7	99751017	rs3736591	A	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.302;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:89,37:0.29:126
chr7	99751281	rs3736590	G	T	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:144,92:0.39:236
chr7	99752566	rs55839153	G	A	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.584;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:163,51:0.24:214
chr7	99753121	rs2272337	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:125,57:0.31:182
chr7	99757612	rs3823646	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,41:0.36:115
chr7	99758136	rs3800951	T	G	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:319,176:0.36:495
chr7	99764572	rs78756658	T	C	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr7	99768957	rs75779608	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr7	99771305	rs71126309	C	CTCTT	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.680;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=3.125;QD=10.12;ReadPosRankSum=-0.746;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr7	99772298	rs10252037	A	C	8775.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,330:1.00:331
chr7	99778227	rs11531577	G	T	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:185,83:0.31:268
chr7	99778285	rs2272343	A	C	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.142;QD=5.22;ReadPosRankSum=0.786;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:138,60:0.30:198
chr7	99780283	rs2056726	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:138,68:0.33:206
chr7	99796146	rs3735241	A	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.749;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr7	99802812	rs2246713	G	C	4863.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:104,206:0.66:310
chr7	99810643	rs1618851	T	G	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	99811204	rs1623264	G	C	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	99811313	rs1624099	G	A	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:100,154:0.61:254
chr7	99811464	rs1727130	C	G	9654.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr7	99816179	rs1727142	T	C	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	99816256	rs1727143	C	A	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:66,73:0.53:139
chr7	99816272	rs1636986	A	G	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.02;QD=43.32;SOR=1.354;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	99816272	.	ACCGCATCCTTATA	GCCCCATCCTTATA,GCCCCATCCTTATT	757	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.29;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=18;MMLQ=24;MQ=44.57;NF=37,12;NR=64,29;PP=757,693;QD=8.02443440458;SC=TAGGTAAGTCACCGCATCCTT;SbPval=0.57;Source=Platypus;TC=107;TCF=40;TCR=67;TR=101,41;WE=99816293;WS=99816262;set=Platypus	GT:AF:DP	0/1:0.94:107
chr7	99816275	rs1636987	G	C	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.53;QD=45.60;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	99816285	rs79649688	A	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=14.017;MLEAC=1;MLEAF=0.500;MQ=50.59;MQRankSum=-5.534;QD=7.74;ReadPosRankSum=-0.219;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr7	99817585	rs7786505	G	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.543;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-0.787;QD=2.90;ReadPosRankSum=-0.247;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr7	99817859	rs2906645	A	G	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	99818137	rs2906646	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr7	99818927	rs705867	C	T	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:81,124:0.60:205
chr7	99819004	rs141918023	CTCTG	C	2913.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	99821381	rs858508	C	G	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	99821470	rs858509	A	G	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	99821685	rs863450	C	T	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	99821894	rs858510	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	99917416	rs112622797	G	A	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.446;QD=5.86;ReadPosRankSum=0.275;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:74,49:0.40:123
chr7	99950297	rs7795656	A	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;MQ=59.67;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr7	99950408	rs7795805	A	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.07;MQRankSum=-1.728;QD=8.71;ReadPosRankSum=0.248;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr7	99950415	.	TCA	T	576.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-1.522;QD=9.78;ReadPosRankSum=0.339;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr7	99950418	.	T	TGC	576.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=53.55;MQRankSum=-1.691;QD=9.61;ReadPosRankSum=0.377;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr7	99950427	rs7799894	G	T	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=52.62;MQRankSum=-1.810;QD=10.32;ReadPosRankSum=-0.307;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr7	99950450	rs7799901	G	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=50.88;MQRankSum=-1.969;QD=5.44;ReadPosRankSum=1.253;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:48,22:0.31:70
chr7	99950508	rs7799932	G	C	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.500;MQ=51.10;MQRankSum=-2.077;QD=5.04;ReadPosRankSum=-0.831;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr7	99954393	rs6946768	G	A	1425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=2.265;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:210,92:0.30:302
chr7	99954457	rs41280971	G	T	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.830;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:132,57:0.30:189
chr7	99955866	rs61735533	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr7	99956436	rs11771799	T	C	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.053;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-12.887;QD=3.14;ReadPosRankSum=-2.420;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:174,29:0.14:203
chr7	99956439	rs35986051	T	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.163;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-12.862;QD=3.54;ReadPosRankSum=-1.683;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:170,28:0.14:198
chr7	99956444	rs11761306	A	G	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=6.737;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-13.366;QD=3.58;ReadPosRankSum=-0.749;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:162,27:0.14:189
chr7	99957128	rs5886120	GCCT	G	1549.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr7	99964789	rs11765869	T	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr7	99971313	rs2405442	T	C	16264.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=27.43;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,593:1.00:593
chr7	99971834	rs1859788	A	G	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	99972122	rs7792525	A	G	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:480,211:0.31:691
chr7	99987805	rs7783550	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	99998607	rs11769886	G	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr7	100000274	rs35111986	C	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr7	100002772	rs76913697	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr7	100004446	rs1476679	C	T	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	100013457	rs5015756	T	C	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	100016844	rs11763414	C	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:109,45:0.29:154
chr7	100017454	rs7783159	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:136,54:0.28:190
chr7	100028187	rs6975729	C	T	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:319,143:0.31:462
chr7	100028484	rs6962151	T	C	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:260,112:0.30:372
chr7	100031093	rs200682032	C	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:66,37:0.36:103
chr7	100054637	rs150726853	GT	G	2260.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:142,74:0.34:216
chr7	100064719	rs7806537	A	G	2771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=2.397;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:279,152:0.35:431
chr7	100065443	rs7811142	A	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:82,28:0.25:110
chr7	100072031	rs7809801	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr7	100074813	.	GA	G	84.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.915;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=4.677;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-2.297;SOR=1.680;set=HC	GT:AD:AF:DP	0/1:67,8:0.11:75
chr7	100074815	rs376555320	GGAGA	G	81.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.600;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-1.821;SOR=2.105;set=HC	GT:AD:AF:DP	0/1:72,8:0.10:80
chr7	100083078	rs67040465	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr7	100088640	rs2897358	C	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:245,114:0.32:359
chr7	100091215	rs73405353	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr7	100147928	.	C	CA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.944;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	100160109	rs11760595	T	C	3968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.695;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-0.687;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:80,169:0.68:249
chr7	100175473	rs909152	T	C	12772.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr7	100179857	rs11761260	G	A	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:59,109:0.65:168
chr7	100201230	rs112882557	AC	A	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=8.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.831;SOR=0.040;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr7	100218631	rs41295942	C	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr7	100227188	rs7457868	A	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	100238452	.	C	T	2829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.570;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:423,176:0.29:599
chr7	100240771	rs1052897	A	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.477;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	100280896	rs221793	A	C	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	100281768	rs221794	T	C	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr7	100283261	rs221795	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	100284510	rs35436931	TG	T	8177.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr7	100284913	rs221796	C	G	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr7	100285974	rs221797	A	C	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	100319680	.	CT	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=4.524;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.356;QD=2.14;ReadPosRankSum=-0.491;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:72,31:0.30:103
chr7	100333173	.	G	GA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.849;QD=1.12;ReadPosRankSum=1.654;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr7	100357911	.	G	A	2020.77	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:42,90:0.68:132
chr7	100370800	rs489951	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr7	100371100	rs2734880	C	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,49:0.33:149
chr7	100371114	rs314298	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,41:0.33:125
chr7	100371473	rs314299	C	T	4451.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.674;QD=10.73;ReadPosRankSum=1.302;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:284,131:0.32:415
chr7	100371474	rs78193191	G	A	10953.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.697;QD=26.85;ReadPosRankSum=-0.736;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:132,276:0.68:408
chr7	100371476	rs148800656	T	TG	10944.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.692;QD=28.06;ReadPosRankSum=-1.109;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:125,265:0.68:390
chr7	100371479	rs71555302	G	C	4298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.683;QD=11.34;ReadPosRankSum=1.404;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:257,122:0.32:379
chr7	100373077	rs542137	C	G	8845.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:184,390:0.68:574
chr7	100373271	rs540330	G	T	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:84,151:0.64:235
chr7	100373367	rs539445	G	C	3782.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:94,173:0.65:267
chr7	100374087	rs314300	A	G	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:266,132:0.33:398
chr7	100374265	rs149853621	TCCCTC	T	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-2.311;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr7	100376978	rs314303	T	C	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	100377082	rs531503	T	C	6759.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:126,308:0.71:434
chr7	100377373	rs482308	G	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,58:0.72:81
chr7	100383605	rs160602	T	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,29:0.28:102
chr7	100385561	rs72364644	GGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	G	1592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.876;QD=6.84;ReadPosRankSum=2.170;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:181,52:0.22:233
chr7	100386900	rs191137	T	C	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	100388501	rs5886138	TA	T	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-1.260;SOR=0.262;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr7	100391581	rs314339	T	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:190,106:0.36:296
chr7	100391644	rs314340	T	C	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	100393141	rs314343	C	G	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	100395003	rs314344	G	C	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.607;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:67,31:0.32:98
chr7	100401270	rs314348	T	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	100410597	rs2230585	G	A	11307.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:218,490:0.69:708
chr7	100410657	rs314358	A	G	3197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.641;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:460,189:0.29:649
chr7	100411278	rs314359	T	C	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.128;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:155,79:0.34:234
chr7	100414704	rs35304729	C	CA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.468;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	100416250	rs144173	A	G	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:305,138:0.31:443
chr7	100416332	rs314364	T	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=1.794;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:122,29:0.19:151
chr7	100416354	rs314365	G	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.453;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr7	100424586	rs35907339	CG	C	358.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:88,31:0.26:119
chr7	100453208	rs314370	T	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:123,62:0.34:185
chr7	100454704	.	G	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=1.349;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:214,32:0.13:246
chr7	100456595	rs314373	G	A	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:126,87:0.41:213
chr7	100456611	rs314374	G	C	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:131,82:0.38:213
chr7	100458795	rs314378	T	C	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:303,174:0.36:477
chr7	100465355	rs12705089	C	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:95,52:0.35:147
chr7	100465439	rs149676605	T	C	7609.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:199,355:0.64:554
chr7	100467975	rs10627414	C	CCT	3429.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	100468284	rs1054391	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:200,107:0.35:307
chr7	100468398	rs7783543	T	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,41:0.42:98
chr7	100481658	rs11310439	GT	G	1354.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:179,73:0.29:252
chr7	100482026	rs15624	T	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:119,49:0.29:168
chr7	100482526	rs6942607	C	G	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.048;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:156,61:0.28:217
chr7	100482720	rs3757868	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr7	100484381	rs12705095	T	G	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=2.910;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:150,50:0.25:200
chr7	100484917	rs6954151	C	T	5079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=886;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.043;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:593,288:0.33:881
chr7	100486035	rs2720392	C	A	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:65,137:0.68:202
chr7	100486088	rs3087504	C	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:164,76:0.32:240
chr7	100486656	rs13241786	T	G	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=2.478;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:281,92:0.25:373
chr7	100486754	rs12666989	G	C	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.681;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:189,57:0.23:246
chr7	100488658	rs1799806	G	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr7	100494222	rs66793456	G	GC	7708.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	100547148	.	GCAA	G	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.25;ReadPosRankSum=-1.207;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	100547155	rs74789991	C	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.65;ReadPosRankSum=-1.367;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	100547173	rs75482949	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.12;ReadPosRankSum=-0.168;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr7	100547175	rs78695034	A	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.41;ReadPosRankSum=-0.000;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	100547182	rs76728014	C	T	289.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.534;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.70;ReadPosRankSum=-0.437;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr7	100547183	.	GC	G	277.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.044;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.84;ReadPosRankSum=-0.375;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr7	100547185	.	C	T	286.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.700;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.06;ReadPosRankSum=0.277;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr7	100547189	.	GGGCCAC	G	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.28;ReadPosRankSum=0.667;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	100547211	rs79277565	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=2.107;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr7	100547215	rs77163569	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.852;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=2.144;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	100547220	rs77805555	A	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=2.054;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr7	100547225	rs77066311	T	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=1.461;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	100547227	rs76736259	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=1.263;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	100547238	rs79636720	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr7	100547525	rs142704104	ACC	A	312.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	100549414	rs75254397	C	A	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.830;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=21.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-1.988;SOR=3.287;set=HC	GT:AD:AF:DP	0/1:147,42:0.22:189
chr7	100549415	rs75547895	A	T	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=21.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-1.602;SOR=3.304;set=HC	GT:AD:AF:DP	0/1:151,42:0.22:193
chr7	100549421	rs75196671	G	C	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=23.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.337;SOR=3.342;set=HC	GT:AD:AF:DP	0/1:172,43:0.20:215
chr7	100549422	rs78470577	A	T	1346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.866;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=25.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.663;SOR=3.472;set=HC	GT:AD:AF:DP	0/1:174,45:0.21:219
chr7	100549426	rs78724937	A	G	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.227;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=23.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-1.106;SOR=2.909;set=HC	GT:AD:AF:DP	0/1:182,49:0.21:231
chr7	100549505	rs74588241	T	C	5716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.040;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=10.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.741;QD=8.42;ReadPosRankSum=-1.554;SOR=1.539;set=HC	GT:AD:AF:DP	0/1:511,168:0.25:679
chr7	100549512	rs77667788	A	T	6210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=9.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.708;QD=8.69;ReadPosRankSum=-1.692;SOR=1.351;set=HC	GT:AD:AF:DP	0/1:533,182:0.25:715
chr7	100549516	rs76951301	C	A	6483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=7.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.694;QD=8.75;ReadPosRankSum=-1.281;SOR=1.319;set=HC	GT:AD:AF:DP	0/1:550,191:0.26:741
chr7	100549527	rs77426926	A	G	7565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.057;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=11.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.636;QD=9.38;ReadPosRankSum=-1.830;SOR=1.500;set=HC	GT:AD:AF:DP	0/1:588,219:0.27:807
chr7	100549530	rs77626205	A	G	8047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=842;ExcessHet=3.0103;FS=11.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.617;QD=9.62;ReadPosRankSum=-1.685;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:606,231:0.28:837
chr7	100549537	rs75781078	G	A	8785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=894;ExcessHet=3.0103;FS=12.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-1.040;SOR=1.591;set=HC	GT:AD:AF:DP	0/1:640,250:0.28:890
chr7	100549540	.	A	C	9324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.596;ClippingRankSum=0.000;DP=919;ExcessHet=3.0103;FS=12.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.800;SOR=1.556;set=HC	GT:AD:AF:DP	0/1:656,259:0.28:915
chr7	100549543	rs79492129	G	A	9630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.775;ClippingRankSum=0.000;DB;DP=939;ExcessHet=3.0103;FS=11.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-1.379;SOR=1.530;set=HC	GT:AD:AF:DP	0/1:661,273:0.29:934
chr7	100549547	rs77743944	TG	CC	11406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.573;ClippingRankSum=0.000;DB;DP=966;ExcessHet=3.0103;FS=12.609;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.938;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:676,285:0.30:961
chr7	100549573	rs73163748	G	T	13895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.166;ClippingRankSum=0.000;DB;DP=1088;ExcessHet=3.0103;FS=5.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.366;QD=12.84;ReadPosRankSum=-0.400;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:705,377:0.35:1082
chr7	100549583	rs73163749	G	A	14887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.271;ClippingRankSum=0.000;DB;DP=1138;ExcessHet=3.0103;FS=3.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=1.456;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:733,399:0.35:1132
chr7	100549592	rs73163750	TT	AA	15612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=1169;ExcessHet=3.0103;FS=2.583;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=2.135;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:745,419:0.36:1164
chr7	100549650	rs73398716	A	G	11230.77	.	AC=1;AF=0.500;AN=2;DB;DP=1387;set=Intersection	GT:AD:AF:DP	0/1:810,568:0.41:1378
chr7	100549697	rs77036391	A	G	28500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.791;ClippingRankSum=0.000;DB;DP=1671;ExcessHet=3.0103;FS=4.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=-1.373;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:907,752:0.45:1659
chr7	100549703	rs78164286	C	T	28613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=1707;ExcessHet=3.0103;FS=4.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=1.179;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:934,760:0.45:1694
chr7	100549787	rs73714227	CA	TG	37545.77	.	AC=1;AF=0.500;AN=2;DB;DP=1795;JOINED;set=Intersection	GT:AD:AF:DP	0/1:826,959:0.54:1785
chr7	100549865	rs35420758	C	T	18975.77	.	AC=1;AF=0.500;AN=2;DB;DP=1616;set=Intersection	GT:AD:AF:DP	0/1:886,721:0.45:1607
chr7	100549873	rs74193966	G	A	34148.77	.	AC=1;AF=0.500;AN=2;DB;DP=1578;set=Intersection	GT:AD:AF:DP	0/1:685,884:0.56:1569
chr7	100549884	rs73163752	C	T	34521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.182;ClippingRankSum=0.000;DB;DP=1571;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.09;ReadPosRankSum=0.159;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:697,866:0.55:1563
chr7	100549894	rs78007565	T	C	34041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=1544;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.595;QD=22.16;ReadPosRankSum=1.025;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:704,832:0.54:1536
chr7	100549896	rs79035545	G	C	33321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.324;ClippingRankSum=0.000;DB;DP=1538;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.580;QD=21.78;ReadPosRankSum=0.189;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:694,836:0.55:1530
chr7	100549902	rs75991009	C	T	33807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.285;ClippingRankSum=0.000;DB;DP=1538;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.592;QD=22.10;ReadPosRankSum=0.041;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:700,830:0.54:1530
chr7	100549914	rs73714228	G	A	32565.77	.	AC=1;AF=0.500;AN=2;DB;DP=1507;set=Intersection	GT:AD:AF:DP	0/1:692,807:0.54:1499
chr7	100549935	rs73714229	T	G	30931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.745;ClippingRankSum=0.000;DB;DP=1498;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.666;QD=20.76;ReadPosRankSum=0.892;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:715,775:0.52:1490
chr7	100549942	rs73714230	T	C	30818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DB;DP=1479;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.650;QD=20.95;ReadPosRankSum=-0.061;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:699,772:0.52:1471
chr7	100549967	rs73714231	C	T	18748.77	.	AC=1;AF=0.500;AN=2;DB;DP=1430;set=Intersection	GT:AD:AF:DP	0/1:726,697:0.49:1423
chr7	100549979	rs73398717	C	T	26338.77	.	AC=1;AF=0.500;AN=2;DB;DP=1359;set=Intersection	GT:AD:AF:DP	0/1:670,684:0.51:1354
chr7	100550032	rs111723000	C	CCCT	11528.73	.	AC=1;AF=0.500;AN=2;DB;DP=1179;set=Intersection	GT:AD:AF:DP	0/1:586,508:0.46:1094
chr7	100550079	rs28379747	A	C	11864.77	.	AC=1;AF=0.500;AN=2;DB;DP=1155;set=Intersection	GT:AD:AF:DP	0/1:600,551:0.48:1151
chr7	100550133	rs74197937	A	G	18445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=4.048;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=2.252;QD=16.63;ReadPosRankSum=-0.223;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:619,490:0.44:1109
chr7	100550138	rs73714233	C	T	18188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=1109;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=2.267;QD=16.58;ReadPosRankSum=0.260;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:616,481:0.44:1097
chr7	100550184	rs73714234	C	A	16874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.503;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=4.979;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=15.65;ReadPosRankSum=1.105;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:619,459:0.43:1078
chr7	100550191	rs35523587	C	T	14093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;ClippingRankSum=0.000;DB;DP=1078;ExcessHet=3.0103;FS=5.038;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-0.935;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:443,611:0.58:1054
chr7	100550203	rs75141335	T	A	15993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.347;ClippingRankSum=0.000;DB;DP=1044;ExcessHet=3.0103;FS=7.101;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-0.141;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:604,416:0.41:1020
chr7	100550203	.	TCA	ACC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=1;MGOF=87;MMLQ=22;MQ=59.11;NF=160;NR=215;PP=2944;QD=20;SC=CATCACTTCTTCAATCACTTC;SbPval=0.15;Source=Platypus;TC=1199;TCF=624;TCR=575;TR=375;WE=100550213;WS=100550174;set=Platypus	GT:AD:AF:DP	1/0:824,375:0.31:1199
chr7	100550205	rs77471356	A	C	15693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=1045;ExcessHet=3.0103;FS=6.115;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-0.079;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:609,412:0.40:1021
chr7	100550245	rs66732041	G	A	10112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=1011;ExcessHet=3.0103;FS=10.395;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.569;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:686,302:0.31:988
chr7	100550252	rs67587735	A	G	9812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=1002;ExcessHet=3.0103;FS=9.413;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=10.00;ReadPosRankSum=0.718;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:700,281:0.29:981
chr7	100550271	rs71540914	A	G	8874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.144;ClippingRankSum=0.000;DB;DP=990;ExcessHet=3.0103;FS=4.782;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.659;QD=9.11;ReadPosRankSum=-2.117;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:715,259:0.27:974
chr7	100550282	rs71540915	C	T	6852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.951;ClippingRankSum=0.000;DB;DP=955;ExcessHet=3.0103;FS=6.375;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.844;QD=7.30;ReadPosRankSum=-1.264;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:726,213:0.23:939
chr7	100550285	rs78054189	C	T	6656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=6.424;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.870;QD=7.07;ReadPosRankSum=-1.256;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:733,209:0.22:942
chr7	100550286	rs370230558	T	G	6593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.260;ClippingRankSum=0.000;DB;DP=957;ExcessHet=3.0103;FS=6.428;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.885;QD=7.01;ReadPosRankSum=-1.125;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:734,206:0.22:940
chr7	100550289	rs71540916	G	T	6331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=962;ExcessHet=3.0103;FS=5.280;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.901;QD=6.71;ReadPosRankSum=-1.115;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:739,204:0.22:943
chr7	100550291	rs71540917	C	A	6235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.016;ClippingRankSum=0.000;DB;DP=955;ExcessHet=3.0103;FS=5.268;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.912;QD=6.68;ReadPosRankSum=-1.334;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:733,200:0.21:933
chr7	100550304	rs71540918	C	T	11674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.043;ClippingRankSum=0.000;DB;DP=1128;ExcessHet=3.0103;FS=2.731;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-4.647;QD=10.50;ReadPosRankSum=-2.635;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:796,316:0.28:1112
chr7	100550315	rs76964559	T	C	13742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.449;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-8.548;QD=12.81;ReadPosRankSum=-4.241;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:711,362:0.34:1073
chr7	100550316	rs78759433	G	A	5341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DB;DP=1082;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=1.056;QD=5.00;ReadPosRankSum=-1.868;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:878,191:0.18:1069
chr7	100550325	rs75788887	A	G	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.124;ClippingRankSum=0.000;DB;DP=1057;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-11.050;QD=0.91;ReadPosRankSum=-1.673;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:959,87:0.08:1046
chr7	100550327	rs373932626	CA	TG	9127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.392;ClippingRankSum=0.000;DB;DP=1045;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.597;QD=9.64;ReadPosRankSum=-0.910;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:699,248:0.26:947
chr7	100550330	rs71540919	T	C	5991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.232;ClippingRankSum=0.000;DB;DP=1037;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-6.549;QD=5.84;ReadPosRankSum=1.252;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:824,202:0.20:1026
chr7	100550338	rs75318416	G	C	12416.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.726;ClippingRankSum=0.000;DB;DP=1014;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-7.924;QD=12.37;ReadPosRankSum=-0.621;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:673,331:0.33:1004
chr7	100550339	rs80152825	G	A	12452.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.959;ClippingRankSum=0.000;DB;DP=1018;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-7.841;QD=12.35;ReadPosRankSum=-0.946;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:671,337:0.33:1008
chr7	100550340	.	T	A	263.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.574;ClippingRankSum=0.000;DP=1021;ExcessHet=3.0103;FS=5.486;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-5.516;QD=0.26;ReadPosRankSum=0.300;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:936,75:0.07:1011
chr7	100550342	rs74184351	T	C	12647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.222;ClippingRankSum=0.000;DB;DP=1028;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-7.710;QD=12.42;ReadPosRankSum=-0.266;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:678,340:0.33:1018
chr7	100550343	rs74356244	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.168;ClippingRankSum=0.000;DB;DP=1042;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-11.699;QD=0.13;ReadPosRankSum=-1.644;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:959,73:0.07:1032
chr7	100550347	rs74218792	A	G	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.055;ClippingRankSum=0.000;DB;DP=1041;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.130;QD=1.44;ReadPosRankSum=3.986;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:929,101:0.10:1030
chr7	100550354	rs74220905	C	A	4504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.570;ClippingRankSum=0.000;DB;DP=1019;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-8.026;QD=4.57;ReadPosRankSum=0.633;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:820,165:0.17:985
chr7	100550355	rs77135444	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.415;ClippingRankSum=0.000;DB;DP=1022;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-14.643;QD=0.14;ReadPosRankSum=-1.605;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:886,67:0.07:953
chr7	100550358	rs74184446	C	T	9254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.726;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-6.527;QD=9.79;ReadPosRankSum=1.803;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:684,261:0.28:945
chr7	100550364	rs74188306	C	T	5560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DB;DP=1050;ExcessHet=3.0103;FS=4.589;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.727;QD=5.35;ReadPosRankSum=2.317;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:861,178:0.17:1039
chr7	100550376	.	C	T	3003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.753;ClippingRankSum=0.000;DP=1067;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.054;QD=3.19;ReadPosRankSum=4.035;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:813,128:0.14:941
chr7	100550384	rs77636516	C	T	3104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.036;QD=2.89;ReadPosRankSum=4.332;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:933,142:0.13:1075
chr7	100550385	.	C	A	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DP=1084;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-6.190;QD=2.29;ReadPosRankSum=-0.931;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:951,123:0.11:1074
chr7	100550396	rs74213821	G	C	12956.77	.	AC=1;AF=0.500;AN=2;DB;DP=1054;set=Intersection	GT:AD:AF:DP	0/1:632,395:0.38:1027
chr7	100550397	.	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DP=1049;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.843;QD=0.29;ReadPosRankSum=-1.874;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:960,79:0.08:1039
chr7	100550399	.	G	C	2711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DP=1048;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-5.308;QD=2.61;ReadPosRankSum=-0.372;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:911,128:0.12:1039
chr7	100550400	.	G	A	3934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DP=1047;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.081;QD=3.79;ReadPosRankSum=2.427;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:869,168:0.16:1037
chr7	100550403	.	T	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DP=1059;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.774;QD=0.38;ReadPosRankSum=-0.729;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:965,85:0.08:1050
chr7	100550421	.	C	A	3101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DP=1085;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.192;QD=2.89;ReadPosRankSum=1.575;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:934,141:0.13:1075
chr7	100550427	.	CC	TT	3239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0.000;DP=1081;ExcessHet=3.0103;FS=0.783;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.029;QD=3.02;ReadPosRankSum=2.122;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:930,142:0.13:1072
chr7	100550432	rs111924697	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=1069;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.508;QD=0.20;ReadPosRankSum=-2.551;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:976,83:0.08:1059
chr7	100550442	.	C	T	4398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150;ClippingRankSum=0.000;DP=1017;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.442;QD=4.36;ReadPosRankSum=1.147;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:845,163:0.16:1008
chr7	100550447	.	C	T	6882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DP=991;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.842;QD=7.01;ReadPosRankSum=0.597;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:762,220:0.22:982
chr7	100550452	.	A	T	6952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DP=949;ExcessHet=3.0103;FS=4.002;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.552;QD=7.38;ReadPosRankSum=0.912;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:726,216:0.23:942
chr7	100550463	.	T	G	16852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DP=842;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.954;QD=20.18;ReadPosRankSum=0.599;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:434,401:0.48:835
chr7	100550466	rs75319202	C	T	8726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=819;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.983;QD=10.75;ReadPosRankSum=-0.755;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:566,246:0.30:812
chr7	100550467	rs78312717	A	G	14219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-3.148;QD=17.77;ReadPosRankSum=0.141;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:441,359:0.45:800
chr7	100550471	.	T	C	2657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DP=779;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.848;QD=3.44;ReadPosRankSum=1.129;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:660,113:0.15:773
chr7	100550473	rs77401364	G	A	13970.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=767;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.977;QD=19.16;ReadPosRankSum=0.180;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:381,348:0.48:729
chr7	100550478	rs79412130	C	T	9682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.845;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=4.300;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.567;QD=13.12;ReadPosRankSum=-0.663;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:473,265:0.36:738
chr7	100550484	.	A	C	3980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.742;ClippingRankSum=0.000;DP=761;ExcessHet=3.0103;FS=15.774;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-9.883;QD=5.36;ReadPosRankSum=1.519;SOR=1.652;set=HC	GT:AD:AF:DP	0/1:606,137:0.18:743
chr7	100550486	.	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DP=747;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-4.953;QD=0.43;ReadPosRankSum=2.389;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:673,56:0.08:729
chr7	100550488	.	A	G	1736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.768;ClippingRankSum=0.000;DP=729;ExcessHet=3.0103;FS=25.045;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-8.760;QD=2.44;ReadPosRankSum=-0.071;SOR=2.970;set=HC	GT:AD:AF:DP	0/1:628,83:0.12:711
chr7	100550490	.	G	A	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.638;ClippingRankSum=0.000;DP=726;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=2.596;QD=3.73;ReadPosRankSum=1.923;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:591,119:0.17:710
chr7	100550500	.	T	C	2391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.761;ClippingRankSum=0.000;DP=665;ExcessHet=3.0103;FS=18.356;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-9.474;QD=3.66;ReadPosRankSum=0.320;SOR=2.296;set=HC	GT:AD:AF:DP	0/1:555,98:0.15:653
chr7	100550501	.	T	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DP=661;ExcessHet=3.0103;FS=2.254;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=0.747;QD=0.30;ReadPosRankSum=-0.247;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:597,52:0.08:649
chr7	100550507	rs139308151	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=4.082;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=1.922;QD=0.14;ReadPosRankSum=-0.838;SOR=1.513;set=HC	GT:AD:AF:DP	0/1:577,43:0.07:620
chr7	100550508	.	A	T	10041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.018;ClippingRankSum=0.000;DP=619;ExcessHet=3.0103;FS=13.441;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-7.195;QD=19.27;ReadPosRankSum=1.062;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:269,252:0.48:521
chr7	100550510	.	A	T	5966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;ClippingRankSum=0.000;DP=612;ExcessHet=3.0103;FS=18.042;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-10.127;QD=12.56;ReadPosRankSum=1.750;SOR=1.698;set=HC	GT:AD:AF:DP	0/1:313,162:0.34:475
chr7	100550511	rs74435283	G	C	2335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=3.119;QD=4.18;ReadPosRankSum=0.966;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:473,86:0.15:559
chr7	100550514	rs78262970	T	C	5662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.634;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=14.212;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-11.817;QD=9.71;ReadPosRankSum=1.828;SOR=1.626;set=HC	GT:AD:AF:DP	0/1:419,164:0.28:583
chr7	100550515	.	T	A	3667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.750;ClippingRankSum=0.000;DP=588;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=3.272;QD=6.32;ReadPosRankSum=0.173;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:463,117:0.20:580
chr7	100550520	rs77013428	C	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.434;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-5.925;QD=2.11;ReadPosRankSum=-2.142;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:489,61:0.11:550
chr7	100550522	rs76664943	C	G	5512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=12.770;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-12.092;QD=10.12;ReadPosRankSum=4.303;SOR=1.571;set=HC	GT:AD:AF:DP	0/1:389,156:0.29:545
chr7	100550543	rs76777205	C	T	1565.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.194;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-4.842;QD=3.21;ReadPosRankSum=-1.065;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:425,63:0.13:488
chr7	100550544	rs75037819	A	C	5837.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.353;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=17.211;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-10.188;QD=11.96;ReadPosRankSum=5.256;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:328,160:0.33:488
chr7	100550552	rs77957081	A	T	5795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=19.118;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-9.869;QD=12.36;ReadPosRankSum=4.528;SOR=1.799;set=HC	GT:AD:AF:DP	0/1:311,158:0.34:469
chr7	100550562	rs78069287	G	A	5846.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.091;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=21.357;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-8.637;QD=13.29;ReadPosRankSum=1.148;SOR=1.896;set=HC	GT:AD:AF:DP	0/1:283,157:0.36:440
chr7	100550563	rs77561545	A	G	1976.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.422;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=13.442;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-3.475;QD=4.52;ReadPosRankSum=-5.170;SOR=1.847;set=HC	GT:AD:AF:DP	0/1:364,73:0.17:437
chr7	100550564	rs75269566	C	T	5810.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.159;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=25.099;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-8.436;QD=13.58;ReadPosRankSum=-0.435;SOR=2.009;set=HC	GT:AD:AF:DP	0/1:271,157:0.37:428
chr7	100550568	rs78115301	T	A	2079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.219;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=12.915;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-3.172;QD=4.86;ReadPosRankSum=-7.193;SOR=1.883;set=HC	GT:AD:AF:DP	0/1:352,76:0.18:428
chr7	100550570	rs76035900	T	C	9279.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.157;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=21.372;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-7.177;QD=21.83;ReadPosRankSum=-2.965;SOR=1.798;set=HC	GT:AD:AF:DP	0/1:194,231:0.54:425
chr7	100550571	rs146166922	G	C	6124.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=20.800;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-7.241;QD=17.35;ReadPosRankSum=0.594;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:198,155:0.44:353
chr7	100550577	.	C	T	2211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.219;ClippingRankSum=0.000;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=0.790;QD=5.23;ReadPosRankSum=0.100;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:345,78:0.18:423
chr7	100550583	rs71888665	AACCACC	A	2328.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.537;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=0.635;QD=5.68;ReadPosRankSum=-2.048;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:331,79:0.19:410
chr7	100550586	.	C	CAAG	1848.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.168;ClippingRankSum=0.000;DP=396;ExcessHet=3.0103;FS=18.251;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-9.052;QD=4.67;ReadPosRankSum=0.603;SOR=1.617;set=HC	GT:AD:AF:DP	0/1:327,69:0.17:396
chr7	100550593	rs369199410	ACTG	A	1203.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.538;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-8.612;QD=2.91;ReadPosRankSum=-3.193;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:358,56:0.14:414
chr7	100550595	rs80315860	T	C	228.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.938;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=15.757;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-4.178;QD=0.57;ReadPosRankSum=-4.965;SOR=2.681;set=HC	GT:AD:AF:DP	0/1:371,31:0.08:402
chr7	100550596	rs74991890	G	A	240.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=18.004;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-3.989;QD=0.59;ReadPosRankSum=-5.442;SOR=2.848;set=HC	GT:AD:AF:DP	0/1:374,33:0.08:407
chr7	100550600	.	T	C	966.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.354;ClippingRankSum=0.000;DP=421;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-8.299;QD=2.30;ReadPosRankSum=0.756;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:370,51:0.12:421
chr7	100550600	.	TCT	CCA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=1;MGOF=221;MMLQ=28;MQ=46.48;NF=40;NR=122;PP=2944;QD=20;SC=ACCACTGAGATCTCCTCCCAC;SbPval=0.79;Source=Platypus;TC=305;TCF=90;TCR=215;TR=162;WE=100550610;WS=100550590;set=Platypus	GT:AD:AF:DP	1/0:143,162:0.53:305
chr7	100550601	rs79112841	C	A	2509.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.481;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=0.501;QD=5.88;ReadPosRankSum=2.556;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:342,85:0.20:427
chr7	100550602	rs80036331	T	A	6733.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=13.931;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-7.382;QD=15.66;ReadPosRankSum=-1.494;SOR=1.495;set=HC	GT:AD:AF:DP	0/1:253,177:0.41:430
chr7	100550604	rs74878158	C	A	2498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.633;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=0.857;QD=5.72;ReadPosRankSum=2.729;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:351,86:0.20:437
chr7	100551180	rs10248095	C	T	27732.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=1090;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;MQRankSum=15.937;QD=27.16;ReadPosRankSum=-0.814;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:2,1019:1.00:1021
chr7	100551318	.	G	A	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DP=978;ExcessHet=3.0103;FS=4.915;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-9.555;QD=1.42;ReadPosRankSum=-1.438;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:727,80:0.10:807
chr7	100551322	rs76260977	C	T	4220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.531;ClippingRankSum=0.000;DB;DP=969;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-13.420;QD=5.27;ReadPosRankSum=-4.191;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:656,145:0.18:801
chr7	100551326	.	C	CA	3722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.068;ClippingRankSum=0.000;DP=936;ExcessHet=3.0103;FS=5.957;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-13.806;QD=4.80;ReadPosRankSum=-6.755;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:644,131:0.17:775
chr7	100551329	.	C	CA	3307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.841;ClippingRankSum=0.000;DP=934;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-13.705;QD=4.27;ReadPosRankSum=-8.444;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:651,123:0.16:774
chr7	100551331	.	GTA	G	3021.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.224;ClippingRankSum=0.000;DP=924;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-13.999;QD=3.92;ReadPosRankSum=-9.460;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:655,115:0.15:770
chr7	100551370	rs78124935	AG	TC	4091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=857;ExcessHet=3.0103;FS=0.699;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-6.753;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:642,139:0.18:781
chr7	100551376	rs75808610	C	A	4684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;ClippingRankSum=0.000;DB;DP=872;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-4.553;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:658,154:0.19:812
chr7	100551390	rs77795035	T	A	6568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0.000;DB;DP=892;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-2.037;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:661,201:0.23:862
chr7	100551392	rs75008337	CG	TA	6898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.041;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=2.122;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-1.436;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:662,206:0.24:868
chr7	100551397	rs79748732	G	T	7220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=2.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.280;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:659,220:0.25:879
chr7	100551400	rs75496565	G	A	7311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.059;ClippingRankSum=0.000;DB;DP=891;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.758;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:658,224:0.25:882
chr7	100551433	rs73398732	T	C	6858.77	.	AC=1;AF=0.500;AN=2;DB;DP=992;set=Intersection	GT:AD:AF:DP	0/1:629,355:0.36:984
chr7	100551461	rs78826835	C	G	16349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=1081;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=1.095;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:633,441:0.41:1074
chr7	100551471	rs78831742	T	C	16989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.747;ClippingRankSum=0.000;DB;DP=1095;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=2.874;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:647,441:0.41:1088
chr7	100551473	rs79233494	G	C	17181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=1100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=2.741;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:647,446:0.41:1093
chr7	100551476	rs74460367	C	T	17004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.489;ClippingRankSum=0.000;DB;DP=1119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=2.560;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:655,457:0.41:1112
chr7	100551565	rs73163757	AT	GC	15866.77	.	AC=1;AF=0.500;AN=2;DB;DP=1037;JOINED;set=Intersection	GT:AD:AF:DP	0/1:607,426:0.41:1033
chr7	100551578	rs78584246	T	G	8853.77	.	AC=1;AF=0.500;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	0/1:592,412:0.41:1004
chr7	100551626	rs73714238	T	C	13043.77	.	AC=1;AF=0.500;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	0/1:552,367:0.40:919
chr7	100551637	rs112753297	C	CCAA	13657.73	.	AC=1;AF=0.500;AN=2;DB;DP=907;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:543,362:0.40:905
chr7	100551646	rs77153975	A	G	12862.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	0/1:537,338:0.39:875
chr7	100551662	rs78684063	C	T	11887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.131;ClippingRankSum=0.000;DB;DP=849;ExcessHet=3.0103;FS=3.321;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.831;QD=14.04;ReadPosRankSum=1.439;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:530,317:0.37:847
chr7	100551666	rs74318947	A	T	11776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=859;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.853;QD=13.74;ReadPosRankSum=1.636;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:541,316:0.37:857
chr7	100551687	rs73714240	T	C	11111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=844;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.902;QD=13.21;ReadPosRankSum=0.451;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:541,300:0.36:841
chr7	100551692	rs73714242	C	T	11031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.699;ClippingRankSum=0.000;DB;DP=857;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.905;QD=12.92;ReadPosRankSum=0.146;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:550,304:0.36:854
chr7	100551719	rs73714243	C	T	11671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.666;ClippingRankSum=0.000;DB;DP=858;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.825;QD=13.67;ReadPosRankSum=-3.178;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:533,321:0.38:854
chr7	100551729	rs73714244	C	T	11862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.128;ClippingRankSum=0.000;DB;DP=896;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.826;QD=13.30;ReadPosRankSum=-3.159;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:557,335:0.38:892
chr7	100551773	rs73398734	C	A	15699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.461;ClippingRankSum=0.000;DB;DP=1053;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.239;QD=14.98;ReadPosRankSum=1.038;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:634,414:0.40:1048
chr7	100551778	rs73714247	G	A	16516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.435;ClippingRankSum=0.000;DB;DP=1067;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.210;QD=15.55;ReadPosRankSum=0.536;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:630,432:0.41:1062
chr7	100551793	rs73398735	G	T	16533.77	.	AC=1;AF=0.500;AN=2;DB;DP=1138;set=Intersection	GT:AD:AF:DP	0/1:662,470:0.42:1132
chr7	100551799	rs200943429	A	G	9093.77	.	AC=1;AF=0.500;AN=2;DB;DP=1183;set=Intersection	GT:AD:AF:DP	0/1:725,450:0.38:1175
chr7	100551840	rs78273697	T	A	22954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=1332;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.31;ReadPosRankSum=-0.686;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:729,597:0.45:1326
chr7	100551842	rs75365561	CT	TC	23397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=1333;ExcessHet=3.0103;FS=1.111;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=-0.580;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:730,597:0.45:1327
chr7	100551849	rs77242346	A	T	23062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.544;ClippingRankSum=0.000;DB;DP=1349;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.17;ReadPosRankSum=-0.949;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:732,611:0.45:1343
chr7	100552017	rs9691167	C	T	19207.77	.	AC=1;AF=0.500;AN=2;DB;DP=1546;set=Intersection	GT:AD:AF:DP	0/1:674,863:0.56:1537
chr7	100552018	rs76249962	T	G	25093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=1523;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=0.600;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:855,659:0.44:1514
chr7	100552018	.	TCC	GCT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=3;HapScore=1;MGOF=12;MMLQ=23;MQ=59.99;NF=296;NR=311;PP=2944;QD=20;SC=TCCAGTGTTCTCCACTACCAT;SbPval=0.44;Source=Platypus;TC=1482;TCF=745;TCR=737;TR=607;WE=100552028;WS=100552007;set=Platypus	GT:AD:AF:DP	1/0:875,607:0.41:1482
chr7	100552020	rs78680358	C	T	25468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=1527;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.577;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:860,658:0.43:1518
chr7	100552044	rs73714250	T	G	22194.77	.	AC=1;AF=0.500;AN=2;DB;DP=1414;set=Intersection	GT:AD:AF:DP	0/1:788,618:0.44:1406
chr7	100552094	rs62483698	G	C	19360.77	.	AC=1;AF=0.500;AN=2;DB;DP=1247;set=Intersection	GT:AD:AF:DP	0/1:695,544:0.44:1239
chr7	100552117	rs62483699	G	T	20714.77	.	AC=1;AF=0.500;AN=2;DB;DP=1193;set=Intersection	GT:AD:AF:DP	0/1:651,534:0.45:1185
chr7	100552135	rs62483700	T	C	20168.77	.	AC=1;AF=0.500;AN=2;DB;DP=1205;set=Intersection	GT:AD:AF:DP	0/1:649,548:0.46:1197
chr7	100552251	rs9691900	T	C	26320.77	.	AC=2;AF=1.00;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	1/1:0,939:1.00:939
chr7	100552311	rs12535515	C	T	7259.77	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:445,338:0.43:783
chr7	100552338	rs73398798	C	T	10791.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:408,307:0.43:715
chr7	100552358	rs73714254	C	G	10672.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:406,278:0.41:684
chr7	100552371	rs73714255	C	G	10078.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:389,262:0.40:651
chr7	100552384	rs75597914	A	G	9741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.168;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=1.096;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:385,256:0.40:641
chr7	100552390	rs73714257	T	C	9538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.045;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=1.584;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:372,245:0.40:617
chr7	100552412	rs73714259	T	C	9633.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:392,256:0.40:648
chr7	100552435	rs76244845	TC	AT	10530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.249;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=1.159;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.88;ReadPosRankSum=1.134;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:392,271:0.41:663
chr7	100552440	rs80290400	C	T	10206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=1.499;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:399,273:0.41:672
chr7	100552535	rs73163758	GT	AC	25614.77	.	AC=1;AF=0.500;AN=2;DB;DP=1559;JOINED;set=Intersection	GT:AD:AF:DP	0/1:878,672:0.43:1550
chr7	100552549	rs73163760	CT	AC	28965.77	.	AC=1;AF=0.500;AN=2;DB;DP=1799;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1026,765:0.43:1791
chr7	100552644	rs2904850	C	A	41202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.706;ClippingRankSum=0.000;DB;DP=2843;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=1.730;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:1655,1147:0.41:2802
chr7	100552657	rs75471530	A	G	43035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.617;ClippingRankSum=0.000;DB;DP=2801;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=3.057;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:1677,1111:0.40:2788
chr7	100552657	.	ACT	GCC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=1;MGOF=28;MMLQ=23;MQ=59.97;NF=502;NR=496;PP=2944;QD=20;SC=CCCACCCACCACTAGGACTTC;SbPval=0.52;Source=Platypus;TC=2770;TCF=1395;TCR=1375;TR=998;WE=100552667;WS=100552630;set=Platypus	GT:AD:AF:DP	1/0:1772,998:0.36:2770
chr7	100552659	rs78182596	T	C	42470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.680;ClippingRankSum=0.000;DB;DP=2789;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=2.463;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:1661,1115:0.40:2776
chr7	100552675	rs73163764	C	T	40537.77	.	AC=1;AF=0.500;AN=2;DB;DP=2822;set=Intersection	GT:AD:AF:DP	0/1:1693,1115:0.40:2808
chr7	100552711	rs75799835	T	A	40534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=2680;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=-2.299;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:1582,1084:0.41:2666
chr7	100552711	.	TCA	ACG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=24;MMLQ=19;MQ=59.98;NF=447;NR=513;PP=2944;QD=20;SC=CACCCTTACATCACGCAGGAC;SbPval=0.55;Source=Platypus;TC=2650;TCF=1242;TCR=1408;TR=960;WE=100552747;WS=100552700;set=Platypus	GT:AD:AF:DP	1/0:1690,960:0.36:2650
chr7	100552713	rs75130157	A	G	41089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.428;ClippingRankSum=0.000;DB;DP=2666;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-1.602;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:1584,1069:0.40:2653
chr7	100552727	rs74529310	G	C	40447.77	.	AC=1;AF=0.500;AN=2;DB;DP=2580;set=Intersection	GT:AD:AF:DP	0/1:1516,1053:0.41:2569
chr7	100552738	rs79874934	CA	TG	39296.77	.	AC=1;AF=0.500;AN=2;DB;DP=2473;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1460,1004:0.41:2464
chr7	100552788	rs73398800	C	T	18645.77	.	AC=1;AF=0.500;AN=2;DB;DP=2118;set=Intersection	GT:AD:AF:DP	0/1:1216,887:0.42:2103
chr7	100552837	rs73714264	G	A	24136.77	.	AC=1;AF=0.500;AN=2;DB;DP=1534;set=Intersection	GT:AD:AF:DP	0/1:842,681:0.45:1523
chr7	100552854	rs73714265	G	A	23179.77	.	AC=1;AF=0.500;AN=2;DB;DP=1328;set=Intersection	GT:AD:AF:DP	0/1:725,596:0.45:1321
chr7	100552867	rs73714266	T	C	20188.77	.	AC=1;AF=0.500;AN=2;DB;DP=1160;set=Intersection	GT:AD:AF:DP	0/1:629,525:0.45:1154
chr7	100552915	rs2904852	A	C	31454.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:0,836:1.00:836
chr7	100552978	rs73163765	T	C	10923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.462;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=1.395;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:319,288:0.47:607
chr7	100552984	rs73163766	T	C	10952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=1.447;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:315,278:0.47:593
chr7	100553002	rs68094465	A	G	10251.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:287,276:0.49:563
chr7	100553073	rs73714269	T	A	7515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.42;ReadPosRankSum=0.024;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:193,194:0.50:387
chr7	100553077	rs73714270	A	C	7487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.941;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=-0.502;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:185,194:0.51:379
chr7	100553117	rs73400705	G	A	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:122,126:0.51:248
chr7	100555116	.	A	ATT,ATTT	1582.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=52.70;MQRankSum=0.575;QD=28.78;ReadPosRankSum=-0.286;SOR=0.674;set=HC	GT:AD:AF:DP	1/2:3,19,33:0.35,0.60:55
chr7	100606332	.	A	ATTTTTTTTT	249.75	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.78;QD=27.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	100606918	rs4316092	A	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	100607640	.	G	GCT	2583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=3.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=0.850;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:61,66:0.52:127
chr7	100607643	.	CTCT	C	2574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=5.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=1.598;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:67,67:0.50:134
chr7	100607851	rs6960854	C	G	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:146,123:0.46:269
chr7	100607871	rs6960868	C	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:117,90:0.43:207
chr7	100607903	rs6961167	G	A	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:77,56:0.42:133
chr7	100608154	rs10250885	G	A	7110.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=35.03;SOR=3.633;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	100608154	.	GGATAAGGGAGAG	AGATAAGGGAGAG,AGATGAGGCAGGC	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=5;HapScore=1;MGOF=35;MMLQ=28;MQ=59.99;NF=157,29;NR=26,1;PP=2962,2914;QD=20;SC=TATTCAGGGGGGATAAGGGAG;SbPval=0.49;Source=Platypus;TC=207;TCF=178;TCR=29;TR=183,30;WE=100608205;WS=100608144;set=Platypus	GT:AF:DP	0/1:0.88:207
chr7	100608158	rs79221376	A	G	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.411;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=23.533;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.893;QD=6.84;ReadPosRankSum=-0.835;SOR=3.308;set=HC	GT:AD:AF:DP	0/1:174,48:0.22:222
chr7	100608162	rs79761591	G	C	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.225;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=32.436;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.945;QD=6.59;ReadPosRankSum=-0.338;SOR=3.887;set=HC	GT:AD:AF:DP	0/1:195,51:0.21:246
chr7	100608165	rs76431635	A	G	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.626;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=37.041;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.926;QD=6.46;ReadPosRankSum=-0.564;SOR=4.071;set=HC	GT:AD:AF:DP	0/1:206,55:0.21:261
chr7	100608166	rs75884804	G	C	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=39.394;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.940;QD=6.35;ReadPosRankSum=-0.399;SOR=4.198;set=HC	GT:AD:AF:DP	0/1:209,55:0.21:264
chr7	100608180	rs77646533	C	G	1831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=61.271;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.004;QD=5.85;ReadPosRankSum=0.025;SOR=4.953;set=HC	GT:AD:AF:DP	0/1:251,62:0.20:313
chr7	100608188	.	C	CT	1872.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.060;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=70.854;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.064;QD=5.44;ReadPosRankSum=0.815;SOR=5.195;set=HC	GT:AD:AF:DP	0/1:279,65:0.19:344
chr7	100608190	.	C	T	1914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.944;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=73.313;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.074;QD=5.44;ReadPosRankSum=1.162;SOR=5.257;set=HC	GT:AD:AF:DP	0/1:286,66:0.19:352
chr7	100608194	.	C	CGTCTGGG	2811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.063;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=59.717;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.067;QD=7.58;ReadPosRankSum=0.856;SOR=4.024;set=HC	GT:AD:AF:DP	0/1:301,70:0.19:371
chr7	100608196	rs77373587	C	G	3013.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.739;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=81.784;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.868;QD=7.59;ReadPosRankSum=-0.760;SOR=4.504;set=HC	GT:AD:AF:DP	0/1:309,88:0.22:397
chr7	100608197	.	A	AGGG	3033.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.374;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=47.610;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.871;QD=7.45;ReadPosRankSum=-0.737;SOR=4.653;set=HC	GT:AD:AF:DP	0/1:317,90:0.22:407
chr7	100608201	rs77005990	C	T	2985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.502;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=41.430;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.827;QD=6.99;ReadPosRankSum=-0.969;SOR=4.070;set=HC	GT:AD:AF:DP	0/1:329,98:0.23:427
chr7	100608247	rs73163788	T	C	10076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=853;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=9.503;QD=11.81;ReadPosRankSum=-2.304;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:573,280:0.33:853
chr7	100608255	rs79638688	C	G	11371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=914;ExcessHet=3.0103;FS=4.497;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=12.000;QD=12.44;ReadPosRankSum=-0.858;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:612,302:0.33:914
chr7	100608268	rs141757611	C	CCTTAACCCCTTGAT	16116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.174;ClippingRankSum=0.000;DB;DP=1059;ExcessHet=3.0103;FS=8.980;MLEAC=1;MLEAF=0.500;MQ=61.36;MQRankSum=17.179;QD=15.22;ReadPosRankSum=0.472;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:697,362:0.34:1059
chr7	100608370	rs73714276	A	C	19955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DB;DP=1130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.24;MQRankSum=18.051;QD=17.66;ReadPosRankSum=-0.795;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:588,542:0.48:1130
chr7	100608375	rs75592954	G	A	19432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.991;ClippingRankSum=0.000;DB;DP=1060;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=62.08;MQRankSum=16.870;QD=18.33;ReadPosRankSum=-0.347;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:557,503:0.47:1060
chr7	100608406	rs77168191	AT	GC	11896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.850;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=2.680;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=7.704;QD=17.52;ReadPosRankSum=-0.403;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:371,308:0.45:679
chr7	100608411	rs79831534	C	T	11199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.699;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=4.894;QD=17.67;ReadPosRankSum=-0.030;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:349,285:0.45:634
chr7	100608416	rs77070494	C	T	10621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=3.561;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.223;QD=17.79;ReadPosRankSum=0.206;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:329,268:0.45:597
chr7	100608419	rs79505270	CT	GG	10156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.108;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=2.722;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=0.523;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:312,252:0.45:564
chr7	100608423	rs77841377	C	T	9410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=-0.049;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:290,243:0.46:533
chr7	100608472	rs10251045	C	G	8437.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr7	100608493	rs77278976	T	C	2816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.509;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=6.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.707;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:93,74:0.44:167
chr7	100608498	rs77518728	A	C	2906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.415;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=4.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=-1.170;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:90,75:0.45:165
chr7	100608502	rs76981580	T	C	2771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=5.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-1.646;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:84,72:0.46:156
chr7	100608572	rs10251414	G	C	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:85,58:0.41:143
chr7	100608710	rs62483706	A	C	7550.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:407,371:0.48:778
chr7	100608778	rs73163792	TC	CT	13325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=1.651;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:352,352:0.50:704
chr7	100608826	rs73163794	C	G	5380.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:251,247:0.50:498
chr7	100608868	rs67377634	A	G	6114.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:164,174:0.51:338
chr7	100608884	rs73163797	G	A	5440.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:143,141:0.50:284
chr7	100608912	rs73163798	A	G	3276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=1.460;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:97,87:0.47:184
chr7	100608920	rs2904863	T	C	3185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.74;ReadPosRankSum=1.010;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:87,83:0.49:170
chr7	100608929	rs80040741	G	T	3125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.54;ReadPosRankSum=0.637;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:80,80:0.50:160
chr7	100608953	rs78404383	TA	CT	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.536;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.216;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.35;ReadPosRankSum=2.153;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:59,46:0.44:105
chr7	100608958	rs76888130	T	C	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=2.223;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:55,42:0.43:97
chr7	100608961	rs74773493	C	T	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.345;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=1.580;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:51,41:0.45:92
chr7	100608964	rs77850164	G	T	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.50;ReadPosRankSum=1.088;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:48,40:0.45:88
chr7	100609486	rs62483707	C	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr7	100609966	rs10274451	T	C	7495.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:234,204:0.47:438
chr7	100609987	rs10274460	T	C	7921.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:235,221:0.48:456
chr7	100610026	rs10229209	A	C	9857.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:88,415:0.83:503
chr7	100610069	rs10258821	C	T	4830.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:199,223:0.53:422
chr7	100612723	rs6949119	A	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.311;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr7	100612766	rs71901679	CTGTCCAGGCACTT	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-1.963;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chr7	100612786	rs73168325	G	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:52,17:0.25:69
chr7	100612839	rs76449674	A	G	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.099;QD=11.01;ReadPosRankSum=-1.325;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:93,43:0.32:136
chr7	100612842	rs79514982	T	C	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.076;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.051;QD=11.66;ReadPosRankSum=-1.699;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:93,45:0.33:138
chr7	100612865	rs78097765	C	T	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.988;QD=12.49;ReadPosRankSum=-0.098;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:109,56:0.34:165
chr7	100612869	rs74554402	G	A	2186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.024;QD=12.94;ReadPosRankSum=0.728;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:113,56:0.33:169
chr7	100612875	rs75162633	C	T	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.989;QD=12.26;ReadPosRankSum=0.647;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:121,62:0.34:183
chr7	100612898	rs73168327	T	C	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.012;QD=10.99;ReadPosRankSum=2.111;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:140,70:0.33:210
chr7	100612945	rs76619309	C	T	2042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.143;QD=9.92;ReadPosRankSum=-0.892;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:143,63:0.31:206
chr7	100612952	rs79881008	G	A	1935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.300;QD=9.40;ReadPosRankSum=0.664;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:149,57:0.28:206
chr7	100612955	rs150485202	A	ACTG	2097.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:147,56:0.28:203
chr7	100612961	rs78487486	G	C	1724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=1.411;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:145,51:0.26:196
chr7	100612969	rs73168328	A	G	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.504;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:135,52:0.28:187
chr7	100612996	rs76589634	A	G	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:107,45:0.30:152
chr7	100613010	rs80354726	T	C	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.665;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:101,42:0.29:143
chr7	100613011	rs79331440	G	A	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-0.913;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:99,42:0.30:141
chr7	100613018	rs78041688	A	C	1452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.053;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:94,40:0.30:134
chr7	100613027	rs73168330	T	C	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=0.501;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:83,30:0.27:113
chr7	100613059	rs66842488	GCCT	G	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr7	100613107	rs73168333	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-0.640;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	100613112	rs75250895	G	C	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.065;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr7	100613127	rs73168334	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.647;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr7	100615281	rs73400789	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	100615311	rs79784813	A	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=-0.571;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr7	100615313	rs79548447	G	A	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=-0.209;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	100615321	rs75376427	G	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.686;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr7	100615353	rs73168339	C	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.02;ReadPosRankSum=-0.302;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr7	100615359	rs73168341	A	G	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-0.409;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr7	100615377	rs33957279	AC	A	999.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr7	100615387	rs75466554	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr7	100615445	rs5021607	A	G	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.034;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.559;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr7	100615449	rs5021606	C	G	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=-0.436;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr7	100615453	rs5021605	T	C	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=-0.472;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:46,23:0.33:69
chr7	100615454	rs5021604	G	C	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-0.760;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr7	100615458	rs5021603	A	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-1.035;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr7	100615460	rs5021602	A	G	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-1.225;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr7	100615461	rs5021601	T	A	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-1.279;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr7	100615477	rs5021600	G	A	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-2.272;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr7	100615494	rs33959976	GTA	G	738.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr7	100615500	rs77817912	A	G	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.979;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr7	100615503	rs33984975	CAG	C	744.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr7	100615521	rs79951460	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=1.599;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr7	100615525	rs76946448	C	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=1.974;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr7	100615531	rs79277318	T	G	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=2.469;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr7	100615533	rs75698243	C	A	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=2.044;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr7	100615570	rs73168342	T	G	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=1.242;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr7	100615580	rs75806374	T	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=0.152;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr7	100615583	rs75125684	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=0.890;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr7	100615584	rs76813732	G	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=1.270;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr7	100615615	rs73168345	T	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.016;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-1.388;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr7	100615625	rs76422948	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.385;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-1.912;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr7	100615631	rs77947559	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-1.604;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr7	100615635	.	CTT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-1.623;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr7	100615639	.	C	CCT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.14;ReadPosRankSum=-1.562;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr7	100616181	rs76074645	C	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-3.317;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:75,9:0.11:84
chr7	100616185	rs79851456	CA	TG	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-3.341;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:74,10:0.12:84
chr7	100616195	rs77180957	GC	CT	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.256;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.312;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:81,11:0.12:92
chr7	100616199	rs78022349	T	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.671;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:83,11:0.12:94
chr7	100616227	rs75588135	A	T	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.217;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr7	100616229	rs78091742	G	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.028;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr7	100616245	rs79948354	C	A	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.967;QD=6.09;ReadPosRankSum=0.954;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr7	100616258	rs73168346	C	T	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.326;QD=9.53;ReadPosRankSum=-0.616;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:84,31:0.27:115
chr7	100616277	rs117288840	A	G	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-3.934;QD=7.91;ReadPosRankSum=0.472;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:84,28:0.25:112
chr7	100616279	.	C	G	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-3.934;QD=7.96;ReadPosRankSum=0.336;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:84,28:0.25:112
chr7	100616288	rs201235128	G	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-3.914;QD=8.05;ReadPosRankSum=-0.008;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr7	100616310	rs199943216	G	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-4.190;QD=7.34;ReadPosRankSum=0.806;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:78,23:0.23:101
chr7	100616313	rs200896810	T	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-4.242;QD=6.76;ReadPosRankSum=0.978;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr7	100616320	rs200695576	G	A	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-4.190;QD=6.93;ReadPosRankSum=0.381;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:78,23:0.23:101
chr7	100616332	rs369342199	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-4.237;QD=7.66;ReadPosRankSum=-0.506;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr7	100616336	.	G	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-4.437;QD=6.43;ReadPosRankSum=-0.319;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr7	100616338	.	A	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-4.501;QD=6.26;ReadPosRankSum=-0.367;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr7	100616344	.	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-4.401;QD=6.12;ReadPosRankSum=-0.947;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr7	100616362	.	TAA	T	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-4.554;QD=6.11;ReadPosRankSum=-2.346;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr7	100616366	.	A	ACATGTTTGTT	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=8.570;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-3.027;QD=4.35;ReadPosRankSum=-1.788;SOR=2.462;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr7	100616371	.	T	TATTTATTTATTTGAGACAG	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=11.155;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-3.736;QD=1.77;ReadPosRankSum=-2.308;SOR=3.198;set=HC	GT:AD:AF:DP	0/1:42,6:0.12:48
chr7	100624718	rs4363124	G	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	100633827	rs11762738	C	A	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.437;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:168,51:0.23:219
chr7	100634476	rs6980143	C	G	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:58,113:0.66:171
chr7	100634640	rs1791	T	G	17417.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr7	100634783	rs11770526	A	C	2556.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:304,138:0.31:442
chr7	100634964	rs4370452	C	A	14592.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:174,602:0.78:776
chr7	100635143	rs34337783	T	C	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.164;ClippingRankSum=0.000;DB;DP=976;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.764;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:793,179:0.18:972
chr7	100635375	rs10808115	A	C	10770.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:129,468:0.78:597
chr7	100635591	rs10953312	C	A	6595.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:42,256:0.86:298
chr7	100635661	rs10953313	T	C	23665.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr7	100635679	rs10953314	C	G	12541.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:116,504:0.81:620
chr7	100635767	rs34214710	G	C	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=1035;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.793;QD=0.58;ReadPosRankSum=1.764;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:890,139:0.14:1029
chr7	100635890	rs35002853	C	T	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=0.877;QD=2.01;ReadPosRankSum=2.168;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:480,108:0.18:588
chr7	100647819	rs11766024	C	T	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:87,162:0.65:249
chr7	100647875	rs11766048	C	A	10088.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr7	100647920	rs11772963	A	C	6382.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:138,270:0.66:408
chr7	100648029	rs10953315	G	A	12708.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr7	100648117	rs11766125	C	G	6680.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:139,284:0.67:423
chr7	100648875	rs6964653	A	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,44:0.40:110
chr7	100651855	rs12532750	A	G	2452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=16.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=0.011;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:59,101:0.63:160
chr7	100652317	rs12540832	T	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr7	100656003	rs3924886	G	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr7	100658717	rs10229453	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr7	100663606	rs13242391	T	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr7	100674309	rs80250975	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr7	100675376	rs10229731	A	C	6409.77	.	AC=1;AF=0.500;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	0/1:599,320:0.35:919
chr7	100675512	rs10259584	G	A	8554.77	.	AC=1;AF=0.500;AN=2;DB;DP=1101;set=Intersection	GT:AD:AF:DP	0/1:685,409:0.37:1094
chr7	100675976	rs56103274	G	A	21205.77	.	AC=1;AF=0.500;AN=2;DB;DP=1439;set=Intersection	GT:AD:AF:DP	0/1:498,933:0.65:1431
chr7	100676409	rs34834039	C	T	10903.77	.	AC=1;AF=0.500;AN=2;DB;DP=1803;set=Intersection	GT:AD:AF:DP	0/1:1211,580:0.32:1791
chr7	100677279	rs76184171	G	C	4737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;ClippingRankSum=0.000;DB;DP=1908;ExcessHet=3.0103;FS=9.250;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-23.525;QD=2.49;ReadPosRankSum=4.512;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:1670,234:0.12:1904
chr7	100677378	rs143956720	C	A	6968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=2226;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-22.588;QD=3.15;ReadPosRankSum=-4.115;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:1895,318:0.14:2213
chr7	100677405	rs141963257	G	A	9550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.531;ClippingRankSum=0.000;DB;DP=2371;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-18.878;QD=4.05;ReadPosRankSum=-1.867;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:1988,368:0.16:2356
chr7	100677409	rs150735476	G	A	9717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.099;ClippingRankSum=0.000;DB;DP=2393;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-17.295;QD=4.08;ReadPosRankSum=-1.929;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:1997,382:0.16:2379
chr7	100677415	rs57597607	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=2415;ExcessHet=3.0103;FS=6.049;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-22.542;QD=0.03;ReadPosRankSum=-2.252;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:2132,265:0.11:2397
chr7	100677455	rs61075804	G	A	22101.77	.	AC=1;AF=0.500;AN=2;DB;DP=2657;set=Intersection	GT:AD:AF:DP	0/1:1782,854:0.32:2636
chr7	100677457	rs59155935	G	T	2258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.694;ClippingRankSum=0.000;DB;DP=2660;ExcessHet=3.0103;FS=6.484;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-33.995;QD=0.85;ReadPosRankSum=2.815;SOR=1.331;set=HC	GT:AD:AF:DP	0/1:2268,378:0.14:2646
chr7	100677502	rs10267904	G	A	16676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.000;DB;DP=2838;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-2.831;QD=5.90;ReadPosRankSum=1.858;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:2229,598:0.21:2827
chr7	100677516	rs58478927	A	G	10899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0.000;DB;DP=2669;ExcessHet=3.0103;FS=4.751;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-30.473;QD=4.10;ReadPosRankSum=3.227;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:2229,430:0.16:2659
chr7	100677519	rs148817224	C	T	10800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.464;ClippingRankSum=0.000;DB;DP=2639;ExcessHet=3.0103;FS=3.622;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-30.394;QD=4.11;ReadPosRankSum=3.277;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:2205,424:0.16:2629
chr7	100677523	rs10238201	A	C	35463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.911;ClippingRankSum=0.000;DB;DP=2647;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-27.066;QD=13.45;ReadPosRankSum=4.394;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:1684,953:0.36:2637
chr7	100677526	rs10238202	A	C	35012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.138;ClippingRankSum=0.000;DB;DP=2640;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-26.232;QD=13.31;ReadPosRankSum=4.209;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:1682,948:0.36:2630
chr7	100677556	rs4373459	A	C	5984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.516;ClippingRankSum=0.000;DB;DP=2465;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-4.235;QD=2.44;ReadPosRankSum=0.256;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:1983,472:0.19:2455
chr7	100677572	rs60940057	A	G	2128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.304;ClippingRankSum=0.000;DB;DP=2341;ExcessHet=3.0103;FS=5.340;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-15.308;QD=0.93;ReadPosRankSum=-4.542;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:1960,328:0.14:2288
chr7	100677586	rs189731103	A	G	6225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DB;DP=2271;ExcessHet=3.0103;FS=8.249;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-11.370;QD=2.76;ReadPosRankSum=5.470;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:1775,480:0.21:2255
chr7	100677625	rs115078078	G	A	12498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.420;ClippingRankSum=0.000;DB;DP=2071;ExcessHet=3.0103;FS=19.932;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-16.680;QD=6.14;ReadPosRankSum=0.621;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:1576,458:0.23:2034
chr7	100677630	rs78990442	C	T	22144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.359;ClippingRankSum=0.000;DB;DP=2051;ExcessHet=3.0103;FS=13.853;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-19.905;QD=11.12;ReadPosRankSum=2.112;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:1257,735:0.37:1992
chr7	100678372	rs11769823	T	G	5436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=2223;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=2.556;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:1764,444:0.20:2208
chr7	100678405	rs4729648	T	C	13714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.712;ClippingRankSum=0.000;DB;DP=2246;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.553;QD=6.14;ReadPosRankSum=-2.363;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:1777,456:0.20:2233
chr7	100678407	rs4729649	G	A	13791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.152;ClippingRankSum=0.000;DB;DP=2255;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.560;QD=6.15;ReadPosRankSum=-2.248;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:1787,455:0.20:2242
chr7	100678417	rs138486268	AA	CC	13435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.515;ClippingRankSum=0.000;DB;DP=2281;ExcessHet=3.0103;FS=1.443;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.636;QD=5.92;ReadPosRankSum=-0.196;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:1839,429:0.19:2268
chr7	100678421	rs10265276	T	A	29831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=2262;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.878;QD=13.29;ReadPosRankSum=1.398;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:1213,1032:0.46:2245
chr7	100678426	rs4729650	C	T	12589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.280;ClippingRankSum=0.000;DB;DP=2275;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.648;QD=5.57;ReadPosRankSum=0.078;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:1839,423:0.19:2262
chr7	100678433	rs4729651	AC	TA	12855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.700;ClippingRankSum=0.000;DB;DP=2299;ExcessHet=3.0103;FS=0.679;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-2.101;QD=5.62;ReadPosRankSum=0.510;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:1864,422:0.18:2286
chr7	100678442	rs4729653	C	G	12274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.999;ClippingRankSum=0.000;DB;DP=2326;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-2.057;QD=5.30;ReadPosRankSum=-0.296;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:1872,442:0.19:2314
chr7	100678481	rs73168389	A	T	13175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.799;ClippingRankSum=0.000;DB;DP=2256;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.842;QD=5.88;ReadPosRankSum=1.486;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:1797,445:0.20:2242
chr7	100678483	rs73168390	C	T	13295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.341;ClippingRankSum=0.000;DB;DP=2259;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.835;QD=5.93;ReadPosRankSum=1.816;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:1797,447:0.20:2244
chr7	100678527	rs73402889	G	T	11182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=2033;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-5.477;QD=5.53;ReadPosRankSum=-1.347;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:1596,427:0.21:2023
chr7	100678560	rs77199586	C	A	11681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.589;ClippingRankSum=0.000;DB;DP=1884;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-10.135;QD=6.23;ReadPosRankSum=1.423;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:1493,383:0.20:1876
chr7	100678568	rs75492258	A	T	11058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=1864;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-10.989;QD=5.96;ReadPosRankSum=1.965;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:1482,374:0.20:1856
chr7	100678610	rs78010183	A	T	7849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.848;ClippingRankSum=0.000;DB;DP=1680;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-13.038;QD=4.68;ReadPosRankSum=2.801;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:1385,291:0.17:1676
chr7	100678616	rs113959201	G	A	7892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=1680;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-13.617;QD=4.71;ReadPosRankSum=2.013;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:1393,284:0.17:1677
chr7	100678622	rs77299546	G	A	6791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.335;ClippingRankSum=0.000;DB;DP=1659;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-14.116;QD=4.10;ReadPosRankSum=2.407;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:1391,264:0.16:1655
chr7	100678740	rs4269454	T	C	9171.77	.	AC=1;AF=0.500;AN=2;DB;DP=1428;set=Intersection	GT:AD:AF:DP	0/1:922,495:0.35:1417
chr7	100678820	rs4367469	T	C	8986.77	.	AC=1;AF=0.500;AN=2;DB;DP=1416;set=Intersection	GT:AD:AF:DP	0/1:914,494:0.35:1408
chr7	100679136	rs7780935	T	C	8995.77	.	AC=1;AF=0.500;AN=2;DB;DP=1207;set=Intersection	GT:AD:AF:DP	0/1:771,431:0.36:1202
chr7	100679366	rs74209688	A	G	24480.77	.	AC=1;AF=0.500;AN=2;DB;DP=1666;set=Intersection	GT:AD:AF:DP	0/1:621,1035:0.62:1656
chr7	100679752	rs4992072	T	C	7443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;ClippingRankSum=0.000;DB;DP=1351;ExcessHet=3.0103;FS=8.305;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-9.037;QD=5.54;ReadPosRankSum=7.733;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:1088,255:0.19:1343
chr7	100679754	rs4992073	C	G	7445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=1347;ExcessHet=3.0103;FS=8.244;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-9.414;QD=5.56;ReadPosRankSum=8.042;SOR=1.271;set=HC	GT:AD:AF:DP	0/1:1079,260:0.19:1339
chr7	100679809	rs4992074	C	T	8174.77	.	AC=1;AF=0.500;AN=2;DB;DP=1457;set=Intersection	GT:AD:AF:DP	0/1:988,460:0.32:1448
chr7	100679902	rs55974941	A	G	25813.77	.	AC=1;AF=0.500;AN=2;DB;DP=1698;set=Intersection	GT:AD:AF:DP	0/1:580,1106:0.66:1686
chr7	100680005	.	T	A	11253.77	.	AC=1;AF=0.500;AN=2;DP=1713;set=Intersection	GT:AD:AF:DP	0/1:1112,591:0.35:1703
chr7	100680370	rs10257974	C	T	11516.77	.	AC=1;AF=0.500;AN=2;DB;DP=1753;set=Intersection	GT:AD:AF:DP	0/1:1142,595:0.34:1737
chr7	100680939	rs36120435	C	A	5559.77	.	AC=1;AF=0.500;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	0/1:638,292:0.31:930
chr7	100680983	rs28593004	G	A	5408.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:657,288:0.30:945
chr7	100681172	rs28555173	A	G	7533.77	.	AC=1;AF=0.500;AN=2;DB;DP=1263;set=Intersection	GT:AD:AF:DP	0/1:840,415:0.33:1255
chr7	100681762	rs10953316	A	G	42247.77	.	AC=2;AF=1.00;AN=2;DB;DP=1563;set=Intersection	GT:AD:AF:DP	1/1:0,1552:1.00:1552
chr7	100682275	rs4386914	A	G	7970.77	.	AC=1;AF=0.500;AN=2;DB;DP=1252;set=Intersection	GT:AD:AF:DP	0/1:818,425:0.34:1243
chr7	100684550	rs35090328	A	G	10744.77	.	AC=1;AF=0.500;AN=2;DB;DP=1843;set=Intersection	GT:AD:AF:DP	0/1:1260,580:0.32:1840
chr7	100684593	rs35988443	G	A	11455.77	.	AC=1;AF=0.500;AN=2;DB;DP=1791;set=Intersection	GT:AD:AF:DP	0/1:1192,594:0.33:1786
chr7	100691073	rs34411816	T	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr7	100692553	rs77235403	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr7	100692680	rs10246021	T	G	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	100693849	rs6978780	C	T	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:82,136:0.62:218
chr7	100695058	rs6966570	T	C	6887.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr7	100731505	rs4524722	C	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	100731748	rs61730718	T	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=2.207;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:119,45:0.27:164
chr7	100731829	rs6948536	T	C	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr7	100731896	rs61730716	T	C	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:237,100:0.30:337
chr7	100775087	rs143613360	A	AAAC	1570.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.28;ReadPosRankSum=-0.541;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr7	100776931	rs2227684	G	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:54,97:0.64:151
chr7	100780176	rs2227694	A	G	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	100781445	rs7242	T	G	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:47,82:0.64:129
chr7	100800131	rs4727481	T	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	100800635	rs2074686	G	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	100803614	rs2074683	C	T	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	100803694	rs139132282	G	A	2332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.573;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:280,154:0.35:434
chr7	100804140	rs1048303	C	T	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	100804240	rs113505007	T	TACCTCC	1614.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	100815279	rs740103	G	A	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	100816527	rs2009973	A	G	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	100818101	rs733965	A	G	6649.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr7	100818193	rs2015923	G	C	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	100841389	rs2158612	A	C	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	100849804	rs4729670	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr7	100853173	rs1468358	T	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr7	100860401	rs28361887	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr7	100860636	rs1056678	T	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=1.337;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr7	100861213	rs17319250	T	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:206,109:0.35:315
chr7	100861452	rs11769624	T	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:133,60:0.31:193
chr7	100865847	rs10953329	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr7	100875772	rs1047319	T	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:120,54:0.31:174
chr7	100877456	rs2302428	T	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-1.604;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:76,27:0.26:103
chr7	100965096	rs11369267	A	AG	4317.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	101006216	rs4989271	G	C	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-0.985;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr7	101006223	rs4989270	C	T	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-0.295;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr7	101006230	rs4989269	T	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.416;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr7	101006233	rs4989268	C	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=0.489;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr7	101006376	rs4989267	C	T	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.710;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:106,38:0.26:144
chr7	101006382	rs4989266	C	T	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-0.815;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:105,38:0.27:143
chr7	101006488	rs4989265	C	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=2.548;SOR=2.002;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr7	101090831	rs17135418	G	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	101123784	rs6963889	T	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.320;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr7	101126347	rs34682212	C	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	101126511	rs35677699	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.491;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr7	101126603	rs140382828	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.48;ReadPosRankSum=0.210;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	101126603	.	CA	TG	27	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=3;MGOF=41;MMLQ=24;MQ=60.0;NF=1;NR=3;PP=27;QD=20.1169687156;SC=CTCAGTCGCCCAAGTAGCTGG;SbPval=0.75;Source=Platypus;TC=10;TCF=3;TCR=7;TR=4;WE=101126612;WS=101126593;set=Platypus	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	101126604	rs28693638	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	101176150	rs75622700	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr7	101176531	rs6968239	G	A	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	101183108	rs6465817	T	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr7	101183248	rs375342624	G	A	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.043;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:200,126:0.39:326
chr7	101187190	rs58676608	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=2.278;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:46,23:0.33:69
chr7	101188812	rs60933561	CG	C	1059.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr7	101188852	rs9886175	T	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	101192512	.	C	CT	4146.73	.	AC=1;AF=0.500;AN=2;DP=251;set=Intersection	GT:AD:AF:DP	0/1:81,168:0.67:249
chr7	101194424	rs17135626	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,35:0.35:100
chr7	101196488	rs12674244	T	C	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr7	101196688	rs13235234	C	T	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.558;QD=3.57;ReadPosRankSum=-0.740;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:122,40:0.25:162
chr7	101196756	rs3800980	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	101199257	rs4729728	G	A	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	101200669	rs36008849	A	AG	12647.73	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr7	101200727	rs17393069	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:156,75:0.32:231
chr7	101200835	rs7809926	A	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	101256833	rs2240389	T	C	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:82,128:0.61:210
chr7	101257075	rs2240390	T	C	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.600;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:27,44:0.62:71
chr7	101265350	rs4263675	T	C	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	101267435	rs876825	T	C	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:37,106:0.74:143
chr7	101272465	rs848644	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	101459161	rs28650922	T	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	101556846	rs35514641	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr7	101671585	rs448877	A	G	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	101713590	rs377612	T	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr7	101740606	rs1637257	T	G	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.165;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:46,28:0.38:74
chr7	101740610	rs1734879	C	A	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.598;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr7	101740827	rs10638510	T	TTC	1152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.793;QD=13.25;ReadPosRankSum=-0.009;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:53,34:0.39:87
chr7	101747575	rs201480	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.425;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-1.731;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr7	101747593	.	G	GT	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.500;QD=2.16;ReadPosRankSum=-2.899;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:92,30:0.25:122
chr7	101754865	rs201493	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.364;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr7	101755060	rs9655774	A	G	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.129;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:109,40:0.27:149
chr7	101758584	rs201501	G	A	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.148;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:224,81:0.27:305
chr7	101837149	rs11540899	G	A	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:85,57:0.40:142
chr7	101843536	rs34285499	A	AT	615.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,45:0.39:115
chr7	101844851	rs60987662	A	G	3891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.772;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:612,235:0.28:847
chr7	101870599	rs430841	A	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	101882503	rs62484935	T	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr7	101892121	rs410825	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr7	101892328	rs368214	C	T	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:28,69:0.71:97
chr7	101916647	rs813000	A	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	101917521	rs803064	G	A	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	101917647	rs712839	A	G	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	101917772	rs712840	A	G	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	101923315	rs57030737	T	TC	12627.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr7	101925065	rs803069	G	T	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	101925338	rs2257738	A	G	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	101926087	rs73712454	G	T	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr7	101926228	rs803070	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	101928495	rs803074	G	C	11758.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr7	101928585	rs803075	G	A	14758.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr7	101953534	rs809120	T	G	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	101954412	rs4729780	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	102036396	rs28366045	AC	A	2383.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	102036769	rs56992893	CGGAGACTGCGTATGCG	C	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	102038153	rs67961431	CTGTGTG	CTG,C	5918.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=270;MQ=60.24;set=Intersection	GT:AF:DP	1/1:0.99:147
chr7	102046070	rs6971258	T	A	903.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	102046359	rs6955864	G	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	102063363	rs143532608	GGAAACATCC	G	2947.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	102063527	rs7384395	G	C	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	102063567	.	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=-0.921;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:99,22:0.18:121
chr7	102065322	rs1983476	A	G	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	102086891	rs12672132	C	T	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	102097847	rs368338131	G	A	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:37,83:0.69:120
chr7	102105984	rs10953368	T	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	102106857	rs140459331	CTTTA	C	531.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	102107697	rs11761361	G	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	102111936	rs60871950	G	A	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	102112980	rs3800987	G	A	7954.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	102113093	rs3800988	T	C	19197.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,712:1.00:712
chr7	102113563	rs61229695	TG	T	3949.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.83;SOR=1.505;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	102114989	rs145000593	T	TC	112	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.18;QD=28.00;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	102120821	rs11767570	T	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	102136543	rs746317	T	G	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.746;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.92;MQRankSum=-0.271;QD=4.51;ReadPosRankSum=-0.474;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:148,53:0.26:201
chr7	102136550	rs77782294	G	A	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.19;QD=31.30;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	102147148	.	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.16;MQRankSum=-1.382;QD=12.70;ReadPosRankSum=0.393;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr7	102180473	rs75359550	C	T	2580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.564;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-5.523;QD=10.66;ReadPosRankSum=-0.787;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:108,134:0.55:242
chr7	102180562	rs371406429	A	C	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-9.119;QD=2.52;ReadPosRankSum=2.382;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:152,42:0.22:194
chr7	102235692	.	G	GCT	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.736;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=36.419;MLEAC=1;MLEAF=0.500;MQ=52.44;MQRankSum=-6.051;QD=4.22;ReadPosRankSum=-0.802;SOR=4.406;set=HC	GT:AD:AF:DP	0/1:99,18:0.15:117
chr7	102235708	rs200503327	T	G	2177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=17.512;MLEAC=1;MLEAF=0.500;MQ=53.54;MQRankSum=-0.626;QD=12.89;ReadPosRankSum=6.576;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:65,104:0.62:169
chr7	102235769	rs144395384	T	C	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=13.843;MLEAC=1;MLEAF=0.500;MQ=51.16;MQRankSum=1.111;QD=5.53;ReadPosRankSum=-2.631;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:163,81:0.33:244
chr7	102235910	.	G	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.27;MQRankSum=-1.866;QD=11.99;ReadPosRankSum=-1.316;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	102246500	rs144574884	A	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.20;MQRankSum=1.034;QD=1.13;ReadPosRankSum=0.485;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr7	102318861	rs374405684	G	A	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.746;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=4.825;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=0.672;QD=1.51;ReadPosRankSum=1.047;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:332,65:0.16:397
chr7	102319015	rs138714346	G	T	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=0.236;QD=1.07;ReadPosRankSum=-0.490;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:458,82:0.15:540
chr7	102319079	rs368279784	G	A	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.94;MQRankSum=0.372;QD=7.71;ReadPosRankSum=-1.642;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:96,48:0.33:144
chr7	102343967	rs4729850	A	G	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr7	102389697	rs141352868	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,31:0.33:94
chr7	102389833	rs28695887	G	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	102398410	rs199537059	C	CT	648.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr7	102518909	rs72580510	A	AGT	2333.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:34,61:0.64:95
chr7	102553603	rs17135923	C	G	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:48,122:0.72:170
chr7	102574920	rs1057066	G	C	6876.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:151,308:0.67:459
chr7	102574999	rs3832497	TGAA	T	3864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.583;QD=10.77;ReadPosRankSum=-0.408;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:247,112:0.31:359
chr7	102616469	rs2228687	G	A	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	102616515	rs2228686	G	A	5477.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:77,235:0.75:312
chr7	102668001	rs7805950	A	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	102722505	rs4729868	G	A	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	102722516	rs4729869	T	C	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	102724372	rs4729871	A	T	7275.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr7	102738590	.	G	A	21	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=2;HapScore=2;MGOF=22;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=21;QD=27.8856062736;SC=TGGGTTTTCTGTGACAAAATT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=102738598;WS=102738580;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	102739043	rs4729879	C	T	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr7	102743893	rs3181009	C	T	82.94	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	102755330	rs4729882	A	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	102760511	rs12540583	A	C	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:104,139:0.57:243
chr7	102760722	rs1974715	A	G	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	102825871	rs4317507	T	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.48;QD=27.57;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	102825987	.	G	GA	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.111;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-1.598;QD=1.77;ReadPosRankSum=0.788;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:108,34:0.24:142
chr7	102874366	rs3987883	C	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	102883497	.	TA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=2.201;QD=1.26;ReadPosRankSum=0.308;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr7	102948040	rs11489600	T	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:121,57:0.32:178
chr7	103007949	rs4520097	A	C	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	103015123	.	G	GT	31.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=0.697;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr7	103018016	rs10273883	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	103019613	rs12705120	A	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	103033573	rs13240456	T	C	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	103118723	rs11340961	AT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.096;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.076;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr7	103138517	rs2711885	C	G	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr7	103138727	rs79694224	TAAAA	T	4544.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:40,113:0.74:153
chr7	103162370	rs10282605	C	T	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	103175965	rs362706	C	T	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	103191428	rs362721	C	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	103417134	rs262338	G	T	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.374;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr7	103417139	rs13243284	A	C	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.397;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:79,30:0.28:109
chr7	103417557	rs11496125	C	T	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.852;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:44,24:0.35:68
chr7	103557697	rs711443	A	G	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	103629803	.	T	TGCCGCC	4161.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.210;QD=43.81;ReadPosRankSum=0.753;SOR=0.523;set=HC	GT:AD:AF:DP	1/1:1,94:0.99:95
chr7	103824722	rs34556202	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr7	103824724	rs11384924	T	TA	498.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr7	103828665	rs34389841	C	CACAT	553.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr7	103835732	rs2307400	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	103838120	rs13238183	A	C	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=2.098;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr7	103844557	rs2245659	T	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr7	103969194	rs71794813	CAGGAGG	C,CAGG	2481.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=80;set=Intersection	GT:AF:DP	1/2:0.75,0.25:61
chr7	104110392	rs4727601	C	T	6999.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	104110406	rs6949376	C	G	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:158,78:0.33:236
chr7	104110492	rs6949536	C	T	2283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-0.164;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:183,121:0.40:304
chr7	104110657	rs6949602	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=1.163;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr7	104263404	rs1113933	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr7	104263425	rs1073012	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	104377453	rs4236573	A	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	104681214	rs10264273	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr7	104704314	rs7805792	G	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr7	104707360	rs12705297	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr7	104713915	rs999895	T	C	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	104715018	rs9641341	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr7	104717319	.	TTGTGTG	T,TTG	1468.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.75;QD=39.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,18,19:0.49,0.51:37
chr7	104717517	rs2240455	C	T	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:102,168:0.62:270
chr7	104742054	rs11976329	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr7	104745818	rs2299298	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr7	104746522	rs11340728	AT	A	644.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr7	104751419	rs2299299	C	T	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,86:0.68:126
chr7	104754047	rs35249094	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.293;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr7	104767295	rs3815256	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	104785779	rs7780887	T	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.975;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.037;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr7	104800890	rs35669504	C	CAA	1051.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr7	104800939	rs4730071	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr7	104808386	rs143276009	G	GA	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr7	104844416	rs34581245	CA	C	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=9.904;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.405;QD=6.22;ReadPosRankSum=-0.741;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:41,44:0.52:85
chr7	104844483	.	G	A	2642.77	.	AC=1;AF=0.500;AN=2;DP=209;set=Intersection	GT:AD:AF:DP	0/1:88,119:0.57:207
chr7	104845124	rs2237611	A	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr7	104845964	.	TCACACA	T	383.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=-0.000;DP=82;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.62;ReadPosRankSum=1.097;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr7	104845972	.	A	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=5.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.344;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr7	104846173	rs55712418	A	G	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:191,86:0.31:277
chr7	104846375	rs139433699	A	AAC	3793.73	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:409,160:0.28:569
chr7	105108969	.	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.350;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr7	105122891	rs57080279	TA	T	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.312;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr7	105142841	rs201599159	G	A	3443.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:95,149:0.61:244
chr7	105146593	rs11421080	A	AT	5450.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr7	105222738	rs57492756	A	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:101,73:0.42:174
chr7	105250905	rs940370	G	A	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	105254085	rs57819574	T	C	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	105516072	rs62482807	T	C	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	105516082	.	C	CCA	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=12.175;MLEAC=1;MLEAF=0.500;MQ=63.17;MQRankSum=1.876;QD=28.34;ReadPosRankSum=1.973;SOR=1.706;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr7	105621512	rs193795	G	T	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:163,98:0.38:261
chr7	105732429	rs176485	T	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr7	105733619	rs176486	G	A	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	105738368	rs12705333	T	C	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr7	105739732	rs176492	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:117,60:0.34:177
chr7	105752555	rs2240473	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	105752691	rs176501	G	A	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-0.204;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:49,28:0.36:77
chr7	105752820	rs176502	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:51,19:0.27:70
chr7	105903904	rs2302559	T	C	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:118,157:0.57:275
chr7	105904150	rs4730153	A	G	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:51,81:0.61:132
chr7	105909828	rs35479106	C	CT	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.320;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.615;QD=10.49;ReadPosRankSum=-0.591;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr7	105909890	rs2072457	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr7	105910666	rs6947766	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr7	106300604	.	G	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.635;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr7	106508978	rs849389	A	G	12939.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	106508987	rs849390	T	C	12795.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	106510076	rs1526083	A	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.503;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr7	106513011	rs1129293	C	T	5385.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:150,255:0.63:405
chr7	106519943	rs849370	T	C	6251.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	106685448	rs75385144	G	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:93,44:0.32:137
chr7	106768839	rs34736852	G	GAC	680.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,22:0.26:85
chr7	106781445	rs2302453	G	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr7	106786952	rs3729876	T	C	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr7	106787065	rs3729877	T	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr7	106799997	rs257376	G	A	7593.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:177,346:0.66:523
chr7	106826381	rs7794598	C	T	4637.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:100,210:0.68:310
chr7	106826439	rs7794965	G	A	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:40,90:0.69:130
chr7	106836195	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.425;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr7	106851754	rs1018946	T	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:36,61:0.63:97
chr7	106888867	rs35581984	G	A	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:275,118:0.30:393
chr7	106897037	rs17428126	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr7	106897237	rs17349904	A	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.226;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr7	106898870	.	T	TTCTC	674	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=22;MQ=60.05;NF=5;NR=53;PP=674;QD=11.6896551724;SC=AGAATGATAATTCTCTCTCTC;SbPval=0.38;Source=Platypus;TC=129;TCF=9;TCR=120;TR=58;WE=106898881;WS=106898860;set=Platypus	GT:AD:AF:DP	0/1:71,58:0.45:129
chr7	106898895	rs142552893	T	TCTCA	657.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:57,34:0.37:91
chr7	106965039	rs6466164	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	107002573	rs12536603	T	C	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:41,90:0.69:131
chr7	107002806	rs2269970	A	G	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:60,113:0.65:173
chr7	107053157	rs372240169	CA	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.849;QD=9.32;ReadPosRankSum=-0.556;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	107114400	rs11453718	A	AT	655.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	107167661	rs201626701	T	TA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.864;QD=1.43;ReadPosRankSum=0.661;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:73,24:0.25:97
chr7	107194911	rs2520270	C	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr7	107198405	rs2520272	A	T	2680.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:70,122:0.64:192
chr7	107207695	rs4730250	A	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:18,71:0.80:89
chr7	107208118	rs1468335	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr7	107208250	rs1468336	T	C	9658.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr7	107216738	rs10276604	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	107217068	rs3839819	TG	T	3103.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	107218033	rs711442	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr7	107255548	rs3801944	T	C	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr7	107301969	rs200483647	A	AG	577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.049;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:65,29:0.31:94
chr7	107303622	rs2248464	A	T	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.856;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	107303628	rs2248465	C	T	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=1.837;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	107344921	.	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=5.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-0.310;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:143,32:0.18:175
chr7	107384849	rs756872	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr7	107392891	rs10594774	CTG	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.509;QD=1.10;ReadPosRankSum=-1.113;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:116,17:0.13:133
chr7	107414419	rs41669	A	G	7328.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	107418805	.	CT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.168;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr7	107531832	rs11373214	G	GC	3206.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	107542662	rs10250718	T	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	107545799	rs10263341	T	C	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:53,97:0.65:150
chr7	107545910	rs61749952	A	T	3117.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:78,141:0.64:219
chr7	107546937	rs10281520	A	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr7	107564366	rs7561	T	G	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:84,162:0.66:246
chr7	107564539	rs3213673	G	A	2612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.80;ReadPosRankSum=0.360;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:60,79:0.57:139
chr7	107564542	rs3213674	G	T	2612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=-0.211;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:59,82:0.58:141
chr7	107580830	rs187768412	G	A	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.98;ReadPosRankSum=-0.802;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr7	107580839	rs2158836	A	G	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.92;ReadPosRankSum=-1.466;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,33:0.65:51
chr7	107593989	rs20556	T	C	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:48,74:0.61:122
chr7	107613379	rs2701034	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	107738801	.	A	ACATAGGGGTTGATGGACGCCCCCTCCCCGCCCTCCCACTATGGACTTACGCTGGCAGCC	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.536;QD=3.59;ReadPosRankSum=0.735;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:47,7:0.13:54
chr7	107738836	rs6974722	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=11.423;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.186;QD=1.22;ReadPosRankSum=-1.092;SOR=2.036;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr7	107738948	rs451252	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.073;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:66,15:0.19:81
chr7	107743409	rs401487	A	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr7	107743664	rs402113	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:63,26:0.29:89
chr7	107746214	rs430628	TG	GC	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;JOINED;set=Intersection	GT:AD:AF:DP	0/1:67,29:0.30:96
chr7	107746246	rs370495	T	C	1871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.172;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:103,52:0.34:155
chr7	107746253	rs420753	A	G	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=1.003;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:115,56:0.33:171
chr7	107747081	rs5886439	C	CT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=1.636;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr7	107747928	rs446800	A	C	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.118;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:101,39:0.28:140
chr7	107747937	rs401066	G	A	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=7.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.116;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:86,38:0.31:124
chr7	107748337	rs402264	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:69,38:0.36:107
chr7	107752470	rs369505	A	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.015;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr7	107752477	rs369508	A	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=1.274;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr7	107791018	rs443552	G	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	107800953	rs12670313	A	G	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	107808639	rs12537654	A	G	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	107815858	rs11983886	T	A	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr7	107818851	rs428459	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	107820911	rs414077	G	T	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	107822198	rs2839850	A	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	107822396	rs2142325	G	A	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	107824556	rs10561815	TTA	T	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;MQ=60.39;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr7	107824569	.	TA	T	509.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.436;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.727;QD=16.99;ReadPosRankSum=0.637;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr7	107824571	rs56697619	TA	T	509.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.436;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.727;QD=16.99;ReadPosRankSum=0.523;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr7	107824572	.	A	T	618	.	AC=2;AF=1.00;AN=2;BRF=0.08;FR=1.0000;HP=9;HapScore=1;MGOF=34;MMLQ=23;MQ=60.33;NF=16;NR=5;PP=618;QD=31.0843434546;SC=ATATATATATATTTTTTTTCC;SbPval=0.28;Source=Platypus;TC=30;TCF=25;TCR=5;TR=21;WE=107824580;WS=107824562;set=Platypus	GT:AD:AF:DP	1/1:9,21:0.70:30
chr7	107824678	rs6970656	A	G	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	107824889	rs401433	C	G	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	107825108	rs427909	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	107831520	rs6962066	T	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	107834613	rs6958498	G	C	10433.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr7	107834624	rs6978315	T	C	10041.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr7	107834734	rs404287	C	T	8993.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr7	107836062	rs34038577	A	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.20;ReadPosRankSum=0.312;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	107836064	rs34680676	G	GA	328.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.48;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	107836117	rs35825013	GT	G	1933.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	107838464	rs381318	G	T	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	107838637	rs388557	C	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	107849908	rs1269621	G	A	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:60,122:0.67:182
chr7	107872816	rs2072546	G	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr7	107874906	rs1269632	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	107875170	rs1269633	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	108131925	rs3214243	GA	G	1284.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,67:0.59:114
chr7	108137253	rs11448779	G	GA	4433.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	108142919	rs11971386	A	G	1846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=-0.107;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:30,87:0.74:117
chr7	108155991	rs3763460	T	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr7	108156050	rs40877	A	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	108212353	rs1043615	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:132,78:0.37:210
chr7	108213926	rs3763457	A	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.013;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr7	108524444	rs11397223	C	CA	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.281;QD=5.68;ReadPosRankSum=1.007;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:53,53:0.50:106
chr7	110764988	rs35553365	C	CA	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.693;QD=10.38;ReadPosRankSum=0.140;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr7	111368454	rs34597439	G	A	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:62,100:0.62:162
chr7	111372095	rs10953696	T	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	111372244	rs12705796	G	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.363;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr7	111376840	rs2301678	T	C	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	111379582	rs2074115	A	G	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-1.050;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:94,31:0.25:125
chr7	111379634	rs10246451	C	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	111379706	rs2074116	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr7	111382324	rs3757648	C	T	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	111386511	rs3832524	G	GT	1533.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:90,55:0.38:145
chr7	111400501	rs17158794	T	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.871;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr7	111407283	rs372483378	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.658;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.068;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr7	111423074	rs35825505	GA	G	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.073;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr7	111430386	.	G	A	200.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr7	111474749	rs3214145	TA	T	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.343;QD=3.54;ReadPosRankSum=0.881;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr7	111617088	rs3864649	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:91,61:0.40:152
chr7	111624522	rs2074127	TA	CG	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;JOINED;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr7	111629025	rs17401943	T	A	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:30,72:0.71:102
chr7	111629366	rs2074129	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.995;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=6.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.378;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr7	111634067	rs566714	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	111634368	rs847541	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr7	111634389	rs847542	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	111926896	.	CTT	C,CT	463.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.927;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.60;MQRankSum=0.472;QD=14.96;ReadPosRankSum=0.282;SOR=0.193;set=HC	GT:AD:AF:DP	1/2:2,14,15:0.45,0.48:31
chr7	111958382	rs4727766	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=1.800;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr7	112130009	rs11767398	A	C	5995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=6.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=-0.746;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:114,266:0.70:380
chr7	112575149	rs10231221	A	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	112724417	rs2256044	A	G	8716.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	112724525	rs1608890	A	G	12276.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr7	112724795	rs1575012	G	T	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:44,99:0.69:143
chr7	112757387	rs1051878	T	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr7	112758324	rs2462665	G	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=0.350;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr7	112758327	rs73198900	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr7	112758694	rs2250343	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr7	113091231	rs12705871	A	G	4160.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:132,191:0.59:323
chr7	113518502	rs2974938	A	T	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	113519719	rs2974944	A	T	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	113519796	rs2974942	C	T	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	114138751	rs2040658	G	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	114178279	rs78027924	T	A	339.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=-0.580;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr7	114210814	rs17137124	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:74,51:0.41:125
chr7	114270077	rs10227893	T	G	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:69,137:0.67:206
chr7	114293360	.	A	AT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=4.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.290;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:103,23:0.18:126
chr7	114293859	rs11765385	G	T	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,70:0.67:105
chr7	114296545	rs881732	A	C	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.804;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:215,75:0.26:290
chr7	114303491	rs34735973	A	AT	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.693;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr7	114303617	rs35518337	CT	C	1337.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.442;QD=14.23;ReadPosRankSum=0.421;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:9,85:0.90:94
chr7	114304563	rs1378771	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr7	114304630	rs1378772	A	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr7	114562833	rs35262508	G	GTT	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	114619598	rs2594449	C	A	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	115624478	rs35695387	C	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:135,66:0.33:201
chr7	115850675	rs11549785	C	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.283;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:60,30:0.33:90
chr7	115892386	.	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.297;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:184,37:0.17:221
chr7	116140076	rs2535220	T	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	116140275	rs11767363	T	C	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	116140508	rs3214317	CG	C	1004.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr7	116140524	rs2270188	G	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr7	116145957	rs4730743	A	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=11.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.085;SOR=0.058;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr7	116165158	rs200963614	T	TG	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.540;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr7	116165174	rs35182456	C	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-0.226;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr7	116165360	rs1997623	A	C	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	116165463	rs2742125	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	116336013	rs62469056	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr7	116364823	rs34822187	CA	C	290.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr7	116397572	rs13223756	A	G	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:31,93:0.75:124
chr7	116411818	rs35307741	C	T	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr7	116411990	rs56391007	C	T	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:75,147:0.66:222
chr7	116421967	rs6947629	T	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr7	116435768	rs41736	C	T	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.039;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:64,28:0.30:92
chr7	116436022	rs2023748	G	A	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:181,90:0.33:271
chr7	116436097	rs41737	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:131,68:0.34:199
chr7	116528240	rs4808	C	T	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=0.834;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:32,63:0.66:95
chr7	116533204	rs12706110	A	G	365.98	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr7	116550456	rs2074025	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	116557939	rs3173936	C	T	3856.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:65,160:0.71:225
chr7	116596461	rs117067537	C	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:103,42:0.29:145
chr7	116596697	rs6960131	A	G	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	116598735	rs6466595	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	116600049	rs10262671	A	T	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	116607172	rs35773173	CT	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.615;QD=3.83;ReadPosRankSum=-2.872;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr7	116607501	rs10259502	T	C	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	116608501	rs13243111	A	G	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:37,94:0.72:131
chr7	116660464	rs5886844	AC	A	2661.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	116660614	rs12706136	T	C	2597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-0.576;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:75,135:0.64:210
chr7	116660803	rs7788320	A	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr7	116770715	rs3808218	A	C	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:48,83:0.63:131
chr7	116778443	.	AT	A	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.771;QD=1.28;ReadPosRankSum=0.436;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr7	116811037	rs193562	T	C	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:117,52:0.31:169
chr7	116838311	rs193573	G	A	8695.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr7	116962933	rs34431449	T	TC	4382.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:73,161:0.69:234
chr7	117023237	rs10278953	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr7	117066718	rs7784156	C	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr7	117067040	rs10242827	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr7	117176815	rs79718042	T	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-0.241;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr7	117188660	.	ATG	A	1188.73	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chr7	117188681	.	TG	T	574	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=23;MQ=53.76;NF=18;NR=17;PP=574;QD=16.5428571429;SC=TGTGTGTGTGTGTTTTTTTAA;SbPval=0.34;Source=Platypus;TC=53;TCF=24;TCR=29;TR=35;WE=117188689;WS=117188665;set=Platypus	GT:AD:AF:DP	0/1:18,35:0.66:53
chr7	117188736	rs4727853	C	A	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.234;MLEAC=1;MLEAF=0.500;MQ=51.84;MQRankSum=-6.741;QD=7.20;ReadPosRankSum=-0.151;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:80,26:0.25:106
chr7	117188750	rs201880593	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.829;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.500;MQ=52.06;MQRankSum=-6.233;QD=2.14;ReadPosRankSum=2.457;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:82,23:0.22:105
chr7	117188797	rs201434579	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=52.73;MQRankSum=-6.517;QD=1.84;ReadPosRankSum=2.394;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr7	117199533	rs213950	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:44,68:0.61:112
chr7	117235055	rs1042077	T	G	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-1.541;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:25,39:0.61:64
chr7	117235196	rs4148712	CAT	C	64.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	117246636	rs35050470	G	A	201.78	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr7	117254527	rs213981	A	C	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr7	117307108	rs1800136	G	A	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:45,86:0.66:131
chr7	117361034	rs112341621	A	ATAAT	472.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr7	117824239	rs2896242	G	C	12999.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr7	117825549	rs9655829	T	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	117825681	rs45604739	A	G	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	117825834	rs2041527	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	117832138	rs1061731	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	117867960	rs60066163	C	CT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.454;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr7	117876264	rs10682157	A	ATGTGTG	217.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.260;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.157;QD=27.15;ReadPosRankSum=0.887;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr7	120380961	rs3834346	ATTTG	A	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.266;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr7	120428607	rs41622	G	A	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	120428799	rs41623	C	A	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	120450658	rs7805733	G	A	6257.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.86;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	120450678	rs112555207	T	TCA	2116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.360;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=18.57;ReadPosRankSum=-0.034;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:33,81:0.71:114
chr7	120590786	rs11408222	C	CG	122	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	120613419	rs2721369	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	120655676	rs4730984	G	T	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr7	120704289	rs2721375	C	T	9775.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr7	120739962	rs199844199	GTT	G,GT	4449.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.509;QD=20.89;ReadPosRankSum=-0.089;SOR=0.775;set=HC	GT:AD:AF:DP	1/2:15,160,38:0.75,0.18:213
chr7	120740103	rs798937	G	T	9118.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.787;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=9.070;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.172;QD=26.13;ReadPosRankSum=-1.180;SOR=0.043;set=HC	GT:AD:AF:DP	1/1:4,345:0.99:349
chr7	120740225	rs1917112	C	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	120764477	rs1524498	G	C	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr7	120764573	rs798948	C	A	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	120765954	rs798949	T	C	7009.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	120773954	rs61128227	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	120776097	rs41281692	C	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=28.34;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	120781884	rs11979314	G	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	120969769	rs2908004	G	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:58,96:0.62:154
chr7	120979089	rs2707466	C	T	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:73,132:0.64:205
chr7	120991489	rs11768996	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	121000021	rs3837124	A	AT	231.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr7	121000084	rs111415936	A	AAAGTTTT	1257.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr7	121002876	rs2536164	A	G	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=1.137;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:35,66:0.65:101
chr7	121002910	rs2536163	C	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr7	121011615	rs2536155	G	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	121080929	rs6961822	A	G	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	121081052	rs6962156	C	T	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	121081115	rs6466786	A	C	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	121081314	rs12706346	A	G	2220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-0.733;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:61,105:0.63:166
chr7	121160956	rs73225231	T	C	3627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=0.600;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:103,161:0.61:264
chr7	121164363	rs2896305	C	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	121513382	rs370737965	TCA	T,TCACA	472.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=24;set=Intersection	GT:AF:DP	1/1:0.82:17
chr7	121513561	rs740965	T	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:35,82:0.70:117
chr7	121617017	rs3817483	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	121653374	rs35947407	GTGA	G	13870.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	121653398	rs1147504	G	A	14722.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr7	121680783	rs72036963	CGTGTGTGT	C	406.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=36.98;SOR=3.020;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr7	121684718	rs1147487	A	G	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	121698827	rs1206381	A	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	121699151	.	ATT	A,AT	453.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.481;QD=14.64;ReadPosRankSum=-0.978;SOR=2.115;set=HC	GT:AD:AF:DP	1/2:4,13,14:0.42,0.45:31
chr7	121699789	.	CT	C	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.275;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:136,41:0.23:177
chr7	121719586	rs1206368	C	T	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	121719823	rs1206369	G	A	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	121732778	rs60690049	C	CA	768.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.005;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-0.017;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:6,44:0.88:50
chr7	121738926	rs34474265	T	TA	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=5.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=1.678;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr7	121758290	rs279677	G	C	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	121766611	.	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-1.315;SOR=0.279;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr7	121766638	rs2302338	A	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	121942832	rs10685687	G	GACA	11599.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	121942847	rs6968786	G	C	12777.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	121943212	.	T	C	3776.77	.	AC=1;AF=0.500;AN=2;DP=252;set=Intersection	GT:AD:AF:DP	0/1:83,168:0.67:251
chr7	121944527	rs11761299	T	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	121960407	rs1348442	T	G	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr7	121960438	rs1443749	C	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr7	121965437	rs17369598	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr7	121985541	rs798685	T	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr7	121985556	rs798684	C	G	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr7	122001142	rs143017876	A	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,6:0.19:31
chr7	122056232	.	A	AG	981.73	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr7	122194751	rs139130136	G	GA	2368.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr7	122303321	rs2251761	C	T	5860.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	122635024	rs860170	C	T	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr7	122769378	rs377408737	CTGTGTGTG	C	3615.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.330;QD=32.28;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:6,106:0.95:112
chr7	122774729	rs2470984	C	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr7	122809111	rs1880178	T	C	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	123142588	rs11770523	A	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	123150236	rs4276609	C	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	123256427	rs6962756	C	T	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:161,68:0.30:229
chr7	123269118	rs4731112	G	C	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:365,170:0.32:535
chr7	123269976	rs3993666	G	GGC	431.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr7	123295964	rs7779099	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr7	123324546	rs5887151	AAT	A	34.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:30,5:0.14:35
chr7	123329060	rs67743898	GTC	G	284.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=1.962;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr7	123329267	rs74521781	A	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr7	123336804	rs10270793	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,26:0.32:82
chr7	123360352	rs12674456	T	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=1.875;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:63,42:0.40:105
chr7	123594206	rs2285996	G	A	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:170,96:0.36:266
chr7	123594903	rs6972388	A	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.803;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.355;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr7	124387092	rs3735270	C	G	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:190,105:0.36:295
chr7	124387374	rs724356	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.812;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	124462661	rs17246404	C	T	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:192,81:0.30:273
chr7	124465256	rs146966778	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr7	124465509	rs10250202	A	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	124467470	rs10244817	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	124469267	rs10263573	A	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:24,78:0.76:102
chr7	124475296	rs142780416	TAAACA	T,TAAACAAAACA	4257.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=112;set=Intersection	GT:AF:DP	1/2:0.78,0.22:103
chr7	124477182	rs7787804	A	G	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	124481245	rs3815221	G	A	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:27,72:0.73:99
chr7	124486980	rs7794637	T	C	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	124499002	rs6977407	AT	CA	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr7	124533680	rs4377885	C	T	1807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=2.568;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:252,104:0.29:356
chr7	124533740	rs10954048	C	T	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=1.269;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:359,134:0.27:493
chr7	124540841	rs4383910	A	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr7	124540872	rs7782354	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.874;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr7	124540969	rs7782525	C	G	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-1.198;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:52,24:0.32:76
chr7	125588504	rs200819440	CAAGAAAGA	C	1552.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=39.81;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	125588526	rs10618111	GAAGA	G	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=27.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	125753485	rs1419526	C	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	125753551	rs1419527	A	G	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=45.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	125753556	rs5887285	A	AG	5806.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.33;SOR=1.521;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	125753603	rs1419528	A	G	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	125753636	rs1419529	A	G	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	125753737	rs4395830	A	C	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	126079144	rs712723	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:88,45:0.34:133
chr7	126410171	rs35648111	G	C	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr7	126544012	rs769199	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=9.727;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-7.487;QD=2.56;ReadPosRankSum=-0.109;SOR=2.412;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr7	126716306	rs1419447	G	A	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:56,90:0.62:146
chr7	127017391	rs17862368	A	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	127224193	rs3735643	A	G	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr7	127250907	rs712700	T	C	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	127251188	rs712701	T	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	127251792	rs327518	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	127252100	rs2233581	G	A	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:49,94:0.66:143
chr7	127253714	rs3835004	A	AG	1075.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	127254457	rs594141	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	127255285	rs698406	C	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	127255795	rs327516	C	G	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	127347733	rs11972774	G	C	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	127361269	rs918793	G	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	127637816	rs17151639	A	G	2256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=1.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.854;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:327,136:0.29:463
chr7	127669584	rs73238074	T	C	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:84,205:0.71:289
chr7	127669857	rs3823994	A	T	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:85,131:0.61:216
chr7	127714491	rs225241	G	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr7	127721507	rs322825	T	C	7012.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr7	127725711	rs59096474	G	A	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.243;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=7.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=0.975;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,53:0.71:75
chr7	127894350	rs28954111	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr7	127950725	rs12850	G	A	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	127957602	rs2290225	A	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	127973133	rs359650	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr7	127977304	rs11496082	C	T	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:28,101:0.78:129
chr7	127991133	rs891215	G	A	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:25,86:0.77:111
chr7	127992437	rs1651945	C	G	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	128000091	rs359642	G	A	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	128035152	rs28580600	G	A	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:386,214:0.36:600
chr7	128095876	rs2732393	A	G	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	128102508	.	C	CTCTT	46	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=26;MQ=56.38;NF=2;NR=1;PP=46;QD=27.0;SC=ACATATGGTGCTCTTGTGAGC;SbPval=0.13;Source=Platypus;TC=18;TCF=4;TCR=14;TR=3;WE=128102516;WS=128102498;set=Platypus	GT:AD:AF:DP	0/1:15,3:0.17:18
chr7	128133984	rs2562741	G	A	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	128137993	rs10245559	T	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr7	128140982	rs10257897	T	C	3628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-1.868;QD=15.25;ReadPosRankSum=2.537;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:71,167:0.70:238
chr7	128141083	rs10271878	A	G	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:54,128:0.70:182
chr7	128141136	rs3802007	T	G	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:34,71:0.68:105
chr7	128141865	rs1053124	T	C	5299.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:115,234:0.67:349
chr7	128142023	rs12539729	A	T	4315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.516;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.148;QD=21.26;ReadPosRankSum=-0.256;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:81,122:0.60:203
chr7	128142033	rs35586323	T	C	3990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.158;QD=23.34;ReadPosRankSum=0.019;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:69,102:0.60:171
chr7	128219018	rs199746388	AAAAAC	A	836.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.76;MQRankSum=-5.914;QD=17.08;ReadPosRankSum=2.064;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr7	128220111	rs139965573	G	T	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=52.38;MQRankSum=0.218;QD=5.55;ReadPosRankSum=0.438;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:97,46:0.32:143
chr7	128248198	rs201811442	G	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.39;MQRankSum=-0.925;QD=4.94;ReadPosRankSum=0.058;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:53,21:0.28:74
chr7	128298920	rs114191334	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr7	128312463	rs74343948	C	G	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr7	128315588	rs13308199	T	C	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	128315672	rs78302479	A	ATTC	4093.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.645;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:214,112:0.34:326
chr7	128315791	rs61738927	C	G	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:247,128:0.34:375
chr7	128315882	rs17169357	C	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.483;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:64,23:0.26:87
chr7	128317658	rs6467210	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr7	128317882	rs7797745	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr7	128318006	rs67602452	G	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr7	128319982	rs2290229	A	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.580;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr7	128322918	rs4554406	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr7	128323034	rs1109552	A	G	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:207,86:0.29:293
chr7	128364873	rs118150105	G	A	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:67,115:0.63:182
chr7	128388541	rs12538139	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr7	128388648	rs2290228	G	A	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:86,195:0.69:281
chr7	128394606	rs2307040	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:188,83:0.31:271
chr7	128399181	.	TTA	T	94.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr7	128399231	rs41274152	T	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr7	128409225	rs1043550	A	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:162,69:0.30:231
chr7	128413997	rs56762413	C	CT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.199;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr7	128414484	rs17397588	T	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr7	128415195	rs1799922	T	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:92,67:0.42:159
chr7	128415290	rs17476081	C	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr7	128415860	rs3807128	C	T	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:126,67:0.35:193
chr7	128450532	rs7799186	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr7	128451353	rs111409895	C	CAGAGAGCCTGGGA	2114.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,50:0.58:86
chr7	128455767	rs4728137	C	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	128487866	rs2249128	T	C	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	128527093	rs11982744	T	G	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:183,111:0.38:294
chr7	128531229	rs76872290	C	T	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:84,69:0.45:153
chr7	128533514	rs34061445	T	TC	4227.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	128548304	.	G	GAAGAAAGAAAGAAAGAAAGA	2220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=8.150;MLEAC=1;MLEAF=0.500;MQ=61.31;MQRankSum=3.993;QD=31.28;ReadPosRankSum=-0.515;SOR=2.690;set=HC	GT:AD:AF:DP	0/1:38,33:0.46:71
chr7	128550680	rs11335250	GC	G	2693.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	128553100	rs142966946	T	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr7	128587351	rs199508964	CACTCTGCAGCCGCCCACTCTGCGGCCGCCT	C	9137.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	128607384	rs8043	G	A	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	128610484	rs1691779	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	128630227	rs1154329	C	T	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	128630313	rs6969930	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	128640334	rs4728144	A	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	128641226	rs2305324	G	C	7221.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr7	128645292	rs11768572	A	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	128694976	rs2242028	C	T	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	128766505	rs6952057	A	C	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	128766528	rs10464697	G	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.85;QD=43.35;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	128766533	rs10464698	A	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.85;QD=43.67;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	128766553	rs6952077	A	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=26.56;SOR=4.351;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	128766770	.	AAAGACGATGACTTCG	A	3142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-2.653;QD=11.60;ReadPosRankSum=0.256;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:184,87:0.32:271
chr7	128766790	.	G	A	3241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.316;QD=12.86;ReadPosRankSum=0.710;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:162,90:0.36:252
chr7	128766794	.	T	C	3346.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.556;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.281;QD=13.02;ReadPosRankSum=0.638;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:164,93:0.36:257
chr7	128766795	.	CAGA	C	3376.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.735;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-3.445;QD=12.60;ReadPosRankSum=1.383;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:177,91:0.34:268
chr7	128766800	.	CTGGA	C	3223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-3.445;QD=12.03;ReadPosRankSum=1.480;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:177,91:0.34:268
chr7	128767410	rs10247566	A	G	15007.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr7	128767490	rs7809681	T	C	11162.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr7	128767506	rs7809687	T	G	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr7	128784723	rs13309419	A	G	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	128785008	rs13243618	C	T	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	128801555	rs149626402	C	T	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:39,92:0.70:131
chr7	128802936	rs919551	T	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	128804218	rs2566892	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	128807570	rs73230567	C	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr7	128843169	rs2566871	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.141;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr7	128845018	rs2703091	C	T	7827.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	128845277	rs2075777	G	C	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	128845325	rs2566872	G	A	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	128845907	rs2075779	T	C	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	128846328	rs2228617	G	C	8571.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr7	128846469	rs2735842	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	129015894	rs1559486	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:121,55:0.31:176
chr7	129019736	rs2303303	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr7	129019764	rs74831293	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	129029093	rs10954231	A	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	129040018	rs17552411	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr7	129049507	rs6467244	A	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	129091615	rs59179950	GA	G	485.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr7	129094195	rs581829	T	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	129098439	rs691124	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:60,25:0.29:85
chr7	129102743	rs34275118	A	G	4656.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:98,211:0.68:309
chr7	129125750	rs692625	G	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	129142694	rs691332	C	G	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr7	129142775	rs610591	G	A	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	129349101	rs11769146	G	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	129350170	rs3736626	A	C	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	129351444	rs1962038	C	G	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	129356939	rs12154342	T	G	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	129410144	rs4467881	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	129410195	rs4541843	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	129519555	rs62491504	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.326;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr7	129658655	rs2242488	A	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	129663496	rs11556924	C	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:97,47:0.33:144
chr7	129664312	rs1464890	T	C	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	129680994	rs34409527	A	ATG	1387.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:12,49:0.80:61
chr7	129736880	rs12531444	G	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:110,52:0.32:162
chr7	129764436	rs10268115	A	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr7	129806441	rs4507710	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	129825215	rs4731668	T	C	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	129841939	rs11375003	G	GA	944.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:5,47:0.90:52
chr7	129846823	.	T	TA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=1.197;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr7	129847482	rs2727837	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	129853233	rs13224721	T	C	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	129853251	rs6969994	T	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	129853461	rs118135439	G	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=13.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.746;SOR=1.482;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr7	129855837	rs4728190	C	T	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	129913516	.	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.694;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr7	129938598	rs34587586	G	T	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-1.313;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:184,104:0.36:288
chr7	129940561	rs12538292	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr7	129948013	rs1038628	G	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:116,65:0.36:181
chr7	129950740	rs2171492	G	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=1.285;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:117,37:0.24:154
chr7	129950879	rs901800	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=2.146;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr7	129962360	rs1569133	A	G	8144.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr7	129986226	rs6955991	T	A	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.325;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.45;ReadPosRankSum=-0.057;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr7	129986236	rs6955995	T	C	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.02;ReadPosRankSum=-0.531;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:15,33:0.69:48
chr7	129986338	rs6973851	C	T	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:68,147:0.68:215
chr7	129986521	rs6467306	T	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr7	129987734	rs71579248	G	T	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,72:0.69:104
chr7	129987764	rs12532645	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr7	129989878	rs7808823	T	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr7	130002317	rs1544705	T	C	7767.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr7	130020569	rs7790688	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr7	130021488	rs1126899	G	C	6266.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:125,262:0.68:387
chr7	130024308	rs3043750	A	AC	1344.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr7	130025895	rs2239606	A	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr7	130080812	rs2287371	T	G	7075.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:182,321:0.64:503
chr7	130136107	rs3807348	G	A	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	130136902	rs2072573	G	T	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	130138155	rs6968284	A	G	10694.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr7	130139660	.	T	TA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.071;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:77,24:0.24:101
chr7	130140766	rs765205	C	A	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	130147307	rs2302826	T	G	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	130147427	.	G	GT	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.386;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr7	130148507	rs2072575	G	A	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	130148562	rs58927323	T	TTCTTAGGAAGTG	2334.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	130148903	rs12706941	A	G	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	130149061	rs12706942	G	C	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	130150705	rs12706944	G	A	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	130288598	.	CA	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.115;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:47,27:0.36:74
chr7	130289774	rs138551934	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.363;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.063;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	130292531	rs12706946	T	C	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	130292802	rs35780462	C	T	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:132,67:0.34:199
chr7	130297119	rs34699820	GA	G	4265.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:22,220:0.91:242
chr7	130298550	rs4731696	C	T	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	130354106	rs10232683	G	C	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	130356691	.	CTTTAT	C	346	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=3;HapScore=2;MGOF=0;MMLQ=23;MQ=61.69;NF=1;NR=7;PP=346;QD=44.375;SC=GAACTATTCACTTTATTTTAT;SbPval=0.67;Source=Platypus;TC=15;TCF=2;TCR=13;TR=8;WE=130356703;WS=130356681;set=Platypus	GT:AD:AF:DP	1/1:7,8:0.53:15
chr7	130418525	rs76603546	G	A	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	130418720	rs111359117	A	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	130418883	.	C	CGAGCGCCGTCCGAACGCGGCCGGCCGCGGGCGACGGAGTTCCCGGGAGCGTCCGTCCCGCAGCCTCG	705.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.41;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	131060277	rs3823557	G	A	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=1.270;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:79,51:0.39:130
chr7	131155586	rs3213820	G	C	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-0.257;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,42:0.71:59
chr7	131155586	.	GTG	CTT	463	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=21;MQ=60.0;NF=19;NR=15;PP=463;QD=15.1902316136;SC=AATTATCCTTGTGTACATTTT;SbPval=0.29;Source=Platypus;TC=52;TCF=33;TCR=19;TR=34;WE=131155596;WS=131155576;set=Platypus	GT:AD:AF:DP	1/0:18,34:0.65:52
chr7	131155588	rs1733861	G	T	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.22;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	131155764	rs1684172	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	131163354	rs10701186	C	CTT	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.825;QD=14.68;ReadPosRankSum=0.897;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr7	131190554	rs7799613	C	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr7	131190696	rs6651125	T	C	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=4.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.739;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:77,102:0.57:179
chr7	131191536	rs3212303	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr7	131191554	rs56231781	TC	T	404.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	131191609	rs11770771	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	131193695	rs3212299	C	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr7	131193739	rs3212298	C	T	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr7	131195535	rs3847113	G	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	131195712	rs12670788	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:129,56:0.30:185
chr7	131195959	rs3735035	C	T	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:189,100:0.35:289
chr7	131241029	rs11277659	GGGCGAC	G	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.383;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.597;SOR=1.582;set=HC	GT:AD:AF:DP	0/1:52,10:0.16:62
chr7	131241085	rs7780021	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:60,22:0.27:82
chr7	131815118	rs10954359	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	131815220	rs10954360	G	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:32,80:0.71:112
chr7	131815310	rs2671103	A	G	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:67,99:0.60:166
chr7	131815343	rs10954361	G	A	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:60,91:0.60:151
chr7	131832627	rs1450882	A	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	131849204	rs896167	T	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr7	131849981	rs17166207	A	G	2268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.577;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=-0.508;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:42,98:0.70:140
chr7	131852984	rs7777156	C	T	2999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.972;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.78;ReadPosRankSum=-0.428;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:34,74:0.69:108
chr7	131852989	rs59200081	G	C	3007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.166;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.34;ReadPosRankSum=-0.984;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:34,76:0.69:110
chr7	131859496	rs7808586	G	A	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	131864591	rs3734989	T	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	131866817	rs3734985	A	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr7	131866833	rs3734984	A	G	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,71:0.65:109
chr7	131866972	rs3734983	A	G	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:113,77:0.41:190
chr7	131888058	rs143605398	TGCTAGGCCCCAGCC	T	1934.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=13.246;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.729;QD=26.50;ReadPosRankSum=-1.012;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:24,49:0.67:73
chr7	131908468	rs2290232	T	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	131908566	rs2290233	A	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	131915507	rs1868781	A	G	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	131926112	rs3925378	C	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	132070054	rs741664	T	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:130,56:0.30:186
chr7	132409606	rs594208	T	C	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr7	132766584	rs11769814	C	G	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	132990536	rs5887620	C	CT	889.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	133682181	rs3735050	T	C	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:62,173:0.74:235
chr7	133749164	rs6953296	G	A	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	133821619	rs13246630	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	133821642	rs73454662	T	G	242.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr7	133824117	rs724812	G	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr7	133868368	rs1222420	C	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	133868507	rs1222419	C	T	6819.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	133881919	rs10611703	ATG	A	1280.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.14;QD=33.70;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	133883866	rs147394550	A	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr7	134133291	rs2734653	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:21,66:0.76:87
chr7	134134338	rs71531826	CA	C	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-1.598;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr7	134135751	rs2734649	C	T	5816.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:149,258:0.63:407
chr7	134136584	rs1732035	A	C	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	134217729	rs3735041	A	G	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr7	134223127	rs4732035	T	C	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr7	134225788	rs4732036	C	T	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:44,106:0.71:150
chr7	134225827	rs4728329	A	G	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:13,56:0.81:69
chr7	134552634	rs1452911	G	A	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:51,94:0.65:145
chr7	134576441	rs6953822	T	C	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	134576547	rs12531510	A	G	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	134612759	rs11438725	G	GT	2568.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	134618710	rs6973420	A	G	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	134626034	.	G	GAA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.991;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr7	134673958	rs12671813	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.89;ReadPosRankSum=-0.191;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr7	134678253	rs2348049	T	A	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:73,110:0.60:183
chr7	134678463	rs12540686	T	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr7	134678523	rs2252826	C	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	134694773	rs34139471	CT	C	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-0.698;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:10,28:0.74:38
chr7	134694888	rs146090775	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.58;ReadPosRankSum=-1.103;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr7	134694939	rs6958457	T	C	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	134701856	rs4236655	G	C	10037.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr7	134719551	rs9656447	C	G	7974.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	134730151	rs2348054	G	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	134730441	rs2348055	A	G	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	134744060	rs146909058	CA	C	520.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr7	134765148	rs10215144	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr7	134779347	rs181226435	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=1.628;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr7	134813853	rs2348282	G	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:137,63:0.32:200
chr7	134833056	rs3735002	C	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr7	134849213	rs3800592	G	A	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:119,76:0.39:195
chr7	134849280	rs292501	T	A	11065.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr7	134849577	rs2288237	A	C	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.500;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:177,70:0.28:247
chr7	134852399	rs2288238	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr7	134852420	rs138841490	CA	C	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	134852432	rs292505	C	T	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	134853844	rs9649052	C	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr7	134871775	rs292557	C	T	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-1.427;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:78,48:0.38:126
chr7	134872003	rs292558	C	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	134873355	rs292564	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:129,57:0.31:186
chr7	134877935	rs292573	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr7	134878237	rs2278128	G	C	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr7	134879830	rs292575	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.603;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr7	134880884	rs292578	G	C	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=5.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=2.230;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:198,91:0.31:289
chr7	134882680	rs292582	A	G	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	134882693	rs292583	T	C	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	134889141	rs292592	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:110,53:0.33:163
chr7	134890855	rs292593	T	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.819;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr7	134891961	rs2278130	G	A	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:108,182:0.63:290
chr7	134895532	rs292601	T	C	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:220,120:0.35:340
chr7	134896383	rs292602	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	134925241	rs34330846	C	CA	3946.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:27,203:0.88:230
chr7	134925411	rs7805859	G	A	10884.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr7	134928033	rs62481958	G	T	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	134930169	rs113633449	A	AGAG	4018.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.99;MQRankSum=0.752;QD=27.72;ReadPosRankSum=-0.230;SOR=0.461;set=HC	GT:AD:AF:DP	1/1:2,143:0.99:145
chr7	134939767	rs17168332	G	T	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,54:0.69:78
chr7	134943057	rs11979450	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr7	134943087	rs11979453	C	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr7	134943116	rs11979480	C	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr7	134943328	rs58802664	C	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr7	134962043	rs10239950	C	G	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	134968479	rs11762990	A	C	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=5.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-2.228;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:255,95:0.27:350
chr7	135047703	rs6969632	T	C	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	135048033	rs2059367	G	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr7	135048804	rs3812265	C	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-2.119;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:139,65:0.32:204
chr7	135082751	rs3812281	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.74;ReadPosRankSum=-0.205;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	135095270	rs2696877	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	135242747	rs117892953	T	C	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.801;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:153,58:0.27:211
chr7	135242910	rs6961420	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr7	135272535	rs35616673	C	CT	527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.786;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.627;QD=4.29;ReadPosRankSum=-0.671;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:83,40:0.33:123
chr7	135285788	rs4296989	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	135291001	rs73725182	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr7	135304273	rs7810767	G	C	3914.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	135311120	rs7810260	G	A	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:45,81:0.64:126
chr7	135311164	rs113302711	G	GA	1182.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr7	135311167	rs10234309	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr7	135312572	rs4073627	G	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	135315054	rs10690915	C	CCT	3265.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:48,84:0.64:132
chr7	135322853	rs7799891	T	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr7	135323576	rs6948382	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr7	135327853	rs73725437	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr7	135328168	rs138585928	A	ACTGGT	1524.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr7	135329690	rs12540688	T	C	5645.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:120,251:0.68:371
chr7	135330410	rs148753323	GT	G	608.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr7	135357476	rs3110823	A	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:72,27:0.27:99
chr7	135387473	rs3112345	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.606;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr7	135387495	rs3112346	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,29:0.30:96
chr7	135387656	rs3112347	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:72,37:0.34:109
chr7	135391084	rs373822143	G	A	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:65,152:0.70:217
chr7	135392876	rs3110800	T	C	1766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.596;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:281,107:0.28:388
chr7	135412273	rs3112369	T	C	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:143,79:0.36:222
chr7	136587843	rs10488598	T	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr7	136588109	rs6963819	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	136912903	rs11505752	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr7	136921062	rs322295	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr7	136938111	.	T	G	70.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr7	136939582	rs1162122	G	T	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	137076100	.	G	GA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=4.489;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.075;QD=0.92;ReadPosRankSum=1.261;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:104,27:0.21:131
chr7	137082039	rs2241443	T	C	372.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.60;ReadPosRankSum=1.702;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr7	137092745	rs3217275	CA	C	2385.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:48,81:0.63:129
chr7	137092781	rs7800454	T	C	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr7	137097086	rs1731959	G	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	137154572	rs2293546	T	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	137270235	rs76726564	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr7	137284480	rs706568	T	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:127,47:0.27:174
chr7	137304765	.	G	GCA	231.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.04;MQRankSum=0.404;QD=21.09;ReadPosRankSum=1.747;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr7	137374777	rs145453298	A	AACAAAG	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.409;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr7	137531147	rs71815938	GT	G	14372.73	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr7	137590369	rs273968	G	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	137600690	rs273957	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	137607183	.	CGT	C	514	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=1;HapScore=3;MGOF=45;MMLQ=28;MQ=53.95;NF=10;NR=0;PP=514;QD=55.7;SC=TATATATATACGTATATATAT;SbPval=1.0;Source=Platypus;TC=12;TCF=12;TCR=0;TR=10;WE=137607195;WS=137607182;set=Platypus	GT:AD:AF:DP	1/1:2,10:0.83:12
chr7	137607187	.	T	C	330	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=3;MGOF=45;MMLQ=28;MQ=54.68;NF=13;NR=0;PP=330;QD=28.0593240421;SC=TATATACGTATATATATATAT;SbPval=1.0;Source=Platypus;TC=21;TCF=21;TCR=0;TR=13;WE=137607195;WS=137607182;set=Platypus	GT:AD:AF:DP	1/1:8,13:0.62:21
chr7	137607217	.	C	T	686	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5001;HP=2;HapScore=1;MGOF=16;MMLQ=24;MQ=57.48;NF=30;NR=5;PP=686;QD=20.5934632156;SC=TATATATATACACACATATAT;SbPval=0.62;Source=Platypus;TC=39;TCF=33;TCR=6;TR=35;WE=137607241;WS=137607205;set=Platypus	GT:AD:AF:DP	0/1:4,35:0.90:39
chr7	137607233	.	C	T	938	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=16;MMLQ=23;MQ=58.18;NF=38;NR=10;PP=938;QD=20.2660669281;SC=TATATATATACACACACACAC;SbPval=0.49;Source=Platypus;TC=55;TCF=44;TCR=11;TR=48;WE=137607241;WS=137607205;set=Platypus	GT:AD:AF:DP	1/1:7,48:0.87:55
chr7	137612913	rs66593747	CTGG	C	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	137641123	rs274003	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	137642759	rs274004	T	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr7	137686297	rs72580571	GACA	G	1686.73	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:254,103:0.29:357
chr7	137773291	rs2120846	T	G	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:160,93:0.37:253
chr7	137773563	rs2166188	T	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr7	137776411	rs202194493	C	CA	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=7.022;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.193;QD=4.31;ReadPosRankSum=-0.296;SOR=2.022;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr7	137776481	rs6943935	C	T	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.787;QD=7.53;ReadPosRankSum=0.993;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:76,49:0.39:125
chr7	137782593	rs200250280	CTT	C,CT	628.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=20.96;SOR=0.922;set=HC	GT:AD:AF:DP	1/2:0,19,11:0.63,0.37:30
chr7	137798426	rs17169518	G	A	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:100,59:0.37:159
chr7	137798593	rs2306847	A	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:69,63:0.48:132
chr7	137801413	rs1872929	A	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=7.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-0.240;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:79,29:0.27:108
chr7	137801444	rs1872930	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:74,31:0.30:105
chr7	138270657	rs1673203	G	A	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	138279228	rs1439793	A	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	138281355	rs1659832	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	138281906	rs1659831	T	C	6640.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr7	138310871	rs78781602	A	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	138312122	rs2305816	A	C	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:80,108:0.57:188
chr7	138312350	rs80223219	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr7	138333933	rs58569190	GA	G	1098.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:5,57:0.92:62
chr7	138356659	rs5887893	AG	A	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	138356662	rs5011821	G	A	1133.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	138356663	rs5011820	G	C	1133.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	138356664	rs5887894	C	CA	1124.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	138356722	rs10234595	C	T	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=0.406;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr7	138356730	rs202122915	T	TG	3447.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	138356732	.	CTG	GCT	819	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=1;MGOF=33;MMLQ=28;MQ=60.0;NF=48;NR=10;PP=819;QD=15.2149633597;SC=CCCTCAGTTGCTGTGTTCACG;SbPval=0.83;Source=Platypus;TC=69;TCF=53;TCR=16;TR=58;WE=138356742;WS=138356712;set=Platypus	GT:AD:AF:DP	1/1:11,58:0.84:69
chr7	138356733	rs5887896	TG	T	3447.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=2.272;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	138363767	rs10250576	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr7	138363896	rs12535253	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr7	138391554	rs73166921	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr7	138394695	rs141195167	G	GCAAT	511.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr7	138417596	rs148944306	T	TA	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=1.317;SOR=2.468;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr7	138417718	rs3807154	A	G	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	138418910	rs1026435	G	A	11006.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr7	138419085	rs1037692	A	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	138429823	rs55843107	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	138453892	rs200396435	GAAA	G,GA	1490.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.785;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.949;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.87;ReadPosRankSum=2.530;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:16,22,41:0.28,0.52:79
chr7	138455988	rs10258719	A	G	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	138485954	rs6945259	G	T	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	138486096	rs61729750	G	C	11852.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr7	138583840	rs7802841	C	A	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	138595835	rs11379929	T	TA	2325.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:11,118:0.91:129
chr7	138596001	rs16873582	G	A	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:60,161:0.73:221
chr7	138596064	rs6969074	G	A	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	138601826	rs2251220	G	A	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:91,139:0.60:230
chr7	138603282	rs59985563	T	C	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-2.520;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:122,40:0.25:162
chr7	138707177	rs10249949	G	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=2.256;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr7	138713715	rs11767739	G	C	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:51,134:0.72:185
chr7	138719194	rs10713373	AG	A	730.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr7	138719231	rs7810237	T	C	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-1.140;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:37,40:0.52:77
chr7	138732274	rs3087999	C	G	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:60,115:0.66:175
chr7	138732457	rs3735008	G	A	4857.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:128,208:0.62:336
chr7	138732497	rs3735007	G	A	4321.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:129,192:0.60:321
chr7	138738573	rs11436095	G	GAA	238.74	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.26;QD=23.87;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	138739816	rs10261597	C	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	138740037	rs2297236	G	C	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	138740186	rs2297237	A	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	138740195	rs2297238	T	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.80;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	138740224	rs2297239	T	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	138740240	rs2297240	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	138853315	.	C	CA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=11.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.101;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr7	139026152	rs10265	T	G	3464.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:75,152:0.67:227
chr7	139077240	rs4732370	C	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr7	139077317	rs4732371	T	A	314.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr7	139097282	rs11409457	A	AC	635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=0.280;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:49,46:0.48:95
chr7	139102490	rs3778931	A	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr7	139138551	rs10954649	C	T	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	139138871	rs11763327	T	G	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	139138950	rs17160911	C	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr7	139167934	rs1860150	T	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.402;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:89,38:0.30:127
chr7	139168063	rs12707447	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:71,30:0.30:101
chr7	139224992	rs34334721	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-1.653;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr7	139415775	rs7456421	G	C	3399.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:79,149:0.65:228
chr7	139478085	rs2254854	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr7	139478175	rs1860509	T	G	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=1.021;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,46:0.59:78
chr7	139613072	rs6464448	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.223;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:75,29:0.28:104
chr7	139653196	rs5768	A	C	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:211,106:0.33:317
chr7	139724169	rs13760	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	139724358	rs2269996	G	A	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	139724555	rs3735352	C	T	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr7	139724742	rs3735351	G	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr7	139726207	rs2286198	G	A	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	139727135	rs2286196	G	A	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	139728584	rs2286195	A	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	139746633	.	T	TGTCA,TGTGTGTCA,TGTGTCA	4497.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=123;set=Intersection	GT:AF:DP	1/2:0.17,0.79:72
chr7	139754451	rs2362460	T	C	10000.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	139757980	rs11979771	T	C	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr7	139762273	rs737321	A	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-1.367;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr7	139762282	rs6945590	A	G	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-1.519;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr7	140036999	rs4332050	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.115;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr7	140037053	rs11331602	CT	C	432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-1.083;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:33,32:0.49:65
chr7	140043373	rs11772729	T	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.527;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:75,28:0.27:103
chr7	140044979	rs6974016	C	T	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:162,60:0.27:222
chr7	140048262	rs66700092	CT	C	556.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=0.304;SOR=1.478;set=HC	GT:AD:AF:DP	1/1:5,38:0.88:43
chr7	140051063	rs12703774	C	T	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	140051091	rs12703775	G	A	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr7	140051848	rs12665885	C	T	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr7	140069361	rs4448174	G	C	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	140080087	rs62490396	C	G	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	140082363	rs6968618	G	A	6658.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	140110677	rs2971690	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:98,46:0.32:144
chr7	140111509	rs2971688	G	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr7	140173010	rs58539466	C	CA	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.997;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.182;QD=1.68;ReadPosRankSum=-1.313;SOR=1.235;set=HC	GT:AD:AF:DP	0/1:115,36:0.24:151
chr7	140218464	rs6852	C	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=1.145;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:122,45:0.27:167
chr7	140225750	rs2252397	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr7	140244560	rs2293177	C	T	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	140244627	rs2293176	G	A	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	140255657	rs11763409	C	T	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	140257841	rs10252031	A	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	140267100	rs201845097	GAGAA	G	170.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.93;ReadPosRankSum=-2.200;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	140269625	rs587373	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	140301731	rs269243	G	T	20330.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,740:1.00:740
chr7	140395554	.	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=1.408;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:103,21:0.17:124
chr7	140396472	rs57717083	C	CG	899.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	140397792	rs1267673	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr7	140404562	.	G	GT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.493;QD=2.09;ReadPosRankSum=-1.460;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr7	140426257	rs3829814	A	G	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:67,89:0.57:156
chr7	140434597	.	G	GAA	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.454;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.158;QD=20.79;ReadPosRankSum=2.324;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr7	140508151	.	CAAA	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.132;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr7	140702199	rs10654746	C	CTT	665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.850;QD=8.76;ReadPosRankSum=0.836;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:31,45:0.59:76
chr7	140774467	rs477223	C	G	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr7	141137460	rs13233459	C	T	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	141137554	rs1727491	A	G	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	141137554	.	ACG	GCA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=10;MMLQ=26;MQ=60.0;NF=56;NR=52;PP=2947;QD=20;SC=AGGTAAGGCTACGGGCTCGGC;SbPval=0.5;Source=Platypus;TC=112;TCF=59;TCR=53;TR=108;WE=141137564;WS=141137544;set=Platypus	GT:AD:AF:DP	1/1:4,108:0.96:112
chr7	141137556	rs1619668	G	A	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	141362431	rs6949729	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr7	141374030	.	AAC	A	35.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr7	141386414	rs371102397	C	A	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.404;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:213,80:0.27:293
chr7	141420707	rs6971275	T	C	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	141420768	rs6967301	A	G	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr7	141429224	rs35399772	TC	T	2380.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;MQ=60.45;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	141429515	rs6962507	G	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	141536351	rs370442337	CAG	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.597;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:113,16:0.12:129
chr7	141538812	rs36029840	TA	T	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=1.570;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr7	141635538	rs5888023	C	CA	2811.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	141672705	rs1726866	G	A	7121.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	141705515	rs1285964	A	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr7	141705540	rs1285965	A	C	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.058;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr7	141708625	rs1465093	A	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr7	141720643	rs1852508	T	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr7	141727679	rs34441915	AT	A	123.74	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr7	141730618	rs111279755	CTG	C	1221.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr7	141731340	rs4374898	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr7	141733994	rs10693852	T	TTG	1678.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr7	141736249	rs13245455	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr7	141738504	rs8180874	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:82,31:0.27:113
chr7	141740077	rs2960753	G	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr7	141740409	rs10215116	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr7	141747658	rs2960746	A	G	9020.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr7	141750316	rs6948116	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=0.123;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr7	141750472	rs62477572	A	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:104,59:0.36:163
chr7	141752006	rs71166554	AT	A	2273.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr7	141752213	rs2961085	C	A	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	141752857	.	C	T	4208.77	.	AC=1;AF=0.500;AN=2;DP=273;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:91,179:0.66:270
chr7	141755795	rs2961081	C	T	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	141755987	rs2961080	G	T	7711.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr7	141759274	rs2960758	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.43;QD=29.84;SOR=1.791;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	141759340	rs2961074	T	C	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	141760293	rs2961073	TG	GC	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	141785567	.	C	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-7.492;QD=1.50;ReadPosRankSum=-0.956;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:54,9:0.14:63
chr7	141794263	rs3087322	A	G	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.56;QD=25.83;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	141794763	rs138070479	ATT	A	1480.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=5.936;MLEAC=2;MLEAF=1.000;MQ=60.74;MQRankSum=0.426;QD=25.10;ReadPosRankSum=1.122;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:4,55:0.93:59
chr7	141794790	rs4259331	A	G	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	141796048	rs7807614	G	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	141796081	rs7807635	G	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.83;QD=27.45;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	141796250	rs6976953	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	141796289	rs36061384	C	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	141805522	rs36052135	G	A	8778.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr7	141819908	rs78877860	G	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr7	141831170	rs12154281	G	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr7	141831236	.	C	CAAAACA	5586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=3.653;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.751;QD=28.65;ReadPosRankSum=0.032;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:69,126:0.65:195
chr7	141831661	rs4473940	A	G	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr7	141838362	rs6464465	C	G	3994.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:111,172:0.61:283
chr7	141840581	rs73158439	T	C	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:63,126:0.67:189
chr7	141844888	rs12154456	C	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,30:0.33:91
chr7	141854436	rs61281471	A	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.673;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr7	141854659	rs11770705	A	G	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-1.060;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:93,56:0.38:149
chr7	141857846	rs7811706	A	G	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	141857985	rs10282156	A	G	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:83,175:0.68:258
chr7	141860199	rs60403744	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.806;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr7	141860861	rs34106041	T	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.966;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr7	141861072	rs12703440	C	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr7	141885944	rs111646116	CT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.892;QD=0.77;ReadPosRankSum=-1.034;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr7	141896059	rs4236467	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	141897595	rs3110843	T	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	141898023	rs4260813	C	A	6424.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	141898522	rs2960768	T	A	5744.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	141898680	rs2961065	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	141899660	rs11402165	C	CT	1246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-1.018;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:24,79:0.77:103
chr7	141901322	rs6963175	G	A	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	141901506	rs6464469	C	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	141957653	rs35443843	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	142001030	rs56095598	A	G	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	142008403	rs376053846	C	G	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.160;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.786;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr7	142008408	rs370407588	T	G	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.721;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=0.771;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:69,27:0.28:96
chr7	142008434	.	G	A	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.417;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:108,46:0.30:154
chr7	142008440	.	T	C	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=0.039;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:118,48:0.29:166
chr7	142008442	.	T	C	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-0.543;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:119,51:0.30:170
chr7	142008453	.	C	G	2195.77	.	AC=1;AF=0.500;AN=2;DP=200;set=Intersection	GT:AD:AF:DP	0/1:137,63:0.32:200
chr7	142008469	.	C	T	2747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.802;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=-1.216;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:149,74:0.33:223
chr7	142008477	.	G	A	2818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-0.238;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:164,78:0.32:242
chr7	142008484	.	T	A	2905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=1.338;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:185,79:0.30:264
chr7	142008491	.	A	G	3055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=1.839;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:214,88:0.29:302
chr7	142008502	rs370591069	TA	CG	3671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.427;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.613;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:230,104:0.31:334
chr7	142008529	rs367608484	C	G	3938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.742;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:248,114:0.31:362
chr7	142008533	.	CCG	C	4011.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.885;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=1.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=1.025;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:252,111:0.31:363
chr7	142008536	.	T	TAC	3925.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.854;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:246,111:0.31:357
chr7	142008542	rs373709044	A	G	3975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=0.361;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:250,116:0.32:366
chr7	142008573	rs375153223	G	A	3938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.342;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:243,113:0.32:356
chr7	142008577	rs369645839	G	A	3975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.281;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-0.212;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:241,112:0.32:353
chr7	142008581	rs371566486	CT	AC	3959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-0.138;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:242,111:0.31:353
chr7	142008593	rs368999058	T	C	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:225,107:0.32:332
chr7	142008634	.	ACG	A	2486.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.361;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=0.685;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:178,72:0.29:250
chr7	142008638	.	C	A	2543.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.178;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-0.528;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:168,72:0.30:240
chr7	142008639	.	A	AGG	2546.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.837;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-0.764;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:162,71:0.30:233
chr7	142008644	.	CA	TC	2471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.533;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-0.479;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:155,70:0.31:225
chr7	142008653	rs370721246	T	A	2208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.864;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=0.253;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:159,67:0.30:226
chr7	142008672	.	G	A	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=1.105;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:152,63:0.29:215
chr7	142008675	rs376217909	A	G	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=1.384;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:149,61:0.29:210
chr7	142008718	.	T	C	2014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.828;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=1.289;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:134,57:0.30:191
chr7	142008727	.	G	T	2114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=3.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.292;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:121,60:0.33:181
chr7	142008733	.	A	G	2285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=5.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-0.753;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:118,60:0.34:178
chr7	142008737	.	T	C	2519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.136;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-0.971;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:126,65:0.34:191
chr7	142008745	.	TC	CA	2490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=2.563;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-1.105;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:131,69:0.34:200
chr7	142008750	.	A	T	2446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.247;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-1.001;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:133,69:0.34:202
chr7	142008783	.	A	G	2699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=1.574;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:169,78:0.32:247
chr7	142008785	.	A	C	2699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=1.653;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:169,78:0.32:247
chr7	142008799	rs17236	C	T	2811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=1.952;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:167,80:0.32:247
chr7	142008803	.	C	T	2730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=2.233;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:165,78:0.32:243
chr7	142008879	.	C	T	1694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=10.59;ReadPosRankSum=0.700;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:111,49:0.31:160
chr7	142008881	.	G	A	1691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.706;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.564;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:109,49:0.31:158
chr7	142008884	.	A	G	1691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=11.06;ReadPosRankSum=1.067;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:107,46:0.30:153
chr7	142008887	.	T	C	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=10.21;ReadPosRankSum=1.188;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:106,45:0.30:151
chr7	142008932	rs375535167	GC	G	714.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr7	142008934	.	A	T	723.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.288;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.189;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:54,22:0.29:76
chr7	142008939	.	A	C	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.962;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-0.327;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr7	142008941	.	C	T	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.710;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr7	142008959	.	G	A	269.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:45,15:0.25:60
chr7	142013384	rs361401	G	C	14262.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr7	142028092	.	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=3.404;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-7.112;QD=3.65;ReadPosRankSum=-0.052;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr7	142028106	.	C	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=11.336;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-7.713;QD=0.71;ReadPosRankSum=0.835;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:65,7:0.10:72
chr7	142028108	rs361428	A	C	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.50;QD=46.59;SOR=1.997;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	142028118	rs361429	C	A	3296.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.886;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=13.224;MLEAC=2;MLEAF=1.000;MQ=59.10;MQRankSum=8.770;QD=35.07;ReadPosRankSum=-1.248;SOR=2.180;set=HC	GT:AD:AF:DP	1/1:6,88:0.94:94
chr7	142028462	.	T	C	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DP=489;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-20.912;QD=2.34;ReadPosRankSum=-7.198;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:431,57:0.12:488
chr7	142028472	.	C	T	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;ClippingRankSum=0.000;DP=510;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-21.018;QD=2.51;ReadPosRankSum=-4.440;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:447,62:0.12:509
chr7	142028474	.	TC	GG	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.164;ClippingRankSum=0.000;DP=515;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-21.162;QD=2.63;ReadPosRankSum=-4.080;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:450,64:0.12:514
chr7	142028485	.	C	A	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.477;ClippingRankSum=0.000;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-21.428;QD=2.88;ReadPosRankSum=-1.554;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:474,73:0.13:547
chr7	142028490	.	A	C	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.593;ClippingRankSum=0.000;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-21.469;QD=3.06;ReadPosRankSum=-0.137;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:474,74:0.14:548
chr7	142028500	.	A	G	1759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.221;ClippingRankSum=0.000;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-21.931;QD=3.10;ReadPosRankSum=2.572;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:491,77:0.14:568
chr7	142028506	.	CA	TG	1714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.395;ClippingRankSum=0.000;DP=578;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-22.129;QD=2.97;ReadPosRankSum=4.057;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:499,78:0.14:577
chr7	142028533	.	C	A	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.202;ClippingRankSum=0.000;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-21.551;QD=3.14;ReadPosRankSum=7.171;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:467,75:0.14:542
chr7	142028538	.	G	A	1706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.169;ClippingRankSum=0.000;DP=537;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-21.427;QD=3.18;ReadPosRankSum=6.158;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:461,75:0.14:536
chr7	142028540	.	G	A	1727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.236;ClippingRankSum=0.000;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-21.282;QD=3.27;ReadPosRankSum=5.580;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:454,75:0.14:529
chr7	142028542	.	G	T	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.129;ClippingRankSum=0.000;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-21.114;QD=3.36;ReadPosRankSum=4.956;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:446,75:0.14:521
chr7	142028546	.	TC	CT	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.052;ClippingRankSum=0.000;DP=513;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-20.924;QD=3.49;ReadPosRankSum=3.632;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:437,75:0.15:512
chr7	142028551	.	CA	GG	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.129;ClippingRankSum=0.000;DP=493;ExcessHet=3.0103;FS=1.616;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-20.643;QD=3.55;ReadPosRankSum=2.174;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:419,73:0.15:492
chr7	142028555	.	C	T	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.981;ClippingRankSum=0.000;DP=483;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-20.424;QD=3.73;ReadPosRankSum=0.915;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:409,73:0.15:482
chr7	142028578	.	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.076;ClippingRankSum=0.000;DP=399;ExcessHet=3.0103;FS=2.370;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-18.331;QD=0.95;ReadPosRankSum=-4.170;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:335,63:0.16:398
chr7	142032391	.	A	AAC	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.434;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=7.199;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-16.860;QD=0.70;ReadPosRankSum=3.768;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:341,32:0.09:373
chr7	142032393	.	GGA	G	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.563;ClippingRankSum=0.000;DP=385;ExcessHet=3.0103;FS=7.149;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-17.091;QD=0.62;ReadPosRankSum=3.831;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:351,32:0.08:383
chr7	142032400	.	G	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;ClippingRankSum=0.000;DP=389;ExcessHet=3.0103;FS=7.128;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-17.182;QD=0.62;ReadPosRankSum=3.358;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:355,32:0.08:387
chr7	142032411	.	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.818;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-18.328;QD=0.18;ReadPosRankSum=2.163;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:380,30:0.07:410
chr7	142032610	.	A	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=4.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.783;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:259,32:0.11:291
chr7	142032613	.	TG	CA	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=3.662;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.975;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:245,31:0.11:276
chr7	142032646	rs78118526	G	A	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.96;SOR=1.442;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	142032646	.	GTGTACATAGTGCAA	ATGTACATAGTGCAA,ATGTACATGGTGAAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.34;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=36;MMLQ=24;MQ=60.0;NF=81,20;NR=120,29;PP=2962,2924;QD=20;SC=TTAAAAATGTGTGTACATAGT;SbPval=0.53;Source=Platypus;TC=202;TCF=82;TCR=120;TR=201,49;WE=142032668;WS=142032636;set=Platypus	GT:AF:DP	0/1:1.00:202
chr7	142032654	rs190649630	A	G	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=4.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.141;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:148,24:0.14:172
chr7	142032658	.	C	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.114;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:141,23:0.14:164
chr7	142032660	.	A	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.599;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:137,21:0.13:158
chr7	142032677	.	G	A	616	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=1;MGOF=64;MMLQ=26;MQ=60.0;NF=15;NR=30;PP=616;QD=14.461582501;SC=AATCTAGCTAGTTAACATATG;SbPval=0.51;Source=Platypus;TC=145;TCF=47;TCR=98;TR=45;WE=142032685;WS=142032667;set=Platypus	GT:AD:AF:DP	1/0:100,45:0.31:145
chr7	142032713	.	A	T	329	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=1;MGOF=80;MMLQ=28;MQ=59.94;NF=3;NR=18;PP=329;QD=17.3224386927;SC=TATCCTTTCCAGTGGTGAGAA;SbPval=0.68;Source=Platypus;TC=78;TCF=13;TCR=65;TR=21;WE=142032721;WS=142032703;set=Platypus	GT:AD:AF:DP	0/1:57,21:0.27:78
chr7	142032729	.	A	G	127.77	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:39,9:0.19:48
chr7	142045446	rs56060483	G	C	4995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.84;ReadPosRankSum=-0.446;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:148,132:0.47:280
chr7	142045449	rs371824542	A	G	4992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.164;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-0.052;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:150,131:0.47:281
chr7	142045518	.	G	A	4519.77	.	AC=1;AF=0.500;AN=2;DP=475;set=Intersection	GT:AD:AF:DP	0/1:244,226:0.48:470
chr7	142045613	.	G	T	5698.77	.	AC=1;AF=0.500;AN=2;DP=629;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:358,265:0.43:623
chr7	142045678	rs61750018	ACT	GTC	13616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.917;ClippingRankSum=0.000;DB;DP=818;ExcessHet=3.0103;FS=1.751;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.132;QD=16.77;ReadPosRankSum=2.137;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:457,355:0.44:812
chr7	142045683	rs61750019	A	G	14014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.578;ClippingRankSum=0.000;DB;DP=835;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.135;QD=16.89;ReadPosRankSum=2.635;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:468,362:0.44:830
chr7	142045690	rs61750021	A	G	14326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=847;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.124;QD=17.02;ReadPosRankSum=2.658;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:471,371:0.44:842
chr7	142045692	rs61750022	AC	GT	14279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;ClippingRankSum=0.000;DB;DP=848;ExcessHet=3.0103;FS=2.459;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.134;QD=16.94;ReadPosRankSum=3.063;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:475,368:0.44:843
chr7	142045802	rs2855871	T	C	5778.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:252,276:0.52:528
chr7	142045848	rs17225	T	C	10880.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr7	142045897	rs361402	C	T	3765.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:150,168:0.53:318
chr7	142045899	rs2974900	A	G	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:168,144:0.46:312
chr7	142045912	rs374368376	A	G	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:167,119:0.42:286
chr7	142045924	rs1811089	A	G	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:107,164:0.61:271
chr7	142045951	.	T	TGCTCATTCATCCATGTGGCAACGTTACATCCTATGCTCATATTTAGAGTGTGGGTTTTCTTTAGCG	1260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=55.863;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-3.543;QD=7.33;ReadPosRankSum=-6.434;SOR=5.041;set=HC	GT:AD:AF:DP	0/1:130,42:0.24:172
chr7	142099425	.	A	G	1574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.766;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-11.379;QD=5.15;ReadPosRankSum=2.743;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:242,64:0.21:306
chr7	142099438	.	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=11.243;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-11.917;QD=0.20;ReadPosRankSum=3.076;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:299,56:0.16:355
chr7	142099484	.	G	C	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.253;ClippingRankSum=0.000;DP=632;ExcessHet=3.0103;FS=4.461;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-18.706;QD=1.41;ReadPosRankSum=-3.581;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:487,109:0.18:596
chr7	142099512	rs373830246	T	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.241;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=9.523;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-21.075;QD=0.74;ReadPosRankSum=1.329;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:597,110:0.16:707
chr7	142099533	.	T	C	2821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;ClippingRankSum=0.000;DP=810;ExcessHet=3.0103;FS=3.741;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-23.284;QD=3.50;ReadPosRankSum=3.602;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:685,121:0.15:806
chr7	142099537	.	G	T	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DP=820;ExcessHet=3.0103;FS=3.728;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-23.515;QD=3.44;ReadPosRankSum=2.971;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:697,119:0.15:816
chr7	142099541	.	T	C	2770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DP=826;ExcessHet=3.0103;FS=3.863;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-23.961;QD=3.37;ReadPosRankSum=2.343;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:706,116:0.14:822
chr7	142099548	.	A	G	2361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DP=833;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-24.738;QD=2.85;ReadPosRankSum=1.414;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:723,107:0.13:830
chr7	142099571	.	C	T	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DP=825;ExcessHet=3.0103;FS=10.441;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-26.760;QD=0.46;ReadPosRankSum=-3.058;SOR=1.850;set=HC	GT:AD:AF:DP	0/1:736,76:0.09:812
chr7	142099581	.	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.452;ClippingRankSum=0.000;DP=778;ExcessHet=3.0103;FS=34.933;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-26.655;QD=0.41;ReadPosRankSum=-2.683;SOR=6.364;set=HC	GT:AD:AF:DP	0/1:724,52:0.07:776
chr7	142120168	.	TCA	T,TCACA	2453.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=202;set=Intersection	GT:AF:DP	1/2:0.52,0.30:157
chr7	142124170	rs361452	C	T	10125.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr7	142124424	rs361449	T	G	9025.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr7	142131709	.	T	C	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.150;ClippingRankSum=0.000;DP=368;ExcessHet=3.0103;FS=12.652;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-13.915;QD=1.76;ReadPosRankSum=-4.006;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:338,30:0.08:368
chr7	142131710	.	G	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=12.092;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-13.467;QD=1.83;ReadPosRankSum=-4.222;SOR=1.686;set=HC	GT:AD:AF:DP	0/1:339,32:0.09:371
chr7	142131734	.	A	T	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DP=421;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-13.149;QD=3.56;ReadPosRankSum=-3.543;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:359,62:0.15:421
chr7	142131738	.	G	GA	1551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DP=425;ExcessHet=3.0103;FS=3.716;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-13.590;QD=3.65;ReadPosRankSum=-2.703;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:362,63:0.15:425
chr7	142131746	.	T	C	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DP=425;ExcessHet=3.0103;FS=2.575;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-13.689;QD=3.96;ReadPosRankSum=-0.955;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:359,66:0.16:425
chr7	142131747	rs368257836	G	A	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=3.616;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-13.519;QD=3.94;ReadPosRankSum=-0.983;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:361,68:0.16:429
chr7	142131779	rs370810757	A	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.847;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-14.568;QD=1.87;ReadPosRankSum=2.279;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:377,88:0.19:465
chr7	142131832	rs371240412	C	T	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.026;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-11.656;QD=5.70;ReadPosRankSum=-1.438;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:277,69:0.20:346
chr7	142131836	rs375356148	C	G	1979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-11.633;QD=5.84;ReadPosRankSum=-1.559;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:273,66:0.19:339
chr7	142131858	rs367836940	C	A	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.772;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-10.127;QD=4.05;ReadPosRankSum=-2.591;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:213,40:0.16:253
chr7	142131868	rs374575972	C	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-10.813;QD=2.89;ReadPosRankSum=-2.670;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:185,29:0.14:214
chr7	142131872	rs368030585	G	T	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-11.846;QD=2.21;ReadPosRankSum=-1.975;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:175,23:0.12:198
chr7	142131885	.	A	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=3.670;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-11.978;QD=1.64;ReadPosRankSum=-2.286;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:159,18:0.10:177
chr7	142131889	.	A	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.138;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=7.421;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-12.000;QD=1.31;ReadPosRankSum=-2.638;SOR=1.662;set=HC	GT:AD:AF:DP	0/1:150,17:0.10:167
chr7	142131894	.	AA	CG	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=8.342;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-12.464;QD=1.07;ReadPosRankSum=-2.654;SOR=2.021;set=HC	GT:AD:AF:DP	0/1:142,15:0.10:157
chr7	142131904	.	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=5.515;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-11.025;QD=0.30;ReadPosRankSum=-2.369;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:114,9:0.07:123
chr7	142131991	.	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-5.816;QD=1.37;ReadPosRankSum=1.456;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:40,5:0.11:45
chr7	142131999	.	T	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-5.604;QD=1.68;ReadPosRankSum=1.553;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:37,5:0.12:42
chr7	142132011	.	T	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-5.155;QD=2.47;ReadPosRankSum=0.673;SOR=0.112;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr7	142139271	rs146977487	TG	CA	7702.85	.	AC=2;AF=1.00;AN=2;DB;DP=196;JOINED;set=Intersection	GT:AD:AF:DP	1/1:13,183:0.93:196
chr7	142139348	rs73742284	C	T	10668.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr7	142143639	rs377139967	T	G	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.352;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=38.059;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-6.542;QD=7.86;ReadPosRankSum=2.118;SOR=0.067;set=HC	GT:AD:AF:DP	0/1:149,52:0.26:201
chr7	142143646	rs369634458	G	A	1413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=39.072;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-7.371;QD=6.61;ReadPosRankSum=2.767;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:168,46:0.21:214
chr7	142143675	.	A	C	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.713;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=34.787;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-9.518;QD=1.90;ReadPosRankSum=1.137;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:262,36:0.12:298
chr7	142143681	.	A	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;ClippingRankSum=0.000;DP=312;ExcessHet=3.0103;FS=48.963;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-10.790;QD=1.26;ReadPosRankSum=1.844;SOR=2.227;set=HC	GT:AD:AF:DP	0/1:281,30:0.10:311
chr7	142143684	.	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=48.506;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-11.083;QD=0.91;ReadPosRankSum=1.487;SOR=2.228;set=HC	GT:AD:AF:DP	0/1:297,30:0.09:327
chr7	142143687	.	A	G	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=40.136;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-11.455;QD=0.87;ReadPosRankSum=1.191;SOR=2.155;set=HC	GT:AD:AF:DP	0/1:307,29:0.09:336
chr7	142143804	rs73742281	A	C	14202.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr7	142143839	.	GA	AG	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.510;ClippingRankSum=0.000;DP=416;ExcessHet=3.0103;FS=41.866;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-20.331;QD=0.09;ReadPosRankSum=-7.224;SOR=6.665;set=HC	GT:AD:AF:DP	0/1:388,27:0.07:415
chr7	142143879	rs376540425	A	T	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:297,128:0.30:425
chr7	142143906	.	GT	CC	9381.77	.	AC=1;AF=0.500;AN=2;DP=527;JOINED;set=Intersection	GT:AD:AF:DP	0/1:282,244:0.46:526
chr7	142143941	rs368607254	T	C	8111.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:306,381:0.55:687
chr7	142143953	rs371156869	G	A	10090.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:317,455:0.59:772
chr7	142143993	rs374220425	C	A	12163.77	.	AC=1;AF=0.500;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	0/1:337,566:0.63:903
chr7	142144004	rs368631399	T	A	12624.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:334,573:0.63:907
chr7	142144022	rs371600923	T	C	11837.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	0/1:321,554:0.63:875
chr7	142144059	.	A	C	9304.77	.	AC=1;AF=0.500;AN=2;DP=653;set=Intersection	GT:AD:AF:DP	0/1:250,402:0.62:652
chr7	142144091	.	GG	AA	10047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=3.576;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-11.947;QD=23.75;ReadPosRankSum=-1.200;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:165,258:0.61:423
chr7	142144101	.	C	T	8969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=3.929;MLEAC=1;MLEAF=0.500;MQ=54.28;MQRankSum=-12.123;QD=25.20;ReadPosRankSum=-1.750;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:141,215:0.60:356
chr7	142144111	.	T	C	7388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.893;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=13.104;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=-12.536;QD=24.15;ReadPosRankSum=-1.519;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:126,180:0.59:306
chr7	142144129	.	A	G	4966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=7.872;MLEAC=1;MLEAF=0.500;MQ=53.05;MQRankSum=-12.322;QD=20.69;ReadPosRankSum=-1.516;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:105,135:0.56:240
chr7	142144135	.	G	A	4659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.829;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=11.847;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=-11.589;QD=22.08;ReadPosRankSum=-0.998;SOR=1.522;set=HC	GT:AD:AF:DP	0/1:97,114:0.54:211
chr7	142144142	.	T	A	4163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=21.885;MLEAC=1;MLEAF=0.500;MQ=53.74;MQRankSum=-10.707;QD=23.13;ReadPosRankSum=-1.212;SOR=2.234;set=HC	GT:AD:AF:DP	0/1:84,96:0.53:180
chr7	142148850	.	G	A	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=3.454;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-10.389;QD=3.57;ReadPosRankSum=-2.702;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:93,17:0.15:110
chr7	142148878	rs370978147	T	C	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-13.036;QD=5.11;ReadPosRankSum=-0.314;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:143,30:0.17:173
chr7	142148881	rs374566766	C	A	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=8.140;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-13.510;QD=4.67;ReadPosRankSum=-0.601;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:152,34:0.18:186
chr7	142148919	rs376682174	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=7.051;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-15.799;QD=0.73;ReadPosRankSum=3.709;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:263,47:0.15:310
chr7	142148963	rs371195527	C	T	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-18.044;QD=1.06;ReadPosRankSum=1.676;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:413,44:0.10:457
chr7	142148969	.	AA	TC	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=0.967;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-17.776;QD=0.83;ReadPosRankSum=1.118;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:417,40:0.09:457
chr7	142149349	rs140504979	A	C	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	142162001	rs73742263	A	C	15830.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr7	142162050	rs71878	A	G	16455.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr7	142168348	.	G	A	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=21.083;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-12.378;QD=3.58;ReadPosRankSum=-3.313;SOR=4.003;set=HC	GT:AD:AF:DP	0/1:134,21:0.14:155
chr7	142168351	.	T	C	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=15.701;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-12.865;QD=3.95;ReadPosRankSum=-4.241;SOR=2.512;set=HC	GT:AD:AF:DP	0/1:141,27:0.16:168
chr7	142168362	.	A	T	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=16.557;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-12.583;QD=6.26;ReadPosRankSum=-3.850;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:175,41:0.19:216
chr7	142168365	.	C	T	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.465;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=12.745;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-12.282;QD=6.46;ReadPosRankSum=-4.217;SOR=1.648;set=HC	GT:AD:AF:DP	0/1:184,48:0.21:232
chr7	142168371	.	C	T	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.231;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-13.180;QD=6.86;ReadPosRankSum=-5.108;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:204,69:0.25:273
chr7	142168414	rs374005717	G	C	3389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=3.403;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-14.122;QD=6.58;ReadPosRankSum=-1.933;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:330,185:0.36:515
chr7	142168429	rs55634899	A	G	24973.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr7	142168452	rs361355	C	A	24891.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr7	142168662	rs73742240	CG	TC	8160.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	142168799	.	C	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=3.592;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-7.586;QD=1.61;ReadPosRankSum=0.134;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:139,17:0.11:156
chr7	142168803	.	C	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=5.141;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-7.533;QD=1.93;ReadPosRankSum=0.880;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:137,17:0.11:154
chr7	142168818	.	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=5.419;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-7.170;QD=2.61;ReadPosRankSum=2.413;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:113,17:0.13:130
chr7	142168825	.	C	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.028;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=7.569;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-6.857;QD=3.43;ReadPosRankSum=2.487;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:103,17:0.14:120
chr7	142168835	.	CA	TG	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.715;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=9.833;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-6.706;QD=4.07;ReadPosRankSum=2.629;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr7	142168839	.	G	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.132;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=10.345;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-6.530;QD=4.44;ReadPosRankSum=2.521;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:87,18:0.17:105
chr7	142168856	rs73742239	C	G	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:18,70:0.80:88
chr7	142168862	.	A	G	525.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:65,18:0.22:83
chr7	142176378	rs361393	A	G	14094.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr7	142180566	.	AG	TC	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.230;ClippingRankSum=0.000;DP=798;ExcessHet=3.0103;FS=23.024;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-28.128;QD=1.35;ReadPosRankSum=1.258;SOR=3.099;set=HC	GT:AD:AF:DP	0/1:718,76:0.10:794
chr7	142180570	.	G	A	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.961;ClippingRankSum=0.000;DP=824;ExcessHet=3.0103;FS=18.587;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-28.581;QD=1.62;ReadPosRankSum=1.003;SOR=2.883;set=HC	GT:AD:AF:DP	0/1:740,80:0.10:820
chr7	142180573	.	TG	CC	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.200;ClippingRankSum=0.000;DP=842;ExcessHet=3.0103;FS=14.995;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-28.884;QD=1.73;ReadPosRankSum=-0.412;SOR=2.401;set=HC	GT:AD:AF:DP	0/1:750,88:0.11:838
chr7	142180578	.	G	A	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.448;ClippingRankSum=0.000;DP=879;ExcessHet=3.0103;FS=17.082;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-29.506;QD=2.05;ReadPosRankSum=-1.545;SOR=2.429;set=HC	GT:AD:AF:DP	0/1:778,97:0.11:875
chr7	142180584	rs373875376	TCC	T	2311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.552;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=21.216;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-30.007;QD=2.55;ReadPosRankSum=-3.449;SOR=2.647;set=HC	GT:AD:AF:DP	0/1:795,111:0.12:906
chr7	142180591	.	TGG	T	2837.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.139;ClippingRankSum=0.000;DP=934;ExcessHet=3.0103;FS=23.912;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-30.428;QD=3.04;ReadPosRankSum=-4.189;SOR=2.659;set=HC	GT:AD:AF:DP	0/1:814,118:0.13:932
chr7	142180593	.	G	GTTTT	2861.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.779;ClippingRankSum=0.000;DP=932;ExcessHet=3.0103;FS=23.912;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-30.395;QD=3.08;ReadPosRankSum=-4.028;SOR=2.668;set=HC	GT:AD:AF:DP	0/1:812,118:0.13:930
chr7	142180596	.	G	A	3022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.892;ClippingRankSum=0.000;DP=953;ExcessHet=3.0103;FS=18.960;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-29.677;QD=3.18;ReadPosRankSum=-5.589;SOR=2.331;set=HC	GT:AD:AF:DP	0/1:816,136:0.14:952
chr7	142180618	.	TG	CA	7138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.527;ClippingRankSum=0.000;DP=1092;ExcessHet=3.0103;FS=9.397;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-25.809;QD=6.55;ReadPosRankSum=-6.614;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:863,227:0.21:1090
chr7	142180625	.	T	C	7466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.049;ClippingRankSum=0.000;DP=1098;ExcessHet=3.0103;FS=9.172;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-25.352;QD=6.81;ReadPosRankSum=-4.388;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:860,236:0.22:1096
chr7	142180633	.	G	T	7985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.526;ClippingRankSum=0.000;DP=1077;ExcessHet=3.0103;FS=8.940;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-23.928;QD=7.43;ReadPosRankSum=-1.498;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:833,242:0.23:1075
chr7	142180635	.	T	G	8132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.902;ClippingRankSum=0.000;DP=1081;ExcessHet=3.0103;FS=8.993;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-23.387;QD=7.54;ReadPosRankSum=-1.183;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:829,250:0.23:1079
chr7	142180640	.	GA	TG	8594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.088;ClippingRankSum=0.000;DP=1081;ExcessHet=3.0103;FS=10.142;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-22.968;QD=7.97;ReadPosRankSum=0.820;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:822,257:0.24:1079
chr7	142180646	.	AG	CT	8763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.088;ClippingRankSum=0.000;DP=1062;ExcessHet=3.0103;FS=8.522;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-22.017;QD=8.27;ReadPosRankSum=2.414;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:792,268:0.25:1060
chr7	142180704	rs368420989	G	T	8275.77	.	AC=1;AF=0.500;AN=2;DB;DP=898;set=Intersection	GT:AD:AF:DP	0/1:495,401:0.45:896
chr7	142180737	rs372013265	T	A	6782.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:448,312:0.41:760
chr7	142180770	rs375278683	T	C	3536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-14.807;QD=6.05;ReadPosRankSum=-2.215;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:398,187:0.32:585
chr7	142180821	rs369065333	GAGA	G	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.984;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=19.014;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-17.727;QD=0.81;ReadPosRankSum=-7.548;SOR=2.997;set=HC	GT:AD:AF:DP	0/1:480,50:0.09:530
chr7	142180956	rs361423	AT	GG	10619.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	142197606	rs373222208	T	C	2808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.781;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=20.269;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-4.034;QD=16.92;ReadPosRankSum=1.052;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:91,75:0.45:166
chr7	142197613	rs376535639	T	C	2758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=17.692;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-4.258;QD=16.04;ReadPosRankSum=0.951;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:99,73:0.42:172
chr7	142197620	rs17281	C	T	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:68,103:0.60:171
chr7	142197770	.	A	ATT	223.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-7.910;QD=0.83;ReadPosRankSum=-0.933;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:246,24:0.09:270
chr7	142197771	.	GCA	G	215.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.235;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-8.020;QD=0.78;ReadPosRankSum=-0.232;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:253,24:0.09:277
chr7	142197782	rs377242129	T	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.234;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-7.704;QD=0.89;ReadPosRankSum=0.178;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:243,25:0.09:268
chr7	142197807	rs369644106	C	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-8.191;QD=1.16;ReadPosRankSum=1.866;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:244,26:0.10:270
chr7	142197808	rs371965058	T	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-8.191;QD=1.14;ReadPosRankSum=1.835;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:244,26:0.10:270
chr7	142197812	.	C	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=3.717;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-8.644;QD=1.28;ReadPosRankSum=1.307;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:246,27:0.10:273
chr7	142197813	rs369221441	C	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-8.610;QD=1.32;ReadPosRankSum=1.165;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:244,27:0.10:271
chr7	142197835	rs17280	C	T	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr7	142197845	rs372935433	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=10.846;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-6.949;QD=0.33;ReadPosRankSum=-0.002;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:215,18:0.08:233
chr7	142197846	rs375613822	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=10.798;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-6.917;QD=0.27;ReadPosRankSum=-0.202;SOR=1.399;set=HC	GT:AD:AF:DP	0/1:213,18:0.08:231
chr7	142197848	rs368955078	A	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=13.651;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-7.167;QD=0.31;ReadPosRankSum=-0.041;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:216,17:0.07:233
chr7	142197892	.	G	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.508;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=8.620;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-7.515;QD=0.34;ReadPosRankSum=-2.621;SOR=1.423;set=HC	GT:AD:AF:DP	0/1:200,18:0.08:218
chr7	142197897	rs17279	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=10.446;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-7.698;QD=0.37;ReadPosRankSum=-1.784;SOR=1.419;set=HC	GT:AD:AF:DP	0/1:210,18:0.08:228
chr7	142197910	.	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.242;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=23.859;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-7.637;QD=0.38;ReadPosRankSum=-1.777;SOR=2.689;set=HC	GT:AD:AF:DP	0/1:195,17:0.08:212
chr7	142197912	.	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=21.434;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-7.773;QD=0.37;ReadPosRankSum=-1.663;SOR=2.554;set=HC	GT:AD:AF:DP	0/1:190,16:0.08:206
chr7	142197913	.	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.595;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=21.465;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-7.692;QD=0.39;ReadPosRankSum=-1.919;SOR=2.553;set=HC	GT:AD:AF:DP	0/1:186,16:0.08:202
chr7	142197921	.	A	ACT	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=27.767;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-8.303;QD=0.84;ReadPosRankSum=-2.401;SOR=2.680;set=HC	GT:AD:AF:DP	0/1:191,17:0.08:208
chr7	142197923	.	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.001;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=24.733;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-8.559;QD=0.51;ReadPosRankSum=-2.185;SOR=2.549;set=HC	GT:AD:AF:DP	0/1:191,16:0.08:207
chr7	142197928	.	TCC	T	83.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=26.617;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-8.945;QD=0.41;ReadPosRankSum=-2.712;SOR=2.685;set=HC	GT:AD:AF:DP	0/1:189,17:0.08:206
chr7	142197931	.	A	T	104.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.134;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=24.090;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-8.876;QD=0.52;ReadPosRankSum=-2.746;SOR=2.685;set=HC	GT:AD:AF:DP	0/1:186,17:0.08:203
chr7	142197935	.	T	TGAG	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=29.888;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-9.029;QD=0.23;ReadPosRankSum=-2.592;SOR=3.243;set=HC	GT:AD:AF:DP	0/1:181,16:0.08:197
chr7	142197961	.	TGC	T	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-6.602;QD=1.47;ReadPosRankSum=-1.252;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:163,19:0.10:182
chr7	142197965	.	C	CCA	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-7.135;QD=1.52;ReadPosRankSum=-1.199;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:157,19:0.11:176
chr7	142197978	.	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-6.887;QD=0.52;ReadPosRankSum=-0.697;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:146,19:0.12:165
chr7	142197983	rs369385273	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-6.981;QD=0.46;ReadPosRankSum=-0.546;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:142,18:0.11:160
chr7	142197986	rs148941368	T	C	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	142198030	.	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.472;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=15.347;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-7.360;QD=0.28;ReadPosRankSum=-2.027;SOR=3.709;set=HC	GT:AD:AF:DP	0/1:105,10:0.09:115
chr7	142198040	.	C	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=10.037;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-7.264;QD=0.32;ReadPosRankSum=-1.218;SOR=2.772;set=HC	GT:AD:AF:DP	0/1:90,7:0.07:97
chr7	142198041	.	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=10.037;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-7.264;QD=0.35;ReadPosRankSum=-0.924;SOR=2.772;set=HC	GT:AD:AF:DP	0/1:90,7:0.07:97
chr7	142206472	.	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=24.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-1.816;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:86,9:0.09:95
chr7	142206473	rs11764626	G	A	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:9,89:0.91:98
chr7	142206477	.	C	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=21.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-1.433;SOR=1.988;set=HC	GT:AD:AF:DP	0/1:90,9:0.09:99
chr7	142206834	.	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=9.894;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-9.734;QD=0.38;ReadPosRankSum=0.854;SOR=2.240;set=HC	GT:AD:AF:DP	0/1:112,10:0.08:122
chr7	142206838	.	C	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=9.894;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-9.651;QD=0.48;ReadPosRankSum=1.073;SOR=2.239;set=HC	GT:AD:AF:DP	0/1:110,10:0.08:120
chr7	142206846	.	C	G	51.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=10.151;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-9.651;QD=0.43;ReadPosRankSum=1.586;SOR=2.296;set=HC	GT:AD:AF:DP	0/1:110,10:0.08:120
chr7	142206847	.	AG	A	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=10.098;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-9.693;QD=0.30;ReadPosRankSum=1.634;SOR=2.299;set=HC	GT:AD:AF:DP	0/1:111,10:0.08:121
chr7	142206878	.	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=9.895;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-7.960;QD=0.24;ReadPosRankSum=1.027;SOR=2.244;set=HC	GT:AD:AF:DP	0/1:120,10:0.08:130
chr7	142206893	.	T	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=7.394;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-7.650;QD=0.45;ReadPosRankSum=-0.546;SOR=2.082;set=HC	GT:AD:AF:DP	0/1:111,10:0.08:121
chr7	142211193	rs6977669	C	T	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	142231625	rs17249	C	A	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	142231694	.	T	C	1942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=2.416;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-6.698;QD=6.23;ReadPosRankSum=-3.086;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:249,63:0.20:312
chr7	142231698	.	G	A	2035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DP=314;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-6.518;QD=6.50;ReadPosRankSum=-1.030;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:247,66:0.21:313
chr7	142231701	rs17248	G	T	2159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-6.417;QD=6.97;ReadPosRankSum=0.004;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:243,67:0.22:310
chr7	142231703	.	G	T	2177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-6.121;QD=6.94;ReadPosRankSum=-0.879;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:241,73:0.23:314
chr7	142231740	rs372096379	T	C	5281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.379;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-6.830;QD=13.68;ReadPosRankSum=0.918;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:242,144:0.37:386
chr7	142231744	rs376782927	A	G	2650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-7.313;QD=6.78;ReadPosRankSum=0.237;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:247,144:0.37:391
chr7	142231762	.	A	T	4228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;ClippingRankSum=0.000;DP=359;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-7.997;QD=11.81;ReadPosRankSum=-1.135;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:226,132:0.37:358
chr7	142231769	.	T	A	4073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.990;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=23.544;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-9.003;QD=13.14;ReadPosRankSum=0.995;SOR=1.665;set=HC	GT:AD:AF:DP	0/1:209,101:0.33:310
chr7	142231771	.	TT	CG	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=22.672;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-8.475;QD=5.78;ReadPosRankSum=0.760;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:207,96:0.32:303
chr7	142231780	.	CA	TC	3418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=15.544;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-8.832;QD=12.12;ReadPosRankSum=-0.625;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:187,95:0.34:282
chr7	142231793	.	A	AT	2687.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=19.752;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-9.568;QD=10.93;ReadPosRankSum=-0.080;SOR=1.733;set=HC	GT:AD:AF:DP	0/1:169,77:0.31:246
chr7	142231795	.	G	T	2692.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.453;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=21.484;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-9.517;QD=11.04;ReadPosRankSum=-0.377;SOR=1.767;set=HC	GT:AD:AF:DP	0/1:167,77:0.32:244
chr7	142231796	.	CCA	C	2725.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.819;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=20.087;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-9.639;QD=11.45;ReadPosRankSum=-0.230;SOR=1.733;set=HC	GT:AD:AF:DP	0/1:164,74:0.31:238
chr7	142231800	.	G	GA	2549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=20.916;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-9.718;QD=11.18;ReadPosRankSum=-0.299;SOR=1.798;set=HC	GT:AD:AF:DP	0/1:156,72:0.32:228
chr7	142231805	.	C	CTG	2429.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.908;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=19.396;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-9.779;QD=10.90;ReadPosRankSum=-0.689;SOR=1.750;set=HC	GT:AD:AF:DP	0/1:153,70:0.31:223
chr7	142231806	.	C	G	2444.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.234;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=17.874;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-9.901;QD=11.11;ReadPosRankSum=-0.838;SOR=1.706;set=HC	GT:AD:AF:DP	0/1:152,68:0.31:220
chr7	142231808	.	GCC	G	2357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=16.367;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-9.834;QD=11.02;ReadPosRankSum=-1.233;SOR=1.638;set=HC	GT:AD:AF:DP	0/1:147,67:0.31:214
chr7	142231826	.	T	C	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=15.097;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-10.488;QD=6.53;ReadPosRankSum=0.975;SOR=1.832;set=HC	GT:AD:AF:DP	0/1:134,45:0.25:179
chr7	142231852	.	T	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.130;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=32.383;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-11.555;QD=4.94;ReadPosRankSum=0.741;SOR=3.689;set=HC	GT:AD:AF:DP	0/1:115,27:0.19:142
chr7	142231861	.	C	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=46.700;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-11.665;QD=4.77;ReadPosRankSum=-0.011;SOR=5.744;set=HC	GT:AD:AF:DP	0/1:114,24:0.17:138
chr7	142231878	.	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.798;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=38.104;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-11.592;QD=3.05;ReadPosRankSum=-1.888;SOR=5.283;set=HC	GT:AD:AF:DP	0/1:117,19:0.14:136
chr7	142231888	.	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.033;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=33.127;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-11.377;QD=2.14;ReadPosRankSum=-3.141;SOR=5.087;set=HC	GT:AD:AF:DP	0/1:115,16:0.12:131
chr7	142231889	.	G	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.502;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=32.921;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-11.465;QD=2.10;ReadPosRankSum=-3.174;SOR=5.029;set=HC	GT:AD:AF:DP	0/1:117,16:0.12:133
chr7	142231896	.	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=25.182;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-11.205;QD=0.88;ReadPosRankSum=-2.882;SOR=4.504;set=HC	GT:AD:AF:DP	0/1:116,11:0.09:127
chr7	142232163	rs144354683	T	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	142242670	rs17219	T	G	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr7	142247134	rs361363	T	C	7239.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	142247263	.	G	A	2451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DP=438;ExcessHet=3.0103;FS=5.915;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-9.416;QD=5.62;ReadPosRankSum=-7.092;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:360,76:0.17:436
chr7	142247270	rs375846702	TG	CA	2879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=3.162;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-8.937;QD=6.56;ReadPosRankSum=-6.601;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:348,91:0.21:439
chr7	142247288	.	T	C	1954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DP=471;ExcessHet=3.0103;FS=5.933;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-8.304;QD=4.19;ReadPosRankSum=-1.525;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:346,121:0.26:467
chr7	142247347	rs361359	AT	CC	5357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=11.609;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-6.848;QD=11.99;ReadPosRankSum=2.106;SOR=1.437;set=HC	GT:AD:AF:DP	0/1:295,152:0.34:447
chr7	142247529	.	GGC	G	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=4.428;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-7.796;QD=1.90;ReadPosRankSum=-1.151;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:177,22:0.11:199
chr7	142247535	.	G	GAA	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=5.585;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-7.954;QD=2.14;ReadPosRankSum=-0.783;SOR=0.329;set=HC	GT:AD:AF:DP	0/1:175,24:0.12:199
chr7	142247538	.	CTG	C	110.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.197;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-3.841;QD=0.56;ReadPosRankSum=-2.014;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:182,14:0.07:196
chr7	142247539	.	T	C	584.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=2.894;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-7.650;QD=3.00;ReadPosRankSum=-0.209;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:170,25:0.13:195
chr7	142247540	.	G	A	581.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.294;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-7.524;QD=3.06;ReadPosRankSum=-0.242;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:165,25:0.13:190
chr7	142247541	.	C	CAT	122.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.786;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-4.123;QD=0.64;ReadPosRankSum=-2.065;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:178,15:0.08:193
chr7	142247546	.	C	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-6.992;QD=3.64;ReadPosRankSum=0.344;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:165,28:0.15:193
chr7	142247554	rs10265119	C	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-5.368;QD=1.01;ReadPosRankSum=-0.054;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:173,19:0.10:192
chr7	142247567	rs372792593	A	G	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=7.236;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-8.701;QD=12.24;ReadPosRankSum=2.127;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:119,58:0.33:177
chr7	142247571	rs376050671	A	G	2103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.032;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=7.153;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-8.579;QD=12.02;ReadPosRankSum=2.600;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:115,60:0.34:175
chr7	142247605	rs370122363	G	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:101,46:0.31:147
chr7	142250938	rs361439	T	G	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	142250988	rs361437	G	A	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	142251132	rs361436	G	T	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	142326607	rs17260	C	T	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	142326909	rs76454382	C	G	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	142334648	rs17210	A	T	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	142353577	rs71522189	C	CTTTGT	1802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.509;QD=10.30;ReadPosRankSum=1.016;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:121,54:0.31:175
chr7	142364553	rs17254	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:77,33:0.30:110
chr7	142378633	rs17243	G	A	2998.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:77,131:0.63:208
chr7	142378708	rs361418	T	G	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:302,147:0.33:449
chr7	142378831	rs76429157	C	G	13763.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr7	142423161	rs112325538	A	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	142423289	rs17251	C	A	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	142423562	rs62001054	C	T	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	142428611	rs361326	C	T	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	142428626	rs361327	A	C	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	142448199	rs112413030	GGGTGGAAA	G	1518.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	142458304	.	T	A	1707	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=3;MGOF=41;MMLQ=24;MQ=52.89;NF=31;NR=13;PP=1707;QD=39.5857093761;SC=AGCCTCACTGTGCTTGTTAAG;SbPval=0.65;Source=Platypus;TC=112;TCF=76;TCR=36;TR=44;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:68,44:0.39:112
chr7	142458316	.	A	T	1707	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=3;HapScore=3;MGOF=41;MMLQ=23;MQ=53.16;NF=43;NR=21;PP=1707;QD=27.215175196;SC=CTTGTTAAGGATTTCTAATTA;SbPval=0.5;Source=Platypus;TC=144;TCF=98;TCR=46;TR=64;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:80,64:0.44:144
chr7	142458371	rs367779270	T	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:174,50:0.22:224
chr7	142458409	rs200665515	C	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=11.399;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-6.805;QD=3.81;ReadPosRankSum=-0.505;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:248,44:0.15:292
chr7	142458412	rs202003805	C	T	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=9.775;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-6.969;QD=3.87;ReadPosRankSum=0.030;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:244,45:0.16:289
chr7	142458414	.	C	T	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=9.775;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-6.969;QD=3.88;ReadPosRankSum=0.758;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:244,45:0.16:289
chr7	142458437	rs372637371	C	T	1383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.385;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-8.708;QD=4.64;ReadPosRankSum=3.293;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:242,56:0.19:298
chr7	142458511	rs138464021	G	T	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-13.494;QD=2.68;ReadPosRankSum=-0.035;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:264,56:0.17:320
chr7	142458523	rs149246646	T	A	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=6.047;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-14.127;QD=3.22;ReadPosRankSum=-0.181;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:257,43:0.14:300
chr7	142458526	rs144422014	A	G	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=11.167;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-15.805;QD=3.77;ReadPosRankSum=-0.967;SOR=1.425;set=HC	GT:AD:AF:DP	0/1:253,45:0.15:298
chr7	142458527	rs148440491	C	G	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=6.162;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-14.540;QD=3.03;ReadPosRankSum=-0.622;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:259,41:0.14:300
chr7	142458531	rs147366981	C	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=6.362;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-14.885;QD=3.13;ReadPosRankSum=-1.690;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:254,40:0.14:294
chr7	142458542	.	A	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.360;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=13.054;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-16.453;QD=2.22;ReadPosRankSum=-2.687;SOR=1.695;set=HC	GT:AD:AF:DP	0/1:254,37:0.13:291
chr7	142458550	rs149455681	GC	CT	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.995;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=11.618;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-15.898;QD=1.61;ReadPosRankSum=-2.211;SOR=1.691;set=HC	GT:AD:AF:DP	0/1:252,27:0.10:279
chr7	142458661	.	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=31.289;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-6.710;QD=0.69;ReadPosRankSum=-0.353;SOR=4.163;set=HC	GT:AD:AF:DP	0/1:77,7:0.08:84
chr7	142458663	.	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.421;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=35.398;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-6.629;QD=0.75;ReadPosRankSum=-0.589;SOR=4.397;set=HC	GT:AD:AF:DP	0/1:77,8:0.09:85
chr7	142458666	rs372944704	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.052;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=7.199;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-3.860;QD=0.56;ReadPosRankSum=0.110;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:72,10:0.12:82
chr7	142458669	rs374824703	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.694;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=34.731;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-6.698;QD=1.52;ReadPosRankSum=0.415;SOR=4.398;set=HC	GT:AD:AF:DP	0/1:70,8:0.10:78
chr7	142458677	rs369222898	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=33.588;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-6.825;QD=1.66;ReadPosRankSum=1.300;SOR=4.609;set=HC	GT:AD:AF:DP	0/1:68,9:0.12:77
chr7	142458697	rs373299247	T	A	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.203;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.716;MLEAC=1;MLEAF=0.500;MQ=55.22;MQRankSum=-7.591;QD=14.98;ReadPosRankSum=1.133;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:47,30:0.39:77
chr7	142458700	rs376748793	G	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.717;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-7.583;QD=15.10;ReadPosRankSum=0.298;SOR=1.295;set=HC	GT:AD:AF:DP	0/1:45,32:0.42:77
chr7	142458719	rs373298203	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.316;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.206;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-3.171;QD=3.57;ReadPosRankSum=-0.475;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr7	142458737	rs370066365	C	G	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.271;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=18.455;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-4.809;QD=7.73;ReadPosRankSum=0.124;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:108,33:0.23:141
chr7	142458739	rs374137559	T	C	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=17.632;MLEAC=1;MLEAF=0.500;MQ=56.72;MQRankSum=-4.891;QD=7.62;ReadPosRankSum=-0.197;SOR=2.108;set=HC	GT:AD:AF:DP	0/1:108,35:0.24:143
chr7	142458768	rs376959792	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=6.550;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-5.441;QD=1.01;ReadPosRankSum=1.680;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:157,29:0.16:186
chr7	142458829	rs377669553	A	G	2635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-8.160;QD=11.12;ReadPosRankSum=0.230;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:161,76:0.32:237
chr7	142458837	rs370580835	A	T	2615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-8.802;QD=10.90;ReadPosRankSum=0.071;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:165,75:0.31:240
chr7	142458841	rs375181092	AT	A	2618.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-8.753;QD=11.00;ReadPosRankSum=-0.399;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:163,75:0.32:238
chr7	142458873	rs373388800	A	C	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-9.382;QD=8.33;ReadPosRankSum=-0.597;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:168,65:0.28:233
chr7	142458881	rs376074412	A	T	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=7.130;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-10.071;QD=8.75;ReadPosRankSum=0.791;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:152,52:0.25:204
chr7	142458884	rs370405149	C	G	1706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=10.193;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-10.141;QD=8.84;ReadPosRankSum=0.877;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:144,49:0.25:193
chr7	142458886	rs373808731	T	A	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.745;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=11.968;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-10.219;QD=8.34;ReadPosRankSum=1.103;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:143,48:0.25:191
chr7	142458887	rs368632869	T	C	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.914;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=9.127;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-10.329;QD=8.53;ReadPosRankSum=1.803;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:142,45:0.24:187
chr7	142458898	rs371109898	A	T	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-10.325;QD=7.98;ReadPosRankSum=2.015;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:127,41:0.24:168
chr7	142458902	.	G	C	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-10.174;QD=7.94;ReadPosRankSum=2.069;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:125,40:0.24:165
chr7	142458906	rs374242167	T	G	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=4.584;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-10.055;QD=7.89;ReadPosRankSum=1.745;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:118,39:0.25:157
chr7	142458910	rs368381895	C	T	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.792;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=6.060;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-9.696;QD=8.04;ReadPosRankSum=2.245;SOR=1.235;set=HC	GT:AD:AF:DP	0/1:115,36:0.24:151
chr7	142458929	rs371622191	G	C	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=4.090;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-8.236;QD=8.75;ReadPosRankSum=0.713;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:87,32:0.27:119
chr7	142458938	rs374770738	T	A	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=7.801;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-7.390;QD=9.09;ReadPosRankSum=0.837;SOR=1.533;set=HC	GT:AD:AF:DP	0/1:77,28:0.27:105
chr7	142458967	rs367567937	A	T	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.973;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-6.530;QD=9.83;ReadPosRankSum=-1.109;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr7	142458972	rs371766102	T	C	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.789;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=10.412;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-6.264;QD=8.74;ReadPosRankSum=-0.633;SOR=2.998;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr7	142458987	rs375094420	C	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr7	142459042	rs369844822	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr7	142460313	rs6666	T	C	4158.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:378,219:0.37:597
chr7	142460335	rs201550522	A	G	10805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.274;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-9.776;QD=19.83;ReadPosRankSum=3.111;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:226,319:0.59:545
chr7	142460339	rs200973660	G	A	2851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-7.499;QD=5.27;ReadPosRankSum=2.897;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:377,164:0.30:541
chr7	142460369	rs201719096	G	A	5184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=5.185;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-12.648;QD=12.03;ReadPosRankSum=4.624;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:268,163:0.38:431
chr7	142460374	rs200070487	A	G	2870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.793;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-10.435;QD=6.38;ReadPosRankSum=2.544;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:353,97:0.22:450
chr7	142460379	.	C	T	2873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DP=448;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-10.703;QD=6.49;ReadPosRankSum=1.021;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:350,93:0.21:443
chr7	142460388	rs1804561	C	T	2445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-11.958;QD=5.88;ReadPosRankSum=-0.994;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:337,79:0.19:416
chr7	142460394	rs377124851	T	C	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=2.850;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-6.210;QD=1.83;ReadPosRankSum=-1.666;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:361,51:0.12:412
chr7	142460412	.	A	C	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.039;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=25.687;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-17.768;QD=6.54;ReadPosRankSum=-5.483;SOR=1.734;set=HC	GT:AD:AF:DP	0/1:314,82:0.21:396
chr7	142460415	.	T	C	2391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.668;ClippingRankSum=0.000;DP=391;ExcessHet=3.0103;FS=31.939;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-18.278;QD=6.15;ReadPosRankSum=-5.564;SOR=2.035;set=HC	GT:AD:AF:DP	0/1:315,74:0.19:389
chr7	142460428	rs370303567	CCAA	C	1327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.776;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=26.063;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-20.022;QD=3.29;ReadPosRankSum=-5.462;SOR=2.713;set=HC	GT:AD:AF:DP	0/1:349,55:0.14:404
chr7	142460461	.	C	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.340;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=9.725;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-16.284;QD=0.19;ReadPosRankSum=-1.741;SOR=1.544;set=HC	GT:AD:AF:DP	0/1:334,26:0.07:360
chr7	142460463	.	T	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.190;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=16.484;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-18.174;QD=0.97;ReadPosRankSum=-2.963;SOR=1.987;set=HC	GT:AD:AF:DP	0/1:326,31:0.09:357
chr7	142460495	.	A	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.151;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=6.401;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-14.710;QD=0.18;ReadPosRankSum=-0.144;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:229,18:0.07:247
chr7	142460503	.	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=10.294;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-14.879;QD=0.39;ReadPosRankSum=-1.454;SOR=1.816;set=HC	GT:AD:AF:DP	0/1:204,19:0.09:223
chr7	142460531	rs374907758	CA	C	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=13.132;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-12.253;QD=2.08;ReadPosRankSum=1.385;SOR=2.127;set=HC	GT:AD:AF:DP	0/1:133,19:0.12:152
chr7	142460556	rs374121411	C	T	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=6.006;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-10.412;QD=2.18;ReadPosRankSum=0.946;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:96,14:0.13:110
chr7	142460569	rs377684105	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.035;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.904;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-9.242;QD=2.38;ReadPosRankSum=0.627;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:76,11:0.13:87
chr7	142460603	rs370565903	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-7.903;QD=1.20;ReadPosRankSum=-0.786;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:57,7:0.11:64
chr7	142460865	rs6667	T	C	7205.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	142468205	.	A	C	4227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.329;ClippingRankSum=0.000;DP=408;ExcessHet=3.0103;FS=8.503;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-16.489;QD=10.39;ReadPosRankSum=3.721;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:282,125:0.31:407
chr7	142468206	.	G	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.057;ClippingRankSum=0.000;DP=405;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-11.436;QD=1.28;ReadPosRankSum=3.416;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:362,42:0.10:404
chr7	142468213	.	A	G	4009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.261;ClippingRankSum=0.000;DP=425;ExcessHet=3.0103;FS=6.133;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-16.732;QD=9.46;ReadPosRankSum=5.361;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:308,116:0.27:424
chr7	142468218	.	G	A	1940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.539;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=4.864;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-10.848;QD=4.43;ReadPosRankSum=4.335;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:363,75:0.17:438
chr7	142468221	.	T	A	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.780;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=5.112;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-10.653;QD=4.23;ReadPosRankSum=5.591;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:375,72:0.16:447
chr7	142468228	.	A	G	3333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.042;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-17.138;QD=7.11;ReadPosRankSum=4.406;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:363,106:0.23:469
chr7	142468232	.	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.687;ClippingRankSum=0.000;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-12.629;QD=0.22;ReadPosRankSum=-2.010;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:445,36:0.07:481
chr7	142470290	rs11769872	T	C	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	142470364	rs11770572	T	C	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	142470544	rs377545759	C	T	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.697;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-10.499;QD=4.25;ReadPosRankSum=-1.471;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:477,150:0.24:627
chr7	142470582	rs374775884	T	C	23751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.864;ClippingRankSum=0.000;DB;DP=1226;ExcessHet=3.0103;FS=3.281;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-18.807;QD=20.15;ReadPosRankSum=0.610;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:577,602:0.51:1179
chr7	142470585	.	G	A	10998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.760;ClippingRankSum=0.000;DP=1289;ExcessHet=3.0103;FS=2.914;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-12.433;QD=8.86;ReadPosRankSum=-0.768;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:917,324:0.26:1241
chr7	142470597	.	G	A	28307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.829;ClippingRankSum=0.000;DP=1510;ExcessHet=3.0103;FS=4.064;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-21.342;QD=19.38;ReadPosRankSum=3.696;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:716,745:0.51:1461
chr7	142470607	.	A	T	14879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.141;ClippingRankSum=0.000;DP=1673;ExcessHet=3.0103;FS=4.792;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=-15.377;QD=9.16;ReadPosRankSum=1.498;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:1194,430:0.26:1624
chr7	142470612	rs367807406	A	G	15336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.195;ClippingRankSum=0.000;DB;DP=1771;ExcessHet=3.0103;FS=4.797;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-16.259;QD=8.91;ReadPosRankSum=1.122;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:1270,451:0.26:1721
chr7	142470614	.	C	T	15312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.595;ClippingRankSum=0.000;DP=1810;ExcessHet=3.0103;FS=3.830;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-16.822;QD=8.70;ReadPosRankSum=1.491;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:1296,464:0.26:1760
chr7	142470645	rs368963025	T	C	26612.77	.	AC=1;AF=0.500;AN=2;DB;DP=2038;set=Intersection	GT:AD:AF:DP	0/1:1038,948:0.48:1986
chr7	142470646	rs375588069	T	C	4813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.848;ClippingRankSum=0.000;DB;DP=2038;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-12.059;QD=2.42;ReadPosRankSum=2.515;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:1565,422:0.21:1987
chr7	142470683	.	C	CCT	3934.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.302;ClippingRankSum=0.000;DP=1792;ExcessHet=3.0103;FS=8.822;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-15.173;QD=2.37;ReadPosRankSum=-4.633;SOR=1.606;set=HC	GT:AD:AF:DP	0/1:1452,211:0.13:1663
chr7	142470685	.	ATG	A	3889.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.826;ClippingRankSum=0.000;DP=1694;ExcessHet=3.0103;FS=7.332;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-15.561;QD=2.33;ReadPosRankSum=-5.196;SOR=1.597;set=HC	GT:AD:AF:DP	0/1:1465,201:0.12:1666
chr7	142470686	.	T	C	10791.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.587;ClippingRankSum=0.000;DP=1667;ExcessHet=3.0103;FS=6.448;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-22.393;QD=6.58;ReadPosRankSum=-2.023;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:1278,363:0.22:1641
chr7	142470687	.	G	A	10803.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.299;ClippingRankSum=0.000;DP=1653;ExcessHet=3.0103;FS=5.302;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-22.607;QD=6.63;ReadPosRankSum=-2.313;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:1273,357:0.22:1630
chr7	142470691	rs10952531	G	C	24245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.563;ClippingRankSum=0.000;DB;DP=1615;ExcessHet=3.0103;FS=10.173;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=31.092;QD=15.19;ReadPosRankSum=6.729;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:525,1071:0.67:1596
chr7	142470693	.	T	C	18759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.531;ClippingRankSum=0.000;DP=1598;ExcessHet=3.0103;FS=10.398;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-31.213;QD=11.84;ReadPosRankSum=-7.864;SOR=1.374;set=HC	GT:AD:AF:DP	0/1:1065,519:0.33:1584
chr7	142470694	.	G	A	10251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0.000;DP=1581;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-23.252;QD=6.54;ReadPosRankSum=-5.045;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:1235,333:0.21:1568
chr7	142470703	.	G	T	1897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.942;ClippingRankSum=0.000;DP=1439;ExcessHet=3.0103;FS=5.113;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-18.630;QD=1.33;ReadPosRankSum=-5.163;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:1298,134:0.09:1432
chr7	142470707	.	A	G	1370.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=16.196;ClippingRankSum=0.000;DP=1366;ExcessHet=3.0103;FS=5.534;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-18.950;QD=1.01;ReadPosRankSum=-3.911;SOR=1.482;set=HC	GT:AD:AF:DP	0/1:1248,110:0.08:1358
chr7	142470708	rs375249350	C	T	7145.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=1345;ExcessHet=3.0103;FS=7.221;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-26.517;QD=5.34;ReadPosRankSum=-7.708;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:1098,239:0.18:1337
chr7	142470709	.	A	G	11879.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.484;ClippingRankSum=0.000;DP=1326;ExcessHet=3.0103;FS=11.700;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-35.122;QD=9.01;ReadPosRankSum=-8.906;SOR=1.575;set=HC	GT:AD:AF:DP	0/1:987,331:0.25:1318
chr7	142470715	.	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.656;ClippingRankSum=0.000;DP=1243;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-18.622;QD=0.14;ReadPosRankSum=-3.032;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:1152,83:0.07:1235
chr7	142470726	.	A	G	6398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.486;ClippingRankSum=0.000;DP=1068;ExcessHet=3.0103;FS=7.142;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-31.971;QD=6.03;ReadPosRankSum=-9.764;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:859,203:0.19:1062
chr7	142470733	.	G	A	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DP=984;ExcessHet=3.0103;FS=5.998;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-23.463;QD=2.19;ReadPosRankSum=-8.819;SOR=1.337;set=HC	GT:AD:AF:DP	0/1:865,113:0.12:978
chr7	142470754	.	A	G	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.883;ClippingRankSum=0.000;DP=689;ExcessHet=3.0103;FS=18.383;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-23.407;QD=2.57;ReadPosRankSum=-8.197;SOR=2.730;set=HC	GT:AD:AF:DP	0/1:602,76:0.11:678
chr7	142470758	.	T	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.749;ClippingRankSum=0.000;DP=655;ExcessHet=3.0103;FS=8.202;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-20.966;QD=0.50;ReadPosRankSum=-5.448;SOR=2.022;set=HC	GT:AD:AF:DP	0/1:577,50:0.08:627
chr7	142470768	.	T	C	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;ClippingRankSum=0.000;DP=544;ExcessHet=3.0103;FS=13.702;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-15.496;QD=0.68;ReadPosRankSum=-3.588;SOR=3.209;set=HC	GT:AD:AF:DP	0/1:490,44:0.08:534
chr7	142470773	.	A	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DP=499;ExcessHet=3.0103;FS=21.374;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-16.364;QD=0.83;ReadPosRankSum=-1.964;SOR=4.329;set=HC	GT:AD:AF:DP	0/1:447,42:0.09:489
chr7	142470789	rs368011190	C	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=20.629;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-14.070;QD=1.10;ReadPosRankSum=3.049;SOR=5.182;set=HC	GT:AD:AF:DP	0/1:368,41:0.10:409
chr7	142470821	rs371709048	C	A	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.808;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=8.598;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-11.001;QD=5.56;ReadPosRankSum=0.793;SOR=2.085;set=HC	GT:AD:AF:DP	0/1:197,45:0.19:242
chr7	142478608	rs73742439	G	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	142478755	rs73742441	T	C	12927.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr7	142478771	rs201689354	A	AC	13593.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	142478853	.	T	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DP=616;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-15.052;QD=0.47;ReadPosRankSum=-6.780;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:567,47:0.08:614
chr7	142478865	.	T	C	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DP=693;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-14.884;QD=1.08;ReadPosRankSum=-5.306;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:627,64:0.09:691
chr7	142478881	.	T	TAG	1517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DP=795;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-15.591;QD=1.91;ReadPosRankSum=-1.755;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:715,78:0.10:793
chr7	142478897	rs73742442	T	C	26871.77	.	AC=2;AF=1.00;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	1/1:0,912:1.00:912
chr7	142478905	.	C	T	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.442;ClippingRankSum=0.000;DP=954;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-20.222;QD=2.45;ReadPosRankSum=2.101;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:836,116:0.12:952
chr7	142478913	.	CC	TA	2667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.148;ClippingRankSum=0.000;DP=964;ExcessHet=3.0103;FS=0.803;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-20.892;QD=2.78;ReadPosRankSum=2.872;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:839,122:0.13:961
chr7	142479912	rs200484890	C	G	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.009;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=13.737;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-3.655;QD=1.88;ReadPosRankSum=0.211;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:264,35:0.12:299
chr7	142479915	rs377017470	T	C	1285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.655;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=54.611;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-12.829;QD=4.23;ReadPosRankSum=-2.132;SOR=2.915;set=HC	GT:AD:AF:DP	0/1:233,71:0.23:304
chr7	142479917	rs369591097	C	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=14.313;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-3.074;QD=1.47;ReadPosRankSum=0.204;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:279,32:0.10:311
chr7	142479940	rs58649169	C	T	5193.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:116,221:0.66:337
chr7	142479954	rs201779716	C	T	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:216,127:0.37:343
chr7	142480002	rs199512312	C	A	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:249,181:0.42:430
chr7	142480012	rs56146961	C	T	9239.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:179,258:0.59:437
chr7	142480034	rs10808019	C	A	5254.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:160,247:0.61:407
chr7	142480067	rs201659809	C	T	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:198,98:0.33:296
chr7	142480079	rs371397657	T	G	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.545;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=15.574;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-14.931;QD=8.86;ReadPosRankSum=-1.430;SOR=1.590;set=HC	GT:AD:AF:DP	0/1:182,68:0.27:250
chr7	142480083	.	A	C	2138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.804;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=16.427;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-14.759;QD=9.26;ReadPosRankSum=-2.251;SOR=1.640;set=HC	GT:AD:AF:DP	0/1:167,64:0.28:231
chr7	142480095	rs374574556	G	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:136,45:0.25:181
chr7	142480126	rs374398930	C	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=8.646;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-10.003;QD=2.00;ReadPosRankSum=-2.467;SOR=1.977;set=HC	GT:AD:AF:DP	0/1:87,15:0.15:102
chr7	142480137	rs57353422	A	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.92;QD=43.11;SOR=2.173;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	142480137	.	AGAACTACTGAG	GGAAGTACTGAC,GGAAGTACTGAG	2934	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=36;MMLQ=28;MQ=54.01;NF=9,11;NR=41,57;PP=2934,976;QD=20;SC=TTCAGCCCAGAGAACTACTGA;SbPval=0.72;Source=Platypus;TC=75;TCF=16;TCR=59;TR=50,68;WE=142480188;WS=142480116;set=Platypus	GT:AF:DP	0/1:0.67:75
chr7	142480141	rs55775033	C	G	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.96;QD=45.09;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	142480148	rs10808021	G	C	2209.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.439;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=7.446;QD=39.46;ReadPosRankSum=2.387;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,52:0.93:56
chr7	142481234	rs57725689	T	C	34308.77	.	AC=2;AF=1.00;AN=2;DB;DP=1246;set=Intersection	GT:AD:AF:DP	1/1:0,1240:1.00:1240
chr7	142481376	rs73740310	T	A	11971.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,400:1.00:401
chr7	142481807	rs4726591	C	T	8824.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr7	142481867	rs59320698	C	G	11881.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr7	142482184	rs73740312	A	C	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	142494606	rs2071361	C	G	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-0.016;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:22,60:0.73:82
chr7	142495126	rs12532977	GG	AT	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;JOINED;set=Intersection	GT:AD:AF:DP	0/1:76,93:0.55:169
chr7	142495308	rs56352733	G	A	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=0.160;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:23,64:0.74:87
chr7	142498652	.	CAT	C	2015	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=69;MMLQ=28;MQ=57.18;NF=30;NR=8;PP=2015;QD=53.7368421053;SC=CTCTCTCACACATACACAGAG;SbPval=0.71;Source=Platypus;TC=122;TCF=92;TCR=30;TR=38;WE=142498661;WS=142498625;set=Platypus	GT:AD:AF:DP	1/0:84,38:0.31:122
chr7	142498673	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=26;MQ=58.42;NF=48;NR=15;PP=2962;QD=20;SC=CCCCTACCAGGACCAGACAGC;SbPval=0.77;Source=Platypus;TC=209;TCF=149;TCR=60;TR=63;WE=142498716;WS=142498663;set=Platypus	GT:AD:AF:DP	1/0:146,63:0.30:209
chr7	142498687	rs1799887	T	C	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:67,168:0.71:235
chr7	142498699	.	A	G	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.068;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-4.451;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:227,57:0.20:284
chr7	142498702	.	C	T	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-4.203;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:232,60:0.21:292
chr7	142498705	.	ATT	A	2000.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.106;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-3.733;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:243,63:0.21:306
chr7	142498708	.	A	ACC	2000.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.756;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-3.940;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:242,64:0.21:306
chr7	142498735	rs377360215	A	C	5010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-3.427;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:301,138:0.31:439
chr7	142498738	rs370415932	C	G	5050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-3.154;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:306,146:0.32:452
chr7	142498813	rs1042955	G	A	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:373,220:0.37:593
chr7	142498833	.	A	T	8046.77	.	AC=1;AF=0.500;AN=2;DP=611;set=Intersection	GT:AD:AF:DP	0/1:320,289:0.47:609
chr7	142498837	rs1042957	C	T	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=1.795;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:508,102:0.17:610
chr7	142498897	rs1042959	A	G	8013.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:332,375:0.53:707
chr7	142499071	rs1042960	T	C	8343.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:54,365:0.87:419
chr7	142499729	rs3114480	T	C	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:42,104:0.71:146
chr7	142499762	rs706	A	G	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:35,92:0.72:127
chr7	142500409	rs11327	T	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr7	142510174	rs17270	C	T	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr7	142510309	rs17269	A	G	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:51,131:0.72:182
chr7	142510350	rs17268	G	A	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:70,154:0.69:224
chr7	142510446	rs17267	G	A	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:74,153:0.67:227
chr7	142566163	rs6944571	C	G	9431.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:230,411:0.64:641
chr7	142583330	rs17881456	A	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	142657915	rs8175962	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr7	142836203	rs73170678	A	T	2477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=2.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.164;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:328,150:0.31:478
chr7	142881540	rs4726600	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr7	143017807	rs10282312	G	T	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	143028536	rs2242493	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	143029371	rs2367941	G	T	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	143029983	rs7794560	T	C	9563.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr7	143042664	.	C	T	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=0.630;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:27,55:0.67:82
chr7	143042837	rs2272251	C	T	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	143047599	rs146079110	T	TG	5699.73	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:104,209:0.67:313
chr7	143054585	rs6958357	A	G	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	143057268	rs13244040	C	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:104,72:0.41:176
chr7	143078928	rs10808025	C	G	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	143079806	rs6464546	G	A	3585.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:74,149:0.67:223
chr7	143088526	rs1131885	T	C	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:32,107:0.77:139
chr7	143088823	rs1804527	T	C	9749.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr7	143088867	rs6967117	T	C	7405.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr7	143092184	rs117651735	C	T	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:250,133:0.35:383
chr7	143093538	rs10952549	G	A	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.756;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:103,52:0.34:155
chr7	143094635	rs45497499	A	G	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr7	143095256	rs35251323	A	G	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,63:0.68:93
chr7	143097100	rs4725617	A	G	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	143105830	rs12703524	C	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=0.811;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr7	143141475	rs4595035	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	143632265	rs2240358	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr7	143632618	rs2240359	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:85,36:0.30:121
chr7	143632833	rs13229174	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:117,70:0.37:187
chr7	143633157	rs13235235	T	C	3140.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:237,160:0.40:397
chr7	143633297	rs984764	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:87,30:0.26:117
chr7	143657801	rs2072166	A	G	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:248,134:0.35:382
chr7	143701884	rs728275	C	T	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:323,148:0.31:471
chr7	143747870	rs2961144	A	G	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:306,145:0.32:451
chr7	143748098	rs6464573	G	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.373;QD=4.79;ReadPosRankSum=-1.706;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr7	143748257	rs6464574	G	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:110,62:0.36:172
chr7	143748364	rs4407791	T	C	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:171,74:0.30:245
chr7	143771536	rs6951485	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:122,53:0.30:175
chr7	143771937	rs2961135	G	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:211,91:0.30:302
chr7	143792991	rs34947817	G	A	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:216,123:0.36:339
chr7	143793162	rs34470072	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:79,41:0.34:120
chr7	143806688	rs10230228	C	A	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:209,101:0.33:310
chr7	143807304	rs10252253	T	C	2483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-1.157;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:340,144:0.30:484
chr7	143807666	rs10249545	A	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-1.749;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:87,32:0.27:119
chr7	143826603	rs2961160	G	T	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:222,110:0.33:332
chr7	143826697	rs2961161	C	G	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.693;QD=4.28;ReadPosRankSum=0.086;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:165,58:0.26:223
chr7	143826729	rs66549240	ACTT	A	1422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.680;QD=8.52;ReadPosRankSum=-1.684;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:123,44:0.26:167
chr7	143827198	rs34308692	CT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=2.642;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr7	143839408	rs1919954	C	T	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:397,179:0.31:576
chr7	143839605	rs1919953	T	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.536;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.677;QD=4.66;ReadPosRankSum=-2.113;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:137,48:0.26:185
chr7	143840056	.	G	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.517;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:124,26:0.17:150
chr7	143955741	rs199831033	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.853;SOR=0.068;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr7	143956742	rs77952084	C	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=940;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-0.859;QD=0.41;ReadPosRankSum=1.913;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:825,115:0.12:940
chr7	144015434	rs141871720	A	G	2573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=47.17;MQRankSum=-5.468;QD=26.53;ReadPosRankSum=-1.225;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:34,63:0.65:97
chr7	144015437	rs150229766	C	T	2617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=47.21;MQRankSum=-5.046;QD=25.42;ReadPosRankSum=-1.430;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:35,68:0.66:103
chr7	144061119	rs200279177	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.31;MQRankSum=-4.465;QD=10.03;ReadPosRankSum=1.283;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr7	144068163	rs146660641	T	C	1658.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.187;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.385;MLEAC=2;MLEAF=1.000;MQ=47.04;MQRankSum=-1.343;QD=25.13;ReadPosRankSum=0.557;SOR=0.412;set=HC	GT:AD:AF:DP	1/1:4,62:0.94:66
chr7	144075749	rs1635079	A	G	9619.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr7	144094613	rs1208216	G	T	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:28,67:0.71:95
chr7	144095600	rs2699503	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr7	144096068	rs2525702	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr7	144096598	rs11769847	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr7	144096839	rs757388	A	G	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr7	144098896	rs727712	T	C	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:57,92:0.62:149
chr7	144098922	rs727713	G	A	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:75,116:0.61:191
chr7	144098992	rs727714	G	A	2391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=1.477;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:70,108:0.61:178
chr7	144100595	rs2525703	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr7	144100874	rs375024030	ACGGGC	A	2272.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr7	144107279	rs1208179	A	G	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:49,120:0.71:169
chr7	144227888	rs17169931	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.384;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr7	144227919	rs17169932	C	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.782;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:74,21:0.22:95
chr7	144228318	.	A	G	131	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=2;MGOF=18;MMLQ=20;MQ=60.12;NF=6;NR=7;PP=131;QD=12.7516317344;SC=AAGTGACACCAGAAAGAGAGG;SbPval=0.55;Source=Platypus;TC=48;TCF=21;TCR=27;TR=13;WE=144228326;WS=144228308;set=Platypus	GT:AD:AF:DP	0/1:35,13:0.27:48
chr7	144462951	rs3779087	C	T	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	144532829	rs111798915	A	AG	459.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr7	144703163	rs35986454	T	G	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:142,72:0.34:214
chr7	145601352	rs6976183	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	146997203	rs2692185	T	A	2914.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:58,124:0.68:182
chr7	147183143	rs2286127	A	G	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:89,113:0.56:202
chr7	147183278	rs4015951	CAAA	C	727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.639;QD=25.99;ReadPosRankSum=-1.749;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr7	147259374	rs2074715	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr7	147335933	rs113545270	C	CT	931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=5.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=1.090;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:18,59:0.77:77
chr7	147600604	rs2538962	C	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	147914200	.	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=11.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.961;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	147926888	rs3779032	A	C	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:193,96:0.33:289
chr7	147963925	rs3801974	C	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr7	147963983	rs10248273	G	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	147964016	rs3801975	A	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:24,74:0.76:98
chr7	147964091	rs3801976	G	A	3764.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:70,166:0.70:236
chr7	148080647	rs1637841	T	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	148143136	rs2530301	A	G	7227.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	148311115	rs11434056	G	GT	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=1.103;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:87,35:0.29:122
chr7	148312382	rs6962115	T	G	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:111,83:0.43:194
chr7	148312520	rs6962292	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:107,56:0.34:163
chr7	148463860	rs1014095	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr7	148464675	rs6956231	T	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr7	148483760	rs2072406	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr7	148487329	rs933436	G	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr7	148487395	rs2007404	T	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:73,28:0.28:101
chr7	148504716	rs3217095	AG	A	562.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr7	148504854	rs55877618	A	AGACTT	1067.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-1.680;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:54,32:0.37:86
chr7	148506064	rs740949	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:202,92:0.31:294
chr7	148508833	rs2072407	A	G	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-1.415;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:181,98:0.35:279
chr7	148543525	rs10274535	A	G	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=0.222;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:216,100:0.32:316
chr7	148543693	rs3214332	TA	T	868.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.949;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:81,63:0.44:144
chr7	148705221	rs2306172	A	G	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	148778355	rs34939910	C	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr7	148801091	rs11525060	G	A	6534.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:125,272:0.69:397
chr7	148801337	rs12704061	T	C	1582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.604;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:250,101:0.29:351
chr7	148801658	rs1137432	C	T	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:78,141:0.64:219
chr7	148809451	rs6464938	T	C	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	148809520	rs10228956	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr7	148823366	rs10251621	A	G	9535.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr7	148848257	rs917122	T	C	3137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=0.716;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:58,142:0.71:200
chr7	148848358	rs917123	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:68,152:0.69:220
chr7	148851213	rs917124	G	A	3575.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:87,155:0.64:242
chr7	148863414	rs71990250	CAGCTCCA	C	4960.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:70,125:0.64:195
chr7	148873497	rs1568944	T	A	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:38,95:0.71:133
chr7	148875632	rs1202461	T	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr7	148903984	rs12537763	G	A	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr7	148904293	rs147860582	C	CAAGGTTCTTCATAAG	1194.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	148904343	rs6464946	A	T	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:45,83:0.65:128
chr7	148904624	rs7784122	C	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr7	148907849	rs10952805	G	A	4145.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:75,183:0.71:258
chr7	148909687	rs1202425	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr7	148921732	rs11547158	G	A	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:96,113:0.54:209
chr7	148936762	rs111428978	A	ACGG,ACGGCGGCGG	3707.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=99;set=Intersection	GT:AF:DP	1/2:0.76,0.24:85
chr7	148936878	rs11548535	G	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr7	148937136	rs1202427	C	A	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,79:0.68:116
chr7	148950023	rs10487889	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr7	148979323	rs61735518	C	T	11905.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:271,528:0.66:799
chr7	148982455	rs34979431	G	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr7	148985897	rs17630156	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:53,98:0.65:151
chr7	148991712	rs13236978	A	G	3677.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:78,166:0.68:244
chr7	149133916	rs11762125	C	T	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=4.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=0.986;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:123,66:0.35:189
chr7	149174542	rs4727073	G	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr7	149190098	rs13311996	T	C	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:52,91:0.64:143
chr7	149191460	rs112293204	G	A	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:62,136:0.69:198
chr7	149256086	rs1978186	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr7	149317062	rs1808231	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr7	149317216	rs354056	A	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:64,24:0.27:88
chr7	149318409	rs62490571	T	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:118,48:0.29:166
chr7	149318703	rs1723716	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:71,23:0.24:94
chr7	149321505	rs11766297	G	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	149321643	rs71532786	G	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.968;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr7	149321734	rs62490575	G	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-0.239;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	149420820	rs11462346	C	CT	1188.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:84,52:0.38:136
chr7	149422444	rs76593434	G	A	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:199,88:0.31:287
chr7	149426232	rs855757	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:48,21:0.30:69
chr7	149426305	rs11424737	G	GC	5683.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	149427409	rs709065	T	G	10990.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr7	149428812	rs62617118	G	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:142,81:0.36:223
chr7	149461487	rs73168053	T	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr7	149476666	rs57553723	G	GC	6350.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	149484798	rs62490656	C	T	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-1.218;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:165,63:0.28:228
chr7	149486574	rs855694	G	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	149498990	rs189214453	G	A	4767.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:95,205:0.68:300
chr7	149499115	rs61047652	CAT	C	1371.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:104,41:0.28:145
chr7	149499318	rs2074690	C	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	149500013	rs2074693	C	G	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:60,175:0.74:235
chr7	149500472	rs10952229	A	G	8680.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	149500992	rs4725830	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chr7	149502827	rs12668484	GC	AT	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr7	149502854	rs57242619	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr7	149503843	rs10260959	T	G	7818.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:192,348:0.64:540
chr7	149503916	rs72359812	GGATA	G	9477.73	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:125,239:0.66:364
chr7	149504116	rs4461809	C	T	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:17,67:0.80:84
chr7	149505490	rs57329750	G	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,57:0.71:80
chr7	149506195	rs73727627	C	T	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:67,141:0.68:208
chr7	149506211	rs71194663	G	GC	8503.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	149506471	rs6953743	C	T	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=0.069;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:36,51:0.59:87
chr7	149507861	rs55866915	A	C	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr7	149507964	rs55776327	C	T	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:110,192:0.64:302
chr7	149508703	rs55649542	G	C	6803.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:120,301:0.71:421
chr7	149508852	rs73727629	C	T	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:75,206:0.73:281
chr7	149508908	rs73727630	G	A	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:52,114:0.69:166
chr7	149508925	rs73727631	C	A	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:56,101:0.64:157
chr7	149509064	rs73727632	T	C	3395.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:72,153:0.68:225
chr7	149509079	rs73727633	T	C	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:71,155:0.69:226
chr7	149509512	rs73727634	C	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:44,79:0.64:123
chr7	149509691	rs73727635	G	A	6325.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:169,293:0.63:462
chr7	149509817	rs740111	G	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr7	149511985	rs10952230	A	G	10726.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:1,378:1.00:379
chr7	149512384	rs200905568	C	T	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:35,78:0.69:113
chr7	149513780	rs2074688	A	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr7	149515754	rs740113	A	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:67,96:0.59:163
chr7	149516486	rs6464034	A	G	5249.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:90,227:0.72:317
chr7	149518961	rs1008335	T	C	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:85,161:0.65:246
chr7	149519649	rs58369703	G	C	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr7	149519705	rs55857423	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr7	149519858	rs55734335	A	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr7	149520413	rs59644006	A	C	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:33,90:0.73:123
chr7	149520779	rs73727641	C	T	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:81,113:0.58:194
chr7	149521393	rs10232371	T	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:41,73:0.64:114
chr7	149522366	rs2074697	T	G	4881.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:99,213:0.68:312
chr7	149523195	rs78492471	C	G	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:249,123:0.33:372
chr7	149523277	rs1004200	A	G	4448.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:109,205:0.65:314
chr7	149524772	rs55857326	G	A	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr7	149525888	.	G	T	729.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:63,35:0.36:98
chr7	149528139	rs35876030	C	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-2.008;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr7	149543219	rs34196240	C	CT	955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.018;QD=6.68;ReadPosRankSum=2.685;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:72,71:0.50:143
chr7	149543269	rs62621204	C	T	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:65,87:0.57:152
chr7	149544681	rs10569456	GGTGTGTGTGT	G	484.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.29;ReadPosRankSum=2.122;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr7	149556518	rs4725833	C	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:84,44:0.34:128
chr7	149558409	rs2240361	G	C	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:142,83:0.37:225
chr7	149559273	rs2074700	C	T	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:241,137:0.36:378
chr7	149559465	rs2074701	C	T	4402.77	.	AC=1;AF=0.500;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	0/1:563,255:0.31:818
chr7	149561049	rs3857764	C	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.073;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr7	149572842	rs10240203	G	C	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:177,100:0.36:277
chr7	149575707	rs6946997	C	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr7	149575725	rs6947011	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr7	149575747	rs5888369	TG	T	920.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr7	149575884	rs10246226	T	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:117,63:0.35:180
chr7	149576818	rs7785847	A	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:128,54:0.30:182
chr7	149589343	rs2626759	G	A	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.31;QD=28.85;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	149606881	.	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=48.23;MQRankSum=-0.811;QD=5.70;ReadPosRankSum=-0.829;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr7	149606918	rs200320073	T	TA	101.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.03;MQRankSum=-2.838;QD=8.48;ReadPosRankSum=1.795;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr7	149744835	rs141816877	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	149981774	rs143645753	G	A	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.456;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.21;MQRankSum=-0.204;QD=7.42;ReadPosRankSum=1.127;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr7	149981830	rs4725334	T	G	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr7	149983565	rs28634863	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=7.274;MLEAC=1;MLEAF=0.500;MQ=50.97;MQRankSum=-3.287;QD=0.19;ReadPosRankSum=-0.521;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:167,23:0.12:190
chr7	149986773	rs2286443	T	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,37:0.35:105
chr7	149990080	rs149246619	C	T	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=47.17;MQRankSum=-1.123;QD=2.04;ReadPosRankSum=-1.951;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:84,20:0.19:104
chr7	149990318	.	GT	G	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=6.166;MLEAC=1;MLEAF=0.500;MQ=53.60;MQRankSum=-7.771;QD=3.95;ReadPosRankSum=-0.465;SOR=1.407;set=HC	GT:AD:AF:DP	0/1:66,40:0.38:106
chr7	149992184	rs2261646	C	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:34,9:0.21:43
chr7	150069548	rs187957325	C	G	2543.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:311,149:0.32:460
chr7	150093701	rs940453	A	C	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	150094853	rs7780011	G	A	7668.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr7	150163837	rs2140595	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=1.838;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:63,29:0.32:92
chr7	150168058	rs111800874	A	AGAAT	1780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=2.300;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:107,51:0.32:158
chr7	150171710	rs60114833	T	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.107;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.625;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:60,31:0.34:91
chr7	150217569	.	C	T	2351.77	.	AC=1;AF=0.500;AN=2;DP=175;set=Intersection	GT:AD:AF:DP	0/1:67,105:0.61:172
chr7	150384048	.	A	AAAG	798.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.01;QD=29.58;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	150384193	.	CGTGT	C	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=24.65;ReadPosRankSum=1.116;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr7	150488616	rs2302479	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr7	150488840	rs141812679	C	CA	141.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr7	150490376	rs2072443	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:65,31:0.32:96
chr7	150490431	rs2072442	C	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr7	150490797	rs72471023	GGACA	G	586.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr7	150491084	rs3173833	T	G	3894.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:441,227:0.34:668
chr7	150491851	rs61057705	T	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:210,113:0.35:323
chr7	150491995	rs145375921	CCACACACA	C	1074.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.107;QD=13.27;ReadPosRankSum=-0.483;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr7	150493495	rs11546671	G	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,59:0.56:105
chr7	150498809	rs1127958	G	A	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:90,41:0.31:131
chr7	150498836	rs2075079	C	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr7	150499164	.	T	TTTCTC	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-2.593;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr7	150499267	rs12668797	C	A	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:165,99:0.38:264
chr7	150500356	rs741068	T	C	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.707;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:78,41:0.34:119
chr7	150500455	rs741067	A	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:100,37:0.27:137
chr7	150500520	rs741066	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:86,30:0.26:116
chr7	150500729	rs741064	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.309;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:71,46:0.39:117
chr7	150501516	rs9088	A	G	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-0.998;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:182,61:0.25:243
chr7	150502016	rs1044608	C	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	150502075	rs1044616	G	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	150555810	rs45455308	G	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=3.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-1.918;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:140,60:0.30:200
chr7	150556002	rs1049748	T	C	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:166,89:0.35:255
chr7	150556055	rs6943147	CG	GC	8932.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	150556803	rs55671932	A	G	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.770;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr7	150557390	rs45615934	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.039;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr7	150558366	rs12539	C	T	1602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.574;QD=5.40;ReadPosRankSum=1.167;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:211,86:0.29:297
chr7	150558444	rs34090933	G	GCA	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr7	150647527	.	C	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.512;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr7	150654622	rs11462566	A	AG	1495.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	150672162	rs11410979	T	TC	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	150695726	rs1549758	T	C	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	150696008	rs1007311	A	G	4598.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	150696111	rs1799983	T	G	13141.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:1,489:1.00:490
chr7	150698879	rs1800780	A	G	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	150703915	rs2853796	G	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	150706383	rs753482	C	A	9285.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:11,377:0.97:388
chr7	150706436	rs142498418	G	GC	1264.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:69,52:0.43:121
chr7	150707488	rs743507	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr7	150708089	rs891512	A	G	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	150708850	rs2256314	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr7	150713902	rs11393607	G	GC	2355.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	150715817	rs1835428	A	G	8993.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr7	150715947	rs7804893	T	C	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-2.177;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:132,49:0.27:181
chr7	150720308	rs12666075	G	T	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:51,77:0.60:128
chr7	150720902	rs13307588	A	G	27012.77	.	AC=2;AF=1.00;AN=2;DB;DP=1013;set=Intersection	GT:AD:AF:DP	1/1:0,1009:1.00:1009
chr7	150725722	rs2303922	A	C	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:33,77:0.70:110
chr7	150725972	rs11769256	C	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr7	150730220	rs10952299	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=0.275;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr7	150730999	rs4148844	G	A	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:128,73:0.36:201
chr7	150731338	rs2303923	G	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	150733025	rs2303926	T	A	10367.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:208,432:0.68:640
chr7	150734380	rs35900662	T	C	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:80,110:0.58:190
chr7	150739054	rs56198402	G	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:113,68:0.38:181
chr7	150742388	rs61741011	A	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:98,53:0.35:151
chr7	150747746	rs2288645	A	G	22754.77	.	AC=2;AF=1.00;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	1/1:0,860:1.00:860
chr7	150747937	rs11977275	C	A	10109.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:203,445:0.69:648
chr7	150748771	rs58134191	T	C	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr7	150751590	rs2069459	C	A	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr7	150752066	rs891507	T	C	18067.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,693:1.00:693
chr7	150752982	rs2069454	C	G	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.559;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:116,45:0.28:161
chr7	150753769	rs2069450	A	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:154,68:0.31:222
chr7	150759219	rs3217354	CGTGTGTGAGT	C	2553.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	150760076	rs34403003	G	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.02;ReadPosRankSum=0.948;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr7	150761150	rs6464122	C	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	150761548	rs2303930	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr7	150761680	rs1050702	C	A	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-0.615;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:57,90:0.61:147
chr7	150765065	rs2229550	T	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	150765236	rs12703112	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr7	150767184	rs35859353	G	A	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:301,131:0.30:432
chr7	150768786	rs2303937	G	A	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:85,167:0.66:252
chr7	150772917	rs11766855	C	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,64:0.71:90
chr7	150773072	rs2303939	G	C	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:82,170:0.67:252
chr7	150773807	rs7262	A	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr7	150775306	rs2303942	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr7	150783756	.	TGCCGCC	T	881.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;QD=38.34;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr7	150783900	.	C	CG	673.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	150783903	.	T	G	772.77	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.30;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	150783906	.	C	G	1006.77	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.94;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	150783908	.	C	CG	1087.73	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	150783911	.	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	150783917	.	T	G	1636.77	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.80;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	150783919	.	GTCT	G	778.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.359;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.34;ReadPosRankSum=-1.425;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:3,29:0.91:32
chr7	150783922	.	T	TGGGG	1788.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.60;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	150812493	rs6971966	G	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.270;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr7	150814340	rs200527701	T	TG	1239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=9.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.627;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:30,49:0.62:79
chr7	150825567	rs2288650	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.429;SOR=1.749;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr7	150884266	rs372716545	CAG	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.872;QD=1.01;ReadPosRankSum=-1.717;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:236,34:0.13:270
chr7	150916114	rs35656219	CAGG	C	1284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.239;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:91,38:0.29:129
chr7	150916228	rs6949587	G	A	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=4.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=1.275;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:128,46:0.26:174
chr7	150918914	rs4726007	G	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.386;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.941;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr7	150921296	.	A	AT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.378;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:204,44:0.18:248
chr7	150921950	rs6464133	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:177,83:0.32:260
chr7	150931268	rs2608293	C	G	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.206;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:288,111:0.28:399
chr7	150934162	rs2446065	G	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr7	150934975	rs2487154	C	G	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:209,105:0.33:314
chr7	150937377	rs61667463	C	CG	2094.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;MQ=60.34;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	150937727	rs143664153	T	TGC	790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.978;QD=19.29;ReadPosRankSum=0.314;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	150939193	rs4725398	A	G	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr7	150939359	rs219227	C	T	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	150939396	rs219228	C	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	150940657	rs122815	T	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	150940867	rs219229	G	A	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:34,81:0.70:115
chr7	151038958	rs2142172	T	C	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-1.974;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:67,37:0.36:104
chr7	151049002	rs3838706	A	AAC	1418.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr7	151078371	rs2286417	C	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr7	151078719	rs4726019	C	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr7	151078735	rs4141455	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr7	151078845	.	G	A	274	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=3;HapScore=1;MGOF=14;MMLQ=18;MQ=59.43;NF=21;NR=4;PP=274;QD=12.3508485019;SC=GCGGGCGCAGGGGCGGGCGTC;SbPval=0.97;Source=Platypus;TC=91;TCF=60;TCR=31;TR=25;WE=151078853;WS=151078835;set=Platypus	GT:AD:AF:DP	1/0:66,25:0.27:91
chr7	151164348	rs17635434	G	A	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	151168415	rs35526149	CAAT	C	2053.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	151168534	rs6956899	G	A	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	151195328	rs11772458	G	C	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	151216353	rs6948477	G	A	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-0.839;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr7	151254175	rs8961	T	C	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	151254445	rs764801	T	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	151254462	rs764800	G	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	151267397	rs2302530	G	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr7	151292395	rs35348247	A	AT	1337.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr7	151432869	rs1547470	T	C	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	151483445	rs12671980	A	G	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:55,89:0.62:144
chr7	151506155	rs6464173	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	151573580	rs77902041	G	A	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:37,75:0.67:112
chr7	151664698	rs61217445	T	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.29;ReadPosRankSum=0.263;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr7	151668063	rs35868297	A	G	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-1.107;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,48:0.69:70
chr7	151668180	.	C	CTAGATAGA	353	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=20;MQ=60.0;NF=0;NR=5;PP=353;QD=71.6;SC=CTCTCATTCTCTAGATAGATA;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=5;WE=151668188;WS=151668170;set=Platypus	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	151668224	rs58859718	A	AT	202.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.903;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.27;ReadPosRankSum=1.668;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr7	151668225	rs1919521	A	T,AGATAGAT	311.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	1/2:0.40,0.60:10
chr7	151680072	rs6960270	T	C	9217.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr7	151684168	rs4726127	C	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	151684427	rs28367452	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr7	151723022	rs72200904	TGCG	T	891.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:4,31:0.89:35
chr7	151818777	rs967093	T	C	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	151845243	.	C	T	557.77	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:90,36:0.29:126
chr7	151864422	.	T	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=11.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.059;SOR=1.710;set=HC	GT:AD:AF:DP	0/1:193,31:0.14:224
chr7	151944878	.	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.178;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.20;MQRankSum=-0.525;QD=5.22;ReadPosRankSum=-0.750;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr7	151945007	rs137949498	C	T	3960.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:215,183:0.46:398
chr7	151945071	rs150073007	G	GT	1633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-0.192;QD=2.54;ReadPosRankSum=1.676;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:544,99:0.15:643
chr7	151945140	rs57648310	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=4.120;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-3.136;QD=0.50;ReadPosRankSum=1.108;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:491,72:0.13:563
chr7	151945167	rs2537264	G	T	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=14.806;MLEAC=1;MLEAF=0.500;MQ=53.64;MQRankSum=-5.298;QD=4.45;ReadPosRankSum=-2.033;SOR=1.662;set=HC	GT:AD:AF:DP	0/1:382,134:0.26:516
chr7	151945204	rs4024453	G	A	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.032;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=184.477;MLEAC=1;MLEAF=0.500;MQ=51.93;MQRankSum=-14.519;QD=3.82;ReadPosRankSum=-0.746;SOR=7.327;set=HC	GT:AD:AF:DP	0/1:316,82:0.21:398
chr7	151962168	rs138908625	C	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.647;ClippingRankSum=0.000;DB;DP=1017;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=49.04;MQRankSum=-12.615;QD=0.44;ReadPosRankSum=-1.497;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:875,142:0.14:1017
chr7	151970705	.	A	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-1.079;QD=1.62;ReadPosRankSum=-0.486;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:100,17:0.15:117
chr7	151970777	rs201753635	G	A	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-1.347;QD=1.83;ReadPosRankSum=-1.093;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:379,84:0.18:463
chr7	151970856	rs10454320	T	A	11034.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:326,431:0.57:757
chr7	151970859	rs149992209	C	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;ClippingRankSum=0.000;DB;DP=765;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.42;MQRankSum=-5.048;QD=0.46;ReadPosRankSum=2.051;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:662,101:0.13:763
chr7	151970931	rs56850341	G	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:258,110:0.30:368
chr7	151970977	rs200020144	C	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:106,91:0.46:197
chr7	152055766	.	G	GA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=3.957;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.304;QD=1.55;ReadPosRankSum=2.377;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr7	152142497	rs62492060	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr7	152143744	rs6953943	A	G	4796.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:119,213:0.64:332
chr7	152511598	rs112910296	C	T	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=7.745;MLEAC=1;MLEAF=0.500;MQ=53.53;MQRankSum=-7.192;QD=2.58;ReadPosRankSum=1.593;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:118,27:0.19:145
chr7	152513769	rs116164729	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=7.543;MLEAC=1;MLEAF=0.500;MQ=52.41;MQRankSum=-3.625;QD=1.45;ReadPosRankSum=-1.638;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr7	152517547	rs147579589	C	T	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=-3.072;QD=5.27;ReadPosRankSum=1.236;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr7	152517552	rs114295156	G	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=-3.072;QD=5.27;ReadPosRankSum=1.403;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr7	152517560	rs201127372	G	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=53.70;MQRankSum=-3.478;QD=5.56;ReadPosRankSum=0.284;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr7	152517622	rs114707951	T	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.416;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-6.509;QD=0.86;ReadPosRankSum=0.754;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:38,6:0.14:44
chr7	152520731	rs3864524	T	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr7	152549107	rs6944646	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.900;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr7	152550499	rs4726215	T	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr7	153749753	rs1974615	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr7	153749772	rs374262699	TTGC	T	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.520;QD=7.32;ReadPosRankSum=-2.295;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr7	153749805	rs4015718	CT	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.155;QD=4.25;ReadPosRankSum=1.060;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr7	153750096	rs2533730	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-5.412;QD=2.78;ReadPosRankSum=-0.349;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr7	153750160	rs199977459	TC	T	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.783;QD=13.15;ReadPosRankSum=-0.791;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr7	153750319	.	G	GC	38.70	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	154143443	rs2291538	C	T	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:49,69:0.58:118
chr7	154172154	rs3750042	G	A	1897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=1.069;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:62,85:0.58:147
chr7	154237842	rs28645456	T	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	154379234	rs11243354	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr7	154379517	rs35392762	C	T	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:267,126:0.32:393
chr7	154379739	rs75213895	C	T	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:189,86:0.31:275
chr7	154429560	rs11243339	C	T	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	154429657	rs6972501	T	C	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	154461112	rs3807218	A	G	6727.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	154461248	rs10580981	TTGTGTG	T	2027.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	154461291	rs4960721	G	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	154564677	rs11291131	CA	C	829.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.306;QD=10.00;ReadPosRankSum=-0.742;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:27,56:0.67:83
chr7	154596517	rs2280659	G	A	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	154598908	rs2293357	A	G	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	154645406	rs6962284	A	G	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr7	154645419	rs145928686	G	GTTTTC	1516.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.578;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:108,41:0.28:149
chr7	154664438	rs369283319	C	T	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:289,130:0.31:419
chr7	154667628	rs2293353	A	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=1.446;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr7	154667643	rs2230064	G	A	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.117;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:80,36:0.31:116
chr7	154672551	rs4960632	G	C	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr7	154672646	rs3817522	T	C	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:47,104:0.69:151
chr7	154672679	rs3817520	A	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:45,88:0.66:133
chr7	154672717	rs3817519	G	A	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=0.521;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:36,68:0.65:104
chr7	154672839	rs3817517	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr7	154679447	rs940378	G	A	10010.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr7	154681142	rs11335725	CT	C	635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=5.185;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.552;QD=3.15;ReadPosRankSum=-0.685;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:116,86:0.43:202
chr7	154684153	rs3734960	T	C	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:96,198:0.67:294
chr7	154720259	rs11543936	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	154735950	rs930436	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	154738409	rs3501	T	C	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:79,168:0.68:247
chr7	154748908	rs3817480	G	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	154751774	rs2272174	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	154759671	rs893942	T	C	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	154760369	rs935037	A	G	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	154760666	rs61752011	C	T	4193.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:64,172:0.73:236
chr7	154760889	rs3800580	A	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr7	154785362	rs306281	A	G	10241.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr7	154862188	rs3823534	A	G	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	154862508	rs3734967	A	G	10296.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr7	154862591	rs1800883	G	C	27947.77	.	AC=2;AF=1.00;AN=2;DB;DP=1031;set=Intersection	GT:AD:AF:DP	1/1:0,1028:1.00:1028
chr7	154863467	rs2241859	G	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	154875780	rs1730208	G	A	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	154876342	rs980442	T	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	154988908	rs7458114	C	A	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.941;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:58,35:0.38:93
chr7	154989054	rs2317164	C	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.209;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:80,30:0.27:110
chr7	154989807	rs73176654	T	C	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr7	154990003	rs12532373	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:261,117:0.31:378
chr7	155095452	rs79984271	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr7	155095686	.	CTT	C	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.900;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr7	155150472	rs3922604	G	A	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	155150560	rs6605563	A	G	11524.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	155150602	rs6605562	T	C	13717.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr7	155150765	rs7456618	C	T	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:401,197:0.33:598
chr7	155150870	rs67400545	A	G	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:56,106:0.65:162
chr7	155251183	rs77846527	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:124,48:0.28:172
chr7	155255385	rs12674067	C	T	5596.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:144,252:0.64:396
chr7	155295804	rs35244674	GA	G	4599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=4.912;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.559;QD=10.70;ReadPosRankSum=-2.255;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:94,336:0.78:430
chr7	155437475	rs7786826	T	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	155465422	rs7811556	C	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	155465438	.	CAAAAAAA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.057;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr7	155473255	rs147986860	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=3.106;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr7	155499799	rs4716543	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr7	155500084	rs10278893	A	G	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:103,187:0.64:290
chr7	155503920	rs7800753	A	T	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:223,106:0.32:329
chr7	155530363	rs2249337	A	G	3438.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:68,140:0.67:208
chr7	155530954	rs2178428	T	C	9812.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:222,412:0.65:634
chr7	155531080	rs3735576	A	G	6315.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:216,295:0.58:511
chr7	155532361	rs3801906	G	A	2986.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:57,131:0.70:188
chr7	155559403	rs2272479	A	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr7	155595470	rs112020900	A	ATTATTC	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr7	155598879	rs1233554	A	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	155599300	rs1233555	C	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,86:0.70:122
chr7	155599630	rs9333616	CGCCCCCACGTTGCCCTCCACTTCTA	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.476;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr7	155747865	rs7798508	C	G	3676.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:45,142:0.76:187
chr7	155747907	rs7810074	T	C	5898.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:76,252:0.77:328
chr7	155749951	rs35655547	C	T	3089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=1.794;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:113,153:0.58:266
chr7	155750033	rs10256182	A	G	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	155755336	rs7807731	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:65,26:0.29:91
chr7	155755826	rs2007015	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	155757502	rs1551630	T	C	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	156433243	rs7788200	C	G	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	156436769	rs7804211	C	T	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	156468377	rs2886380	GC	CA	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	156468656	rs2365513	G	A	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	156468939	rs140092411	G	GTGTA	4072.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:3,97:0.97:100
chr7	156469096	rs2302149	C	T	12774.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,466:1.00:466
chr7	156469133	rs2302147	C	G	12086.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr7	156469179	rs2302146	C	T	9895.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	156469190	rs2302145	A	G	9724.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr7	156473779	rs71838136	T	TA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.457;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr7	156476683	rs3735186	T	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	156529062	rs10640672	C	CAGT	3180.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	156549195	rs17571054	G	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	156626273	.	ATTG	A,AGAACCAGTGTTG	772.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=17;set=Intersection	GT:AF:DP	1/1:1.00:17
chr7	156626277	.	G	GAACCAGTGCTAA	772.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	156685519	rs200299453	G	GC	1264.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	156685540	.	C	CG	2126.73	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.02;QD=45.25;SOR=3.306;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	156685545	.	A	C	2135.77	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.99;QD=42.72;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	156685545	.	AC	GC	1877	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5121,1.0000;HP=4;HapScore=1;MGOF=44;MMLQ=24;MQ=61.62;NF=25,13;NR=7,5;PP=1163,1877;QD=37.0625;SC=GGGTCCGGGGACCGGGGGCCC;SbPval=0.72;Source=Platypus;TC=35;TCF=26;TCR=9;TR=32,18;WE=156685563;WS=156685530;set=Platypus	GT:AD:AF:DP	0/1:63,18:0.22:81
chr7	156685545	.	AC	ACC	1877	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5121,1.0000;HP=4;HapScore=1;MGOF=44;MMLQ=24;MQ=61.62;NF=25,13;NR=7,5;PP=1163,1877;QD=37.0625;SC=GGGTCCGGGGACCGGGGGCCC;SbPval=0.72;Source=Platypus;TC=35;TCF=26;TCR=9;TR=32,18;WE=156685563;WS=156685530;set=Platypus	GT:AD:AF:DP	0/1:3,32:0.91:35
chr7	156685590	rs117769123	G	A	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	156742501	rs6969990	C	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.00;SOR=2.876;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	156742749	rs6969196	G	A	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	156742796	rs6952214	A	C	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	156742965	rs61734937	G	C	11124.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	156743264	rs61747373	C	A	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	156746701	rs61122657	T	C	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	156746727	rs58846177	T	C	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	156754981	rs3750131	T	C	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	156755350	rs12672076	T	C	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	156802526	.	AGCC	A	43.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,3:0.17:18
chr7	156931895	.	A	T	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=2.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-0.362;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:112,62:0.36:174
chr7	156932105	rs59178327	C	T	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	156961716	rs35192251	C	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	156962874	rs6956046	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	156967831	.	C	CTTTTTT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=10.561;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=-0.875;QD=7.98;ReadPosRankSum=-1.899;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr7	156971581	rs870745	T	C	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	156974354	rs17646047	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	156994331	rs374923033	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.62;ReadPosRankSum=-1.114;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr7	156994544	rs75125615	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:97,44:0.31:141
chr7	157000176	rs2301914	T	C	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	157049530	rs1182373	T	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr7	157049809	rs2301946	G	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:108,50:0.32:158
chr7	157151234	rs3802100	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr7	157156151	rs3802096	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr7	157159423	rs3779591	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr7	157162068	rs9692250	T	C	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:72,124:0.63:196
chr7	157162103	rs12672981	A	G	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:55,86:0.61:141
chr7	157208617	rs1009135	C	T	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	157234112	rs11977865	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:97,50:0.34:147
chr7	157234787	rs12698061	G	T	1658.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;MQRankSum=-0.109;QD=37.70;ReadPosRankSum=1.437;SOR=0.295;set=HC	GT:AD:AF:DP	1/1:1,43:0.98:44
chr7	157234816	rs12698062	A	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=38.99;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	157234912	rs12669046	A	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.96;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	157235034	.	T	G	85	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=2;MGOF=25;MMLQ=20;MQ=42.64;NF=1;NR=4;PP=85;QD=23.9542425094;SC=GCTCTTCCGGTCGGCGCCTGA;SbPval=0.59;Source=Platypus;TC=6;TCF=1;TCR=5;TR=5;WE=157235042;WS=157235024;set=Platypus	GT:AD:AF:DP	1/1:1,5:0.83:6
chr7	157235229	rs6974109	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;QD=24.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	157235364	rs6950818	C	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	157261201	rs4716743	T	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:90,44:0.33:134
chr7	157261258	rs4716744	C	T	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:201,97:0.33:298
chr7	157261275	rs4716745	C	T	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:244,117:0.32:361
chr7	157261292	rs4716746	A	G	4354.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:279,131:0.32:410
chr7	157261945	rs2109830	A	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr7	157261953	rs11449038	C	CG	3342.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	157262170	rs7801907	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:101,50:0.33:151
chr7	157262226	rs7778458	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr7	157262920	rs7806450	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	157263015	rs7784276	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=0.000;QD=10.61;ReadPosRankSum=1.068;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	157263025	rs7783247	GA	CG	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=0.540;QD=9.05;ReadPosRankSum=-0.809;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr7	157263349	.	C	T	160	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=1;MGOF=33;MMLQ=21;MQ=58.19;NF=11;NR=8;PP=160;QD=10.2511164499;SC=GTGTCCGGCGCTGGCCTGCAT;SbPval=0.51;Source=Platypus;TC=63;TCF=38;TCR=25;TR=19;WE=157263357;WS=157263339;set=Platypus	GT:AD:AF:DP	0/1:44,19:0.30:63
chr7	157263370	.	T	C	289	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=20;MQ=58.35;NF=17;NR=11;PP=289;QD=11.563257591;SC=TGGGTGTGTCTGTGTGTCCGG;SbPval=0.55;Source=Platypus;TC=74;TCF=45;TCR=29;TR=28;WE=157263378;WS=157263360;set=Platypus	GT:AD:AF:DP	1/0:46,28:0.38:74
chr7	157263391	.	G	T	346	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=2;MGOF=22;MMLQ=24;MQ=58.15;NF=20;NR=14;PP=346;QD=11.1991533102;SC=CGCTGGCCTGGGTTGGGTGTG;SbPval=0.5;Source=Platypus;TC=88;TCF=53;TCR=35;TR=34;WE=157263399;WS=157263381;set=Platypus	GT:AD:AF:DP	0/1:54,34:0.39:88
chr7	157263410	.	C	T	431	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=2;MGOF=21;MMLQ=23;MQ=58.39;NF=21;NR=15;PP=431;QD=12.9380892374;SC=TGTCCGTGTGCCCGGTGCTGG;SbPval=0.54;Source=Platypus;TC=88;TCF=52;TCR=36;TR=36;WE=157263418;WS=157263400;set=Platypus	GT:AD:AF:DP	0/1:52,36:0.41:88
chr7	157263532	rs7785035	C	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.561;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:33,24:0.42:57
chr7	157318407	.	TACTGTCGG	CACCGTCTG,CACTGTCGC	469	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=36;MMLQ=24;MQ=58.59;NF=4,11;NR=0,4;PP=315,469;QD=94.6169687156;SC=GGGCCGTGTGTACTGTCGGAG;SbPval=1.0;Source=Platypus;TC=28;TCF=20;TCR=8;TR=4,15;WE=157318423;WS=157318397;set=Platypus	GT:AF:DP	0/1:0.14:28
chr7	157318438	rs11761852	G	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr7	157333376	rs1122307	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,40:0.36:111
chr7	157333542	rs1124400	C	T	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:50,72:0.59:122
chr7	157341556	rs3214337	GC	G	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr7	157361564	rs7789467	C	T	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:64,146:0.70:210
chr7	157361734	rs221294	T	C	11502.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr7	157367205	rs146248159	T	TGA	1093.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=-1.044;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:29,41:0.59:70
chr7	157369564	rs221301	C	G	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	157370645	rs736940	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr7	157370688	rs122004	C	G	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	157396697	rs17853260	G	A	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:131,178:0.58:309
chr7	157406819	rs10247739	A	C	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-1.113;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:26,67:0.72:93
chr7	157414064	.	G	A	1696	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=18;MMLQ=27;MQ=59.51;NF=74;NR=33;PP=1696;QD=16.175431893;SC=AGGTCAGCACGGCCAGGGAGC;SbPval=0.38;Source=Platypus;TC=170;TCF=122;TCR=48;TR=107;WE=157414072;WS=157414054;set=Platypus	GT:AD:AF:DP	1/0:63,107:0.63:170
chr7	157462117	rs5888726	G	GCA	871.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:83,36:0.30:119
chr7	157462425	rs755703	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr7	157462464	rs1079359	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr7	157691523	rs56112490	T	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr7	157800838	rs143545915	AGT	A	4695.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	157800899	rs12666418	C	T	8139.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr7	157903478	rs3800861	A	G	5687.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:184,264:0.59:448
chr7	157903504	rs3800860	C	T	5168.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:179,245:0.58:424
chr7	157903538	rs1130501	A	G	4137.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:143,193:0.57:336
chr7	157929294	rs3800857	G	A	6673.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:140,295:0.68:435
chr7	157959620	rs10277232	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	157959636	rs1130498	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr7	157959879	rs1130497	C	T	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:113,67:0.37:180
chr7	157959895	rs1130496	C	T	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:116,61:0.34:177
chr7	157959911	rs1130495	A	G	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:130,57:0.30:187
chr7	157997673	rs17847433	C	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	158055796	.	ACACACACACTG	A	2982	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=2;HapScore=1;MGOF=20;MMLQ=23;MQ=59.87;NF=71;NR=81;PP=2982;QD=20;SC=CACACACTGCACACACACACT;SbPval=0.45;Source=Platypus;TC=174;TCF=79;TCR=95;TR=152;WE=158055822;WS=158055786;set=Platypus	GT:AD:AF:DP	1/1:22,152:0.87:174
chr7	158055802	.	ACAC	A	10980.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	158055806	.	TGCACACAC	T	10982.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.92;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	158055850	rs77811094	TCA	T	5822.73	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:367,179:0.33:546
chr7	158055974	rs369131222	TCA	T	4549.73	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:245,128:0.34:373
chr7	158325503	rs4909237	C	T	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:96,41:0.30:137
chr7	158334101	rs10623822	T	TTA	512.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr7	158380436	rs183488561	G	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr7	158424508	rs11973267	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	158438186	rs2290393	G	A	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	158444975	rs1466210	T	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	158445267	rs5888763	C	CA	249.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	158450965	rs12533939	A	T	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	158455089	rs4484634	G	A	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	158456710	rs10227735	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	158457095	rs2290392	G	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	158473339	rs2305470	G	T	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	158476148	rs6969248	G	A	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr7	158528158	rs3816461	C	G	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	158528170	rs7787974	G	A	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	158534163	rs66689505	T	TG	639.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	158552331	rs896859	C	G	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	158552398	rs896860	C	T	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	158555706	rs844521	C	T	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	158560621	rs2602542	A	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	158566138	rs842447	T	C	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	158566217	rs842448	C	T	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	158586138	rs2602552	T	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	158590512	rs2788501	T	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	158590547	rs11404991	G	GA	964.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=-1.127;SOR=0.384;set=HC	GT:AD:AF:DP	1/1:9,56:0.86:65
chr7	158591851	rs2709855	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	158672476	rs2709859	C	G	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	158715219	rs2730238	A	G	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	158718793	rs2527188	A	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	158719084	rs2244789	C	T	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	158723014	rs2730241	T	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	158726798	rs34181207	T	TC	2659.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	158727015	rs35962377	C	CT	3330.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	158727276	rs2657331	T	A	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	158727303	rs2657332	G	T	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	158738611	rs2527201	G	T	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	158827326	rs2071624	G	A	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:70,90:0.56:160
chr7	158827401	rs1017033	A	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	158827414	rs2071623	T	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr7	158829285	rs2730223	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	158835631	rs2540353	A	G	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	158851234	rs2098349	T	G	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	158851804	rs2730257	C	T	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	158935029	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.912;QD=0.35;ReadPosRankSum=0.615;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:71,16:0.18:87
chr7	158935333	rs439204	G	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	183002	rs74482409	G	A	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:74,154:0.68:228
chr8	194884	rs2906331	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr8	196274	rs2072174	T	G	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,62:0.79:78
chr8	363032	rs143072661	G	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr8	363192	rs10090550	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-6.235;QD=1.89;ReadPosRankSum=0.047;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr8	401493	rs6651443	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chr8	441457	rs1064416	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	494658	rs71202629	GGGCGGC	G	1048.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr8	494804	rs10105131	C	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr8	565232	rs1669694	C	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.265;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:114,33:0.22:147
chr8	566460	.	C	G	48	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=28;MQ=60.0;NF=3;NR=1;PP=48;QD=20.6928031368;SC=GCGGATTCAGCGCTGGCCAAC;SbPval=0.8;Source=Platypus;TC=18;TCF=12;TCR=6;TR=4;WE=566468;WS=566450;set=Platypus	GT:AD:AF:DP	0/1:14,4:0.22:18
chr8	566619	rs68122960	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.239;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr8	607380	rs1669658	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	607566	rs62486240	C	T	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	607766	rs4735812	C	G	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	608018	rs6993769	C	T	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	608034	rs10090260	T	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.97;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	608279	rs1703925	A	G	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	609834	.	CATCCTGGGGAGGGGGTGACCATCGAGATCTCCAGTGTGCACTGAAT	C	2900	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=1;HapScore=1;MGOF=10;MMLQ=20;MQ=61.58;NF=27;NR=41;PP=2900;QD=20;SC=GTGCACTGACCATCCTGGGGA;SbPval=0.47;Source=Platypus;TC=78;TCF=30;TCR=48;TR=68;WE=609887;WS=609824;set=Platypus	GT:AD:AF:DP	1/1:10,68:0.87:78
chr8	618728	rs2271263	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	623156	rs6559065	G	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	623593	rs55783038	G	A	16292.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr8	642357	rs1703896	A	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr8	665858	rs1869074	C	T	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.218;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:46,58:0.56:104
chr8	676339	rs12549459	A	G	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:113,172:0.60:285
chr8	681206	rs11781283	G	C	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.496;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:49,101:0.67:150
chr8	947830	rs9650538	A	C	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:22,68:0.76:90
chr8	1574836	rs73671260	T	C	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:127,58:0.31:185
chr8	1574848	rs73671261	C	T	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:151,67:0.31:218
chr8	1616718	rs2235112	A	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:98,63:0.39:161
chr8	1618119	rs4876119	A	G	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr8	1626906	rs2293906	G	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=1.242;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr8	1626906	.	GGG	TGA	38	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=38;QD=45.7339374311;SC=TTCAAGTGAAGGGAAATAAAT;SbPval=1.0;Source=Platypus;TC=8;TCF=1;TCR=7;TR=2;WE=1626916;WS=1626896;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr8	1626908	rs2293907	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.40;ReadPosRankSum=0.566;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr8	1728292	rs12546965	T	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr8	1749388	rs7017381	C	T	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	1749410	rs7003112	T	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	1749513	rs12541297	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	1765425	rs61388742	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr8	1791433	rs11136431	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr8	1791638	rs11136432	T	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	1791663	rs11136433	G	A	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.37;ReadPosRankSum=-1.001;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr8	1791672	rs11136434	C	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.44;ReadPosRankSum=-1.397;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr8	1791685	rs11136435	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.21;ReadPosRankSum=0.615;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr8	1806041	.	G	GATCT	316.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.69;ReadPosRankSum=0.385;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr8	1806045	rs28650492	G	T	339	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.82;ReadPosRankSum=1.036;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr8	1806333	rs56203106	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:9,26:0.74:35
chr8	1814588	rs67268874	GACAC	G	869.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.04;QD=37.81;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	1817314	rs7003839	G	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr8	1817367	rs7003969	G	A	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:45,71:0.61:116
chr8	1817602	rs144252379	A	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr8	1824596	rs4875944	G	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr8	1830928	rs4543586	A	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=1.679;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr8	1833990	rs2294032	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr8	1842401	.	A	G	92.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr8	1846562	rs755543	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:52,70:0.57:122
chr8	1870956	rs4242549	G	A	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	1874732	rs17064390	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:31,58:0.65:89
chr8	1876631	rs2272611	C	T	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:41,87:0.68:128
chr8	1882252	rs3758021	A	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=1.708;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	1882261	rs3758022	G	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=1.708;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	1900855	rs7832438	A	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	1900911	rs2272608	C	T	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,56:0.67:84
chr8	1901110	rs74808197	G	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	1901177	rs80299596	A	G	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	1905132	rs3735876	G	A	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.821;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:127,46:0.27:173
chr8	2000428	rs35022521	G	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr8	2000512	rs17757454	C	T	71.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.39;ReadPosRankSum=-0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	2005414	rs7833424	C	T	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	2005624	rs3765206	G	A	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	2005676	rs3765208	A	G	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	2007116	rs7461903	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	2007230	rs6558591	A	C	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	2017388	rs201919679	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr8	2017509	rs76840052	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr8	2020366	rs13251504	A	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.60;ReadPosRankSum=-0.309;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	2020377	rs150521018	G	GATGCTCTCTGCCCTTCGGCCATGAAAGCCTCCATCGTTTC,GATGCTCTCTGCCCTTCGGCCCTGAAAGCCTCCATCGTTTC	1220.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=101.73;SOR=2.670;set=HC	GT:AD:AF:DP	1/2:0,9,3:0.75,0.25:12
chr8	2021421	rs2272720	G	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:81,36:0.31:117
chr8	2024207	rs7822836	A	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	2024405	rs3817698	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr8	2024437	rs3817699	C	T	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.41;ReadPosRankSum=-0.427;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr8	2024446	rs3817700	CG	TA	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.890;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.68;ReadPosRankSum=-1.097;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr8	2027633	rs1440291	C	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr8	2033579	rs59220531	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr8	2033641	rs62478375	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr8	2033653	rs77385556	C	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr8	2040104	rs2235121	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr8	2040337	rs6420202	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	2040401	rs2235123	G	A	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	2040415	rs893877	G	A	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	2042070	rs7828132	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	2048811	rs4876227	A	C	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	2054012	rs12677887	C	T	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	2054171	rs3817705	C	T	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	2054195	rs3817706	C	G	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	2054476	rs33927116	GA	G	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	2063920	rs34379172	CAT	C	4136.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	2064121	rs12548396	C	T	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	2077072	rs2280902	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	2088896	rs3736659	G	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	2091184	rs2280904	T	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	2112080	rs33945248	G	GTT	863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.955;QD=12.52;ReadPosRankSum=1.622;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:29,40:0.58:69
chr8	2112130	rs1036689	G	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr8	2148368	.	G	GTC	87	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9999;HP=2;HapScore=4;MGOF=30;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=87;QD=54.0;SC=GTATAGTTGTGTGTGTGCATG;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=2;WE=2148378;WS=2148362;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr8	2148370	.	G	C	29	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9999;HP=2;HapScore=4;MGOF=30;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=29;QD=31.8856062736;SC=ATAGTTGTGTGTGTGCATGTG;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=2148378;WS=2148362;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	2148550	rs2618845	G	A	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	2148771	rs7008255	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	2796277	rs585000	C	T	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:45,77:0.63:122
chr8	2806920	rs5741961	G	GAAAGAAAAGA	890.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr8	2813083	rs4875856	G	C	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:63,104:0.62:167
chr8	2832139	rs667595	C	G	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=-0.258;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:37,53:0.59:90
chr8	2836102	rs615578	C	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr8	2909992	rs6558702	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr8	2910020	rs6558703	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	2910223	rs6420209	C	T	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	2954348	rs3112	C	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr8	2964003	rs10503192	T	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	2965122	rs113534820	C	CTGTTTT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	2965209	rs1531351	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;MQ=60.58;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	2965244	rs3824271	T	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	2966072	rs3802291	G	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	2966328	rs3802292	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.68;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	2967639	rs898512	G	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	3000240	rs61664876	G	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr8	3008905	rs62490187	A	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr8	3019592	rs11998250	A	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr8	3038763	rs11785446	G	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	3038838	rs11785463	G	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	3045230	rs17319192	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	3045610	rs35871841	G	GTA	117	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	3046635	rs898501	G	T	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	3059365	rs5888954	TA	T	391.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	3072322	rs17079629	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr8	3141555	rs10099968	A	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	3141586	rs4875508	T	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	3165814	rs1393843	A	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	3166082	rs6558762	A	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr8	3201012	rs156075	C	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	3201034	rs156076	G	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	3216945	rs10103950	T	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-1.829;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr8	3216948	rs34858861	TA	T	133.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=0.248;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr8	3224451	rs10092967	G	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr8	3224476	rs4875702	A	C	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.09;ReadPosRankSum=-0.316;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr8	3224561	rs4875703	T	C	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:24,78:0.76:102
chr8	3224788	rs150085581	GGA	G	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.997;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr8	3224818	rs10096251	G	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=1.974;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr8	3224878	rs10096279	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr8	3226696	rs7002678	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr8	3226741	rs6984292	A	T	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr8	3226899	rs6984477	A	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:23,66:0.74:89
chr8	3226919	rs270096	C	T	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	3226994	rs6984628	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr8	3263500	rs10097933	T	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr8	3263813	rs10110730	G	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.61;ReadPosRankSum=-0.611;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr8	3263821	rs10098063	A	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=-0.402;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr8	3265590	rs10088378	C	T	5612.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr8	3266863	rs76650298	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr8	3266876	rs56284885	T	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr8	3266909	rs10094820	G	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr8	3267161	rs3839873	A	AC	344.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr8	3326071	rs181016421	C	T	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr8	3351147	rs17066296	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-3.679;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:68,24:0.26:92
chr8	3351195	rs56109797	C	A	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.086;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:91,39:0.30:130
chr8	3351264	rs9314495	G	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	3351362	rs10503206	C	G	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr8	3432692	rs11136643	TA	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-0.472;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr8	3443799	rs370358989	G	GA	713.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.912;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.387;QD=19.29;ReadPosRankSum=-0.977;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr8	3443840	rs34200940	GA	G	177.52	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr8	3565900	rs12674750	C	T	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.179;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=12.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=1.368;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:22,61:0.73:83
chr8	3566106	rs10105577	T	C	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	3566161	rs10105599	T	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	3807319	rs2740867	C	G	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	3807667	rs2627515	C	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	3855302	rs1863475	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr8	3855369	rs11303985	GA	G	88.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr8	4494811	rs2617007	T	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	4495107	rs2617008	G	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr8	4851787	rs3860871	C	G	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr8	6264130	rs2305023	G	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	6264358	.	CCTCCCCCGCTGCCTGTCCCACCAAAACCCCCTGCTCCTGCTCT	C	486.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	6272185	rs2440437	G	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	6272399	rs2305022	G	T	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	6272477	rs2515415	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	6272481	rs2442545	C	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	6272532	rs2515417	T	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	6272540	rs3214738	TG	T	176.87	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	6272543	rs55687318	A	C	185.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	6288879	rs2251956	A	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6296550	rs2442513	G	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	6299532	rs2053618	A	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	6299559	rs140161935	C	A	2545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=-0.965;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:52,115:0.69:167
chr8	6302183	rs930557	G	C	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	6302418	rs2515569	A	G	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	6312880	rs2515575	C	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	6335072	rs41311412	T	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=2.820;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr8	6357307	rs2916715	T	C	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6371114	rs13278243	A	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	6371129	rs13277236	C	T	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=44.53;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	6371133	rs35473795	C	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=43.89;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	6372033	rs2916736	T	G	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	6372112	rs2916735	G	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	6372172	rs2979671	T	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	6377433	rs1961222	C	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	6378763	rs3020221	C	T	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	6389889	rs6559167	C	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	6390079	rs2515482	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	6420534	rs3739391	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr8	6478956	rs2936531	A	G	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.51;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	6478956	.	ATCTC	GTCTC,GTCTG	883	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=24;MQ=60.0;NF=58,39;NR=24,17;PP=378,883;QD=5.03379527497;SC=CTGTAATTCTATCTCTGTCTG;SbPval=0.67;Source=Platypus;TC=85;TCF=58;TCR=27;TR=82,56;WE=6478968;WS=6478946;set=Platypus	GT:AF:DP	0/1:0.96:85
chr8	6478960	rs11137040	C	G	1691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-2.138;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:30,72:0.71:102
chr8	6478986	rs2912010	C	T	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	6479042	rs1057090	C	T	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	6479178	rs2912016	C	A	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:54,103:0.66:157
chr8	6479282	rs11137041	G	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr8	6500544	rs1057091	C	T	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:68,108:0.61:176
chr8	6500751	rs2433149	C	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	6582485	rs2980686	A	C	834.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.070;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.144;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=-0.536;SOR=0.416;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr8	6588392	rs59149072	A	AT,ATT	791.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.85;ReadPosRankSum=0.264;SOR=0.502;set=HC	GT:AD:AF:DP	1/2:3,12,27:0.29,0.64:42
chr8	6614606	rs10102758	A	G	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6669210	rs148339184	C	T	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:273,124:0.31:397
chr8	6673269	.	TA	T	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.882;QD=5.90;ReadPosRankSum=0.502;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:57,46:0.45:103
chr8	6673377	rs11338621	CA	C	7767.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	6681256	rs9772979	A	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	6686791	rs2741087	C	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.320;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr8	6690173	rs2978902	G	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.244;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr8	6690215	rs2978901	G	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.165;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr8	6690276	rs2741098	T	C	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-3.046;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:53,22:0.29:75
chr8	6692909	rs2978895	G	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.67;ReadPosRankSum=-0.917;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	6692968	rs2977806	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr8	6728198	rs1047031	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:49,88:0.64:137
chr8	6735300	rs2293958	T	A	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	6735399	rs11362	C	T	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=0.866;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:15,46:0.75:61
chr8	6735423	rs1800972	C	G	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.78;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	6735423	.	CGCTGGCTC	GGCTGGCTC,GGCTGGCTT	524	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.07;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=25;MQ=60.0;NF=25,4;NR=28,8;PP=524,55;QD=10.5428530669;SC=ACTGGGGAGACGCTGGCTCCT;SbPval=0.55;Source=Platypus;TC=53;TCF=25;TCR=28;TR=53,12;WE=6735439;WS=6735413;set=Platypus	GT:AF:DP	0/1:1.00:53
chr8	6735431	rs1799946	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.219;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr8	6782271	rs712276	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.023;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr8	6793414	.	C	A	865.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr8	6793540	rs736227	C	T	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:79,72:0.48:151
chr8	6793581	rs2738100	A	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,70:0.51:136
chr8	6913031	rs2272719	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:71,33:0.32:104
chr8	7272379	rs140131735	G	C	87.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.00;MQRankSum=-0.000;QD=14.64;ReadPosRankSum=-0.210;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	7272439	rs200803965	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	7274308	rs202022216	A	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	7308386	rs1042797	T	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-12.038;QD=0.88;ReadPosRankSum=1.151;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:232,40:0.15:272
chr8	7308798	rs4840280	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	7340323	rs78817522	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.50;QD=27.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	7343806	rs148956195	C	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.33;MQRankSum=-2.639;QD=4.15;ReadPosRankSum=0.793;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	7673308	rs78936136	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.79;MQRankSum=-1.803;QD=5.85;ReadPosRankSum=-0.272;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	7686323	rs201085281	G	A	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.32;MQRankSum=-1.362;QD=7.67;ReadPosRankSum=0.000;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr8	7694034	rs202183310	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=14.48;ReadPosRankSum=0.599;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr8	7718266	rs3860876	A	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.07;QD=28.32;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	7720995	rs199909847	T	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.522;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=14.034;MLEAC=1;MLEAF=0.500;MQ=45.95;MQRankSum=-3.660;QD=13.37;ReadPosRankSum=0.504;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr8	7721184	rs147263056	C	G	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr8	8176221	rs13269488	C	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	8176387	rs143409664	C	CGGGGCG	1088.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	8176554	rs12549973	C	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.432;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:112,37:0.25:149
chr8	8176825	rs6601691	A	G	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	8185859	.	A	T	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=2.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=1.408;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:20,34:0.63:54
chr8	8559898	rs11995449	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.16;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	8560536	rs12548737	G	A	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.224;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:176,64:0.27:240
chr8	8560602	rs2280560	C	T	9771.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr8	8560909	rs12153	G	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	8643582	rs2271340	C	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.532;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:123,37:0.23:160
chr8	8643725	rs2271341	T	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr8	8655023	rs3748144	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr8	8747537	rs399123	T	C	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-1.202;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:67,45:0.40:112
chr8	8747894	rs429433	A	G	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	8749729	rs3748141	G	C	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr8	8750467	rs1062988	A	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr8	8860620	rs2288672	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr8	8866661	rs9329175	G	A	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:34,76:0.69:110
chr8	8869199	rs9650616	T	G	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=1.781;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr8	8869277	rs28665409	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	8873646	rs3895823	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr8	8875764	rs7822129	G	T	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-0.584;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:41,71:0.63:112
chr8	8887542	rs140242735	TAAC	T	2109.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:82,57:0.41:139
chr8	8887566	rs34111588	A	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr8	8905786	rs11433078	G	GT	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr8	8905926	rs2921379	A	G	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	8999187	rs330924	G	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr8	9537635	rs12114182	G	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	9563797	rs11343041	CT	C	381.84	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr8	9564437	rs7006985	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr8	9564600	rs12542457	T	C	141.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr8	9577794	rs72301704	A	AT	167.25	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr8	9577804	rs5025210	C	A	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	9577940	rs6601360	T	C	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	9593081	rs4841208	A	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	9610285	rs187184248	C	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr8	9620691	rs141570530	T	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.588;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:73,33:0.31:106
chr8	10102863	rs4841293	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	10210990	rs111889058	ACCGGAGGC	A	615.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr8	10285825	rs10903326	T	G	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	10383138	rs35102108	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,32:0.32:100
chr8	10383226	rs4521726	C	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr8	10411438	rs35201635	AT	A	957.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr8	10411743	rs78791583	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	10464307	rs12542104	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr8	10464616	rs147334256	G	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:124,64:0.34:188
chr8	10464755	rs55642448	C	T	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:75,49:0.40:124
chr8	10464885	rs56382513	T	C	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=1.173;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:124,55:0.31:179
chr8	10465097	rs4354268	C	T	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;MQ=59.91;set=Intersection	GT:AD:AF:DP	0/1:98,245:0.71:343
chr8	10465748	rs11783478	T	C	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:287,150:0.34:437
chr8	10465771	rs11785822	G	T	15075.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr8	10465942	rs28446662	T	A	2339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-0.690;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:234,131:0.36:365
chr8	10466482	rs13267180	G	A	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:69,142:0.67:211
chr8	10467124	rs4841399	G	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.783;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr8	10467207	rs4840498	C	A	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	10467576	rs4840499	T	C	12704.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.458;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;MQRankSum=4.543;QD=22.57;ReadPosRankSum=7.985;SOR=0.636;set=HC	GT:AD:AF:DP	1/1:19,544:0.97:563
chr8	10467647	.	G	C	2512	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=1;MGOF=38;MMLQ=23;MQ=56.79;NF=133;NR=117;PP=2512;QD=20;SC=TCCTCTAACTGCACCGCCTCT;SbPval=0.31;Source=Platypus;TC=811;TCF=393;TCR=418;TR=250;WE=10467660;WS=10467614;set=Platypus	GT:AD:AF:DP	1/0:561,250:0.31:811
chr8	10467652	rs4840501	G	C	13196.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:197,672:0.77:869
chr8	10468172	rs4840502	G	A	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:154,66:0.30:220
chr8	10469233	rs35602868	A	G	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:36,69:0.66:105
chr8	10469817	rs6996950	G	A	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	10470068	rs74990397	C	T	2134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=1.757;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:101,107:0.51:208
chr8	10470915	rs11773913	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	10470941	rs4840503	C	T	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	10530037	rs11250057	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	10530218	rs11250058	C	T	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	10532355	rs4841419	T	C	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	10532401	rs4840505	A	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	10583203	rs10110624	A	G	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	10583506	rs4841432	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr8	10584212	rs10100209	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr8	10584288	rs10100333	C	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr8	10683127	rs7840785	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr8	10683623	rs2271357	G	A	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr8	10683776	rs2271356	T	A	577.31	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr8	10689050	rs6991526	T	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr8	10782442	rs4841459	A	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	10892530	rs2898254	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr8	10920326	rs6601555	C	T	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:27,79:0.75:106
chr8	11105077	rs2572431	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr8	11105304	rs2572430	T	G	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:45,72:0.62:117
chr8	11142389	rs3021505	C	CG	2836.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	11142625	rs2272594	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	11152957	rs2245937	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	11155613	rs2409754	A	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	11157371	rs2736387	A	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	11157460	rs3808513	T	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-1.943;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:51,25:0.33:76
chr8	11162496	rs2164272	A	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.413;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.279;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:81,23:0.22:104
chr8	11162602	rs2256016	C	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	11162609	rs2060465	T	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.356;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.503;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr8	11164012	rs17797443	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr8	11174484	rs11784572	G	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr8	11177410	rs2293855	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr8	11177447	rs2293856	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr8	11204165	rs2572387	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-1.654;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr8	11204184	rs11784458	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-2.046;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:60,21:0.26:81
chr8	11204755	rs11777746	T	C	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.902;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:203,78:0.28:281
chr8	11292542	rs2280803	C	T	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.245;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:88,39:0.31:127
chr8	11295511	rs2001463	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.092;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr8	11296091	rs1057750	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr8	11301753	rs3021513	A	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	11400628	rs12386974	C	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.999;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr8	11400680	rs2245250	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr8	11400944	rs2245232	G	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,55:0.65:84
chr8	11403769	rs2244931	C	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr8	11405437	rs6994605	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	11406593	rs3816668	T	C	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:41,89:0.68:130
chr8	11411005	rs11250146	G	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr8	11414237	rs2306234	T	C	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	11415572	rs4841557	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr8	11415597	rs4841558	C	T	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr8	11416122	rs2467518	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	11416171	rs7011778	T	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr8	11416428	rs6988443	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr8	11416635	rs11785333	G	A	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.37;ReadPosRankSum=-1.241;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:27,35:0.56:62
chr8	11416643	rs11785335	G	A	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.88;ReadPosRankSum=0.195;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:26,32:0.55:58
chr8	11417257	rs11783065	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr8	11417493	rs10098664	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr8	11418385	rs2898289	G	A	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.976;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:156,63:0.29:219
chr8	11418773	rs4841561	C	T	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:93,71:0.43:164
chr8	11421358	rs10097005	C	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr8	11421384	rs10097015	C	T	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chr8	11421793	rs1042689	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr8	11422045	rs1042701	G	A	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:82,182:0.69:264
chr8	11422130	rs7843987	T	C	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:70,160:0.70:230
chr8	11422170	rs7840433	A	G	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:42,109:0.72:151
chr8	11606312	rs3735819	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	11612698	rs804280	C	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.859;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr8	11614305	rs13250578	A	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.26;ReadPosRankSum=-0.444;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr8	11614313	rs3729852	A	G	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.72;ReadPosRankSum=0.088;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr8	11614316	rs3729853	T	C	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.852;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.82;ReadPosRankSum=-0.161;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr8	11618998	rs804285	G	C	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	11619261	rs2740431	T	A	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr8	11619334	rs811966	C	T	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:80,136:0.63:216
chr8	11619397	rs36018280	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:147,75:0.34:222
chr8	11619635	rs2645455	T	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr8	11629119	rs804269	T	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,35:0.44:80
chr8	11629241	rs804267	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.024;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr8	11640611	rs8191639	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr8	11660051	rs2645429	A	G	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.597;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:55,39:0.41:94
chr8	11660916	rs2252567	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr8	11665959	rs1032577	C	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr8	11666218	rs71711801	GTCCCAC	G	22885.73	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr8	11666451	rs1616534	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr8	11683653	rs904011	T	C	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	11687938	rs1293313	G	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	11689228	rs2409836	T	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	11695872	rs10903343	T	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	11702542	rs8898	T	C	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	11831661	rs35283519	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr8	11831948	rs7461062	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr8	11832079	rs10108075	A	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:78,39:0.33:117
chr8	11853596	rs11250186	A	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:70,34:0.33:104
chr8	11872844	rs56408045	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.96;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr8	12516857	rs1808161	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr8	12584659	rs10095845	C	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	12589179	rs3802269	C	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr8	12592956	rs13251315	C	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	12593045	rs13272425	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	12598608	rs4831354	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	12600622	rs7837242	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	12809667	rs2272624	A	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-0.469;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:68,50:0.42:118
chr8	12809700	rs2272623	G	A	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=-1.103;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:74,59:0.44:133
chr8	12863700	rs35757493	G	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr8	12870139	rs12156247	G	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-2.194;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:20,36:0.64:56
chr8	12870186	rs12156420	C	G	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=0.230;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:42,66:0.61:108
chr8	12878637	rs528255	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	12878677	rs622106	T	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-1.510;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:82,35:0.30:117
chr8	12878807	rs3739310	T	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:72,29:0.29:101
chr8	12878830	rs3739309	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:67,27:0.29:94
chr8	12879062	rs503550	T	C	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.495;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:140,51:0.27:191
chr8	12879099	rs502882	G	A	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=7.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-1.128;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:137,62:0.31:199
chr8	12879334	rs608909	T	C	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.811;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:143,65:0.31:208
chr8	12879539	rs608052	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:60,26:0.30:86
chr8	12879600	rs498852	C	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	12888743	rs13281744	A	G	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:48,114:0.70:162
chr8	12888908	rs7826836	T	G	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	12888997	rs573652	T	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	12943691	rs621554	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	12948951	rs609020	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	12950110	rs7829535	G	A	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	12952174	rs5889417	CA	C	308.94	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr8	12952230	rs658948	C	T	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	12957475	rs532841	C	T	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	12960281	rs2280335	T	C	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	12972946	rs35858677	C	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	12972972	rs145012061	A	AT	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	12972981	rs56332333	A	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	12973078	rs34462909	T	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	13072177	rs3739300	C	T	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	13251235	rs17805176	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	13258936	rs289583	T	A	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	13356424	rs3736135	G	T	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	13356802	rs3816747	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	13356818	rs11203494	TT	CG	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	13357587	rs1383942	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	13424583	rs13273355	C	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	13425353	rs11203497	T	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	13965581	rs11336839	AT	A	412.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	14094993	rs35279380	A	AAAC	1915.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.76;ReadPosRankSum=-0.332;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr8	14095199	rs13269000	T	C	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	14095250	rs35876033	A	AT	1175.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	15095224	rs151292167	C	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	15508200	rs1035972	T	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	15606182	rs7820648	G	A	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	15615179	rs3834708	CCT	C	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	15978063	rs4338104	C	T	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	16007649	.	G	GTATA	43.73	.	AC=1;AF=0.500;AN=2;DP=3;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr8	16850498	rs1721100	C	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	16859398	rs10448135	C	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	16884721	.	A	ACC	146	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=11;HapScore=2;MGOF=91;MMLQ=24;MQ=60.0;NF=1;NR=3;PP=146;QD=38.75;SC=GATTTCGGCGACCCCCCCCCC;SbPval=0.58;Source=Platypus;TC=5;TCF=1;TCR=4;TR=4;WE=16884729;WS=16884711;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr8	17042129	rs75130109	C	CCT	780.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	17042416	rs2517086	G	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	17063335	rs2904674	A	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17068013	rs1548350	T	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	17092164	rs2959606	G	T	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr8	17100357	rs2904701	C	T	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17100456	rs150002154	G	GA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=2.559;QD=2.69;ReadPosRankSum=-0.119;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr8	17137687	rs3213601	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	17157259	rs6992513	G	A	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	17159812	rs6587028	G	A	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	17166765	rs1548353	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	17166866	rs62498845	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	17170645	rs4921749	T	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	17230644	rs7388581	G	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	17270763	rs2073694	G	C	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	17270787	rs67972978	A	G	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	17270837	rs72607374	G	C	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	17406367	rs148664959	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.076;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr8	17419689	.	ATTTTTTTTTTTTTTTTTT	A	1231.73	.	AC=2;AF=1.00;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	17421279	rs2588173	T	C	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	17486282	rs2229084	T	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	17500223	rs4705	T	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	17503431	rs1043883	G	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17532573	rs2269698	T	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	17532619	rs2269699	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	17533568	rs2301541	A	T	166.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	17533633	rs2301542	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	17541999	rs2979792	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	17579135	rs6982255	C	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	17611886	rs2979788	G	A	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	17612456	rs11203910	C	T	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	17612875	rs3739407	A	G	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	17726019	rs10112643	A	G	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr8	17732084	rs2517294	GC	CA	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	17739538	rs3739406	T	C	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	17742929	rs2073562	A	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	17743020	rs484373	G	A	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	17743256	rs369898	G	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	17753657	rs500282	G	A	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	17753873	rs3896063	C	T	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	17796382	rs412750	AC	GT	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	17797409	rs2285303	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	17804665	rs28655174	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	17814680	rs11777618	G	C	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	17814915	rs208753	A	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	17818042	.	C	CTTTTTTTTTTT	365.74	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	17819572	rs3780103	C	T	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	17819761	rs208060	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	17827260	rs3214087	A	AC	1249.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	17829756	rs34990698	C	CAA	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	17851248	rs429633	C	A	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	17868029	rs2467556	C	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	17868245	rs2467555	C	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	17871598	rs13266287	T	A	297.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17871619	rs28551649	A	C	238.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	17885091	rs3213605	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	17891178	rs6586680	C	T	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	17916224	rs420610	A	C	189.94	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr8	17916553	rs7465164	C	T	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	17916598	rs33985304	CT	C	685.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	17918934	rs10103355	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	17920807	rs7824644	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	17920820	rs7824650	A	T	813.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	17921921	rs2073574	T	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	17924609	.	T	TGCACCTGTGCTGTATATCTAAGACATACA	543.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=67.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17928711	rs11785746	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	17928753	rs113896339	G	GAAATA	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=43.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	18074536	rs7387461	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	18077007	rs10106882	G	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	18258316	rs1208	G	A	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	18413875	rs2260920	A	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	18415081	rs2634454	G	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	18430201	rs2277137	T	A	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	18430219	rs74625154	C	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	18432578	rs2248559	C	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	18432924	rs1546002	C	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	18457957	rs2932001	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	18632327	rs7822288	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.18;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	18632333	rs7841096	A	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	18656601	rs2248631	G	A	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	18658929	rs1386691	C	A	280.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	18658950	rs11774165	T	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	18659765	rs2638646	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	18659928	rs2632847	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	18660007	rs2638647	A	G	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	18661932	rs60951997	TAA	T	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	18666210	rs2638653	G	A	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	18725072	rs1009482	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	18729817	rs7016219	GT	AG	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	18793697	rs10092681	T	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	18941583	rs59435769	G	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	19171172	rs140422419	G	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	19190491	rs1574288	A	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	19190692	rs1574287	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	19190705	rs75744336	A	G	321.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	19192192	rs17128221	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	19192332	rs56005620	G	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	19218666	rs140756695	T	TTTTTG	119	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	19218745	rs35647122	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	19218766	rs4921637	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.93;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	19221700	rs34608771	G	A	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	19230955	.	G	GTA	133	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=20;MQ=60.0;NF=3;NR=0;PP=133;QD=46.3333333333;SC=ATGTGTGTGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=6;TCF=5;TCR=1;TR=3;WE=19230963;WS=19230945;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr8	19362768	rs7017776	C	T	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	19363425	rs6984644	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	19456473	rs4244454	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	19680736	rs12547934	T	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	19680979	rs4464983	C	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	19681647	rs2410612	G	A	282.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	19682545	rs3816246	A	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	19682592	rs7018076	A	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	19689633	rs4434638	T	C	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	19689821	rs4615593	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	19699191	rs34564004	G	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	19699236	rs35843228	T	A	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	19813676	rs270	C	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	20003431	rs35711001	AT	A	151.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	20005439	rs10102779	T	G	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	20005716	rs903997	G	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	20007100	rs60330468	CCT	C	535.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;QD=35.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	20007125	rs10216526	C	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	20028474	rs7841346	C	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	20028553	rs7828538	T	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	20035809	rs1532446	G	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	20036043	rs1908809	C	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	20036095	rs2279708	G	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	20036521	rs1390937	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	20036713	rs1390938	A	G	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	20036827	rs2270637	C	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	20068163	rs7460146	T	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	20073811	rs201704225	A	ATGT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	20107143	rs904003	A	G	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	20110710	rs372820162	C	T	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	21550768	rs15881	A	C	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	21550800	rs1128397	A	T	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	21771309	rs35282792	CT	C	129.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-1.191;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr8	21827880	.	A	AAC	304.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr8	21842023	rs1872220	TT	GA	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	21890581	rs1947985	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	21890589	rs1947986	G	A	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.97;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	21891968	rs4871915	C	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	21904212	rs1078363	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	21924297	rs9657287	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	21924743	rs11135821	G	A	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	21924778	rs11135822	T	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	21924944	rs11135823	A	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	21925214	rs6997244	C	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	21927137	rs12680100	G	A	6731.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr8	21927211	rs12681799	C	G	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	21927460	rs7386762	C	G	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	21930007	rs3824334	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.66;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	21930068	rs3824336	A	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	21931141	rs143269534	CAAAAA	C	970.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.95;ReadPosRankSum=0.457;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr8	21931170	rs199820139	AAAAAAAAAAGAG	A	2197.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.26;QD=41.47;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	21937667	rs6557781	T	C	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	21937870	rs7835670	G	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	21939435	rs6557782	C	T	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	21952226	rs1456	T	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	21955116	rs11352	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	21956108	rs35497596	A	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	21958333	rs1552283	T	C	8861.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr8	21958831	rs1968870	C	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	21958843	rs71544853	C	CTCTT	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	21959191	rs6557810	A	G	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	21959877	rs7812435	T	G	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	21964802	rs1552286	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	21966700	rs57316099	GC	G	887.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	21966707	rs58343576	CG	C	887.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	21966891	rs149177341	C	CCCGCTCCCAGTCCCTGCGGAGA	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	21967075	rs7830885	G	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	21967304	rs7844781	C	T	7348.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	21967309	rs7817171	A	C	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr8	21973970	rs6557829	C	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	21974032	rs6557830	A	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	21976872	rs12677278	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	21978072	rs11135859	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	21978088	rs11779694	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	21984488	rs12681529	G	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	21984650	rs12675745	A	G	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	21984945	rs12675375	C	T	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	22020294	rs2070684	C	A	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	22034397	rs143265093	G	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	22035248	rs377158841	A	AG	5431.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	22053163	.	A	AT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.687;QD=1.51;ReadPosRankSum=-0.546;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr8	22054197	rs2229777	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=2.129;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	22054512	rs12674752	C	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	22059606	rs13257482	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	22066855	rs4463424	C	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	22067022	rs77242743	C	A	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	22079355	rs4872422	A	G	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	22085260	rs10100426	T	C	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	22262139	rs7012503	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	22385061	rs17733133	T	C	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	22419191	rs2469764	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	22421355	rs2449336	A	G	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	22421395	rs2469762	G	A	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	22422923	rs960509	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	22424244	rs2272716	T	C	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	22424489	rs11779261	A	G	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	22426859	rs13258049	G	C	131.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.95;ReadPosRankSum=-0.748;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr8	22428658	rs2449331	T	C	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr8	22428708	rs1047030	A	G	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	22428751	rs55893847	C	G	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	22430766	rs10088686	C	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	22432377	rs710098	C	A	5257.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.163;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=18.546;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.79;ReadPosRankSum=1.696;SOR=2.351;set=HC	GT:AD:AF:DP	1/1:3,218:0.99:221
chr8	22442287	rs4872003	A	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	22442661	rs2294047	A	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	22447426	rs3830696	CGGTCCGGGAG	C	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	22457077	rs71502592	C	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	22457205	.	TT	GC	116	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=1;HapScore=2;MGOF=28;MMLQ=24;MQ=60.0;NF=2;NR=2;PP=116;QD=42.3669687156;SC=GGCGGCTGCATTGGCCGGGGC;SbPval=0.68;Source=Platypus;TC=4;TCF=2;TCR=2;TR=4;WE=22457214;WS=22457195;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	22457388	rs2272718	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	22460204	rs34268501	A	G	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	22462374	rs3735901	T	C	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	22463623	rs7843828	C	T	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	22463697	rs2291230	C	G	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	22464064	rs2291232	T	C	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	22464390	rs2291234	T	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	22465385	rs34027561	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	22465427	rs6999893	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	22470710	rs1871902	G	A	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	22471824	rs3736147	G	A	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	22472255	rs71299322	C	CTGCTGCCTTCATCCTGATGGGT	3531.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	22473158	rs11781149	C	T	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	22473465	rs7843128	T	C	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	22477131	rs10551411	ACAT	A	2213.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	22481449	rs1871900	A	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	22482799	rs876714	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	22482851	rs900268	A	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	22487388	rs6558170	C	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	22487422	rs6558171	T	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	22491980	rs17746902	G	T	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	22492052	rs6558172	G	A	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	22492103	rs6558173	G	T	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	22492129	rs6558174	A	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	22502207	rs34656094	CT	C	3691.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	22549048	.	G	A	601.77	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	22549137	rs35371013	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	22549697	rs35201266	C	T	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	22570844	rs3853	G	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	22570907	rs35121552	GT	G	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	22570935	rs1047406	T	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	22571018	rs1047398	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	22571113	rs2280106	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	22584718	rs1129474	T	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	22785013	rs1553778	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	22863004	rs2430811	A	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	22863017	rs2466179	G	T	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	22863191	rs2430812	C	T	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	22864622	rs2466178	T	C	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr8	22865320	rs2430815	T	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	22881852	rs6557609	T	C	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	22885109	rs1105944	A	G	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	22886020	rs13265018	A	G	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	22886130	rs2293399	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	22887013	rs6420148	C	G	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	22888407	rs10866818	G	A	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	22926313	rs1129424	G	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	22989735	rs5890091	C	CAAA	135.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.64;ReadPosRankSum=1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	22990193	rs56285426	TTG	T	189.75	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	22995324	rs78341389	C	T	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	23001988	rs1133782	A	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	23002444	rs75163938	C	T	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	23004629	rs3924519	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	23021346	rs11135703	G	A	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	23054779	rs3824218	T	C	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	23059265	rs11294851	TC	T	2017.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	23059280	rs4872078	G	T	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	23059324	rs20575	C	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	23060256	rs17620	T	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	23114203	.	G	GTT	237.74	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	23116103	rs56160478	G	A	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	23116431	rs4872098	C	T	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	23145320	rs11777755	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	23146095	rs11546682	A	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	23147564	rs3808536	G	A	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	23148003	rs4469460	G	A	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	23148930	rs2272762	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	23148940	rs2272761	G	A	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	23148978	rs2272760	G	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	23149089	rs2272759	A	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	23150671	rs11135720	A	G	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	23150772	rs72237352	CTGCT	C	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	23150878	rs13530	T	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	23151000	rs3860836	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	23152334	rs15946	A	G	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	23152756	rs11783381	G	A	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	23153022	rs1002792	T	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	23156281	rs62503960	C	T	180.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	23160778	rs3765215	C	G	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	23167353	rs1063582	T	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	23167560	rs12548642	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	23174425	rs3824213	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	23174748	rs13250587	A	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	23177446	.	C	T	3367.77	.	AC=1;AF=0.500;AN=2;DP=294;set=Intersection	GT:AD:AF:DP	0/1:134,158:0.54:292
chr8	23177619	rs13254579	C	A	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr8	23186007	rs1051146	T	C	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	23226014	rs6999447	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	23282441	rs11276760	GCATTATACAA	G	3518.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	23292044	rs139348326	GCA	G	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr8	23301340	rs11787224	A	C	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	23302164	rs2272640	A	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	23307580	rs11777391	G	T	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	23423758	rs10992	G	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	23429448	rs59804560	A	AT	171	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr8	23431045	rs1810193	T	C	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	23431407	rs3174040	A	G	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	23432314	rs1801451	T	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	23432326	rs1398232	T	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	23540417	rs11781886	C	T	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	23560648	rs35373423	G	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	24187382	.	TTG	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.64;ReadPosRankSum=0.480;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	24187399	rs11994377	T	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=-0.000;QD=7.14;ReadPosRankSum=-0.464;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	24193264	rs4872222	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	24208649	rs10092862	C	T	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	24208934	rs5012230	C	A	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	24211278	rs7815643	C	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	24211331	rs7814768	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	24211884	rs10694022	A	ATGTC	1255.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	24211993	rs10610134	ACTAT	A	1541.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	24247556	rs4872231	A	G	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	24256470	rs2291577	C	T	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	24257137	rs17799264	T	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	24261526	rs3765124	A	G	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	24333571	rs368088656	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	24333601	rs10100176	G	A	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	24339896	rs11348969	GA	G	179.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	24348221	rs1492401	T	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	24350188	rs1352952	C	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	24363792	rs6982442	G	A	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	24365157	rs34338646	TCA	T	532.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	24365181	rs11307556	AT	A	31	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=7.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	24774683	rs196864	C	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	24811064	rs11300136	AG	A	614.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	25132735	rs4478580	T	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	25149501	rs78044122	T	G	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	25156296	rs2956656	T	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	25158072	rs5890219	AT	A	2698.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	25159665	rs868335	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	25174710	rs2709627	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	25181356	rs2666174	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	25189963	rs17053410	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	25200148	rs10110351	A	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	25202915	rs2468901	A	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	25203022	rs2468902	A	G	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	25209144	rs7012335	A	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	25226261	rs17198394	G	A	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	25227229	rs2048083	T	G	320.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	25227234	rs2048082	A	G	320.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	25227255	rs2659578	C	T	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	25230168	rs2271108	C	T	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	25230267	rs2271106	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	25231044	rs12676152	T	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	25231117	rs3215159	C	CT	1374.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	25231385	rs2271105	T	C	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	25234858	rs2659585	A	G	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	25235055	rs34962551	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	25237801	rs11989035	T	C	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	25237963	rs17053525	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	25240100	rs7837477	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	25246481	rs2709602	G	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	25247821	rs113940021	TA	T	649.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:3,39:0.93:42
chr8	25249545	rs6991928	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	25250423	rs6557840	A	G	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	25258442	rs3750194	C	T	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	25261281	rs17053612	C	T	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	25268511	rs3030791	G	A	111.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	25280666	rs2709608	A	C	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	25293858	rs2012592	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	25296930	rs2271112	C	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	25301759	.	C	CTTT	242.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;QD=30.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	25317614	rs11786622	T	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	25317691	rs6987936	A	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	25317824	rs1506863	A	T	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	25323682	rs58747959	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	25323777	rs10108752	T	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	25325730	rs11996213	T	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.48;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	25340833	rs66537174	G	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	25744257	rs6557865	G	A	3229.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=-0.669;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:2,124:0.98:126
chr8	25766097	rs34200265	A	AT	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	25890478	rs1872497	G	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	25899596	rs117195303	G	T	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	26240637	rs1055476	C	G	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=1.749;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	26240646	rs1055479	A	G	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.62;SOR=1.377;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	26248986	rs62490973	G	A	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	26249018	rs2304300	G	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	26365716	rs2233701	C	T	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	26434795	rs431246	C	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	26441275	rs415524	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	26441562	rs408753	A	G	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	26481771	rs327222	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	26483998	rs58931747	AACACAC	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	26484064	rs4872457	T	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	26510792	rs708621	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	26716472	rs536401	A	G	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	26943929	rs1814489	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	26944600	rs2028908	A	G	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.79;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	27094548	rs10217008	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	27096634	rs1542185	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	27099879	rs3739212	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	27101204	rs4733040	T	A	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	27101204	.	TTA	ATC	1814	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=4;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=33;NR=20;PP=1814;QD=35.2352429219;SC=CCTACGCCCCTTAACACATGG;SbPval=0.53;Source=Platypus;TC=53;TCF=33;TCR=20;TR=53;WE=27101214;WS=27101194;set=Platypus	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	27101206	rs7830662	A	C	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	27147716	rs12386801	A	C	221.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	27155952	rs77389621	C	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	27204663	rs2874826	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	27204857	rs4629818	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	27205046	rs57735330	AG	A	1595.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	27277537	rs1030526	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	27279705	rs2241652	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.61;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	27288033	rs7827965	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	27289612	rs11988406	C	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	27289935	rs2303881	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	27289963	rs2303882	T	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	27291557	rs919493	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	27291749	rs12056620	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	27292287	rs1896959	A	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	27292292	rs1896960	A	G	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	27293865	rs7005936	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	27293989	rs2241654	G	A	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	27294532	rs2163176	C	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	27294606	rs7005954	G	C	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	27294823	rs6996922	T	C	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	27295109	rs2288617	A	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	27297696	rs2241657	T	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	27303126	rs4733064	A	G	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	27308538	rs751018	G	A	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	27310546	rs3735758	A	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	27311703	rs1879184	T	C	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	27312040	rs10093964	C	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	27312135	rs7007145	G	A	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	27315726	rs1879183	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	27315876	rs1879182	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	27315900	rs1879181	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	27319292	rs735421	A	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	27321597	rs3735757	G	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	27324822	rs891398	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	27326838	rs139680977	AGG	A	5183.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	27328354	rs2472554	G	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	27436236	.	G	GTTTGTTTTGT	979.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=42.60;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	27456253	rs2279590	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	27462008	rs28541694	C	G	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	27462481	rs7982	A	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	27467821	rs2070926	C	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	27559214	rs66683138	G	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	27630117	rs17057820	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	27630131	rs17478478	C	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	27630152	rs7842666	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	27634064	rs4732748	C	T	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	27641609	rs1824449	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	27645704	rs6558014	C	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	27650428	rs4732754	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	27661030	rs139887923	T	TAATA	1251.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	27661066	.	T	TACAC	309.75	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	27661085	rs62498042	G	A	319.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	27665848	rs10101429	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	27667719	rs1052874	C	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	27667969	rs2294092	C	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	27679981	rs3779620	T	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	27680576	rs727813	G	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	27680809	rs3779619	T	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	27685521	rs78755489	AC	A	37.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	27690557	rs10113621	A	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	27690780	.	GGGTGGATCACCTGAGGTC	G	209	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=0.9990;HP=2;HapScore=2;MGOF=4;MMLQ=23;MQ=50.47;NF=0;NR=1;PP=209;QD=237.0;SC=AGGCTGAGGTGGGTGGATCAC;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=1;WE=27690805;WS=27690770;set=Platypus	GT:AD:AF:DP	1/1:1,1:0.50:2
chr8	27729532	rs61737291	G	A	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	27737198	rs4732610	A	G	7372.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr8	27743535	rs2685381	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	27762537	rs939706	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	27779296	rs61737296	G	A	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	27898452	rs12675621	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	27903069	rs13279787	C	T	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	27915830	rs4336563	T	C	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	27918057	rs7817227	T	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	27924924	rs17408912	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	27925204	rs4732620	T	C	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	27927849	rs6998705	C	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	27931751	rs17058573	C	T	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	27931875	rs17058575	A	G	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	27932034	rs13255712	C	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	28210613	rs6558057	G	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	28341058	rs7843764	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	28362792	rs7833751	T	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr8	28384712	rs2241802	A	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	28568130	rs11446791	C	CT	57.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.42;ReadPosRankSum=0.210;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	28574803	rs240951	G	A	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	28600572	rs2048369	G	C	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	28633124	rs7462400	T	C	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	28638577	rs75609888	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	28651296	rs10694791	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.637;QD=1.59;ReadPosRankSum=0.785;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr8	28707622	.	GA	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.599;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr8	28876221	rs7837237	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	28900087	rs1948132	T	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	28966870	rs2291450	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	28979949	rs4732905	C	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	28981063	rs3750263	T	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	28984572	rs3763566	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	28989789	rs9644054	T	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	28997850	rs2279444	A	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	28998179	rs2246691	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	29005093	rs6986672	A	G	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	29005143	rs6986829	A	G	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	29006063	rs34477845	T	C	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	29023421	.	T	TTCGATTGTAGATCGAAGTACC	498.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	29033422	rs6558098	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	29053761	.	TAA	T,TA	758.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;MQRankSum=0.869;QD=11.86;ReadPosRankSum=0.766;SOR=0.704;set=HC	GT:AD:AF:DP	1/2:12,20,32:0.31,0.50:64
chr8	29107388	rs2954794	G	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	29203137	rs3215218	CT	C	293.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	29207845	rs3182143	C	T	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	29207872	rs2637819	G	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	29886613	rs10098255	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	29923732	rs2271367	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	29927300	rs6468093	C	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	29927321	rs6468094	A	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	29931375	rs986636	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	29935696	rs71204259	GA	G	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=0.895;QD=11.03;ReadPosRankSum=-0.510;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr8	29940271	rs13279112	A	G	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	29953256	rs56969689	C	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	29989564	rs7844812	A	G	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	29996158	rs4733141	A	G	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	29996256	rs7813902	T	C	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	30001915	rs12546113	T	G	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	30013759	rs7012749	A	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	30021437	rs13249436	C	T	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	30021461	rs71521373	C	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	30210274	rs4349946	T	C	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	30242747	rs7813046	G	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	30464719	.	C	CA	51.80	.	AC=1;AF=0.500;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	30469805	rs7815625	A	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	30537223	rs10715710	CT	C	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-0.827;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr8	30539623	rs2250192	T	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	30541915	rs1465477	C	T	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	30546636	rs2551715	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	30560887	rs3779647	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	30601610	rs3217273	TC	T	497.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	30601805	rs2278092	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	30608773	rs1991111	A	G	114.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	30608976	rs2911690	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	30609061	rs2911689	T	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	30609078	rs2911688	A	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	30620840	rs11388922	G	GT	667.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	30620964	rs2956010	T	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	30623996	rs2956016	T	C	290.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	30695226	rs2720593	C	T	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	30702738	rs76147771	C	T	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	30916085	rs2737316	T	C	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	30922346	rs2725346	C	T	143.10	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:1,6:0.86:7
chr8	30958353	rs3087419	CT	C	777.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	30977696	rs4987034	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	30981971	rs3087417	G	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.32;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	30999122	rs3024239	C	T	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	31004465	rs17652297	T	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	31004470	rs117894244	G	A	183.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	31005017	rs3087415	T	TC	2241.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	31024654	rs1346044	T	C	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	32453358	rs3924999	G	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	32579646	rs7845510	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	33311091	rs7009689	T	C	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	33313329	rs2732315	G	A	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	33347907	rs2732274	T	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	33355886	rs2676419	G	T	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	33356074	rs6468171	A	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	33369944	rs2304748	T	C	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	33369994	rs3098657	A	G	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	33370985	rs2581896	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	33371146	rs2581897	T	G	6589.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	33371150	rs2581898	A	G	6508.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	33371199	rs2581899	T	C	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	33416189	rs3735950	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	33416222	rs3735951	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	33416303	rs35879627	G	GA	188.19	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr8	35425870	rs2589340	T	A	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr8	36664834	rs1079678	G	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.128;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:403,79:0.16:482
chr8	36691189	rs10089594	C	T	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=854;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.001;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:725,125:0.15:850
chr8	36698552	.	GT	G	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DP=503;ExcessHet=3.0103;FS=5.624;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.732;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:175,90:0.34:265
chr8	36746791	.	AT	A	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DP=609;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.482;QD=0.60;ReadPosRankSum=-0.247;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:483,80:0.14:563
chr8	36767085	rs62490754	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.483;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:56,10:0.15:66
chr8	36767145	rs13257544	C	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr8	36776267	rs10108041	T	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.151;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.370;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:130,21:0.14:151
chr8	36780209	rs1010669	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.673;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:70,12:0.15:82
chr8	36786379	rs17400167	C	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.446;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr8	36786396	rs10089755	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.764;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.799;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr8	36925165	rs11781526	A	G	8124.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:54,340:0.86:394
chr8	37455990	rs1008547	G	C	15723.77	.	AC=1;AF=0.500;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	0/1:111,687:0.86:798
chr8	37611414	.	CT	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.834;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:141,35:0.20:176
chr8	37620076	rs6468438	A	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	37686749	rs6468442	A	G	10548.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr8	37692704	rs113270504	G	A	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.597;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:434,91:0.17:525
chr8	37693302	rs10101560	T	C	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr8	37699195	rs4976898	C	G	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	37706057	rs11777510	A	T	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.607;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:291,50:0.15:341
chr8	37728017	rs7817179	A	G	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	37728017	.	ATT	GTG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=44;NR=77;PP=2947;QD=20;SC=CTTGGTGGCCATTGCATTCAT;SbPval=0.51;Source=Platypus;TC=122;TCF=44;TCR=78;TR=121;WE=37728027;WS=37728007;set=Platypus	GT:AD:AF:DP	1/1:1,121:0.99:122
chr8	37728019	rs7820872	T	G	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=1.381;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	37730368	rs12541651	G	A	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=8.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.375;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:297,60:0.17:357
chr8	37821853	rs2071493	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.936;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr8	37823798	rs4994	A	G	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.338;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:498,92:0.16:590
chr8	37888017	rs3750243	C	G	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=33.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=1.583;SOR=3.530;set=HC	GT:AD:AF:DP	0/1:21,86:0.80:107
chr8	37917273	.	C	CA	1003.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.678;QD=11.53;ReadPosRankSum=0.365;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:20,67:0.77:87
chr8	37963239	rs2073351	C	T	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:11,104:0.90:115
chr8	37964024	rs112972804	C	CT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.953;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.480;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:81,22:0.21:103
chr8	37985897	rs2843740	A	G	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=3.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.251;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:356,89:0.20:445
chr8	37986561	rs2517394	G	C	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr8	38003787	rs2720050	T	C	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=1285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=1.259;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:1084,193:0.15:1277
chr8	38005835	rs2229620	T	C	11160.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr8	38006330	rs35520501	TC	T	13652.73	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr8	38028726	rs2843739	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	38029708	rs2843738	G	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr8	38033989	rs2270376	G	C	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:23,116:0.83:139
chr8	38095662	rs2306899	C	T	8700.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:66,384:0.85:450
chr8	38103239	rs7006757	T	A	10298.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:72,427:0.86:499
chr8	38110159	.	C	CA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=1.039;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr8	38110215	rs2898674	T	C	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:27,164:0.86:191
chr8	38245598	rs35044708	CT	C	4087.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=9.430;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.166;QD=8.98;ReadPosRankSum=-0.321;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:132,323:0.71:455
chr8	38254696	.	C	CT	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.199;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:91,43:0.32:134
chr8	38369831	rs4733951	A	C	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	38370200	rs146268311	GAGACACAGAC	G	1826.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr8	38385795	rs2445020	T	C	5875.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	38458371	rs3802323	G	T	13203.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;MQ=59.76;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr8	38458552	.	G	GTCT	20835.73	.	AC=2;AF=1.00;AN=2;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr8	38458659	rs327934	C	T	8852.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr8	38458696	rs7812668	T	C	4655.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:29,191:0.87:220
chr8	38458802	rs327935	A	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.236;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.033;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr8	38697649	rs13262797	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	38709553	rs1135990	C	T	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	38803551	rs62504403	T	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.815;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.427;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:164,32:0.16:196
chr8	38809663	rs6984871	A	C	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr8	38810707	rs7824764	A	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.227;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=5.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-1.678;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:193,25:0.11:218
chr8	38827185	rs5891050	GC	G	12469.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr8	38835456	rs4733960	T	C	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	38835666	rs4733961	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	38839302	.	AT	A	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=5.621;QD=0.58;ReadPosRankSum=-2.263;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:306,69:0.18:375
chr8	38848850	rs4733895	C	T	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	38851204	rs28626007	A	C	16093.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr8	38854041	rs10105311	C	T	6657.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr8	38865692	rs35261462	C	CT	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr8	38872186	rs7833611	C	A	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	38884342	rs10652213	G	GTTCT	17014.73	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr8	38899772	rs34138150	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	38911953	rs9643905	C	A	8850.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr8	38912121	rs67125687	GA	G	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-1.218;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:127,80:0.39:207
chr8	38928984	.	CTT	C	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=3.29;ReadPosRankSum=1.476;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr8	38940143	.	AT	A	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.817;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=3.999;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.448;QD=0.46;ReadPosRankSum=1.018;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr8	38940292	rs72459173	GAAATCTCAGGACTAGA	G	16250.73	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr8	38959498	rs4733905	G	A	12348.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr8	38987347	rs9650316	T	C	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	38988475	rs71218310	C	CTTTTT	522.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.72;ReadPosRankSum=0.103;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,16:0.94:17
chr8	39004462	rs35275553	T	C	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	39004620	rs35335280	A	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	39007200	rs72640066	C	T	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	39022522	rs10088854	G	A	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	39080632	rs7845771	C	G	15063.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr8	39080824	rs4476978	T	A	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	39114676	.	G	GT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.940;QD=1.45;ReadPosRankSum=-1.797;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:90,27:0.23:117
chr8	39142449	.	C	T	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-0.083;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:382,54:0.12:436
chr8	39311600	rs7813010	C	T	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr8	39311677	rs7834545	T	C	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	39312886	rs10097769	G	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=26.76;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	39330916	rs142026482	ATC	A	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.588;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:171,21:0.11:192
chr8	39442292	rs7007924	T	G	12662.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr8	39463063	rs4236751	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	39463266	rs12156300	T	G	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	39487022	rs3735881	C	T	10895.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr8	39495325	rs3824144	G	A	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	39496029	rs12708194	T	C	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	39496202	rs13278646	G	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	39503079	rs6474161	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	39505826	rs3735880	C	A	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	39521419	rs6988389	T	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	39525681	rs61753675	T	C	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.387;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.906;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:590,101:0.15:691
chr8	39525750	rs2305392	C	A	9393.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr8	39607105	rs77172402	C	T,CATGT	5217.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.94;MQRankSum=0.320;QD=48.76;ReadPosRankSum=0.347;SOR=0.775;set=HC	GT:AD:AF:DP	1/2:4,12,91:0.11,0.85:107
chr8	39618637	rs10093751	G	T	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	39618865	rs10097616	C	G	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	39644691	rs3779718	C	G	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	39678723	rs7830439	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:16,56:0.78:72
chr8	39694871	rs11786521	T	C	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:14,51:0.78:65
chr8	39775377	rs59167028	CT	C	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=1.127;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr8	39777529	rs7820268	C	T	3864.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:50,164:0.77:214
chr8	39779989	rs10108662	C	A	4076.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:39,164:0.81:203
chr8	39780922	rs10593932	CAAA	C,CA	4785.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.942;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;MQRankSum=0.417;QD=26.01;ReadPosRankSum=0.280;SOR=1.380;set=HC	GT:AD:AF:DP	1/2:7,136,41:0.74,0.22:184
chr8	39785321	rs3739319	G	A	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:41,191:0.82:232
chr8	39821386	rs2543052	C	T	6061.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:49,232:0.83:281
chr8	39842443	rs140841420	C	CTTAT	1462.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr8	39842462	.	A	ATTTT	499	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=7;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=2;NR=17;PP=499;QD=26.8947368421;SC=TTATTTATTTATTTTCAGAGA;SbPval=0.65;Source=Platypus;TC=26;TCF=3;TCR=23;TR=19;WE=39842470;WS=39842452;set=Platypus	GT:AD:AF:DP	0/1:7,19:0.73:26
chr8	39843139	rs2729472	A	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	39843147	rs187323746	T	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-1.615;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr8	39862881	rs10109853	C	T	9339.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,342:0.99:344
chr8	39871036	rs2955897	A	G	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	39871298	rs5891075	T	TTAA,TTTAA	8270.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;QD=39.01;SOR=1.514;set=HC	GT:AD:AF:DP	1/2:0,69,143:0.33,0.67:212
chr8	39872668	rs2955902	C	T	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	39872676	rs5891076	GA	G	5034.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:9,236:0.96:245
chr8	39872866	rs2981161	A	C	22344.77	.	AC=2;AF=1.00;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	1/1:1,808:1.00:809
chr8	39872935	rs4503083	T	A	15088.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:141,646:0.82:787
chr8	39873188	rs2981162	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	40011079	rs6474226	G	A	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr8	40389823	rs1429965	C	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=0.000;DB;DP=953;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=1.168;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:787,142:0.15:929
chr8	40389842	rs1429966	T	C	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.786;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.667;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:676,129:0.16:805
chr8	40389933	rs4038741	TAA	T	1031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=8.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-3.252;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:210,41:0.16:251
chr8	40438757	rs17851751	T	C	19873.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,729:1.00:729
chr8	40554742	rs11781516	C	T	4692.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:27,196:0.88:223
chr8	40554994	rs12546561	C	G	1057.31	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:5,40:0.89:45
chr8	40665997	rs1512214	A	G	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	40666094	.	C	CA	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DP=503;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.883;QD=0.82;ReadPosRankSum=1.921;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:380,82:0.18:462
chr8	40666189	rs11777437	T	C	8739.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr8	40666257	rs11776726	A	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	41128710	rs11779707	T	C	8573.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:77,363:0.82:440
chr8	41166637	rs3832595	GGCT	G	16464.73	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:63,403:0.86:466
chr8	41293222	rs72645589	A	G	5577.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:34,225:0.87:259
chr8	41297464	rs4736978	T	G	8015.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:62,336:0.84:398
chr8	41297486	rs10637700	T	TTTTG,TTTTGTTTGTTTG	5927.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=306;set=Intersection	GT:AF:DP	1/2:0.17,0.83:126
chr8	41348527	rs72633892	A	G	4957.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:39,212:0.84:251
chr8	41363388	rs79843282	C	T	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:22,128:0.85:150
chr8	41387921	rs7819949	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.153;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr8	41391588	rs10096250	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr8	41391704	rs10096369	A	G	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	41391936	rs33975171	TA	T	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=1.023;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:53,21:0.28:74
chr8	41393799	rs11779810	T	C	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr8	41517958	rs59908561	A	AG	7739.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr8	41519248	rs516946	T	C	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.488;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=1.218;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:700,123:0.15:823
chr8	41519462	rs515071	A	G	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.651;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:571,93:0.14:664
chr8	41521663	rs563118	T	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.000;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:392,76:0.16:468
chr8	41525914	rs750625	C	T	25871.77	.	AC=1;AF=0.500;AN=2;DB;DP=1372;set=Intersection	GT:AD:AF:DP	0/1:241,1118:0.82:1359
chr8	41529856	rs508112	A	G	16454.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:2,626:1.00:628
chr8	41547683	rs7835812	T	C	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:18,73:0.80:91
chr8	41547748	rs7816734	G	A	5086.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:55,212:0.79:267
chr8	41548003	rs10093583	T	C	12659.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:128,554:0.81:682
chr8	41548207	rs6987255	C	T	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.67;ReadPosRankSum=1.376;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:15,58:0.79:73
chr8	41548207	.	CAC	TAT	1867	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=25;MQ=60.0;NF=10;NR=43;PP=1867;QD=36.2352429219;SC=CTCTCCAAGACACACCCTGCC;SbPval=0.5;Source=Platypus;TC=71;TCF=13;TCR=58;TR=53;WE=41548217;WS=41548197;set=Platypus	GT:AD:AF:DP	0/1:18,53:0.75:71
chr8	41548209	rs6987261	C	T	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.074;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.67;ReadPosRankSum=1.312;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:15,58:0.79:73
chr8	41550466	rs113547907	GC	G	4974.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:38,157:0.81:195
chr8	41551728	rs13438835	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:14,63:0.82:77
chr8	41553835	rs2304883	G	A	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:24,106:0.82:130
chr8	41553928	rs504574	C	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=3.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.451;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:331,49:0.13:380
chr8	41555740	rs492008	A	G	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:25,107:0.81:132
chr8	41559609	rs2304880	G	A	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.329;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:379,75:0.17:454
chr8	41562081	rs72638993	C	T	2354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=0.607;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:26,101:0.80:127
chr8	41563685	rs1137177	G	A	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.882;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:249,53:0.18:302
chr8	41571963	rs74771278	A	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr8	41574736	rs575817	A	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr8	41577121	rs7823698	C	G	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,89:0.74:120
chr8	41580906	rs2304874	G	A	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=1.446;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:138,40:0.22:178
chr8	41585384	rs2304872	T	G	21425.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:1,784:1.00:785
chr8	41585571	rs1872877	C	T	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.42;SOR=1.914;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	41585571	.	CGCTACG	TGCTACA,TGCTACG	2496	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=4,53;NR=19,131;PP=188,2496;QD=10.4986032549;SC=CCACTGGGCCCGCTACGGGAC;SbPval=0.91;Source=Platypus;TC=186;TCF=54;TCR=132;TR=23,184;WE=41585585;WS=41585561;set=Platypus	GT:AF:DP	0/1:0.12:186
chr8	41585577	rs2304870	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.336;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=4.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.364;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:142,25:0.15:167
chr8	41591534	rs61753680	C	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=862;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.804;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:747,112:0.13:859
chr8	41615429	rs486223	G	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	41686017	rs13439740	C	T	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=1.325;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:589,109:0.16:698
chr8	41798202	rs2929896	G	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr8	41804047	rs139721599	C	CAT	1937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=64.73;MQRankSum=3.087;QD=26.54;ReadPosRankSum=1.242;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:13,60:0.82:73
chr8	41834902	rs34473679	T	C	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:15,88:0.85:103
chr8	42013563	rs150778126	T	TATG	22801.73	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr8	42037924	rs2020922	T	A	12135.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr8	42044954	rs1058720	G	A	9629.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr8	42045655	rs2070713	C	T	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	42172017	rs7814513	C	G	8483.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr8	42175303	rs2294100	A	T	11687.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr8	42178131	rs16891219	G	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:94,34:0.27:128
chr8	42186579	rs2272732	T	C	5504.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	42188550	rs1057741	A	G	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	42196441	rs3136717	C	T	10108.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr8	42227777	rs67383545	GTT	G	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.226;QD=3.09;ReadPosRankSum=-0.675;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr8	42294592	rs79577461	C	T	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.567;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:267,64:0.19:331
chr8	42295130	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-1.024;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr8	42323207	rs376182049	CA	C	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=1.862;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:119,45:0.27:164
chr8	42328491	.	C	CA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.138;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr8	42404040	rs2974349	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr8	42552633	rs4950	G	A	9476.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:89,403:0.82:492
chr8	42587796	rs4954	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	42608199	rs2304297	G	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.875;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr8	42609433	rs76874443	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.971;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr8	42610184	.	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=4.991;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.044;QD=2.19;ReadPosRankSum=-1.450;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr8	42614378	rs892413	C	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.340;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.294;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:115,30:0.21:145
chr8	42711606	rs7014595	A	G	6866.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:73,289:0.80:362
chr8	42751253	rs191485129	G	A	4665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=2.063;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:54,206:0.79:260
chr8	42761230	.	CAA	C,CA	595.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.92;MQRankSum=0.000;QD=11.24;ReadPosRankSum=1.946;SOR=0.675;set=HC	GT:AD:AF:DP	1/2:10,23,20:0.43,0.38:53
chr8	42761288	.	TC	T	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.051;SOR=0.101;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr8	42780832	rs34821062	A	AT	432.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr8	42798394	.	G	GT	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.701;QD=2.14;ReadPosRankSum=-1.432;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:134,47:0.26:181
chr8	42823480	rs6999489	G	T	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:22,74:0.77:96
chr8	42849423	rs76810499	T	TTATAACTG	3190.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:27,74:0.73:101
chr8	42862993	.	G	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DP=562;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.479;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:481,78:0.14:559
chr8	42868455	rs5891200	CT	C	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.746;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chr8	42882555	rs111931018	A	ATTTGT	6611.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr8	42919458	rs35209691	AT	A	925.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:12,49:0.80:61
chr8	42932643	rs58729413	G	C	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:31,157:0.84:188
chr8	42959007	rs5024011	C	A	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr8	42977591	rs34040483	G	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.799;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:538,88:0.14:626
chr8	42995811	rs62517610	C	T	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	43002052	rs375505816	CT	C	925.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.331;QD=4.04;ReadPosRankSum=-0.479;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:133,96:0.42:229
chr8	43013936	rs10958738	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.401;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:100,18:0.15:118
chr8	43053062	rs148632988	G	C	6392.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:78,289:0.79:367
chr8	43054553	rs1126058	T	C	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	43147975	rs66932611	T	G	4285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.538;QD=29.76;ReadPosRankSum=-0.548;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:35,109:0.76:144
chr8	43147986	rs35280175	TCG	T	4186.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:30,104:0.78:134
chr8	43173820	.	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=1.085;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:57,8:0.12:65
chr8	47759712	rs3849804	T	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.425;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:273,50:0.15:323
chr8	47842316	rs884920	G	A	865.81	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr8	47842901	rs6995866	A	G	4890.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:52,211:0.80:263
chr8	48114035	rs4379458	G	C	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:40,184:0.82:224
chr8	48173607	rs58299877	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.185;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.620;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr8	48320563	rs34569190	AT	A	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.338;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=1.423;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:125,33:0.21:158
chr8	48613061	rs16930248	G	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.238;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.140;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:231,38:0.14:269
chr8	48614642	rs34156562	CTCTCTCTCTCTCTCTCTT	C	264.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.500;MQ=61.01;MQRankSum=2.074;QD=7.15;ReadPosRankSum=3.254;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr8	48614647	rs369245708	TCTCTCTCTCTCTTACACACA	T	34.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=-1.077;QD=0.63;ReadPosRankSum=0.187;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:49,6:0.11:55
chr8	48805816	rs11411516	A	AG	14572.73	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr8	48846519	rs1231202	T	C	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	48866788	rs1231203	T	G	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	48885436	rs762679	T	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.437;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:165,28:0.15:193
chr8	49641784	rs1482261	A	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	49643243	rs966703	A	G	7091.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr8	49987230	rs2292399	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.924;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:115,23:0.17:138
chr8	49987910	rs6984804	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.573;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr8	51306704	rs7015950	A	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.796;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:145,41:0.22:186
chr8	51362462	rs1481475	A	G	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	51363078	rs7817955	C	T	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	51363430	rs12542191	A	T	254.92	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,14:0.88:16
chr8	51442638	rs142887656	T	TTGA	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=0.691;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:99,26:0.21:125
chr8	51571370	rs1911831	G	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	51617430	rs7003356	T	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	51664541	rs11429292	G	GT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.070;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr8	51664842	rs6473337	C	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr8	52284654	rs5891410	C	CA	1100.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr8	52321243	rs2977020	T	C	6749.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:126,275:0.69:401
chr8	52325879	rs1560511	T	G	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:62,182:0.75:244
chr8	52336041	rs2060107	G	C	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	52361772	rs1431636	G	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	52366200	rs6473599	G	A	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr8	52396048	rs1431632	C	T	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=1.775;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:17,49:0.74:66
chr8	52412226	rs755311	G	T	6385.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:81,284:0.78:365
chr8	52721958	rs13252785	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	52730521	rs4401853	C	T	15272.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr8	52733050	rs12335014	T	A	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr8	52733076	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=26;MQ=53.32;NF=74;NR=36;PP=2962;QD=20;SC=TTTCATCCTCTTCACTGTCTA;SbPval=0.9;Source=Platypus;TC=315;TCF=179;TCR=136;TR=110;WE=52733084;WS=52733040;set=Platypus	GT:AD:AF:DP	0/1:205,110:0.35:315
chr8	52733128	rs62506083	T	G	3924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.988;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=15.709;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-12.531;QD=13.97;ReadPosRankSum=2.975;SOR=1.399;set=HC	GT:AD:AF:DP	0/1:154,127:0.45:281
chr8	52733143	rs111785933	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.608;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-3.758;QD=0.19;ReadPosRankSum=3.262;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:246,20:0.08:266
chr8	52733148	rs76104220	C	T	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.282;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=4.354;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=-6.137;QD=4.05;ReadPosRankSum=3.434;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:199,62:0.24:261
chr8	52733209	rs202074278	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-3.174;QD=0.33;ReadPosRankSum=-0.148;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:184,16:0.08:200
chr8	52733214	rs200377849	A	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-3.132;QD=0.33;ReadPosRankSum=-0.983;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:174,15:0.08:189
chr8	52733340	rs35006940	A	AT	945.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	52746153	rs9298462	C	T	7518.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr8	52811681	rs10106734	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	52811758	rs13263909	C	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	53029130	rs12334321	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr8	53447256	rs1440798	C	A	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	53450969	rs13280500	A	C	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.565;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr8	53452359	rs34430102	T	TA	2259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.672;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.467;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:35,142:0.80:177
chr8	53452488	rs138991643	GA	G	6269.73	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:62,190:0.75:252
chr8	53454826	rs16917962	C	A	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.730;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:256,92:0.26:348
chr8	53543090	rs57977265	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=0.187;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:83,19:0.19:102
chr8	53548691	rs7818347	T	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	53570529	rs12708142	C	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	53853160	rs75387626	T	C	2917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.564;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:553,195:0.26:748
chr8	54628736	rs3735833	C	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr8	54745538	rs6991513	C	G	5873.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr8	54764656	rs28369296	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:103,46:0.31:149
chr8	54866491	rs6981243	C	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr8	55371080	rs71554162	C	CAG	2666.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr8	55537138	rs429668	T	C	488.79	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr8	55539057	rs444772	G	A	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:40,104:0.72:144
chr8	55539395	rs2293869	A	T	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.639;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:337,121:0.26:458
chr8	55541450	rs446227	G	A	6813.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:104,284:0.73:388
chr8	55541513	rs414352	T	C	8238.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:123,354:0.74:477
chr8	55541617	rs441800	A	G	8239.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:119,335:0.74:454
chr8	55542540	rs61739567	G	A	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.610;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:103,23:0.18:126
chr8	55565241	rs417969	G	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr8	55586301	rs4014240	A	AAAC	1086.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr8	55590975	rs382476	G	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	55592336	rs405226	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	56015893	.	G	GCTA	2014.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=7.096;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.138;QD=9.50;ReadPosRankSum=-0.356;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:150,62:0.29:212
chr8	56047961	rs78435240	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr8	56076791	rs2291183	G	A	1836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=0.860;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:406,123:0.23:529
chr8	56076886	rs2291184	A	G	1613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.309;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:251,95:0.27:346
chr8	56185702	.	CTGTGTGTGTG	C	690	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=24;MQ=59.88;NF=0;NR=16;PP=690;QD=43.3125;SC=GAAAAGAGGACTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=40;TCF=0;TCR=40;TR=16;WE=56185723;WS=56185692;set=Platypus	GT:AD:AF:DP	1/0:24,16:0.40:40
chr8	56637895	rs10098084	T	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.812;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr8	56656195	rs7836019	T	C	6170.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	56657801	rs4738457	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr8	56686224	rs1818	T	C	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	56792586	rs1050855	G	A	8894.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:148,397:0.73:545
chr8	56792685	rs167999	G	A	5264.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:103,253:0.71:356
chr8	56858888	rs57006402	G	A	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=0.052;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:19,51:0.73:70
chr8	56860025	rs16922461	G	A	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:32,80:0.71:112
chr8	56862946	rs66913087	T	C	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:26,105:0.80:131
chr8	56863151	rs7813271	A	G	9155.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:165,393:0.70:558
chr8	56863206	rs118169544	A	T	2091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=2.629;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:369,127:0.26:496
chr8	56882183	rs1027987	A	G	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr8	56882471	rs1027986	A	G	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:38,108:0.74:146
chr8	56911861	rs2175487	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	56985814	rs1050403	T	C	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:43,136:0.76:179
chr8	56986417	rs17814456	A	G	9454.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:103,404:0.80:507
chr8	56986531	rs2976045	C	G	2958.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:30,117:0.80:147
chr8	56986737	rs2976044	A	G	4910.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:65,205:0.76:270
chr8	57125270	rs6474051	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	57295200	rs7002482	C	T	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:48,162:0.77:210
chr8	57302927	rs10693785	A	AT	423.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.901;QD=8.31;ReadPosRankSum=-0.819;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr8	57335956	.	C	CT	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.852;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:62,33:0.35:95
chr8	57349380	rs13268089	C	T	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:49,113:0.70:162
chr8	57353826	rs3839874	AG	A	2020.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr8	57358563	rs3840716	CG	C	2038.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:26,69:0.73:95
chr8	57878990	rs2135987	T	C	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr8	59343282	rs11989326	T	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:19,62:0.77:81
chr8	59345705	rs16923472	G	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr8	59347184	rs1993453	A	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:25,75:0.75:100
chr8	59411042	rs2162459	G	A	5668.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:104,252:0.71:356
chr8	59512334	rs2680903	G	A	6861.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:102,301:0.75:403
chr8	59514105	rs36078053	G	GAAA	1669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=2.155;QD=16.53;ReadPosRankSum=1.246;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:40,61:0.60:101
chr8	59515756	rs2255834	G	A	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:45,132:0.75:177
chr8	59518439	.	C	CA	656.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.918;QD=6.57;ReadPosRankSum=0.698;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:47,53:0.53:100
chr8	59549857	.	C	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-1.422;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:330,46:0.12:376
chr8	59571986	rs144534227	C	T	2312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.108;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:368,138:0.27:506
chr8	59739333	rs4737522	C	T	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.465;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:234,66:0.22:300
chr8	59739438	rs56215946	A	C	3880.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:60,178:0.75:238
chr8	59750932	rs72649459	C	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr8	59764368	rs3837195	CAATA	C	382.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.79;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	59852168	rs3832587	A	AAC	1435.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr8	59872615	rs3780001	T	G	5552.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:83,233:0.74:316
chr8	61139280	rs12549573	C	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	61139319	rs12549574	C	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	61178574	rs7464181	T	C	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=6.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.694;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:229,90:0.28:319
chr8	61178676	rs5891756	CT	C	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=1.075;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:53,34:0.39:87
chr8	61192534	rs28429093	C	T	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr8	61193453	rs7002846	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr8	61193522	rs7002871	A	G	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=8.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.628;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:141,54:0.28:195
chr8	61193526	rs7003287	G	A	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=8.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-1.422;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:148,56:0.27:204
chr8	61193588	rs10086200	C	T	2578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-1.187;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:409,157:0.28:566
chr8	61193760	rs10101374	T	G	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=5.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.346;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:162,64:0.28:226
chr8	61193809	rs10086341	A	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:83,36:0.30:119
chr8	61655690	rs7836586	G	A	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	61707725	rs4540437	G	A	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	61713126	rs5891777	A	ATGGACT	8808.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr8	61713231	rs3890803	C	A	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr8	61714245	rs10448027	A	G	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.664;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	61732521	rs6471902	A	G	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	61734295	rs4509369	A	G	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=-0.315;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:31,69:0.69:100
chr8	61748893	rs7005873	C	A	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	61750860	rs7844902	A	G	6614.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	61764076	rs4342642	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	61851466	rs3748648	T	C	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:27,78:0.74:105
chr8	61878921	rs35585682	T	A	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	62003453	rs1367972	A	G	9467.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr8	62003547	rs35220668	G	GC	4351.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:52,196:0.79:248
chr8	62003551	rs201939318	C	CT	683.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=2.932;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:206,51:0.20:257
chr8	62289060	rs10957192	C	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr8	62371260	rs2291607	C	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	62411925	rs71559334	G	GAAAT	7998.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	62416074	rs7005617	G	A	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	62438530	rs4738904	A	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	62460886	rs10113272	A	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.35;SOR=4.921;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	62460894	rs16927479	G	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	62475160	rs3802287	A	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	62475276	rs3802286	C	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	62475518	rs3824269	G	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	62479934	rs10090754	C	T	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	62496421	rs35353831	A	AT	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr8	62531670	rs35550451	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	62545288	rs2882462	C	T	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	62550924	rs34108497	T	TA	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.805;QD=1.58;ReadPosRankSum=0.524;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr8	62563764	rs7016141	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	62595068	rs3750278	C	T	6416.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr8	62602295	.	C	CA	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.102;QD=1.22;ReadPosRankSum=0.655;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:205,52:0.20:257
chr8	62626962	rs3829051	C	T	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	62627004	rs3750279	A	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	62627510	rs4272369	C	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	63161462	rs2272014	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr8	63161829	rs5020321	C	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr8	63257441	rs4442138	T	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	63295978	rs62509214	G	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr8	63296132	rs10808724	T	G	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.72;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	63296132	.	TGAAGAA	GGAAGAA,GGAAGAT	1470	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=22;MQ=60.0;NF=76,50;NR=66,44;PP=323,1470;QD=2.51951558132;SC=CCTTTTGGTTTGAAGAACATG;SbPval=0.57;Source=Platypus;TC=144;TCF=77;TCR=67;TR=142,94;WE=63296146;WS=63296122;set=Platypus	GT:AF:DP	0/1:0.99:144
chr8	63296138	rs62509215	A	T	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.882;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.299;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:53,107:0.67:160
chr8	63502434	rs72423486	TTGTGTGTGTGTGTG	T	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=-0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.674;QD=12.57;ReadPosRankSum=-2.036;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr8	63659610	rs1319275	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.115;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:137,30:0.18:167
chr8	63659635	rs4739003	G	A	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:27,115:0.81:142
chr8	63659754	rs16929506	T	C	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr8	63659801	rs72538970	CAG	C	594.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr8	63948185	rs34822356	TA	T	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.831;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.103;QD=2.61;ReadPosRankSum=-0.030;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:117,64:0.35:181
chr8	63948265	rs11786893	C	T	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:63,132:0.68:195
chr8	63978658	rs5891887	TA	T	5133.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr8	64098729	rs58419856	A	AG	4548.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	64122225	.	G	GT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.318;QD=4.16;ReadPosRankSum=0.708;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr8	65290650	rs298212	C	T	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:90,175:0.66:265
chr8	65493429	rs7016250	T	G	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.515;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:194,61:0.24:255
chr8	65537104	.	GA	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=4.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.778;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:112,24:0.18:136
chr8	65711004	rs7842714	T	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr8	66439551	rs7825011	T	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	66442851	rs200521355	C	CA	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=1.012;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:24,25:0.51:49
chr8	66517486	rs3765205	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr8	66525548	rs11559265	T	C	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr8	66620359	rs13274205	G	A	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.855;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:202,69:0.25:271
chr8	67025700	rs16932510	G	T	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:40,120:0.75:160
chr8	67064654	rs7843605	A	G	2884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=4.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-0.249;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:35,114:0.77:149
chr8	67066241	rs77337238	T	C	2834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.649;QD=19.28;ReadPosRankSum=-1.418;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:39,108:0.73:147
chr8	67068131	rs2446433	T	C	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	67089425	rs6159	T	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:23,78:0.77:101
chr8	67105379	rs56266342	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr8	67105436	rs7003450	C	G	1904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.589;QD=18.49;ReadPosRankSum=0.539;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:25,78:0.76:103
chr8	67105449	rs11357679	CT	C	1179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.752;QD=9.67;ReadPosRankSum=-0.740;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:41,81:0.66:122
chr8	67108896	rs16932632	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr8	67109101	rs11990370	G	T	6646.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:91,272:0.75:363
chr8	67109225	rs1044938	T	C	6289.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:91,267:0.75:358
chr8	67109297	rs1044942	A	G	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:37,126:0.77:163
chr8	67342031	rs137894990	T	C	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:107,247:0.70:354
chr8	67411019	rs2251827	T	C	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	67478431	rs61729530	T	G	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.414;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr8	67478898	rs73261763	C	T	135.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,10:0.20:49
chr8	67492341	rs11993306	T	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-1.878;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:130,37:0.22:167
chr8	67492691	rs11990331	C	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.800;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:92,25:0.21:117
chr8	67514020	rs58806068	A	G	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.143;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:162,63:0.28:225
chr8	67577670	rs3808602	G	A	3752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.254;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:542,216:0.28:758
chr8	67592249	rs16933026	G	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.336;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:177,58:0.25:235
chr8	67680194	rs6472285	A	G	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:360,148:0.29:508
chr8	67705826	.	C	CT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.878;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr8	67710922	rs140795461	A	G	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=0.309;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr8	67710925	rs55784133	G	A	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=0.737;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr8	67748231	rs35809374	G	A	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-3.537;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:128,44:0.26:172
chr8	67752161	rs16933071	C	T	3531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.674;ClippingRankSum=0.000;DB;DP=706;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.585;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:502,199:0.28:701
chr8	67755920	rs7008720	C	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	67786817	rs116671744	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:59,20:0.25:79
chr8	67786897	rs77569237	A	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr8	67793056	rs16933092	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr8	67813482	rs139959817	G	A	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.744;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:168,51:0.23:219
chr8	67813633	rs2358008	A	G	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	67873669	.	G	A	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-1.063;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:98,50:0.34:148
chr8	67883131	rs73691161	T	C	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.098;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:218,74:0.25:292
chr8	67970243	rs6997490	A	G	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	67971452	rs11557200	T	C	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.862;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:156,56:0.26:212
chr8	67973516	rs74713534	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr8	67974251	rs115246389	T	C	7513.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:68,303:0.82:371
chr8	67974280	rs1138476	T	C	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-1.429;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:291,68:0.19:359
chr8	67976754	rs114350375	T	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=1.391;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:158,62:0.28:220
chr8	67999025	rs56115408	A	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.027;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:92,21:0.19:113
chr8	68062182	rs11296619	CT	C	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=9.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=2.661;SOR=1.837;set=HC	GT:AD:AF:DP	0/1:16,53:0.77:69
chr8	68066164	rs11784423	T	A	534.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.39;ReadPosRankSum=1.263;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr8	68071209	rs58448590	C	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.547;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr8	68074137	rs16933182	G	A	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=2.302;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:319,104:0.25:423
chr8	68105605	rs59061775	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:96,42:0.30:138
chr8	68113634	rs147798721	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=0.463;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr8	68137387	rs60324950	A	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.660;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr8	68138191	rs73693149	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,28:0.31:89
chr8	68138467	rs73693150	G	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:70,30:0.30:100
chr8	68138508	rs3837215	CCT	C	565.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr8	68145191	.	TA	T	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.284;QD=3.39;ReadPosRankSum=-1.761;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:100,39:0.28:139
chr8	68151226	rs58721249	GT	G	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.037;QD=2.59;ReadPosRankSum=0.357;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:57,27:0.32:84
chr8	68151249	rs57931195	T	A	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=0.111;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr8	68169922	rs55908039	T	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:64,22:0.26:86
chr8	68211691	rs35570525	T	TA	1406.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	68395836	rs72655000	T	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=1.257;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr8	68536470	rs10957393	A	G	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	68864527	rs141523436	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr8	68864557	rs10093734	G	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:30,7:0.19:37
chr8	68929993	rs12549702	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr8	68965521	rs10504417	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.732;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.976;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:90,21:0.19:111
chr8	68968166	rs1434774	C	A	2977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=0.910;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:323,96:0.23:419
chr8	68968171	rs1434775	G	A	2961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.885;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:328,95:0.22:423
chr8	68981979	rs6990381	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr8	68984675	rs6985922	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-1.633;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr8	68993013	rs12682458	AT	GC	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.799;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=0.520;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:80,30:0.27:110
chr8	68993188	rs12682493	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	68995404	rs1030751	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr8	68995410	rs79583091	TG	T	334.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr8	68995468	rs1030752	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,29:0.32:91
chr8	68995633	rs1030753	A	G	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=6.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.349;SOR=1.607;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr8	68999925	rs34854177	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr8	68999938	rs4382459	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.662;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr8	69002965	rs12544121	A	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	69003009	rs34882769	GT	G	1595.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	69009268	rs3812458	C	T	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.655;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:153,51:0.25:204
chr8	69009561	.	C	CTT	122.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.55;ReadPosRankSum=-0.000;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr8	69012364	rs1529819	G	A	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	69013818	rs10097733	C	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.907;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=6.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.894;SOR=1.618;set=HC	GT:AD:AF:DP	0/1:81,20:0.20:101
chr8	69013865	rs10098030	G	A	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	69015242	rs1014663	T	C	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	69015965	rs78241729	G	A	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=1.160;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:137,51:0.27:188
chr8	69016055	rs13262734	A	G	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	69020496	rs4260880	T	C	9619.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr8	69031299	rs7015786	A	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:53,18:0.25:71
chr8	69033084	rs1160174	G	A	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr8	69104521	rs6472389	A	G	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=1.454;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	69136871	rs940664	T	A	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.060;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:265,108:0.29:373
chr8	69136959	rs940665	G	A	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=5.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-1.496;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:244,86:0.26:330
chr8	69143417	rs16934364	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr8	69143520	rs2280636	A	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=2.833;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr8	69143589	rs2280637	A	G	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-2.510;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:165,54:0.25:219
chr8	69143712	rs10581964	CTT	C	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.079;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr8	69217174	rs2692030	T	A	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.392;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr8	69358772	rs16934634	A	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr8	69688772	rs7833828	G	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr8	69699756	rs16935065	G	A	4719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.627;QD=16.56;ReadPosRankSum=0.642;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:79,206:0.72:285
chr8	69728008	rs16935099	A	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:89,42:0.32:131
chr8	69730488	rs16935109	G	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.074;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr8	70498501	rs2241882	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-2.465;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr8	70505272	rs4737996	A	G	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:257,117:0.31:374
chr8	70513855	rs752040	A	G	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.437;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=1.253;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:227,81:0.26:308
chr8	70514116	rs1155965	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr8	70516940	rs4737998	G	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr8	70539911	rs4738002	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr8	70540216	rs3802275	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.178;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-0.842;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr8	70554689	rs7814130	A	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	70571313	rs3802278	G	A	6712.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:86,273:0.76:359
chr8	70571531	rs6990375	G	A	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:60,189:0.76:249
chr8	70964399	rs10089937	A	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	70967607	rs3750225	T	C	8075.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr8	70967727	rs3750226	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	70967744	rs201316659	CTT	C	419.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.09;ReadPosRankSum=-0.386;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr8	71012811	rs1106334	A	G	8567.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr8	71071695	rs2272670	C	T	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	71075113	rs72663933	T	C	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.27;SOR=1.695;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	71082718	rs2958370	A	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	71086893	rs72663937	T	C	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	71129120	rs71558586	A	AAC	1153.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	71486568	rs268566	G	C	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:32,88:0.73:120
chr8	71506634	rs3816745	G	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.953;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=1.182;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr8	71510093	rs268626	A	G	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	71512349	rs268592	A	T	3942.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:47,171:0.78:218
chr8	71550058	rs268571	G	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	71550144	rs35571096	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.051;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr8	71550832	rs7830986	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr8	71550895	rs11399242	C	CT	553.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr8	71556239	rs28696864	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr8	71573259	rs35863913	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr8	71574251	rs17760050	A	T	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr8	71593425	rs6991329	G	A	3435.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:43,150:0.78:193
chr8	71593663	rs71560435	CTTA	C	353.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr8	72137261	rs13262002	G	C	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr8	72181862	rs2053664	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,17:0.26:66
chr8	72211834	rs3779747	A	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr8	72246342	.	G	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.267;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:214,55:0.20:269
chr8	72246578	rs7840881	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr8	72754980	rs375892944	T	C	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.934;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:150,53:0.26:203
chr8	72755040	rs7812453	A	C	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:56,129:0.70:185
chr8	72755647	rs35471181	C	CT	5743.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:64,178:0.74:242
chr8	72914433	rs35305136	CT	C	744.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=1.076;SOR=0.523;set=HC	GT:AD:AF:DP	1/1:7,48:0.87:55
chr8	72914638	rs12544348	G	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=1.157;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:143,35:0.20:178
chr8	72932259	rs66527710	C	T	6627.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:110,280:0.72:390
chr8	72938332	rs2305017	G	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:34,87:0.72:121
chr8	72938359	rs2305019	T	C	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr8	72942210	rs3824151	G	T	8997.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:134,401:0.75:535
chr8	72952123	rs3214737	G	GT	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr8	72952145	rs2044271	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr8	72958691	rs11349767	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.610;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr8	72958867	rs181920534	A	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.999;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr8	72959535	rs13255063	T	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr8	72962985	rs2120474	G	A	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-1.658;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr8	72963258	rs1025928	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr8	72963296	rs1025929	A	G	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.39;ReadPosRankSum=0.250;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr8	72966002	rs3735943	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:26,73:0.74:99
chr8	72966124	rs3735944	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr8	72971570	rs9298198	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr8	72975619	rs34929058	GA	G	760.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr8	72975801	rs7819749	T	G	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:24,83:0.78:107
chr8	72981221	rs16937970	G	A	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:31,89:0.74:120
chr8	72981327	rs1811457	A	G	4806.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:66,205:0.76:271
chr8	72981499	rs10091093	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:37,57:0.61:94
chr8	72984041	rs16937976	C	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr8	72987638	rs13268757	G	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr8	73117447	rs11783602	T	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:96,42:0.30:138
chr8	73117525	rs1842716	T	G	6287.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:142,292:0.67:434
chr8	73142278	rs276658	T	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=0.906;QD=4.09;ReadPosRankSum=1.509;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:79,30:0.28:109
chr8	73142382	rs12541758	C	T	3968.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:57,165:0.74:222
chr8	73146170	rs375770708	A	AT	1493.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	73150491	rs6989765	G	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:99,43:0.30:142
chr8	73150781	rs17751056	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-1.223;SOR=1.187;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr8	73152837	rs4559286	A	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr8	73156976	rs2017235	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	73921534	rs113373855	G	GGAGGTCGGGAGA	3223.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	73926236	rs2975841	T	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.557;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr8	73942712	rs34742076	C	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr8	73979824	.	C	CTATATATATATATATA	1709	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=15;MQ=60.04;NF=0;NR=14;PP=1709;QD=122.642857143;SC=CCCGTCTCTACTATATATATA;SbPval=1.0;Source=Platypus;TC=50;TCF=0;TCR=50;TR=14;WE=73979832;WS=73979814;set=Platypus	GT:AD:AF:DP	0/1:36,14:0.28:50
chr8	73982161	rs2291219	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:95,55:0.37:150
chr8	73983988	rs5892392	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.759;QD=1.50;ReadPosRankSum=0.177;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:123,38:0.24:161
chr8	73993200	rs10087744	T	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:99,46:0.32:145
chr8	74005131	rs59331088	A	G	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.007;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:266,93:0.26:359
chr8	74153582	rs35071098	T	TTTC	1487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.34;ReadPosRankSum=-0.551;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,36:0.78:46
chr8	74169087	rs111494397	TA	T,TAA	353.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.000;QD=6.80;ReadPosRankSum=0.118;SOR=0.542;set=HC	GT:AD:AF:DP	1/2:10,19,23:0.37,0.44:52
chr8	74169337	rs2546217	T	C	7116.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:100,304:0.75:404
chr8	74203576	rs4394387	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,50:0.75:67
chr8	74204653	rs2070764	A	T	3519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=0.701;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:76,160:0.68:236
chr8	74205731	rs111657422	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=2.379;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr8	74231476	rs34875062	T	TGG	5661.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:63,142:0.69:205
chr8	74233349	rs3830704	T	TA	4258.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:42,130:0.76:172
chr8	74332207	rs6998213	A	G	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	74440125	rs143916422	T	TCAGGAAAATTCAAATAATTTA	10605.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	74463089	rs3088139	T	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	74463724	rs79320778	TTTAA	T	2977.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	74463797	rs10112019	T	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	74473876	rs28418483	G	A	11025.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr8	74527996	rs949493	C	T	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	74581290	rs11419133	A	AG	18226.73	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr8	74717707	rs12680411	C	A	74.03	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	74744721	rs7842946	T	C	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	74859123	rs55903314	T	G	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	74867927	rs72661848	C	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	74868374	rs72661849	G	A	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	74888494	rs2306486	C	T	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	74890961	rs62509309	A	G	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	74893880	rs7108	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	74917084	rs6472812	A	G	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr8	74917228	rs11466001	A	G	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	74939175	.	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.361;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr8	75262798	rs7828201	G	C	8098.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr8	75262841	rs4321999	G	A	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr8	75274141	rs11554166	T	G	7441.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.93;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr8	75275312	rs4463412	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	75614617	rs2162147	A	G	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.558;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:122,43:0.26:165
chr8	75618116	rs34916429	CT	C	356.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr8	75664516	rs34347449	CA	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.510;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr8	75664694	rs34841297	CA	C	2640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.248;QD=5.59;ReadPosRankSum=0.372;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:367,105:0.22:472
chr8	75737770	.	CT	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.067;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr8	76452313	rs2943549	G	A	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:55,112:0.67:167
chr8	76452421	rs2943551	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr8	76459726	rs1800922	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr8	76463571	rs2272668	T	C	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:23,98:0.81:121
chr8	76465522	rs1800924	T	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr8	76468139	rs2941468	C	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.68;ReadPosRankSum=-1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	76468282	rs1805098	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr8	76468309	rs61003427	GTT	G	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr8	76472485	rs2941472	G	A	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:30,74:0.71:104
chr8	76472560	rs2941473	A	T	4141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=0.989;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:82,179:0.69:261
chr8	76476396	rs1805100	G	A	4300.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:58,173:0.75:231
chr8	76476457	rs2272669	G	A	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,66:0.67:98
chr8	77690380	rs12679822	C	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr8	77690563	rs16939357	T	C	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,113:0.70:162
chr8	77694336	.	ATTTTTTT	A	1222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.378;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.559;QD=17.98;ReadPosRankSum=0.659;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:29,39:0.57:68
chr8	77745635	rs2733733	G	A	7718.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr8	77762439	rs16939378	T	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:132,57:0.30:189
chr8	77765298	.	ACCT	A	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-0.762;SOR=0.205;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr8	77765398	rs16919452	A	G	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.897;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:120,33:0.22:153
chr8	77768390	rs16939380	T	G	2452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.176;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:402,150:0.27:552
chr8	77776848	rs3830275	TA	T	512.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.36;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	77879257	rs7000529	T	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	77895865	rs10087163	A	G	13427.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr8	77911986	rs137919839	CTG	C	989.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.564;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.762;QD=7.28;ReadPosRankSum=0.233;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:97,39:0.29:136
chr8	79073301	rs62510328	A	G	7213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-1.255;QD=16.36;ReadPosRankSum=0.396;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:107,334:0.76:441
chr8	79591017	rs28429528	G	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	79598666	rs142222654	GTTTA	G	5940.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,228:0.99:230
chr8	79601420	rs1872072	T	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	79609917	rs370060109	CT	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.956;QD=6.40;ReadPosRankSum=-0.207;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr8	79610710	rs1054283	A	G	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr8	79629738	rs5892663	C	CA	1294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.726;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.770;QD=12.95;ReadPosRankSum=-0.105;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:21,79:0.79:100
chr8	79659182	rs16906062	T	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=0.920;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:67,39:0.37:106
chr8	79659214	.	TCA	T	4111.73	.	AC=1;AF=0.500;AN=2;DP=159;set=Intersection	GT:AD:AF:DP	0/1:51,103:0.67:154
chr8	80523667	rs35479042	G	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr8	80553512	rs13269060	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.217;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-2.084;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr8	80575745	rs13263753	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	80575954	rs13266097	T	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	80576923	rs375568053	C	CCTCT	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	80576942	rs34059899	T	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	80577224	rs71756967	T	TA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.478;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr8	80678427	rs2440624	T	C	1863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.471;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:411,127:0.24:538
chr8	80831393	rs201430403	TA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=-1.481;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr8	80965039	rs3824267	T	A	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	80965070	rs3780010	C	A	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.39;SOR=2.537;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	80965739	rs2303446	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	80976814	rs35099105	C	A	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.676;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=3.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.315;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:166,51:0.24:217
chr8	81032301	rs4740118	A	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	81083598	rs201086010	AAAGCCCGAGTCC	A	12046.73	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr8	81399587	.	GC	TT	1089.77	.	AC=1;AF=0.500;AN=2;DP=113;JOINED;set=Intersection	GT:AD:AF:DP	0/1:80,33:0.29:113
chr8	81426293	rs147305104	T	TA	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,10:0.23:43
chr8	81892766	rs2241972	G	A	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.272;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:289,90:0.24:379
chr8	81897200	rs7006101	C	T	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.088;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:521,144:0.22:665
chr8	81905314	rs2016459	A	C	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.191;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:289,92:0.24:381
chr8	81905397	rs2016465	A	G	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.531;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:289,77:0.21:366
chr8	81905533	rs895267	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr8	82192796	.	A	C	1814.77	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:27,74:0.73:101
chr8	82373616	rs62513549	G	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,37:0.37:99
chr8	82588492	rs204781	T	C	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.303;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=0.816;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,43:0.59:73
chr8	82590822	rs2932222	C	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr8	82590861	rs2991004	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr8	82606782	rs2955006	A	G	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:43,123:0.74:166
chr8	82627395	rs58900840	A	C	1133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.650;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=3.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-1.807;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:166,62:0.27:228
chr8	82629447	rs62512330	G	A	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-2.000;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:91,31:0.25:122
chr8	82633452	rs2130263	C	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-1.804;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr8	82713930	rs61516400	A	AGAGT	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr8	82727515	rs2635482	C	T	2169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.444;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=1.673;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:179,64:0.26:243
chr8	82727520	rs2600606	A	T	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=1.380;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:184,67:0.27:251
chr8	82727569	rs16909651	T	C	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.768;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:304,96:0.24:400
chr8	82741576	rs34550849	C	CA	920.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	82751822	rs1814534	T	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr8	82752291	rs12056632	A	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:124,51:0.29:175
chr8	85686975	rs2718970	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=2.602;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr8	85716963	rs11784597	C	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	85785413	rs3780004	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr8	85785428	.	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr8	85833034	rs28592585	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.25;ReadPosRankSum=-0.792;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	85833168	rs13267859	A	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr8	86021994	rs62525422	G	A	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:73,103:0.59:176
chr8	86048000	rs36102162	AT	A	1091.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=8.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=1.286;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:27,65:0.71:92
chr8	86057707	rs62525428	A	G	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:27,71:0.72:98
chr8	86089787	rs12926	C	G	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.060;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr8	86114525	rs3217409	T	TTTA	654.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr8	86121311	rs3808538	G	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr8	86126827	rs112611553	C	CAACATT	4825.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	86134784	rs12550160	C	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr8	86134974	rs1553014	T	C	5222.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:90,230:0.72:320
chr8	86135096	rs2132589	A	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:23,62:0.73:85
chr8	86135132	rs1021583	A	G	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr8	86158217	rs34150174	TTAAAC	T	2434.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:33,62:0.65:95
chr8	86158249	rs17740658	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr8	86161990	rs62527224	A	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,50:0.83:60
chr8	86163230	.	CTT	C	912.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.059;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:40,46:0.53:86
chr8	86163287	rs111772479	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr8	86171786	rs4739698	T	C	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:33,82:0.71:115
chr8	86171816	rs4739699	A	G	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	86180906	rs10712447	CT	C	606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.726;QD=7.88;ReadPosRankSum=-0.939;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:25,52:0.68:77
chr8	86180944	rs2006767	A	G	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,43:0.74:58
chr8	86250709	rs4740049	T	C	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr8	86253707	rs142346369	T	TA	1099.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	86351997	rs20571	G	A	2634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.57;ReadPosRankSum=-0.526;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:34,116:0.77:150
chr8	86360458	rs11340759	TC	T	1351.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr8	86376442	.	G	A	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.964;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-2.414;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:209,86:0.29:295
chr8	86388228	rs2307075	A	C	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr8	86389195	rs11780942	C	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr8	86389403	rs703	T	C	5517.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:86,242:0.74:328
chr8	87060672	rs3802225	A	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.170;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr8	87076150	rs981711	C	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	87076520	rs6998760	C	A	1273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=4.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.210;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:231,75:0.25:306
chr8	87111368	.	GA	G	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.852;QD=1.14;ReadPosRankSum=0.843;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:144,41:0.22:185
chr8	87126151	rs17602780	G	A	4485.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:59,194:0.77:253
chr8	87126178	rs17660682	G	C	3609.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:36,141:0.80:177
chr8	87151606	rs2466326	G	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	87155037	rs17603897	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr8	87155094	rs1483779	T	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	87155225	rs75594898	C	T	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr8	87155274	rs11317974	AT	A	140.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr8	87226634	rs56993779	TCCGACATC	T	933.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=1.853;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:124,32:0.21:156
chr8	87226963	rs76235312	C	G	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:18,67:0.79:85
chr8	87229702	rs4546639	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr8	87229739	rs4419794	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr8	87235150	rs2976190	C	T	6818.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr8	87235273	rs2976189	C	T	5755.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:105,245:0.70:350
chr8	87241715	rs2954347	A	G	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr8	87241797	rs11413051	A	AT	526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=8.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.681;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:211,53:0.20:264
chr8	87241847	rs7814198	G	A	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.951;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:326,97:0.23:423
chr8	87393168	rs117873857	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr8	87440101	.	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.059;QD=0.64;ReadPosRankSum=-0.544;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:110,29:0.21:139
chr8	87443026	.	CCATATATATATATA	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr8	87452766	rs4961191	A	G	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	87453030	rs10092164	A	G	467.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.47;ReadPosRankSum=0.000;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr8	87455070	rs71275852	TA	T	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.471;SOR=2.694;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr8	87480730	rs72690412	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,62:0.73:85
chr8	87480731	rs73273140	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr8	87482324	rs6471352	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr8	87484582	rs73273151	G	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.079;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:93,31:0.25:124
chr8	87484640	rs72690413	T	C	4173.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:67,183:0.73:250
chr8	87519315	rs6980476	T	G	4209.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:79,188:0.70:267
chr8	87540872	rs10956871	G	A	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,70:0.64:110
chr8	87543280	rs72690455	C	T	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:25,76:0.75:101
chr8	87544832	rs72690457	A	G	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.55;ReadPosRankSum=0.844;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:19,72:0.79:91
chr8	87552426	rs16915389	T	C	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=0.174;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:23,47:0.67:70
chr8	87557153	rs17609515	C	T	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr8	87567031	rs2304790	G	A	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	87567305	rs3816240	A	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	87568644	rs2304787	T	G	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr8	87570665	rs1062850	A	C	16230.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr8	87570728	rs1062851	C	T	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	87581682	rs10660354	T	TCA	3046.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	87581710	rs148839267	CCA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-0.528;QD=1.20;ReadPosRankSum=-2.294;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr8	87588519	rs974279	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	87591575	rs141759396	T	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr8	87644924	rs67463707	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr8	87645159	rs3735969	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.278;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr8	87660100	rs13265557	T	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:117,49:0.30:166
chr8	87666251	rs4961206	T	G	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:55,135:0.71:190
chr8	87679098	rs3735967	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr8	87679303	rs6471482	A	C	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	87679463	rs3735966	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr8	87680112	rs7815125	T	A	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	87680406	.	GA	G	765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.247;QD=5.24;ReadPosRankSum=0.576;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:88,58:0.40:146
chr8	87683465	rs1441242	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	87899871	rs66493340	T	G	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	87899960	rs67958512	A	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	87917236	rs10504828	T	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	87951714	rs4644279	A	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	88440715	.	C	CTATCTTTT	1754	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=6;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=13;NR=7;PP=1754;QD=89.25;SC=AGCAATTGCTCTTTTTATGAA;SbPval=0.42;Source=Platypus;TC=23;TCF=16;TCR=7;TR=20;WE=88440725;WS=88440705;set=Platypus	GT:AD:AF:DP	1/1:3,20:0.87:23
chr8	88440716	.	T	TA	2188.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.72;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	88440717	.	T	A	586	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=4;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=26;NR=7;PP=586;QD=18.8112488651;SC=CAATTGCTCTTTTTATGAAGA;SbPval=0.78;Source=Platypus;TC=45;TCF=33;TCR=12;TR=33;WE=88440725;WS=88440705;set=Platypus	GT:AD:AF:DP	1/1:12,33:0.73:45
chr8	88440717	.	T	TCTTTTTA	2188.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.72;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	88622043	rs9694259	T	G	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	89198831	rs144312592	CAA	C	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.83;ReadPosRankSum=-0.738;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr8	89340034	rs72340679	GAC	G	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=6.272;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.619;QD=0.55;ReadPosRankSum=-0.706;SOR=0.224;set=HC	GT:AD:AF:DP	0/1:122,16:0.12:138
chr8	90770609	rs39499	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr8	90777510	rs431264	G	A	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:33,101:0.75:134
chr8	90781953	rs40377	C	T	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:20,67:0.77:87
chr8	90792127	rs39506	A	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr8	90796369	rs71268283	TAAA	T	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.540;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=2.902;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr8	91094086	rs7815279	A	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	91094983	rs3087750	G	A	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	91992746	rs2740774	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	92021036	rs2054805	C	T	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	92082753	rs3808378	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	92083230	rs28429767	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	92083424	rs11557571	A	G	11508.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr8	92083592	rs5893159	CT	C	245.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-2.203;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:4,19:0.83:23
chr8	92090573	rs11786324	G	C	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	92130316	rs55762572	A	G	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	92136728	rs11785003	C	T	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	92139254	rs12544236	T	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	92145322	.	G	GT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.003;QD=6.30;ReadPosRankSum=0.464;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr8	92301249	rs4734009	G	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr8	92307978	rs10107822	C	T	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr8	92352887	rs7012287	C	T	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	92364100	rs10109254	T	C	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.400;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:276,94:0.25:370
chr8	92406021	rs16912805	C	T	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.875;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:246,74:0.23:320
chr8	92406436	rs139042959	CT	C	1235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.550;QD=2.73;ReadPosRankSum=0.004;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:346,107:0.24:453
chr8	92407446	rs10504905	C	T	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=5.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.470;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:178,67:0.27:245
chr8	92407524	rs9297895	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr8	92972780	rs2977676	G	A	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.634;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:182,59:0.24:241
chr8	93088151	rs13252280	C	T	4610.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:56,183:0.77:239
chr8	93328787	.	GAGAAGTAGAAGTAGAAGTAGAAGGAGAAGGAGAAGGAGAAGGAGA	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.32;MQRankSum=-0.000;QD=7.34;ReadPosRankSum=1.645;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr8	93328993	rs138085384	CGAA	C	1292.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=43.09;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	93904087	rs3780016	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	94359032	rs12677732	A	G	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:48,113:0.70:161
chr8	94715965	rs6997642	C	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	94721974	rs141977697	C	T	1964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.37;ReadPosRankSum=0.776;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,86:0.72:120
chr8	94740320	rs77899597	CA	C	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr8	94746698	rs3133974	G	T	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.279;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:244,83:0.25:327
chr8	94800261	.	C	CT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=4.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.844;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr8	94808165	rs3134031	A	G	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.501;QD=2.34;ReadPosRankSum=-0.981;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:346,89:0.20:435
chr8	94822199	.	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-2.719;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr8	94928208	rs4236818	A	C	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=4.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.748;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:173,48:0.22:221
chr8	94935937	rs4735258	T	C	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.942;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.196;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr8	95143172	rs1051624	T	G	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:33,136:0.80:169
chr8	95143186	rs1051623	C	G	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr8	95158259	rs2251734	G	A	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.462;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:201,60:0.23:261
chr8	95158382	rs1131830	C	T	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:42,110:0.72:152
chr8	95160949	rs151133817	GT	G	2956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=4.324;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.618;QD=22.40;ReadPosRankSum=2.149;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:45,87:0.66:132
chr8	95160958	rs76453018	T	G	1637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=10.248;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.684;QD=11.45;ReadPosRankSum=1.679;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:67,76:0.53:143
chr8	95161102	rs35792427	G	A	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.931;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:333,87:0.21:420
chr8	95172403	rs11786634	T	C	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	95172487	rs11785909	A	T	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	95174286	rs78214329	GA	G	1706.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	95174535	rs56347019	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	95174570	rs56034198	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	95182801	rs72670354	G	T	13191.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr8	95186295	rs2514813	T	C	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	95186382	rs3214050	G	A	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	95186510	rs34016273	GA	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.543;QD=1.47;ReadPosRankSum=1.754;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr8	95188850	rs2243518	T	C	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	95206799	rs56129387	G	T	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	95479879	rs3099398	A	G	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=3.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.777;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:209,71:0.25:280
chr8	95504224	rs3098725	G	A	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	95507237	rs112365062	A	AT	1716.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:31,111:0.78:142
chr8	95508499	rs3099408	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.840;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr8	95508721	rs2289455	C	T	10730.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:204,477:0.70:681
chr8	95511785	rs56372696	T	C	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr8	95518960	rs113892534	G	GA	1384.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:41,72:0.64:113
chr8	95521853	rs147073742	TACACACAC	T,TACACACACAC	7346.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=234;set=Intersection	GT:AF:DP	1/2:0.84,0.13:201
chr8	95523335	rs3102858	T	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,31:0.31:101
chr8	95524126	rs35725183	TTAAA	T	2381.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	95524209	rs3099412	C	T	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	95530000	rs12375388	A	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr8	95531419	rs1866844	T	C	16287.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr8	95538468	rs2890827	T	C	7161.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:1,263:1.00:264
chr8	95541371	rs957446	T	A	15602.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr8	95541663	rs3098719	T	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	95547005	rs59429647	AT	A	696.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=15.569;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=4.84;ReadPosRankSum=1.640;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:87,57:0.40:144
chr8	95547037	rs3102863	C	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.401;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:180,51:0.22:231
chr8	95549280	rs3098723	G	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.072;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:79,25:0.24:104
chr8	95549547	rs2304765	A	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	95550357	rs1866845	A	T	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	95550474	rs1866846	T	C	5981.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:85,262:0.76:347
chr8	95559092	rs3133651	T	C	25299.77	.	AC=2;AF=1.00;AN=2;DB;DP=925;set=Intersection	GT:AD:AF:DP	1/1:0,915:1.00:915
chr8	95565538	rs3133658	G	C	6944.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	95565762	rs3133659	A	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	95651239	rs7824334	T	G	11864.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr8	95651590	rs5893292	C	CT	10799.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr8	95651599	rs2162237	A	C	10379.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	95655415	rs2303451	T	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr8	95658287	rs149099719	A	AT	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	95658526	rs60139063	T	C	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	95658562	rs57602858	A	AAAAT	3483.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	95673674	rs6471455	A	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr8	95673945	rs7820441	A	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	95674823	rs11404889	G	GT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.271;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr8	95676785	rs17717009	G	A	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:17,78:0.82:95
chr8	95676894	rs17644352	C	G	8921.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:117,378:0.76:495
chr8	95677132	rs1426171	T	C	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	95680229	rs1549466	C	T	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.175;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:215,80:0.27:295
chr8	95686850	rs17717431	A	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr8	95690579	rs12677519	T	C	8637.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr8	95718131	rs61112381	CTTTT	C	959.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=20.86;ReadPosRankSum=-0.427;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr8	95718314	rs11785	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr8	95732283	rs13267007	G	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=0.405;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:13,38:0.75:51
chr8	95738717	rs7816645	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr8	95746833	rs7815731	C	G	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr8	95750546	rs201512830	CA	C	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=1.005;SOR=1.687;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr8	95773886	rs138678169	TAA	T	226.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr8	95793284	rs36116205	A	AT	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.817;QD=7.37;ReadPosRankSum=0.042;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:28,36:0.56:64
chr8	95793515	rs4398879	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	95796177	rs4236830	T	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	95800325	rs4428644	T	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.91;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	95853708	rs11996455	G	A	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	95853907	rs13271375	A	G	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	95853948	rs13271644	A	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	95877787	rs713113	T	C	13165.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:4,487:0.99:491
chr8	95886551	rs10956928	A	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.54;SOR=4.590;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	95888307	rs1129152	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.634;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr8	95894255	rs28399584	T	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr8	95902819	rs139407777	ATT	A	1577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=5.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=1.181;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:49,92:0.65:141
chr8	95906554	rs2466431	C	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	95951807	rs2013597	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	95951916	rs5893310	GTGAC	G	3202.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	95952477	rs2956210	A	G	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	96046094	rs2678823	G	A	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	96047806	rs34960210	T	TA	1150.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:28,68:0.71:96
chr8	96053782	rs79118993	GCT	G	2260.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	96054000	rs7818382	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	96069973	rs33972988	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=1.347;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr8	96070181	rs2678832	T	C	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	96085317	rs4641029	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr8	96281480	rs142455613	A	AGGGGACCTGGC	4493.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr8	97172403	rs2466129	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr8	97243720	rs2292835	G	A	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.403;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:273,75:0.22:348
chr8	97243789	rs77407648	G	C	6113.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:76,247:0.76:323
chr8	97246978	rs2643339	C	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.601;QD=2.02;ReadPosRankSum=-2.527;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr8	97256341	rs6993518	T	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr8	97257982	rs871798	T	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:74,34:0.31:108
chr8	97258719	rs1878638	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr8	97269324	rs75477527	G	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:144,55:0.28:199
chr8	97270991	rs2319603	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:67,28:0.29:95
chr8	97321898	rs961075	T	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.129;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:82,17:0.17:99
chr8	97332661	rs3735987	A	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=2.006;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:113,34:0.23:147
chr8	97342536	rs2280263	A	G	8486.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	97343176	rs2271775	G	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	97345590	rs3735986	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	97384408	rs2244423	C	T	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:151,71:0.32:222
chr8	97384625	rs34027129	A	AG	178.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr8	97398001	rs11994616	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr8	97398106	rs369856367	TTC	T,TTCTCTC	9354.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.904;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.70;ReadPosRankSum=0.383;SOR=0.847;set=HC	GT:AD:AF:DP	1/2:21,115,179:0.37,0.57:315
chr8	97506373	rs880938	C	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr8	97847358	rs1864384	G	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr8	98289714	rs2635164	G	C	13933.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:214,575:0.73:789
chr8	98289986	rs28669903	C	T	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.109;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:264,88:0.25:352
chr8	98817432	rs4735496	C	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr8	98817559	rs112813626	T	TG	813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.447;QD=17.69;ReadPosRankSum=-0.563;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:18,28:0.61:46
chr8	98827531	rs7818775	G	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.170;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr8	98828215	rs3073521	A	ACTT	1420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=8.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-0.420;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:105,42:0.29:147
chr8	98828529	rs2331656	A	G	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-1.300;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr8	98828532	rs2331657	C	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.602;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-1.927;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr8	98828551	rs2331658	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.913;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr8	98831577	rs62524114	G	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.020;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chr8	98943446	rs2290470	T	C	12695.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr8	98943598	rs2290472	C	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:220,98:0.31:318
chr8	98954012	rs2513845	T	C	7849.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr8	98954272	rs3018906	T	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:110,44:0.29:154
chr8	98991221	rs1869609	A	G	6216.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:124,273:0.69:397
chr8	98991223	rs1869608	A	G	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:262,118:0.31:380
chr8	99016092	rs10955143	A	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	99019930	rs11775531	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	99030280	rs2248014	T	C	7203.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr8	99033328	rs6987112	A	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	99057415	rs74971161	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:111,46:0.29:157
chr8	99057526	rs812	G	A	9862.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr8	99101923	rs146230859	A	C	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.049;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:215,73:0.25:288
chr8	99115144	rs2447497	A	G	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=3.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.303;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:182,72:0.28:254
chr8	99118622	rs2242197	A	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr8	99118654	rs2242196	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	99120794	rs77539382	T	TC	1472.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chr8	99121035	rs34451943	GC	G	8342.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=44.38;SOR=1.272;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	99121036	.	CTA	TAG	2937	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=1;HapScore=1;MGOF=8;MMLQ=22;MQ=60.16;NF=60;NR=102;PP=2937;QD=20;SC=AAATTCAATGCTAGAAGACTT;SbPval=0.51;Source=Platypus;TC=172;TCF=63;TCR=109;TR=162;WE=99121046;WS=99121026;set=Platypus	GT:AD:AF:DP	1/1:10,162:0.94:172
chr8	99121038	rs34397714	A	AG	8342.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=45.34;SOR=1.321;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr8	99121075	rs35654897	TAA	T,TA	1774.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=0.282;QD=23.66;ReadPosRankSum=-0.495;SOR=0.883;set=HC	GT:AD:AF:DP	1/2:1,57,17:0.76,0.23:75
chr8	99140544	rs2447508	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	99152126	rs28695425	G	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=45.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	99152130	rs28668499	G	T	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=43.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	99152170	rs28549107	C	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	99152183	rs28645170	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	99152269	rs111460631	AT	A	7638.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	99153088	rs17184326	A	C	7838.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:120,350:0.74:470
chr8	99153126	rs28575522	C	T	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-2.349;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:298,98:0.25:396
chr8	99153160	rs17184361	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-1.300;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:198,42:0.17:240
chr8	99158778	rs17184704	A	G	9145.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr8	99160957	rs9969536	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	99161327	rs72680615	C	T	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	99162634	rs7000738	T	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	99162888	rs4735530	A	G	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	99205111	rs3735885	T	C	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=4.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.529;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:109,33:0.23:142
chr8	99205612	rs3735887	C	T	2148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.796;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:339,135:0.28:474
chr8	99208065	rs13264255	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr8	99208190	rs3779721	A	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.245;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr8	99208244	rs7010905	G	T	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr8	99960658	rs117874610	C	T	6271.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:121,250:0.67:371
chr8	100133706	rs7460625	T	G	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	100287517	rs11332378	CT	C	577.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=2.673;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:23,60:0.72:83
chr8	100287563	.	AT	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=4.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.279;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr8	100287579	rs7840337	G	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	100493820	rs35543295	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr8	100871751	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.837;QD=0.77;ReadPosRankSum=-0.624;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:89,24:0.21:113
chr8	100904061	rs78095945	G	A	4176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=1.374;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:61,173:0.74:234
chr8	100975002	rs6468700	A	G	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr8	100999575	rs12545059	A	T	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	101117554	rs1471294	T	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr8	101117734	rs1471293	A	G	12306.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr8	101137897	rs2453626	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	101138096	rs1460933	T	C	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	101149939	rs2453629	G	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.022;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:91,22:0.19:113
chr8	101153024	rs1460934	G	A	14562.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr8	101157227	rs2514689	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,29:0.30:96
chr8	101157396	rs76557796	T	C	4144.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:43,176:0.80:219
chr8	101163658	rs3752833	T	C	4383.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:56,178:0.76:234
chr8	101174426	rs16898015	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr8	101196824	rs2453656	G	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.786;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:91,28:0.24:119
chr8	101203737	rs3802149	T	C	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:24,103:0.81:127
chr8	101206391	rs17335870	G	A	2281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.659;QD=16.30;ReadPosRankSum=-0.656;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:41,99:0.71:140
chr8	101206459	rs56246127	A	AGAC	4200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.697;QD=27.28;ReadPosRankSum=1.581;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:49,105:0.68:154
chr8	101206531	rs17335911	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr8	101225241	rs11280812	C	CCCGCGGCCT	2665.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	101225259	.	T	TCCGCGGCCG	2982	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=4;HapScore=1;MGOF=13;MMLQ=24;MQ=60.0;NF=11;NR=14;PP=2982;QD=20;SC=CTCCGCGGCCTCCGCGGCAAC;SbPval=0.6;Source=Platypus;TC=69;TCF=31;TCR=38;TR=25;WE=101225267;WS=101225249;set=Platypus	GT:AD:AF:DP	0/1:44,25:0.36:69
chr8	101225298	rs3098659	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.688;QD=1.96;ReadPosRankSum=0.258;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:153,37:0.19:190
chr8	101225559	rs2514681	C	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.660;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.712;QD=5.88;ReadPosRankSum=0.973;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:69,37:0.35:106
chr8	101225838	rs2514682	C	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	101225894	rs62532740	G	A	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.98;ReadPosRankSum=-0.234;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:15,48:0.76:63
chr8	101232421	rs141450399	TCAGTACTG	T	1856.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr8	101232701	rs2919471	T	C	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	101252680	rs6511	T	C	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	101253184	rs1788190	G	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:167,75:0.31:242
chr8	101281238	rs7014862	C	A	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr8	101523031	rs80198067	C	T	622.88	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr8	101540153	rs11555216	A	G	7494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.654;QD=15.23;ReadPosRankSum=-0.521;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:146,346:0.70:492
chr8	101540233	.	TA	T	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.927;QD=5.70;ReadPosRankSum=1.447;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:29,41:0.59:70
chr8	101542205	rs2469652	G	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr8	101586133	rs2022923	T	C	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:41,116:0.74:157
chr8	101596486	rs950648	C	T	6514.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:125,276:0.69:401
chr8	101612741	rs62513873	G	A	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:27,72:0.73:99
chr8	101620541	rs2469668	T	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	101718965	rs62513921	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=6.212;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-6.837;QD=0.41;ReadPosRankSum=3.208;SOR=1.762;set=HC	GT:AD:AF:DP	0/1:173,15:0.08:188
chr8	101718968	rs62513922	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=8.066;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-6.876;QD=0.38;ReadPosRankSum=3.222;SOR=1.777;set=HC	GT:AD:AF:DP	0/1:175,15:0.08:190
chr8	101721705	rs201017624	G	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=6.707;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-19.590;QD=1.12;ReadPosRankSum=-8.688;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:480,51:0.10:531
chr8	101721709	rs146200489	T	A	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=8.323;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-19.237;QD=1.22;ReadPosRankSum=-8.094;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:491,54:0.10:545
chr8	101721727	rs139094790	G	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.317;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=6.992;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-17.962;QD=0.35;ReadPosRankSum=-4.509;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:555,83:0.13:638
chr8	101721756	rs57799615	A	C	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.028;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=7.130;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-19.008;QD=1.46;ReadPosRankSum=1.039;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:563,119:0.17:682
chr8	101721812	rs200409148	G	A	4188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.757;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-12.754;QD=6.77;ReadPosRankSum=1.976;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:481,138:0.22:619
chr8	101721817	rs201076736	T	C	4121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.517;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-11.725;QD=6.72;ReadPosRankSum=1.226;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:478,135:0.22:613
chr8	101721839	rs202074479	C	A	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-9.587;QD=1.94;ReadPosRankSum=-0.160;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:440,101:0.19:541
chr8	101936283	rs41507849	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:92,34:0.27:126
chr8	101937370	rs964919	A	T	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.51;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	101937370	.	AAACA	TAACA,TAACG	275	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=22;MQ=60.0;NF=11,4;NR=15,4;PP=275,13;QD=11.9142774057;SC=TATAAAACTTAAACACCCAGT;SbPval=0.56;Source=Platypus;TC=26;TCF=11;TCR=15;TR=26,8;WE=101937382;WS=101937360;set=Platypus	GT:AF:DP	0/1:1.00:26
chr8	101937374	rs3105460	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.815;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr8	102504974	rs515622	C	G	8238.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr8	102585806	rs548564	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr8	102676566	rs3029400	T	TGAA	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=1.356;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr8	102678798	rs10093032	C	T	1777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.217;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:435,129:0.23:564
chr8	102678972	rs3735713	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr8	102701456	rs375965103	CA	C	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=3.349;QD=1.91;ReadPosRankSum=-0.939;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:153,61:0.29:214
chr8	103137663	rs12549434	T	C	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=1.780;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:92,39:0.30:131
chr8	103137693	rs487571	T	C	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=1.514;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:64,36:0.36:100
chr8	103220351	rs1265117	A	G	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	103225223	rs29000274	A	C	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,46:0.81:57
chr8	103230953	rs11432874	C	CA	142.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.804;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr8	103238260	rs28999710	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.591;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:163,50:0.23:213
chr8	103244557	rs3735722	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr8	103247134	rs2853229	A	C	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=-0.465;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:16,56:0.78:72
chr8	103250775	rs1037700	G	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr8	103250839	rs5893603	C	CG	4261.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:50,131:0.72:181
chr8	103250930	rs1037699	C	T	6784.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:91,292:0.76:383
chr8	103251180	rs28999668	G	GTGGTCCGC	3147.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:54,121:0.69:175
chr8	103287850	rs367962786	TA	T	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.739;QD=1.32;ReadPosRankSum=-0.723;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:160,45:0.22:205
chr8	103305719	rs2293983	G	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr8	103312434	rs3736653	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:18,71:0.80:89
chr8	103372743	rs6468823	G	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	103541166	rs17186084	G	A	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:46,89:0.66:135
chr8	103541712	rs74754613	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=6.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-2.172;SOR=0.125;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr8	103563907	rs3808357	G	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:83,31:0.27:114
chr8	103572551	rs57773710	T	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr8	103572992	rs3018444	C	G	38243.77	.	AC=2;AF=1.00;AN=2;DB;DP=923;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,854:1.00:854
chr8	103572992	.	CTGCAGCCCCTGCAG	GTGCAGCCCCTGCAG,GTGCAGCCCGTGCAA	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=24;MQ=59.99;NF=450,344;NR=385,299;PP=2962,2934;QD=20;SC=CTTGCAGCCCCTGCAGCCCCT;SbPval=0.52;Source=Platypus;TC=838;TCF=452;TCR=386;TR=835,643;WE=103573044;WS=103572982;set=Platypus	GT:AF:DP	0/1:1.00:838
chr8	103573001	rs3018445	C	G	31811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.556;ClippingRankSum=0.000;DB;DP=1188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.98;ReadPosRankSum=-2.534;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:229,798:0.78:1027
chr8	103573006	rs2916569	G	A	31650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.082;ClippingRankSum=0.000;DB;DP=1013;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.43;ReadPosRankSum=-1.043;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:223,784:0.78:1007
chr8	103573010	.	CTGCAACCCCTGCAGCCCCTGCAACCCG	C	4041.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.353;ClippingRankSum=0.000;DP=1161;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=4.823;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:933,169:0.15:1102
chr8	103663912	rs11552577	T	G	9889.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:110,441:0.80:551
chr8	103664698	rs10639139	A	AT	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.868;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr8	103846823	rs71303443	A	AAAC	334.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr8	103851052	rs1062048	T	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.351;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:169,53:0.24:222
chr8	103852064	rs3217408	TA	T	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.513;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr8	103876780	rs2247355	C	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr8	103876928	rs72686929	G	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	104053283	rs1512351	G	T	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:35,112:0.76:147
chr8	104054513	.	G	GT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.975;QD=1.15;ReadPosRankSum=-0.777;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:77,22:0.22:99
chr8	104054526	rs3779908	A	T	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.687;QD=12.31;ReadPosRankSum=0.391;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:31,70:0.69:101
chr8	104076923	rs151079473	AT	A	1669.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr8	104078420	rs71984986	TGTAAAG	T	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=1.322;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr8	104081085	rs9992	G	C	8546.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr8	104166746	rs57787067	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr8	104166902	rs35605502	G	GC	4518.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	104312341	rs3736047	A	G	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.280;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=1.112;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:163,49:0.23:212
chr8	104319947	rs11312808	GT	G	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.020;QD=2.53;ReadPosRankSum=-0.855;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr8	104331088	rs3104026	G	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	104336672	rs827550	G	A	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:38,95:0.71:133
chr8	104337096	rs3808554	A	G	2248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-1.675;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:317,128:0.29:445
chr8	104337367	rs3808553	A	C	2925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.755;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.079;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:495,171:0.26:666
chr8	104340719	rs2270525	T	C	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:31,87:0.74:118
chr8	104343686	rs1053917	G	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.837;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=2.329;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:197,56:0.22:253
chr8	104343822	rs2934725	A	G	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	104388288	rs72124849	TAAAAA	T	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:1,12:0.92:13
chr8	104390224	rs2687364	T	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=4.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=1.601;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:139,42:0.23:181
chr8	104394631	rs3098232	A	G	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:29,87:0.75:116
chr8	104394744	rs3098233	T	C	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=1.418;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:198,63:0.24:261
chr8	104412935	rs2241778	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr8	104420100	rs3134254	T	C	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:29,75:0.72:104
chr8	104426904	rs10709873	CA	C	1947.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.41;ReadPosRankSum=0.155;SOR=0.135;set=HC	GT:AD:AF:DP	0/1:9,46:0.84:55
chr8	104426905	.	AAC	A	2295	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=1;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=24;NR=5;PP=2295;QD=80.8717340426;SC=CGCGGACAGCAACGCTCCCTT;SbPval=0.46;Source=Platypus;TC=39;TCF=33;TCR=6;TR=29;WE=104426918;WS=104426900;set=Platypus	GT:AD:AF:DP	0/1:10,29:0.74:39
chr8	104426907	rs367610017	CG	C	1944.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.96;ReadPosRankSum=-0.348;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:11,48:0.81:59
chr8	104426908	.	GCT	CCC	2521	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=2;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=31;NR=5;PP=2521;QD=20;SC=GGACAGCAACGCTCCCTTCAA;SbPval=0.81;Source=Platypus;TC=62;TCF=50;TCR=12;TR=36;WE=104426918;WS=104426900;set=Platypus	GT:AD:AF:DP	0/1:26,36:0.58:62
chr8	104426910	rs114156661	T	C	1953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.368;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.11;ReadPosRankSum=-0.050;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:11,48:0.81:59
chr8	104427359	rs3134295	A	C	9957.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:167,411:0.71:578
chr8	104427541	rs3134296	C	T	8438.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:150,367:0.71:517
chr8	104427578	rs3134297	T	C	6876.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:114,283:0.71:397
chr8	104432545	rs3134253	A	G	4952.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:68,212:0.76:280
chr8	104442666	rs7816297	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr8	104445009	rs1370005	T	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr8	104452554	rs36073721	A	ATAT	736.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr8	104452621	rs58480092	TAAAA	T	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	104454009	rs59392618	C	CT	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.924;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=7.50;ReadPosRankSum=1.453;SOR=1.623;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr8	104454794	rs3098214	A	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr8	104513343	rs35745796	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr8	104513395	rs36056848	T	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr8	104709594	rs1176674	A	G	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr8	104897391	rs72681354	C	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr8	104922519	rs112118632	C	CT	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.415;QD=2.77;ReadPosRankSum=0.006;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:69,31:0.31:100
chr8	104930646	rs200834695	C	CT	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=1.035;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr8	104933053	rs61400627	TA	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.480;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr8	104934028	rs6468897	G	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.536;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:208,53:0.20:261
chr8	104935082	rs141861149	T	TA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.708;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr8	104940210	rs17817023	T	G	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr8	104987771	rs72683111	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:78,37:0.32:115
chr8	104987823	rs72683112	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr8	105001724	rs17817675	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr8	105053356	rs10086112	A	G	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.609;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.993;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr8	105053383	rs10086223	C	T	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.840;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:114,39:0.25:153
chr8	105080921	rs4366052	A	G	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr8	105261161	rs3072636	A	AT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-0.692;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr8	105261946	rs1447063	C	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr8	105263248	rs1374519	C	T	1359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.501;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:268,95:0.26:363
chr8	105263751	rs2252152	T	A	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	105263979	rs10461	C	T	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:103,187:0.64:290
chr8	105264087	rs34085789	C	CAA	1569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.836;QD=17.84;ReadPosRankSum=1.955;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:13,75:0.85:88
chr8	105361095	rs3088027	C	T	8360.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:150,355:0.70:505
chr8	105361354	rs67114147	G	C	7030.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:135,294:0.69:429
chr8	105367096	rs2458431	T	C	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:21,73:0.78:94
chr8	105367121	rs3802204	A	G	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:37,113:0.75:150
chr8	105393687	rs2253336	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr8	105440462	rs2246815	A	G	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	105459793	rs7821992	C	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	105463690	rs2669429	A	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr8	105479149	rs2959023	A	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.498;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr8	105503818	rs201824078	T	TA	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-0.719;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:16,41:0.72:57
chr8	105601198	.	A	ACGCCGCCGC	3010.73	.	AC=1;AF=0.500;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	0/1:39,95:0.71:134
chr8	105845706	rs145596017	T	TTTTTTTTC	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=1.140;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr8	105845742	rs1380689	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr8	105845812	rs1380688	C	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr8	105907461	rs2290865	G	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	105907786	rs3214884	GT	G	4932.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	106331094	.	G	GGCGGCGGGA	3028.73	.	AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.35;QD=44.54;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	106573578	rs3735953	C	T	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.185;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:137,36:0.21:173
chr8	106628731	rs13281515	A	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.067;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr8	106628892	rs71303450	C	CAAT	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.199;QD=4.49;ReadPosRankSum=0.509;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:85,18:0.17:103
chr8	106628965	rs1817023	T	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chr8	106646683	rs4734883	A	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr8	107277717	rs2938306	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr8	107371924	rs2022982	C	A	5314.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	107531037	rs74689358	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr8	107531095	.	GA	G	525.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr8	107630536	rs3134136	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr8	107670141	rs2282510	G	A	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:21,79:0.79:100
chr8	107695648	rs3102433	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr8	107704940	.	TA	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=3.726;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:113,30:0.21:143
chr8	107719521	rs28921423	T	C	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:14,66:0.82:80
chr8	107751966	rs34123736	GTTAA	G	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr8	107754583	rs1784468	T	G	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr8	107782065	rs13259080	A	G	2379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.232;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:399,147:0.27:546
chr8	107782335	rs11996457	G	A	5798.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:91,257:0.74:348
chr8	107782395	rs11996466	G	A	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr8	108315277	rs4472483	T	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	108335042	rs7009753	C	T	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-1.076;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:34,49:0.59:83
chr8	108359026	rs10156232	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-1.219;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr8	108970264	rs3039298	T	TCA	13024.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr8	108970367	rs601558	A	G	16191.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr8	109009081	rs1369068	T	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,28:0.32:87
chr8	109215368	rs630492	T	C	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.998;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:199,74:0.27:273
chr8	109245991	rs612744	G	A	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr8	109246032	rs587340	C	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.074;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr8	109254262	rs615233	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr8	109254475	rs13279663	C	T	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.138;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:479,145:0.23:624
chr8	109254677	rs627392	C	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:120,47:0.28:167
chr8	109260776	rs4735053	A	G	4793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=1331;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.587;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:991,332:0.25:1323
chr8	109462215	.	CT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.189;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr8	109462791	rs4540386	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,16:0.25:63
chr8	109465432	.	AT	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.904;QD=0.41;ReadPosRankSum=-1.517;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:125,27:0.18:152
chr8	109468230	rs10646253	T	TAGAA	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-0.312;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr8	109488937	rs1871685	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.085;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr8	109491399	rs2252767	A	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr8	109498656	rs10111934	T	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr8	109498681	rs76091150	A	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.260;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr8	109498717	rs34429579	C	CT	309.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.738;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr8	110255596	rs2980587	T	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr8	110283256	rs11550169	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.390;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr8	110283353	rs34660136	T	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.114;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr8	110293184	rs3830706	TA	T	831.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=21.89;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	110301944	rs2980616	A	C	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-0.594;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr8	110301951	rs2980617	C	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.260;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr8	110301998	rs2980618	T	C	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.728;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:103,38:0.27:141
chr8	110302047	rs2980619	T	G	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	110305614	rs143861307	T	C	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.784;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:252,77:0.23:329
chr8	110325969	rs78714120	A	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr8	110376861	rs7008687	G	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-1.149;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr8	110412519	rs1379369	G	A	1639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=2.073;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:258,99:0.28:357
chr8	110413824	rs2061294	C	T	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=2.177;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:206,62:0.23:268
chr8	110416813	rs1457286	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,28:0.29:95
chr8	110425594	rs4604408	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr8	110437384	rs4735133	A	G	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-2.417;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:177,60:0.25:237
chr8	110448635	rs10093885	A	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:80,33:0.29:113
chr8	110448873	rs59237049	G	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr8	110453466	rs11785973	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=1.715;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr8	110455321	rs1673408	C	A	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-1.446;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:333,112:0.25:445
chr8	110457011	rs72687015	A	G	2773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.446;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=1.391;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:485,159:0.25:644
chr8	110460355	rs370609517	CT	C	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.143;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:111,51:0.31:162
chr8	110460488	rs1673407	G	T	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.170;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:305,96:0.24:401
chr8	110461518	rs1673405	A	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.333;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr8	110465060	rs1673404	G	C	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-2.506;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:227,82:0.27:309
chr8	110471762	rs77992760	C	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr8	110471796	rs5893958	TA	T	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.633;QD=4.42;ReadPosRankSum=1.333;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:70,27:0.28:97
chr8	110473907	rs1026439	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chr8	110473965	rs1037697	AA	TT	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.804;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.907;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:92,35:0.28:127
chr8	110476341	rs138148833	AAATAT	A	524.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr8	110476993	rs1673398	A	G	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.228;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:283,80:0.22:363
chr8	110489620	rs1783148	A	T	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.761;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:377,114:0.23:491
chr8	110491840	rs1783147	C	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:85,32:0.27:117
chr8	110491877	rs1630942	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:99,41:0.29:140
chr8	110491964	rs1630134	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:80,30:0.27:110
chr8	110492949	rs1026437	G	C	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.237;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:171,61:0.26:232
chr8	110495192	rs2844254	T	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.570;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=12.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.011;SOR=2.280;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr8	110499063	rs17375750	T	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:96,42:0.30:138
chr8	110504088	rs56235913	CTTT	C	1412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.896;QD=6.09;ReadPosRankSum=-1.086;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:183,49:0.21:232
chr8	110505886	rs2607628	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-1.371;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:113,31:0.22:144
chr8	110516527	rs720139	T	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr8	110519814	rs1783153	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.213;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr8	110523207	rs72669109	A	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:56,26:0.32:82
chr8	110527556	rs55932317	A	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.767;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:92,16:0.15:108
chr8	110535444	.	C	CT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=2.340;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:66,22:0.25:88
chr8	110569827	rs2844231	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.887;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr8	110570060	rs2844232	A	G	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:235,104:0.31:339
chr8	110575806	.	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.312;QD=1.94;ReadPosRankSum=-0.856;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr8	110587975	rs61734661	C	T	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=2.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-0.791;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:272,97:0.26:369
chr8	110620037	rs376478633	TCACACACACA	T	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=7.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=1.226;SOR=2.608;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr8	110656773	rs11774663	T	C	2502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435;ClippingRankSum=0.000;DB;DP=879;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.557;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:673,203:0.23:876
chr8	110657514	rs3108849	G	A	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	113237045	rs4876458	C	T	6985.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:127,306:0.71:433
chr8	113241088	rs1592624	T	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:25,71:0.74:96
chr8	113243995	rs10095093	C	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr8	113254071	.	G	GCACACA	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.735;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr8	113254073	rs1007815	G	A	767.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.20;ReadPosRankSum=0.550;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr8	113254087	rs28698529	G	A	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.24;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	113259132	rs1895014	A	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr8	113266343	rs7830950	C	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr8	113267709	rs7006723	A	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr8	113299275	rs10505181	A	G	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:65,186:0.74:251
chr8	113308243	rs4876462	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr8	113323089	rs10505180	T	C	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:36,81:0.69:117
chr8	113323471	rs17637578	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr8	113347769	rs62514406	A	T	3349.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:41,136:0.77:177
chr8	113363350	rs7003308	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr8	113363511	rs7003500	T	C	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr8	113420495	rs35988509	TG	T	5243.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	113516209	rs10955625	G	A	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr8	113585637	rs7014796	A	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,56:0.77:73
chr8	113599196	rs7463547	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr8	113599207	rs7460155	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr8	113655643	rs112584207	A	AC	3342.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	113655644	rs55980973	A	T	3351.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	113657607	rs72678429	A	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	113662299	rs6992564	T	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	113662583	rs17652171	A	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-1.437;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:133,34:0.20:167
chr8	113697567	rs7839990	A	G	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	113702131	rs16883953	A	G	5690.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:97,250:0.72:347
chr8	113842039	rs10106945	G	A	5580.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:60,231:0.79:291
chr8	113842114	rs202095041	GCACACACACACA	G,GCACACACA	559.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;set=Intersection	GT:AF:DP	1/2:0.75,0.25:24
chr8	113959958	rs12114303	G	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr8	114111250	rs2030506	G	T	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	114448786	rs10682578	C	CCTT	900.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr8	114612543	rs4242557	A	C	4900.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:70,210:0.75:280
chr8	116504323	rs800883	A	T	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	117782385	rs4514005	C	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	117791733	rs979866	T	C	16030.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr8	117799012	rs1867840	A	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	117861000	rs67680123	T	TA	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=1.018;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr8	117864952	.	T	TA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.199;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr8	117887121	rs28365847	GC	G,GCC	16360.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=713;set=Intersection	GT:AF:DP	1/2:0.72,0.27:641
chr8	118184783	rs13266634	C	T	5555.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	118185025	rs3802177	G	A	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	118185041	rs2466295	C	T	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	118185063	rs2466294	C	G	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	118533382	rs7015216	T	A	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:29,97:0.77:126
chr8	118540863	rs72672136	T	C	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:48,159:0.77:207
chr8	118552032	rs140079946	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr8	118552374	rs57267838	CT	C	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=0.564;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr8	118819578	rs7837891	C	T	14010.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr8	118825354	rs4382503	C	T	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	118830820	rs10955837	T	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr8	118832020	rs17439693	G	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	119209773	rs2514743	C	T	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	119391791	rs5020517	T	C	10811.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:179,470:0.72:649
chr8	119592918	rs16891213	T	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr8	119938725	rs7844539	T	G	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.705;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:120,31:0.21:151
chr8	119938782	rs2228568	T	C	1392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=1.280;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:265,93:0.26:358
chr8	119940920	rs10554146	CAG	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.786;SOR=0.170;set=HC	GT:AD:AF:DP	0/1:32,5:0.14:37
chr8	119941173	rs3134046	A	G	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr8	119945166	rs1564858	G	A	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.214;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.704;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:311,92:0.23:403
chr8	120220775	rs71302978	CG	C	4644.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	120430167	.	G	T	700.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr8	120580546	rs200158900	T	TA	214.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=-1.374;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr8	120580640	rs2243749	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=-0.385;QD=4.38;ReadPosRankSum=-1.834;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr8	120581643	rs12544233	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.581;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=9.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-1.310;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:52,22:0.30:74
chr8	120583148	rs2305125	G	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.127;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr8	120583185	rs2305126	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr8	120596023	rs10283100	A	G	7543.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	120602908	rs935359	C	T	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.64;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	120602908	.	CTAAAAC	TTAAAAC,TTAAAAT	860	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=48,15;NR=61,18;PP=860,354;QD=8.20891020686;SC=TCAGGCAAGACTAAAACGAAA;SbPval=0.53;Source=Platypus;TC=109;TCF=48;TCR=61;TR=109,33;WE=120602922;WS=120602898;set=Platypus	GT:AF:DP	0/1:1.00:109
chr8	120602914	rs935360	C	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-0.131;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:76,38:0.33:114
chr8	120613747	rs2289888	C	T	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=1.013;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:400,154:0.28:554
chr8	120613822	rs2289889	C	T	1750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-1.149;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:273,105:0.28:378
chr8	120631657	.	CAA	C,CA	1407.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=128;set=Intersection	GT:AF:DP	1/2:0.23,0.64:101
chr8	120744349	rs956748	T	C	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.432;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=-0.260;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:219,102:0.32:321
chr8	120744399	rs956749	C	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:168,70:0.29:238
chr8	120754645	rs4871569	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr8	120773124	rs10096846	A	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.693;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.216;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr8	120790304	rs1509348	T	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	120790378	rs35033415	G	GA	2720.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr8	120793296	rs7002501	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	120795607	rs13268676	G	A	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr8	120801805	rs6469846	C	T	11691.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr8	120803637	rs9297605	C	G	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	120803654	rs11996390	C	T	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	120814020	rs7813438	A	G	4919.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	120816010	rs4871629	A	G	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	120818709	rs71571631	CTT	C	1960.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.40;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	120818715	rs140154778	T	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.443;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr8	120843775	rs7828086	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	120844782	rs17818842	G	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,55:0.65:84
chr8	120844846	rs11552092	G	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr8	120847078	rs1055133	C	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	120847123	rs1055131	C	T	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	120847188	rs1055130	T	C	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	120862767	rs112349158	T	TA	2738.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	120867693	rs55889147	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr8	120867899	.	A	G	3021.77	.	AC=1;AF=0.500;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:60,138:0.70:198
chr8	120886370	rs7840728	T	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr8	120940652	rs16893299	C	T	5365.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:80,229:0.74:309
chr8	120940867	rs28461628	G	A	6384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.02;ReadPosRankSum=-0.404;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:57,163:0.74:220
chr8	120940874	rs62528677	T	C	6196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.68;ReadPosRankSum=-1.079;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:52,150:0.74:202
chr8	120941953	rs7007554	G	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,24:0.30:81
chr8	121013744	rs11395630	G	GT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.861;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr8	121013770	rs2271900	A	G	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:25,73:0.74:98
chr8	121015156	rs80179318	G	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:121,58:0.32:179
chr8	121015361	rs6469887	A	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.457;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:77,19:0.20:96
chr8	121019040	rs56833210	C	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.506;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:126,28:0.18:154
chr8	121019301	rs59029393	G	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.559;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr8	121209000	rs2305597	A	C	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.540;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:223,65:0.23:288
chr8	121210069	rs2305598	T	C	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.904;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.332;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:248,87:0.26:335
chr8	121215991	rs2305600	T	C	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.219;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:158,40:0.20:198
chr8	121220395	rs3765062	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.710;SOR=0.279;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr8	121221871	rs10505377	C	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.480;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr8	121224620	.	T	C	189.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr8	121226143	rs71571669	C	CT	444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=5.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.011;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:71,32:0.31:103
chr8	121228679	rs4870723	A	C	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=2.657;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:497,154:0.24:651
chr8	121238764	rs77708573	A	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,40:0.83:48
chr8	121259843	rs2305604	T	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:151,71:0.32:222
chr8	121267617	rs993823	C	T	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.612;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:149,47:0.24:196
chr8	121290573	rs2305609	T	A	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	121292407	rs1869831	G	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	121293142	rs3054972	CTT	C	2715.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.229;QD=25.15;ReadPosRankSum=-0.563;SOR=0.454;set=HC	GT:AD:AF:DP	1/1:9,99:0.92:108
chr8	121293331	rs1563388	G	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	121295744	rs17237080	T	C	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	121309862	rs2219241	A	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	121326122	rs3217653	CAG	C	1961.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	121326427	rs10505379	G	T	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	121327673	rs7844334	C	T	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	121328383	rs78746650	A	AT	2472.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	121353416	rs1563390	G	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	121353651	rs1563391	A	G	9796.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr8	121353692	rs1563392	A	T	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	121354505	rs63246862	GG	AA	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	121354851	rs2290523	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	121381755	rs201373275	C	T	6307.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:85,279:0.77:364
chr8	121383048	rs4463470	T	C	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	121383082	rs6469922	A	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	121408195	rs6650	T	C	4734.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr8	121426425	rs68086071	AGT	A	444.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;MQ=60.83;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	121455558	rs5894521	G	GA	1908.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.559;QD=11.03;ReadPosRankSum=0.380;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:47,126:0.73:173
chr8	121457342	.	T	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DP=415;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-0.247;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:361,53:0.13:414
chr8	121471361	rs6984090	A	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	121483196	rs13248998	G	A	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	121509825	rs35918868	C	CTTT	490.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	121530061	rs13258768	C	T	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	121530190	rs13258848	A	G	14149.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr8	121530384	rs34340354	CTT	C	2375.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	121531154	rs13269481	G	A	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	121561201	rs138861807	GGA	G	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.008;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr8	121587165	rs6984991	G	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr8	124027840	rs117550079	C	T	6142.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:91,267:0.75:358
chr8	124034985	.	T	C	5641.77	.	AC=1;AF=0.500;AN=2;DP=382;set=Intersection	GT:AD:AF:DP	0/1:127,250:0.66:377
chr8	124042733	rs2891672	T	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	124084909	rs2385160	G	C	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	124089526	rs13254600	C	A	7848.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	124096315	rs4871346	C	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr8	124096721	rs4870845	A	G	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,48:0.76:63
chr8	124114333	rs10956116	G	T	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-1.466;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:120,44:0.27:164
chr8	124114560	rs10956117	T	C	5673.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:92,241:0.72:333
chr8	124114583	.	A	AGTGGCATTTGCC	2954	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=3;HapScore=1;MGOF=15;MMLQ=28;MQ=59.98;NF=3;NR=41;PP=2954;QD=20;SC=GTGCATTTGGAGTGGCGTTTG;SbPval=0.77;Source=Platypus;TC=138;TCF=13;TCR=125;TR=44;WE=124114606;WS=124114573;set=Platypus	GT:AD:AF:DP	1/0:94,44:0.32:138
chr8	124114588	.	C	CATTT	6534.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.051;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=3.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=-1.897;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:72,184:0.72:256
chr8	124114589	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=3;HapScore=1;MGOF=15;MMLQ=27;MQ=59.99;NF=33;NR=86;PP=2962;QD=20;SC=TTGGAGTGGCGTTTGCCACCT;SbPval=0.77;Source=Platypus;TC=187;TCF=61;TCR=126;TR=119;WE=124114606;WS=124114573;set=Platypus	GT:AD:AF:DP	1/0:68,119:0.64:187
chr8	124114589	.	G	GCCGTGGCA	6534.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.050;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.00;ReadPosRankSum=-2.250;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:72,170:0.70:242
chr8	124114598	rs146629815	C	CT	1850.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:48,92:0.66:140
chr8	124121798	rs16897969	A	G	6408.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:107,291:0.73:398
chr8	124139013	rs34125549	G	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.307;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.148;SOR=0.246;set=HC	GT:AD:AF:DP	0/1:73,26:0.26:99
chr8	124157166	.	AT	A	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=7.505;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.073;QD=2.24;ReadPosRankSum=-0.310;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr8	124194301	rs117923613	G	A	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.663;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:374,128:0.25:502
chr8	124228190	.	T	TA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.283;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:124,35:0.22:159
chr8	124359749	rs9297666	C	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-1.101;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr8	124381432	rs183409566	T	C	1628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=7.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.16;ReadPosRankSum=0.916;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:18,67:0.79:85
chr8	124408350	rs4871359	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	124440336	rs10628888	A	AAAG	1761.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	124442119	rs10658384	C	CA,CAA	699.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=-0.493;SOR=2.165;set=HC	GT:AD:AF:DP	1/2:2,12,21:0.34,0.60:35
chr8	124448689	rs9297669	T	C	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr8	124448947	rs6470148	A	G	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	124525377	rs3739288	T	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.583;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.402;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:59,10:0.14:69
chr8	124525483	rs3739287	C	T	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.319;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:191,65:0.25:256
chr8	124526607	rs2294088	G	A	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.607;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:106,36:0.25:142
chr8	124658210	rs16898671	C	T	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.490;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:314,108:0.26:422
chr8	124658400	rs77201406	G	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.730;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=1.064;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr8	124658404	rs11786734	A	G	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	124659121	rs1122389	C	T	4517.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:84,198:0.70:282
chr8	124659329	rs11991744	C	A	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	124663769	rs10109736	A	T	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	124664130	rs11780509	C	T	11217.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr8	124664167	rs11784192	T	C	10895.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr8	124664792	rs7387544	C	T	9255.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr8	124664873	rs7387792	AT	GC	13730.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr8	124665211	rs7387855	C	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	124693410	rs4471017	G	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr8	124693444	rs3739283	C	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	124693641	rs4314634	G	A	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.084;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:226,70:0.24:296
chr8	124696867	rs2294015	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=5.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.622;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:106,32:0.23:138
chr8	124715120	rs17257150	T	G	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr8	124749610	rs6470179	C	T	9586.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:189,434:0.70:623
chr8	124749651	rs11331268	TC	T	10330.73	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:180,398:0.69:578
chr8	124749704	rs10956146	T	G	5394.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:113,233:0.67:346
chr8	124824826	rs1946586	G	A	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:52,132:0.72:184
chr8	124982125	rs7008210	A	C	970.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=1.351;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:14,47:0.77:61
chr8	124982215	rs7008604	G	A	5418.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:92,230:0.71:322
chr8	124985780	rs10102622	A	C	3592.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:56,150:0.73:206
chr8	124987478	rs7465584	T	C	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:33,148:0.82:181
chr8	125033678	rs7820272	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr8	125035533	rs4521739	G	A	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr8	125035788	rs4358790	G	C	3724.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:59,167:0.74:226
chr8	125047370	rs4871451	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	125051966	rs4269524	A	G	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	125052018	rs4389914	T	C	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr8	125061895	rs4870887	G	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	125072426	rs4483140	T	C	11362.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr8	125076589	rs7012186	T	G	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	125076988	rs4871460	T	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	125082790	rs200078281	C	T	5742.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:103,260:0.72:363
chr8	125088636	rs9643188	A	G	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	125094847	rs10956163	C	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	125107201	rs6470219	G	A	6020.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.41;ReadPosRankSum=-0.827;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:2,226:0.99:228
chr8	125107207	rs6470220	C	T	10320.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr8	125110258	rs10956164	C	T	7141.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr8	125115420	rs56132579	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.131;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:87,30:0.26:117
chr8	125463098	rs3812474	A	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	125463250	rs3812475	T	C	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr8	125463544	rs11556913	T	C	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr8	125498547	rs3812471	C	T	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr8	125516237	rs76350429	T	C	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.474;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:145,48:0.25:193
chr8	125551364	rs34681068	A	G	9134.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:153,414:0.73:567
chr8	125551567	rs7010411	C	T	3642.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:58,153:0.73:211
chr8	125559415	rs34095749	C	T	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-1.551;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:56,105:0.65:161
chr8	125565328	rs3829037	T	C	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:78,177:0.69:255
chr8	125565978	rs13269215	C	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr8	125568162	rs12375359	A	G	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.624;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:271,105:0.28:376
chr8	125570144	rs4870903	G	A	1100.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	125574913	rs7015228	G	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr8	125574925	rs7015374	G	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr8	125577869	rs2303952	C	G	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	125579788	rs3857944	G	A	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	125579973	rs6470251	C	T	7867.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr8	125579990	rs6470252	C	T	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	125580928	rs2288664	A	G	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:55,142:0.72:197
chr8	125589956	rs7002655	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	125603298	rs11994203	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr8	125739749	rs891542	A	G	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr8	125877486	rs11994907	G	A	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:56,111:0.66:167
chr8	125877536	rs72072035	CCT	C	3801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.307;QD=27.55;ReadPosRankSum=-0.201;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:42,96:0.70:138
chr8	125877563	.	TTTC	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;ClippingRankSum=-0.000;DP=110;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-0.243;QD=1.14;ReadPosRankSum=-0.207;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr8	125877644	.	CT	C	1096.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.94;QD=42.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	125877647	.	CTT	C	1127.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.06;QD=43.37;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	125877655	rs201097181	T	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.06;QD=43.72;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	126021164	rs2288312	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr8	126023638	rs3750234	C	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:15,57:0.79:72
chr8	126030809	rs966946	T	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr8	126033195	rs9297709	T	C	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:63,163:0.72:226
chr8	126056215	rs11370883	G	GC	8975.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr8	126068873	rs2303523	T	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,87:0.71:122
chr8	126068886	rs2303522	T	C	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:43,97:0.69:140
chr8	126085363	rs10102230	T	C	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:43,131:0.75:174
chr8	126085586	rs12546285	G	A	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:62,162:0.72:224
chr8	126093815	rs79465975	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.689;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:137,42:0.23:179
chr8	126369898	rs2293890	G	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:191,78:0.29:269
chr8	126443348	rs2385113	C	T	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.228;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:187,53:0.22:240
chr8	126445505	rs13277396	G	C	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=2.645;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:145,49:0.25:194
chr8	128099269	rs4571699	A	G	14273.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr8	128099455	rs1840709	G	C	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr8	128099457	rs61262194	CGTG	C	6954.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	128099472	.	G	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=3.894;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-0.713;QD=3.29;ReadPosRankSum=0.621;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:111,33:0.23:144
chr8	128428061	rs4871789	A	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	128428795	rs6998254	G	A	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	128428823	rs7002225	G	C	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	128429262	rs9297754	G	C	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	128972721	rs9649959	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:93,41:0.31:134
chr8	129021000	rs1863562	A	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.180;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr8	129021002	rs2033102	G	A	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=0.000;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr8	129021179	rs2114358	G	A	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=2.105;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:232,79:0.25:311
chr8	129021262	rs2392823	C	T	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=1.302;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:113,30:0.21:143
chr8	129061242	rs2720660	A	G	1248.79	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:7,54:0.89:61
chr8	130760850	rs4144738	A	G	4878.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:85,217:0.72:302
chr8	130761030	rs4144736	G	C	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:26,86:0.77:112
chr8	130761644	rs4527833	C	T	5863.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	130762180	rs77523385	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=1.326;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:90,24:0.21:114
chr8	130762837	rs16904150	C	T	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.431;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:366,126:0.26:492
chr8	130772882	rs11276511	T	TGCCTGAGTCTTTCCCATA	6373.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	130788548	rs4733741	C	T	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	130874674	rs298611	A	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.674;QD=7.10;ReadPosRankSum=1.242;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	131092026	rs6415509	T	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.066;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr8	131104231	rs201422861	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr8	131124559	rs966185	T	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:35,125:0.78:160
chr8	131127831	rs2305513	T	C	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:34,118:0.78:152
chr8	131172968	rs10089819	C	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	131181348	rs11392401	A	AT	873.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr8	131191633	rs61558949	C	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.765;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:174,50:0.22:224
chr8	131192905	rs28495072	G	C	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	131193153	rs71572332	T	TA	1639.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:19,91:0.83:110
chr8	131199666	rs201930107	A	AT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.414;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr8	131353139	rs13265869	T	C	12308.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr8	131373887	rs10091130	C	G	11410.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr8	131413956	rs10090106	A	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	131414083	rs10090231	A	G	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	131414095	rs149895377	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.565;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:85,30:0.26:115
chr8	131414257	rs10090767	G	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	131792607	rs11382893	C	CA	1413.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.10;ReadPosRankSum=1.168;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:3,64:0.96:67
chr8	131793157	rs7824494	G	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr8	131812577	rs3067432	C	CAAA	1541.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.806;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.13;ReadPosRankSum=-1.339;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:11,48:0.81:59
chr8	131812899	rs263237	G	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	131833755	rs55879109	A	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr8	131848465	rs2259296	A	G	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:24,74:0.76:98
chr8	131859768	rs56309349	TA	T	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.068;QD=2.61;ReadPosRankSum=0.029;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:70,37:0.35:107
chr8	131897082	rs4128982	A	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	131916318	rs11781997	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.229;QD=1.44;ReadPosRankSum=0.095;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:162,33:0.17:195
chr8	131916374	rs76542596	AG	A	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.811;QD=5.00;ReadPosRankSum=1.222;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:57,18:0.24:75
chr8	131921956	rs12547243	A	G	1885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.299;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:451,139:0.24:590
chr8	131922186	rs71304398	C	CT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.437;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr8	131922214	rs28416041	T	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.934;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=1.384;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr8	131922223	rs56251739	G	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.597;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr8	132002576	rs1329803	G	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	132916459	rs28627763	T	C	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr8	132947529	rs4736523	A	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr8	132952727	rs34080810	A	AT	1785.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:59,111:0.65:170
chr8	132965979	rs77421091	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr8	132966028	rs10755935	T	C	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr8	132966045	rs112472883	CTT	C	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.754;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:62,30:0.33:92
chr8	132980709	rs6471017	G	A	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	132980781	rs2270879	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr8	132982824	rs1051221	A	G	5187.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:85,233:0.73:318
chr8	132988478	rs2270876	T	A	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr8	132996359	rs11783016	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr8	132996599	rs16904564	A	C	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr8	133008823	rs2270873	G	A	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	133015426	rs74919571	A	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.510;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr8	133023163	rs4736529	G	C	9435.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr8	133041177	rs6471024	G	A	2075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=2.397;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:37,54:0.59:91
chr8	133041179	rs6471025	A	G	2074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.80;ReadPosRankSum=2.308;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:37,54:0.59:91
chr8	133041242	rs6471026	C	G	4343.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:85,178:0.68:263
chr8	133045480	rs2202068	C	T	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:58,102:0.64:160
chr8	133046927	rs6471028	T	C	4641.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:79,203:0.72:282
chr8	133046977	rs7834841	A	G	6378.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:92,269:0.75:361
chr8	133048593	rs1472571	C	T	5030.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:87,216:0.71:303
chr8	133048619	rs7461611	T	C	5746.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:90,251:0.74:341
chr8	133049810	rs6992506	A	G	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:19,62:0.77:81
chr8	133050900	rs871959	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr8	133053188	rs2334791	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr8	133053309	rs7386782	T	C	5728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.68;ReadPosRankSum=1.584;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:66,141:0.68:207
chr8	133053318	rs7386783	T	C	5890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.90;ReadPosRankSum=0.604;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:69,150:0.68:219
chr8	133053714	rs1466884	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,53:0.70:76
chr8	133067315	rs4736538	G	A	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:55,102:0.65:157
chr8	133089975	rs2280851	A	G	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:37,91:0.71:128
chr8	133091905	rs11778661	C	T	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.936;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr8	133092138	rs2403730	G	A	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.409;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:286,108:0.27:394
chr8	133101818	rs6471038	G	A	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	133107830	rs7833441	T	C	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	133107893	rs10956634	A	G	9758.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:1,367:1.00:368
chr8	133108110	rs2469607	T	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr8	133111307	rs2469493	C	G	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	133112392	rs1370568	G	A	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:51,123:0.71:174
chr8	133116310	rs2436098	G	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:43,91:0.68:134
chr8	133146798	rs111447844	TGAGGA	T	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.45;MQRankSum=1.050;QD=22.98;ReadPosRankSum=0.451;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	133150103	rs2469515	C	T	3835.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:54,171:0.76:225
chr8	133175805	rs17653354	G	A	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:57,149:0.72:206
chr8	133175971	rs893391	G	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	133177179	rs16904613	C	T	3544.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:55,157:0.74:212
chr8	133184644	.	T	TAC	516.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=5.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=1.607;SOR=2.371;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr8	133184914	rs17575754	G	C	7541.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:100,313:0.76:413
chr8	133186704	rs17653902	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr8	133186749	rs41272377	C	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr8	133187675	rs17575971	A	G	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:24,70:0.74:94
chr8	133192449	rs41272387	A	G	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:52,141:0.73:193
chr8	133192521	rs41272389	A	G	3234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=1.196;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:70,149:0.68:219
chr8	133734455	rs34385955	C	CA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.417;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr8	133740259	.	AGT	A	99	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=28;MQ=59.55;NF=0;NR=6;PP=99;QD=17.0;SC=GTTCAGTGTGAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=31;TCF=2;TCR=29;TR=6;WE=133740270;WS=133740249;set=Platypus	GT:AD:AF:DP	0/1:25,6:0.19:31
chr8	133811435	rs2244885	T	A	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	133836432	rs235441	C	T	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	133844508	rs16904746	C	T	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	133858009	rs756201	C	T	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr8	133880334	rs180203	T	C	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	133900252	rs180223	T	G	16690.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr8	133900386	rs2069550	T	C	19027.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,723:1.00:723
chr8	133900840	rs10699743	A	ATG	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr8	133909847	rs10088696	C	T	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	133909974	rs853326	A	G	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.135;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	133910388	rs16904782	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	133910962	rs853324	T	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	133913525	rs853322	A	G	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	133920321	rs866468	A	G	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	133920411	rs2261147	T	C	8131.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	133920518	rs2069556	A	G	11536.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr8	133920624	rs853318	C	G	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	133920641	rs76906432	G	A	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	133931748	rs853304	T	C	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	133935499	rs7011493	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	133945753	rs72727428	C	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	133947836	rs2739061	T	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	133947859	rs2739062	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	133960991	rs2246624	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	133961237	rs2246611	G	C	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=27.48;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr8	133961279	rs2246608	C	T	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=27.32;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	133961299	rs34207784	GA	G	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.372;QD=9.62;ReadPosRankSum=-0.310;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:17,44:0.72:61
chr8	133978701	.	G	GTC	1709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=1.698;QD=17.45;ReadPosRankSum=0.249;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:40,58:0.59:98
chr8	133984058	rs2076740	C	T	11037.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr8	133984814	rs150963971	G	GT	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.595;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr8	133984821	rs1554541	G	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.38;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	133985115	rs1403486	A	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	133995475	rs10105779	A	G	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	133995807	rs117438739	G	C	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	134025781	rs10105991	A	T	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.09;SOR=1.273;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	134025781	.	AGA	TGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=78;NR=40;PP=2947;QD=20;SC=GATGACTGGAAGAATGCATGA;SbPval=0.54;Source=Platypus;TC=120;TCF=79;TCR=41;TR=118;WE=134025791;WS=134025771;set=Platypus	GT:AD:AF:DP	1/1:2,118:0.98:120
chr8	134025783	rs10105992	A	G	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=1.260;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	134050678	rs3739266	A	G	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	134052198	rs3835182	G	GCA,GCACA	3538.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.675;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;MQRankSum=0.500;QD=31.04;ReadPosRankSum=-0.582;SOR=1.339;set=HC	GT:AD:AF:DP	1/2:11,17,86:0.15,0.75:114
chr8	134062912	rs2252807	A	G	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	134062983	rs2252805	C	T	8131.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr8	134107223	rs2272706	A	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	134107618	rs10103453	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	134108295	rs10106820	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	134108546	rs2069569	T	C	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr8	134114716	rs733735	G	A	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	134129130	rs11340734	TA	T	626.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr8	134143910	rs17633144	A	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	134144113	rs2294024	C	T	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	134225068	rs10089461	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr8	134225396	rs55733525	T	TC	13709.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr8	134225434	rs13258091	T	C	8637.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr8	134239770	rs3739261	T	C	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	134251449	rs2929976	T	C	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	134260174	rs2227262	G	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	134266970	rs2272650	C	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	134267721	rs16904874	C	T	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	134267762	rs3824240	T	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	134270468	rs139790285	CCA	C	2447.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr8	134274226	rs2233324	C	G	21725.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,802:1.00:802
chr8	134292288	rs2977507	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	134292516	rs2272653	A	G	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:49,163:0.77:212
chr8	134308600	rs4236901	T	C	7525.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	134308858	rs71526287	A	C	4816.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:80,208:0.72:288
chr8	134308937	.	G	GAC	250.74	.	AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	134314037	rs112386359	CCAT	C	513.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr8	134314069	.	ATCT	A	185	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=23;MQ=59.73;NF=10;NR=2;PP=185;QD=15.9166666667;SC=CATCATCATCATCTTGTCTCA;SbPval=0.86;Source=Platypus;TC=30;TCF=22;TCR=8;TR=12;WE=134314079;WS=134314059;set=Platypus	GT:AD:AF:DP	0/1:18,12:0.40:30
chr8	134314369	rs2976580	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-0.309;QD=16.87;ReadPosRankSum=-1.112;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr8	134474148	rs1048479	C	T	3835.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:78,169:0.68:247
chr8	134475820	rs2075823	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:32,9:0.22:41
chr8	134488007	rs2230542	G	A	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.711;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:191,75:0.28:266
chr8	134537926	rs116749453	G	A	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.199;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:186,56:0.23:242
chr8	135522364	rs2289547	A	G	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.739;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:150,51:0.25:201
chr8	135522463	rs2289548	G	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.636;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.077;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr8	135524644	rs17761176	T	C	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:34,98:0.74:132
chr8	135524797	rs3739429	G	T	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-1.779;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:84,26:0.24:110
chr8	135524933	rs3739428	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.702;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr8	135524938	rs3739427	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	135545058	rs28621035	T	G	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:39,88:0.69:127
chr8	135577530	rs6999469	G	A	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=12.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.727;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:208,58:0.22:266
chr8	135577533	rs6988653	T	G	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=12.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=2.207;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:203,57:0.22:260
chr8	135595944	rs7825462	T	C	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:36,95:0.73:131
chr8	135596318	rs137885117	A	AAT	1048.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr8	135600716	rs894358	C	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr8	135602581	rs3739425	A	G	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.110;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:123,36:0.23:159
chr8	135602612	rs141077144	G	A	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.359;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:131,39:0.23:170
chr8	135612595	rs894343	A	G	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	135612745	rs894344	A	G	2548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.589;QD=4.32;ReadPosRankSum=0.909;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:422,168:0.28:590
chr8	135613624	rs894347	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr8	135614705	rs3739423	A	G	14447.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:1,526:1.00:527
chr8	135614972	rs3739422	A	G	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=6.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.688;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:217,67:0.24:284
chr8	135620894	rs3739421	T	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.094;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:82,23:0.22:105
chr8	135622640	rs2277138	T	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr8	135649548	rs17698962	A	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr8	135649848	rs12541381	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.834;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=4.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.130;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:174,43:0.20:217
chr8	135669810	rs17778003	C	T	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-0.132;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:15,57:0.79:72
chr8	135816955	rs41272393	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:21,62:0.75:83
chr8	136306291	rs4344113	G	C	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	136560952	rs12545587	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr8	136561153	rs11166602	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:110,44:0.29:154
chr8	136657198	rs4243846	T	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	136657534	rs4373553	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr8	136659195	rs28621864	C	T	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.222;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:192,74:0.28:266
chr8	136659426	rs3184618	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	139149406	rs6577876	G	A	7596.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:120,330:0.73:450
chr8	139149510	rs6577877	A	C	9230.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:172,404:0.70:576
chr8	139151375	rs4634694	C	T	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=0.198;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:24,60:0.71:84
chr8	139151421	rs4634695	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr8	139151428	rs35147483	C	CTG	1123.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr8	139153374	rs4909738	G	C	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr8	139153385	rs7816196	C	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:17,52:0.75:69
chr8	139155383	.	T	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.327;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.730;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:213,50:0.19:263
chr8	139158317	rs7006664	T	C	5236.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:71,229:0.76:300
chr8	139164570	rs3750307	C	T	6095.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:87,262:0.75:349
chr8	139165272	rs7835712	T	C	8400.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:148,370:0.71:518
chr8	139165289	rs7835830	T	C	8097.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:135,341:0.72:476
chr8	139165463	rs11311519	CA	C	893.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:10,49:0.83:59
chr8	139180058	rs16908405	A	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=9.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.622;SOR=1.648;set=HC	GT:AD:AF:DP	0/1:123,28:0.19:151
chr8	139189502	rs6985633	T	A	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	139190943	rs66488273	C	CA	1655.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:23,74:0.76:97
chr8	139190957	rs4909747	T	G	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	139269052	rs1512403	A	G	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:76,200:0.72:276
chr8	139321179	rs6577909	A	G	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr8	139323246	rs56096441	A	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	139380103	rs370836089	AAC	A	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.023;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr8	139614436	rs4394401	G	A	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	139614582	rs6993225	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	139617046	rs12546923	A	C	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	139618754	rs4471041	T	C	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr8	139620049	rs12681582	T	G	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	139620267	rs11166829	G	A	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	139626176	rs7000261	C	G	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	139631650	rs7009396	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	139635883	rs7836250	A	C	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	139635920	rs7839790	T	A	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	139638307	rs3924860	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	139647262	rs10091563	A	G	6945.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	139648892	rs11166830	G	A	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr8	139658747	rs4909439	C	T	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	139668032	rs11166832	T	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	139668300	rs12675091	C	T	5294.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr8	139672602	rs4072506	T	C	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	139672671	rs3935045	T	C	5855.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	139674213	rs11780732	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr8	139675869	rs11166835	G	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.754;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr8	139676082	rs4410946	A	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:111,53:0.32:164
chr8	139688656	.	AAAAGAAAGAAAG	A	952.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.59;MQRankSum=1.588;QD=28.02;ReadPosRankSum=0.897;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr8	139688697	rs7837674	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.915;MLEAC=1;MLEAF=0.500;MQ=61.21;MQRankSum=-1.174;QD=0.75;ReadPosRankSum=-1.560;SOR=1.298;set=HC	GT:AD:AF:DP	0/1:67,11:0.14:78
chr8	139688928	rs183577021	G	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.107;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.754;QD=5.73;ReadPosRankSum=0.526;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr8	139691995	rs140389566	TGTTA	T	10567.73	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:103,264:0.72:367
chr8	139696502	rs111396507	GAA	G	1591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.102;QD=17.88;ReadPosRankSum=0.114;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:21,68:0.76:89
chr8	139696635	rs4506262	T	C	7433.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr8	139697478	rs9644500	T	C	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-2.578;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:272,104:0.28:376
chr8	139701209	rs4909444	G	T	2202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-0.886;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:37,96:0.72:133
chr8	139712323	rs4909835	A	G	5481.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:3,208:0.99:211
chr8	139727808	rs5895555	AT	A	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.435;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr8	139727811	rs370969245	TTA	T	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.051;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr8	139734462	rs12678237	T	C	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	139736726	rs62527958	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:22,66:0.75:88
chr8	139737521	rs12545759	G	A	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr8	139749638	rs4409435	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	139767349	rs2318338	T	C	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.589;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:96,37:0.28:133
chr8	139774831	.	G	GCA	1028	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=2;MGOF=23;MMLQ=23;MQ=59.99;NF=3;NR=46;PP=1028;QD=21.0816326531;SC=AAACGCACGTGCACACACACA;SbPval=0.75;Source=Platypus;TC=109;TCF=9;TCR=100;TR=49;WE=139774840;WS=139774821;set=Platypus	GT:AD:AF:DP	0/1:60,49:0.45:109
chr8	139774852	rs149851445	C	CACACACA	1821.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr8	139774866	rs12550638	G	A	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr8	139819949	rs58366541	T	C	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.411;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:266,96:0.27:362
chr8	139823922	rs2318332	C	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	139824057	rs10101430	G	A	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.69;ReadPosRankSum=-1.434;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:14,48:0.77:62
chr8	139825393	rs6577951	A	G	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	139838912	rs2292927	T	C	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr8	139845520	rs6993839	G	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	139889972	rs4736255	A	G	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	140630990	rs2615374	A	G	14938.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr8	140842536	rs142059590	G	GCA	1050.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.506;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-7.773;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:56,109:0.66:165
chr8	140999234	rs7821102	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr8	141034189	rs9792174	A	T	3106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.748;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:69,181:0.72:250
chr8	141293914	.	T	TA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.935;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr8	141297613	rs6999767	T	C	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	141310486	rs12156047	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:66,26:0.28:92
chr8	141310644	rs12549048	G	A	6543.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:119,286:0.71:405
chr8	141436826	rs6998221	C	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr8	141445349	rs11267571	AAGAAAACAAAAAACAAAAACC	A	10840.73	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	141461062	rs3735803	G	A	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-1.668;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:275,83:0.23:358
chr8	141461185	rs3735802	A	G	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.339;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:324,106:0.25:430
chr8	141461266	rs3735801	A	G	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.489;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:279,92:0.25:371
chr8	141525465	rs2231527	T	C	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	141549346	rs35387146	CT	C	2746.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;MQ=60.43;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	141549383	rs13252337	A	G	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:33,89:0.73:122
chr8	141551407	rs2293939	G	A	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:34,86:0.72:120
chr8	141557497	rs2292782	T	C	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.444;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=7.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-0.745;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:88,36:0.29:124
chr8	141561393	rs2292779	G	C	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.982;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:125,33:0.21:158
chr8	141568622	rs2292778	G	A	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.722;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:412,141:0.25:553
chr8	141568699	rs2292777	A	G	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.094;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:221,77:0.26:298
chr8	141568725	rs2292776	G	A	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-1.698;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:149,59:0.28:208
chr8	141572497	rs2292774	GG	AA	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=0.122;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr8	141582896	rs13276958	T	C	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr8	141583108	rs11293451	AT	A	634.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.441;QD=7.84;ReadPosRankSum=0.067;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:22,59:0.73:81
chr8	141669818	rs3835176	AT	A	1764.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:40,105:0.72:145
chr8	141670907	rs9324530	C	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr8	141679817	rs10283368	T	C	2289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=-0.280;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:28,102:0.78:130
chr8	141685506	rs13249806	T	C	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:63,161:0.72:224
chr8	141685641	rs6998337	C	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:57,149:0.72:206
chr8	141685774	rs13278258	A	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr8	141744917	rs45613837	G	A	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.281;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:93,35:0.27:128
chr8	141749052	rs11464275	A	AT	177.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr8	141754888	rs372806706	GA	G	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.819;QD=1.43;ReadPosRankSum=0.121;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr8	141762558	rs6578132	G	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.328;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr8	141774282	rs7840381	A	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.418;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr8	141779826	rs10875458	C	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.507;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr8	141840645	rs4246127	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.230;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:60,10:0.14:70
chr8	141840739	rs4246128	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.708;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr8	141902735	.	TA	T	674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=1.831;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:61,48:0.44:109
chr8	141919468	rs62521903	C	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr8	141994240	rs13258775	T	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-0.788;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr8	141994271	rs13250222	CA	AC	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=-0.824;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr8	141994297	rs4961311	A	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.15;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	141994393	rs11781807	T	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	142138860	rs3739232	C	G	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=0.271;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,44:0.72:61
chr8	142146708	rs307772	T	C	8242.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.785;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr8	142161116	rs117465514	C	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.366;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.765;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:86,29:0.25:115
chr8	142161666	.	AT	A	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=3.829;QD=0.86;ReadPosRankSum=-1.200;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr8	142166214	rs555399	C	T	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	142170884	rs2289001	C	T	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	142173356	rs428300	C	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	142175563	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.288;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr8	142176507	rs412706	T	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr8	142266958	rs71504829	CT	C	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.843;QD=11.16;ReadPosRankSum=-2.952;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,32:0.78:41
chr8	142367335	rs10875472	T	C	11422.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr8	142367400	rs11167054	G	A	14091.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr8	142367559	rs11785629	G	A	11755.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr8	142368150	rs7388121	T	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	142368156	rs7388122	T	A	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	142444234	rs371671775	GGGGT	G	1194.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.20;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	142444240	rs28490954	G	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.37;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	142444254	rs28372340	T	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.41;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	142444526	rs10104447	G	C	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	142444780	rs10104806	G	C	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	142445055	rs13250250	G	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	142445062	rs35650977	T	TG	1147.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	142445095	rs28592919	C	T	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=45.74;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	142445095	.	CCA	TCT	724	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=3;HapScore=1;MGOF=37;MMLQ=28;MQ=60.31;NF=20;NR=11;PP=724;QD=25.0796088665;SC=TCCTCCAGCCCCAGTTTGCCT;SbPval=0.56;Source=Platypus;TC=34;TCF=22;TCR=12;TR=31;WE=142445105;WS=142445085;set=Platypus	GT:AD:AF:DP	1/1:3,31:0.91:34
chr8	142445097	rs28590477	A	T	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=44.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	142445538	rs11785585	T	C	19442.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr8	142445540	rs143051012	T	TGCCCGCGGCCCTGGCCC	21505.73	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr8	142445557	.	CT	C	1333	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=1;MGOF=134;MMLQ=24;MQ=59.93;NF=38;NR=95;PP=1333;QD=10.2180451128;SC=GGCCCTGGCCCTGCCCCTTCC;SbPval=0.73;Source=Platypus;TC=291;TCF=95;TCR=196;TR=133;WE=142445565;WS=142445547;set=Platypus	GT:AD:AF:DP	1/0:158,133:0.46:291
chr8	142445680	rs11784911	A	T	15483.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr8	142446923	rs11782383	C	T	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	142451177	rs7459842	G	A	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	142457961	rs13259488	A	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr8	142458053	rs6578185	A	G	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:177,77:0.30:254
chr8	142459814	rs7003306	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	142476529	rs7816228	G	A	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:60,113:0.65:173
chr8	142477752	rs11775650	T	C	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	142480610	rs4907398	C	T	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	142483063	rs4442176	C	T	2994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-1.174;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:43,138:0.76:181
chr8	142483145	.	AC	A	66.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.65;ReadPosRankSum=-2.100;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr8	142484144	rs2126099	T	C	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr8	142484366	rs33975024	A	AG	7942.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	142487333	rs2247440	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr8	142487856	rs11779508	A	G	5112.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:106,239:0.69:345
chr8	142488662	rs2613643	C	T	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	142488837	rs12547980	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr8	142489410	rs2748418	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:97,47:0.33:144
chr8	142489981	rs2748417	C	T	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	142490079	rs2613641	G	A	10282.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr8	142490120	rs2748416	G	T	9716.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr8	142490160	rs146578467	A	AC	3948.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:73,164:0.69:237
chr8	142490214	rs58431362	G	C	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:42,98:0.70:140
chr8	142490244	rs74978575	C	T	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,64:0.72:89
chr8	142505038	rs6578193	T	C	3414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.26;ReadPosRankSum=0.746;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:54,156:0.74:210
chr8	142505056	rs2246587	T	C	2981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-1.236;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:46,140:0.75:186
chr8	142505578	rs2748404	C	A	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:39,83:0.68:122
chr8	142506461	rs2613637	A	G	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:30,91:0.75:121
chr8	142517130	rs11464845	T	TG	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-1.323;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:60,41:0.41:101
chr8	142524759	rs72685453	A	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:87,41:0.32:128
chr8	142528250	rs79124969	C	T	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.609;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=0.317;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:29,40:0.58:69
chr8	142528260	rs72614018	G	C	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.41;ReadPosRankSum=-2.064;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:27,48:0.64:75
chr8	143257568	rs73375434	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr8	143257795	rs7007430	G	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.299;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr8	143310815	rs11167136	G	A	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	143352978	rs11777062	T	G	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	143365913	rs5895710	GT	G	4039.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	143381810	rs7822013	T	C	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	143382143	rs72687374	C	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.134;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:84,29:0.26:113
chr8	143399752	rs4514123	T	C	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:58,142:0.71:200
chr8	143399860	rs56055628	G	T	2972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=3.196;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:429,183:0.30:612
chr8	143412377	rs34722595	T	C	3919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.50;ReadPosRankSum=-2.160;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:48,176:0.79:224
chr8	143413136	rs10435683	C	T	7224.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:164,322:0.66:486
chr8	143425271	rs67990630	C	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:36,95:0.73:131
chr8	143425720	rs10100935	T	C	4352.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:78,197:0.72:275
chr8	143427178	rs33970858	C	G	15551.77	.	AC=1;AF=0.500;AN=2;DB;DP=978;set=Intersection	GT:AD:AF:DP	0/1:283,691:0.71:974
chr8	143436034	rs7814359	A	G	6741.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:109,296:0.73:405
chr8	143447503	rs7388487	C	T	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr8	143559431	rs10481394	T	C	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	143559634	.	C	T	4295.77	.	AC=1;AF=0.500;AN=2;DP=256;set=Intersection	GT:AD:AF:DP	0/1:67,188:0.74:255
chr8	143560504	rs13279697	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	143560555	rs13252518	T	C	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	143560895	rs12682337	G	A	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=45.38;SOR=1.852;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	143560898	rs12680973	T	C	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=43.64;SOR=1.874;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	143560996	rs66517676	AGCCAGCT	A	10920.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	143561206	rs4509377	G	A	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	143563087	rs11782438	C	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.883;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:177,57:0.24:234
chr8	143563161	rs11776057	G	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.110;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr8	143569940	rs13255287	T	C	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:10,66:0.87:76
chr8	143570281	rs73714305	G	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.138;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:123,28:0.19:151
chr8	143570921	rs7825551	A	G	13692.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr8	143599631	rs13281622	A	G	19657.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.27;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr8	143599634	rs13254098	T	G	19526.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=45.41;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr8	143599651	rs13281652	A	C	10354.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr8	143599665	rs13254123	T	C	8910.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr8	143599704	rs13281694	A	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	143599716	rs13278828	G	C	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	143599734	rs13281922	A	C	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	143599746	rs13281935	A	C	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=5.010;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	143599753	rs13281945	A	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=5.247;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	143603269	rs7463713	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	143603318	rs7462471	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr8	143603418	rs7460600	G	C	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr8	143605470	rs13267277	G	A	6765.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:110,295:0.73:405
chr8	143620570	rs7387853	A	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.396;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-0.538;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr8	143620822	rs7388198	T	C	2254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.983;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:247,130:0.34:377
chr8	143623459	rs34364916	G	T	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.259;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:504,170:0.25:674
chr8	143684655	rs58986836	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	143694775	rs28686812	G	C	8867.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:122,366:0.75:488
chr8	143695144	rs2234911	G	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.340;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=4.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.043;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:263,68:0.21:331
chr8	143695678	rs28403912	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.851;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-1.564;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr8	143695681	rs28641083	G	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-1.803;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr8	143696749	rs28660666	G	A	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	143740167	rs1056012	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	143746050	rs2976399	C	T	11155.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr8	143746069	rs3735999	T	C	11734.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr8	143746087	rs33951456	CCA	C	18036.73	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr8	143746416	rs754957	A	G	10649.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr8	143746701	rs3802232	A	G	7040.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr8	143747023	rs201592742	C	T	7822.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:140,348:0.71:488
chr8	143747271	rs2978973	C	G	8483.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr8	143761931	rs2294008	C	T	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:30,84:0.74:114
chr8	143762135	rs2920279	A	C	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr8	143762724	rs2976391	C	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.529;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:82,35:0.30:117
chr8	143762932	rs2976392	G	A	6346.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:84,281:0.77:365
chr8	143763043	rs2920298	A	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:43,90:0.68:133
chr8	143763259	rs71514093	T	TG	1723.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr8	143763490	rs2978982	T	C	11087.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:194,489:0.72:683
chr8	143763547	rs1045531	C	A	9648.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:131,406:0.76:537
chr8	143763618	rs2976393	C	G	20773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.48;ReadPosRankSum=0.901;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:153,507:0.77:660
chr8	143763622	rs2976394	C	T	20972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.26;ReadPosRankSum=0.114;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:153,518:0.77:671
chr8	143763690	rs10216533	G	A	12672.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:219,564:0.72:783
chr8	143763750	rs2976395	G	A	24430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.503;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.31;ReadPosRankSum=0.351;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:241,622:0.72:863
chr8	143763757	rs1045547	T	G	24664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.32;ReadPosRankSum=-0.176;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:237,634:0.73:871
chr8	143763958	rs1045574	G	A	8249.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:102,330:0.76:432
chr8	143764001	rs2976396	G	A	4855.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:62,190:0.75:252
chr8	143764101	rs1045605	C	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr8	143781858	rs1048831	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.466;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr8	143782044	rs2585174	A	G	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-1.012;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:401,123:0.23:524
chr8	143783240	rs10564411	CT	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-2.865;SOR=1.938;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr8	143784500	rs2244163	T	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=8.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.045;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:144,49:0.25:193
chr8	143808628	rs2280877	G	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.634;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr8	143808667	rs2257796	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.227;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr8	143808951	rs2585138	C	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.999;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:364,72:0.17:436
chr8	143809193	rs2257840	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.878;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr8	143823858	rs2572914	C	G	7256.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:99,302:0.75:401
chr8	143831926	rs62525593	G	A	5287.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:83,225:0.73:308
chr8	143832373	rs10808680	G	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr8	143833850	rs11775636	G	A	16960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.12;ReadPosRankSum=-2.392;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:122,423:0.78:545
chr8	143833856	rs11778314	C	T	16880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.79;ReadPosRankSum=-2.373;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:119,412:0.78:531
chr8	143845950	rs2585187	A	G	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.796;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	143845953	rs2717554	T	C	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=1.711;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	143845982	rs1075542	T	C	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=0.642;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:36,100:0.74:136
chr8	143849626	rs7006366	T	A	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.62;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	143857265	rs2585125	G	T	14237.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:2,533:1.00:535
chr8	143857441	rs3214637	A	AGG	3191.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:33,82:0.71:115
chr8	143867157	rs60714144	C	T	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.193;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.446;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:118,39:0.25:157
chr8	143867841	rs2717607	C	G	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=7.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.079;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:153,50:0.25:203
chr8	143867905	rs2572925	C	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.915;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.847;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:117,45:0.28:162
chr8	143922620	rs3764795	C	T	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.796;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:195,56:0.22:251
chr8	143956693	rs4541	G	A	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=17.832;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-8.968;QD=4.14;ReadPosRankSum=-0.538;SOR=2.608;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr8	143956803	rs28418310	G	C	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.422;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-3.673;QD=6.04;ReadPosRankSum=0.414;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr8	143956808	rs6395	A	C	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=6.253;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=-3.716;QD=5.95;ReadPosRankSum=1.437;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr8	143956907	rs6393	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr8	143956925	rs6392	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr8	143956965	rs6391	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr8	143957163	rs6403	C	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:135,57:0.30:192
chr8	143957405	rs6471570	A	C	1764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.237;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:444,126:0.22:570
chr8	143957856	rs7822986	G	A	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.965;QD=4.40;ReadPosRankSum=-0.887;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:131,45:0.26:176
chr8	143957886	rs10105643	A	C	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.227;QD=3.37;ReadPosRankSum=1.825;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr8	143958427	rs6387	C	T	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-3.227;QD=2.81;ReadPosRankSum=1.369;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:201,62:0.24:263
chr8	143959067	rs80101721	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=8.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-1.246;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr8	143959188	rs9657020	G	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-3.253;QD=3.12;ReadPosRankSum=0.585;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:155,46:0.23:201
chr8	143959219	rs11775687	G	A	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:65,169:0.72:234
chr8	143959250	rs7818826	T	C	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-8.276;QD=3.47;ReadPosRankSum=-0.513;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:204,64:0.24:268
chr8	143959289	rs7818953	T	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.024;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-8.051;QD=2.70;ReadPosRankSum=-0.261;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:182,48:0.21:230
chr8	143960971	rs6388	A	T	1456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.666;QD=5.30;ReadPosRankSum=1.709;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:196,79:0.29:275
chr8	143961005	rs6410	T	C	2046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.167;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=5.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-1.446;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:263,116:0.31:379
chr8	143961102	rs4534	C	T	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.352;QD=4.25;ReadPosRankSum=1.110;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:443,160:0.27:603
chr8	143993640	rs6433	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.991;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.791;SOR=2.103;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr8	143993660	rs6432	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.435;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr8	143994041	rs4545	C	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.352;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:176,69:0.28:245
chr8	143994321	rs6435	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:62,18:0.23:80
chr8	143994349	rs6397	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:51,14:0.22:65
chr8	143994361	rs4736320	T	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=54.67;MQRankSum=-0.726;QD=1.87;ReadPosRankSum=0.768;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr8	143994427	rs6394	A	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	143994702	rs4538	G	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.260;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-0.177;QD=0.98;ReadPosRankSum=-0.798;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:104,15:0.13:119
chr8	143994944	rs13252628	T	G	8037.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:79,337:0.81:416
chr8	143994978	.	CAAA	C,CAA	9628.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=296;set=Intersection	GT:AF:DP	0/1:0.83:286
chr8	143994981	.	AA	CG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=4;HapScore=1;MGOF=14;MMLQ=24;MQ=60.0;NF=59;NR=125;PP=2944;QD=20;SC=CCCTGAGCAAAAACAGAGCCC;SbPval=0.4;Source=Platypus;TC=235;TCF=71;TCR=164;TR=184;WE=143994990;WS=143994968;set=Platypus	GT:AD:AF:DP	0/1:51,184:0.78:235
chr8	143994982	.	A	ACG	9628.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-6.351;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=6.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.14;ReadPosRankSum=2.576;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:46,236:0.84:282
chr8	143995761	rs4536	C	T	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:67,182:0.73:249
chr8	143997309	rs13257680	C	T	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:50,98:0.66:148
chr8	143997795	rs11781816	C	T	6381.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:121,280:0.70:401
chr8	143998426	rs13268153	C	T	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:54,155:0.74:209
chr8	143998662	rs13276226	G	A	13936.77	.	AC=1;AF=0.500;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	0/1:232,601:0.72:833
chr8	144097333	rs62525085	C	T	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.422;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:90,40:0.31:130
chr8	144097377	rs62525087	C	G	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.212;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=1.847;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:79,42:0.35:121
chr8	144099678	rs17061979	G	A	9433.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:126,416:0.77:542
chr8	144102747	rs11547127	C	T	9389.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:140,401:0.74:541
chr8	144124609	rs11136300	T	C	11037.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:2,422:1.00:424
chr8	144125727	rs6997455	T	A	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	144126244	rs4612316	T	C	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr8	144130550	rs12677862	C	G	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	144162364	rs6993880	C	T	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	144295154	rs61747644	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:113,48:0.30:161
chr8	144295321	rs13253453	C	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	144332012	rs6558339	T	C	7548.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr8	144332082	rs11136275	T	C	5490.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:96,247:0.72:343
chr8	144351394	rs7819483	A	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:124,53:0.30:177
chr8	144351632	rs6558341	A	G	15199.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr8	144357213	rs3817675	G	C	13670.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:224,572:0.72:796
chr8	144357479	rs3812433	C	G	7469.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:98,310:0.76:408
chr8	144357975	rs2293924	C	T	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	144357992	rs2293923	A	G	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:48,134:0.74:182
chr8	144358302	rs1056146	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr8	144358381	rs1056148	G	A	6407.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:74,254:0.77:328
chr8	144358539	.	C	A	14476.77	.	AC=1;AF=0.500;AN=2;DP=936;set=Intersection	GT:AD:AF:DP	0/1:295,638:0.68:933
chr8	144378184	rs2235115	C	G	5857.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:78,236:0.75:314
chr8	144378868	rs7386259	A	G	16971.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr8	144391452	rs11136285	G	A	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:19,62:0.77:81
chr8	144391728	rs7386475	A	G	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:62,179:0.74:241
chr8	144391796	rs10088567	G	A	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:31,77:0.71:108
chr8	144391873	rs10105378	A	G	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:34,80:0.70:114
chr8	144391924	rs10099789	CT	TC	7029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.425;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.41;ReadPosRankSum=1.908;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:73,166:0.69:239
chr8	144391930	rs10091561	G	A	7173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.38;ReadPosRankSum=1.505;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:77,185:0.71:262
chr8	144392368	rs2293925	G	A	3231.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:50,142:0.74:192
chr8	144397694	rs7815223	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.470;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr8	144397798	rs35506042	G	GGA	3445.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:41,88:0.68:129
chr8	144398029	rs13275896	A	G	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:64,185:0.74:249
chr8	144398123	rs2293928	G	C	5318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.934;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.71;ReadPosRankSum=0.694;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:47,132:0.74:179
chr8	144398132	rs2293927	T	C	5566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.26;ReadPosRankSum=-1.111;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:49,148:0.75:197
chr8	144398396	rs2293926	C	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr8	144399856	rs3215410	TC	T	1624.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	144399885	rs2272637	A	C	1882.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.043;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.821;QD=25.10;ReadPosRankSum=-1.312;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:29,46:0.61:75
chr8	144399885	.	AG	CT	1131	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=28;MQ=60.14;NF=23;NR=11;PP=1131;QD=34.8372904371;SC=GGTGTGGGGCAGGCTCACCGC;SbPval=0.39;Source=Platypus;TC=67;TCF=48;TCR=19;TR=34;WE=144399894;WS=144399875;set=Platypus	GT:AD:AF:DP	0/1:33,34:0.51:67
chr8	144399886	rs2272636	G	T	1882.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.716;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.966;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.796;QD=24.14;ReadPosRankSum=-1.728;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:29,49:0.63:78
chr8	144399993	rs146827342	G	A	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.818;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.595;QD=4.29;ReadPosRankSum=-0.721;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:144,53:0.27:197
chr8	144400065	rs2272635	C	T	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=1.442;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:181,66:0.27:247
chr8	144400089	rs2272634	C	T	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:67,173:0.72:240
chr8	144403292	rs12680237	C	T	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:42,139:0.77:181
chr8	144403485	rs11544482	G	C	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.077;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:346,110:0.24:456
chr8	144406705	rs11544484	C	T	3077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.300;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:492,194:0.28:686
chr8	144406881	rs12680498	G	A	5021.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:88,218:0.71:306
chr8	144408616	rs3829019	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr8	144409934	rs35096181	C	A	11420.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	144409938	rs11424162	A	AG	11709.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr8	144411759	rs3812436	T	C	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=7.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.97;ReadPosRankSum=0.740;SOR=0.067;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chr8	144411767	rs2467894	C	A	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.503;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.80;ReadPosRankSum=-0.143;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,33:0.79:42
chr8	144417051	rs2956274	A	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	144425247	rs7837655	C	A	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	144457678	rs72703712	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:107,44:0.29:151
chr8	144459231	.	C	CGT	2478.73	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr8	144459233	rs3889112	C	T	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr8	144459329	rs901760	C	T	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr8	144460569	rs901762	G	A	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	144462169	rs3812440	A	G	25751.77	.	AC=2;AF=1.00;AN=2;DB;DP=969;set=Intersection	GT:AD:AF:DP	1/1:1,965:1.00:966
chr8	144463267	rs13275994	C	T	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	144463686	rs3817720	C	T	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	144511389	rs7386685	C	G	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	144511953	.	ATGGTGG	A,ATGG	13388.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;QD=40.57;SOR=2.162;set=HC	GT:AD:AF:DP	1/2:0,28,302:0.08,0.92:330
chr8	144511995	rs1872900	A	G	9065.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr8	144520147	rs2294117	G	A	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr8	144522185	rs117239159	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	144522387	rs2272754	GA	TT	3648.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.54;ReadPosRankSum=-0.202;SOR=0.476;set=HC	GT:AD:AF:DP	1/1:3,87:0.97:90
chr8	144523018	rs2294115	G	A	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	144523323	rs2294114	G	A	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	144618379	rs11774857	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	144641161	rs4292703	A	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	144641753	rs4874151	A	C	10907.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr8	144642151	rs146152826	G	GAGGGCAGGGC	11032.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	144642178	rs11774948	T	C	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr8	144642596	rs7835865	T	C	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr8	144642626	rs7831485	A	G	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr8	144642986	rs11136298	T	C	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	144643169	rs1545536	C	T	22112.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	1/1:0,862:1.00:862
chr8	144643321	rs12541790	A	G	11875.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr8	144643603	rs2290414	G	A	10093.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr8	144644583	rs1349806	G	C	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr8	144644787	rs1377663	T	A	12642.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr8	144649550	rs7010602	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	144649601	rs13268196	A	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	144649625	rs10097556	T	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	144649650	rs13254352	C	A	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	144649690	rs13254590	C	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	144649968	rs13255489	C	T	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	144650503	rs13271361	G	A	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	144650550	rs10101426	T	C	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	144650925	rs13279011	A	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	144651554	rs6983410	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	144651576	rs7013931	C	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	144653218	rs4874152	A	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	144654131	.	C	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=3.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.373;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:83,28:0.25:111
chr8	144654255	rs4874153	A	G	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	144654582	rs4874154	C	A	20294.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,460:1.00:460
chr8	144654586	rs4874155	G	C	20449.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr8	144657269	rs2290417	G	C	7940.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr8	144657969	.	TGGG	T	375	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=7;HapScore=2;MGOF=18;MMLQ=27;MQ=51.57;NF=1;NR=8;PP=375;QD=45.0;SC=CTGCCCTGGGTGGGGAAGGGG;SbPval=0.91;Source=Platypus;TC=12;TCF=3;TCR=9;TR=9;WE=144657979;WS=144657959;set=Platypus	GT:AD:AF:DP	1/1:3,9:0.75:12
chr8	144658370	rs896955	C	T	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr8	144659608	rs12678314	A	G	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	144659949	rs2305496	C	A	13415.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:2,496:1.00:498
chr8	144660189	rs896953	A	G	2264.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.663;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.33;ReadPosRankSum=1.360;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:1,85:0.99:86
chr8	144660257	rs2015562	G	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	144660509	.	T	TCCGGC	2039	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=3;HapScore=1;MGOF=8;MMLQ=24;MQ=62.7;NF=2;NR=32;PP=2039;QD=60.6764705882;SC=ACGTCCGGACTCCGCCCCGCC;SbPval=0.56;Source=Platypus;TC=36;TCF=2;TCR=34;TR=34;WE=144660531;WS=144660499;set=Platypus	GT:AD:AF:DP	1/1:2,34:0.94:36
chr8	144660511	rs201754569	C	CG	2399.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.70;QD=43.63;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	144660513	.	C	CCCGA	2424.73	.	AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.70;QD=44.09;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	144660523	rs4475500	A	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=48.74;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	144663019	rs150016304	G	A	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	144663075	rs1809148	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	144668590	rs11780087	T	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	144671244	rs4874160	C	A	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	144671685	rs6985081	G	C	12839.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr8	144671922	rs3812448	G	A	12458.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr8	144672541	rs751932	T	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	144680535	.	C	A	1573.77	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,68:0.59:115
chr8	144686998	rs114073802	T	C	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	144688348	rs118119099	G	T	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	144689289	rs11549789	C	T	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	144689686	rs4874169	A	G	19808.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,767:1.00:767
chr8	144690832	rs62522171	C	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	144695867	rs6558377	A	G	11048.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr8	144696203	rs4634659	T	C	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr8	144697041	rs1049832	A	G	9269.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr8	144698690	rs142744967	G	T	24615.77	.	AC=2;AF=1.00;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	1/1:1,909:1.00:910
chr8	144732363	rs4875017	T	C	10467.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr8	144732418	rs4874084	A	G	10053.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr8	144776109	rs11786757	A	G	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr8	144800552	rs6997797	C	T	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	144801347	rs5895782	AC	A	3620.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	144802735	rs6420190	AG	CC	19731.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr8	144808003	rs4875045	G	C	2448.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.864;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.514;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.51;ReadPosRankSum=-0.783;SOR=1.947;set=HC	GT:AD:AF:DP	1/1:1,88:0.99:89
chr8	144809804	rs13254035	G	A	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	144811278	rs9969456	G	A	13899.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr8	144811338	rs9969600	C	G	11111.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr8	144818311	rs11463418	A	AT	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=4.447;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.693;QD=9.08;ReadPosRankSum=2.057;SOR=1.926;set=HC	GT:AD:AF:DP	0/1:21,48:0.70:69
chr8	144822037	rs7831467	G	T	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:4,187:0.98:191
chr8	144824898	rs7463016	A	C	12835.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr8	144825272	rs4074641	A	G	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	144825290	rs4074640	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	144873666	rs9314416	G	C	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	144873779	rs9314417	G	A	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	144873997	rs6982642	A	C	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=44.96;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	144874000	.	C	T	4556.77	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=44.24;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	144874366	rs7461245	T	C	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr8	144874554	rs6991873	T	C	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	144877812	.	C	T	962.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	144885580	rs13281371	A	G	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	144885754	rs142753854	G	A	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.695;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	144886628	rs34099611	C	T	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	144887656	rs7830442	A	G	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr8	144889172	rs10866915	A	G	10778.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr8	144890873	rs10098508	A	T	13497.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr8	144894496	rs4875060	G	A	15717.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr8	144894641	rs4875061	C	T	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	144894702	rs11404566	C	CT	2281.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	144895553	rs13251492	G	A	12218.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr8	144900756	rs7833632	A	G	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	144904690	rs4875063	A	G	16868.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr8	144911360	rs7461986	A	G	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	144940069	rs35186960	C	CA	617.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.32;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	144940081	rs60421625	C	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.22;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	144940230	.	G	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=1;MGOF=46;MMLQ=23;MQ=53.25;NF=239;NR=39;PP=2962;QD=20;SC=AGAAGCTGCAGGTACGTGAGG;SbPval=0.99;Source=Platypus;TC=504;TCF=368;TCR=136;TR=278;WE=144940238;WS=144940220;set=Platypus	GT:AD:AF:DP	1/0:226,278:0.55:504
chr8	144940290	rs201976887	C	G	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.990;ClippingRankSum=0.000;DB;DP=1019;ExcessHet=3.0103;FS=4.219;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-3.337;QD=0.75;ReadPosRankSum=0.334;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:878,125:0.12:1003
chr8	144940300	rs4977191	G	A	30454.77	.	AC=2;AF=1.00;AN=2;DB;DP=1031;set=Intersection	GT:AD:AF:DP	1/1:0,1022:1.00:1022
chr8	144942903	rs6558399	T	C	16273.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr8	144944176	rs12542653	T	C	7684.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	144944638	rs56118826	G	A	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	144945191	rs12543389	T	C	10291.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr8	144945792	rs13255110	T	C	11194.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr8	144946252	rs11136330	C	T	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	144993069	rs28455570	G	A	18442.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr8	145004546	rs11780911	G	A	11267.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr8	145066886	rs13277282	A	G	19262.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr8	145106938	rs60949781	GCC	G	11729.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	145107795	rs11136253	G	A	13122.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr8	145149823	rs13256214	G	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	145149860	rs6984764	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	145150101	rs11541475	T	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	145150832	rs7820984	A	G	7433.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr8	145151665	rs200379271	TGGCAGTGGGCATGTGGAATACTTCTCC	TCAGTGGGCATGTGGAATACTTCTCC,T	13380.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=347;set=Intersection	GT:AF:DP	1/1:1.00:298
chr8	145151668	.	CAGTGGGCATGTGGAATACTTCTCCA	C	13344.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr8	145151693	.	A	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=68;NR=88;PP=2965;QD=20;SC=ATACTTCTCCACTACCCCCAG;SbPval=0.34;Source=Platypus;TC=185;TCF=73;TCR=112;TR=156;WE=145151701;WS=145151655;set=Platypus	GT:AD:AF:DP	1/1:29,156:0.84:185
chr8	145158446	rs12549149	C	T	3966.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	145158503	rs11136254	G	T	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr8	145160646	rs11136256	T	C	9755.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,361:1.00:362
chr8	145161823	rs11546144	G	A	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr8	145161896	rs13263342	T	C	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	145162598	rs10091401	G	C	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	145163414	rs4977196	C	G	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	145163647	rs4977195	T	C	6793.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr8	145164617	rs13281660	G	T	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	145164847	rs13250446	A	G	14800.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr8	145168298	rs5895787	T	TG	2768.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	145168611	rs7463214	A	G	6164.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr8	145168824	rs7836836	T	C	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr8	145170440	rs12543080	A	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	145170704	rs13278106	A	T	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr8	145171003	rs4977193	G	C	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	145171201	rs1132230	A	G	18648.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:2,678:1.00:680
chr8	145223191	rs6982878	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	145223288	rs34819224	C	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	145223499	rs6558308	G	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	145234508	rs7842771	G	C	11694.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr8	145245631	rs6558318	T	C	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	145245944	rs10108542	A	G	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	145254159	rs7464776	T	C	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	145255553	rs6558320	C	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	145536169	rs35680822	C	G	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	145537356	.	GCCT	G	2984	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=6;HapScore=1;MGOF=58;MMLQ=24;MQ=55.42;NF=0;NR=64;PP=2984;QD=20;SC=GCGCCTCCCCGCCTCCCCGCC;SbPval=1.0;Source=Platypus;TC=82;TCF=3;TCR=79;TR=64;WE=145537390;WS=145537346;set=Platypus	GT:AD:AF:DP	1/0:18,64:0.78:82
chr8	145537362	.	C	CCG	2360	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=3;HapScore=1;MGOF=58;MMLQ=24;MQ=54.93;NF=0;NR=63;PP=2360;QD=37.6666666667;SC=CCCCGCCTCCCCGCCTCCCCG;SbPval=1.0;Source=Platypus;TC=71;TCF=3;TCR=68;TR=63;WE=145537390;WS=145537346;set=Platypus	GT:AD:AF:DP	0/1:8,63:0.89:71
chr8	145537372	.	GCGC	G	2984	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=5;HapScore=1;MGOF=58;MMLQ=24;MQ=55.69;NF=0;NR=57;PP=2984;QD=20;SC=CCGCCTCCCCGCGCCGCCTCC;SbPval=1.0;Source=Platypus;TC=57;TCF=0;TCR=57;TR=57;WE=145537390;WS=145537346;set=Platypus	GT:AD:AF:DP	1/0:0,57:1.00:57
chr8	145537393	.	GCGC	G	2674	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=5;HapScore=1;MGOF=233;MMLQ=24;MQ=56.25;NF=0;NR=39;PP=2674;QD=20;SC=CCGCCTCCCCGCGCCGCCTCC;SbPval=1.0;Source=Platypus;TC=39;TCF=0;TCR=39;TR=39;WE=145537403;WS=145537383;set=Platypus	GT:AD:AF:DP	0/1:0,39:1.00:39
chr8	145537395	.	G	A	832	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=3;HapScore=1;MGOF=270;MMLQ=21;MQ=55.88;NF=0;NR=17;PP=832;QD=50.9865419145;SC=GCCTCCCCGCGCCGCCTCCCC;SbPval=1.0;Source=Platypus;TC=42;TCF=0;TCR=42;TR=17;WE=145537403;WS=145537383;set=Platypus	GT:AD:AF:DP	1/0:25,17:0.40:42
chr8	145537416	.	G	A	151	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=2;MGOF=358;MMLQ=24;MQ=55.34;NF=0;NR=14;PP=151;QD=13.2693723248;SC=GCCTCCCCGCGCCGCCTCCCC;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=14;WE=145537424;WS=145537406;set=Platypus	GT:AD:AF:DP	1/0:1,14:0.93:15
chr8	145537458	.	T	C	2220	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=1;HapScore=1;MGOF=104;MMLQ=24;MQ=59.08;NF=26;NR=4;PP=2220;QD=75.1590404182;SC=GCCTCCCCGCTTCCCCGCCCC;SbPval=0.71;Source=Platypus;TC=31;TCF=26;TCR=5;TR=30;WE=145537466;WS=145537448;set=Platypus	GT:AD:AF:DP	1/1:1,30:0.97:31
chr8	145541787	.	A	G	5186.77	.	AC=1;AF=0.500;AN=2;DP=364;set=Intersection	GT:AD:AF:DP	0/1:131,231:0.64:362
chr8	145550338	rs6599571	T	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	145557497	rs7013127	A	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	145577824	rs880701	C	G	17617.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=1.243;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr8	145577829	rs880702	A	C	17326.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.299;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr8	145577999	rs2272664	T	A	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	145578296	rs2272663	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	145579949	.	G	GGCCGCT	9071.73	.	AC=2;AF=1.00;AN=2;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=47.50;SOR=1.374;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr8	145579951	.	A	ACC	9177.73	.	AC=2;AF=1.00;AN=2;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=47.31;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr8	145579954	.	G	GGCACGGCACAAGGGCCCCCACACCTCACGTGCCTGGCCACAACCCAGAACAA	15630.73	.	AC=2;AF=1.00;AN=2;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=81.41;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	145580984	rs2272666	A	G	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	145581557	rs2280840	G	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	145582839	rs3817681	T	C	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	145603114	rs6599528	A	C	8837.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr8	145615776	rs1383095	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	145617534	rs148509143	TGGGGGTGCAAGGTGA	T	5187.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	145618309	rs1052951	G	A	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=2.117;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	145618312	rs1052952	G	A	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=2.157;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	145618597	rs1871532	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	145618862	rs2272661	C	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	145620232	rs141555679	C	T	14314.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr8	145620296	rs2280837	C	G	11572.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr8	145621556	rs2280836	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	145622903	rs199964666	G	A	5037.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:95,229:0.71:324
chr8	145622923	rs2977835	T	C	8781.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr8	145623098	rs2977834	T	C	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr8	145623378	.	CCCCACCACCGTCCCCACCCACCTACCTCCTTCCAGCAGGCGGATG	C	2932.73	.	AC=2;AF=1.00;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=42.50;SOR=2.551;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	145623382	.	A	AGGGCCCAACCACCTCCCCG	2974	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=6;HapScore=1;MGOF=3;MMLQ=29;MQ=57.96;NF=4;NR=30;PP=2974;QD=20;SC=GCGCCTCCCCACCACCGTCCC;SbPval=0.99;Source=Platypus;TC=74;TCF=22;TCR=52;TR=34;WE=145623390;WS=145623372;set=Platypus	GT:AD:AF:DP	1/1:40,34:0.46:74
chr8	145623446	rs56293142	C	G	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.90;QD=51.70;SOR=2.352;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	145623622	.	C	A	404	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=6;HapScore=2;MGOF=18;MMLQ=26;MQ=40.77;NF=10;NR=9;PP=404;QD=23.093221713;SC=CCACCTCCCCCCCACCGTCCC;SbPval=0.46;Source=Platypus;TC=27;TCF=13;TCR=14;TR=19;WE=145623630;WS=145623612;set=Platypus	GT:AD:AF:DP	1/1:8,19:0.70:27
chr8	145623881	rs141269368	C	CCCCAGGT	17902.73	.	AC=2;AF=1.00;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	1/1:10,662:0.99:672
chr8	145623901	.	G	GTCCCAGA	2979	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=3;HapScore=1;MGOF=22;MMLQ=28;MQ=60.17;NF=83;NR=213;PP=2979;QD=20;SC=CAGGTCCCAGGCCCTGCCCCT;SbPval=0.74;Source=Platypus;TC=477;TCF=153;TCR=324;TR=296;WE=145623909;WS=145623891;set=Platypus	GT:AD:AF:DP	0/1:181,296:0.62:477
chr8	145623963	rs4317614	G	A	24774.77	.	AC=2;AF=1.00;AN=2;DB;DP=925;set=Intersection	GT:AD:AF:DP	1/1:0,922:1.00:922
chr8	145624640	rs2293963	C	T	13592.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:2,504:1.00:506
chr8	145625283	rs2291135	T	C	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.52;SOR=2.237;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	145625524	rs145341443	GCC	G	2396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=66.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.55;ReadPosRankSum=1.922;SOR=6.242;set=HC	GT:AD:AF:DP	0/1:11,76:0.87:87
chr8	145625538	rs141140965	C	G	4293.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=40.350;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.78;ReadPosRankSum=2.673;SOR=2.241;set=HC	GT:AD:AF:DP	1/1:7,124:0.95:131
chr8	145639521	rs4992316	T	C	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	145639726	rs2272662	T	C	3242.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:57,149:0.72:206
chr8	145640411	rs2977838	A	G	8912.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr8	145652404	.	G	A	6308.77	.	AC=2;AF=1.00;AN=2;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr8	145660833	rs1010427	G	A	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	145661320	rs2721140	G	A	6196.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	145661675	rs7830832	G	A	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	145662377	rs2242270	A	C	21721.77	.	AC=2;AF=1.00;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	1/1:0,826:1.00:826
chr8	145665516	rs2306383	T	C	11307.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr8	145665637	rs2620650	A	G	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	145665699	rs2721188	C	T	4535.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	145667405	rs2242264	C	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	145668443	rs760477	G	A	7780.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,283:0.99:285
chr8	145668481	rs2242263	C	T	13604.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr8	145677469	rs2245052	A	G	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr8	145677973	rs2256094	C	T	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	145678020	rs1871538	C	T	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	145689915	rs2721167	G	A	7909.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr8	145690308	rs2721166	C	T	9734.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr8	145690348	rs2620644	G	A	11902.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr8	145690396	rs2620645	A	C	9877.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr8	145691915	rs112422823	G	C	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	145692110	rs2306388	C	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	145692296	rs2250895	A	C	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	145692385	rs2250891	C	T	7007.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	145692762	rs2291133	G	T	16603.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr8	145692812	rs2250779	C	T	20950.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,741:1.00:741
chr8	145693720	rs2250657	A	G	8873.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr8	145697244	rs4925823	G	A	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr8	145699601	rs2721176	T	C	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	145732398	rs45592435	G	A	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	145737636	rs4925828	A	G	22831.77	.	AC=2;AF=1.00;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	1/1:2,832:1.00:834
chr8	145738581	rs67678060	TG	T	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-2.039;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:39,25:0.39:64
chr8	145738767	rs11342077	CG	C	28341.73	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:0,766:1.00:766
chr8	145742514	rs2721190	A	G	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr8	145742716	rs2721189	C	A	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr8	145745182	rs2721172	T	C	16160.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr8	145756170	rs873884	G	A	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	145806681	rs2620647	A	G	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	145830757	rs4541972	A	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	145830894	rs5895822	CT	C	11520.73	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr8	146000095	rs2958493	A	G	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	146003567	rs2294120	A	G	8272.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr8	146028061	rs2958527	A	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	146033347	rs2976653	T	C	8744.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr8	146036012	rs2953882	C	T	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	146036234	rs2958511	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	146056279	rs12682087	C	T	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	146068594	rs1735408	T	C	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	146115367	rs2735906	A	G	11517.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:1,420:1.00:421
chr8	146221823	rs2978409	A	T	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	154795	rs2785333	T	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-7.135;QD=3.06;ReadPosRankSum=0.146;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr9	214706	rs540473	G	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr9	215057	rs481905	T	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr9	215269	rs636922	A	C	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr9	271638	rs506121	C	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr9	286593	rs529208	C	A	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,63:0.53:119
chr9	289481	rs34722895	C	CAT	3213.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:88,85:0.49:173
chr9	304478	rs17664919	C	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr9	316998	rs2296824	C	T	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr9	317195	rs10813355	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr9	325811	rs3831138	T	TC	936.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr9	325817	rs2360277	T	C	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	327938	rs2296825	G	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr9	327957	rs2296826	T	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr9	327996	rs2296827	T	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr9	328006	rs2296828	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr9	338906	rs12340920	G	A	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:74,62:0.46:136
chr9	365574	rs35000707	CT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=5.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.951;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr9	376929	rs7020921	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	379965	rs10758420	T	C	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr9	421032	rs2297079	C	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr9	421860	rs2297080	A	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr9	421980	rs2297081	T	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr9	422157	rs10217719	T	C	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	429719	rs7854035	T	C	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	432081	rs1329377	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	432140	rs79680407	CTTT	C,CT	1353.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.393;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.323;QD=30.08;ReadPosRankSum=0.661;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:2,24,19:0.53,0.42:45
chr9	432330	rs7036567	C	G	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	432470	rs10974403	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr9	432503	rs7046598	T	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	433697	rs7020380	T	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	433708	rs7041371	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	433978	rs2360712	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	439102	rs10733508	G	C	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	439453	rs10758598	G	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	441827	rs10974467	C	T	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	441952	rs1887957	G	A	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.98;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	442030	rs1887958	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr9	446352	rs10814952	G	C	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	450060	rs10121936	A	G	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	451906	.	C	T	484	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=1;MGOF=227;MMLQ=26;MQ=60.0;NF=5;NR=0;PP=484;QD=103.754242509;SC=TATACATATACATATGCATAT;SbPval=1.0;Source=Platypus;TC=19;TCF=19;TCR=0;TR=5;WE=451914;WS=451898;set=Platypus	GT:AD:AF:DP	1/1:14,5:0.26:19
chr9	451943	.	A	ATG	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.013;QD=10.88;ReadPosRankSum=0.048;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr9	451957	rs181571163	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-2.077;QD=3.72;ReadPosRankSum=-0.114;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr9	451977	.	ATTTTTTTTTTT	A	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.932;QD=17.71;ReadPosRankSum=0.632;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:12,30:0.71:42
chr9	712060	rs4465020	G	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	712599	rs11789987	C	T	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	732302	rs10815562	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	732779	rs10815563	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	734665	rs142267604	C	CA	645.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr9	734679	rs10429625	G	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	735654	rs7872783	C	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	738238	rs2296052	G	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	740769	rs368007873	CTTTTTT	C	13096.73	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;QD=39.21;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:1,333:1.00:334
chr9	740972	rs7032867	G	C	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	741001	rs7027152	T	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	742342	rs10733535	A	G	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	842315	rs56130013	AC	A	127.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	967981	rs279895	G	C	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	977556	rs279891	C	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	990582	.	A	T	5959.77	.	AC=1;AF=0.500;AN=2;DP=554;set=Intersection	GT:AD:AF:DP	0/1:281,271:0.49:552
chr9	990840	rs7021244	C	T	4354.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:190,204:0.52:394
chr9	1051930	rs112585712	C	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=1.553;SOR=1.326;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr9	1055870	rs12350001	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	1057204	rs4741029	A	G	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:74,72:0.49:146
chr9	1057318	rs9140	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	1057351	rs4741030	A	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr9	2029018	rs10964468	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr9	2032845	rs1112534	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr9	2033182	rs1112533	A	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr9	2056861	rs150124430	G	GT	1800.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr9	2073514	rs7864080	A	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr9	2073839	rs2066111	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr9	2096774	rs17712152	G	A	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr9	2097548	rs60293281	GA	G	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.480;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr9	2101545	rs10738570	T	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.891;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr9	2103950	rs1986592	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr9	2116037	rs6601	G	A	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,57:0.45:127
chr9	2182062	rs2281786	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr9	2622121	rs12379259	A	G	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	2622134	rs34881325	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr9	2622146	rs369552432	ACGGCGGCGG	A	1376.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,38:0.38:99
chr9	2622278	rs2219143	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr9	2644002	rs10967320	C	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.266;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-0.156;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:35,24:0.41:59
chr9	2644008	rs10967321	C	A	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.935;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=-1.484;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr9	2718534	rs12237048	C	G	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr9	2804393	rs12171	A	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr9	2811505	rs2270888	G	A	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=2.553;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:50,88:0.64:138
chr9	2828765	rs2173904	C	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr9	2830915	rs41272897	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr9	2831147	rs73639497	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr9	2831149	rs2292000	A	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr9	2833267	rs10217194	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr9	3225319	rs41312822	A	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,51:0.54:94
chr9	3263224	rs633893	T	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	3324206	rs2274487	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr9	3330151	rs13299535	C	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	3344954	rs3012670	C	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr9	3829187	rs16919724	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr9	3829212	rs7029652	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr9	3855963	rs34461578	C	CA	1402.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:98,60:0.38:158
chr9	3879693	rs4740742	C	T	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	3898509	rs10758532	A	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	3932283	rs535978	C	G	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	3932521	rs587571	T	C	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	4117713	rs927315	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr9	4118111	rs6415788	G	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.931;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.896;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:17,31:0.65:48
chr9	4118208	rs806052	A	G	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	4285986	rs10758591	G	C	2080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-1.527;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:99,100:0.50:199
chr9	4298589	rs35338539	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=-1.414;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr9	4490880	rs12002726	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	4544721	rs45518336	A	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr9	4561374	rs10974624	C	T	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.298;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:63,60:0.49:123
chr9	4561421	rs72694015	T	C	2093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.463;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:79,102:0.56:181
chr9	4561596	rs10974625	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr9	4561651	rs1805311	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr9	4564432	rs2228622	G	A	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=1.240;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:48,58:0.55:106
chr9	4566210	rs7022772	A	C	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	4572480	rs3780412	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr9	4574022	rs12682807	A	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr9	4576680	rs301430	T	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr9	4576774	rs1471786	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr9	4646363	rs301469	C	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	4655915	rs7869353	G	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	4661749	rs143968076	T	TCCAACTGCGGTTTTGCTTCAAGG	668.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;QD=44.58;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	4661853	rs301489	C	T	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	4662065	rs301488	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr9	4722462	rs2274821	C	A	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr9	4722685	rs10758645	C	G	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	4793254	rs841990	G	A	1133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.230;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:78,61:0.44:139
chr9	4833436	rs463578	GC	AT	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr9	4834034	rs466547	A	G	141.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	4834299	rs2296769	T	G	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=0.757;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr9	4844459	rs159432	G	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=1.010;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr9	4844507	rs295259	G	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	4850141	rs12375841	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr9	4850421	rs455864	C	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.18;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	4850421	.	CCCTTGGGCCA	GCCTTGGGCCA,GCCTTGGGCCG	529	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=10;MMLQ=24;MQ=59.61;NF=15,7;NR=21,9;PP=375,529;QD=11.3825336819;SC=GGGCTATGCACCCTTGGGCCA;SbPval=0.51;Source=Platypus;TC=37;TCF=15;TCR=22;TR=36,16;WE=4850444;WS=4850411;set=Platypus	GT:AF:DP	0/1:0.97:37
chr9	4850431	rs10974810	A	G	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.95;ReadPosRankSum=0.720;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr9	4850436	rs462480	G	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.20;ReadPosRankSum=0.000;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr9	4860267	rs115482041	C	T	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:86,81:0.49:167
chr9	4860300	rs15583	A	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	5467955	rs2297136	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr9	5557612	rs186854996	G	A	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=3.246;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr9	5557672	rs7854303	T	C	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	5656558	.	CT	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.062;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr9	5720172	rs10758700	C	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr9	5732483	rs7850299	T	C	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:125,107:0.46:232
chr9	5732532	rs76581785	GT	G	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=2.288;QD=7.37;ReadPosRankSum=-0.365;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr9	5742798	rs201838674	G	GAAA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.56;ReadPosRankSum=-0.327;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	5747187	rs10815278	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr9	5754988	rs7038447	A	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr9	5755022	rs12685557	T	A	61.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr9	5762533	rs1543526	A	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr9	5763873	rs117881871	C	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,42:0.42:100
chr9	5769494	rs1323273	A	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr9	5769998	rs734548	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr9	5770047	rs734549	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr9	5774225	rs3739648	T	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr9	5791151	rs1342854	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr9	5801071	rs10815283	A	G	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr9	5801121	rs3824444	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr9	5805001	rs10975289	A	G	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=2.285;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:64,55:0.46:119
chr9	5810288	rs7856883	A	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr9	5811337	.	CA	C	829.73	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr9	5813077	rs35748220	A	AT	932.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr9	5832728	rs1131727	G	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr9	5906774	.	T	C	352.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr9	5919584	.	A	ACACACACACACACAC	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=-0.396;QD=7.90;ReadPosRankSum=0.518;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr9	5921844	rs117286418	G	T	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:102,110:0.52:212
chr9	5923326	rs7045445	C	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	5929167	rs7029054	T	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	5953951	.	C	T	168.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr9	5968416	rs3739649	A	G	6830.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr9	5969249	rs10739080	A	G	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	5969517	rs7030731	C	T	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	5988333	rs2291055	C	T	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	6253571	rs10975519	C	T	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-1.229;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:55,53:0.49:108
chr9	6253710	rs10975520	G	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr9	6254568	rs10975521	T	A	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=0.779;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:45,33:0.42:78
chr9	6254694	rs7857724	A	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr9	6255881	rs1332290	T	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr9	6328947	rs3847262	T	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	6330915	rs1037885	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	6468447	rs3739654	A	G	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:52,65:0.56:117
chr9	6475319	rs7852539	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=1.455;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr9	6499821	rs57099869	TC	T	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.207;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr9	6499994	rs1929929	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr9	6506038	rs33962342	C	T	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:106,122:0.54:228
chr9	6534845	rs2282160	T	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	6553514	rs3215923	A	AT	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.510;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.173;QD=6.97;ReadPosRankSum=-0.879;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:67,48:0.42:115
chr9	6591972	rs62568998	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr9	6602377	.	AT	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-2.453;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr9	6620483	rs34280433	CA	C	45	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=-1.465;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	6720831	rs7040131	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr9	6875054	rs12553688	A	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr9	6875085	rs60286758	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr9	6986267	rs912207	T	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr9	6986291	rs3750488	C	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr9	6990364	rs2760657	G	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=8.566;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=-0.872;QD=4.95;ReadPosRankSum=0.310;SOR=2.509;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr9	6990548	rs35634202	ATT	A	811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=0.486;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr9	7015793	rs74622166	T	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr9	7016001	rs818883	G	T	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	7076371	rs1570511	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr9	7076463	rs1570512	G	A	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:104,103:0.50:207
chr9	7076586	rs1570513	G	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:69,74:0.52:143
chr9	7103816	rs3763651	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:84,69:0.45:153
chr9	7105548	rs10758825	G	C	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:95,85:0.47:180
chr9	7105651	rs1407863	C	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr9	7170006	rs7022348	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr9	7798435	rs1254	C	T	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;MQ=59.64;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	7798518	rs4742410	G	C	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	7799787	rs2297554	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.728;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr9	8331475	.	T	C	111.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr9	8331574	rs146237556	A	AAACTTACCATTCTTGAACTGT	890.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=0.891;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr9	8338778	rs35311961	T	TA	243.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr9	8338847	rs143960430	C	CAGAGAGAGAGAGAGAG	413.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr9	8338878	rs3847286	A	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr9	8340168	rs4742483	C	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	8340226	rs10976972	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr9	8341280	.	GA	G	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.106;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr9	8376477	rs1566447	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.89;ReadPosRankSum=-1.922;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr9	8389364	rs2279776	C	G	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	8436560	rs1359117	A	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr9	8436703	rs1359118	C	G	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:70,57:0.45:127
chr9	8451816	rs4742505	TT	AC	2797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.127;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:92,75:0.45:167
chr9	8454413	rs10977121	A	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	12694255	rs34509359	C	A	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:160,179:0.53:339
chr9	12698471	rs35866166	T	C	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:120,85:0.41:205
chr9	12704725	rs2733832	C	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:53,68:0.56:121
chr9	12708269	rs17280629	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr9	12708910	rs2733834	C	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	12708958	rs147565972	T	TA	3510.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	12775861	rs139315731	T	TGGCGGC,TGGCGGCGGC	4399.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=129;set=Intersection	GT:AF:DP	1/2:0.50,0.50:98
chr9	12775889	rs3750501	A	G	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,69:0.55:125
chr9	13109111	rs10732331	C	T	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	13112116	rs10809904	A	G	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	13115422	rs2274647	T	G	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	13125201	rs2297003	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr9	13126470	rs10738323	C	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr9	13136564	rs10809908	A	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-1.004;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr9	13147723	rs7024892	T	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr9	13150531	rs10756457	T	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr9	13165218	rs10960959	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr9	13175715	rs3831219	TGAG	T	929.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr9	13175908	rs141883334	G	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:82,78:0.49:160
chr9	13175987	rs1331674	C	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr9	13176312	rs2274856	C	T	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr9	13192320	rs1331676	C	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	13206106	.	T	TA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.090;QD=0.30;ReadPosRankSum=0.673;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:99,19:0.16:118
chr9	14120655	rs6474818	A	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	14155769	rs12349255	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	14306944	rs4741362	A	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	14313712	rs2273933	T	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	14618856	rs3802482	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	14619168	rs10810187	A	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	14640055	rs6474849	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	14690419	rs10961672	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	14690447	rs2382477	G	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	14693270	rs71476227	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	14737506	rs10961689	T	G	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	14737616	rs10961690	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	14737743	rs10511596	C	A	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	14740300	rs2270528	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	14756318	rs57793294	C	CA	1644.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:98,100:0.51:198
chr9	14756483	rs10810233	A	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:87,79:0.48:166
chr9	14759725	rs7045154	A	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	14770580	rs1874109	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr9	14770825	rs7860370	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=3.083;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr9	14773991	rs67935055	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr9	14774329	rs7018782	T	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	14775853	rs1032474	A	G	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.500;MQ=60.94;MQRankSum=0.042;QD=19.20;ReadPosRankSum=0.116;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:44,43:0.49:87
chr9	14775859	rs10733289	G	A	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.373;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.500;MQ=60.76;MQRankSum=-0.441;QD=18.70;ReadPosRankSum=-0.463;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:46,48:0.51:94
chr9	14801687	rs10738380	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr9	14801710	rs35870000	C	A	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.260;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:33,42:0.56:75
chr9	14842267	rs41305315	T	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr9	14846036	rs2779500	C	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:83,68:0.45:151
chr9	14846122	rs2642404	C	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	14851617	rs2818940	T	C	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	14851703	rs729492	G	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	14859356	rs10961757	T	C	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:84,100:0.54:184
chr9	14868653	rs7856810	A	T	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.202;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:54,44:0.45:98
chr9	15000551	rs7029527	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	15017273	rs10961831	C	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr9	15183462	rs35283660	CA	C	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-1.272;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr9	15183532	rs2057478	C	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr9	15188106	rs1407977	T	C	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:67,61:0.48:128
chr9	15190494	rs475932	A	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	15192720	rs566820	A	G	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	15199813	rs41265314	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr9	15203775	rs11789697	G	A	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:160,146:0.48:306
chr9	15214313	rs199807096	A	AGT	144.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr9	15447361	rs3830477	A	AACT	1250.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	15457853	rs10756669	G	A	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	15458080	rs35960449	A	AT,ATTT	2522.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.974;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.271;QD=22.52;ReadPosRankSum=-1.942;SOR=1.302;set=HC	GT:AD:AF:DP	1/2:4,58,50:0.52,0.45:112
chr9	15468414	rs34331255	CCTT	C	4032.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	15468480	rs4741507	T	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	15486958	rs2737828	A	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	15509963	rs62571017	T	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr9	15591372	rs4741510	T	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=1.254;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr9	15623462	rs405352	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-0.495;QD=3.96;ReadPosRankSum=-2.047;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr9	15623473	.	G	GCACACA	228.86	.	AC=1;AF=0.500;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;QD=20.81;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr9	15678995	rs7037893	C	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.46;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	15695418	rs1355172	G	A	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	15723547	rs10810436	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr9	15784496	rs2382540	C	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr9	15784560	rs55780067	A	G	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:95,83:0.47:178
chr9	15784631	rs1539172	A	G	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:71,82:0.54:153
chr9	15864506	rs770196	C	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	15882977	.	A	AGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT	97.37	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.46;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	15883263	rs809493	G	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	15922137	rs1328285	A	G	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	15922325	rs2225181	A	T	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=0.917;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:49,43:0.47:92
chr9	16215744	rs16934264	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr9	16253322	rs10733309	A	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	16419519	rs117452684	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr9	16431230	rs9298764	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr9	16582890	rs149223772	G	GAC	765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=0.571;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:11,35:0.76:46
chr9	16664871	rs35822374	T	TG	404.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	16685539	rs7046068	T	C	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	16699287	rs10738447	C	T	8718.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	16699292	rs10738448	C	T	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	16727698	rs1360285	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	16738269	rs7858914	G	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	16738307	rs7858709	A	C	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=45.67;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	16738312	rs7858712	A	G	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=42.77;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	16738338	rs35475650	GA	G	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr9	16738556	rs4007684	C	CTTTT	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	17135434	rs12003380	G	C	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	17143511	rs36086880	A	AG	1182.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	17235563	rs3814137	C	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	17235642	rs67017076	AT	A	387.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	17236365	rs3814138	C	T	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	17236376	rs3814139	A	G	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	17309311	rs78359995	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr9	17332484	rs5896735	AT	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.032;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr9	17340864	rs3808782	C	T	5780.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	17342383	rs1442527	C	T	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	17388125	rs2274916	C	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	17457513	rs10963108	A	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	17463136	rs11790475	C	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr9	17464402	rs1442532	G	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	17494911	rs2499057	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr9	17494947	rs2499058	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr9	17579190	rs4961573	C	G	5000.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	17579198	rs4961574	T	G	5123.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	17579370	rs3739487	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	17747173	rs3780226	C	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr9	17747279	rs2031456	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr9	17761379	rs1886589	C	T	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.966;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:74,66:0.47:140
chr9	17775367	rs2209429	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr9	17781818	rs2224955	C	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr9	17781935	rs2209431	G	C	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr9	18504916	rs2277160	T	A	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	18573360	rs13299349	G	A	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	18573918	rs13300372	G	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	18574406	rs1341069	G	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	18657558	rs776776	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr9	18661848	rs41268977	T	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr9	18676027	.	G	A	967.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr9	18680679	rs1412672	C	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr9	18681695	.	T	TGTGTGG	261	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=13;HapScore=3;MGOF=50;MMLQ=24;MQ=57.66;NF=7;NR=0;PP=261;QD=38.1428571429;SC=AGTCCTCGTGTGGGGGGGGGG;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=7;WE=18681704;WS=18681685;set=Platypus	GT:AD:AF:DP	1/0:1,7:0.88:8
chr9	18681696	.	G	GTGTTGGGA	95	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=11;HapScore=3;MGOF=50;MMLQ=24;MQ=56.99;NF=7;NR=0;PP=95;QD=14.4285714286;SC=GTCCTCGTGTGGGGGGGGGGG;SbPval=1.0;Source=Platypus;TC=9;TCF=9;TCR=0;TR=7;WE=18681704;WS=18681685;set=Platypus	GT:AD:AF:DP	0/1:2,7:0.78:9
chr9	18681821	rs13293151	A	G	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chr9	18717903	rs530120	G	A	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	18718114	rs4977339	A	C	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.284;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:57,39:0.41:96
chr9	18718139	rs532101	C	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	18721748	rs539785	T	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr9	18770891	rs78209301	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr9	18775810	rs934472	C	A	8066.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr9	18776840	rs1549986	A	C	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	18777368	rs7033684	T	C	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	18817246	rs1433809	A	C	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	18817372	rs7873880	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	18826261	rs35525189	GT	G	2178.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.019;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=-0.217;SOR=0.620;set=HC	GT:AD:AF:DP	1/1:18,125:0.87:143
chr9	18826500	rs934469	T	C	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	18829952	rs41304755	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:136,75:0.36:211
chr9	18830087	rs7026429	G	A	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	18887753	rs731370	C	A	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	18889544	rs10963819	A	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	18889789	rs34099646	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	18890376	rs35233264	G	A	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	18890446	rs7026374	A	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	18907049	rs5896821	A	AT	3585.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	18907122	rs1327506	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	18950787	rs6475273	G	A	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	18950895	rs7021572	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	18950980	rs6475274	A	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	19032907	rs17810415	A	G	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:98,114:0.54:212
chr9	19033006	rs10963921	G	T	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:41,60:0.59:101
chr9	19033035	rs7035738	G	A	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr9	19033058	rs10963922	C	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr9	19058483	rs150852615	C	A	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=53.04;MQRankSum=-0.965;QD=8.42;ReadPosRankSum=-0.387;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:49,32:0.40:81
chr9	19058921	rs62622380	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr9	19063108	rs13302748	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr9	19076673	rs13286328	G	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=0.511;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr9	19086618	rs372363190	CA	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.809;QD=6.80;ReadPosRankSum=2.341;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr9	19086979	rs2171957	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.140;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr9	19089375	rs41269007	A	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr9	19093287	rs41269011	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,50:0.58:86
chr9	19096666	rs189824591	C	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr9	19096832	rs4977495	A	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr9	19123745	rs10963972	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr9	19126476	rs3802335	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr9	19295941	rs10757051	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr9	19299209	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=2.133;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr9	19299362	rs10738535	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr9	19326053	rs2256093	G	T	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr9	19336169	.	G	GTATATATA	335.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr9	19341045	rs928128	A	G	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.915;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:54,32:0.37:86
chr9	19347204	rs2666801	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	19350980	rs2803125	C	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.676;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr9	19357276	rs10667709	C	CTTA	484.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr9	19369764	rs151013945	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.736;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr9	19369778	rs10964112	T	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.213;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=8.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=2.379;SOR=0.051;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr9	19372275	rs41270105	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr9	19376408	rs2277151	A	G	2632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=0.553;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:101,126:0.56:227
chr9	19550308	rs4977555	A	T	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	19573483	rs149743267	AACACACACACACACACACACACACAC	A	1108.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=42.64;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	19576815	rs2247818	C	T	940.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	19576816	rs56172301	GGT	G	931.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	19576949	rs2383101	T	G	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	19619509	rs1885220	C	T	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	19622072	rs4977307	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	19622268	rs4977308	T	C	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	19895675	rs71510710	C	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr9	20346377	rs66943046	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=2.108;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr9	20502091	.	AGG	A	73.25	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.31;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	20620575	rs2073855	G	A	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:68,69:0.50:137
chr9	20621644	rs116782392	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr9	20621901	rs142328824	C	CGTGT	1283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.092;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:53,40:0.43:93
chr9	20720599	rs4977898	A	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr9	20764870	rs10511687	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,67:0.54:124
chr9	20765097	rs7871811	A	G	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr9	20778631	rs7875153	A	G	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	20862506	rs4977779	G	A	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=1.557;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:74,56:0.43:130
chr9	20862515	rs4977780	A	C	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.60;SOR=1.717;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	20866974	rs7875872	C	G	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	20882117	rs7026225	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	20885240	rs2383156	G	A	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:36,66:0.65:102
chr9	20916828	rs4977812	A	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr9	20923579	rs7044452	C	T	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	20923618	rs7044447	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.749;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr9	20946952	rs7851042	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr9	20948311	rs35470485	A	G	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr9	20953049	rs3206852	A	G	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:81,82:0.50:163
chr9	20976298	rs10119918	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr9	20978306	rs10811445	A	G	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-0.264;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr9	20978312	rs4977616	A	G	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.70;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	20981799	rs72703998	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr9	20982328	rs10964782	T	G	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:56,60:0.52:116
chr9	20982503	rs4304410	T	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	20988426	rs4977881	A	G	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	20993461	rs4497056	T	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr9	21007935	rs7041474	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	21026540	rs2275889	G	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr9	21026800	rs2275890	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr9	21029330	rs2298260	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr9	21077716	rs1051922	G	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr9	21216728	rs3919593	T	C	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:68,75:0.52:143
chr9	21216864	rs28368164	A	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:125,47:0.27:172
chr9	21216908	rs28368163	C	G	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.702;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-14.988;QD=10.67;ReadPosRankSum=-0.619;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:171,72:0.30:243
chr9	21216908	.	CAA	GAG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=1;MGOF=14;MMLQ=28;MQ=51.87;NF=37;NR=41;PP=2944;QD=20;SC=TTCATCAGGGCAATCTCTTCC;SbPval=0.37;Source=Platypus;TC=238;TCF=124;TCR=114;TR=78;WE=21216918;WS=21216898;set=Platypus	GT:AD:AF:DP	0/1:160,78:0.33:238
chr9	21216910	rs28368162	A	G	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.836;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-14.411;QD=10.33;ReadPosRankSum=-1.115;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:174,77:0.31:251
chr9	21216934	rs28368161	G	A	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:179,92:0.34:271
chr9	21217022	rs28368160	C	G	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:106,90:0.46:196
chr9	21239447	rs28383771	G	A	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,64:0.47:137
chr9	21304803	rs10757212	G	A	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:115,98:0.46:213
chr9	21333254	rs41270133	T	C	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:177,171:0.49:348
chr9	21368036	rs35000944	C	G	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:96,117:0.55:213
chr9	21440535	rs1758567	T	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:127,74:0.37:201
chr9	21441116	rs28383796	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:106,97:0.48:203
chr9	21815589	rs4007652	T	TAA	249.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	21968199	rs11515	C	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	21974859	.	C	G	560.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr9	22029445	rs10965215	G	A	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	22452041	rs56665855	GTT	G	714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.049;QD=17.02;ReadPosRankSum=-2.556;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr9	24545513	rs6475797	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr9	24545695	rs2772579	G	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr9	24545957	rs2772578	G	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr9	25677698	rs72631815	A	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr9	25677933	rs35110225	T	C	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:110,103:0.48:213
chr9	25677953	rs34498078	T	C	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	25678122	rs72631814	G	C	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:80,97:0.55:177
chr9	26982270	rs57511456	CT	C	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr9	27009239	rs55784401	C	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-1.556;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:24,30:0.56:54
chr9	27047246	rs10812520	T	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr9	27061142	rs34615635	GGT	G	167.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr9	27062802	.	CA	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=1.125;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr9	27168315	rs10511802	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr9	27168433	rs12349832	A	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,55:0.47:116
chr9	27183463	rs682632	A	C	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr9	27192330	rs2252883	G	A	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr9	27202870	rs639225	A	G	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:122,104:0.46:226
chr9	27203134	rs638203	A	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:83,74:0.47:157
chr9	27205021	rs542913	G	A	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr9	27205235	rs541065	T	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr9	27217516	rs5897224	CTGTT	C	1227.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	27217522	rs5004610	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	27217791	rs1923331	T	TC	1692.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	27217822	rs681754	G	A	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	27217851	rs681707	G	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	27218726	rs667250	C	T	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	27228022	rs2273717	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr9	27289536	rs3739538	A	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.62;ReadPosRankSum=0.023;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr9	27289545	rs3739537	G	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.14;ReadPosRankSum=0.465;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	27289832	rs1980660	G	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr9	27290984	rs2383724	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr9	27291133	rs57396932	G	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr9	27291140	rs59009836	C	CATTT	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr9	27296595	rs7044345	C	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	27297260	rs7875090	A	T	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	27330788	rs142161099	A	AT	435.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	27358958	rs185076212	A	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr9	27455095	rs12379154	G	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr9	27455135	rs34959338	G	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:70,60:0.46:130
chr9	27455584	rs62542376	CG	GA	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr9	27524731	rs700785	A	G	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	27550579	rs118111269	T	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.543;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr9	27560417	rs10967985	G	A	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	27561465	rs3063748	A	ATGT	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	27562352	rs2589050	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	27567145	rs10757668	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr9	28889060	rs7043805	C	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	32384843	rs913762	A	C	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr9	32418237	rs2026739	G	T	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,64:0.51:126
chr9	32427600	rs2375965	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	32472895	rs10813823	A	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	32498291	rs2777725	A	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	32552172	rs35415231	CA	C	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.321;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,33:0.80:41
chr9	32630472	rs10758145	T	C	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:112,108:0.49:220
chr9	32631369	rs10971047	C	T	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr9	32784838	rs1810807	T	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,78:0.60:131
chr9	32973709	rs34659850	CA	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-1.271;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr9	32974372	rs4878522	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	32986032	rs200922655	AAAAAAAAACAAAAAAAAAAAC	A	125.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-1.168;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr9	32986248	rs7869475	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	32988185	rs17226291	C	T	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,70:0.45:154
chr9	32989548	rs3780476	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr9	33001448	rs190368009	G	C	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=0.197;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr9	33001448	.	GC	CA	96	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=8;NR=1;PP=96;QD=16.6075416514;SC=TGAGAGCAGCGCATGAAAGCA;SbPval=0.68;Source=Platypus;TC=33;TCF=29;TCR=4;TR=9;WE=33001457;WS=33001438;set=Platypus	GT:AD:AF:DP	1/0:24,9:0.27:33
chr9	33001449	rs1197774	C	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	33001665	rs79649832	G	A	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=2.510;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:120,125:0.51:245
chr9	33001713	rs17226699	C	G	2176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=0.319;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:107,107:0.50:214
chr9	33001739	rs11788730	C	T	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=1.553;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:86,82:0.49:168
chr9	33026572	rs20583	T	C	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	33026638	rs2274769	G	A	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	33030087	rs10971343	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr9	33030166	rs10971344	A	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr9	33034336	rs3832625	C	CT	1434.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:49,65:0.57:114
chr9	33034480	rs10971352	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr9	33036711	rs10813925	A	G	3825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-1.405;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:139,105:0.43:244
chr9	33036717	rs10813926	C	G	3828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=-1.464;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:137,100:0.42:237
chr9	33039024	rs7296	T	A	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	33047398	rs2274767	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	33048280	rs10971364	A	C	5078.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:272,238:0.47:510
chr9	33053430	rs7041702	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr9	33056299	rs11789823	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-0.412;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr9	33056303	rs11791939	T	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-1.365;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr9	33056378	rs11789863	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.73;ReadPosRankSum=-1.321;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr9	33056971	rs35445781	GA	G	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.182;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr9	33057844	rs2274765	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr9	33060754	rs10971374	T	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr9	33062183	rs199890461	G	GA	1102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.347;QD=6.27;ReadPosRankSum=0.174;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:98,78:0.44:176
chr9	33062197	rs10813929	T	C	2138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.798;QD=10.48;ReadPosRankSum=0.991;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:105,99:0.49:204
chr9	33062291	rs13290323	A	G	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	33104820	.	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.000;QD=3.29;ReadPosRankSum=1.716;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	33113970	rs12379501	C	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr9	33116238	rs34433922	AT	A	716.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.91;ReadPosRankSum=-0.289;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr9	33135085	rs913214	G	A	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:88,124:0.58:212
chr9	33135238	rs1065765	G	A	3395.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:106,152:0.59:258
chr9	33240165	rs555445	G	C	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.208;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:57,56:0.50:113
chr9	33240225	rs706107	G	A	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=1.350;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:63,61:0.49:124
chr9	33255743	rs706117	A	G	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:165,161:0.49:326
chr9	33264540	rs1071545	C	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	33270479	rs844239	A	G	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	33270748	rs831271	G	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	33290532	rs830576	A	G	7255.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	33290688	rs4879682	G	C	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	33344252	rs642157	T	A	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	33354070	rs145934546	TTTTTA	T	1177.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr9	33385600	rs117066088	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.123;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-5.157;QD=2.47;ReadPosRankSum=0.929;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr9	33385602	rs145413647	AC	CT	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.123;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-5.157;QD=2.38;ReadPosRankSum=0.929;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr9	33385690	rs139024279	G	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-7.250;QD=0.50;ReadPosRankSum=-0.679;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:78,7:0.08:85
chr9	33386144	.	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.074;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=19.392;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-7.164;QD=7.07;ReadPosRankSum=-1.989;SOR=3.077;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr9	33386146	rs76608797	C	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.470;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=11.709;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-6.776;QD=6.81;ReadPosRankSum=-2.255;SOR=2.083;set=HC	GT:AD:AF:DP	0/1:62,19:0.23:81
chr9	33386167	rs79172651	G	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:72,40:0.36:112
chr9	33386211	rs80148578	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chr9	33386226	rs78244036	T	C	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.970;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-5.390;QD=9.44;ReadPosRankSum=2.766;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:78,65:0.45:143
chr9	33386243	rs76705820	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr9	33386284	rs73478964	T	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr9	33386378	rs74462413	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=16.209;MLEAC=1;MLEAF=0.500;MQ=55.80;MQRankSum=-4.542;QD=7.64;ReadPosRankSum=0.886;SOR=2.760;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr9	33386387	rs77429065	G	A	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.499;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=21.054;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=-5.294;QD=6.95;ReadPosRankSum=1.337;SOR=3.117;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr9	33386393	rs77837642	G	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.251;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=21.541;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-5.348;QD=6.23;ReadPosRankSum=0.222;SOR=3.110;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr9	33386395	rs2484931	T	C	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	33386399	.	CA	TG	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=24.015;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-5.451;QD=6.05;ReadPosRankSum=-0.689;SOR=3.111;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr9	33386465	rs74668961	A	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-8.858;QD=4.78;ReadPosRankSum=-1.973;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr9	33386469	rs78695486	C	T	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.128;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.370;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-9.188;QD=5.23;ReadPosRankSum=-2.398;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr9	33386510	rs77962308	CA	TG	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;JOINED;set=Intersection	GT:AD:AF:DP	0/1:72,26:0.27:98
chr9	33386526	rs79202054	G	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:61,26:0.30:87
chr9	33395031	rs72707429	G	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=25.649;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-6.042;QD=9.03;ReadPosRankSum=3.669;SOR=4.077;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr9	33395039	rs72707431	C	T	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=32.502;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-6.321;QD=8.16;ReadPosRankSum=3.514;SOR=4.406;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr9	33395196	rs642636	A	G	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	33442952	rs2228332	G	A	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	33442986	rs2231231	A	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	33444000	rs2227285	G	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr9	33447306	rs517210	C	G	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	33447424	rs591810	C	G	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	33447579	rs17553719	T	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr9	33463451	rs72019543	GAGA	G	1318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.421;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.143;QD=16.28;ReadPosRankSum=-0.746;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:45,36:0.44:81
chr9	33465182	rs2785210	G	A	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	33465651	rs560833	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	33466859	rs507758	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr9	33467577	rs2275228	T	C	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:81,70:0.46:151
chr9	33467614	rs501213	T	C	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:91,106:0.54:197
chr9	33467983	rs679644	G	A	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	33468728	rs2777748	T	C	1887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=0.274;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:103,91:0.47:194
chr9	33469191	rs2777747	C	T	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:88,103:0.54:191
chr9	33469406	rs2777746	C	T	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	33471937	rs2992820	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	33473893	rs2777744	T	G	7329.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	33524684	rs3843933	G	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	33524725	rs3843934	G	T	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	33524775	rs7866888	C	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr9	33537063	rs200350609	G	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.619;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=48.92;MQRankSum=0.130;QD=3.24;ReadPosRankSum=0.166;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr9	33548690	rs41313776	G	A	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:153,181:0.54:334
chr9	33558025	rs34748833	T	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr9	33568789	rs10971566	T	G	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr9	33573160	rs1807130	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	33573377	rs597219	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	33617691	rs147881110	TGGATGTAACACG	T	1403.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	33618028	rs855511	A	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	33618358	rs855512	A	G	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	33618460	rs966447	A	T	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	33618497	rs2380835	G	A	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	33625185	rs36079164	C	T	8866.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr9	33662181	.	TCTGTAGCCCCAA	TTGTAGCCCCAA,T	1614.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=90;set=Intersection	GT:AF:DP	0/1:0.48:90
chr9	33662183	.	TGTAGCCCCAAC	T	1584.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=1.885;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:61,43:0.41:104
chr9	33662194	.	C	T	2716	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=29;NR=10;PP=2716;QD=20;SC=GTAGCCCCAACTGTGCCATGA;SbPval=0.21;Source=Platypus;TC=97;TCF=79;TCR=18;TR=39;WE=33662202;WS=33662171;set=Platypus	GT:AD:AF:DP	0/1:58,39:0.40:97
chr9	33662389	rs1832325	A	G	3958.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:170,179:0.51:349
chr9	33675629	rs7849845	A	C	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:116,118:0.50:234
chr9	33676094	rs7853346	C	G	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:81,74:0.48:155
chr9	33750453	rs113217588	A	ACACAG	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr9	33750748	rs10971678	G	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr9	33794631	.	G	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-4.816;QD=1.27;ReadPosRankSum=-0.496;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:22,3:0.12:25
chr9	33794632	.	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-4.816;QD=1.27;ReadPosRankSum=-0.496;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:22,3:0.12:25
chr9	33794667	rs369375802	C	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:44,10:0.19:54
chr9	33794707	.	TG	CA	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.750;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-8.658;QD=3.44;ReadPosRankSum=3.237;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:72,13:0.15:85
chr9	33794717	.	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-9.225;QD=3.35;ReadPosRankSum=3.611;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:74,13:0.15:87
chr9	33794726	.	GC	CA	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.169;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-9.595;QD=4.01;ReadPosRankSum=3.140;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:80,14:0.15:94
chr9	33794736	.	A	G	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-10.350;QD=6.18;ReadPosRankSum=-0.374;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:88,22:0.20:110
chr9	33794749	.	C	A	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=5.011;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-10.841;QD=6.17;ReadPosRankSum=-1.687;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:111,31:0.22:142
chr9	33794753	.	A	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=2.630;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-11.016;QD=6.32;ReadPosRankSum=-1.810;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:114,32:0.22:146
chr9	33794759	.	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-9.775;QD=1.91;ReadPosRankSum=-0.821;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:138,31:0.18:169
chr9	33794789	.	G	A	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-7.181;QD=2.76;ReadPosRankSum=-2.052;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:199,30:0.13:229
chr9	33794797	.	TGA	T	1602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=-8.559;QD=7.32;ReadPosRankSum=-0.832;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:167,52:0.24:219
chr9	33794809	rs201061108	G	A	3655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=-13.965;QD=15.17;ReadPosRankSum=-0.199;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:145,96:0.40:241
chr9	33794811	.	GG	AT	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=6.229;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-8.836;QD=4.27;ReadPosRankSum=-1.748;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:201,43:0.18:244
chr9	33794840	rs10117993	G	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-8.722;QD=2.54;ReadPosRankSum=-1.470;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:231,67:0.22:298
chr9	33794877	.	C	T	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.556;ClippingRankSum=0.000;DP=338;ExcessHet=3.0103;FS=4.391;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-10.384;QD=2.61;ReadPosRankSum=2.654;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:253,77:0.23:330
chr9	33794890	.	T	A	2487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DP=312;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-10.865;QD=7.97;ReadPosRankSum=3.009;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:230,82:0.26:312
chr9	33794894	.	T	C	3906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=6.116;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-13.150;QD=12.98;ReadPosRankSum=-2.185;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:174,127:0.42:301
chr9	33794906	.	TTGAAACA	T	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=50.704;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-4.252;QD=2.45;ReadPosRankSum=-0.751;SOR=4.305;set=HC	GT:AD:AF:DP	0/1:215,31:0.13:246
chr9	33794915	.	TTCC	T	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.559;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=47.367;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-4.415;QD=3.11;ReadPosRankSum=-1.324;SOR=4.184;set=HC	GT:AD:AF:DP	0/1:191,31:0.14:222
chr9	33794923	.	CTT	C	3082.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	0/1:107,82:0.43:189
chr9	33794926	.	T	C	608.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.873;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=36.978;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-3.422;QD=3.22;ReadPosRankSum=-2.183;SOR=3.802;set=HC	GT:AD:AF:DP	0/1:162,27:0.14:189
chr9	33794927	.	T	C	1791.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=182;set=Intersection	GT:AD:AF:DP	0/1:129,53:0.29:182
chr9	33794929	.	A	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.572;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=29.240;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-3.200;QD=3.12;ReadPosRankSum=-2.265;SOR=3.447;set=HC	GT:AD:AF:DP	0/1:151,24:0.14:175
chr9	33794933	.	T	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=24.320;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-3.053;QD=2.86;ReadPosRankSum=-2.166;SOR=3.284;set=HC	GT:AD:AF:DP	0/1:148,22:0.13:170
chr9	33794942	.	A	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=17.422;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-3.145;QD=1.84;ReadPosRankSum=-1.645;SOR=2.802;set=HC	GT:AD:AF:DP	0/1:142,18:0.11:160
chr9	33794955	.	G	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.619;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=10.926;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-3.208;QD=1.00;ReadPosRankSum=-1.905;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:123,14:0.10:137
chr9	33794956	.	G	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.465;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=8.843;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-2.801;QD=1.05;ReadPosRankSum=-1.555;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:123,13:0.10:136
chr9	33794965	.	A	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.841;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-2.672;QD=1.26;ReadPosRankSum=-3.085;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:97,11:0.10:108
chr9	33794975	.	A	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-7.239;QD=3.30;ReadPosRankSum=-1.981;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr9	33794981	.	A	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-8.168;QD=4.49;ReadPosRankSum=-3.308;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr9	33795415	.	G	A	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=10.713;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-8.297;QD=5.12;ReadPosRankSum=3.521;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:82,19:0.19:101
chr9	33795417	rs373360400	AGCCGAG	A	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=7.904;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-8.905;QD=4.10;ReadPosRankSum=3.400;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:96,19:0.17:115
chr9	33795437	rs372175402	C	A	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=7.921;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-9.432;QD=3.38;ReadPosRankSum=2.122;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:109,19:0.15:128
chr9	33795439	.	G	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.814;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=7.318;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-9.511;QD=3.26;ReadPosRankSum=1.922;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:111,19:0.15:130
chr9	33795441	.	C	G	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=7.396;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-9.550;QD=3.21;ReadPosRankSum=1.684;SOR=0.222;set=HC	GT:AD:AF:DP	0/1:114,19:0.14:133
chr9	33795583	.	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DP=448;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-21.052;QD=0.46;ReadPosRankSum=-4.748;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:414,31:0.07:445
chr9	33795593	rs201140357	G	A	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=3.223;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-21.913;QD=1.66;ReadPosRankSum=-5.332;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:434,49:0.10:483
chr9	33795601	.	G	T	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DP=520;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-22.638;QD=3.35;ReadPosRankSum=-6.131;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:448,69:0.13:517
chr9	33795603	.	G	C	2209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DP=533;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-22.912;QD=4.17;ReadPosRankSum=-6.222;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:455,75:0.14:530
chr9	33795613	.	C	T	2776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DP=591;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-23.804;QD=4.72;ReadPosRankSum=-5.498;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:486,102:0.17:588
chr9	33795622	.	T	C	3064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DP=619;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-24.127;QD=4.97;ReadPosRankSum=-2.944;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:507,110:0.18:617
chr9	33795624	.	A	C	3167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DP=618;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-24.046;QD=5.14;ReadPosRankSum=-2.434;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:505,111:0.18:616
chr9	33795638	.	C	T	3921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DP=672;ExcessHet=3.0103;FS=5.401;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-24.713;QD=5.85;ReadPosRankSum=0.978;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:538,132:0.20:670
chr9	33795640	.	ACCC	A	3921.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DP=680;ExcessHet=3.0103;FS=5.429;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-24.871;QD=5.78;ReadPosRankSum=1.609;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:545,133:0.20:678
chr9	33795646	.	C	CAA	4132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DP=684;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-24.953;QD=6.06;ReadPosRankSum=2.371;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:547,135:0.20:682
chr9	33795652	.	T	C	4178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DP=680;ExcessHet=3.0103;FS=5.361;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-24.683;QD=6.15;ReadPosRankSum=3.776;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:537,142:0.21:679
chr9	33795703	rs370216620	C	T	4699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=8.307;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-21.348;QD=9.38;ReadPosRankSum=-0.609;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:359,142:0.28:501
chr9	33795707	rs373461727	C	G	4600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=8.370;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-20.827;QD=9.63;ReadPosRankSum=-0.678;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:344,134:0.28:478
chr9	33795731	.	A	G	3874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=9.239;MLEAC=1;MLEAF=0.500;MQ=56.09;MQRankSum=-18.378;QD=10.47;ReadPosRankSum=-2.130;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:262,108:0.29:370
chr9	33795735	.	A	T	3727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=13.097;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-17.933;QD=10.56;ReadPosRankSum=-2.105;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:251,102:0.29:353
chr9	33795739	.	C	T	3319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DP=346;ExcessHet=3.0103;FS=10.192;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-17.212;QD=9.62;ReadPosRankSum=-1.617;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:248,97:0.28:345
chr9	33795762	.	C	T	1455.77	.	AC=1;AF=0.500;AN=2;DP=215;set=Intersection	GT:AD:AF:DP	0/1:157,57:0.27:214
chr9	33795775	.	C	T	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-10.933;QD=7.03;ReadPosRankSum=1.309;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:129,39:0.23:168
chr9	33796672	rs77765166	TG	CA	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.752;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-6.655;QD=2.44;ReadPosRankSum=-1.628;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:202,29:0.13:231
chr9	33796734	.	C	A	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.619;ClippingRankSum=0.000;DP=409;ExcessHet=3.0103;FS=14.093;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-14.920;QD=2.69;ReadPosRankSum=-4.945;SOR=1.940;set=HC	GT:AD:AF:DP	0/1:351,58:0.14:409
chr9	33796777	rs368576294	A	G	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.906;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=9.569;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-16.269;QD=5.43;ReadPosRankSum=4.306;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:345,89:0.21:434
chr9	33796785	rs199600414	C	G	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=25.291;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-12.114;QD=3.49;ReadPosRankSum=4.789;SOR=1.521;set=HC	GT:AD:AF:DP	0/1:334,66:0.17:400
chr9	33796799	rs200709040	A	T	3346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=17.925;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-15.658;QD=9.37;ReadPosRankSum=2.006;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:246,111:0.31:357
chr9	33796802	.	TAAGTG	T	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=364;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-7.268;QD=0.59;ReadPosRankSum=-2.728;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:328,30:0.08:358
chr9	33796811	rs200466488	G	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=3.901;MLEAC=1;MLEAF=0.500;MQ=55.33;MQRankSum=-7.225;QD=0.80;ReadPosRankSum=-2.093;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:313,25:0.07:338
chr9	33796827	rs375097863	G	A	1653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=5.774;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-12.412;QD=5.57;ReadPosRankSum=1.304;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:197,100:0.34:297
chr9	33796858	rs369633136	C	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:144,74:0.34:218
chr9	33796889	.	A	G	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.738;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=14.664;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=-8.137;QD=8.88;ReadPosRankSum=2.262;SOR=2.547;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr9	33796896	.	T	C	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.734;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=12.241;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-7.512;QD=10.27;ReadPosRankSum=1.796;SOR=2.563;set=HC	GT:AD:AF:DP	0/1:73,33:0.31:106
chr9	33796898	.	G	A	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.874;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=9.992;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-7.223;QD=10.84;ReadPosRankSum=2.124;SOR=2.332;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr9	33796904	.	G	A	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-6.362;QD=10.92;ReadPosRankSum=2.952;SOR=2.667;set=HC	GT:AD:AF:DP	0/1:65,26:0.29:91
chr9	33797861	rs151192741	A	G	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:250,105:0.30:355
chr9	33797881	rs372122039	G	A	6224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=55.25;MQRankSum=-22.116;QD=12.13;ReadPosRankSum=-6.688;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:347,166:0.32:513
chr9	33797896	rs113220686	G	A	8122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.342;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-24.649;QD=12.42;ReadPosRankSum=-5.920;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:437,217:0.33:654
chr9	33797917	.	T	C	15735.77	.	AC=1;AF=0.500;AN=2;DP=938;set=Intersection	GT:AD:AF:DP	0/1:539,393:0.42:932
chr9	33797928	.	G	GCC	14959.73	.	AC=1;AF=0.500;AN=2;DP=1081;set=Intersection	GT:AD:AF:DP	0/1:587,489:0.45:1076
chr9	33797930	.	GAC	G	21778.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.378;ClippingRankSum=0.000;DP=1131;ExcessHet=3.0103;FS=3.221;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-26.200;QD=19.34;ReadPosRankSum=-3.460;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:607,519:0.46:1126
chr9	33797951	rs150316320	A	C	28346.77	.	AC=1;AF=0.500;AN=2;DB;DP=1365;set=Intersection	GT:AD:AF:DP	0/1:659,701:0.52:1360
chr9	33797962	rs374178684	A	G	31924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.522;ClippingRankSum=0.000;DB;DP=1487;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=-26.070;QD=21.59;ReadPosRankSum=0.826;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:675,804:0.54:1479
chr9	33797969	rs149664918	T	A	12027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=1523;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=55.68;MQRankSum=-10.449;QD=7.94;ReadPosRankSum=-1.974;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:1155,360:0.24:1515
chr9	33797978	rs145485932	G	A	12993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DB;DP=1566;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-9.102;QD=8.34;ReadPosRankSum=2.377;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:1165,393:0.25:1558
chr9	33797987	rs137945391	G	T	18321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.665;ClippingRankSum=0.000;DB;DP=1572;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-17.864;QD=11.72;ReadPosRankSum=-1.335;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:1057,506:0.32:1563
chr9	33797991	rs146966861	GC	AT	14168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=1561;ExcessHet=3.0103;FS=2.004;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-7.910;QD=9.13;ReadPosRankSum=7.873;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:1133,419:0.27:1552
chr9	33797999	rs142141488	A	G	18219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DB;DP=1567;ExcessHet=3.0103;FS=3.487;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-17.600;QD=11.68;ReadPosRankSum=-3.698;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:1054,506:0.32:1560
chr9	33798016	.	C	T	15100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DP=1420;ExcessHet=3.0103;FS=4.564;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-14.914;QD=10.67;ReadPosRankSum=-2.681;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:992,423:0.30:1415
chr9	33798017	rs855581	A	G	28618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.672;ClippingRankSum=0.000;DB;DP=1389;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=7.259;QD=20.69;ReadPosRankSum=-7.131;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:468,915:0.66:1383
chr9	33798037	.	T	C	10365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DP=1231;ExcessHet=3.0103;FS=6.108;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-8.475;QD=8.45;ReadPosRankSum=1.873;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:918,308:0.25:1226
chr9	33798042	rs141382822	G	C	9667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DB;DP=1183;ExcessHet=3.0103;FS=7.409;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-6.922;QD=8.21;ReadPosRankSum=1.693;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:885,293:0.25:1178
chr9	33798052	rs377380263	C	T	9224.77	.	AC=1;AF=0.500;AN=2;DB;DP=1059;set=Intersection	GT:AD:AF:DP	0/1:591,462:0.44:1053
chr9	33798073	.	C	T	19653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.787;ClippingRankSum=0.000;DP=741;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-10.847;QD=26.70;ReadPosRankSum=0.287;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:248,488:0.66:736
chr9	33798075	.	T	C	19514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.876;ClippingRankSum=0.000;DP=712;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-10.874;QD=27.60;ReadPosRankSum=0.774;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:243,464:0.66:707
chr9	33798079	rs144845866	T	C	9249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-8.142;QD=13.99;ReadPosRankSum=-1.741;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:249,412:0.62:661
chr9	33798112	.	C	T	6354.77	.	AC=1;AF=0.500;AN=2;DP=327;set=Intersection	GT:AD:AF:DP	0/1:118,207:0.64:325
chr9	33798574	rs201773718	G	A	2464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.133;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=8.770;MLEAC=1;MLEAF=0.500;MQ=56.72;MQRankSum=-15.914;QD=9.06;ReadPosRankSum=-1.003;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:199,73:0.27:272
chr9	33798596	rs377148991	T	C	2691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-14.799;QD=8.83;ReadPosRankSum=-0.104;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:209,96:0.31:305
chr9	33798916	.	C	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-4.303;QD=12.61;ReadPosRankSum=-0.302;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr9	33798960	rs72711744	C	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr9	33798998	rs373120184	T	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr9	33799010	.	C	T	1338.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:74,38:0.34:112
chr9	33799026	rs148495550	C	G	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=8.298;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-10.161;QD=8.41;ReadPosRankSum=1.610;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:97,34:0.26:131
chr9	33799043	rs142813493	T	A	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.682;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=4.246;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-10.892;QD=6.72;ReadPosRankSum=-0.917;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:116,33:0.22:149
chr9	33799055	.	CG	TA	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=4.410;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-12.333;QD=5.13;ReadPosRankSum=-1.874;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:128,27:0.17:155
chr9	33799071	rs147767884	G	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=8.443;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-12.805;QD=2.71;ReadPosRankSum=-2.783;SOR=0.221;set=HC	GT:AD:AF:DP	0/1:145,21:0.13:166
chr9	33799086	rs150624305	C	T	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.617;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=4.783;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-13.421;QD=2.39;ReadPosRankSum=-4.056;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:162,20:0.11:182
chr9	33799093	.	GT	G	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.406;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-13.717;QD=2.02;ReadPosRankSum=-4.345;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:169,21:0.11:190
chr9	33799098	.	TG	CA	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.343;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-14.253;QD=1.93;ReadPosRankSum=-3.368;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:183,22:0.11:205
chr9	33799103	.	G	A	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-13.347;QD=1.44;ReadPosRankSum=-2.793;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:190,22:0.10:212
chr9	33799163	rs376841271	C	A	2384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=19.841;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-16.195;QD=7.64;ReadPosRankSum=-0.612;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:240,72:0.23:312
chr9	33799181	.	C	T	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=4.218;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-11.060;QD=5.28;ReadPosRankSum=-1.055;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:251,57:0.19:308
chr9	33799185	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.727;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=31.449;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-9.612;QD=0.40;ReadPosRankSum=0.067;SOR=2.647;set=HC	GT:AD:AF:DP	0/1:280,26:0.08:306
chr9	33799186	.	G	A	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-10.819;QD=5.47;ReadPosRankSum=-1.526;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:244,59:0.19:303
chr9	33799218	.	G	A	2906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.942;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=16.035;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-14.157;QD=11.05;ReadPosRankSum=0.034;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:176,87:0.33:263
chr9	33799224	.	C	G	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-7.167;QD=4.68;ReadPosRankSum=0.883;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:190,45:0.19:235
chr9	33799230	.	C	CTG	2834.73	.	AC=1;AF=0.500;AN=2;DP=225;set=Intersection	GT:AD:AF:DP	0/1:147,77:0.34:224
chr9	33799245	.	G	T	2684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.238;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=11.503;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-12.031;QD=13.49;ReadPosRankSum=3.614;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:126,73:0.37:199
chr9	33799246	.	G	C	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.741;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=14.607;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-9.104;QD=4.78;ReadPosRankSum=1.427;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:160,35:0.18:195
chr9	33799251	.	C	T	2717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=12.198;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-11.436;QD=14.53;ReadPosRankSum=3.409;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:114,73:0.39:187
chr9	33799263	.	C	T	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.473;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-5.358;QD=7.00;ReadPosRankSum=1.805;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:130,39:0.23:169
chr9	33799267	.	C	T	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.474;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=6.830;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-7.797;QD=5.35;ReadPosRankSum=2.806;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:130,31:0.19:161
chr9	33799285	rs369146161	T	C	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=10.145;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-7.459;QD=7.31;ReadPosRankSum=1.456;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:97,30:0.24:127
chr9	33799304	.	G	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=6.772;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-6.400;QD=8.52;ReadPosRankSum=0.545;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:74,24:0.24:98
chr9	33912102	rs71845301	G	GT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=4.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=0.528;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:111,23:0.17:134
chr9	33927899	rs307692	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	33935736	rs307652	A	G	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:103,84:0.45:187
chr9	33938793	rs61353103	CA	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=0.624;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr9	33943508	.	C	A	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.692;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:138,40:0.22:178
chr9	33948652	rs307654	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr9	33952629	rs16935299	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=0.812;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr9	33960778	.	C	CA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.893;QD=0.92;ReadPosRankSum=1.660;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:109,29:0.21:138
chr9	33969352	rs307675	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chr9	33971740	rs3739690	A	G	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:167,143:0.46:310
chr9	34011803	rs7029112	C	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	34011835	rs7029122	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	34017015	rs11432780	G	GA	1219.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.202;QD=13.40;ReadPosRankSum=0.931;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:16,75:0.82:91
chr9	34017106	rs1785506	C	T	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	34088561	rs41316005	G	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.91;ReadPosRankSum=0.150;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr9	34096597	rs7857551	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr9	34107505	rs11557154	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr9	34211942	rs1556439	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr9	34255267	rs35693912	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr9	34286486	rs6476442	G	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr9	34306410	rs17350674	C	A	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:116,88:0.43:204
chr9	34310927	rs10972048	T	C	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:144,173:0.55:317
chr9	34370701	rs58832809	TG	T	675.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr9	34372783	rs4879781	G	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	34372873	rs4879782	C	G	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-0.570;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:37,44:0.54:81
chr9	34381192	rs3753033	C	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr9	34382726	rs3808876	A	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr9	34397545	rs11790577	A	G	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	34402173	rs10738926	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	34406801	rs34985382	CT	C	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.674;QD=7.74;ReadPosRankSum=-1.070;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr9	34552437	rs2274592	C	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	34569010	rs9695558	T	A	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	34615896	rs144108229	C	CA	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.539;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.975;QD=8.57;ReadPosRankSum=1.380;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:18,34:0.65:52
chr9	34627940	rs13283357	C	T	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	34635598	rs4879809	T	C	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	34650279	.	C	CAAAAAAAA	565.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=56.57;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	34655436	rs2812357	T	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	34655734	rs11575576	G	T	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	34657663	rs1104748	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	34710084	rs11574915	A	C	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr9	34723988	rs147591106	C	A	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.39;MQRankSum=-2.343;QD=7.46;ReadPosRankSum=-0.170;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:38,23:0.38:61
chr9	34724007	.	C	T	786.77	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr9	34725116	rs62547038	G	A	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:90,79:0.47:169
chr9	34725742	rs62547039	T	C	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:144,125:0.46:269
chr9	34726182	rs521630	A	G	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:96,78:0.45:174
chr9	34726418	rs2937382	T	C	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.979;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.526;MLEAC=1;MLEAF=0.500;MQ=51.06;MQRankSum=-8.476;QD=3.98;ReadPosRankSum=0.399;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:116,34:0.23:150
chr9	34726524	rs1810820	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr9	34726671	rs1854574	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr9	34834880	rs112468216	A	C	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:121,46:0.28:167
chr9	34835861	rs924566	C	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr9	34836905	rs3802426	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr9	34989656	.	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.780;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr9	35043291	rs615474	G	T	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:129,94:0.42:223
chr9	35060302	rs684562	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr9	35060746	rs562381	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr9	35060955	rs2258240	T	C	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr9	35061693	rs11272867	G	GACAGTACACAA	1642.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr9	35062972	rs514492	C	T	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.809;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:75,51:0.40:126
chr9	35066579	rs35504855	T	TA	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.37;MQRankSum=1.158;QD=9.26;ReadPosRankSum=-0.220;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr9	35074917	rs587118	T	C	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=1.634;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:68,69:0.50:137
chr9	35077441	rs554098	T	C	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-0.992;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:49,48:0.49:97
chr9	35079361	rs504082	G	T	4079.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:206,196:0.49:402
chr9	35089048	rs556766	A	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	35090782	rs505297	A	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr9	35093020	rs568300	T	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr9	35100002	rs664357	T	C	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	35100569	rs586017	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr9	35101383	rs34240345	GCA	G	1912.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr9	35101870	rs693325	C	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr9	35107765	rs13287211	C	A	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:151,119:0.44:270
chr9	35107858	rs7039828	C	T	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	35295984	rs661712	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	35382559	rs199694785	AT	A	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.580;QD=1.23;ReadPosRankSum=0.371;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr9	35546735	rs1535422	A	G	8962.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	35555823	rs946483	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	35556250	rs870978	G	C	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	35556527	rs150786704	A	ACCTCTAAGTGCTGGCTGGGC	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	35559369	rs4879906	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr9	35559905	rs12338773	T	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	35561912	.	CCCCACCCT	C	981	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=4;HapScore=1;MGOF=9;MMLQ=23;MQ=60.0;NF=0;NR=4;PP=981;QD=249.0;SC=CTTTGTGTTCCCCCACCCTCC;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=35561927;WS=35561902;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	35562328	rs5897609	TACAA	T	2178.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=43.57;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	35562549	rs755774	G	A	5582.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	35606699	.	T	TG	37	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=8;HapScore=2;MGOF=6;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=37;QD=18.0;SC=AGAACATGGATGGGGGGGGTC;SbPval=1.0;Source=Platypus;TC=6;TCF=4;TCR=2;TR=3;WE=35606707;WS=35606689;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr9	35606738	rs7028425	C	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=-0.754;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr9	35606884	rs2275422	G	A	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.262;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:25,51:0.67:76
chr9	35610523	rs71940749	CCCCTGCTCTGAGT	C	731.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr9	35610912	rs4879913	A	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr9	35616583	rs2095858	A	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr9	35650458	rs2297880	G	A	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	35660990	rs1339374	A	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	35661243	rs35234337	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr9	35662251	rs2297879	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:71,77:0.52:148
chr9	35663228	rs10814266	G	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr9	35664624	rs1361338	C	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr9	35674053	rs2071676	G	A	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:118,124:0.51:242
chr9	35677702	rs2857801	T	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	35679061	rs2857802	C	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr9	35682296	rs11998	T	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr9	35683240	rs149115565	T	TG	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.401;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:84,25:0.23:109
chr9	35684822	rs3215700	C	CG	721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=15.654;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.202;QD=8.39;ReadPosRankSum=-2.036;SOR=2.345;set=HC	GT:AD:AF:DP	0/1:50,36:0.42:86
chr9	35689373	rs2145925	T	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr9	35689949	rs3793538	AAA	TTT	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.550;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=1.604;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr9	35698942	rs41298202	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:75,52:0.41:127
chr9	35700150	rs2295794	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:125,106:0.46:231
chr9	35704179	rs62545554	A	C	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr9	35704898	rs3215701	GA	G	369.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr9	35705759	rs11541908	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:102,114:0.53:216
chr9	35707338	rs55810625	G	A	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:83,76:0.48:159
chr9	35711806	rs2249250	G	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr9	35712003	rs2295795	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr9	35712823	rs2249133	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr9	35713181	rs877365	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.922;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:31,30:0.49:61
chr9	35722282	rs2295797	T	C	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:36,53:0.60:89
chr9	35724448	rs41277065	G	A	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,67:0.49:136
chr9	35739115	rs3833700	G	GC	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr9	35749845	rs2236288	G	C	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=0.701;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:36,40:0.53:76
chr9	35751221	rs1570248	C	T	2165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.709;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:111,103:0.48:214
chr9	35752274	rs35406278	GT	G	105.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr9	35753898	rs34478611	G	A	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr9	35792423	rs2228580	T	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr9	35801233	rs1322044	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr9	35801856	rs7034957	C	A	3823.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:221,190:0.46:411
chr9	35802092	rs2890702	G	C	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr9	35802583	rs5812	C	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:126,88:0.41:214
chr9	35807401	rs112946422	AGCTGGGGCC	A	1650.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chr9	35807542	rs13294264	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr9	35810210	rs201151445	G	A	3491.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:162,168:0.51:330
chr9	35811228	rs41277075	T	C	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:64,69:0.52:133
chr9	35811485	rs141090907	ACCAGGACCAGAG	A	2085.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr9	35826038	rs13294245	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr9	35826058	rs13294256	T	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr9	35829390	rs2381409	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr9	35841071	rs2236292	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr9	35842301	rs2236294	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,43:0.37:117
chr9	35845929	rs7848557	A	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr9	35852670	rs12346647	T	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr9	35870001	rs7044405	T	C	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	35906471	rs76452347	C	T	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:141,157:0.53:298
chr9	35906596	.	C	CCCCCACCA	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=9.03;ReadPosRankSum=2.381;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr9	35906601	.	C	CCTCACCACCTCCACCACCACCACCACCACCA	1271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=16.52;ReadPosRankSum=1.624;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:40,37:0.48:77
chr9	36058802	.	CT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.474;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr9	36063743	rs942478	C	G	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	36148722	rs3739613	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr9	36151048	rs75594151	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr9	36170290	rs113985677	G	A	3072.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:106,139:0.57:245
chr9	36209082	rs62541769	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr9	36276857	rs7875447	A	G	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=3.106;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:66,46:0.41:112
chr9	36369646	rs34904529	CA	C	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.838;QD=6.32;ReadPosRankSum=-0.662;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:35,33:0.49:68
chr9	36372737	rs12001805	C	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr9	36378853	rs12379930	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr9	36581778	rs201459615	A	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=0.257;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr9	36669228	rs3780133	C	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	36674842	rs2274473	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	36840623	rs3780135	G	A	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	36864119	rs4289895	A	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	36882264	.	T	TAC	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=0.926;SOR=2.115;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr9	37020622	rs2297105	A	C	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr9	37302155	rs10814518	C	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	37304168	rs11422051	A	AT	2578.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:8,118:0.94:126
chr9	37305609	rs137880533	C	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr9	37305829	rs3837244	GATAT	G	2287.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	37305852	rs3780333	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr9	37426524	rs2736664	C	T	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	37429661	rs309459	A	G	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	37429814	rs309458	A	G	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	37432264	rs309455	T	C	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	37441808	rs309450	A	G	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	37486603	rs1571234	A	G	12308.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr9	37486916	rs913278	G	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	37489232	.	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.268;QD=3.06;ReadPosRankSum=0.527;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr9	37489378	rs11542231	C	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:110,104:0.49:214
chr9	37503124	rs7047823	G	A	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	37536998	rs927930	C	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	37537557	rs7044153	G	A	5575.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	37692654	rs3747539	A	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	37715574	rs1952126	G	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	37715724	rs1952125	T	G	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	37724195	rs10814609	A	G	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	37729786	rs1359590	C	T	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	37732142	rs7035345	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr9	37737283	rs2296552	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr9	37740637	rs2281872	T	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:61,36:0.37:97
chr9	37745413	rs3747541	G	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:123,79:0.39:202
chr9	37769811	rs10973531	T	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	37777664	.	C	T	1993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.097;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:75,96:0.56:171
chr9	37887570	.	T	TA	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=6.448;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.000;QD=5.07;ReadPosRankSum=1.432;SOR=1.692;set=HC	GT:AD:AF:DP	0/1:41,38:0.48:79
chr9	37948724	rs3827519	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr9	37974743	rs1138374	T	C	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=1.876;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:55,63:0.53:118
chr9	38015327	rs2183130	C	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr9	38015646	rs7047952	C	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	38016247	rs7037371	T	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr9	38068532	rs3750444	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	38395940	rs2228094	T	C	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,205:1.00:206
chr9	38396502	rs4878199	G	A	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	38411345	rs12377125	A	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr9	38413159	rs7018644	T	G	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.110;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr9	38414022	rs72447808	CCT	C	1832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.202;QD=14.10;ReadPosRankSum=0.816;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:76,54:0.42:130
chr9	38414030	rs5897733	T	TCACA,TCTCACA	4688.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=141;set=Intersection	GT:AF:DP	1/2:0.52,0.47:117
chr9	38414067	rs12375529	G	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:128,100:0.44:228
chr9	38423826	rs7039990	T	A	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	38424344	rs35134904	A	G	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr9	38571976	rs140529454	T	TTAAA	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	38615798	.	T	C	847.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr9	39133168	rs6476772	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr9	40503085	rs139489532	A	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.54;QD=26.28;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	40503105	rs201003096	G	C	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.50;QD=29.79;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	40784183	rs4339693	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	43816630	.	C	CT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=7.983;MLEAC=1;MLEAF=0.500;MQ=39.04;MQRankSum=-2.587;QD=2.94;ReadPosRankSum=-3.127;SOR=2.876;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr9	43816656	rs199925161	T	C	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.34;QD=31.59;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	43818062	rs78142446	T	A	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:104,79:0.43:183
chr9	43860959	rs145957320	G	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr9	43861081	rs62536501	T	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr9	65602551	rs11265643	C	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-1.140;QD=5.68;ReadPosRankSum=2.220;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr9	66457014	.	C	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=53.81;MQRankSum=-4.455;QD=5.45;ReadPosRankSum=0.626;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr9	66457016	rs10436128	C	T	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=53.96;MQRankSum=0.520;QD=4.30;ReadPosRankSum=-0.934;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr9	66457019	rs7040398	G	A	2520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=54.43;MQRankSum=-5.498;QD=27.11;ReadPosRankSum=0.440;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:34,59:0.63:93
chr9	66457027	rs76122331	T	A	2801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-6.202;QD=25.02;ReadPosRankSum=-0.149;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:40,72:0.64:112
chr9	66457030	.	T	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-2.360;QD=4.63;ReadPosRankSum=1.714;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:97,21:0.18:118
chr9	66457040	.	C	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-0.869;QD=5.03;ReadPosRankSum=-0.352;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:104,23:0.18:127
chr9	66457051	rs79307166	G	C	3877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-7.204;QD=27.90;ReadPosRankSum=-1.720;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:42,97:0.70:139
chr9	66457052	.	G	A	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=2.628;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-4.372;QD=5.35;ReadPosRankSum=-1.238;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:104,32:0.24:136
chr9	66457075	.	C	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-4.990;QD=0.63;ReadPosRankSum=2.621;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:205,17:0.08:222
chr9	66457076	rs76994164	T	C	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:109,113:0.51:222
chr9	66457078	.	C	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-5.228;QD=0.83;ReadPosRankSum=2.058;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:132,13:0.09:145
chr9	66457106	rs200733760	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:142,27:0.16:169
chr9	66457110	.	C	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-0.036;QD=2.89;ReadPosRankSum=2.215;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:139,22:0.14:161
chr9	66457112	rs113087405	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-0.016;QD=3.94;ReadPosRankSum=2.229;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:140,27:0.16:167
chr9	66457126	.	TGC	T	671.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=0.468;QD=3.86;ReadPosRankSum=1.281;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:147,27:0.16:174
chr9	66457127	rs73447819	G	A	905.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:130,42:0.24:172
chr9	66457129	.	A	ATG	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=0.674;QD=3.82;ReadPosRankSum=1.259;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:150,28:0.16:178
chr9	66457151	rs78939328	G	C	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-4.247;QD=11.21;ReadPosRankSum=0.085;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:100,52:0.34:152
chr9	66457169	rs138400587	AGAG	A	1161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-0.594;QD=9.52;ReadPosRankSum=0.792;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:87,35:0.29:122
chr9	66457173	.	GGA	G	1051.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-4.832;QD=9.48;ReadPosRankSum=1.172;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:78,33:0.30:111
chr9	66457178	.	G	C	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-4.896;QD=7.31;ReadPosRankSum=2.590;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr9	66457184	.	G	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=55.24;MQRankSum=-0.989;QD=5.42;ReadPosRankSum=-1.636;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr9	66457189	rs2874584	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.055;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-0.331;QD=3.19;ReadPosRankSum=-0.150;SOR=1.405;set=HC	GT:AD:AF:DP	0/1:88,15:0.15:103
chr9	66457192	.	TAGAGAGAG	TAG,T	550.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=114;set=Intersection	GT:AF:DP	0/1:0.17:108
chr9	66457193	.	A	T	459.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.554;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=6.528;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-0.113;QD=4.60;ReadPosRankSum=0.859;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:88,12:0.12:100
chr9	66457196	.	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=4.355;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-0.187;QD=2.55;ReadPosRankSum=0.343;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:86,13:0.13:99
chr9	66457200	.	G	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.901;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=4.188;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=0.086;QD=2.41;ReadPosRankSum=0.397;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:87,13:0.13:100
chr9	66457204	.	G	C	655.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.500;MQ=54.97;MQRankSum=-4.702;QD=6.83;ReadPosRankSum=4.034;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr9	66457205	.	A	AAGGGGGGAG	222.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.597;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.500;MQ=54.75;MQRankSum=0.443;QD=2.21;ReadPosRankSum=1.133;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:89,12:0.12:101
chr9	66457209	.	AG	A	759.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=5.894;MLEAC=1;MLEAF=0.500;MQ=52.72;MQRankSum=-2.954;QD=6.44;ReadPosRankSum=3.307;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:92,26:0.22:118
chr9	66457211	.	ACAGAAAAG	A	779.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=4.655;MLEAC=1;MLEAF=0.500;MQ=53.29;MQRankSum=-3.257;QD=7.88;ReadPosRankSum=3.431;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:75,24:0.24:99
chr9	66457216	rs150998016	A	G	1488.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=52.99;MQRankSum=-0.734;QD=16.36;ReadPosRankSum=-3.067;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:51,40:0.44:91
chr9	66457228	.	A	C	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=6.325;MLEAC=1;MLEAF=0.500;MQ=52.04;MQRankSum=-2.410;QD=9.49;ReadPosRankSum=2.970;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:62,25:0.29:87
chr9	66457231	rs140644333	G	GAC	1347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=51.71;MQRankSum=0.465;QD=15.14;ReadPosRankSum=0.941;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:54,35:0.39:89
chr9	66457233	.	G	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=4.785;MLEAC=1;MLEAF=0.500;MQ=51.34;MQRankSum=-2.256;QD=9.04;ReadPosRankSum=2.780;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:65,25:0.28:90
chr9	66457237	.	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=12.778;MLEAC=1;MLEAF=0.500;MQ=51.06;MQRankSum=0.259;QD=2.04;ReadPosRankSum=0.540;SOR=2.697;set=HC	GT:AD:AF:DP	0/1:79,12:0.13:91
chr9	66457241	rs113933538	G	A	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.500;MQ=50.60;MQRankSum=-0.447;QD=10.41;ReadPosRankSum=0.721;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:60,27:0.31:87
chr9	66457253	rs73447820	A	G,C	1209.77	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=101;set=Intersection	GT:AF:DP	0/1:0.56:62
chr9	66457265	.	C	A	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=49.07;MQRankSum=-1.358;QD=6.06;ReadPosRankSum=2.154;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:92,24:0.21:116
chr9	66457270	.	G	A	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=48.99;MQRankSum=-1.277;QD=6.14;ReadPosRankSum=1.556;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:93,24:0.21:117
chr9	66457276	.	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=5.341;MLEAC=1;MLEAF=0.500;MQ=48.77;MQRankSum=-0.147;QD=0.79;ReadPosRankSum=1.683;SOR=1.836;set=HC	GT:AD:AF:DP	0/1:110,12:0.10:122
chr9	66457278	.	G	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.81;MQRankSum=-0.779;QD=5.12;ReadPosRankSum=0.970;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:98,23:0.19:121
chr9	66457310	rs75999199	T	G	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=17.812;MLEAC=1;MLEAF=0.500;MQ=48.30;MQRankSum=-3.721;QD=14.45;ReadPosRankSum=1.476;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:94,62:0.40:156
chr9	66457313	rs79959518	G	A	3242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.898;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=8.669;MLEAC=1;MLEAF=0.500;MQ=48.17;MQRankSum=-6.086;QD=20.27;ReadPosRankSum=-0.999;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:73,87:0.54:160
chr9	66457317	rs77524857	C	T	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.100;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=24.222;MLEAC=1;MLEAF=0.500;MQ=48.53;MQRankSum=-4.184;QD=14.19;ReadPosRankSum=1.915;SOR=0.104;set=HC	GT:AD:AF:DP	0/1:109,63:0.37:172
chr9	66457324	rs80001863	G	A	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=30.225;MLEAC=1;MLEAF=0.500;MQ=48.76;MQRankSum=-4.692;QD=12.27;ReadPosRankSum=1.581;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:123,68:0.36:191
chr9	66457388	rs1809739	T	G	4659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.215;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=21.250;MLEAC=1;MLEAF=0.500;MQ=52.79;MQRankSum=-10.610;QD=19.02;ReadPosRankSum=0.265;SOR=1.762;set=HC	GT:AD:AF:DP	0/1:89,156:0.64:245
chr9	66457399	rs78461570	T	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:204,48:0.19:252
chr9	66457440	rs79030992	A	G	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:341,62:0.15:403
chr9	66457451	rs79122745	T	C	5946.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:267,158:0.37:425
chr9	66457460	rs75525313	G	A	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-2.380;QD=2.14;ReadPosRankSum=-2.978;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:405,53:0.12:458
chr9	66457465	rs11262297	T	G	8306.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:228,240:0.51:468
chr9	66457467	.	G	GTGTGT,GTT	3051.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=476;set=Intersection	GT:AF:DP	0/1:0.21:445
chr9	66457471	.	T	TA	1343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DP=494;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-1.934;QD=2.76;ReadPosRankSum=-2.164;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:424,63:0.13:487
chr9	66457475	rs55747937	C	T	12968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-7.954;QD=25.68;ReadPosRankSum=3.568;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:165,340:0.67:505
chr9	66457480	rs77629849	G	A	8700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-10.161;QD=15.99;ReadPosRankSum=1.957;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:305,239:0.44:544
chr9	66457488	.	G	A	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DP=603;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-1.653;QD=2.19;ReadPosRankSum=2.387;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:521,75:0.13:596
chr9	66457498	rs113875913	G	T	2937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-0.677;QD=4.75;ReadPosRankSum=-1.040;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:498,120:0.19:618
chr9	66457535	rs74360065	T	C	7002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-6.413;QD=11.73;ReadPosRankSum=-0.108;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:388,209:0.35:597
chr9	66457549	rs77706622	A	G	7069.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:371,194:0.34:565
chr9	66457562	rs79475537	C	T	5578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.796;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-0.743;QD=10.67;ReadPosRankSum=2.365;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:359,164:0.31:523
chr9	66457565	.	G	C	5392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;ClippingRankSum=0.000;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-0.192;QD=10.45;ReadPosRankSum=2.518;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:360,156:0.30:516
chr9	66457585	rs78196222	G	T	7232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-0.546;QD=16.00;ReadPosRankSum=-0.048;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:259,193:0.43:452
chr9	66457588	rs10907850	T	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.426;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-2.364;QD=1.54;ReadPosRankSum=1.206;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:390,46:0.11:436
chr9	66457593	rs141224694	C	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=9.356;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-2.711;QD=0.94;ReadPosRankSum=-1.230;SOR=1.452;set=HC	GT:AD:AF:DP	0/1:366,39:0.10:405
chr9	66457594	rs1809740	A	G	12021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-1.318;QD=29.76;ReadPosRankSum=-0.786;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:58,346:0.86:404
chr9	66457601	rs79204868	G	T	4788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.421;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=3.753;QD=12.57;ReadPosRankSum=-1.075;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:248,133:0.35:381
chr9	66457605	rs55842063	C	T	2613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=6.997;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-4.957;QD=7.10;ReadPosRankSum=1.902;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:284,84:0.23:368
chr9	66457609	rs12380199	G	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=9.255;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-2.903;QD=0.72;ReadPosRankSum=-0.549;SOR=1.510;set=HC	GT:AD:AF:DP	0/1:323,31:0.09:354
chr9	66457612	.	C	A	4404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=4.856;QD=12.84;ReadPosRankSum=-2.352;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:223,120:0.35:343
chr9	66457613	rs144074368	C	G	3514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=4.247;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=5.675;QD=11.41;ReadPosRankSum=-2.883;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:210,98:0.32:308
chr9	66457620	rs74362572	C	T	4081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=54.61;MQRankSum=5.075;QD=12.80;ReadPosRankSum=-3.499;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:209,110:0.34:319
chr9	66457633	.	G	A	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=53.48;MQRankSum=5.969;QD=3.72;ReadPosRankSum=-0.280;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:223,46:0.17:269
chr9	66457646	rs78339757	G	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.460;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=7.916;MLEAC=1;MLEAF=0.500;MQ=52.53;MQRankSum=-1.607;QD=0.27;ReadPosRankSum=-0.158;SOR=1.832;set=HC	GT:AD:AF:DP	0/1:202,17:0.08:219
chr9	66457652	rs1809741	C	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:131,66:0.34:197
chr9	66457664	rs78392104	T	C	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:113,51:0.31:164
chr9	66457675	rs75677823	G	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=49.53;MQRankSum=5.233;QD=3.47;ReadPosRankSum=-0.777;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:122,23:0.16:145
chr9	66457690	.	C	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.64;MQRankSum=4.444;QD=3.09;ReadPosRankSum=-0.366;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:95,15:0.14:110
chr9	66457691	rs111684071	A	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:77,28:0.27:105
chr9	66457730	.	A	C	803	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=3;HapScore=4;MGOF=98;MMLQ=28;MQ=42.45;NF=2;NR=36;PP=803;QD=22.0466108565;SC=CTGGCGAAGAAAATGTCCTTC;SbPval=0.89;Source=Platypus;TC=79;TCF=8;TCR=71;TR=38;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:41,38:0.48:79
chr9	66457742	.	T	C	803	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=3;HapScore=4;MGOF=98;MMLQ=28;MQ=42.53;NF=1;NR=30;PP=803;QD=27.0248778241;SC=ATGTCCTTCCTCTGGGGAAAG;SbPval=0.94;Source=Platypus;TC=66;TCF=6;TCR=60;TR=31;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:35,31:0.47:66
chr9	66499220	rs10907866	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:93,39:0.30:132
chr9	66499336	rs185058144	A	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.538;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=52.42;MQRankSum=-2.790;QD=0.49;ReadPosRankSum=-0.297;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr9	66499356	rs201959709	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.332;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.500;MQ=49.71;MQRankSum=-1.795;QD=0.63;ReadPosRankSum=-2.011;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr9	66517185	rs7019764	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=4.841;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-8.235;QD=0.25;ReadPosRankSum=1.062;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:322,43:0.12:365
chr9	66517198	rs10796698	C	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=2.366;QD=0.98;ReadPosRankSum=-2.899;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:330,57:0.15:387
chr9	68372217	rs190581388	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.528;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.79;MQRankSum=-1.017;QD=3.94;ReadPosRankSum=-0.044;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr9	68372238	rs374781801	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.419;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.34;MQRankSum=1.342;QD=7.74;ReadPosRankSum=-2.514;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr9	68372264	rs140520174	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.889;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=16.226;MLEAC=1;MLEAF=0.500;MQ=47.13;MQRankSum=-3.576;QD=3.22;ReadPosRankSum=0.466;SOR=3.776;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr9	68372282	rs147422696	G	T	1305.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.869;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=10.351;MLEAC=1;MLEAF=0.500;MQ=48.37;MQRankSum=1.857;QD=15.92;ReadPosRankSum=2.632;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:48,34:0.41:82
chr9	68372282	.	GC	TT	503	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=1;MGOF=45;MMLQ=22;MQ=40.14;NF=16;NR=10;PP=503;QD=21.4026105716;SC=GGGAAAGGTAGCTCCCTAGTA;SbPval=0.18;Source=Platypus;TC=88;TCF=64;TCR=24;TR=26;WE=68372307;WS=68372272;set=Platypus	GT:AD:AF:DP	0/1:62,26:0.30:88
chr9	68372283	rs150871961	C	T	1305.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.891;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=12.362;MLEAC=1;MLEAF=0.500;MQ=48.59;MQRankSum=2.147;QD=15.54;ReadPosRankSum=2.217;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:48,36:0.43:84
chr9	68372284	rs140186551	T	G	403.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=18.188;MLEAC=1;MLEAF=0.500;MQ=48.82;MQRankSum=-3.036;QD=4.69;ReadPosRankSum=-0.919;SOR=2.879;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr9	68372337	rs140269697	C	T	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=52.89;MQRankSum=-0.058;QD=5.86;ReadPosRankSum=4.433;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:133,61:0.31:194
chr9	68372352	rs78404990	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-1.077;QD=1.10;ReadPosRankSum=-1.404;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:174,34:0.16:208
chr9	68372354	rs80225136	A	G	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=0.266;QD=8.44;ReadPosRankSum=0.034;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:147,61:0.29:208
chr9	68372355	rs80320635	A	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=53.45;MQRankSum=-1.402;QD=0.25;ReadPosRankSum=0.103;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:182,27:0.13:209
chr9	68372357	rs77799799	T	C	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:99,115:0.54:214
chr9	68372367	rs79888407	C	A	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.529;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=0.747;QD=9.10;ReadPosRankSum=-2.583;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:158,59:0.27:217
chr9	68372401	rs75707116	C	T	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=53.39;MQRankSum=2.453;QD=4.58;ReadPosRankSum=-3.341;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:155,36:0.19:191
chr9	68372402	rs78803668	G	A	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:102,86:0.46:188
chr9	68372407	rs74366995	T	C	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.843;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=8.134;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=1.513;QD=4.49;ReadPosRankSum=-2.095;SOR=1.482;set=HC	GT:AD:AF:DP	0/1:152,29:0.16:181
chr9	68372409	.	G	A	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=6.703;MLEAC=1;MLEAF=0.500;MQ=52.95;MQRankSum=1.448;QD=4.09;ReadPosRankSum=-1.886;SOR=1.404;set=HC	GT:AD:AF:DP	0/1:150,28:0.16:178
chr9	68372413	rs77458778	G	A	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.071;MLEAC=1;MLEAF=0.500;MQ=52.87;MQRankSum=1.069;QD=3.59;ReadPosRankSum=-1.552;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:146,26:0.15:172
chr9	68372420	rs77874833	C	G	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.254;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=-2.084;QD=8.10;ReadPosRankSum=0.026;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:118,44:0.27:162
chr9	68372430	rs376337921	G	A	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=52.80;MQRankSum=-0.898;QD=8.04;ReadPosRankSum=1.058;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:112,36:0.24:148
chr9	68372434	rs368849262	C	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=-0.658;QD=7.31;ReadPosRankSum=1.379;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:107,33:0.24:140
chr9	68372441	rs371275705	C	T	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.807;MLEAC=1;MLEAF=0.500;MQ=53.07;MQRankSum=-0.585;QD=7.98;ReadPosRankSum=1.156;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:101,31:0.23:132
chr9	68372465	.	CA	TG	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.620;JOINED;MLEAC=1;MLEAF=0.500;MQ=50.80;MQRankSum=-2.235;QD=1.26;ReadPosRankSum=2.619;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:69,8:0.10:77
chr9	68372470	rs141135096	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=49.42;MQRankSum=-2.279;QD=2.36;ReadPosRankSum=1.614;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:60,9:0.13:69
chr9	68372476	rs140148795	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=-1.745;QD=3.17;ReadPosRankSum=1.280;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr9	68409494	.	T	G	69	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=3;HapScore=2;MGOF=69;MMLQ=24;MQ=47.02;NF=3;NR=2;PP=69;QD=20.7542425094;SC=CTGTGCACCCTGTTTCCCAAT;SbPval=0.16;Source=Platypus;TC=27;TCF=23;TCR=4;TR=5;WE=68409513;WS=68409484;set=Platypus	GT:AD:AF:DP	1/0:22,5:0.19:27
chr9	68409521	.	A	G	438	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=4;MGOF=70;MMLQ=24;MQ=46.88;NF=9;NR=7;PP=438;QD=29.5482007842;SC=GACTTCGTGTAAACTCCAGTC;SbPval=0.13;Source=Platypus;TC=52;TCF=38;TCR=14;TR=16;WE=68409547;WS=68409511;set=Platypus	GT:AD:AF:DP	0/1:36,16:0.31:52
chr9	68409539	rs111658015	C	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.924;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=7.990;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-5.283;QD=3.53;ReadPosRankSum=-0.591;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr9	68409584	.	C	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.971;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=13.880;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-7.348;QD=7.82;ReadPosRankSum=-0.460;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr9	68409590	.	C	T	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.647;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=14.107;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-7.515;QD=7.98;ReadPosRankSum=-0.483;SOR=2.643;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr9	68409602	.	G	C	858.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr9	68409623	rs376674886	G	A	1551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=16.491;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-7.386;QD=17.84;ReadPosRankSum=-3.000;SOR=2.230;set=HC	GT:AD:AF:DP	0/1:45,42:0.48:87
chr9	68409631	rs78137483	T	C	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=18.100;MLEAC=1;MLEAF=0.500;MQ=55.80;MQRankSum=-7.149;QD=17.97;ReadPosRankSum=-2.158;SOR=2.265;set=HC	GT:AD:AF:DP	0/1:45,49:0.52:94
chr9	68409659	rs34008877	C	G	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=13.998;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-6.403;QD=23.94;ReadPosRankSum=1.042;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:43,64:0.60:107
chr9	68409677	rs113826078	A	G	3091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.881;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=-6.763;QD=25.14;ReadPosRankSum=2.332;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:46,77:0.63:123
chr9	68409701	rs112537853	C	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=-6.046;QD=3.16;ReadPosRankSum=-4.432;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:128,20:0.14:148
chr9	68409702	rs79189381	C	G	2930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.342;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=7.529;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-2.204;QD=20.07;ReadPosRankSum=2.757;SOR=1.283;set=HC	GT:AD:AF:DP	0/1:65,81:0.55:146
chr9	68409713	.	A	AACAC	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-5.470;QD=1.68;ReadPosRankSum=-1.234;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:129,16:0.11:145
chr9	68409731	rs80207175	A	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.968;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-6.221;QD=4.31;ReadPosRankSum=0.494;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:103,21:0.17:124
chr9	68409745	rs73649016	C	G	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr9	68409782	.	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.500;MQ=52.06;MQRankSum=-3.328;QD=1.34;ReadPosRankSum=0.689;SOR=0.251;set=HC	GT:AD:AF:DP	0/1:87,10:0.10:97
chr9	68409783	rs202031579	A	C	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.327;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=13.358;MLEAC=1;MLEAF=0.500;MQ=51.97;MQRankSum=-6.224;QD=10.38;ReadPosRankSum=0.591;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:59,35:0.37:94
chr9	68409789	rs79786341	G	C	1942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=51.91;MQRankSum=-7.436;QD=20.89;ReadPosRankSum=2.138;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:33,60:0.65:93
chr9	68409790	.	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=3.138;MLEAC=1;MLEAF=0.500;MQ=51.52;MQRankSum=-3.174;QD=1.49;ReadPosRankSum=-0.732;SOR=0.246;set=HC	GT:AD:AF:DP	0/1:79,10:0.11:89
chr9	68409808	.	T	C	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=4.394;MLEAC=1;MLEAF=0.500;MQ=50.73;MQRankSum=-3.121;QD=5.63;ReadPosRankSum=-0.634;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr9	68409818	.	C	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.88;MQRankSum=-1.941;QD=5.06;ReadPosRankSum=-1.658;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr9	68409869	rs78838824	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=50.68;MQRankSum=-2.653;QD=2.99;ReadPosRankSum=-2.153;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr9	68409907	.	T	A	180.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr9	68409970	rs112552975	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=53.36;MQRankSum=-3.549;QD=2.05;ReadPosRankSum=0.628;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr9	68415193	rs80256038	T	A	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:85,122:0.59:207
chr9	68415196	rs4454394	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=8.161;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=1.392;QD=1.16;ReadPosRankSum=-0.613;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:197,38:0.16:235
chr9	68415212	rs143303312	A	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=6.764;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=1.749;QD=0.54;ReadPosRankSum=0.006;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:291,48:0.14:339
chr9	68415216	rs71234092	G	A	1954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-0.911;QD=5.36;ReadPosRankSum=-1.978;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:264,101:0.28:365
chr9	68415231	rs140259548	T	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-1.567;QD=0.38;ReadPosRankSum=0.681;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:415,54:0.12:469
chr9	68415285	rs138091972	AT	GA	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=0.984;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=1.381;QD=0.45;ReadPosRankSum=-0.709;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:616,57:0.08:673
chr9	68415338	rs75019967	A	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=1.170;QD=1.07;ReadPosRankSum=1.990;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:440,59:0.12:499
chr9	68415372	rs34249371	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.616;QD=0.35;ReadPosRankSum=1.021;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:198,18:0.08:216
chr9	68415379	rs34379288	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.868;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.902;QD=0.59;ReadPosRankSum=1.554;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:137,23:0.14:160
chr9	68415386	rs1844035	G	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=1.642;QD=2.32;ReadPosRankSum=0.693;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:108,27:0.20:135
chr9	68415388	rs4928837	A	T	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:40,88:0.69:128
chr9	68427750	rs78840873	T	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.97;MQRankSum=-0.476;QD=3.28;ReadPosRankSum=0.138;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:128,37:0.22:165
chr9	68427786	rs4300101	C	T	5559.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:41,211:0.84:252
chr9	68427800	rs77055654	C	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=0.386;QD=3.06;ReadPosRankSum=-1.684;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:226,65:0.22:291
chr9	68427818	rs111699417	G	GA	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=-8.078;QD=1.82;ReadPosRankSum=3.072;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:244,60:0.20:304
chr9	68427877	rs4568707	G	A	5752.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:67,244:0.78:311
chr9	68427938	rs113084687	CAT	C	1343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.323;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=8.074;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-3.100;QD=9.14;ReadPosRankSum=0.192;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:106,41:0.28:147
chr9	68427956	rs4316243	T	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:20,90:0.82:110
chr9	68428005	rs77542827	G	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.241;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.955;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-3.077;QD=1.00;ReadPosRankSum=-0.340;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr9	68433454	.	GTCA	G	3316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DP=855;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-1.473;QD=3.97;ReadPosRankSum=4.324;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:704,132:0.16:836
chr9	68433462	rs111392331	T	C	6016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.612;ClippingRankSum=0.000;DB;DP=849;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=51.29;MQRankSum=0.169;QD=7.12;ReadPosRankSum=0.187;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:597,248:0.29:845
chr9	68433464	rs79004307	C	T	8882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.438;ClippingRankSum=0.000;DB;DP=844;ExcessHet=3.0103;FS=3.499;MLEAC=1;MLEAF=0.500;MQ=51.35;MQRankSum=-2.587;QD=10.57;ReadPosRankSum=5.066;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:570,270:0.32:840
chr9	68433468	rs75281072	G	C	13837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.961;ClippingRankSum=0.000;DB;DP=836;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-7.653;QD=16.63;ReadPosRankSum=2.985;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:452,380:0.46:832
chr9	68433481	rs112175502	T	TCTC	2159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.653;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=51.39;MQRankSum=-11.559;QD=2.81;ReadPosRankSum=-7.411;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:657,111:0.14:768
chr9	68433510	rs75661796	C	G	5900.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:436,260:0.37:696
chr9	68433511	rs202018667	C	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=6.151;MLEAC=1;MLEAF=0.500;MQ=50.09;MQRankSum=-2.651;QD=1.67;ReadPosRankSum=-1.592;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:624,73:0.10:697
chr9	68433520	.	T	C	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.173;ClippingRankSum=0.000;DP=669;ExcessHet=3.0103;FS=4.119;MLEAC=1;MLEAF=0.500;MQ=49.04;MQRankSum=-2.017;QD=2.37;ReadPosRankSum=-0.849;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:583,82:0.12:665
chr9	68433522	rs75582795	G	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=9.324;MLEAC=1;MLEAF=0.500;MQ=48.90;MQRankSum=-4.040;QD=0.96;ReadPosRankSum=2.428;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:559,104:0.16:663
chr9	68433523	rs62543350	T	C	16724.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:248,408:0.62:656
chr9	68433537	rs74819687	T	G	21352.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:164,538:0.77:702
chr9	68433548	.	C	T	1560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410;ClippingRankSum=0.000;DP=845;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=49.71;MQRankSum=-3.790;QD=1.88;ReadPosRankSum=8.111;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:740,91:0.11:831
chr9	68433550	rs144797473	A	G	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.783;ClippingRankSum=0.000;DB;DP=871;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=49.56;MQRankSum=-3.743;QD=1.88;ReadPosRankSum=8.140;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:756,94:0.11:850
chr9	68433556	rs76632075	G	T	4271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=902;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=49.56;MQRankSum=6.527;QD=4.96;ReadPosRankSum=-1.499;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:643,219:0.25:862
chr9	68433568	rs139880713	T	C	3791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.083;ClippingRankSum=0.000;DB;DP=942;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=49.48;MQRankSum=-7.932;QD=4.14;ReadPosRankSum=-1.133;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:685,231:0.25:916
chr9	68433612	rs76007226	A	G	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.983;ClippingRankSum=0.000;DB;DP=890;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.51;MQRankSum=-12.509;QD=0.57;ReadPosRankSum=1.379;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:781,70:0.08:851
chr9	68433620	rs62543351	C	T	4718.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	0/1:542,272:0.33:814
chr9	68433625	rs139088975	A	G	4415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.169;ClippingRankSum=0.000;DB;DP=821;ExcessHet=3.0103;FS=6.448;MLEAC=1;MLEAF=0.500;MQ=49.92;MQRankSum=-4.663;QD=5.66;ReadPosRankSum=1.813;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:605,175:0.22:780
chr9	68433635	rs192109483	C	T	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.188;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=49.99;MQRankSum=-12.419;QD=0.96;ReadPosRankSum=7.857;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:664,66:0.09:730
chr9	68433641	rs78330154	G	T	13155.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:330,346:0.51:676
chr9	68433657	rs141211711	A	C	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.698;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.500;MQ=50.12;MQRankSum=-12.455;QD=2.03;ReadPosRankSum=4.825;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:504,66:0.12:570
chr9	68433673	rs150998881	A	G	2083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.111;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=9.755;MLEAC=1;MLEAF=0.500;MQ=50.06;MQRankSum=-2.290;QD=4.45;ReadPosRankSum=-0.856;SOR=1.496;set=HC	GT:AD:AF:DP	0/1:352,116:0.25:468
chr9	68433701	rs62543352	A	G	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=48.72;MQRankSum=7.299;QD=4.85;ReadPosRankSum=-0.287;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:173,61:0.26:234
chr9	69002193	rs75969422	T	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.522;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-1.296;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr9	69002200	rs10908046	C	T	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.363;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:51,22:0.30:73
chr9	69002294	rs79965448	C	T	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=-0.339;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:158,57:0.27:215
chr9	69002304	rs78546776	C	A	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-0.279;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:179,63:0.26:242
chr9	69002317	rs76266132	T	C	2292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.776;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:209,75:0.26:284
chr9	69002413	rs62555122	T	C	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.673;QD=7.65;ReadPosRankSum=0.369;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:128,45:0.26:173
chr9	69002423	rs62555123	G	A	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.090;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.732;QD=7.99;ReadPosRankSum=1.545;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:119,39:0.25:158
chr9	69256741	rs62557778	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.88;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	69256816	rs62557779	G	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.36;QD=26.87;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	70999315	rs17081271	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr9	71114312	rs12685375	C	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr9	71478595	rs72720038	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr9	71478986	rs10869434	G	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr9	71538069	rs2027208	A	G	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	71555492	rs10746973	A	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	71555522	rs10746974	C	T	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	71628207	rs3730386	G	C	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:123,96:0.44:219
chr9	71650752	rs2481598	A	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	71668197	rs3829062	T	C	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	71686181	rs9314854	T	C	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	71687400	rs3066313	C	CTG	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	71687440	rs7025834	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	71687755	rs146039377	TTTG	T	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	71789104	rs62567129	G	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	71820008	rs2498440	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	71831398	rs2498417	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	71840396	rs17062682	C	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr9	71843023	rs2309428	C	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:72,57:0.44:129
chr9	71849335	rs80014470	C	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-2.088;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr9	71849518	rs78681248	A	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.000;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr9	71852760	rs2309421	G	A	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=-0.552;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:101,69:0.41:170
chr9	71853465	rs75392135	G	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr9	71854727	rs10867196	C	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr9	71854737	rs72187140	TAAAC	T	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr9	71854769	rs2993823	C	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr9	71862817	rs41308892	C	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr9	71862975	rs2282336	C	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr9	71862987	rs2095876	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr9	71863235	rs77236826	A	G	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:101,102:0.50:203
chr9	71863363	rs11793527	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr9	71986276	rs74709394	G	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr9	71986315	rs1034239	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr9	72000674	rs10867436	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.09;ReadPosRankSum=1.856;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr9	72002911	rs5898077	T	TGTTATA	3802.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:118,98:0.45:216
chr9	72006393	rs139462503	C	CT	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.058;QD=7.63;ReadPosRankSum=-0.633;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:48,42:0.47:90
chr9	72046057	.	GA	G	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.333;QD=3.71;ReadPosRankSum=-0.528;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr9	72064749	rs2781532	T	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	72082970	rs10867613	C	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr9	72086415	rs1761287	T	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr9	72132199	rs11139063	G	A	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	72338180	rs11139996	T	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	72373624	rs10735564	A	G	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	72373716	rs10780612	G	C	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.871;QD=14.73;ReadPosRankSum=0.363;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:26,37:0.59:63
chr9	72373752	rs10780613	A	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.919;QD=14.29;ReadPosRankSum=1.353;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr9	72373775	rs72268955	TAAA	T	219.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;QD=31.39;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	72374677	rs2274745	T	G	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	72374941	rs2274744	C	A	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.172;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr9	72374969	rs2252130	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	72472746	rs35585376	TA	T	704.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr9	72472831	rs10780682	C	T	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr9	72473053	rs1133275	TG	CA	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr9	72501698	rs4407955	G	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	72501962	rs4548246	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr9	72517162	rs12344550	T	C	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-1.655;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:119,93:0.44:212
chr9	72517293	rs11140833	G	T	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-2.123;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:63,66:0.51:129
chr9	72723062	rs1927104	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr9	72740974	rs1927112	A	G	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	72741312	rs1998972	G	A	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	72783608	rs10780871	T	C	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	72785653	rs4744587	T	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	72882642	rs7027209	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr9	72893298	rs10714271	GT	G	240.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr9	72897434	rs1180116	G	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=0.436;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr9	72901096	rs1180123	T	C	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	72933958	rs7025228	G	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	72939073	rs186651790	C	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-0.899;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr9	72965438	rs1536957	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	73002648	rs7020167	C	G	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	73150873	rs17535963	T	G	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:86,79:0.48:165
chr9	73150918	rs41287373	C	T	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:84,82:0.49:166
chr9	73150984	rs6560142	C	T	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,85:0.48:178
chr9	73151715	rs7033976	C	T	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	73151970	rs3739776	C	T	2131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=6.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-0.519;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:90,98:0.52:188
chr9	73164611	rs1889914	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr9	73164712	rs1889915	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr9	73234066	rs7849400	G	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	73234884	rs3829095	G	C	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	73240312	rs7035025	C	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	73250037	rs4322073	C	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	73250096	rs117745369	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr9	73255337	rs1538670	A	C	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	73255432	rs1538669	G	C	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	73391409	rs34030044	C	CA	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	73408385	.	AAT	A	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.25;ReadPosRankSum=-0.967;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr9	73408518	rs10868890	T	G	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=0.420;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:59,60:0.50:119
chr9	73442635	rs1034539	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr9	73442724	rs1034538	C	T	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:86,103:0.54:189
chr9	73457832	rs1337031	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr9	73457861	rs1337030	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr9	73458045	rs3833697	T	TA	502.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr9	73461337	rs7862440	T	A	2644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=1.386;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:144,132:0.48:276
chr9	73461558	rs10868907	G	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr9	73479213	rs10780981	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr9	74300311	rs36080695	T	TA,TAA	649.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=0.813;SOR=0.321;set=HC	GT:AD:AF:DP	1/2:1,15,17:0.45,0.52:33
chr9	74300640	rs2310021	A	G	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	74314210	rs4263836	A	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	74326961	rs3739781	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	74331267	rs5898225	GA	G	51.70	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr9	74331376	rs4745117	A	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	74349917	.	CAAA	C,CA	2313.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=3.628;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.221;QD=25.43;ReadPosRankSum=0.898;SOR=0.707;set=HC	GT:AD:AF:DP	1/2:9,21,61:0.23,0.67:91
chr9	74477617	rs10573097	TAAGA	T	1397.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	74526540	rs4744647	T	A	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	74526978	rs10580392	GCA	G	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	74561883	rs10120169	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	74622941	rs11143055	G	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr9	74671719	rs13295099	T	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.562;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr9	74671828	rs36059196	CT	CTT,C	123.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=22;set=Intersection	GT:AF:DP	0/1:0.62:13
chr9	74674427	rs7047632	A	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr9	74675343	rs10869090	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr9	74675604	rs12345527	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr9	74825707	rs11143170	T	C	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:133,116:0.47:249
chr9	74834384	rs10869148	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr9	74845989	rs10869150	C	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr9	74846104	rs17057536	A	G	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr9	74846187	rs34627726	TA	T	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.797;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr9	74863449	rs3830994	AG	A	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr9	74974534	rs3012505	C	T	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	74975136	rs2809270	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	74975711	rs1853276	T	C	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	74979593	rs2224603	G	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	75242814	rs36038786	AT	A	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=0.863;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr9	75303653	rs2589615	C	T	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:96,74:0.44:170
chr9	75315438	rs1796993	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr9	75315641	rs66939074	TATATATATATATATATATACACACACACACACACATACAC	T	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.68;ReadPosRankSum=1.150;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr9	75357542	rs7848136	A	G	347.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr9	75357543	rs146170244	GAAACAAAC	G	338.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr9	75521060	rs348472	A	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	75539077	rs3739962	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr9	75540276	rs8187932	AT	A	300.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr9	75541942	rs2303317	G	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr9	75543974	rs8187922	T	TAA	2672.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	75544038	rs2288087	A	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr9	75545882	rs13959	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr9	75554952	rs7027604	A	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr9	75554982	rs348449	G	A	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	75782510	rs1342017	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr9	75783937	rs3739959	A	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr9	77230423	rs3904059	A	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.215;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr9	77230477	rs3904058	A	G	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	77245162	rs2146777	A	T	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	77282927	rs1327838	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr9	77286876	rs3818559	A	C	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=5.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=1.522;SOR=0.185;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr9	77376633	rs2274925	A	G	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:108,101:0.48:209
chr9	77376647	rs2274924	T	C	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:131,114:0.47:245
chr9	77378082	rs45616231	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr9	77386857	rs34783728	T	TAA	690.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr9	77397519	rs12339024	T	C	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr9	77415284	rs7859201	A	C	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	77415535	rs10617132	TAA	T	422.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.18;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	77436641	rs7018994	G	A	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	77442616	rs7045949	C	T	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=26.54;SOR=1.233;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	77454821	.	G	GGAGGGAGGGAGGGAGGGAGA	312.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.74;MQRankSum=1.085;QD=34.75;ReadPosRankSum=0.319;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr9	77478815	rs11144121	T	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.05;ReadPosRankSum=-0.394;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	77478816	rs60062173	A	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr9	77479009	rs146980246	A	G	2173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.551;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:116,109:0.48:225
chr9	77502160	rs1333342	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr9	77563087	rs2769058	C	T	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr9	77563175	rs67215531	GTTT	G	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr9	77599683	rs10869465	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr9	77611258	rs10869466	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr9	77668969	rs773145	G	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	77669152	rs13294415	G	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr9	77676278	rs41287433	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.283;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr9	77681129	.	C	A	1868.77	.	AC=1;AF=0.500;AN=2;DP=165;set=Intersection	GT:AD:AF:DP	0/1:75,89:0.54:164
chr9	77681179	rs7852863	C	T	5287.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	77684690	rs3752955	A	C	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	77692555	rs60305501	CT	C	232.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	77697929	rs2273767	C	G	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,71:0.45:157
chr9	77703431	rs73544571	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr9	77745424	rs2295861	T	C	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	77746804	rs2281662	T	C	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr9	77748151	rs7040349	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr9	77752510	rs2273769	C	T	2246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.703;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:99,109:0.52:208
chr9	77752675	rs2025159	A	G	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	78506145	rs7020560	G	A	2120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.845;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:106,103:0.49:209
chr9	78506187	rs7040769	T	C	10098.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr9	78601268	rs1538843	G	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	78711053	rs1416547	T	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr9	78748962	rs141353765	ACT	A	1955.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr9	78748980	.	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.472;QD=0.82;ReadPosRankSum=0.482;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:95,27:0.22:122
chr9	78773953	rs2297342	G	A	4304.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:217,203:0.48:420
chr9	78790151	.	T	TG	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=1.692;QD=3.65;ReadPosRankSum=1.384;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr9	78790153	.	A	AATGGAATGG	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-0.000;QD=11.52;ReadPosRankSum=-1.006;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr9	78790187	.	G	C	499	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=4;MGOF=67;MMLQ=24;MQ=41.75;NF=0;NR=13;PP=499;QD=41.0593240421;SC=GGAATGGAATGGAATCGAATC;SbPval=1.0;Source=Platypus;TC=44;TCF=3;TCR=41;TR=13;WE=78790205;WS=78790177;set=Platypus	GT:AD:AF:DP	1/0:31,13:0.30:44
chr9	78796522	rs2270570	A	G	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:112,83:0.43:195
chr9	78799566	rs1537183	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	78803466	rs7046850	T	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	78804206	rs150226536	G	GAAAAT	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	78808329	rs3077117	G	GAAAA	1068.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.15;QD=42.75;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	78809822	rs7019429	A	G	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	78820011	rs7851394	G	A	6380.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	78842380	rs1390141	A	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:66,58:0.47:124
chr9	78848542	rs903545	C	G	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	78848554	rs7854396	G	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr9	78907078	rs1546151	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr9	78907125	rs1546150	C	T	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr9	78907134	rs3077145	AT	A	1632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=-0.428;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:41,45:0.52:86
chr9	78910108	rs13283901	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr9	78910401	rs10869747	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr9	78917015	rs11451259	T	TA	498.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;QD=20.78;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	78923351	rs6560510	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr9	78925814	rs2257775	C	A	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	78936358	rs1110222	G	A	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.893;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=8.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=3.152;SOR=0.262;set=HC	GT:AD:AF:DP	0/1:49,63:0.56:112
chr9	78936492	rs1110223	A	G	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:120,100:0.45:220
chr9	78936564	rs11144829	G	A	1719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=0.442;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:73,81:0.53:154
chr9	78937877	rs34797584	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr9	78937901	rs55903217	T	C	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.50;ReadPosRankSum=-1.606;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr9	78937901	.	TAC	CAT	1074	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=3;MGOF=32;MMLQ=27;MQ=60.0;NF=22;NR=7;PP=1074;QD=38.8782025815;SC=GGAGCTAGCCTACTGCAGACA;SbPval=0.38;Source=Platypus;TC=54;TCF=43;TCR=11;TR=29;WE=78937911;WS=78937891;set=Platypus	GT:AD:AF:DP	1/0:25,29:0.54:54
chr9	78937903	rs55805812	C	T	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.73;ReadPosRankSum=-1.817;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:24,37:0.61:61
chr9	78937929	rs56332566	AC	A	1898.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:37,71:0.66:108
chr9	78937974	rs3001772	C	T	4821.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	78938043	rs2495207	G	A	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:101,124:0.55:225
chr9	78938186	rs2803429	G	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr9	78938246	rs2803430	T	C	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-2.142;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr9	78938256	rs2259775	C	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-2.373;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr9	78942956	rs2259969	A	G	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	79003324	rs2501926	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	79003440	rs2501924	G	A	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	79003516	rs10781358	C	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr9	79009106	rs2490582	A	C	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	79009204	rs11548954	C	T	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	79117751	rs2282683	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:75,69:0.48:144
chr9	79118329	rs1057406	G	A	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:111,148:0.57:259
chr9	79118631	rs111772588	AC	A	1066.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr9	79118661	rs1057419	A	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr9	79240050	rs700809	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	79244208	rs370679936	TA	T	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.096;QD=2.40;ReadPosRankSum=0.252;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:48,22:0.31:70
chr9	79251600	rs582011	T	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr9	79253347	rs3739518	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr9	79256917	.	TA	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.968;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:97,37:0.28:134
chr9	79259592	rs511040	C	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:66,41:0.38:107
chr9	79259850	rs512951	A	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr9	79306919	rs498266	G	A	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.041;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.273;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:50,44:0.47:94
chr9	79307106	.	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.049;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr9	79307176	rs500952	G	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr9	79318367	rs4745571	T	C	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,82:0.51:161
chr9	79318375	rs11267615	GGTGACAGCCTGCAAC	G	2848.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr9	79318471	rs560094	C	T	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.495;QD=10.17;ReadPosRankSum=1.908;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:70,64:0.48:134
chr9	79318677	rs561970	T	C	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:96,110:0.53:206
chr9	79318921	rs620985	A	G	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr9	79318998	rs620552	A	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr9	79319050	rs620476	A	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr9	79319130	rs59728338	AT	A	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.75;ReadPosRankSum=0.978;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	79320640	rs512110	C	T	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr9	79321276	rs517634	T	C	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:140,114:0.45:254
chr9	79321871	rs577993	C	T	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:75,66:0.47:141
chr9	79322068	rs683866	G	T	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:92,129:0.58:221
chr9	79322674	rs680775	A	G	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:87,76:0.47:163
chr9	79322720	rs680729	A	G	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.009;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:83,72:0.46:155
chr9	79324135	rs11267622	A	ATGACTGTTGCAG	3562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.011;QD=20.48;ReadPosRankSum=-0.274;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:87,87:0.50:174
chr9	79324179	rs530978	G	A	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:119,104:0.47:223
chr9	79324741	rs557352	T	C	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:122,74:0.38:196
chr9	79325558	rs600859	G	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:100,95:0.49:195
chr9	79325615	rs611461	A	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:61,69:0.53:130
chr9	79471995	rs12238848	T	C	7691.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	79820202	.	C	CT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.193;QD=4.36;ReadPosRankSum=0.367;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr9	79835312	.	A	AT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.565;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr9	79888396	rs2050831	A	G	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	79896655	.	G	GTA	34	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.63;NF=1;NR=1;PP=34;QD=20.5;SC=GTGTATATGTGTATATATATA;SbPval=0.52;Source=Platypus;TC=13;TCF=9;TCR=4;TR=2;WE=79896663;WS=79896645;set=Platypus	GT:AD:AF:DP	1/0:11,2:0.15:13
chr9	79968293	.	G	GT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.786;QD=1.04;ReadPosRankSum=1.052;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr9	79972503	rs72746088	T	C	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr9	80044056	rs2296781	G	A	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr9	80049298	rs1801258	C	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr9	80343587	rs5898555	G	GA	440.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.552;QD=11.91;ReadPosRankSum=0.233;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr9	80851350	rs10867166	G	C	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:157,148:0.49:305
chr9	80851527	rs13292584	G	A	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=7.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-1.057;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:89,91:0.51:180
chr9	80868354	rs3824547	G	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr9	80877777	rs11137579	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.48;ReadPosRankSum=0.549;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr9	80912115	rs2277148	G	C	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	80915403	rs10121107	A	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr9	80917096	rs3739473	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr9	80919756	rs3739474	T	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr9	80921446	rs944513	G	T	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=0.644;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr9	80923423	.	C	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.397;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr9	80932515	rs3780193	C	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-1.123;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr9	82187750	rs1934610	A	G	7678.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr9	82189914	rs2791566	T	C	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	82267732	rs2297499	C	G	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	82286286	rs1475674	C	G	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	82286352	rs2297498	G	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	82308390	rs11138336	G	A	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	82308670	rs7025437	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	82320887	rs4877147	A	T	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	82333094	.	C	CT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-1.293;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr9	82333505	rs74917162	A	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr9	82335293	rs71979610	GT	G	429.92	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=1.479;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr9	82335295	rs377409028	GTGT	G	429.92	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=1.767;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr9	84202822	rs5898747	C	CGTGT	636.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=-2.615;QD=10.27;ReadPosRankSum=1.798;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr9	84202823	.	G	GTGTGTGTGTGTGTGTGTGTCATCCCGCC	1031.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=6.147;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=4.928;QD=12.58;ReadPosRankSum=0.616;SOR=1.348;set=HC	GT:AD:AF:DP	0/1:54,28:0.34:82
chr9	84205860	rs8782	G	A	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:53,77:0.59:130
chr9	84207857	rs2796471	A	G	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr9	84214819	rs9886672	T	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	84235255	rs55712377	G	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr9	84235728	rs59790457	C	T	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,77:0.59:130
chr9	84248203	rs113273526	CGTGTGTGTGTGTGT	CGT,C	685.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	1/1:1.00:16
chr9	84267147	rs2228173	T	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	84268878	rs2796447	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr9	84275014	rs2627002	C	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	84275095	rs2796450	C	T	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.29;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	84275256	rs36108203	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=8.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.004;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr9	84300694	rs2244337	A	C	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	84302489	rs2129105	G	A	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	84530065	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.665;QD=0.58;ReadPosRankSum=-0.428;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr9	84604599	rs145158256	TAATG	T	1735.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr9	84606647	rs112107496	A	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr9	84607758	rs10867826	T	A	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:92,110:0.54:202
chr9	85597720	.	CAG	C	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.183;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr9	85677254	rs10573978	AG	A	2954.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:4,108:0.96:112
chr9	85863091	rs10114696	A	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,65:0.46:140
chr9	85905666	rs942283	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr9	85905737	rs942282	C	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr9	85905786	rs942281	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	85913590	rs11140011	A	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr9	85914243	rs1359168	A	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr9	85928470	rs12375992	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr9	85964450	rs4877253	A	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr9	86004993	rs7853850	C	T	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:63,62:0.50:125
chr9	86238086	rs2811903	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	86241489	rs2780977	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	86243933	rs2811905	G	T	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	86256431	rs2811917	T	A	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	86258685	rs1052690	A	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr9	86278913	rs2781004	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr9	86279015	rs2781003	C	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-0.018;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr9	86279025	rs2781002	T	C	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.477;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr9	86284178	rs1044175	C	A	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-0.646;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:128,89:0.41:217
chr9	86297739	rs57150962	G	GT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-0.147;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr9	86297781	rs72746868	T	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr9	86327898	rs10119344	C	T	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:106,97:0.48:203
chr9	86354663	.	T	TA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.465;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.237;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr9	86354810	rs2287373	T	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr9	86368105	rs10868053	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.604;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr9	86399815	rs7021357	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr9	86468715	rs295274	A	T	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:92,94:0.51:186
chr9	86474115	rs55654273	T	C	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:124,108:0.47:232
chr9	86474411	rs11999592	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr9	86485622	.	CT	C	150.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-1.136;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr9	86503542	rs11140284	C	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr9	86518796	rs12001918	T	C	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:119,137:0.54:256
chr9	86523673	rs11364843	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.524;QD=6.07;ReadPosRankSum=0.096;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr9	86571454	rs41282419	C	T	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:84,89:0.51:173
chr9	86591857	rs2274915	T	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr9	86592928	rs3737134	A	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr9	86593077	rs3737135	A	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr9	86617265	rs1982151	A	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	86895089	.	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.050;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr9	86904958	rs11568389	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr9	86920117	rs36082472	GA	G	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.105;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr9	86924820	rs41307444	C	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr9	87285915	rs1187326	C	T	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	87285992	rs1211166	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	87360106	rs144586764	ACACCT	A	2141.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	87475806	rs143811359	GTTTATTTA	G	847.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.22;ReadPosRankSum=0.581;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr9	87563252	rs1078947	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	87563562	rs2289656	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr9	88269947	rs675837	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr9	88275838	rs606606	T	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-1.293;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr9	88287602	.	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.817;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr9	88287647	rs58395641	AT	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=0.923;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr9	88356668	rs10114338	A	C	62.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.48;ReadPosRankSum=-0.210;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr9	88356743	rs10114347	A	G	252.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=-0.432;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr9	88464394	rs200430907	A	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:131,42:0.24:173
chr9	88618462	rs1328923	C	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	88667582	rs10780743	T	G	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	88924057	rs4520250	A	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.554;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr9	88924985	rs5898925	C	CT	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr9	88925534	rs5898926	ATG	A	193.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr9	88932226	rs41316484	A	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr9	88934624	rs700760	G	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr9	88937851	rs58050565	ATTT	A	1032.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr9	88941549	rs791312	C	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr9	88943171	rs791314	T	C	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:71,72:0.50:143
chr9	88959938	rs791323	C	T	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr9	89763851	rs458983	C	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	90062823	rs12682834	A	G	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	90219920	rs36207428	G	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,77:0.64:120
chr9	90220134	rs41283675	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr9	90296193	rs72033969	C	CAAAAAAAA	1131.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;QD=47.16;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	90313717	rs3128495	G	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	90316635	rs148030008	ATT	A	1737.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.485;QD=20.44;ReadPosRankSum=1.089;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:18,67:0.79:85
chr9	90316710	rs3118858	T	C	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	90320954	rs1927973	G	A	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	90321583	rs3118863	C	T	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	90322023	rs1056719	G	A	14221.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr9	90343456	.	A	AT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=1.229;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr9	90387628	rs7024674	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	90387655	rs17053460	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr9	90387805	rs9410955	A	C	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	90388539	rs10735592	T	A	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	90396135	rs9410963	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-1.177;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr9	90462253	rs7018666	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:66,88:0.57:154
chr9	90472942	rs7467380	T	C	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	90472952	rs7469954	G	A	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	90473899	rs34537969	AG	A	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	90473902	rs34415878	G	C	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	90473914	rs7874019	A	C	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	90473973	rs7874197	C	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	90474021	rs13292077	C	T	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	90474097	rs9695836	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	90474105	rs146503815	GGGAAGGCCTCAC	G	1576.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	90500405	rs7850542	A	C	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:277,200:0.42:477
chr9	90501448	rs4076795	C	A	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr9	90502458	rs10868670	T	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr9	90502819	rs10868671	T	C	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:119,109:0.48:228
chr9	90503007	rs11789780	A	G	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr9	90503451	rs11142017	G	A	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:162,174:0.52:336
chr9	90534156	rs202161190	T	TTCTTGTCTCCCAGCGTCA	5012.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr9	90537030	.	G	A	1211.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr9	90537856	rs79747501	A	G	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.67;QD=26.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	90537892	rs147621256	G	C	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.67;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	90559129	rs7027067	G	A	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	90586043	rs622418	G	A	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	90588814	rs570184	C	G	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	90588903	rs665983	C	T	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	90589016	rs666459	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	90589502	rs576555	G	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	90654610	.	C	T	430.77	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr9	90744936	rs200880066	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=6.389;MLEAC=1;MLEAF=0.500;MQ=48.28;MQRankSum=-4.615;QD=0.95;ReadPosRankSum=1.835;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr9	90748604	rs144265118	G	C	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:130,86:0.40:216
chr9	90748837	rs10868714	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr9	91089962	.	CTTTTTTTTTTTTTTT	C	882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=35.278;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.783;QD=25.22;ReadPosRankSum=1.212;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr9	91262296	rs4543636	G	A	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:63,89:0.59:152
chr9	91262343	rs5899049	A	ATGG	2383.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:62,64:0.51:126
chr9	91262493	rs72751473	AG	CT	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;JOINED;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr9	91262597	rs7862585	A	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr9	91360612	rs28624420	T	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr9	91628546	rs944483	A	C	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	91653257	rs144228410	TAAA	T	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=9.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.72;ReadPosRankSum=-0.256;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr9	91656843	rs17526079	A	G	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.301;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:41,38:0.48:79
chr9	91656963	rs3750399	T	C	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=1.050;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:83,86:0.51:169
chr9	91661746	rs7022911	C	G	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	91666812	rs7021743	C	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr9	91667136	rs7025214	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr9	91680531	rs3818668	C	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr9	91793085	rs61755089	C	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.531;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr9	91927022	rs3211669	T	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	91934787	rs3763616	A	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	91953252	rs7851988	T	C	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	91978397	rs13295305	C	T	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	91978539	rs13297725	A	T	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	91978783	rs45515192	G	A	5707.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	91978990	rs45615438	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	92003749	rs7465881	A	G	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,100:0.52:193
chr9	92011517	rs28725340	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr9	92011763	rs13283585	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr9	92017733	rs41287361	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr9	92017824	rs13284404	C	T	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:68,95:0.58:163
chr9	92018075	rs34910857	G	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr9	92020159	rs13287862	T	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr9	92020433	rs7856677	G	A	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	92219896	rs3138497	C	A	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	92219921	rs3138499	A	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	92785610	rs586750	G	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr9	93606676	rs2278275	A	G	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	93624755	rs914928	T	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr9	93627484	rs4744516	C	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr9	93629347	rs1760124	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	93629630	rs7020271	T	C	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:167,156:0.48:323
chr9	93629789	rs965892	C	G	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	93637015	rs2290890	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:119,66:0.36:185
chr9	93639803	rs1760132	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	93639973	rs2290888	G	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:80,67:0.46:147
chr9	93640009	rs2290887	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr9	93640120	rs2290886	C	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr9	93641175	rs2306041	C	T	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:140,133:0.49:273
chr9	93641282	rs2306039	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr9	93650015	rs2126053	T	A	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-1.406;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:56,62:0.53:118
chr9	93657761	rs158689	A	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr9	94118258	rs10991898	C	T	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.294;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:61,56:0.48:117
chr9	94456490	rs923772	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	94456643	rs923771	G	C	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	94456705	rs923770	T	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=1.467;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	94456714	rs923769	C	T	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	94485928	rs2230578	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	94486321	rs10761129	C	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	94486688	rs10992063	G	A	8838.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	94487459	rs10992065	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr9	94495608	rs10820900	T	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	94499618	rs7855522	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	94518328	rs12683181	C	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	94919672	rs7858880	G	C	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-0.392;QD=10.16;ReadPosRankSum=1.611;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:68,64:0.48:132
chr9	94919766	rs7874985	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr9	94939380	rs78398569	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr9	94939615	rs4744122	T	C	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	94939679	rs80312504	G	A	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,80:0.56:144
chr9	94939981	rs9299400	G	A	4122.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:226,194:0.46:420
chr9	94940133	rs9299401	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr9	94949018	rs4744123	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr9	94972916	rs1058751	T	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr9	94972966	rs1058726	A	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr9	94985637	rs556155	T	C	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.233;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:30,52:0.63:82
chr9	94991112	rs72190547	AATGAGGAGGC	A	708.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr9	94991509	rs1175931	A	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr9	95004421	rs41280213	G	C	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.954;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:54,57:0.51:111
chr9	95016215	rs10820960	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:106,84:0.44:190
chr9	95018903	rs9299403	A	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr9	95022637	rs10820962	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr9	95027436	rs10820963	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr9	95030690	rs2295939	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr9	95039956	.	TAA	T	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.58;ReadPosRankSum=0.564;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr9	95042917	rs3736835	G	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	95048976	rs41276829	T	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr9	95054995	rs17678567	G	C	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr9	95055580	rs143232399	CAATAA	C	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	95060547	.	G	C	1369.77	.	AC=1;AF=0.500;AN=2;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr9	95061133	rs41276843	A	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr9	95062945	rs116061281	A	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr9	95068046	rs1133908	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr9	95094725	.	C	T	357.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr9	95142012	rs41278665	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=10.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=1.998;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr9	95147840	rs1053441	T	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr9	95155563	rs2274966	C	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,40:0.39:102
chr9	95177787	rs41278689	T	C	333.41	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr9	95219597	rs4744132	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	95219777	rs76930379	T	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr9	95222563	rs112870954	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr9	95237024	rs111419727	C	CTCA	1127.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr9	95274338	rs2296667	A	G	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:81,63:0.44:144
chr9	95274526	rs41280065	C	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr9	95276837	rs117548897	G	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr9	95284982	rs10120210	T	G	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:89,89:0.50:178
chr9	95362665	rs1874128	G	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr9	95373884	rs1552908	A	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr9	95378353	rs2274413	G	A	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:72,74:0.51:146
chr9	95397418	rs1111047	C	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr9	95400642	rs41266683	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr9	95405048	rs35248147	A	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr9	95418922	.	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.361;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:68,13:0.16:81
chr9	95421123	rs118174366	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr9	95432025	rs200964748	A	AG	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr9	95481975	rs56339669	C	G	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:140,152:0.52:292
chr9	95526667	rs2277164	G	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr9	95571939	rs117956773	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr9	95572247	rs10821018	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr9	95580726	rs143411689	TTTTG	T	4608.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.79;QD=43.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	95580745	rs71364316	GT	G	1283.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.107;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-1.674;SOR=1.748;set=HC	GT:AD:AF:DP	1/1:7,76:0.92:83
chr9	95618605	rs56121719	T	TA	1053.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=6.241;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=1.001;SOR=0.124;set=HC	GT:AD:AF:DP	1/1:8,59:0.88:67
chr9	95618657	rs56233957	CA	C	555.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr9	95619658	rs117187942	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr9	95738781	rs3802381	C	A	5734.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	95766471	rs6479445	A	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	95772799	rs151317911	A	AAGAGAC	1000.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	95780267	rs7048701	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	95780465	rs7048975	A	G	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	95784485	rs10821054	A	T	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	95784509	rs10992583	A	T	4061.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	95797999	rs4073460	C	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	95838036	.	G	A	101	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=15;HapScore=4;MGOF=74;MMLQ=28;MQ=58.84;NF=0;NR=4;PP=101;QD=33.9428031368;SC=CCCCCCCCCCGCCATGCCTCA;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=4;WE=95838044;WS=95838012;set=Platypus	GT:AD:AF:DP	1/0:6,4:0.40:10
chr9	95838070	rs1131768	G	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr9	95840077	rs4341217	A	G	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr9	95840256	rs1131773	A	G	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.259;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.716;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:73,71:0.49:144
chr9	95840344	rs4077811	A	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr9	95841741	rs76292544	A	T	1940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=0.002;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:137,103:0.43:240
chr9	95872744	rs3819011	C	T	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	95872996	rs33945538	C	T	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:139,135:0.49:274
chr9	95874070	rs2027585	G	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	95874428	rs10821071	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	95875447	rs12003264	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr9	95875556	rs2298242	G	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	95875575	rs2298243	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.56;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	95887320	rs2275848	G	T	6221.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	95896571	.	C	CGCCCGCCCCCG	224.84	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	95992213	rs7871272	A	G	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	96000622	rs1539670	C	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	96015256	rs4744201	C	T	8332.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr9	96015377	rs4744202	A	G	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	96015398	rs4744203	A	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	96019118	rs10122466	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	96021312	rs10761203	G	A	35441.77	.	AC=2;AF=1.00;AN=2;DB;DP=1349;set=Intersection	GT:AD:AF:DP	1/1:0,1343:1.00:1343
chr9	96024794	rs7854000	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	96024859	rs1936403	A	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	96025717	rs10649709	C	CAG	2499.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	96025771	rs6479467	G	A	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	96026122	rs147436035	T	TG	656.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	96030230	rs7856268	T	C	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	96031253	rs146706748	C	T	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=5.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=1.677;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:43,49:0.53:92
chr9	96031262	rs1936401	T	C	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	96051521	rs2169756	A	G	5021.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	96052179	rs2306183	G	A	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	96097747	rs78436873	C	T	5209.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	96209943	rs10821128	T	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr9	96213291	rs10992740	A	G	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:83,110:0.57:193
chr9	96214928	rs1055710	G	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr9	96238578	rs10821135	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:67,81:0.55:148
chr9	96238731	rs10821136	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr9	96289269	rs10739950	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr9	96292025	rs10761232	A	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr9	96392182	rs10992812	G	A	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.745;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=0.035;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:45,64:0.59:109
chr9	96398508	rs2398851	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.38;ReadPosRankSum=-0.210;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr9	96407822	rs6479500	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr9	96407848	rs7851271	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr9	96415653	rs3750354	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr9	96420390	rs3763605	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr9	96422420	rs10992836	T	C	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:146,102:0.41:248
chr9	96425138	rs3750358	T	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr9	96425363	rs3750359	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:86,47:0.35:133
chr9	96425777	rs7036592	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.25;ReadPosRankSum=0.566;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr9	96426049	rs112327078	T	TCACA	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	96428457	rs10992840	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr9	96439004	rs149736720	C	CCCTGCCTCCACCACA	2472.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:89,66:0.43:155
chr9	96581893	rs4743934	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	96714491	rs11793856	C	G	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:136,93:0.41:229
chr9	96714981	rs12684081	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,82:0.51:161
chr9	96717162	.	C	G	142.94	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr9	96827123	rs10993039	C	G	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:82,86:0.51:168
chr9	96857782	.	TA	T	1349.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr9	96857784	.	A	T	1355.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=0.417;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:50,37:0.43:87
chr9	96857784	.	AAA	TAT	1415	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=22;MQ=60.0;NF=10;NR=17;PP=1415;QD=54.387699069;SC=TTTAAACATAAAAGGAATAAG;SbPval=0.48;Source=Platypus;TC=77;TCF=27;TCR=50;TR=27;WE=96857794;WS=96857772;set=Platypus	GT:AD:AF:DP	0/1:50,27:0.35:77
chr9	96857786	.	A	T	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=0.362;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:48,36:0.43:84
chr9	97054922	rs371262494	T	TGC	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr9	97055235	.	G	GT	820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.353;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:35,46:0.57:81
chr9	97080944	rs150455117	GAGA	G	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-5.118;QD=10.78;ReadPosRankSum=-0.414;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr9	97081795	rs150662309	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr9	97090722	rs7019931	A	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr9	97209066	rs9409546	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr9	97213843	rs4744347	A	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr9	97216541	rs7023744	A	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr9	97218342	rs2277182	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr9	97219678	rs10570184	CTTTT	C	713.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr9	97219735	rs112270671	A	ATT	839.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr9	97221434	rs9409765	G	A	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:82,86:0.51:168
chr9	97321127	rs1048510	T	C	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=0.977;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:32,24:0.43:56
chr9	97329737	rs10657369	C	CAG	1265.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,35:0.39:90
chr9	97329822	rs2987883	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr9	97349666	rs573212	C	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	97365642	rs9695	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr9	97365720	rs1769257	T	C	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	97365985	rs3780554	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr9	97369083	rs2297084	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=8.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=2.196;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr9	97369149	rs1769259	C	T	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.64;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	97369149	.	CTG	TTA,TTG	538	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=12;MQ=60.0;NF=19,43;NR=13,25;PP=407,538;QD=14.3896210894;SC=GTCAAAGTCCCTGGCGTAGCC;SbPval=0.44;Source=Platypus;TC=70;TCF=44;TCR=26;TR=32,68;WE=97369159;WS=97369139;set=Platypus	GT:AF:DP	0/1:0.46:70
chr9	97369151	rs1042144	G	A	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.481;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:46,43:0.48:89
chr9	97372172	rs3739747	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr9	97380043	rs8192689	G	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:161,118:0.42:279
chr9	97426330	.	TA	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=1.577;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr9	97427531	rs4743965	C	A	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	97768286	rs10761364	T	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	97822941	rs1888944	T	C	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	97849090	rs4657	A	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	97873435	rs2404457	G	A	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	97873957	rs4647534	A	G	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	97885616	rs881791	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	97933252	rs3737142	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	98209594	rs357564	G	A	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,71:0.61:117
chr9	98218474	rs5899258	G	GC	2265.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:80,74:0.48:154
chr9	98221861	rs2236406	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	98224360	rs2274692	C	G	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr9	98229389	rs2066829	C	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr9	98230907	rs28711421	T	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr9	98230924	rs35352942	AT	A	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.835;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr9	98231008	rs16909898	A	G	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.188;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:45,43:0.49:88
chr9	98236202	rs16909902	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr9	98238379	rs1805155	A	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr9	98239190	rs574688	G	C	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:69,110:0.61:179
chr9	98239730	rs28448271	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr9	98240120	rs2297086	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr9	98242984	rs2297088	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr9	98268938	.	A	ACGCCCGCTTGCGCGCACC	326.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr9	98270316	rs139100790	TGTGA	T	221.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr9	98278644	rs28591501	C	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr9	98638288	rs690528	A	G	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:64,47:0.42:111
chr9	98678164	rs683829	G	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr9	98694641	rs10760675	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr9	98718088	rs144418885	T	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=6.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.106;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr9	98997810	rs2066479	C	T	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:88,89:0.50:177
chr9	98997910	rs8190570	ATCTTTGTGG	A	1983.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr9	99003264	rs2066485	C	T	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	99013663	rs408876	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	99064202	rs8190483	C	CA	2132.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:134,115:0.46:249
chr9	99064425	rs2066474	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr9	99084181	rs2026002	G	A	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	99086282	rs72621424	C	A	1436.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.536;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.275;QD=26.61;ReadPosRankSum=-0.811;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:1,53:0.98:54
chr9	99086550	rs7038558	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	99160369	.	CAAAA	C	120.94	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.24;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	99220908	rs372291268	CT	C	58.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.35;ReadPosRankSum=-0.921;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr9	99700710	rs201544487	G	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=46.12;MQRankSum=-1.977;QD=9.37;ReadPosRankSum=0.134;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr9	100041610	rs2255135	C	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	100041876	rs2255139	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	100190780	rs1381532	A	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr9	100193113	rs7874295	T	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr9	100194406	rs2045732	T	C	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:123,113:0.48:236
chr9	100201664	rs3214070	G	A	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:100,94:0.48:194
chr9	100227360	rs41316506	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr9	100227423	rs4743099	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr9	100353801	rs2805792	G	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr9	100361864	rs958346	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:66,52:0.44:118
chr9	100366953	rs2805779	A	G	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-1.103;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:73,67:0.48:140
chr9	100388197	rs2773347	C	T	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr9	100430997	rs10712851	TG	T	467.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr9	100433233	rs2805837	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr9	100459578	rs1800975	T	C	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr9	100616583	rs3021523	T	C	9753.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	100617021	rs3021526	C	T	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr9	100617375	rs7046645	T	C	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	100675816	rs1127703	A	G	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr9	100684534	rs10984377	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr9	100684645	rs3824496	C	T	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	100684719	rs3183928	A	C	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	100684757	rs3183927	A	G	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	100689693	rs1059003	A	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr9	100692237	rs79474766	T	TA	940.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	100692330	rs35223978	A	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:70,42:0.38:112
chr9	100700242	rs199724877	C	CT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.722;QD=3.68;ReadPosRankSum=-0.850;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr9	100767530	rs1131641	C	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr9	100774646	rs987142	A	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.303;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr9	100777743	rs76372730	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-1.221;QD=3.53;ReadPosRankSum=0.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr9	100819070	rs3199064	T	G	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=2.807;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	100823084	rs13049	T	C	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	100823135	rs1058446	G	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	100843417	rs4237190	A	G	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	100854765	rs10818475	C	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,27:0.36:76
chr9	100854920	rs4743163	C	A	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	100862339	rs35830621	C	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:103,73:0.41:176
chr9	100862431	.	T	TTGACTCTGCATTAGCC	3663.73	.	AC=1;AF=0.500;AN=2;DP=228;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr9	100881525	rs2761063	C	G	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr9	100889340	rs942165	G	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr9	100963653	rs3739668	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	100965472	rs3739667	C	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	100970881	rs10985441	A	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	100971348	rs3739666	T	C	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	100973178	rs3832623	A	AGAGGCCT	3705.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	100983566	rs7855855	C	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	100991430	rs1573025	C	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr9	100995721	rs879369	A	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr9	100995758	rs879368	G	T	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:117,96:0.45:213
chr9	101006210	rs10818666	T	C	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=0.337;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr9	101006216	rs10818667	A	G	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=8.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=-1.212;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr9	101006436	rs10818668	C	A	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=2.185;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:51,58:0.53:109
chr9	101006443	rs10818669	T	C	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.97;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	101014315	rs140182714	G	GA	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr9	101053076	rs5010004	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr9	101056009	rs10818743	T	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr9	101056122	rs10985765	T	C	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:136,143:0.51:279
chr9	101061639	rs970388	C	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr9	101065807	rs10985795	T	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr9	101068580	rs2304389	G	A	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,70:0.56:126
chr9	101068649	rs2304390	G	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr9	101125148	rs514993	C	T	3970.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:161,180:0.53:341
chr9	101243021	rs2779547	T	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	101243364	rs2808557	T	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	101258881	rs1000440	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr9	101304348	rs2184026	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:91,82:0.47:173
chr9	101340301	rs2808536	A	C	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:111,69:0.38:180
chr9	101340440	rs2808537	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr9	101533220	rs6415847	C	T	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	101539601	rs4742741	G	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	101544627	rs7020056	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	101552955	rs7027771	T	C	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	101553014	rs7038640	G	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	101585444	rs2295922	G	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	101599211	rs3216734	AT	A	629.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr9	101599558	rs10119864	A	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr9	101602171	rs2277189	C	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	101606549	rs1885608	G	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	101748356	rs2075663	A	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr9	101749498	rs2075664	C	A	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:147,137:0.48:284
chr9	101767385	rs41305481	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr9	101778220	rs41283636	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr9	101778265	rs2297603	G	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:80,69:0.46:149
chr9	101778272	rs35250850	A	C	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr9	101796906	rs11281933	T	TCTCCCTC	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	101814626	rs4142986	C	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	101822105	rs75154668	G	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr9	101985090	.	AT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.17;ReadPosRankSum=-0.316;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr9	102068344	rs790287	C	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	102068770	rs7871150	T	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr9	102068832	rs170462	G	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	102068912	rs182704	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr9	102690883	rs6478987	A	G	115.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	102691042	rs145402404	CTTCT	C	1010.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr9	102713580	rs1997368	G	A	7774.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	102713591	rs3739794	T	C	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:124,145:0.54:269
chr9	102780721	rs4743375	T	C	95.84	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr9	102783113	rs3739795	T	C	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=0.377;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr9	102820002	rs942163	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr9	102860928	rs6479001	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr9	103015184	rs2245216	T	C	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:83,87:0.51:170
chr9	103054941	rs76868679	G	A	2163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=4.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.88;ReadPosRankSum=0.816;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:63,58:0.48:121
chr9	103054951	rs2787374	T	C	2119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=0.880;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,55:0.49:113
chr9	103059476	rs7864494	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr9	103060386	rs3813712	T	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:57,74:0.56:131
chr9	103064589	rs41274953	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr9	103108941	rs2151131	C	G	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	103114793	rs1930244	G	C	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	103204577	rs35438121	C	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr9	103207654	rs73655549	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr9	103235853	rs77849433	G	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr9	103260966	.	T	TAC	603.73	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr9	103312290	rs2274882	C	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr9	104124664	rs2229594	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr9	104133628	rs1572983	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr9	104153155	rs10989486	G	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:37,65:0.64:102
chr9	104153189	rs181724877	C	T	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr9	104184022	rs4577	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr9	104187400	rs506571	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr9	104306988	.	T	TA	241.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.839;QD=8.64;ReadPosRankSum=-0.486;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr9	104309445	rs2273976	T	C	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:117,78:0.40:195
chr9	104313898	.	C	CATTATTGATATATATTTTTCTCCTTTTAGATTCTTATAGATCAAATTTAGGAGACAGAATA	500.73	.	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=500.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr9	104324545	rs10521057	G	A	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr9	104341796	rs17774987	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr9	104375538	rs17189821	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr9	104385711	rs10989563	C	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=1.680;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:65,52:0.44:117
chr9	104385711	.	CA	TG	635	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=25;MQ=60.0;NF=14;NR=28;PP=635;QD=16.3920922586;SC=TTCTCTGGATCATTCCTATAT;SbPval=0.78;Source=Platypus;TC=98;TCF=39;TCR=59;TR=42;WE=104385720;WS=104385701;set=Platypus	GT:AD:AF:DP	0/1:56,42:0.43:98
chr9	104385712	rs10989564	A	G	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.68;SOR=1.568;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	104385800	rs10989565	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	104385813	rs10989566	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	104390789	rs10819955	C	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr9	104432293	rs1323434	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	104432873	rs942142	T	G	10479.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.73;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr9	104433034	rs10512285	A	G	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	104433235	rs10989589	C	T	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	104433347	rs13284303	G	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.164;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:59,50:0.46:109
chr9	104433436	rs1885980	T	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	104449063	rs2506354	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chr9	104449098	rs10989591	C	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr9	104449294	rs33945236	G	A	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:102,87:0.46:189
chr9	104499575	rs1337677	T	C	11062.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr9	105405415	rs10820216	G	A	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr9	105757558	rs10739861	A	G	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.164;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:58,48:0.45:106
chr9	105757756	rs1341205	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	105765610	rs2066261	T	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr9	105767983	.	G	A	764.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr9	106857908	rs3739736	G	A	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	106860969	rs10991107	T	C	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	106878318	rs35784229	TCTC	T	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	106885332	rs7350223	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	106885616	rs10991114	A	G	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	106888838	rs146077014	ATTAT	A	376.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	106894211	rs3780535	A	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	106896809	rs7872034	G	A	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	106896874	rs11281153	T	TATATTATAA	1773.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	107266596	rs7049042	T	C	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:94,99:0.51:193
chr9	107266774	rs1949755	C	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:155,113:0.42:268
chr9	107266844	rs1403812	A	G	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:109,108:0.50:217
chr9	107266943	rs1403811	G	A	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:88,116:0.57:204
chr9	107267304	rs7030820	C	T	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:151,140:0.48:291
chr9	107298444	rs41305445	C	T	3810.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:211,180:0.46:391
chr9	107299001	rs41304943	C	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr9	107510145	rs3753024	G	C	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	107510178	rs147856422	AGGGGC	A	2976.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	107515214	rs2274870	G	A	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	107526619	rs62565988	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr9	107531361	rs2472478	T	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	107548493	rs2740485	G	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	107556793	.	T	TAAAA	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.20;ReadPosRankSum=-0.366;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr9	107562804	rs2230808	T	C	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	107566877	rs2777801	C	A	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	107620867	rs2230806	C	T	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr9	107621140	rs2243313	A	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr9	107624029	rs2230805	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr9	108060515	rs2036876	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.085;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr9	108147627	rs2771034	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	108152199	rs2771040	G	A	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	108210665	rs3831166	GCT	G	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.62;ReadPosRankSum=0.967;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr9	108223786	rs10991661	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr9	108268656	.	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-1.172;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr9	108275777	rs10739910	T	C	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	108293042	rs2768278	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr9	108366734	rs34787999	G	A	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.586;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:90,75:0.45:165
chr9	108380355	rs17309806	C	A	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=0.414;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr9	109687288	rs1000152	T	C	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,86:0.47:182
chr9	109688821	.	C	T	4628.77	.	AC=1;AF=0.500;AN=2;DP=439;set=Intersection	GT:AD:AF:DP	0/1:214,221:0.51:435
chr9	109689859	rs3814540	T	C	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:118,129:0.52:247
chr9	109691676	rs3814538	A	G	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:128,101:0.44:229
chr9	110047132	rs10733562	G	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	110047316	rs10739234	A	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	110080967	rs1805332	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	110081018	rs1805335	A	G	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	110084417	rs11573700	G	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr9	110086149	rs1805334	G	A	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	110093970	rs3056494	CA	C	2371.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:27,148:0.85:175
chr9	111616818	rs3750466	T	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	111617650	rs11543179	G	A	1853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.028;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:100,95:0.49:195
chr9	111618163	rs3750468	G	A	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,51:0.41:124
chr9	111625913	rs4978370	A	G	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	111637331	rs1981268	CC	AG	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	111641627	rs2275496	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	111653574	rs1063110	C	G	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	111661947	.	T	TA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.387;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr9	111670513	rs2304779	T	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	111680926	rs35212638	G	GA	251.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=3.222;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=1.960;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr9	111712910	rs2780334	G	C	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	111712924	rs2289481	G	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	111727670	rs7021366	C	G	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	111754288	rs838836	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	111755008	rs2297581	C	T	7407.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	111775502	rs7856626	C	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr9	111782670	rs10816767	G	A	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-1.812;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:26,49:0.65:75
chr9	111798423	rs34730476	TA	T	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.945;QD=6.87;ReadPosRankSum=-0.932;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr9	111798751	rs2256253	C	T	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	111800234	rs534286	G	A	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	111808432	rs7041715	C	G	3284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=0.271;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:88,85:0.49:173
chr9	111808437	rs7041716	C	A	3358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.06;ReadPosRankSum=0.335;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:95,91:0.49:186
chr9	111812825	rs614253	C	T	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr9	111822866	rs3750451	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr9	111843055	rs497196	A	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	111868885	rs2271878	G	A	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:89,73:0.45:162
chr9	111881856	rs1051474	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr9	111881927	rs6825	T	C	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.660;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:57,62:0.52:119
chr9	111882167	rs12001627	G	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr9	111882355	rs10710804	GA	G	135.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr9	111899928	rs10759329	A	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr9	111911775	rs1533641	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr9	111929420	rs10979723	CG	GC	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	111929624	rs75742991	C	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	111936732	rs10733569	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr9	111945049	rs3750450	T	G	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.175;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:77,78:0.50:155
chr9	111945166	rs10122682	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	111962418	rs7864511	G	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr9	112020668	rs745388	T	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr9	112020713	rs893917	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	112025473	rs1982226	C	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	112041925	rs2014890	A	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr9	112042298	rs10979794	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr9	112069477	rs13290752	T	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=0.487;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr9	112082510	rs117569740	C	T	149.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr9	112145935	rs77234379	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr9	112151349	rs1371787	C	T	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	112170701	rs35463120	T	TAAAC	2989.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr9	112172477	rs2275699	T	G	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	112172675	.	G	A	796.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr9	112182649	rs4077728	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr9	112184972	rs111591001	C	CA	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=10.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-0.670;SOR=2.331;set=HC	GT:AD:AF:DP	0/1:34,29:0.46:63
chr9	112199146	rs4978809	A	G	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:94,114:0.55:208
chr9	112199408	rs10979864	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr9	112219474	rs3793524	C	G	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:133,123:0.48:256
chr9	112225531	rs62576448	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr9	112225774	rs2274786	T	C	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-1.119;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:92,95:0.51:187
chr9	112225832	rs3808877	C	G	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr9	112625337	rs10980095	C	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr9	112629397	rs7044189	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr9	112629446	rs13295100	G	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=6.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=2.407;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr9	112629858	rs2769154	A	G	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	112778426	rs723706	A	G	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr9	112778444	rs10116779	A	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	112778461	rs12685739	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr9	112852530	rs10759388	C	T	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr9	112898327	rs1475612	A	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	112899361	rs4978872	A	C	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	112900199	rs914358	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,44:0.36:122
chr9	112900341	rs150402481	G	GGAAGCT	1372.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr9	112900785	rs3739456	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr9	112918531	rs10759392	A	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	112918581	rs7862044	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	112924558	rs2148989	A	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr9	112963504	rs10120707	A	G	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	112963702	rs4978888	G	A	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:130,128:0.50:258
chr9	113006420	rs5843	A	G	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	113006579	.	T	TTATATATATACATATACATATG	2576.73	.	AC=2;AF=1.00;AN=2;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=2.604;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	113007289	rs4135220	T	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	113007319	rs4135219	TGAA	T	2442.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	113091653	rs10980325	A	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr9	113137562	rs138259328	TTCTGAG	T	2910.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:104,78:0.43:182
chr9	113137745	.	TAAAAA	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.55;ReadPosRankSum=1.645;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr9	113139489	rs2274485	C	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr9	113139713	rs7873506	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr9	113139783	rs2077800	G	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	113141815	rs992883	A	G	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	113149405	rs4978921	T	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr9	113151713	rs2296779	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr9	113166697	rs1410049	T	A	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:78,64:0.45:142
chr9	113166792	rs3739451	A	T	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:109,99:0.48:208
chr9	113168344	rs7850488	G	C	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:73,64:0.47:137
chr9	113169126	rs2281937	G	A	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	113169630	rs7046213	TG	CA	4399.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;JOINED;set=Intersection	GT:AD:AF:DP	0/1:117,115:0.50:232
chr9	113192387	rs11331398	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.327;QD=2.79;ReadPosRankSum=-0.734;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr9	113207962	rs7847560	A	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr9	113209424	rs10980390	A	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr9	113212205	rs2095294	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr9	113213726	rs4421419	A	G	2647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.495;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:132,129:0.49:261
chr9	113218098	rs112071235	T	TAAAGA	684.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr9	113220277	rs11405869	T	TG	299.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr9	113233956	rs7860284	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr9	113243438	rs1999598	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr9	113261483	rs872665	C	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chr9	113275444	rs371135144	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.038;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr9	113308284	rs2991363	A	T	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr9	113308525	rs41305611	T	A	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:137,100:0.42:237
chr9	113449271	rs7869057	G	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	113457799	rs35176182	A	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,47:0.46:103
chr9	113459655	rs41279051	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr9	113490776	rs10817087	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	113524511	rs147974075	AT	A	1246.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:61,44:0.42:105
chr9	113547001	rs572189	A	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr9	113547322	rs484010	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	113550168	rs2766999	T	C	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:118,109:0.48:227
chr9	113637662	rs955888	C	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr9	113734610	rs2277179	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr9	113800976	.	C	G	2093.77	.	AC=1;AF=0.500;AN=2;DP=234;set=Intersection	GT:AD:AF:DP	0/1:128,103:0.45:231
chr9	114090279	rs314452	A	G	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:121,116:0.49:237
chr9	114125835	rs2297524	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr9	114134198	rs10980884	C	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr9	114136169	rs7029123	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr9	114146686	rs12350482	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr9	114148496	rs4978994	A	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr9	114155899	rs2598360	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr9	114170785	rs79202070	TA	T	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=1.543;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:55,37:0.40:92
chr9	114174415	rs2418163	T	C	1850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-2.070;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:105,97:0.48:202
chr9	114178402	rs12338500	T	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr9	114193095	rs12348365	A	T	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr9	114202502	rs7860748	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr9	114204735	.	T	A	465.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr9	114301585	rs10441737	C	T	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	114326547	rs7036102	A	G	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-0.615;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:16,23:0.59:39
chr9	114326557	rs199591989	TTTA	T	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.59;ReadPosRankSum=0.277;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	114336894	rs55902909	A	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-1.006;QD=10.49;ReadPosRankSum=0.233;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr9	114337223	rs74587071	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.24;ReadPosRankSum=0.223;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr9	114341239	rs375892629	GA	G	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=1.692;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:104,42:0.29:146
chr9	114348513	rs2273786	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr9	114356659	rs3739703	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	114359624	rs1053959	C	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	114366028	rs966626	T	C	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,64:0.46:139
chr9	114366094	rs966627	G	C	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:101,105:0.51:206
chr9	114371322	rs4978450	T	A,C	2373.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=100;set=Intersection	GT:AF:DP	1/2:0.66,0.34:100
chr9	114371493	rs12351897	C	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.338;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:48,54:0.53:102
chr9	114393784	rs10980984	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr9	114394146	rs10980985	G	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr9	114394177	rs10980986	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr9	114409550	rs4978455	A	G	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	114411945	rs7019332	G	T	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	114449219	rs10537471	CT	C,CTTT	303.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.481;QD=9.80;ReadPosRankSum=-1.769;SOR=2.115;set=HC	GT:AD:AF:DP	1/2:4,19,8:0.61,0.26:31
chr9	114454544	rs7869279	T	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-0.447;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:19,31:0.62:50
chr9	114454580	rs1475110	A	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	114456322	rs113054343	T	TTAAG	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr9	114462322	rs6477845	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	114464487	rs1407390	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	114467442	rs72047905	AAT	A	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	114467478	rs28545063	T	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr9	114468966	rs7036568	A	C	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.823;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:43,46:0.52:89
chr9	114469078	rs10125413	T	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	114475262	rs6477846	T	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	114476748	rs11791445	T	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:106,103:0.49:209
chr9	114480602	rs2418174	C	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr9	114484682	rs1337581	T	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	114484783	rs12352352	A	G	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.364;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:60,71:0.54:131
chr9	114486219	rs12349541	T	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr9	114489887	rs953536	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr9	114490229	rs10512411	T	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=0.642;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:52,40:0.43:92
chr9	114490308	rs7470491	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	114510272	rs10817214	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr9	114520613	rs10981055	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.075;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr9	114521630	rs10817215	A	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr9	114537978	rs440164	A	T	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=7.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=1.138;SOR=2.867;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr9	114543400	rs2786632	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	114659643	rs3780520	A	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.952;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chr9	114659661	rs3780519	A	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=1.409;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr9	114677046	rs140717465	TTTTTG	T	1565.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr9	114686929	rs35471909	TTAAA	T	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr9	114688807	rs72757814	A	G	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,56:0.53:105
chr9	114694486	rs7850023	A	G	1743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.745;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:81,88:0.52:169
chr9	114811154	rs1980739	C	T	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	114919707	rs700105	A	G	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	114937659	rs7024998	C	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	114982463	rs7855745	T	C	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	114982549	rs7869523	C	T	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	114986021	rs34621641	C	CAGAA	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	114990841	rs111362962	T	TTATACTATA	359.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	114990872	rs7026917	C	T	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.64;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	114993508	rs943620	C	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	114993790	rs943621	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	114994271	rs2004269	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=43.34;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	114994276	.	G	A	826.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=45.93;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	114994280	rs372088093	AG	A	800.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=42.14;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	114994285	rs370879653	AG	A	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=43.14;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	114994290	rs370701025	AG	A	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=43.31;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	114994295	rs374007410	AG	A	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=45.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	114994300	.	A	AAAG	799.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=39.99;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	114994305	rs6151125	A	AAAG	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=45.27;SOR=3.334;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	114997288	rs2274519	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	115024695	rs10981334	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	115024971	rs3843823	G	A	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	115030570	rs7870866	C	T	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	115030590	rs4500150	T	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	115038100	rs4979093	T	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	115051546	rs11792085	A	G	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	115052104	rs10121087	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	115060100	rs34861385	A	AC,AAC	1281.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=40;set=Intersection	GT:AF:DP	1/1:1.00:39
chr9	115060682	rs3808881	G	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	115092577	rs2418204	G	A	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	115092624	rs2900539	T	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	115095743	rs7040447	T	C	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	115142330	rs35979933	CG	C	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr9	115142507	rs7867831	A	G	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	115216222	rs10538330	GATTA	G	3557.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	115249262	rs6477940	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	115249433	rs7031191	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	115450093	rs786970	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	115567015	rs139599865	A	ATG	1104.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	115567184	rs1891402	T	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	115580008	rs10117709	G	C	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	115598447	rs6477961	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	115600848	rs7023478	T	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	115652836	rs3802492	G	A	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	115913338	rs143966010	C	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=1.575;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr9	115913589	rs112393959	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.11;ReadPosRankSum=1.579;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr9	115918306	rs10121117	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr9	115919885	rs10122151	G	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.89;ReadPosRankSum=0.660;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr9	115920099	rs4344146	T	C	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	115924932	rs10513187	C	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=1.057;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr9	115928275	rs3810908	T	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	115928566	rs16910202	A	C	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	115931703	rs3810910	G	A	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	115932299	rs7865125	T	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	115934022	rs5900041	A	AACCTGGATT	1540.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	115941144	rs10118914	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	115946500	rs10817454	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	115946892	rs10118429	T	A	6532.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	115950706	rs10435864	A	C	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	115952895	rs12684417	T	C	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	115959199	rs7866432	G	C	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	115961059	rs7874583	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	115961394	rs4407968	C	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	115962377	rs55660432	G	A	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	115965015	rs7034425	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	115965339	rs10568341	GAA	G,GA	1625.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQRankSum=0.303;QD=22.90;ReadPosRankSum=1.721;SOR=0.395;set=HC	GT:AD:AF:DP	1/2:2,40,29:0.56,0.41:71
chr9	115968609	rs4281172	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	115968678	rs1133620	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	115968711	rs1133619	G	A	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	115968797	rs1133618	C	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	115968932	rs142259071	ACAGAAGTGGGAACAACAGTCATTCAGCCTCTAGG	A	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	115968991	rs150300022	AATTTTTTT	A	405.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	115969423	rs4548256	C	T	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	115969433	rs5900043	T	TAGA	2402.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	115969448	rs41280217	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr9	116022860	rs57266996	T	TAC	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-0.524;QD=11.35;ReadPosRankSum=-0.616;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr9	116050720	.	C	CTT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=1.981;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr9	116091342	rs3810921	T	C	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:102,94:0.48:196
chr9	116093126	rs66790147	C	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr9	116116483	rs10981762	A	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr9	116116626	rs10981763	C	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,50:0.49:103
chr9	116122954	rs752757	A	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr9	116124454	rs58536514	GGTGTGT	G	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=0.154;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr9	116124523	rs7041125	C	G	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	116130510	rs113186853	ATC	A	3236.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:68,85:0.56:153
chr9	116131869	rs10115141	G	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr9	116131873	rs3827661	A	C	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr9	116151191	rs1805313	A	G	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:65,72:0.53:137
chr9	116153352	rs2761016	T	C	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr9	116153900	rs1139488	A	G	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.618;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:105,89:0.46:194
chr9	116155669	rs72217268	T	TCCCCAA	713.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.121;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=30.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.301;SOR=4.196;set=HC	GT:AD:AF:DP	0/1:57,22:0.28:79
chr9	116183301	rs818714	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr9	116186544	rs41313331	A	G	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:95,90:0.49:185
chr9	116191169	rs72760093	A	G	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr9	116224171	rs143610280	CT	C	513.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr9	116241707	rs7021491	T	C	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:85,95:0.53:180
chr9	116246535	rs12335991	C	G	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=5.356;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.938;QD=11.26;ReadPosRankSum=0.739;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:42,50:0.54:92
chr9	116246610	.	AAAAAAAAAAAAAAAAAAAACCAAAAC	A	159.84	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=31.97;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	116259439	rs12345968	G	A	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr9	116264014	rs6478016	T	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr9	116267829	rs72761971	A	G	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:76,68:0.47:144
chr9	116269520	rs7870265	T	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr9	116270976	rs10125960	C	A	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr9	116279701	rs72761985	G	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr9	116279880	rs35270441	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr9	116280103	rs7026656	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr9	116285083	rs12344578	T	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr9	116285429	rs7037441	T	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr9	116291390	rs55977108	C	T	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr9	116327691	rs143559895	T	TAGG	598.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr9	116345565	rs12343129	C	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr9	116346118	rs41305473	G	A	9492.77	.	AC=1;AF=0.500;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	0/1:348,438:0.56:786
chr9	116346236	rs41301525	G	A	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:152,138:0.48:290
chr9	116356516	rs12341266	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:86,94:0.52:180
chr9	116356776	rs61749208	C	T	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr9	116356858	rs148080000	TC	T	695.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr9	116764283	rs4978561	C	T	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:126,134:0.52:260
chr9	116764832	rs148995274	TTTTGCAC	T	5305.73	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:163,141:0.46:304
chr9	116764883	rs3034072	C	CCT	4441.73	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:180,153:0.46:333
chr9	116765062	rs942286	G	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr9	116769515	rs4979321	C	T	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	116770776	rs3748183	C	T	4330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.67;ReadPosRankSum=0.216;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,114:0.60:191
chr9	116770785	rs3748182	G	A	4179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.88;ReadPosRankSum=1.059;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:81,110:0.58:191
chr9	116770918	rs10817552	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr9	116778269	rs4979324	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	116791161	rs7030167	T	C	4257.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:201,209:0.51:410
chr9	116794784	rs2116407	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr9	116822610	rs2269456	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.21;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	116822620	rs2269455	G	A	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-1.803;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:34,47:0.58:81
chr9	116822650	rs2269454	T	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-0.707;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:26,33:0.56:59
chr9	116840204	rs2251680	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,43:0.50:86
chr9	116840338	rs2285056	C	T	4712.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:220,222:0.50:442
chr9	116854183	rs117751044	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr9	116856889	rs1465660	A	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	116857656	rs7036734	T	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr9	116858625	rs6478062	T	G	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:119,109:0.48:228
chr9	116859769	rs3810929	T	C	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr9	116860516	rs57239538	TG	T	545.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr9	116860731	.	A	AGCGGGGCACTCTGGAGGAGG	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.645;QD=20.73;ReadPosRankSum=-1.639;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr9	116860781	rs72383355	TGGA	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-0.765;QD=12.86;ReadPosRankSum=1.141;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr9	116945454	rs10759688	A	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	116958216	rs2567711	C	T	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	116967263	rs2567719	T	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	116967952	rs2567720	T	C	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	116980052	rs10982110	C	T	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	116997994	rs2015408	T	C	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	117002517	rs2014134	C	T	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:164,148:0.47:312
chr9	117026581	rs4978576	C	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr9	117027165	rs41312228	A	G	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr9	117033096	rs2636866	C	T	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:129,154:0.54:283
chr9	117037820	rs10513241	A	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr9	117037915	rs12685514	T	C	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=1.462;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:77,83:0.52:160
chr9	117044458	rs1628968	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr9	117044484	rs72762668	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr9	117044538	rs2636879	G	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:96,76:0.44:172
chr9	117044751	rs2787330	T	C	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	117046170	rs1565502	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:52,68:0.57:120
chr9	117051020	rs1687410	A	G	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:95,104:0.52:199
chr9	117051271	rs10817583	C	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:62,53:0.46:115
chr9	117051614	rs1249742	A	G	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.754;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:41,49:0.54:90
chr9	117052738	rs11386651	G	GT	248.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr9	117054195	rs10429546	C	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr9	117054542	rs7855288	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr9	117064345	rs1546048	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr9	117064405	rs10817586	C	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	117066823	rs10817590	C	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	117072656	rs1000744	C	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	117073006	rs1249756	C	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	117085526	rs147960186	G	A	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.745;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-0.897;QD=10.34;ReadPosRankSum=1.295;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:50,45:0.47:95
chr9	117085635	rs74594458	T	C	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr9	117086226	rs1111796	A	G	8964.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr9	117093729	rs10759691	A	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr9	117103973	rs2250242	A	G	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=1.299;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr9	117106190	rs3748179	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr9	117121840	rs2787348	A	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	117122202	rs3748177	C	T	3087.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:160,154:0.49:314
chr9	117124519	rs2636901	A	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.996;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr9	117124731	rs3748176	G	A	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:58,69:0.54:127
chr9	117127034	rs2787351	C	G	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	117138278	rs4979371	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr9	117150070	rs1324632	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr9	117150302	rs1886377	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr9	117166246	rs2274159	A	G	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:121,141:0.54:262
chr9	117166338	rs6478078	G	C	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr9	117168551	rs10982200	C	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr9	117169033	rs942519	A	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr9	117186677	rs4979387	A	G	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	117188566	rs10817610	C	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	117266337	rs35122928	TA	T	1051.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.645;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.506;QD=12.09;ReadPosRankSum=1.811;SOR=1.645;set=HC	GT:AD:AF:DP	1/1:13,74:0.85:87
chr9	117390224	rs62579680	C	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr9	117396237	rs3810935	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr9	117399263	rs41278669	C	T	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,89:0.49:180
chr9	117405645	rs41278673	T	G	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,58:0.46:126
chr9	117552885	rs3810936	T	C	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	117553249	rs4246905	T	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	117554504	rs142936750	TACACACACAC	T	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	117568049	rs7030574	C	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	117782836	rs34490502	T	TA	168.70	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr9	117783551	rs5900112	TA	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.386;QD=2.79;ReadPosRankSum=-0.157;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr9	117791617	rs12346540	T	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr9	117792426	rs13286441	G	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr9	117792583	rs13321	C	G	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:81,98:0.55:179
chr9	117797359	rs3215885	A	AT	32.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr9	117797597	rs12347433	T	C	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=1.243;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr9	117800417	rs2274751	T	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr9	117803185	rs35141770	A	AACAC	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr9	117808785	rs2104772	T	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chr9	117819389	rs12348090	A	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr9	117819748	rs139652669	GTTAA	G	1228.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr9	117836188	rs2210108	A	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr9	117838624	rs2274835	C	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr9	117840061	rs2988577	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.68;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	117840334	rs61739209	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:63,68:0.52:131
chr9	117844239	rs2989519	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	117846450	rs1755639	A	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	117846580	rs1061494	T	C	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr9	117848112	rs1617917	A	T	6229.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	117848394	rs1757095	T	C	10738.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr9	117849314	rs2992147	T	C	12855.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr9	117853022	rs944510	C	T	11683.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr9	118163563	rs2269700	C	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.433;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:54,46:0.46:100
chr9	118969686	rs11268296	T	TTATTTAAATAG	469.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr9	118989926	rs13290387	G	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr9	119094545	rs731146	A	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr9	119094789	rs56276527	A	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,44:0.39:114
chr9	119106881	rs7020782	C	A	4499.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.114;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.47;ReadPosRankSum=1.551;SOR=0.318;set=HC	GT:AD:AF:DP	1/1:1,169:0.99:170
chr9	119125082	rs3747828	G	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr9	119158814	rs8456	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:89,50:0.36:139
chr9	119160758	rs146823201	T	TA	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=7.558;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.002;QD=5.58;ReadPosRankSum=-1.041;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr9	119160791	rs3810939	T	C	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-1.080;QD=10.42;ReadPosRankSum=-0.667;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:48,58:0.55:106
chr9	119187839	rs7518	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr9	119188495	rs4836708	T	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr9	119199485	rs7034542	T	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	119199727	rs10983157	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr9	119199820	rs7018569	C	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	119204638	rs2302827	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr9	119382768	rs2295741	A	G	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:73,78:0.52:151
chr9	119461275	rs1661300	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:74,57:0.44:131
chr9	119462112	rs3019	C	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	119495697	rs7863560	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	119582872	rs3765537	T	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr9	119738890	rs2274762	T	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr9	119770480	rs3761845	C	T	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:76,74:0.49:150
chr9	119770551	rs7036098	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	119903506	rs10817999	C	T	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	119903807	rs57782747	A	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	119977077	rs4543613	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr9	120053776	rs7848630	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	120466929	rs5900307	CA	C	602.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.519;QD=13.39;ReadPosRankSum=0.277;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:7,38:0.84:45
chr9	120471058	rs2770148	G	A	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	120475468	rs56070048	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr9	122257627	rs10984560	C	T	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr9	123151679	rs4836820	A	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	123152099	rs2297457	C	G	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	123152241	rs2297456	A	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	123156761	rs4410972	G	C	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	123170733	rs4837768	C	G	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	123280950	rs2095064	T	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	123291036	rs4836822	C	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	123313246	rs954214	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	123330813	rs4837782	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	123342259	rs932975	C	A	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	123342275	rs932974	A	G	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	123370345	rs991121	C	G	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	123374639	rs2416760	T	C	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	123476542	rs369989873	ACGGCGG	A	5270.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	123550027	rs7026635	G	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:83,100:0.55:183
chr9	123583192	rs1060817	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr9	123586581	rs35903891	CA	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.295;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr9	123586737	rs10760117	T	G	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:161,141:0.47:302
chr9	123625018	rs41273392	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr9	123631642	rs3753029	G	C	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:73,98:0.57:171
chr9	123632045	rs1056567	A	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:42,54:0.56:96
chr9	123632829	rs4836833	G	C	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:102,101:0.50:203
chr9	123636121	rs10985070	C	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.40;ReadPosRankSum=-0.238;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	123670505	rs7866003	A	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr9	123671520	rs2239657	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr9	123676396	rs2416804	G	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr9	123676482	rs2416805	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr9	123734287	rs3217100	GAAAC	G	3405.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:73,88:0.55:161
chr9	123737018	rs2269066	C	T	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr9	123737040	rs2269067	G	C	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:64,70:0.52:134
chr9	123751800	rs3764912	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	123758425	rs10760134	T	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr9	123760086	rs34704763	AT	A	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr9	123762336	rs201981532	C	CAA	66	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	123769200	rs17611	C	T	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=0.212;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:42,37:0.47:79
chr9	123780005	rs25681	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:95,77:0.45:172
chr9	123783934	rs10985126	T	C	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:138,122:0.47:260
chr9	123783993	rs10985127	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr9	123785545	rs28426093	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr9	123787697	.	T	TACACACACACAC,TACACACAC	491.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	1/1:1.00:8
chr9	123792906	rs3815467	G	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-0.449;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr9	123800094	rs10818499	T	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr9	123800218	rs17216529	C	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr9	123850770	rs10818503	G	A	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:116,122:0.51:238
chr9	123860689	rs10818504	C	T	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:75,87:0.54:162
chr9	123888242	rs10760150	G	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr9	123908345	rs7023214	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr9	123917020	rs3736855	T	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.840;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr9	123917355	rs10818512	A	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr9	123923411	rs139754979	A	AGT	1230.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:65,43:0.40:108
chr9	123924667	rs10586591	CAT	C	662.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr9	123927477	rs4836841	T	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:59,47:0.44:106
chr9	123928486	rs2273988	T	C	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-1.152;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:32,49:0.60:81
chr9	123928569	rs1535655	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr9	123929710	rs10818513	A	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,43:0.44:97
chr9	123937601	rs3789310	T	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr9	123939336	rs3838267	T	TA	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr9	123943884	rs2296078	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr9	123945505	rs3215744	C	CA	633.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:48,40:0.45:88
chr9	123955756	rs10818516	G	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.12;ReadPosRankSum=1.047;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr9	123955765	rs6478504	A	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.70;ReadPosRankSum=2.549;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr9	124043867	rs10985200	C	T	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:157,153:0.49:310
chr9	124048298	rs12683459	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr9	124065516	rs12685309	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr9	124073176	rs306785	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	124074791	rs78498965	T	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr9	124088768	rs306769	T	C	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr9	124089173	rs216784	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	124091135	rs306771	G	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	124218133	rs3747845	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	124222267	rs2289068	A	G	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	124519214	rs55835505	A	G	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr9	124632735	rs4384052	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr9	124633096	rs4370602	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:41,66:0.62:107
chr9	124736218	rs35609526	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr9	124751361	rs41277110	A	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr9	124794020	rs61740840	G	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr9	124854880	rs10818624	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	124855211	rs61742319	C	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	124855330	rs201653732	G	GTGGCCT	1054.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr9	124882474	rs6478557	A	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr9	124895467	rs12380610	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	124895500	rs10985546	A	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	124906723	rs3818638	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	124910582	rs3793616	C	A	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr9	124914613	rs4679	C	T	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	124929006	rs2274747	G	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr9	124929211	rs1411444	A	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr9	124976475	rs62574050	C	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	124990773	rs113188211	C	CG	524.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr9	125084641	.	CA	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.000;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr9	125133479	rs1236913	T	C	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	125133507	rs3842787	C	T	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:109,116:0.52:225
chr9	125144145	rs1238420	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	125377087	rs972925	A	G	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr9	125377505	rs1329957	A	G	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	125378014	rs7470572	T	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	125390874	rs1556189	A	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	125391026	rs1476858	A	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	125391369	rs1536929	A	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	125391409	rs1536928	A	G	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	125391770	rs11421222	C	CA	1367.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	125391917	rs1329951	A	G	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	125391940	rs7037571	C	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	125438390	rs138897879	G	GGT	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.73;ReadPosRankSum=0.871;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr9	125486968	rs2215530	G	A	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	125511991	rs184509332	A	G	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=16.936;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.738;QD=3.08;ReadPosRankSum=1.979;SOR=2.381;set=HC	GT:AD:AF:DP	0/1:79,45:0.36:124
chr9	125512193	rs10760252	C	A	10274.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr9	125512575	rs4838012	G	A	11372.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr9	125512770	rs10985760	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.27;QD=28.27;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	125512788	rs10818740	G	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.91;QD=45.68;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	125512795	rs10818741	G	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.97;QD=42.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	125512826	rs28670025	G	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	125562527	rs10985782	T	C	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:90,57:0.39:147
chr9	125620105	rs5900549	C	CA	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	125637471	rs2596699	A	T	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	125637648	rs2596698	T	C	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	125659520	rs2793005	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	125673051	rs1147321	T	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	125747038	rs614274	G	T	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	125759861	rs138316961	TTTTC	T	803.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=42.30;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	125760863	rs587364	T	C	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	125761051	rs605546	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	125797918	rs369720245	CGTGTGTGTGTGTGT	C,CGT	641.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.11;SOR=3.258;set=HC	GT:AD:AF:DP	1/2:0,6,10:0.38,0.62:16
chr9	125832879	rs803733	T	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	125861695	rs700080	T	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	125861888	rs700081	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	125863896	rs145451585	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:80,53:0.40:133
chr9	125920376	rs803736	G	A	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	125922854	rs11437080	C	CA	530.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr9	125932152	rs147443012	C	CAT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.324;QD=1.75;ReadPosRankSum=-0.601;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:86,15:0.15:101
chr9	126028395	rs7863265	C	G	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	126118517	rs72433015	AGCAGAGC	A	1403.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	126118600	rs12551047	C	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-1.082;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:56,31:0.36:87
chr9	126125318	rs2808415	C	A	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr9	126128211	rs1105223	T	C	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr9	126128253	rs1105222	G	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr9	126128654	rs4838052	G	A	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=1.580;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:34,33:0.49:67
chr9	126128679	rs11790447	G	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr9	126129351	rs10760281	G	A	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr9	126129751	rs201080656	CCT	C	177.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr9	126129904	rs10818812	C	T	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.243;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:29,31:0.52:60
chr9	126131110	rs2488603	T	C	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	126131161	rs10760282	G	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.206;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr9	126133547	rs2488602	T	C	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr9	126134542	rs61740213	G	A	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:181,168:0.48:349
chr9	126135715	rs2488601	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	126139065	rs10760283	G	A	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	126139148	rs138303512	T	C	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=-1.503;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr9	126144746	rs2491348	T	C	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	126144758	rs2808409	T	C	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	126145907	rs2797946	C	A	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	126146197	rs2808411	C	G	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	126202551	rs10739633	A	C	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	126217128	.	C	CT	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-0.431;QD=9.41;ReadPosRankSum=1.622;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr9	126220283	rs71390436	C	CT	485.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=0.420;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr9	126439100	rs12377595	T	G	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.173;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=1.019;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:45,62:0.58:107
chr9	126520068	rs9785285	T	C	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-1.791;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:70,53:0.43:123
chr9	126531755	rs1778890	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr9	126641091	rs670028	A	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr9	127032607	rs1045774	A	G	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr9	127075021	rs2274780	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr9	127083725	rs10760352	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:117,112:0.49:229
chr9	127089775	rs748741	A	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr9	127101924	rs10760354	C	T	9164.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr9	127116102	rs10818946	T	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr9	127177161	rs4574	A	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr9	127177736	rs2236386	G	C	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr9	127214346	rs77095338	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr9	127214450	rs75828435	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:68,84:0.55:152
chr9	127215145	rs11998752	G	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	127215344	rs7861556	A	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	127215772	rs72616654	C	G	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-1.506;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:67,37:0.36:104
chr9	127215778	rs67997410	C	T	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-2.088;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:66,36:0.35:102
chr9	127217284	rs77622235	G	A	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr9	127220952	rs12347840	T	C	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:155,136:0.47:291
chr9	127228596	rs4838184	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:54,55:0.50:109
chr9	127228824	rs4838185	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr9	127230118	rs10818977	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr9	127230891	rs10760365	G	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,50:0.47:107
chr9	127231774	rs1570580	C	G	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:144,134:0.48:278
chr9	127239263	.	CCT	C	4262.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=222;set=Intersection	GT:AD:AF:DP	0/1:110,111:0.50:221
chr9	127239266	.	C	A	4271.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=223;set=Intersection	GT:AD:AF:DP	0/1:110,112:0.50:222
chr9	127244955	rs915034	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr9	127245412	rs7037254	C	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr9	127255448	rs2297605	G	A	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:87,117:0.57:204
chr9	127495508	rs10760374	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr9	127557152	rs7856071	G	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr9	127561559	rs2281923	C	T	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	127563364	rs913231	G	A	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	127566378	rs7874348	A	G	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:107,104:0.49:211
chr9	127572710	rs7020260	C	G	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	127618776	rs2274970	A	G	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	127618839	rs10760381	C	G	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	127619553	rs10819000	C	G	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	127619625	rs35041146	G	GC	1999.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	127619922	rs944952	T	C	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	127620480	rs10593927	CAT	C	1079.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	127637215	rs581558	T	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	127644882	rs596231	G	A	8195.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	127661521	rs750884	T	C	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	127661526	rs750883	A	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	127674200	rs583134	A	C	5745.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	127733926	rs2289631	C	T	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	127757310	rs6478690	C	T	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	127765856	.	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.17;ReadPosRankSum=-0.423;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:157,28:0.15:185
chr9	127765978	rs4837005	T	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr9	127781259	rs1017530	G	A	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr9	127818298	rs11792367	C	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:75,78:0.51:153
chr9	127904740	rs974826	G	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr9	127934350	rs2416954	A	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr9	127951072	rs57163595	C	CAATAATAATAAT	149.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr9	127951863	rs466994	G	A	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.257;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:67,43:0.39:110
chr9	127962916	rs501963	G	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr9	127962972	rs10986636	G	A	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:145,152:0.51:297
chr9	127965400	rs59356323	A	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,51:0.46:111
chr9	127969785	rs420423	G	A	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr9	127969830	rs55736103	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:43,64:0.60:107
chr9	127975583	rs359588	T	C	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	127975654	rs1128362	C	T	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr9	127982775	rs35811664	CT	C	6293.73	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:171,191:0.53:362
chr9	127999166	rs56136100	T	C	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:130,125:0.49:255
chr9	128002626	rs17253433	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr9	128074807	rs432757	T	C	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	128086212	rs41305469	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr9	128113253	rs72767063	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr9	128201098	rs7864593	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	128206717	rs907501	C	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr9	128327891	rs545320	A	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	128711809	rs13298715	A	G	1044.10	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:3,40:0.93:43
chr9	128724304	rs888230	A	C	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	129097817	rs1230752	G	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	129102840	rs1888156	G	A	1789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=0.021;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:86,91:0.51:177
chr9	129143242	rs917778	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	129143315	rs917777	A	G	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	129158002	rs722538	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr9	129184258	rs73595697	C	T	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:149,120:0.45:269
chr9	129184309	rs887659	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:65,74:0.53:139
chr9	129265334	rs28641758	C	T	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:86,66:0.43:152
chr9	129265397	rs45520335	G	A	7230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-0.691;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:198,189:0.49:387
chr9	129265406	rs112277604	T	G	7619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.06;ReadPosRankSum=-0.309;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:214,208:0.49:422
chr9	129265612	rs3814128	C	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr9	129377855	rs1336980	G	C	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:163,159:0.49:322
chr9	129453229	rs2277158	A	G	2336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-0.446;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:115,113:0.50:228
chr9	129455587	rs13295990	G	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr9	129595895	rs3118994	T	C	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:63,73:0.54:136
chr9	129728336	rs480796	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr9	129740101	rs10819259	G	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:81,109:0.57:190
chr9	129831455	rs3832609	AC	A	740.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr9	129831659	rs1281158	T	A	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	129851156	.	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=5.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.923;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr9	129854199	rs2297866	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:76,55:0.42:131
chr9	129928600	rs946430	A	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	129930892	rs2297865	A	G	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr9	129940379	rs3739556	T	C	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr9	130073842	rs181246481	C	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:50,70:0.58:120
chr9	130075672	rs2779714	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr9	130080231	rs56067901	G	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr9	130082872	rs3739558	A	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr9	130083140	rs3739557	T	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr9	130087508	rs62578844	C	T	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,52:0.47:110
chr9	130100305	rs3802370	G	A	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	130106778	rs7863063	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	130117861	rs58473776	C	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	130149403	rs4837149	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	130155257	rs4074695	T	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	130155331	rs7864853	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	130160769	rs10987633	G	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	130164818	rs3802367	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	130165973	rs34064803	T	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:104,96:0.48:200
chr9	130166382	rs10819287	C	G	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	130167338	rs41302651	C	T	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	130167390	rs3824413	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	130168326	rs10987637	C	T	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	130169301	rs4075850	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	130169874	rs6635	A	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	130191186	rs13292096	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	130197225	rs3923308	G	A	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	130197414	rs4504745	A	G	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	130198100	rs7853047	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	130198342	rs4500179	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	130206295	rs142661397	AT	A	1911.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	130206762	rs2248025	C	T	14674.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr9	130210111	rs1139400	T	C	11176.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr9	130210946	rs2247573	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	130212876	rs2247322	T	A	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	130213508	rs2244624	A	G	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	130216951	rs2244218	G	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	130219669	rs2243906	C	T	10050.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr9	130219743	rs2243903	T	C	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	130221388	rs2243767	T	C	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	130236243	rs2250267	G	A	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	130241374	rs56957982	G	GCA	2970.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	130241822	rs1539569	T	C	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	130242109	rs1539568	C	T	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	130242166	rs1539567	A	G	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	130243534	.	A	AT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.071;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr9	130251512	rs2245677	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	130253286	rs5900748	G	GA	1141.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	130258160	rs2249052	A	T	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	130259618	rs2248822	A	C	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	130269786	rs2245051	A	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	130286150	rs2251409	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	130289615	rs2243558	C	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.463;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	130331257	rs151147273	CCCGCTCCCG	C	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	130341095	rs4240419	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	130341253	rs4240420	A	G	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	130423271	rs372510099	CA	C	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=1.609;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:70,29:0.29:99
chr9	130446493	rs4836575	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	130455501	rs113380497	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr9	130457332	rs71872103	TTGATGATGA	T,TTGATGATGATGA	3108.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.52;MQRankSum=0.367;QD=37.45;ReadPosRankSum=1.608;SOR=1.368;set=HC	GT:AD:AF:DP	1/2:1,50,32:0.60,0.39:83
chr9	130475011	rs522328	T	C	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,228:0.99:230
chr9	130475442	rs497632	A	C	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:120,119:0.50:239
chr9	130477160	rs550045	G	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr9	130477768	rs504434	G	A	4331.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:206,194:0.48:400
chr9	130485618	rs537881	G	A	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr9	130486384	rs836333	C	T	1129.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-3.011;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.04;ReadPosRankSum=-0.610;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr9	130486385	rs35761147	G	GC	433.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.751;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-0.967;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr9	130486915	rs2256139	T	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	130488494	rs538927	C	T	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	130489189	rs578997	C	T	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	130489375	rs147232063	C	G	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,62:0.50:123
chr9	130489558	rs472144	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	130489743	rs13298768	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr9	130491726	rs555022	T	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	130491998	rs557630	A	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	130492039	rs557749	G	A	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	130493513	rs482095	A	G	4182.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	130493724	rs505268	C	T	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	130494667	rs534652	G	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	130494811	rs515182	T	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	130494957	rs538066	T	C	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	130495633	rs564754	C	G	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	130495890	rs3739812	A	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	130496415	rs482712	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	130497293	rs7867296	G	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.55;ReadPosRankSum=1.507;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr9	130497591	rs7848592	C	T	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr9	130502062	rs373114224	G	A	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=0.334;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:28,47:0.63:75
chr9	130502238	rs7852090	T	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr9	130504070	rs514024	G	A	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:83,91:0.52:174
chr9	130509439	rs2233505	A	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr9	130511981	rs2233502	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr9	130512071	rs2233500	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr9	130517223	rs142611303	T	C	1516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.50;ReadPosRankSum=0.303;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:32,42:0.57:74
chr9	130517229	rs150141711	G	C	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.62;ReadPosRankSum=-0.211;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:29,40:0.58:69
chr9	130523904	rs35019975	T	C	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=2.185;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:108,80:0.43:188
chr9	130524592	rs77042330	C	T	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:120,160:0.57:280
chr9	130524817	rs3962613	C	T	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	130533361	rs60419096	T	C	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:199,155:0.44:354
chr9	130533559	rs115856106	G	T	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:53,75:0.59:128
chr9	130536717	rs10760500	G	A	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=4.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.368;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:58,57:0.50:115
chr9	130548589	rs11403971	G	GC	1081.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr9	130550044	rs3217740	C	T	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	130551120	rs114465623	A	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr9	130565267	rs10760502	A	G	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	130571225	.	AT	A	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.833;QD=6.61;ReadPosRankSum=0.389;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr9	130572123	rs7027767	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	130578280	rs41358947	A	G	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-1.144;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:55,38:0.41:93
chr9	130578404	rs10760503	A	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	130579599	rs1330684	C	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr9	130630233	rs4226	G	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.279;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr9	130630430	rs6478799	A	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr9	130630639	rs913986	A	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	130634944	rs743537	T	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr9	130635540	rs2767398	A	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	130648680	rs913983	G	A	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	130649111	rs4837202	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	130657020	rs5900777	GC	G	1796.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	130670652	rs1043012	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	130670903	rs10760511	C	A	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	130672106	rs7026378	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	130672221	rs10739700	C	T	10278.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr9	130674756	rs35701259	G	C	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:128,128:0.50:256
chr9	130688401	.	CTCTT	C	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=0.906;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr9	130690412	rs10760515	G	C	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	130690510	.	G	T	746.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr9	130693190	rs77794990	C	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr9	130698029	rs7997	G	C	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:92,57:0.38:149
chr9	130698043	rs6781	A	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr9	130699917	rs2274424	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr9	130700251	rs6478802	T	C	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr9	130707081	rs2274426	A	G	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:168,129:0.43:297
chr9	130710726	rs4837212	A	G	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	130710791	rs4837213	T	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr9	130715922	rs2417062	A	G	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	130829039	rs1539350	A	G	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	130854127	rs10739712	A	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	130860866	rs947624	T	C	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	130861039	rs947623	A	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	130864676	rs7859709	T	C	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr9	130868312	rs7864867	G	C	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	130868831	rs1418420	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	130869499	rs4837239	A	T	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	130883511	rs2040004	C	T	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	130886906	rs4837241	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	130889571	rs4837242	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	130889600	rs4837243	C	T	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	130889705	rs4837244	G	A	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	130890449	rs11283643	A	AGGTGCGCGGC	9752.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	130911830	rs147787222	G	T	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:66,83:0.56:149
chr9	130914170	rs11794980	C	G	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	130914434	rs2232629	A	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	130922952	rs1539351	G	C	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	130932396	rs144699223	AAC	A	6386.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	130940121	rs4075428	G	A	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	130940822	rs3892074	C	T	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.52;SOR=2.117;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	130940822	.	CTTCTCCG	TTTCTCCA,TTTCTCCG	743	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=28;MQ=60.0;NF=8,25;NR=21,63;PP=486,743;QD=18.6023405125;SC=CAAGAGCTGCCTTCTCCGTCC;SbPval=0.62;Source=Platypus;TC=89;TCF=26;TCR=63;TR=29,88;WE=130940837;WS=130940812;set=Platypus	GT:AF:DP	0/1:0.33:89
chr9	130940829	rs45442592	G	A	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.457;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:44,37:0.46:81
chr9	130942972	rs45585631	T	C	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	130984809	rs35048348	C	T	7815.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	131001692	rs10987942	G	C	12556.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr9	131001846	.	CGTGTGT	C,CGT	2749.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.03;QD=35.71;SOR=1.498;set=HC	GT:AD:AF:DP	1/2:0,52,25:0.68,0.32:77
chr9	131015279	rs2267958	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr9	131027982	rs7871866	G	C	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr9	131038324	rs146186513	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr9	131040842	.	C	CA	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=2.242;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:35,25:0.42:60
chr9	131040874	rs56203622	T	C	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:79,46:0.37:125
chr9	131085373	rs3003601	G	C	7138.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	131087396	rs193059719	A	G	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:119,122:0.51:241
chr9	131094380	.	CGGGCCCT	C	2215.73	.	AC=1;AF=0.500;AN=2;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,59:0.44:134
chr9	131095112	rs7850697	A	C	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=1.504;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:59,53:0.47:112
chr9	131190444	rs112220391	G	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr9	131193665	rs1009850	A	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr9	131218213	rs10819384	G	A	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	131222541	rs6478832	A	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	131235321	rs4512487	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	131245175	.	CTT	C,CT	1033.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.471;QD=8.61;ReadPosRankSum=1.236;SOR=0.794;set=HC	GT:AD:AF:DP	1/2:30,41,49:0.34,0.41:120
chr9	131250084	rs372216616	AC	A	3502.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=43.78;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	131250086	rs148902913	AC	A	3265.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;QD=39.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	131255236	rs62584804	C	T	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:73,82:0.53:155
chr9	131287352	rs10988014	C	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	131300143	rs7048583	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	131331320	rs2152833	C	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	131337389	rs2297768	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	131337661	rs2297769	A	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	131340306	rs4837280	A	G	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	131340639	rs1890103	T	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	131344607	rs5900808	GA	G	448.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	131346218	rs10760566	A	C	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	131346479	rs4240431	A	G	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	131347165	rs4836615	G	A	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	131347169	rs4837284	C	T	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=1.586;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	131350112	rs4837286	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	131360750	rs2227864	C	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	131374165	rs7024498	C	G	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	131375701	rs1415568	A	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	131379967	rs2227862	C	T	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	131380149	rs3750332	C	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	131380994	rs4837290	T	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	131388643	rs3737308	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	131389060	rs10694437	C	CAA	1302.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	131392522	rs41308912	C	T	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.422;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:47,42:0.47:89
chr9	131392553	rs7866175	G	A	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	131397479	rs4837291	G	A	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	131398343	rs947182	T	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	131398636	rs10760570	C	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	131403096	rs2298045	A	G	7679.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	131418828	rs4837292	A	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	131452121	.	C	CG	637.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	131452126	.	GCC	G	637.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	131452137	.	CG	GG	99	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=36;MMLQ=19;MQ=58.37;NF=20,0;NR=17,3;PP=92,99;QD=3.18918918919;SC=CCGCGGCGGCCGCGCTGCGAG;SbPval=0.6;Source=Platypus;TC=38;TCF=20;TCR=18;TR=37,3;WE=131452145;WS=131452111;set=Platypus	GT:AD:AF:DP	0/1:53,3:0.05:56
chr9	131452137	.	CG	CGG	711.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AF:DP	1/1:1.00:17
chr9	131453331	rs4837293	G	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	131455760	rs10739728	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	131455903	rs4836618	C	T	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	131456385	rs10637043	G	GTA	1237.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:6,42:0.88:48
chr9	131465167	rs1572915	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	131465284	rs3750321	G	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr9	131468251	rs1572916	T	C	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	131475951	rs4837297	T	C	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	131477544	rs7854055	G	A	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	131479023	rs10739729	T	C	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	131482467	rs3750325	T	C	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	131483749	rs2900268	T	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	131484526	rs10988105	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr9	131493541	.	G	A	180.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr9	131502112	rs2298044	A	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	131502440	rs3818931	G	C	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	131502460	rs7027146	G	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	131505092	rs10739731	A	C	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	131515547	rs8507	G	T	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.264;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:55,39:0.41:94
chr9	131550722	rs1891076	C	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	131553768	rs10760577	A	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	131568363	rs2417127	A	G	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr9	131570178	rs45609236	T	C	8439.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	131570183	rs7862546	C	G	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.09;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	131580998	rs2293969	C	T	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	131583170	rs2280845	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	131585069	rs2280843	A	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	131585205	rs2997919	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	131585216	rs2977994	G	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	131585994	rs2997918	T	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	131586005	rs41275920	C	T	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,68:0.56:122
chr9	131586913	rs4836630	A	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=0.688;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr9	131586918	rs2997917	G	A	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.41;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	131587240	rs2293968	G	A	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	131588652	rs2997914	T	C	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr9	131589234	rs2977991	C	G	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	131592193	rs2997906	T	C	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	131599008	rs2759009	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	131600111	rs2280841	T	C	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	131602897	.	AT	A	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.971;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr9	131670919	rs3750319	T	C	8875.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr9	131689361	rs751340	G	A	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:87,94:0.52:181
chr9	131699847	rs12686860	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	131700209	rs10113912	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr9	131702566	rs17455252	G	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr9	131702891	rs2273866	A	G	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr9	131715001	rs371313511	CA	C	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=1.130;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chr9	131735559	rs17452428	T	C	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-2.695;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:21,29:0.58:50
chr9	131743701	.	CT	C	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-1.482;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:92,33:0.26:125
chr9	131745548	rs719703	T	C	2211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.941;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:90,105:0.54:195
chr9	131761437	rs2004632	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr9	131761659	rs2302813	A	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr9	131761899	rs2302811	A	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:97,99:0.51:196
chr9	131764969	rs12683155	A	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr9	131765987	rs10739740	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr9	131767668	rs2287363	A	C	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:128,124:0.49:252
chr9	131771505	rs1129098	C	T	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=2.148;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:57,69:0.55:126
chr9	131772389	rs3750340	T	G	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr9	131790531	rs11537529	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	131846774	rs10988199	G	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	131846957	rs11541836	T	C	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	131848382	rs7859344	T	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	131860901	rs3118635	G	T	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	131862073	rs3118638	G	A	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	131862730	rs10819462	C	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	131862781	rs10988204	G	A	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	131863079	rs7866897	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	131871144	rs2768629	A	G	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	131871249	rs2541163	A	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	131871435	rs2541162	A	C	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	131873222	rs3814492	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	131873638	rs3124501	T	G	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	131881492	rs10819466	G	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	131882706	rs3124504	G	A	219.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	131882761	rs9409311	T	C	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	131882961	rs3739843	G	A	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	131891152	rs7023900	C	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	131897221	rs7019373	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	131898880	rs1536548	A	G	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	131899846	rs3118631	T	C	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	131900180	rs2297112	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	131904617	rs57365080	T	TTG	916.75	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr9	131905814	rs913272	T	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	132381749	rs4240434	G	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	132382253	rs7467760	C	T	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	132396281	rs10819551	G	C	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	132396655	rs1558873	A	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	132400480	rs3739851	G	A	8950.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr9	132401824	rs2302780	G	A	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	132402908	rs2241247	C	G	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	132403118	rs10760631	G	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	132404304	rs4837396	C	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	132484643	rs28428946	A	C	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:93,110:0.54:203
chr9	132484782	rs1051445	T	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr9	132484793	rs28441121	C	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr9	132501881	rs2302821	A	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	132511199	rs10988492	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr9	132515081	rs2241271	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr9	132569553	rs1043178	C	T	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	132572628	.	GT	G	41.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.352;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.21;ReadPosRankSum=0.518;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr9	132572629	rs1220509	T	G	151.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.67;ReadPosRankSum=-0.444;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr9	132593379	rs186632248	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	132615077	rs2296786	C	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	132618578	rs4836674	T	C	4623.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	132618807	rs7862315	G	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	132620224	rs2417150	A	G	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	132620364	rs10819568	T	C	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	132620458	rs10819569	C	A	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=2.365;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	132620464	rs10760638	C	T	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=2.206;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	132620620	rs2174156	T	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	132620707	rs2134601	T	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	132620990	rs2174157	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	132623293	rs1503375	C	T	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	132623868	rs10115249	T	C	6630.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	132623917	rs10124224	C	A	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	132625417	rs4837419	CA	TG	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	132625602	rs2900279	T	C	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	132627480	rs913319	C	T	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	132627503	rs750466	C	T	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	132627723	rs913320	G	A	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	132630231	rs913325	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	132630457	rs61760212	G	A	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:91,77:0.46:168
chr9	132630664	rs10602985	TGAC	T	3879.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	132631680	rs6478920	T	C	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	132632162	rs5900871	G	GC	1127.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	132635653	rs1809959	A	G	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr9	132635944	rs2296787	C	G	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	132636031	rs4332226	A	G	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	132636031	.	AGT	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=60.0;NF=80;NR=88;PP=2947;QD=20;SC=GAGGTGAGCCAGTGGCCTCGG;SbPval=0.57;Source=Platypus;TC=182;TCF=88;TCR=94;TR=168;WE=132636041;WS=132636021;set=Platypus	GT:AD:AF:DP	1/1:14,168:0.92:182
chr9	132636033	rs4415421	T	C	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.16;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	132652677	rs60841376	G	GGA	412.19	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr9	132658044	rs2047837	T	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	132658078	rs71738364	G	GT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=2.318;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:75,29:0.28:104
chr9	132662786	rs1023000	C	T	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	132671359	rs3215850	T	TG	456.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	132672319	rs7855720	G	A	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	132677034	.	G	GTGTATA	110	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=4;MGOF=35;MMLQ=24;MQ=60.0;NF=6;NR=0;PP=110;QD=25.5;SC=ACATACATATGTCTATATATA;SbPval=1.0;Source=Platypus;TC=7;TCF=6;TCR=1;TR=6;WE=132677044;WS=132677024;set=Platypus	GT:AD:AF:DP	0/1:1,6:0.86:7
chr9	132677036	.	C	A	41.56	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	132678195	rs7867211	G	A	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	132678293	.	TAGAGAGAAAGAG	T	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.193;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr9	132681277	rs5900875	C	CT	316.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=0.296;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr9	132681619	rs1054874	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	132686186	rs4836680	A	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	132689671	rs4837429	A	G	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	132719627	rs139055249	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr9	132720720	rs11394970	G	GA	1696.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	132816398	rs5900882	T	TC	4066.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	132838063	rs11446412	C	CT	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-0.319;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:11,37:0.77:48
chr9	132841808	rs6478942	G	C	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	132845723	rs7855078	T	A	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	132845986	rs10819597	T	C	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	132848653	rs11399718	C	CT	1746.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	132862830	rs10081664	AA	TC	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	132863035	rs2277196	G	C	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	132866883	rs7868997	T	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	132866906	rs887536	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	132872686	rs4837460	A	G	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	132887249	rs11316087	TA	T	106.25	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr9	132891113	rs2286794	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	132891113	.	GGT	AGC	1233	.	AC=2;AF=1.00;AN=2;BRF=0.06;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=4;NR=21;PP=1233;QD=51.4587149945;SC=GTGTGAATCGGGTCGGCTGCT;SbPval=0.69;Source=Platypus;TC=27;TCF=5;TCR=22;TR=25;WE=132891123;WS=132891103;set=Platypus	GT:AD:AF:DP	1/1:2,25:0.93:27
chr9	132891115	rs7853219	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	132897231	rs1003416	G	A	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=1.321;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:88,82:0.48:170
chr9	132903767	rs11299315	TA	T	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.606;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr9	132962801	rs7037407	A	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	132962816	rs7022964	T	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	132963115	rs887534	T	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	132963129	rs887535	G	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	132963350	rs4837482	T	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	132980035	rs2277198	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=-1.776;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr9	132985111	rs3829905	T	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr9	132988709	rs2277200	T	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr9	133028155	rs12336255	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr9	133028196	rs12336285	G	A	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:44,62:0.58:106
chr9	133028204	rs72240442	CGGCAGT	C	2376.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,64:0.54:119
chr9	133028476	rs71387337	A	AC	984.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr9	133048501	rs6478957	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr9	133057105	rs34014907	C	T	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr9	133058082	rs10739777	G	A	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	133058181	rs12348163	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr9	133058197	rs7045548	C	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	133058892	rs34511011	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr9	133066939	rs76577761	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr9	133072426	rs12353455	C	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr9	133231452	rs58522320	G	GC	279.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr9	133235901	rs61748916	C	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr9	133235927	rs61748897	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr9	133260316	rs7858563	T	G	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr9	133260353	rs11244109	G	A	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	133263923	rs7849839	T	C	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	133264059	rs35750041	GC	G	758.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.35;ReadPosRankSum=0.764;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr9	133264074	rs11244124	A	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.851;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.636;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr9	133264096	rs11244127	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr9	133270337	rs883982	A	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr9	133270740	rs6597641	T	C	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	133280580	rs1475732	C	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	133281691	rs11244201	C	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	133283255	rs10736862	A	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	133284310	rs10793975	G	A	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	133294244	rs13294886	G	A	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:68,81:0.54:149
chr9	133307984	rs2282217	C	T	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,43:0.50:86
chr9	133324400	rs11243372	A	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-1.357;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:49,32:0.40:81
chr9	133324502	rs10123082	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	133325472	rs4740158	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr9	133327439	rs1760275	T	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	133327835	rs1615006	G	A	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	133342270	rs11243414	A	C	4900.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:244,247:0.50:491
chr9	133346920	rs652313	A	G	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	133346983	rs641510	A	G	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	133347080	rs486889	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr9	133355371	rs540140	G	T	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,64:0.58:111
chr9	133364757	rs1057484	T	C	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,73:0.54:135
chr9	133376153	rs2282219	A	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr9	133488447	rs2304812	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr9	133498017	rs35428077	CA	C	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.228;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr9	133501996	rs11333376	AG	A	509.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr9	133505952	rs2304810	C	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr9	133510021	rs2304808	T	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr9	133511393	rs76482042	C	T	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:99,101:0.51:200
chr9	133543700	rs138789124	GGT	G	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.014;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:128,15:0.10:143
chr9	133553993	rs7021384	C	T	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:78,77:0.50:155
chr9	133554065	rs7030674	A	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:45,59:0.57:104
chr9	133710722	rs11433465	G	GC	512.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	133710740	rs11433464	G	GC	750.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.54;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	133710804	rs7866590	T	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	133710819	rs11433463	T	TC	3246.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	133748083	rs2070997	A	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	133755282	rs11793797	T	G	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=1.732;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:16,23:0.59:39
chr9	133755528	rs2227985	A	G	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,48:0.44:110
chr9	133755754	rs12005009	T	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	133761001	rs1056171	A	G	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	133769169	rs3847193	G	A	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	133779448	rs11792889	A	G	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	133787225	rs6597650	A	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr9	133911598	rs2275132	A	G	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	133911821	rs2275130	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr9	133914321	rs45603838	C	T	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:127,151:0.54:278
chr9	133924451	rs869457	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr9	133927878	rs10901333	A	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:47,78:0.62:125
chr9	133928345	rs12349966	C	T	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:174,148:0.46:322
chr9	133936334	rs11244268	G	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr9	133936381	rs3824398	G	A	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	133936571	rs3739510	C	G	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	133942624	rs3765569	A	G	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	133944522	rs2275142	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.32;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	133944522	.	CGCA	TGCA,TGCC	141	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=4;HapScore=3;MGOF=5;MMLQ=24;MQ=60.0;NF=2,0;NR=17,8;PP=141,87;QD=9.25111644985;SC=GGAAAATGGGCGCAGCAGGAA;SbPval=0.6;Source=Platypus;TC=19;TCF=2;TCR=17;TR=19,8;WE=133944533;WS=133944512;set=Platypus	GT:AF:DP	0/1:1.00:19
chr9	133944525	rs2275141	A	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=0.057;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr9	133946774	rs4740409	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr9	133946849	rs34910694	C	CT	1233.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr9	133946909	rs10901344	G	A	2893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.154;QD=17.86;ReadPosRankSum=0.071;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:86,76:0.47:162
chr9	133946915	rs10901345	C	G	2924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.126;QD=17.83;ReadPosRankSum=0.257;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:86,78:0.48:164
chr9	133948049	rs2275140	A	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	133951180	rs13301105	G	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr9	133951230	rs3818800	C	T	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,62:0.58:107
chr9	133957586	rs149053504	C	G	1662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.654;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:135,89:0.40:224
chr9	133961026	rs147092908	G	A	3705.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:139,173:0.55:312
chr9	133962853	rs4740411	C	T	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:203,125:0.38:328
chr9	133963008	rs4740412	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:99,62:0.39:161
chr9	133963058	rs6597675	C	A	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:79,99:0.56:178
chr9	133963101	rs4740413	A	G	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.383;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:102,92:0.47:194
chr9	133967240	rs818056	T	C	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:76,96:0.56:172
chr9	133967295	rs710074	C	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr9	133967310	rs10696088	T	TCA	1087.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr9	133986836	rs353528	C	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	133986848	rs353527	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	133986980	rs353526	T	G	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	133987060	rs353525	G	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	133996460	rs353511	T	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	133996503	rs353510	T	A	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	133996655	rs147138920	C	T	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr9	134020092	rs103612	C	T	8323.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr9	134064345	rs2274427	T	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	134067795	rs4602942	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	134074491	rs139553425	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr9	134076950	rs56349054	C	CA	457.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;MQRankSum=0.623;QD=14.75;ReadPosRankSum=0.177;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr9	134136515	rs352952	A	G	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	134136677	rs352951	A	G	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	134140113	rs7859822	C	T	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-0.130;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr9	134165368	rs7029366	G	C	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	134165888	rs11244356	T	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	134165899	rs11244357	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	134183379	rs2966332	C	T	9762.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr9	134183503	rs2986606	T	C	9765.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr9	134322324	rs2966340	G	A	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr9	134323240	rs2994064	A	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr9	134330322	.	T	G	67	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5081;HP=1;HapScore=2;MGOF=9;MMLQ=27;MQ=56.4;NF=5;NR=0;PP=67;QD=20.3542425094;SC=TGTTGGTCAGTCTGGTCTCAA;SbPval=1.0;Source=Platypus;TC=7;TCF=6;TCR=1;TR=5;WE=134330330;WS=134330318;set=Platypus	GT:AD:AF:DP	1/0:2,5:0.71:7
chr9	134330340	.	T	A	85	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=28;MQ=57.27;NF=6;NR=1;PP=85;QD=17.110173221;SC=CAAACTCCTGTCCTCATGATC;SbPval=0.74;Source=Platypus;TC=11;TCF=9;TCR=2;TR=7;WE=134330348;WS=134330330;set=Platypus	GT:AD:AF:DP	1/0:4,7:0.64:11
chr9	134334588	rs34553878	A	G	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr9	134346315	rs4310250	T	C	5285.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:237,240:0.50:477
chr9	134346424	rs77664147	G	C	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:109,115:0.51:224
chr9	134348807	rs4276727	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr9	134348818	rs5900941	TG	T	612.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr9	134350231	rs17458486	C	T	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:189,167:0.47:356
chr9	134350323	rs10736851	C	G	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:96,122:0.56:218
chr9	134350458	rs10751478	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr9	134350647	rs10793873	T	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	134351065	rs7858488	G	T	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:93,94:0.50:187
chr9	134351343	rs11243403	C	T	4512.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:206,208:0.50:414
chr9	134351500	rs113338693	C	T	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:147,133:0.47:280
chr9	134353093	rs45451696	C	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	134354794	rs45501698	G	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr9	134358108	rs2275498	A	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr9	134358579	rs76680280	C	T	95.81	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr9	134358657	rs10901061	G	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	134359918	rs10751480	G	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=-0.114;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr9	134360015	rs10793874	G	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr9	134361318	rs3808829	C	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr9	134361581	rs10793875	T	A	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:124,106:0.46:230
chr9	134361627	rs10901062	G	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:62,66:0.52:128
chr9	134367015	rs45445092	C	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr9	134367743	rs4740253	G	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr9	134371165	rs41296113	C	T	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:78,74:0.49:152
chr9	134382673	rs6597501	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr9	134384277	rs11243404	T	C	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:70,85:0.55:155
chr9	134384500	rs11999204	C	T	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:47,65:0.58:112
chr9	134384513	rs28447664	A	G	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr9	134385436	rs2296949	A	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:71,73:0.51:144
chr9	134385599	rs2018621	A	G	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:128,90:0.41:218
chr9	134386659	rs34159422	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr9	134386675	rs4740163	T	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	134386744	rs10901065	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr9	134386781	rs4740164	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr9	134386903	rs10901066	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr9	134387315	rs10901068	C	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr9	134387488	rs3739494	T	C	1834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.026;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:84,92:0.52:176
chr9	134390993	rs77373739	C	T	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr9	134394163	rs1547768	A	G	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:98,121:0.55:219
chr9	134394610	rs749590	G	A	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.43;ReadPosRankSum=1.108;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr9	134394610	.	GGG	AGA	855	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=18;NR=2;PP=855;QD=45.4233937431;SC=TCATTTGACCGGGCAGTCTTG;SbPval=0.64;Source=Platypus;TC=55;TCF=49;TCR=6;TR=20;WE=134394620;WS=134394600;set=Platypus	GT:AD:AF:DP	1/0:35,20:0.36:55
chr9	134394612	rs749591	G	A	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=0.319;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr9	134394646	rs2010635	A	G	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr9	134395628	rs2277152	C	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chr9	134395687	rs2277153	C	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr9	134397624	rs4740165	C	T	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:103,114:0.53:217
chr9	134398534	rs3739495	T	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.603;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr9	134401335	rs2296957	C	T	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=2.425;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:87,69:0.44:156
chr9	134404199	rs4740260	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	134406071	rs7867616	C	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	134406131	rs3904960	G	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr9	134431608	rs139300091	C	CG	812.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,36:0.37:97
chr9	134433417	rs28731115	C	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	134433463	rs4740167	T	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	134433562	rs34226924	C	T	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.280;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:88,79:0.47:167
chr9	134458109	rs3765545	C	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr9	134463289	rs68140797	GACAA	G	1413.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr9	134464431	rs3824397	G	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr9	134465398	rs3818581	T	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	134467456	rs2296951	A	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr9	134467578	rs3215862	GA	G	1981.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	134473475	rs78835532	C	T	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:58,72:0.55:130
chr9	134473517	rs2296950	T	C	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr9	134477387	rs3842210	AG	A	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;MQ=60.83;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	134479267	rs111703184	CG	C	609.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr9	134479293	rs7037668	A	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	134480221	rs7045121	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr9	134480272	rs72054278	GGT	G	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.747;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr9	134497450	rs7023385	C	A,G	984.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	1/2:0.36,0.64:36
chr9	134505545	rs11243457	A	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr9	134514011	rs41317002	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr9	134584987	.	G	GA	861.73	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr9	134615240	rs183326492	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-2.655;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr9	135102254	rs2149171	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr9	135105964	rs4962173	A	G	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	135106054	rs2274854	T	A	7578.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr9	135117178	rs12342966	T	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	135139826	rs3739927	T	C	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-1.768;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:85,79:0.48:164
chr9	135139901	rs1056899	T	C	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr9	135144723	rs2274562	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	135146993	rs7046688	A	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,68:0.58:117
chr9	135150616	rs2296865	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr9	135150834	rs2296866	A	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr9	135152543	rs201575546	T	TA	874.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=6.43;ReadPosRankSum=0.315;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:68,68:0.50:136
chr9	135153668	rs11243704	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr9	135158543	rs2296874	G	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr9	135158547	rs374507994	C	CA	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.106;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr9	135158619	rs2296873	A	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr9	135161766	rs201395158	GA	G	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=0.000;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr9	135172163	rs2296868	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr9	135172412	rs2296869	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr9	135173454	rs3831154	C	CA	1095.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,36:0.41:87
chr9	135173685	rs2296871	T	C	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.029;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:102,105:0.51:207
chr9	135173758	rs6597570	G	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr9	135187128	rs2296872	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr9	135202829	rs543573	T	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr9	135203231	rs1183768	C	T	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:147,127:0.46:274
chr9	135203409	rs1185193	A	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:77,90:0.54:167
chr9	135205006	rs882709	G	C	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.546;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:45,50:0.53:95
chr9	135206460	rs9411449	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr9	135211609	rs111938515	AAC	A	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr9	135221597	rs497650	G	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	135263573	rs556386	G	T	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	135265876	rs471890	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	135271725	rs1166320	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr9	135271987	rs1166321	T	C	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.202;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-1.841;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:54,71:0.57:125
chr9	135272061	rs5900975	GT	G	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.216;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr9	135273507	rs569288	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr9	135273607	rs504525	C	G	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:125,84:0.40:209
chr9	135273759	rs5900976	G	GA	619.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr9	135276710	rs553323	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr9	135374898	rs562350	T	C	11723.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr9	135375023	rs61001416	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:54,73:0.57:127
chr9	135388799	rs577416	G	A	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	135412913	rs13286286	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr9	135470176	rs306549	C	G	202.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=-0.897;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr9	135470414	rs306547	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr9	135500944	rs17149380	A	G	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:60,89:0.60:149
chr9	135507624	rs35126244	CGT	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.869;QD=11.21;ReadPosRankSum=-1.298;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr9	135517304	rs3739907	C	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr9	135526546	rs200786970	C	CT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.600;QD=6.26;ReadPosRankSum=0.209;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr9	135533833	rs11243866	C	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr9	135536540	rs4498679	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,63:0.55:115
chr9	135538050	rs35918594	C	T	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr9	135538807	rs2583805	G	C	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.545;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-1.720;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr9	135554566	rs371169	G	A	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr9	135562800	rs456396	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr9	135602727	rs1999121	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr9	135603108	rs139398120	TCC	T	87.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr9	135739214	rs2285938	C	T	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	135739226	rs2251448	T	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	135763816	rs2073869	C	T	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:127,137:0.52:264
chr9	135764081	rs1062218	A	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr9	135764162	rs146375638	C	CT	88.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	135776034	rs1076160	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr9	135776341	rs7020438	C	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr9	135776845	rs7020175	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr9	135777121	rs11243931	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr9	135780006	rs67465842	TACACTGG	T	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr9	135781563	rs10901220	G	A	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr9	135782026	rs7870151	C	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr9	135782221	rs7862221	T	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:102,87:0.46:189
chr9	135782277	rs7872606	G	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr9	135786112	rs6597586	T	C	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr9	135786904	rs1073123	A	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr9	135802839	rs10901224	T	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr9	135821099	rs56195815	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.259;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr9	135863485	rs615667	A	G	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	135863502	rs62579580	G	A	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr9	135865359	rs681470	A	G	3186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=1.040;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:176,163:0.48:339
chr9	135930735	rs645841	T	C	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	135942339	rs200749469	G	A	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.550;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:95,70:0.42:165
chr9	135946599	rs488087	C	T	5187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.945;QD=10.74;ReadPosRankSum=0.719;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:229,254:0.53:483
chr9	135961787	rs10901232	A	G	3999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-0.522;QD=12.74;ReadPosRankSum=1.743;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:134,180:0.57:314
chr9	135961796	rs10901233	C	T	6221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.066;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=0.375;QD=23.39;ReadPosRankSum=1.539;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:108,158:0.59:266
chr9	135961809	rs679779	T	C	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	135974079	rs1062356	G	C	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	135974100	rs886017	G	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:73,52:0.42:125
chr9	135976664	rs34018822	C	T	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:70,104:0.60:174
chr9	135976698	rs35108384	G	A	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:105,165:0.61:270
chr9	135977583	rs2519091	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr9	135978153	rs694881	G	C	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:47,71:0.60:118
chr9	135979751	rs598499	C	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr9	135982088	rs2073822	A	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,84:0.50:168
chr9	135983504	rs2285375	T	C	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:73,90:0.55:163
chr9	135983902	rs34479413	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.187;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr9	135985166	rs3747817	G	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr9	135985796	rs3761824	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr9	136004770	rs34429998	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr9	136030458	rs651453	C	T	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	136031346	rs2073927	A	G	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	136080746	rs1052517	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr9	136081391	rs6597608	G	A	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr9	136081466	rs6597609	C	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr9	136081598	rs28507496	C	T	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr9	136083580	rs2073870	T	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr9	136083801	rs4310274	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr9	136131022	rs8176751	C	T	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr9	136131188	rs8176749	C	T	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:110,124:0.53:234
chr9	136131315	rs8176747	C	G	3781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=6.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=1.992;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:122,107:0.47:229
chr9	136131322	rs8176746	G	T	3835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.242;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=5.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.97;ReadPosRankSum=1.173;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:118,108:0.48:226
chr9	136131415	rs8176743	C	T	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:135,127:0.48:262
chr9	136131461	rs8176741	G	A	3394.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:161,163:0.50:324
chr9	136131592	rs7853989	G	C	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:135,152:0.53:287
chr9	136131846	rs7873416	T	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr9	136132617	rs8176725	G	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr9	136132633	rs2073824	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr9	136132754	rs8176722	C	A	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr9	136132873	rs8176720	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr9	136132908	rs8176719	T	TC	830.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr9	136132954	rs75179845	T	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr9	136133380	.	CGGG	C	2933.73	.	AC=2;AF=1.00;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	136133506	rs512770	A	G	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	136133531	rs4962040	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr9	136133582	rs8176712	AG	A	1000.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	136135137	.	GCTTCTGTCCACAC	G	1546.73	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	136135195	rs549331	G	C	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	136135237	rs549443	AT	GC	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;JOINED;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	136135365	rs624601	A	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	136135444	rs551322	G	A	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	136136770	rs688976	A	C	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	136137657	rs8176693	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr9	136150466	rs616154	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	136150484	rs559723	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	136185324	rs11789139	C	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr9	136185358	rs544622	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	136199466	rs886089	G	A	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:170,153:0.47:323
chr9	136199503	rs886090	G	A	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:180,157:0.47:337
chr9	136201470	rs563666	C	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	136211248	rs9645009	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr9	136213521	rs616836	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr9	136214955	rs553877	A	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr9	136219564	rs28715079	G	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr9	136221557	rs28615629	A	G	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,50:0.44:114
chr9	136223043	rs59358281	C	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.11;ReadPosRankSum=0.566;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr9	136223221	.	GCCCCGCA	G	143	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	136227260	rs12763	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr9	136232758	rs2269894	T	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr9	136234124	rs1179033	A	G	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	136260696	rs41306714	G	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr9	136268038	rs3124748	C	T	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:92,64:0.41:156
chr9	136268084	rs3124747	A	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	136274058	.	G	T	358	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=3;MGOF=53;MMLQ=28;MQ=58.65;NF=2;NR=4;PP=358;QD=65.4618687579;SC=AGTAACATCTGTGTGTGTGTG;SbPval=0.78;Source=Platypus;TC=24;TCF=10;TCR=14;TR=6;WE=136274071;WS=136274046;set=Platypus	GT:AD:AF:DP	0/1:18,6:0.25:24
chr9	136277480	rs2285486	A	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:92,100:0.52:192
chr9	136277854	rs2285488	G	A	3885.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:226,191:0.46:417
chr9	136291539	rs3118668	A	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	136291594	rs28515121	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr9	136291621	rs28757785	A	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr9	136295290	rs3124773	A	C	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	136301982	rs2301612	C	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr9	136303253	rs2028002	T	C	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr9	136307408	rs602184	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr9	136308796	rs28446901	C	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.64;ReadPosRankSum=0.921;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr9	136309841	rs592514	A	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr9	136310908	rs685523	C	T	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:95,43:0.31:138
chr9	136311017	rs652600	G	A	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	136313904	rs2769073	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr9	136323248	rs3094374	T	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr9	136328657	rs3124765	T	C	8557.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr9	136333487	rs3094381	G	A	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:93,125:0.57:218
chr9	136337168	rs3094378	G	A	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.203;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:69,49:0.42:118
chr9	136338187	rs3124762	A	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-0.231;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr9	136340200	rs2073935	T	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr9	136342415	rs3124759	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr9	136343647	rs3094326	G	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr9	136390015	rs13300181	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	136401606	rs11507717	A	C	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	136402345	rs11516156	T	A	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	136404775	.	A	ACGGCTGTCCCGGCTGTCCCGGCTGTCC	1142.73	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	136409457	rs9802736	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr9	136409529	rs11522325	C	T	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr9	136409580	rs9802778	T	G	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	136412041	rs11507719	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr9	136412170	rs2073874	C	T	9162.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr9	136412236	rs2073875	A	T	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr9	136412255	rs2073876	A	C	8032.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr9	136412296	rs2073877	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:101,83:0.45:184
chr9	136412346	rs2073878	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	136412382	rs2073879	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	136501941	rs2797849	G	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr9	136505114	rs1108580	A	G	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.425;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:82,69:0.46:151
chr9	136507473	rs5320	G	A	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:146,116:0.44:262
chr9	136509312	rs1611125	C	T	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:104,78:0.43:182
chr9	136509514	rs1611128	G	A	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:130,129:0.50:259
chr9	136512906	rs3025411	G	A	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.837;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.218;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:71,62:0.47:133
chr9	136518097	rs77905	A	G	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:93,87:0.48:180
chr9	136522187	rs1611131	A	G	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:161,132:0.45:293
chr9	136532107	rs7854480	G	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr9	136536633	rs2797840	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr9	136536679	rs129932	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr9	136536793	rs2519123	C	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:77,57:0.43:134
chr9	136555629	rs886016	T	C	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=1.862;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:97,68:0.41:165
chr9	136559460	rs2073817	C	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr9	136561303	rs2502739	A	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr9	136561367	rs2502740	G	A	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:123,99:0.45:222
chr9	136561567	rs2427998	G	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr9	136569974	rs2510248	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr9	136570004	rs2502747	GT	AC	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr9	136573412	rs2073815	G	A	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,65:0.50:129
chr9	136573648	rs495464	A	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr9	136578271	rs582326	G	C	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.495;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:56,55:0.50:111
chr9	136584196	rs2027963	T	G	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr9	136590812	rs150689824	A	AAAAC	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=1.197;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr9	136594864	rs2427988	A	G	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	136596397	rs916619	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr9	136597592	rs149002589	T	C	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:134,128:0.49:262
chr9	136599146	rs573904	C	T	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=1.025;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:65,84:0.56:149
chr9	136599315	rs2488553	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	136629256	rs66574029	CTG	C	1288.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr9	136629298	rs2797825	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr9	136629399	rs2797826	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr9	136637177	.	A	ACACACGGCCCCGGCGGTCACTGCGTGAGGGC	2033.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=8.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=0.891;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:87,67:0.44:154
chr9	136637198	.	C	T	636	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=23;MQ=59.97;NF=20;NR=31;PP=636;QD=13.1523767166;SC=CGGCGGTCACCGCGTGAGGGC;SbPval=0.63;Source=Platypus;TC=150;TCF=62;TCR=88;TR=51;WE=136637206;WS=136637188;set=Platypus	GT:AD:AF:DP	0/1:99,51:0.34:150
chr9	136637242	rs2510244	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=8.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.762;SOR=2.025;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr9	136640226	rs2488559	G	A	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	136641235	rs667183	C	T	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	136641313	rs2077065	G	C	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	136643994	rs602990	T	C	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	136645079	rs540626	G	C	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	136648535	rs2488563	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr9	136648565	rs680458	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr9	136648611	rs56145872	A	AG	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr9	136651125	rs56072078	GGTGCCT	G	1493.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	136651185	rs2023664	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	136652465	rs2258889	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	136672493	rs2510246	A	G	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=2.792;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:27,29:0.52:56
chr9	136672529	rs2428089	A	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr9	136726626	rs7853626	C	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,50:0.47:107
chr9	136804211	rs2073886	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr9	136905474	rs467379	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr9	136907108	rs467317	G	A	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:92,90:0.49:182
chr9	136913355	rs464826	T	C	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:59,86:0.59:145
chr9	137004907	rs28581991	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr9	137005023	rs11556390	C	T	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:178,172:0.49:350
chr9	137007298	rs28648812	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=16.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=2.465;SOR=4.804;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr9	137013582	rs28695913	G	A	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr9	137019511	rs28703244	T	C	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:186,216:0.54:402
chr9	137021803	rs28522840	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr9	137211146	rs944860	C	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr9	137271454	rs34189335	A	G	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr9	137293761	rs2234753	G	A	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:49,83:0.63:132
chr9	137293842	rs35030950	C	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr9	137313869	rs112042222	C	G	12191.77	.	AC=1;AF=0.500;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	0/1:438,582:0.57:1020
chr9	137314208	rs115035866	C	T	13950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.998;ClippingRankSum=0.000;DB;DP=2078;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.758;QD=7.95;ReadPosRankSum=5.773;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:996,758:0.43:1754
chr9	137320855	rs3118570	G	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr9	137321156	rs1536475	A	G	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr9	137323948	rs35443779	A	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr9	137325822	rs3132293	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr9	137328175	rs6413514	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr9	137328216	rs1805347	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr9	137592961	rs4341231	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr9	137600270	rs4841925	T	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	137600687	rs3128588	C	T	10926.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr9	137619195	rs3124299	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	137619425	rs3109683	T	G	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	137620474	rs3124302	C	T	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	137622033	rs3124308	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=3.033;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	137622039	rs3128598	G	A	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=2.958;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	137622455	rs3128600	A	C	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	137623303	rs76548907	G	A	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:80,80:0.50:160
chr9	137623555	rs3109675	T	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	137623601	rs3124310	C	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	137642477	rs62574081	C	T	3761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-1.720;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:189,183:0.49:372
chr9	137672012	rs3124932	C	T	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	137686906	rs4072883	C	T	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr9	137687038	rs4072882	A	G	2556.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:111,123:0.53:234
chr9	137688048	rs10776902	T	C	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr9	137688577	rs3811161	A	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr9	137688624	rs3811160	A	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:74,75:0.50:149
chr9	137688657	rs3811159	A	G	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;MQ=60.75;set=Intersection	GT:AD:AF:DP	0/1:132,127:0.49:259
chr9	137688780	rs142676375	GCCTGTCCCCTCCAAAACCCA	G	6157.73	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:221,176:0.44:397
chr9	137688863	rs72774465	G	A	2297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.847;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=6.693;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.331;QD=12.16;ReadPosRankSum=2.037;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:88,101:0.53:189
chr9	137690318	rs4240707	A	T	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:94,102:0.52:196
chr9	137694032	rs10858281	C	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr9	137702200	rs3827850	G	C	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.14;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	137702209	rs3827849	G	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	137707942	rs4841934	T	C	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	137708803	rs3811149	A	G	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	137708934	rs10858282	T	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	137708960	rs10776910	A	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	137708973	rs10858283	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	137709517	rs7854010	T	C	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:4,78:0.95:82
chr9	137709780	rs11792894	T	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	137709795	rs7847840	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	137710961	rs10745388	G	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	137711997	rs2228560	G	C	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.369;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:117,99:0.46:216
chr9	137714027	rs9697186	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.53;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	137715150	rs3128599	AT	TG	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;JOINED;set=Intersection	GT:AD:AF:DP	0/1:96,71:0.43:167
chr9	137716422	rs45443491	C	T	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:156,153:0.50:309
chr9	137717610	rs7868111	T	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:59,36:0.38:95
chr9	137741411	rs139588734	G	A	9047.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.54;MQRankSum=-1.327;QD=25.85;ReadPosRankSum=-1.540;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:2,348:0.99:350
chr9	137741480	rs113454901	G	A	5173.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=5.499;MLEAC=2;MLEAF=1.000;MQ=43.27;MQRankSum=-1.810;QD=34.72;ReadPosRankSum=0.337;SOR=1.926;set=HC	GT:AD:AF:DP	1/1:1,148:0.99:149
chr9	137741530	rs56179815	T	C	2064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=5.060;MLEAC=1;MLEAF=0.500;MQ=44.40;MQRankSum=2.885;QD=14.24;ReadPosRankSum=-0.419;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:86,59:0.41:145
chr9	137741563	.	T	TATCACACCTCCCAGGAAGCGTGGTATCACACCTCCCAGGAAGCACAGG	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.13;MQRankSum=-1.736;QD=3.99;ReadPosRankSum=-1.128;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:105,1:0.01:106
chr9	137741585	.	A	AGGATCACACCTCCCAGGAAGCACG	1892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=16.047;MLEAC=1;MLEAF=0.500;MQ=52.73;MQRankSum=-3.398;QD=12.53;ReadPosRankSum=4.406;SOR=2.426;set=HC	GT:AD:AF:DP	0/1:88,63:0.42:151
chr9	137741632	rs201127101	T	C	2304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.233;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=3.112;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-3.910;QD=7.56;ReadPosRankSum=0.575;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:177,128:0.42:305
chr9	137742018	.	A	ATATCACACCTCCCAGGAAGCACGG	7014.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;ClippingRankSum=0.000;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-11.466;QD=13.86;ReadPosRankSum=-4.025;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:348,158:0.31:506
chr9	137742280	rs373064631	T	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=889;ExcessHet=3.0103;FS=7.152;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-14.858;QD=0.61;ReadPosRankSum=6.120;SOR=1.567;set=HC	GT:AD:AF:DP	0/1:704,66:0.09:770
chr9	137742597	rs72502717	A	G	5737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.433;QD=9.86;ReadPosRankSum=1.397;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:295,287:0.49:582
chr9	137742694	rs72502718	T	C	4537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.012;QD=10.34;ReadPosRankSum=-0.526;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:214,225:0.51:439
chr9	137772664	rs17514136	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:83,71:0.46:154
chr9	137772792	rs3128627	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	137774545	rs3124955	T	C	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr9	137775084	rs7024491	A	G	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:61,91:0.60:152
chr9	137775139	rs3128624	A	G	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=-0.132;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:89,60:0.40:149
chr9	137775155	rs4520243	T	C	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.349;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:87,60:0.41:147
chr9	137775212	rs7037264	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr9	137779026	rs17549193	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr9	137779306	rs4521835	T	G	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.194;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:38,33:0.46:71
chr9	137801314	rs2989734	A	G	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:83,87:0.51:170
chr9	137801416	rs2989735	T	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:104,86:0.45:190
chr9	137801800	rs1071583	T	C	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:107,119:0.53:226
chr9	137803188	rs34307683	AT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-1.248;SOR=0.044;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr9	137804360	rs2274845	A	G	2217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.472;QD=9.32;ReadPosRankSum=-0.027;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:124,114:0.48:238
chr9	137804830	rs2070622	G	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr9	137806329	rs11421281	T	TC	4316.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:104,112:0.52:216
chr9	137806334	rs2989721	A	G	4222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.01;ReadPosRankSum=-0.320;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:103,108:0.51:211
chr9	137806344	rs3012788	C	T	3996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.71;ReadPosRankSum=-0.733;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:91,102:0.53:193
chr9	137806487	rs2989722	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr9	137806783	rs3012789	G	A	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.541;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=0.778;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:45,80:0.64:125
chr9	137808427	rs2382714	T	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr9	137809685	rs10858293	C	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr9	137809861	rs10117466	G	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr9	137967701	rs730539	T	C	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:114,118:0.51:232
chr9	137967865	.	C	T	689.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr9	137968919	rs61043559	G	GAA	9626.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr9	137978360	rs11103667	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr9	137978552	rs4446800	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr9	137978638	rs695156	T	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr9	137982127	rs500461	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	137982220	rs10628208	A	ATGTG	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.43;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.400;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr9	137982232	rs56337838	T	G	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.97;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.166;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr9	137982234	rs10672761	G	GTT	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.13;MQRankSum=0.000;QD=10.85;ReadPosRankSum=0.313;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr9	137987961	.	C	T	30.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=0.842;QD=6.16;ReadPosRankSum=-0.674;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr9	137988675	rs655559	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr9	138236031	rs914398	A	G	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:119,132:0.53:251
chr9	138236212	rs914397	T	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	138236305	rs4842254	T	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr9	138378856	rs2078266	A	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	138379002	rs1975518	T	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr9	138387483	rs2274650	G	A	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	138391299	rs7037251	T	A	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	138391517	rs2274651	A	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	138391774	rs2274652	C	T	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	138394045	.	C	T	847.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr9	138415201	rs56239374	C	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr9	138415238	rs56120410	C	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr9	138416919	rs3216169	GC	G	838.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr9	138438189	rs141004230	G	T	140.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.68;QD=46.68;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	138438190	rs200992384	AAGGCTGGCTTCTGACCCCGTGCTCCC	A	131	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.01;QD=32.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	138439005	rs504061	A	C	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	138440525	rs2590500	C	G	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.66;QD=45.39;SOR=2.437;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	138440525	.	CTT	GTC	1747	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=24;MQ=56.49;NF=73;NR=18;PP=1747;QD=19.7853612622;SC=CTGTCCCCACCTTGGCTCACC;SbPval=0.62;Source=Platypus;TC=99;TCF=78;TCR=21;TR=91;WE=138440535;WS=138440515;set=Platypus	GT:AD:AF:DP	1/1:8,91:0.92:99
chr9	138440527	rs2590501	T	C	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.79;QD=44.16;SOR=2.411;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	138440641	rs2853652	T	C	10489.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr9	138440726	rs3827838	C	T	11517.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	138440726	.	CCA	TCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=4;HapScore=1;MGOF=21;MMLQ=21;MQ=59.98;NF=96;NR=122;PP=2947;QD=20;SC=CCCATGACCCCCATGTCCTCC;SbPval=0.58;Source=Platypus;TC=228;TCF=102;TCR=126;TR=218;WE=138440736;WS=138440716;set=Platypus	GT:AD:AF:DP	1/1:10,218:0.96:228
chr9	138440728	rs3827839	A	G	11517.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.71;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	138440756	rs3827841	G	A	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	138441081	rs2590502	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.81;QD=27.90;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	138453811	rs697448	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	138515929	rs12336965	G	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr9	138516119	rs17040344	G	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr9	138516190	rs35762223	T	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:76,84:0.53:160
chr9	138516531	rs7466817	G	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr9	138517853	rs1333241	G	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	138518010	rs1333240	A	G	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	138518101	rs7033170	G	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr9	138523332	rs1333234	C	A	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	138523411	rs1333233	C	T	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	138557256	rs492708	C	T	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	138586198	rs572335	G	A	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:107,102:0.49:209
chr9	138586309	rs484524	A	G	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:178,180:0.50:358
chr9	138586966	rs3119932	GC	AA	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.985;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=0.848;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr9	138587203	rs2769033	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	138587220	rs2483364	T	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	138589311	rs7036532	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr9	138590138	rs506498	T	C	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	138590347	rs529976	C	T	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	138590680	rs474061	G	C	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	138590928	rs471525	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	138591230	rs558113	C	T	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	138591266	rs559326	A	G	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	138594266	rs5901089	A	AC	1512.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	138634454	rs60345996	CCCCCAG	C	1200.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr9	138642912	rs10122976	C	A	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.295;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:75,70:0.48:145
chr9	138644203	rs10735239	T	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:84,89:0.51:173
chr9	138645716	rs12378616	C	T	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,78:0.47:166
chr9	138646881	rs4842032	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr9	138648813	.	GTCCCCACCC	G	2982	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=4;HapScore=1;MGOF=4;MMLQ=26;MQ=59.79;NF=0;NR=66;PP=2982;QD=20;SC=CTCACAGGGGGTCCCCACCCT;SbPval=1.0;Source=Platypus;TC=156;TCF=0;TCR=156;TR=66;WE=138648876;WS=138648803;set=Platypus	GT:AD:AF:DP	0/1:90,66:0.42:156
chr9	138648829	rs13286338	C	G	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.538;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=11.375;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.000;QD=15.27;ReadPosRankSum=4.872;SOR=3.154;set=HC	GT:AD:AF:DP	0/1:61,44:0.42:105
chr9	138648837	rs59909130	A	C	1631.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.827;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=6.108;MLEAC=1;MLEAF=0.500;MQ=61.48;MQRankSum=0.000;QD=17.36;ReadPosRankSum=3.722;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:50,44:0.47:94
chr9	138648838	.	G	A	1631.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.352;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=6.125;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.000;QD=17.55;ReadPosRankSum=3.620;SOR=2.752;set=HC	GT:AD:AF:DP	0/1:49,44:0.47:93
chr9	138648847	.	A	AC	1648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=3.112;MLEAC=1;MLEAF=0.500;MQ=60.76;MQRankSum=0.000;QD=19.17;ReadPosRankSum=2.318;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:42,44:0.51:86
chr9	138648851	.	C	CTCCCATCT,CCCCCACCCTCTCCCATCT	1831.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=102;set=Intersection	GT:AF:DP	0/1:0.55:87
chr9	138650121	.	AC	GT	2117	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=21;MQ=59.82;NF=44;NR=18;PP=2117;QD=35.0075463687;SC=GTGGCCAGGTACAGGCTGCCC;SbPval=0.08;Source=Platypus;TC=127;TCF=103;TCR=24;TR=62;WE=138650130;WS=138650111;set=Platypus	GT:AD:AF:DP	0/1:65,62:0.49:127
chr9	138650213	rs148458008	C	T	4829.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:200,230:0.53:430
chr9	138656783	rs55816769	T	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr9	138656838	rs41298365	A	G	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:78,84:0.52:162
chr9	138657053	rs58604946	T	G	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:75,80:0.52:155
chr9	138657635	rs10117578	A	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-2.458;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr9	138657687	rs10120407	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr9	138657727	rs62583545	A	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr9	138660879	rs11103179	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr9	138660946	.	T	C	90	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=49;MMLQ=21;MQ=54.63;NF=2;NR=7;PP=90;QD=13.8634680608;SC=TGGGGCAGGATGCGTGTGCAC;SbPval=0.59;Source=Platypus;TC=24;TCF=5;TCR=19;TR=9;WE=138660954;WS=138660936;set=Platypus	GT:AD:AF:DP	1/0:15,9:0.38:24
chr9	138662309	rs10776844	A	G	6383.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	138662360	rs56157148	T	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,38:0.36:106
chr9	138662661	rs10858172	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr9	138662962	rs7869884	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr9	138669261	rs914428	G	A	7665.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	138675790	rs10776847	C	G	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	138675801	rs10776848	A	C	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	138676328	.	GCTCCCTCC	G	581.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=41.55;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	138678016	rs36221684	CGCCCT	C	3862.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=43.40;SOR=3.134;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	138679863	rs11103189	A	G	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	138679895	rs11103190	T	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.60;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	138683575	rs41299048	T	C	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	138683790	rs41306389	T	C	10469.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.88;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	138683798	rs41310949	C	T	9972.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	138703476	rs7042455	G	C	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.585;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr9	138706844	rs3739465	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr9	138707256	rs144500996	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr9	138707727	rs913342	C	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,37:0.48:77
chr9	138742077	rs35981196	C	G	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=0.145;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:44,42:0.49:86
chr9	138754582	rs2039330	A	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	138757088	rs41306399	A	G	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-1.390;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:80,60:0.43:140
chr9	138816898	rs4842048	T	C	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.89;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	138816906	rs4842049	T	C	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	138817142	rs11103226	C	T	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.140;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr9	138817178	rs10776854	C	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.10;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	138825117	rs6569	A	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	138837113	rs10776856	T	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	138837958	rs2297691	C	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	138838140	rs7028495	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	138838305	rs2297690	G	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr9	138839888	rs2297689	C	T	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	138898893	rs4842070	C	G	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	138899253	rs56162840	G	GCA	7000.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	138899301	rs56188305	GCA	G	3973.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	138899311	rs56102761	GCA	G	4051.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	138903671	rs9626	A	G	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	138905884	rs11103273	T	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.24;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	138927183	rs149084098	T	C	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	139008803	rs3739466	T	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr9	139010319	rs1717447	A	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	139089066	rs146678449	TC	T	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr9	139089436	rs201591640	C	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr9	139089679	rs7860634	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr9	139089717	rs7850466	TA	GC	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr9	139090465	rs3215774	T	TC	3360.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:6,125:0.95:131
chr9	139091797	rs1924521	A	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr9	139092679	rs4842131	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr9	139094773	rs2274115	A	G	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr9	139094805	rs2274116	C	T	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=1.385;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,28:0.45:62
chr9	139096898	rs10858245	T	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr9	139116666	rs78475959	G	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr9	139116907	rs28594424	T	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr9	139137626	rs79849109	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr9	139142710	rs62579871	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	139142808	rs66470520	T	C	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	139143045	rs74400093	T	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr9	139222014	.	G	A	227.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr9	139222174	rs28495820	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	139230292	rs28447209	T	G	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	139230585	rs28583929	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	139231884	rs75170217	C	T	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr9	139235415	rs60980157	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr9	139243334	rs28429551	T	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:81,54:0.40:135
chr9	139249991	rs28603210	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr9	139252495	rs3812547	G	A	4003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-1.958;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:150,198:0.57:348
chr9	139257411	rs10870202	T	C	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:105,84:0.44:189
chr9	139258052	.	G	A	966.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr9	139258186	rs201269237	C	CGCCCTGCCCCG	591.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr9	139270901	rs61745672	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr9	139272045	rs79283598	C	A	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:136,113:0.45:249
chr9	139273402	rs3812567	C	T	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr9	139302094	rs4880155	C	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr9	139302200	rs11145917	C	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=-0.411;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr9	139324292	rs78191714	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr9	139333049	rs5901103	GCCCT	G	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	139354437	rs45613441	G	A	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,71:0.58:122
chr9	139360354	rs3124590	A	G	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	139369408	rs200238338	C	T	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:80,59:0.42:139
chr9	139391636	rs2229974	G	A	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	139396408	rs3124594	A	G	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:91,83:0.48:174
chr9	139397707	rs10521	G	A	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:99,98:0.50:197
chr9	139400406	rs11145764	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr9	139400904	rs4880098	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr9	139401504	rs3124596	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr9	139402663	rs3124597	T	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr9	139402908	rs3812603	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr9	139403240	.	T	TG	59	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=4;HapScore=2;MGOF=6;MMLQ=28;MQ=60.0;NF=3;NR=0;PP=59;QD=31.0;SC=CAGTGGGACCTGGGGTGACCG;SbPval=1.0;Source=Platypus;TC=10;TCF=10;TCR=0;TR=3;WE=139403248;WS=139403237;set=Platypus	GT:AD:AF:DP	1/0:7,3:0.30:10
chr9	139403268	rs3125000	T	C	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr9	139403554	rs3124598	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr9	139405261	rs3125001	C	T	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	139407452	rs3812608	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	139407932	rs2229971	A	G	7597.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr9	139409648	rs62579232	G	A	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr9	139410177	rs3124603	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	139410424	rs3125006	A	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	139410589	rs4880099	A	G	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	139410679	rs4880100	T	C	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	139411714	rs11145767	T	C	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	139411880	rs9411254	G	A	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	139412197	rs9411208	G	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	139418260	rs4489420	A	G	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	139440852	rs3013307	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr9	139565150	rs4636297	A	G	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	139566823	rs1051828	A	G	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	139569066	rs9411215	A	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	139572068	rs2236514	C	G	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.21;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	139616742	rs945384	A	G	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	139616840	rs3739939	G	A	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	139621168	rs2275160	G	A	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	139639532	rs145717467	CGGCCCACGCACCACACAGCTCCCAACGTGGGCCCCGAGT	C	5526.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	139642961	rs2811728	G	A	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	139649580	rs879467	G	A	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	139650060	rs2784068	C	A	6966.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	139650167	.	G	GAACAGCATGGGGAACAGTGCAGGGAACCCTGCAGGGAACAGCATGGGGAACGGTGCAGGA	2590.73	.	AC=2;AF=1.00;AN=2;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=161.92;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr9	139650595	rs35874639	T	G	15585.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=42.58;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr9	139650619	rs35341952	A	G	17836.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=39.29;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,454:1.00:454
chr9	139651163	rs57411373	A	AG	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	139652338	rs9411272	C	G	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	139653055	rs11145867	C	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr9	139656618	rs2484658	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=6.666;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	139656670	rs2297722	T	C	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=1.144;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:30,42:0.58:72
chr9	139656706	rs2297723	A	C	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.697;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:47,53:0.53:100
chr9	139657834	rs9987876	G	C	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:67,84:0.56:151
chr9	139658051	rs4880070	G	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr9	139658576	rs4880140	G	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr9	139685672	rs2784044	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr9	139685722	rs2784043	T	C	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:63,73:0.54:136
chr9	139686289	rs2811788	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr9	139686357	rs2784042	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,45:0.38:120
chr9	139686556	rs2784041	G	A	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr9	139686949	rs2784040	G	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr9	139690738	rs2784034	C	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	139690840	rs1055995	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr9	139697061	rs2784100	C	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	139699964	rs2811793	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	139700605	rs2811795	T	C	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	139701108	rs2254143	A	C	7658.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:1,273:1.00:274
chr9	139701983	rs3739944	C	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	139702908	rs7864908	C	T	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	139726239	rs2811748	A	G	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	139730129	rs2811744	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	139731969	rs2811742	C	T	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	139732331	rs2811741	G	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	139739643	rs10870132	T	C	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	139741693	.	G	T	1824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.661;ClippingRankSum=0.000;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.581;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:318,124:0.28:442
chr9	139744807	rs872463	A	G	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	139746992	rs10123375	G	A	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	139749067	rs7869864	C	T	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr9	139752899	rs2275156	T	G	12603.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr9	139760510	rs186616649	C	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr9	139760830	rs76229681	CG	C	3044.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	139793030	rs117439227	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr9	139804274	rs4567138	G	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	139804346	rs4448378	C	T	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	139815053	rs10781522	G	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	139818169	rs17250631	CTT	C	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	139820421	rs7852970	G	A	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	139836190	.	CCAGGGCAGCTTCCTACCTCAGTGGTGTCTCTGGGGCTGTGAGCACCA	C	2612.73	.	AC=1;AF=0.500;AN=2;DP=145;set=Intersection	GT:AD:AF:DP	0/1:57,67:0.54:124
chr9	139836362	rs7040705	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	139837990	rs2271872	G	C	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	139839904	rs2071006	T	G	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.189;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	139840471	rs7862602	G	T	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	139840543	rs7850844	A	G	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	139840859	rs908830	T	C	11563.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.07;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr9	139847268	rs146586056	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr9	139847570	rs884218	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	139848273	rs2271869	A	G	8552.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	139848278	rs2271868	T	C	8463.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=1.050;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	139848688	rs4880175	C	T	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	139872048	rs4880179	A	G	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	139875318	rs146717258	C	CCATT,CCATTCATTCATT	1427.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=73;set=Intersection	GT:AF:DP	1/2:0.59,0.41:32
chr9	139877698	rs968516	A	C	11127.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr9	139878828	rs4880082	T	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	139879067	rs2049042	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	139879113	rs2049041	G	A	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	139887042	rs10870159	G	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	139890105	rs141765089	C	G	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr9	139902214	rs10870161	A	G	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	139902712	rs4880185	A	G	8832.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	139902786	rs4880186	G	C	13121.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr9	139902797	rs4880187	C	G	12667.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	139903352	rs59031144	G	GC	4967.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	139904037	rs7048567	A	G	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	139906359	rs2271862	G	A	7729.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr9	139906513	rs2271863	T	C	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	139906686	rs45540434	G	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	139907842	rs4880188	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	139908139	rs10870162	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	139908265	rs10781531	T	C	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	139910648	rs6560657	T	C	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr9	139912178	rs879854	G	A	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	139912484	rs908832	A	G	9700.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr9	139913239	rs908828	T	G	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.68;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	139916471	rs142576618	A	ATGGCTCAGATGGGGGTG	1873.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=43.58;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	139923265	rs4880189	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	139926402	rs7469569	T	C	11752.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr9	139937795	rs10781535	T	C	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	139937799	rs10781536	G	A	7786.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	139943549	rs7390981	G	A	6077.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	139944312	rs45526831	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-1.117;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr9	139944509	rs10735661	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;QD=24.31;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	139944548	.	T	C	360	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5074;HP=3;HapScore=2;MGOF=38;MMLQ=28;MQ=45.67;NF=4;NR=14;PP=360;QD=21.9317340304;SC=CCGCCTGCCCTTACCCACGAC;SbPval=0.94;Source=Platypus;TC=25;TCF=10;TCR=15;TR=18;WE=139944556;WS=139944538;set=Platypus	GT:AD:AF:DP	1/0:7,18:0.72:25
chr9	139945051	rs7869520	A	G	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	139946804	rs2271867	C	G	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=2.993;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	139946905	rs34679600	C	CA	358.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	139946916	rs11145979	G	A	367.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	139960178	rs2176674	A	G	6520.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	139960894	rs72763246	C	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	139972900	rs10870176	T	C	17988.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr9	139973186	rs7390974	T	C	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	139973614	rs118178799	T	C	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	139973629	rs7390710	A	C	7046.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	139973652	rs7390711	A	G	5967.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	139975108	rs9314874	T	C	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	139977195	rs4390039	T	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	139981241	rs968732	GT	CG	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	139981627	rs968733	A	G	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	139983627	rs112923303	T	C	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	139990906	rs4880199	T	C	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	139994102	rs4880200	G	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	139995361	rs11425109	C	CA	1595.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	139996376	rs72382842	TACAC	T	40122.73	.	AC=2;AF=1.00;AN=2;DB;DP=928;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr9	139996653	rs144166648	ACG	A	738.73	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:541,61:0.10:602
chr9	139996691	.	ACATT	A	2968	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=2;MGOF=50;MMLQ=23;MQ=49.52;NF=95;NR=336;PP=2968;QD=20;SC=GGTGGTACACACATTCATGCT;SbPval=0.11;Source=Platypus;TC=634;TCF=107;TCR=527;TR=431;WE=139996747;WS=139996675;set=Platypus	GT:AD:AF:DP	1/0:203,431:0.68:634
chr9	139996739	.	A	ACG	2954	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=2;MGOF=50;MMLQ=23;MQ=50.21;NF=81;NR=294;PP=2954;QD=20;SC=ACACACATTCACTGTTGCAGG;SbPval=0.82;Source=Platypus;TC=560;TCF=149;TCR=411;TR=375;WE=139996747;WS=139996675;set=Platypus	GT:AD:AF:DP	0/1:185,375:0.67:560
chr9	139996768	.	T	TAC	2964	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=1;MGOF=77;MMLQ=23;MQ=48.75;NF=90;NR=267;PP=2964;QD=20;SC=TCGGTGGTGTTACACATTCAC;SbPval=0.82;Source=Platypus;TC=611;TCF=186;TCR=425;TR=357;WE=139996786;WS=139996754;set=Platypus	GT:AD:AF:DP	1/0:254,357:0.58:611
chr9	139996846	rs373532705	TACAC	T	7076.73	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:414,366:0.47:780
chr9	139996933	rs10118812	T	G	24887.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.128;ClippingRankSum=0.000;DB;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;MQRankSum=-0.178;QD=27.08;ReadPosRankSum=-0.346;SOR=0.256;set=HC	GT:AD:AF:DP	1/1:1,918:1.00:919
chr9	139997001	rs72108373	TACAC	T	36167.73	.	AC=2;AF=1.00;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	1/1:4,845:1.00:849
chr9	139997281	.	TACAC	T	2968	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=1;MGOF=79;MMLQ=22;MQ=40.13;NF=273;NR=889;PP=2968;QD=20;SC=TCGGTGGTGTTACACACATTC;SbPval=0.51;Source=Platypus;TC=1932;TCF=455;TCR=1477;TR=1162;WE=139997304;WS=139997262;set=Platypus	GT:AD:AF:DP	0/1:770,1162:0.60:1932
chr9	139997293	rs142818580	C	T	28341.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=1035;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=24.014;QD=27.95;ReadPosRankSum=-5.876;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:202,812:0.80:1014
chr9	139997294	rs62584555	A	G	28341.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.847;ClippingRankSum=0.000;DB;DP=1035;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=24.052;QD=27.92;ReadPosRankSum=-5.750;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:203,812:0.80:1015
chr9	139997295	.	C	G	28341.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.604;ClippingRankSum=0.000;DP=1056;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=23.928;QD=27.92;ReadPosRankSum=-5.719;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:203,812:0.80:1015
chr9	139997563	.	A	ACATT	2968	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=1;MGOF=60;MMLQ=23;MQ=42.17;NF=88;NR=499;PP=2968;QD=20;SC=GGTGTTACACACATGCTGTTG;SbPval=0.92;Source=Platypus;TC=1359;TCF=281;TCR=1078;TR=587;WE=139997577;WS=139997550;set=Platypus	GT:AD:AF:DP	0/1:772,587:0.43:1359
chr9	139997591	.	GGT	G	2966	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=1;MGOF=59;MMLQ=24;MQ=41.92;NF=82;NR=426;PP=2966;QD=20;SC=GCAGGTCGGTGGTGTTACATT;SbPval=0.87;Source=Platypus;TC=1241;TCF=260;TCR=981;TR=508;WE=139997615;WS=139997581;set=Platypus	GT:AD:AF:DP	0/1:733,508:0.41:1241
chr9	139997630	.	G	GTGT	2964	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=1;MGOF=49;MMLQ=24;MQ=42.62;NF=87;NR=267;PP=2964;QD=20;SC=CAGGTCGGTGGTACACACATT;SbPval=0.48;Source=Platypus;TC=1071;TCF=261;TCR=810;TR=354;WE=139997654;WS=139997620;set=Platypus	GT:AD:AF:DP	0/1:717,354:0.33:1071
chr9	139997719	rs111877141	A	G	21460.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.091;ClippingRankSum=0.000;DB;DP=889;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=-0.069;QD=24.55;ReadPosRankSum=-0.593;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,873:1.00:874
chr9	140001341	rs5901117	G	GAAC	2479.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	140001978	rs12115325	C	A	8377.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr9	140002187	rs12000517	C	T	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	140002220	rs10117795	A	G	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	140002261	rs11790092	A	G	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	140002501	rs6420280	T	C	282.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	140002754	rs4880090	C	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	140002989	rs4880091	T	C	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	140006425	rs10747048	C	G	6933.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr9	140006491	rs10870180	C	T	7176.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	140008564	.	G	A	304.82	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr9	140008625	.	CCCCCGCCCGCGACCCCGCCCGGCACCCACGTGCCCCGCGA	C	1528.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.86;QD=44.96;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	140008750	rs10747049	G	C	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.48;QD=30.61;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	140008934	rs11145999	A	G	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	140040156	rs10870196	G	A	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	140051041	rs28687864	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	140051238	rs6293	A	G	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	140051376	rs1126442	G	A	9106.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr9	140055703	rs41290007	G	A	8190.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr9	140055876	rs10747050	G	A	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	140064315	rs7019671	C	A	2170.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.814;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.904;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=-0.463;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:1,85:0.99:86
chr9	140074578	rs55642373	C	T	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	140075181	rs73571568	G	C	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	140076358	rs28369482	G	A	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	140077639	rs11549105	G	A	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	140077729	rs28490558	G	A	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	140079522	rs11549106	G	A	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr9	140080499	rs3922734	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	140080583	rs3922735	G	A	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	140083320	rs11556579	G	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.62;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	140083320	.	GCG	CCA,CCG	406	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.29;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=24;MQ=60.0;NF=5,16;NR=13,23;PP=406,244;QD=25.5259930479;SC=CCGCCTCGCTGCGGGCATCGC;SbPval=0.89;Source=Platypus;TC=39;TCF=16;TCR=23;TR=18,39;WE=140083330;WS=140083310;set=Platypus	GT:AF:DP	0/1:0.46:39
chr9	140083322	.	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.049;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=4.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.679;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr9	140084376	rs11556580	G	A	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	140084485	rs3087779	G	A	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	140094605	rs9411313	C	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	140100224	rs7032361	A	G	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:91,60:0.40:151
chr9	140100317	rs113809617	C	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr9	140108915	rs149701237	CTG	C	4507.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	140110274	rs7390663	T	C	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	140120396	rs6606566	C	T	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	140130606	rs28542318	A	T	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	140130882	rs28591989	A	C	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr9	140139757	rs9775264	G	A	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	140142299	rs9330201	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr9	140147094	rs71387813	C	CCT	1663.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,71:0.48:149
chr9	140147152	rs28376526	C	G	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:104,146:0.58:250
chr9	140148051	rs28631372	A	G	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr9	140157429	rs13294457	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr9	140157460	rs13296455	T	C	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr9	140157701	rs56368095	C	T	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=1.762;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:45,42:0.48:87
chr9	140158650	rs9695897	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr9	140158871	rs13295537	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr9	140161334	rs9330192	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr9	140161631	.	TGTGGGGCTGAG	T	2987	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=3;HapScore=2;MGOF=5;MMLQ=24;MQ=60.11;NF=2;NR=13;PP=2987;QD=20;SC=CAGGGGTCGGTGTGGGGCTGA;SbPval=0.83;Source=Platypus;TC=53;TCF=11;TCR=42;TR=15;WE=140161655;WS=140161621;set=Platypus	GT:AD:AF:DP	1/0:38,15:0.28:53
chr9	140161634	.	GGGGCT	G	1566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=8.579;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.331;QD=17.60;ReadPosRankSum=0.296;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:41,48:0.54:89
chr9	140161641	.	AGGTGGG	A	1560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=7.019;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.315;QD=17.74;ReadPosRankSum=0.310;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:40,48:0.55:88
chr9	140161647	.	G	A	2374	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=3;HapScore=2;MGOF=5;MMLQ=28;MQ=60.17;NF=13;NR=16;PP=2374;QD=83.0610762947;SC=GCTGAGGTGGGGCTGAGGTGG;SbPval=0.31;Source=Platypus;TC=78;TCF=41;TCR=37;TR=29;WE=140161655;WS=140161621;set=Platypus	GT:AD:AF:DP	1/0:49,29:0.37:78
chr9	140161871	rs9802270	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.910;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr9	140161909	rs9802698	G	T	289.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=0.405;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr9	140167022	rs3204123	G	A	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr9	140202194	rs13288421	T	C	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr9	140218025	.	C	CTGCCGACACCTCACCCCGGACCACGAGGGATGCTT	787.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=4.140;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.485;QD=23.17;ReadPosRankSum=-4.619;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr9	140242634	rs4078069	G	C	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=4.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-1.631;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:101,91:0.47:192
chr9	140243431	rs4078072	C	T	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr9	140243547	rs4078071	C	T	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:121,125:0.51:246
chr9	140245792	rs58444859	C	T	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:56,75:0.57:131
chr9	140246050	rs11534416	T	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr9	140247143	rs7020732	T	G	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=3.093;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr9	140249041	rs28417430	C	T	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:140,132:0.49:272
chr9	140250675	rs11507678	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr9	140250818	rs7389423	C	T	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.188;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:44,61:0.58:105
chr9	140262218	rs11533157	T	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	140267490	rs143312119	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr9	140267650	rs28688091	T	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr9	140268183	rs6606585	T	C	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	140277826	rs13291830	C	T	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	140289696	rs9695232	A	C	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	140320792	rs72765154	G	C	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	140322404	rs28580293	C	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	140322640	rs28553346	C	T	273.79	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr9	140323251	rs11535664	C	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	140323906	rs9697151	G	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr9	140328077	rs35138580	C	T	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	140329265	rs28725243	G	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	140330976	rs13297080	T	C	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	140331833	rs9414731	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	140332478	rs6606582	A	G	9850.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:2,383:0.99:385
chr9	140344328	rs28699612	G	A	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	140349874	rs28585539	C	G	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	140356374	rs4962240	C	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:47,55:0.54:102
chr9	140357848	rs2275781	G	C	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	140357972	rs1891627	A	G	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	140374861	rs1891630	A	G	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	140400275	rs3750381	T	C	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	140409726	rs843967	T	C	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr9	140441177	rs2254149	A	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr9	140441206	rs1615822	A	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr9	140441511	rs79470506	G	C	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr9	140483076	rs2259657	G	A	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.658;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:18,36:0.67:54
chr9	140509302	rs35018943	G	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:136,133:0.49:269
chr9	140605202	rs11791658	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=12.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.74;ReadPosRankSum=0.380;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr9	140605334	rs7039441	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,48:0.46:105
chr9	140611436	rs3812497	T	C	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr9	140638461	rs1129768	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr9	140638607	rs4979643	A	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr9	140646647	rs10867058	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-0.161;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr9	140648742	rs45450992	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr9	140656980	rs4876941	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr9	140686373	rs10867072	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	140693181	rs4876947	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr9	140695576	rs7871917	A	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	140705796	rs11789631	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr9	140706127	rs11789684	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr9	140708768	rs7851955	T	G	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:94,89:0.49:183
chr9	140710603	rs4876902	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr9	140740856	.	A	C	399	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=4;HapScore=2;MGOF=20;MMLQ=24;MQ=51.76;NF=14;NR=7;PP=399;QD=20.6557720261;SC=CTGTGCGCGCACCCACTGGAG;SbPval=0.66;Source=Platypus;TC=22;TCF=14;TCR=8;TR=21;WE=140740864;WS=140740846;set=Platypus	GT:AD:AF:DP	1/1:1,21:0.95:22
chr9	140740886	.	A	T	608	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=24;MQ=54.8;NF=22;NR=10;PP=608;QD=20.0866003921;SC=TCCCCCAGGAATCCTCCTAAG;SbPval=0.51;Source=Platypus;TC=33;TCF=23;TCR=10;TR=32;WE=140740894;WS=140740876;set=Platypus	GT:AD:AF:DP	1/1:1,32:0.97:33
chr9	140772434	rs187204220	G	A	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.491;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.073;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:121,38:0.24:159
chr9	140772442	rs191962352	G	A	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.232;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-0.027;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:138,43:0.24:181
chr9	140773764	rs41289997	C	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr9	140777299	rs71238527	G	T	5266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=4.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=3.289;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:151,141:0.48:292
chr9	140777306	rs4422842	C	G	5102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.565;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=4.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.04;ReadPosRankSum=1.867;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:136,132:0.49:268
chr9	140777370	rs1110146	A	C	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:21,94:0.82:115
chr9	140917904	rs192692322	G	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr9	141008876	rs2229948	C	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	141015869	rs35987844	C	CT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=-2.194;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr9	141016262	rs2278973	T	G	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr9	141069844	rs62581042	T	C	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=8.939;MLEAC=1;MLEAF=0.500;MQ=52.69;MQRankSum=-0.346;QD=7.08;ReadPosRankSum=-1.167;SOR=1.614;set=HC	GT:AD:AF:DP	0/1:59,35:0.37:94
chr9	141069905	rs71485051	C	T	2676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-3.330;QD=13.66;ReadPosRankSum=2.506;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:117,79:0.40:196
chr9	141069927	rs71485052	C	A	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:138,72:0.34:210
chr9	141069952	rs9410185	T	C	8827.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.67;QD=38.38;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	141069977	.	G	GAGA	919.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=12.358;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-1.949;QD=8.36;ReadPosRankSum=1.492;SOR=0.182;set=HC	GT:AD:AF:DP	0/1:67,43:0.39:110
chr9	141069978	.	C	A	1767	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=2;MGOF=56;MMLQ=24;MQ=53.45;NF=43;NR=64;PP=1767;QD=16.8389832948;SC=GCCAGCGGTGCGACCCCCGTC;SbPval=0.43;Source=Platypus;TC=201;TCF=77;TCR=124;TR=107;WE=141069986;WS=141069968;set=Platypus	GT:AD:AF:DP	1/0:94,107:0.53:201
chr9	141069978	.	C	CCCCCGTCCTTCTCCCACCCAACGTGTACCACCACGAGGCCAGCGGTGA	4227.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=10.303;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-2.055;QD=24.02;ReadPosRankSum=1.947;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:64,112:0.64:176
chr9	141069993	rs200245769	C	T	2743.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr9	141070116	rs376870088	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=13.424;MLEAC=1;MLEAF=0.500;MQ=50.54;MQRankSum=-2.563;QD=0.88;ReadPosRankSum=-1.415;SOR=3.600;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr9	141070125	rs10867114	C	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:5,33:0.87:38
chr9	141070283	rs7868693	T	C	3290.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.355;MLEAC=2;MLEAF=1.000;MQ=49.35;MQRankSum=-2.242;QD=22.69;ReadPosRankSum=-0.427;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:8,137:0.94:145
chr9	141070335	rs7868705	T	G	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	141071672	.	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=8.036;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-4.580;QD=1.75;ReadPosRankSum=-2.559;SOR=1.504;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr9	141071738	rs199786532	GC	G	562.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr9	141071755	rs2507130	T	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr10	95096	rs11251929	A	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr10	95226	rs6560829	A	T	2041.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.260;MLEAC=2;MLEAF=1.000;MQ=59.51;MQRankSum=5.003;QD=42.54;ReadPosRankSum=0.869;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr10	95229	rs6560830	C	T	2041.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.260;MLEAC=2;MLEAF=1.000;MQ=59.51;MQRankSum=5.003;QD=42.54;ReadPosRankSum=0.867;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr10	95248	rs56184415	C	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr10	95261	rs113214939	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr10	282897	rs4600135	C	T	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	285200	rs7919436	T	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	285479	rs10655220	G	GTGTT	7781.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	288184	rs34123561	G	GAA	1848.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;QD=30.81;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	292927	rs2303990	C	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	294165	rs10903752	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	294953	rs1017361	A	G	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	329182	rs66861796	TG	T	819.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr10	329188	rs45445697	G	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.489;QD=6.44;ReadPosRankSum=0.156;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr10	329191	rs371065533	GC	G	306.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:39,11:0.22:50
chr10	370977	rs3123241	A	G	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	375570	rs3832678	GGGAGCTCAGCAAGGCT	G	1394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.355;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.838;QD=11.82;ReadPosRankSum=0.223;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:78,40:0.34:118
chr10	387060	rs7904155	G	A	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	394714	rs4880610	G	A	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	395266	rs4880611	T	C	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	395463	rs4242754	G	A	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	404023	rs180830620	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr10	410825	rs10795053	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	412449	rs1133113	A	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:89,44:0.33:133
chr10	428503	rs4881200	A	G	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	429903	rs11289740	GA	G	431.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.560;QD=13.49;ReadPosRankSum=-1.203;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr10	435880	rs4881219	G	C	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr10	436848	rs10904093	A	G	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:91,46:0.34:137
chr10	444997	rs6560836	C	T	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:101,156:0.61:257
chr10	445061	rs6560837	C	T	8861.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr10	459940	rs4881274	G	A	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:65,113:0.63:178
chr10	461912	rs66682704	TC	T	1319.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr10	468748	rs4881290	C	T	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	518345	rs374188427	A	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr10	518547	rs10610683	ACT	A	5510.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:54,137:0.72:191
chr10	530644	rs1539231	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	687569	rs1631975	C	T	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	696237	rs10904535	G	A	5309.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:87,217:0.71:304
chr10	708192	rs3853289	A	G	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	859270	rs3763722	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr10	875287	rs17159950	T	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr10	890871	rs41289277	C	T	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:62,116:0.65:178
chr10	910225	rs35968821	A	G	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:174,92:0.35:266
chr10	1018585	rs4880745	T	G	7750.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:3,269:0.99:272
chr10	1038339	.	C	CA	37.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=5.32;ReadPosRankSum=0.792;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr10	1042023	rs10665098	A	AAAC	6855.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	1043058	rs1250887	T	C	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	1046712	rs2306409	G	A	7396.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	1054276	rs10904595	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr10	1061625	.	GCTGAGCA	G	1174	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=37;MMLQ=24;MQ=58.73;NF=10;NR=13;PP=1174;QD=52.1739130435;SC=GGTCCTGAGCGCTGAGCACTG;SbPval=0.37;Source=Platypus;TC=26;TCF=13;TCR=13;TR=23;WE=1061639;WS=1061615;set=Platypus	GT:AD:AF:DP	1/1:3,23:0.88:26
chr10	1065710	rs1044261	C	T	4137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=1.613;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:132,194:0.60:326
chr10	1068639	rs13377037	C	T	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:47,114:0.71:161
chr10	1068802	rs3750729	G	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr10	1070461	rs3793777	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr10	1081791	rs146706331	G	GCCTGGCCCA	7209.73	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:95,161:0.63:256
chr10	1081944	rs11396609	G	GT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=1.838;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:120,25:0.17:145
chr10	1087454	rs112832376	TA	T	586.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr10	1087551	rs12768746	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	1089616	rs11250238	T	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	1093992	rs4880759	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	1120236	rs41299206	T	C	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr10	1126293	rs7087381	T	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr10	1126619	rs7084283	A	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	1142208	rs10794716	T	C	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	1230968	rs2271275	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr10	1232500	rs7924253	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:185,79:0.30:264
chr10	1245893	rs1983028	A	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	1263076	rs3750677	C	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:58,82:0.59:140
chr10	1279598	rs67687625	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr10	1421516	rs10794748	A	G	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:206,102:0.33:308
chr10	3124516	rs4881074	G	A	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	3143283	rs55882340	T	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	3143643	rs4881080	A	C	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	3145885	rs10903966	T	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	3145906	rs11251719	A	C	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	3146155	rs2306293	C	G	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:80,153:0.66:233
chr10	3146180	rs2306294	C	T	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	3147096	rs4424569	C	G	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.81;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	3147099	rs4469783	G	A	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=4.654;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	3147192	rs4256893	G	A	6619.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	3147456	rs4271292	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	3149402	rs10903967	A	G	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	3150973	rs1132173	C	T	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	3155173	rs7896691	C	T	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	3155217	rs6602023	T	C	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	3155237	rs6602024	A	G	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	3155263	rs7906901	T	C	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	3155408	rs3816700	C	T	6838.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr10	3155428	rs3816701	C	T	6637.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	3155540	rs4881085	A	G	9327.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr10	3155620	rs1052309	A	G	8691.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr10	3155753	rs4881087	G	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	3158848	rs7086902	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	3160904	rs3829911	C	T	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr10	3160917	rs3829913	T	C	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr10	3161131	rs3829914	C	T	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:35,92:0.72:127
chr10	3162033	rs6602025	T	C	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	3175347	.	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.888;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr10	3175541	rs3740613	C	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.691;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr10	3178865	rs543	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr10	3178905	rs7673	T	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=36.29;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	3178905	.	TGCT	AGCC,AGCT	233	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=21;MMLQ=24;MQ=60.36;NF=3,4;NR=8,19;PP=115,233;QD=15.3152613511;SC=CTGCCCCACCTGCTCCAGTGC;SbPval=0.3;Source=Platypus;TC=23;TCF=4;TCR=19;TR=11,23;WE=3178916;WS=3178895;set=Platypus	GT:AF:DP	0/1:0.48:23
chr10	3178908	rs542	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.193;QD=8.84;ReadPosRankSum=-1.246;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr10	3178964	rs71497863	GAATT	G	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;MQ=61.07;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	3179703	rs4881107	C	T	1412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=0.394;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:91,41:0.31:132
chr10	3179708	rs4881108	A	G	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.346;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=1.152;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:103,42:0.29:145
chr10	3179738	rs79334726	G	A	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:46,120:0.72:166
chr10	3180227	rs6901	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:65,25:0.28:90
chr10	3180298	rs10175	C	T	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	3180316	rs11414	T	C	5734.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	3180343	rs2388559	A	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:164,73:0.31:237
chr10	3181003	rs2279217	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr10	3181282	rs2279220	G	A	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:133,85:0.39:218
chr10	3183747	rs7094698	A	G	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:191,98:0.34:289
chr10	3185393	rs4881110	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr10	3185798	rs3736093	T	C	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:172,74:0.30:246
chr10	3186458	rs3752803	C	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:90,34:0.27:124
chr10	3186723	rs9423496	G	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr10	3187924	rs3758631	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr10	3189380	rs3740607	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:146,66:0.31:212
chr10	3190265	rs4881111	A	G	2200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=3.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-0.249;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:183,115:0.39:298
chr10	3190298	rs4881112	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:202,110:0.35:312
chr10	3199555	rs7086470	A	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.701;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr10	3200155	rs9423705	G	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.420;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr10	3200292	rs3182535	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:89,45:0.34:134
chr10	3201010	rs3814592	C	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr10	3201072	rs3814593	G	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr10	3201097	rs3814594	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:80,43:0.35:123
chr10	4867313	rs2961562	A	T	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	4868445	rs2924275	G	T	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	4868565	rs147185600	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr10	4872930	rs61745201	G	A	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:46,79:0.63:125
chr10	4873106	rs1005907	T	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.375;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr10	4877814	rs150127444	T	TTTTTG	1180.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:65,33:0.34:98
chr10	4879465	rs2961584	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	4881867	rs141011187	C	T	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:69,142:0.67:211
chr10	4883859	rs112765066	G	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr10	4884784	rs2924269	T	C	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	4887872	rs150361977	G	A	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:108,49:0.31:157
chr10	4889525	rs2961597	T	C	5503.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	4889732	rs74111762	C	T	3881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-0.552;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:85,175:0.67:260
chr10	5005761	rs141022982	A	T	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr10	5005855	rs116910432	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.58;QD=34.99;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	5005860	rs41305661	G	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.875;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.88;MQRankSum=1.169;QD=7.16;ReadPosRankSum=-1.235;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr10	5005941	rs28464583	C	A	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5006119	rs41305667	G	A	92.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.66;MQRankSum=0.524;QD=18.56;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr10	5008383	rs7908994	C	T	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:120,73:0.38:193
chr10	5008450	rs147876533	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr10	5009347	rs4445550	A	G	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	5009364	rs2904802	T	C	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	5009449	rs7076886	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	5010367	rs12250190	C	T	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.09;QD=29.30;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	5010572	rs1138600	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.68;QD=27.81;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	5010722	rs41314625	G	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQRankSum=-0.809;QD=20.05;ReadPosRankSum=1.045;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr10	5011278	rs76142681	G	A	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:32,70:0.69:102
chr10	5014545	rs67671072	T	TA	2174.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:71,114:0.62:185
chr10	5019959	rs8483	G	A	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	5032284	rs12774733	C	T	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:62,94:0.60:156
chr10	5041296	rs35767584	C	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.530;MLEAC=1;MLEAF=0.500;MQ=46.38;MQRankSum=0.567;QD=2.84;ReadPosRankSum=-1.148;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr10	5043504	rs67362530	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;MQ=59.86;set=Intersection	GT:AD:AF:DP	0/1:45,15:0.25:60
chr10	5045862	rs67165977	A	G	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.606;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.588;MLEAC=1;MLEAF=0.500;MQ=44.18;MQRankSum=-0.377;QD=18.52;ReadPosRankSum=0.807;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:27,48:0.64:75
chr10	5120157	rs4881396	G	T	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	5120227	rs11252921	C	T	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	5136499	rs3763676	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	5136651	rs12529	C	G	1943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.795;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:48,93:0.66:141
chr10	5138607	rs7741	G	A	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-2.735;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:93,49:0.35:142
chr10	5139685	rs12387	G	A	8429.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	5139815	rs2245191	C	A	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:42,78:0.65:120
chr10	5144562	rs35558480	C	CG	77.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr10	5147579	rs17155732	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.79;ReadPosRankSum=-0.524;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr10	5147909	rs2275928	G	A	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	5149413	rs11252951	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr10	5149427	rs10160019	T	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr10	5149703	rs3209896	G	A	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	5196273	rs1781930	A	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	5196479	rs1334471	C	T	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-3.813;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:206,59:0.22:265
chr10	5197881	rs1781931	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr10	5199934	rs1781935	G	C	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:94,158:0.63:252
chr10	5200076	rs11253019	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr10	5200638	rs1781937	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr10	5200739	rs5782810	T	TAGG	4866.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	5200861	rs2020172	C	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr10	5202060	rs1781940	C	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-0.708;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr10	5202104	rs2801889	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.06;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	5202221	rs41460145	G	A	2138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=0.458;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:51,98:0.66:149
chr10	5202241	rs1761599	C	T	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.45;SOR=1.712;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	5203864	rs11253021	C	T	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:107,62:0.37:169
chr10	5203944	rs11325738	AC	A	1081.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr10	5204676	rs7080497	A	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-1.338;SOR=0.050;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr10	5204928	rs7097295	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:131,56:0.30:187
chr10	5242346	rs7099651	G	A	10662.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr10	5244295	rs7083869	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr10	5244441	rs2151896	A	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-1.327;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:46,30:0.39:76
chr10	5246584	rs11253042	C	A	9021.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr10	5246670	rs1413781	A	C	6447.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	5254804	rs11253045	G	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.745;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr10	5255025	rs4880718	A	G	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	5258571	rs2050308	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	5258955	rs2050309	C	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	5260505	rs5782814	GAA	G	534.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=-0.097;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr10	5260553	rs1413622	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.437;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr10	5260611	rs72003850	TTCAC	T	3845.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:44,96:0.69:140
chr10	5260812	rs2398157	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	5435918	rs7097775	G	A	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:69,158:0.70:227
chr10	5436260	rs7910290	A	G	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:31,93:0.75:124
chr10	5436487	rs6601957	A	G	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr10	5437365	rs11253156	A	G	3557.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:52,154:0.75:206
chr10	5446632	rs10904491	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr10	5446794	rs7477466	C	T	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:51,84:0.62:135
chr10	5446942	rs4881435	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	5446965	rs4881436	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr10	5471020	.	T	C	482.77	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr10	5471200	rs4604777	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	5495157	rs11253185	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr10	5495218	rs4567355	T	C	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	5498248	rs4242790	G	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr10	5541181	rs10904516	T	C	3114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-0.593;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:176,88:0.33:264
chr10	5541181	.	TTC	CTT	2716	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=6;MMLQ=24;MQ=60.0;NF=43;NR=37;PP=2716;QD=20;SC=CCTGGCCTTCTTCGCCGCCGT;SbPval=0.53;Source=Platypus;TC=250;TCF=136;TCR=114;TR=80;WE=5541191;WS=5541171;set=Platypus	GT:AD:AF:DP	1/0:170,80:0.32:250
chr10	5541183	rs10904517	C	T	3114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-0.019;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:180,88:0.33:268
chr10	5541230	rs11546426	T	C	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:206,105:0.34:311
chr10	5558145	rs5782832	G	GC	6494.73	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:85,203:0.70:288
chr10	5558349	rs4072067	G	A	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=1.541;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:9,35:0.80:44
chr10	5682641	rs7896492	C	T	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	5682855	rs4427479	T	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.21;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	5682856	rs7893640	G	C	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.472;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:19,38:0.67:57
chr10	5684342	rs6602421	C	G	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	5684534	rs61006671	T	TA	183.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr10	5684616	rs56802263	G	GTT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.70;ReadPosRankSum=0.191;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	5693379	rs6602483	A	G	7154.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr10	5708360	rs75474563	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	5708420	rs6602613	T	C	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.48;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	5708422	rs76394459	A	T	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.64;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	5708434	rs56178329	C	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	5762766	rs201959475	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.281;QD=0.48;ReadPosRankSum=0.787;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:76,15:0.16:91
chr10	5766337	rs10737018	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	5766597	rs139204494	TAG	T	263.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	5781628	rs2254067	T	G	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:1,253:1.00:254
chr10	5781969	rs2797486	A	T	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr10	5784509	rs2797488	G	A	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	5788110	rs200661404	A	AT	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-0.713;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr10	5788608	rs2797491	G	C	10694.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr10	5790420	rs2669142	T	C	9586.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr10	5804455	rs3736462	A	G	230.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	5804474	rs59569509	G	T	275.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	5804531	rs2797501	G	A	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	5837038	rs10752110	T	C	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	5919947	rs2985043	C	T	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	5920121	rs1052420	T	C	7999.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,307:0.99:309
chr10	5922186	rs811561	T	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	5924942	rs617165	C	G	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr10	5925971	rs631947	C	A	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr10	5932187	rs2253422	C	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	5932475	rs10905405	T	C	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.77;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	5932491	rs10905406	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=2.477;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr10	5951025	rs595923	T	C	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	5966190	rs2274029	G	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	5966190	.	GCA	ACG	620	.	AC=2;AF=1.00;AN=2;BRF=0.05;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=24;NR=5;PP=620;QD=23.2230301677;SC=CTGCTCTTGCGCAGCTGCTTA;SbPval=0.78;Source=Platypus;TC=31;TCF=24;TCR=7;TR=29;WE=5966200;WS=5966180;set=Platypus	GT:AD:AF:DP	1/1:2,29:0.94:31
chr10	5966192	rs2274030	A	G	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	5967158	rs2669126	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	5978411	rs646406	T	C	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	5990899	rs4367845	C	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	5998285	rs3136627	G	A	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	6000259	rs17320853	T	C	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.232;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:98,63:0.39:161
chr10	6000409	rs12260233	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	6001696	rs3136618	C	T	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	6002368	rs2228059	T	G	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	6005674	rs3136614	G	A	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	6041873	rs11596136	C	T	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-0.096;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:149,74:0.33:223
chr10	6041923	rs10905599	T	C	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-0.542;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:151,91:0.38:242
chr10	6042034	rs10795731	C	T	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.56;SOR=1.674;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	6054804	.	C	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-1.016;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:218,36:0.14:254
chr10	6061277	rs7069976	G	A	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	6061781	rs10752175	T	C	7682.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	6062051	rs9804284	T	A	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr10	6063674	rs942200	T	C	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	6066200	rs11256369	C	G	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,90:0.68:132
chr10	6066462	rs12722574	G	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:88,35:0.28:123
chr10	6146947	rs376024631	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr10	6150828	rs374720400	GCTCTGTC	G	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	6150837	.	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	6150843	.	G	A	1051.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	6150844	.	C	A	1051.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	6150845	.	C	T	1051.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	6150848	rs75593307	ACCTG	A	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	6156118	rs10795823	T	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	6187115	rs11256972	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr10	6188591	rs7074372	A	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr10	6255817	rs2073629	T	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	6258015	rs2148293	T	C	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	6258052	rs2148294	G	A	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	6258300	rs2516622	A	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	6258311	rs2516623	T	C	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	6258796	rs2182412	T	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	6258840	rs5782881	GC	G	2783.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	6258937	rs2765827	A	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	6259239	rs2516624	G	A	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	6266956	rs4747951	G	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr10	6273170	rs35890201	C	CT	4606.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:36,254:0.88:290
chr10	6319702	rs59833671	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr10	6319884	.	G	GT	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.080;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr10	6368707	rs7087657	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=2.779;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr10	6368721	rs7074209	G	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.67;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	6368724	rs7074211	G	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.71;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	6368760	.	C	T	47	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=23;MQ=60.0;NF=0;NR=4;PP=47;QD=20.4428031368;SC=TTCGGGCACTCAGGACTTGTT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=4;WE=6368768;WS=6368750;set=Platypus	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	6392848	rs744254	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr10	6472962	rs601150	T	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	6498799	rs2296123	C	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr10	6504126	rs604663	T	C	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=1.212;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:56,28:0.33:84
chr10	6504136	rs678304	C	G	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=7.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-1.061;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:59,33:0.36:92
chr10	6504253	rs539103	A	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.195;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:100,47:0.32:147
chr10	6521147	rs643610	G	A	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:149,67:0.31:216
chr10	6527143	rs2236379	G	A	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:90,164:0.65:254
chr10	6527344	rs661891	A	C	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr10	6533625	rs527611	T	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr10	6533877	rs3815975	A	G	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr10	6533900	rs3815974	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr10	7230524	rs2462712	G	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.167;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr10	7230824	rs2762607	A	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr10	7239386	rs2762604	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.858;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:85,30:0.26:115
chr10	7285632	rs2248474	A	G	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	7318724	rs7075434	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr10	7318803	rs7097601	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr10	7319078	rs4338435	C	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.537;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=13.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=0.800;SOR=3.334;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr10	7319088	rs4611096	A	G	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.293;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=10.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=-0.680;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr10	7390300	rs1751658	A	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr10	7423923	.	C	CA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.858;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr10	7423960	rs2254756	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	7423984	rs2254760	G	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	7605067	rs3824658	C	T	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	7605077	rs61199416	TC	T	6052.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	7605101	rs10795551	A	G	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	7605457	rs10737022	G	A	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	7614918	rs11255194	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr10	7614936	rs10737023	T	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	7614959	rs12254204	T	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr10	7615195	rs4747517	C	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,44:0.36:121
chr10	7618501	rs2275068	A	G	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:64,111:0.63:175
chr10	7618686	rs2275069	T	G	5355.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:136,234:0.63:370
chr10	7618993	rs10458802	G	A	2263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.27;ReadPosRankSum=-0.702;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:26,57:0.69:83
chr10	7618997	rs10458803	G	A	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.10;ReadPosRankSum=-1.296;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:24,56:0.70:80
chr10	7621578	rs11255201	C	A	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:100,64:0.39:164
chr10	7622047	rs12256183	A	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	7622075	rs12262854	G	C	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	7629168	rs945149	C	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	7679393	rs6602256	C	T	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:80,140:0.64:220
chr10	7682870	rs17142884	C	G	6000.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:156,260:0.62:416
chr10	7697490	rs72779186	A	C	2017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.199;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.323;QD=13.92;ReadPosRankSum=-2.055;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:52,93:0.64:145
chr10	7747034	rs113278189	TA	T	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.490;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr10	7763661	rs7075296	A	G	9921.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr10	7769604	rs2277226	A	G	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	7773976	rs7098319	A	G	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	7776831	rs1926937	C	T	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	7785017	rs3736965	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	7788495	rs7912419	T	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	7795911	rs7342066	A	G	7601.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr10	7797903	rs138937189	C	CAACT	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	7804308	rs1980856	C	T	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	7811407	rs2296734	G	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	7829759	rs17553878	C	T	10267.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr10	7830319	rs1475406	G	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	7841225	rs112785663	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr10	7846009	.	C	T	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.759;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:169,59:0.26:228
chr10	7846152	rs914609	T	C	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	7866268	rs7070208	C	G	8769.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	8006798	rs4747647	A	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:200,106:0.35:306
chr10	8007559	rs10795583	GT	CC	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.653;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-1.280;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:81,40:0.33:121
chr10	8017033	rs58555368	CAAAAAAAAAAAAA	C	1254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.905;QD=21.63;ReadPosRankSum=-0.450;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:25,33:0.57:58
chr10	8019124	rs10795584	A	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-1.429;SOR=1.650;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr10	8050882	.	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.276;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.328;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr10	8093034	rs501764	G	T	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	8093185	rs485411	T	C	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	8106231	rs59622436	GT	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=1.049;QD=4.46;ReadPosRankSum=0.776;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr10	8111345	rs35348503	CT	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.712;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:108,33:0.23:141
chr10	8111409	rs422628	C	T	9061.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	8111621	rs406103	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:74,31:0.30:105
chr10	8115668	rs373223232	TA	T	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.300;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:137,61:0.31:198
chr10	8115908	rs11567941	G	A	13572.77	.	AC=1;AF=0.500;AN=2;DB;DP=903;set=Intersection	GT:AD:AF:DP	0/1:291,604:0.67:895
chr10	9449465	rs61843465	A	G	19715.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.62;QD=39.67;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,497:1.00:497
chr10	9449482	.	C	CACACAGAGCGCCCCAGCGGGGTCCTAGACACAGAGCGCCTCAGCGGGATCCTACACACAGAGCGCCTCAGCGGGGTCCTAG	22880.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.18;MQRankSum=-0.703;QD=48.79;ReadPosRankSum=1.116;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:3,466:0.99:469
chr10	9449607	.	C	CG	4427.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.10;MQRankSum=1.435;QD=40.25;ReadPosRankSum=-1.534;SOR=0.481;set=HC	GT:AD:AF:DP	1/1:4,106:0.96:110
chr10	9449615	rs377332692	A	G	4214.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.891;MLEAC=2;MLEAF=1.000;MQ=55.90;MQRankSum=2.086;QD=43.01;ReadPosRankSum=-1.317;SOR=0.332;set=HC	GT:AD:AF:DP	1/1:5,93:0.95:98
chr10	9449617	rs370924513	A	T	3931.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.907;MLEAC=2;MLEAF=1.000;MQ=55.92;MQRankSum=2.065;QD=43.21;ReadPosRankSum=-1.316;SOR=0.288;set=HC	GT:AD:AF:DP	1/1:5,86:0.95:91
chr10	9449620	rs111226405	C	G	3481.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.905;MLEAC=2;MLEAF=1.000;MQ=55.76;MQRankSum=1.988;QD=41.45;ReadPosRankSum=-1.770;SOR=0.319;set=HC	GT:AD:AF:DP	1/1:5,79:0.94:84
chr10	9449626	rs76028402	C	G	3032.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.014;MLEAC=2;MLEAF=1.000;MQ=55.67;MQRankSum=1.913;QD=40.43;ReadPosRankSum=-3.267;SOR=0.247;set=HC	GT:AD:AF:DP	1/1:5,70:0.93:75
chr10	9449628	.	A	C	2899.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.922;MLEAC=2;MLEAF=1.000;MQ=55.61;MQRankSum=1.891;QD=39.18;ReadPosRankSum=-3.517;SOR=0.261;set=HC	GT:AD:AF:DP	1/1:5,69:0.93:74
chr10	9449633	rs111900079	T	C	2514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.090;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.543;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=2.446;QD=43.36;ReadPosRankSum=-2.957;SOR=0.139;set=HC	GT:AD:AF:DP	0/1:6,52:0.90:58
chr10	9449637	rs78515525	T	G	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=7.454;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=2.162;QD=45.20;ReadPosRankSum=-3.359;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr10	9449643	.	G	C	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=11.974;MLEAC=1;MLEAF=0.500;MQ=50.40;MQRankSum=0.966;QD=35.66;ReadPosRankSum=-2.941;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr10	9449645	.	T	C	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.102;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=12.208;MLEAC=1;MLEAF=0.500;MQ=47.98;MQRankSum=0.061;QD=33.67;ReadPosRankSum=-3.277;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	9449646	.	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=12.208;MLEAC=1;MLEAF=0.500;MQ=47.98;MQRankSum=0.061;QD=23.17;ReadPosRankSum=-3.753;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	11047207	rs2773499	C	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr10	11047218	.	G	GGA	408.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.345;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr10	11290997	rs2653522	A	C	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	11299735	rs2277212	A	T	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	11308790	rs72051267	TTC	T	1503.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.813;MLEAC=2;MLEAF=1.000;MQ=60.76;MQRankSum=0.636;QD=28.37;ReadPosRankSum=1.072;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:3,50:0.94:53
chr10	11316813	rs67013685	TAGTG	T	1829.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	11316909	rs2244576	G	C	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	11316987	rs2244573	G	A	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	11330525	rs2277214	G	A	9779.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	11356093	rs5783207	T	TTTTG	3324.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	11362789	rs35548374	GT	G	2070.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.954;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-1.127;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:52,167:0.76:219
chr10	11504752	rs12570211	T	C	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:151,70:0.32:221
chr10	11505175	rs3740204	A	G	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.441;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:139,61:0.30:200
chr10	11505743	rs113611342	G	A	6014.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:128,260:0.67:388
chr10	11532758	rs882206	C	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr10	11654040	.	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=6.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.910;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr10	11784978	rs7076220	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	11789290	rs4750089	G	C	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	11789382	rs4750090	G	A	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	11789405	rs4750091	G	A	5893.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	11789511	rs4750092	C	G	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	11789637	rs4750093	G	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr10	11791741	rs58243400	CCCAGCAAT	C	1572.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=43.69;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	11791772	.	CTTTTTTTTTTTTTTTTT	C	1424	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=20;HapScore=1;MGOF=127;MMLQ=23;MQ=50.68;NF=0;NR=12;PP=1424;QD=118.916666667;SC=TGGTTTAGACCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=12;WE=11791796;WS=11791762;set=Platypus	GT:AD:AF:DP	1/0:2,12:0.86:14
chr10	11797322	.	CAAA	C,CA	3133.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;QD=23.74;SOR=1.203;set=HC	GT:AD:AF:DP	1/2:8,68,56:0.52,0.42:132
chr10	11797436	rs7899215	T	C	18831.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr10	11797467	rs7910140	G	A	15764.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr10	11797500	rs35986488	G	A	7463.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:165,331:0.67:496
chr10	11797619	rs902892	C	G	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	11805354	rs12258196	A	G	4082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=6.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.07;ReadPosRankSum=0.953;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:74,103:0.58:177
chr10	11805357	rs10906011	G	A	4076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=7.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.03;ReadPosRankSum=0.052;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:72,105:0.59:177
chr10	11912431	rs12253600	C	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	11978499	rs7921794	T	G	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:50,116:0.70:166
chr10	12020981	rs11257462	C	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr10	12021312	rs3740023	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr10	12068542	rs12415637	C	T	2212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-1.029;QD=6.20;ReadPosRankSum=-1.776;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:233,124:0.35:357
chr10	12068645	rs74864961	CT	C	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.927;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.151;QD=2.22;ReadPosRankSum=-0.221;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:77,37:0.32:114
chr10	12111090	rs1279138	T	C	5654.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	12123363	rs1722446	T	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr10	12123666	rs10906066	C	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr10	12123667	rs1722445	A	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr10	12126490	rs11257527	A	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr10	12129639	rs146741810	G	T	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,92:0.69:134
chr10	12131081	rs3740015	T	G	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:383,167:0.30:550
chr10	12140030	rs10906076	C	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=2.253;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr10	12143105	rs2062988	C	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:123,76:0.38:199
chr10	12148259	rs1701472	A	C	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	12148286	rs1615510	T	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	12149896	rs76263909	G	T	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-1.383;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:40,89:0.69:129
chr10	12149939	rs1722462	C	T	4982.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	12159647	rs2399771	A	G	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	12159844	.	GATCTCCCCTCTCCT	G	554	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5977;HP=2;HapScore=1;MGOF=3;MMLQ=28;MQ=59.75;NF=1;NR=17;PP=554;QD=33.1666666667;SC=AGGTGATGCAGATCTCCCCTC;SbPval=0.53;Source=Platypus;TC=24;TCF=1;TCR=23;TR=18;WE=12159870;WS=12159834;set=Platypus	GT:AD:AF:DP	1/0:6,18:0.75:24
chr10	12159845	rs34396265	ATCTCCCCTCTCC	A	1457.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=42.87;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	12159861	.	T	A	562	.	AC=2;AF=1.00;AN=2;BRF=0.1;FR=0.5977;HP=4;HapScore=1;MGOF=3;MMLQ=27;MQ=59.95;NF=1;NR=12;PP=562;QD=45.9054778882;SC=CCTCTCCTATTTTTATTTATT;SbPval=0.74;Source=Platypus;TC=20;TCF=2;TCR=18;TR=13;WE=12159870;WS=12159834;set=Platypus	GT:AD:AF:DP	1/1:7,13:0.65:20
chr10	12159861	.	T	TTA	51.92	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=25.96;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	12160596	rs56975355	T	C	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=0.138;QD=20.55;ReadPosRankSum=-0.244;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:10,35:0.78:45
chr10	12160602	rs11257543	T	C	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=45.75;SOR=3.570;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	12160606	rs11257544	T	C	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.02;QD=44.05;SOR=3.872;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	12160623	rs11257545	C	T	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	12191526	rs41291291	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr10	12191933	rs10466280	C	T	10117.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr10	12195881	rs2895501	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	12198019	rs3758376	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	12200125	rs4750175	C	T	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	12202866	rs10906092	A	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	12203197	rs2399784	C	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	12209752	rs6686	T	C	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr10	12209936	rs71513318	GT	G	1598.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	12214557	.	CAAAG	C	1583.73	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr10	12215870	rs35088067	CT	C	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.678;QD=9.79;ReadPosRankSum=0.000;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr10	12227067	rs2140660	C	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	12252217	rs2271804	G	A	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr10	12288302	rs36042706	A	G	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:84,146:0.63:230
chr10	12292286	rs12779647	C	G	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:55,97:0.64:152
chr10	12292344	rs10951	A	G	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:56,132:0.70:188
chr10	12292348	rs12590	G	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:132,56:0.30:188
chr10	12292454	rs1051055	A	G	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr10	12595037	rs2815629	G	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	12833003	rs10717134	TA	T	2772.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:8,144:0.95:152
chr10	12856057	rs10795984	G	A	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:29,77:0.73:106
chr10	12866356	rs2482023	A	C	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr10	12867598	rs1757051	C	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:158,62:0.28:220
chr10	12940377	rs10752280	T	C	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	12940455	rs10906249	A	G	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	13043157	rs367851997	CAG	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.541;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.132;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:61,9:0.13:70
chr10	13151224	rs2234968	G	A	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=2.223;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:151,69:0.31:220
chr10	13151354	rs10906303	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.374;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr10	13152504	rs34617995	GT	G	514.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=25.74;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	13152515	rs79529484	T	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr10	13158262	rs2244380	C	T	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	13164332	rs765884	T	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr10	13164596	rs489040	A	G	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	13166076	rs523747	A	G	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	13167860	rs676302	G	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	13175682	rs7086894	A	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	13178697	rs10906310	C	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:132,50:0.27:182
chr10	13206233	rs7090944	A	T	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:246,128:0.34:374
chr10	13212884	rs2147279	C	T	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	13214753	rs34630110	G	C	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr10	13214812	rs6602637	A	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	13217457	rs56401071	C	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,62:0.60:103
chr10	13224886	rs3765520	G	T	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr10	13225119	rs11258235	G	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,64:0.77:83
chr10	13230837	rs6602641	A	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr10	13231194	rs2296221	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr10	13233471	rs7916762	C	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr10	13237015	rs10796036	G	A	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	13239651	rs2274110	A	G	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=0.903;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:139,69:0.33:208
chr10	13239917	rs35803060	AT	A	140.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=2.203;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr10	13240887	rs4750317	G	C	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.860;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-1.199;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:54,32:0.37:86
chr10	13271513	.	G	GA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.256;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:78,22:0.22:100
chr10	13275510	rs7893239	C	G	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=0.114;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:23,50:0.68:73
chr10	13275514	rs4750327	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.32;SOR=1.833;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	13275553	rs3829925	T	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	13275643	rs4750328	G	A	4322.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:91,184:0.67:275
chr10	13275676	rs3829926	T	C	7782.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	13275691	rs10796042	G	T	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:199,89:0.31:288
chr10	13276179	rs942418	A	G	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	13276368	rs2399954	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.783;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr10	13320411	rs825625	A	T	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	13325946	rs648173	C	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr10	13330291	rs7900830	G	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr10	13334058	rs1408364	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	13337319	rs654536	A	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	13337330	rs654553	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	13337588	rs1747682	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	13340293	rs7916926	A	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	13340339	rs10796054	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	13341836	rs511959	G	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	13341900	rs512109	A	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	13361421	rs10906347	C	T	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	13364143	rs149378948	CT	C	366.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=0.653;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr10	13370315	rs3740211	C	T	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	13375906	rs10752297	T	C	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	13378445	rs2275128	A	G	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr10	13481427	rs12415754	T	A	5252.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:131,234:0.64:365
chr10	13483868	rs7902755	C	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.416;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr10	13489148	rs10675399	T	TGCAGA	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.814;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=10.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-0.040;SOR=2.398;set=HC	GT:AD:AF:DP	0/1:53,13:0.20:66
chr10	13489201	rs11408564	A	AT	1595.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:106,56:0.35:162
chr10	13494396	rs3832669	TAA	T	1074.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr10	13494594	rs2277222	T	C	4641.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:99,204:0.67:303
chr10	13534851	rs2251555	A	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:132,68:0.34:200
chr10	13538928	rs5783327	CA	C	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.682;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:42,38:0.47:80
chr10	13541724	rs113234105	T	TAAAAC	336.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:43,12:0.22:55
chr10	13570569	.	GGCGGCAGCGGCGGCA	G	1536.73	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	13570673	rs10906401	A	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=25.35;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	13633928	.	GT	G	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.573;QD=1.85;ReadPosRankSum=-0.335;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:116,45:0.28:161
chr10	13653490	rs2478121	C	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr10	13653653	rs1135102	A	G	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:171,95:0.36:266
chr10	13658335	rs2253308	G	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:144,72:0.33:216
chr10	13696570	rs10906442	A	G	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	13702668	rs10796105	T	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	13705298	rs10796108	G	T	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	13705307	rs55876188	ACT	A	2307.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	13717076	rs3814663	C	G	6413.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	13735587	rs737376	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr10	13735603	rs943090	G	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	13735685	rs200663128	CT	C	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.404;QD=3.34;ReadPosRankSum=0.759;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:75,50:0.40:125
chr10	13743517	rs1541004	G	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:50,133:0.73:183
chr10	13743646	rs1541005	G	C	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	13749257	rs377738435	GAC	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.435;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr10	13782110	rs11258567	A	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=4.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=1.789;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr10	13782124	rs10906462	A	G	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	13782605	rs6602679	G	A	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:168,69:0.29:237
chr10	13803866	rs17628770	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr10	13838604	rs3740121	A	G	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	13852967	rs77883999	A	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:29,95:0.77:124
chr10	14478462	rs10906676	A	G	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=0.065;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr10	14569998	rs199928757	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=7.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.753;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr10	14882060	rs3830599	AT	A	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.588;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr10	14920685	rs200159062	T	TG	135.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr10	14941055	rs7896464	T	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=-1.180;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	14941654	rs17353856	C	T	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:284,138:0.33:422
chr10	14974843	rs35927251	G	A	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:218,126:0.37:344
chr10	14974905	rs12768894	T	C	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:136,94:0.41:230
chr10	14976326	rs374055066	CA	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.538;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr10	14976414	rs7076862	G	A	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:210,125:0.37:335
chr10	15008493	rs4750568	A	C	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	15014369	rs1935401	C	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	15014418	rs1935400	C	G	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr10	15014440	rs1935399	A	G	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	15014698	rs4418687	C	T	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	15014702	rs4295952	A	G	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=3.570;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	15057374	rs2007712	G	A	2217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.818;QD=12.39;ReadPosRankSum=-0.658;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:73,106:0.59:179
chr10	15058862	.	GA	G	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.738;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr10	15106281	rs7075914	C	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.226;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr10	15106379	rs10796255	A	G	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:111,65:0.37:176
chr10	15106441	rs10906818	A	G	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:73,134:0.65:207
chr10	15120865	rs7092227	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr10	15151577	rs45444993	T	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr10	15154974	rs7072269	A	G	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	15161274	rs10906832	A	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr10	15197114	rs192034387	T	C	5794.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:158,268:0.63:426
chr10	15256757	rs11451379	C	CT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.532;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr10	15296572	rs3824620	A	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	15413071	rs192904368	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=1.283;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr10	15573050	rs1041135	A	G	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	15573205	rs9333240	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr10	15590372	rs9333229	G	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	15600271	rs2277204	A	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr10	15648104	rs2282384	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr10	15648243	rs2282383	C	T	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	15650401	rs3041592	TAC	T	434.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.17;ReadPosRankSum=-0.877;SOR=2.430;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr10	15685983	rs4748191	A	T	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	15701093	rs9333128	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr10	15703101	rs9333112	G	A	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,55:0.49:113
chr10	15713507	rs7100228	A	G	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:46,86:0.65:132
chr10	15713541	rs6602051	T	C	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	15713667	rs7100510	C	G	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	15729923	rs1954181	C	T	9854.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr10	15761527	rs9333070	T	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	15902303	rs2297882	A	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:45,97:0.68:142
chr10	16547058	rs7904014	A	G	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:221,116:0.34:337
chr10	16736977	rs3740173	T	C	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,34:0.33:102
chr10	16737165	rs72451149	G	GAA	320.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=10.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=1.416;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr10	16737166	rs3837313	G	A	1223.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.454;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=19.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.283;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:48,38:0.44:86
chr10	16737289	rs3740172	A	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr10	16796919	rs1049632	C	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=1.519;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr10	16806545	rs3765595	A	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:90,43:0.32:133
chr10	16878204	rs703062	T	C	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	16882518	rs703064	T	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	16943371	rs2796835	G	C	6630.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	16945905	rs5783520	TG	T	2019.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	16948177	rs780807	A	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	16949401	rs780805	G	A	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	16949447	rs780804	A	C	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	16967401	rs1276712	C	T	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	16967445	rs1276713	T	G	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	17007818	rs57634749	C	CT	1093.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	17007847	rs61151602	T	TA	2671.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	17008171	rs1687708	A	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=1.685;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	17008174	rs1687707	T	C	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	17008183	rs1687706	C	T	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.80;SOR=1.747;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	17024503	rs1801231	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	17024615	rs1801229	A	T	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	17026010	rs2291523	A	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	17026384	rs3012494	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	17032559	rs925522	A	C	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=4.863;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	17032559	.	ACA	CCG	1718	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=2;NR=31;PP=1718;QD=53.6808446928;SC=GGGCAACAGCACATGGAAAAT;SbPval=0.58;Source=Platypus;TC=34;TCF=2;TCR=32;TR=33;WE=17032569;WS=17032549;set=Platypus	GT:AD:AF:DP	1/1:1,33:0.97:34
chr10	17032561	rs925523	A	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=4.863;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	17110474	rs4747297	C	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	17110595	rs10795440	G	A	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	17113563	rs1801225	C	T	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	17141952	rs1033765	C	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	17146667	rs4748353	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	17147521	rs1801224	G	T	8036.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr10	17156151	rs1801222	A	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	17157630	rs2295813	C	T	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	17164760	rs11409967	A	AC	2318.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	17171265	rs2281648	G	C	5242.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	17195428	rs2273736	G	C	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	17199419	rs2295810	C	G	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	17203598	rs151076824	AAAAGT	A	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	17204246	rs111781208	TA	T	1595.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=4.896;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.236;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:21,106:0.83:127
chr10	17204247	rs10904892	A	T	37.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=6.250;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=0.30;ReadPosRankSum=-1.371;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:107,21:0.16:128
chr10	17204248	rs200006483	A	T	1427.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.587;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=11.15;ReadPosRankSum=0.982;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:39,89:0.70:128
chr10	17210822	rs17464824	A	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr10	17243406	rs1885395	C	G	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	17243480	rs1885394	T	A	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	17271400	rs3758410	G	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr10	17272903	rs5783538	AT	A	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=1.385;QD=4.32;ReadPosRankSum=0.358;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr10	17276066	rs57465155	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr10	17278171	rs165531	C	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr10	17365228	.	G	GCA	88	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=58.44;NF=0;NR=3;PP=88;QD=31.3333333333;SC=ACATATGCGCGCACACACACA;SbPval=1.0;Source=Platypus;TC=18;TCF=6;TCR=12;TR=3;WE=17365236;WS=17365218;set=Platypus	GT:AD:AF:DP	1/0:15,3:0.17:18
chr10	17495619	rs45462798	T	A	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:50,114:0.70:164
chr10	17636182	rs2272144	G	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	17636309	rs1053926	G	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.653;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr10	17645814	rs2252808	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	17657867	rs11254688	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=-1.732;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr10	17658996	rs11254691	T	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr10	17659131	rs11254692	C	A	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	17659149	rs7895850	C	G,T	3585.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=83;set=Intersection	GT:AF:DP	1/2:0.69,0.31:83
chr10	17702640	rs10795500	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr10	17747812	rs10904996	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr10	17750635	rs2688791	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr10	17756596	rs12221	T	C	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:162,80:0.33:242
chr10	17891705	rs1926736	A	G	7342.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	18122716	rs111490411	A	G	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.826;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=3.630;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-3.440;QD=3.90;ReadPosRankSum=0.362;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:233,79:0.25:312
chr10	18138386	.	G	A	789.77	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	18198213	.	A	AT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-3.625;QD=2.21;ReadPosRankSum=2.195;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr10	18242304	rs691112	T	C	6137.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	18254606	rs691513	C	A	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.627;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:116,45:0.28:161
chr10	18266989	rs2478568	G	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.116;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:126,58:0.32:184
chr10	18276682	rs10508555	G	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr10	18331480	rs16916794	A	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr10	18430220	rs12572321	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr10	18550450	rs951046	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	18550887	rs12261375	T	C	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:113,82:0.42:195
chr10	18551154	rs10764369	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	18795596	rs10741088	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr10	18816633	rs4314963	C	T	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:75,129:0.63:204
chr10	18825176	rs35936908	T	TC	939.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=10.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.131;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:16,47:0.75:63
chr10	18828371	rs2228645	C	T	8031.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:178,349:0.66:527
chr10	18828663	rs4747352	G	T	2382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.791;QD=20.72;ReadPosRankSum=0.104;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:43,72:0.63:115
chr10	18828669	rs141925255	GTT	G	1931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=19.13;ReadPosRankSum=-1.828;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:38,63:0.62:101
chr10	18834797	rs375322555	TA	T,TAAAAAAAAA	137.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=16;set=Intersection	GT:AF:DP	0/1:0.69:16
chr10	18836957	rs4747353	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr10	18840919	rs12767546	T	A	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr10	18875109	rs12772522	G	A	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr10	18898701	rs4748493	T	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr10	18898729	rs34349692	G	GT	524.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr10	18898960	rs4748494	A	G	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr10	18903281	rs11405681	C	CA	1184.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:6,62:0.91:68
chr10	18903605	rs4636555	A	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	18931512	rs7907153	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr10	18931580	rs7897159	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	18937579	rs45468894	A	AAAG	1479.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr10	18940185	rs140572895	G	GT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.210;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:91,19:0.17:110
chr10	18957699	rs34027786	CT	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.697;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr10	19355918	rs72787427	A	G	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr10	19376734	rs112293611	G	GT	1532.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr10	19392857	rs10159517	T	C	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,86:0.68:126
chr10	19417181	rs11008573	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:119,61:0.34:180
chr10	19492702	rs16918344	C	T	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:185,97:0.34:282
chr10	19492832	rs7476259	A	C	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:154,81:0.34:235
chr10	19493117	rs72786543	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr10	19493215	rs202203955	T	TG	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.688;QD=9.35;ReadPosRankSum=1.206;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr10	19493309	rs10508578	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:96,42:0.30:138
chr10	19493993	rs4601653	G	C	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.153;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:151,52:0.26:203
chr10	19494310	rs7090927	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.483;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr10	19498278	rs2358355	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:179,104:0.37:283
chr10	19498722	rs2245136	A	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr10	19546796	rs10763903	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr10	19546877	rs10508582	C	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr10	19571941	rs2499066	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:108,43:0.28:151
chr10	19572207	rs4748570	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr10	19616735	rs1577289	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	19620407	rs7100382	A	C	6417.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	19620439	rs7100403	A	G	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	19620559	rs7082205	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	19636869	rs1609746	G	T	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	19637088	rs1577307	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	19641035	rs10827306	T	C	6750.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	19641231	rs7092566	A	G	11416.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	19641239	rs10616221	CTG	C	10791.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	19678286	rs10763974	C	T	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	19678497	rs10763975	G	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	19678602	rs7896087	T	C	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	19739459	rs6415957	T	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	19777982	rs72788548	G	A	4507.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:122,202:0.62:324
chr10	19778056	rs2151234	G	A	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:71,137:0.66:208
chr10	19778072	rs2184035	A	G	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	19820077	rs117225806	C	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	19884264	rs10827628	G	A	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	19896830	rs7909976	C	A	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	19904870	rs10580913	ATT	A	2524.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	19904879	rs62881061	T	G	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	20105936	rs989767	T	C	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr10	20105996	rs63234960	TGGC	T	4912.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:51,123:0.71:174
chr10	20290956	rs1409344	T	A	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	20336112	rs10740961	G	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	20357050	rs7911756	G	T	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,87:0.69:127
chr10	20357233	rs7912036	G	T	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:37,86:0.70:123
chr10	20436838	rs4626974	G	C	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:132,76:0.37:208
chr10	20436875	rs11815026	G	A	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:62,91:0.59:153
chr10	20500592	rs16920092	T	C	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:74,152:0.67:226
chr10	20500710	rs12259741	G	A	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	20506326	rs12783379	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:92,48:0.34:140
chr10	20506418	rs3817405	G	A	1735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=2.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=1.124;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:201,104:0.34:305
chr10	20507790	rs11011879	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr10	20534333	rs2778979	A	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	20568524	rs2681949	T	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	21076100	rs2296606	C	A	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,61:0.62:99
chr10	21076285	rs2697027	C	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:188,83:0.31:271
chr10	21104694	rs4748727	A	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr10	21108247	rs1006362	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr10	21112137	rs4748728	A	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	21115332	rs1409348	T	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.095;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr10	21115608	rs10828139	A	C	66.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	21141469	rs703089	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	21148584	rs4748729	C	A	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	21157492	rs2296609	T	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	21157763	rs5783755	CA	C	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr10	21169923	rs16921213	T	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr10	21176945	rs703100	G	A	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	21177156	rs67288319	GA	G	1341.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=24.40;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	21185821	rs788971	A	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	21414892	rs625223	C	G	5214.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:108,228:0.68:336
chr10	21415006	rs11591355	T	C	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:55,153:0.74:208
chr10	21435340	rs72102767	ACACT	A	11852.73	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:138,299:0.68:437
chr10	21461232	rs35856892	G	A	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr10	21461410	rs11413698	G	GA	1221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.128;QD=7.99;ReadPosRankSum=-0.935;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:59,94:0.61:153
chr10	21785665	rs200550375	GC	G	5425.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:60,201:0.77:261
chr10	21805466	rs112207161	C	CCCTCCT	3736.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr10	21806019	.	A	AGGC	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=4.226;QD=4.60;ReadPosRankSum=-0.666;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr10	21806832	rs946711	A	C	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	21827796	rs1802669	G	A	9489.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr10	21884471	rs11592565	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	22193422	rs792455	T	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr10	22208630	rs2807978	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	22498749	rs2478476	A	T	9680.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr10	22826093	rs1053454	A	C	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	22828829	.	AGAGAGAGAGAGG	A	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=1.254;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:46,5:0.10:51
chr10	22828833	.	AGAGAGAGG	A	217.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.078;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr10	22828835	rs146089705	AGAGAGG	A	488.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.788;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.275;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr10	22830719	rs943192	G	C	10418.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr10	22839463	rs10047326	C	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	22856946	rs2296624	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr10	22862487	rs11013052	C	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.868;SOR=1.777;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr10	23003226	rs1132816	A	G	8298.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr10	23220883	rs12360508	T	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr10	23244917	rs11013203	C	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr10	23297301	rs11817610	C	T	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	23297336	rs11819616	A	T	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	23303253	rs1054052	T	A	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	23408139	rs2296468	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	23408278	rs7427	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:84,50:0.37:134
chr10	23482635	rs7918487	T	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	23528557	rs7075896	C	A	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=0.469;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:47,90:0.66:137
chr10	23592468	rs4439422	G	C	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=0.134;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr10	23611188	rs5783834	TATTA	T	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	23622202	rs4259746	G	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	23632970	rs11013408	T	G	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	23633025	rs56317783	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=2.588;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr10	23633566	rs2036917	C	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	24498403	rs72774807	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	24564653	rs11014002	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr10	24564831	rs10764458	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	24564859	rs17583862	A	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr10	24721946	rs2274831	A	C	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr10	24722200	rs3215904	G	GT	439.92	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr10	24784014	rs11341951	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=3.280;QD=0.51;ReadPosRankSum=-0.985;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr10	24790393	rs1112284	A	G	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	24790491	rs2366916	GC	TT	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	24810663	rs2297330	C	A	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	24813454	rs10828663	G	A	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:274,136:0.33:410
chr10	24831505	rs867040	G	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr10	24873369	rs1127893	C	G	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:36,82:0.69:118
chr10	24878042	rs9663520	C	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr10	24878129	rs7478260	G	A	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=-0.307;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:40,64:0.62:104
chr10	24879281	rs10734053	A	G	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	24880712	rs10828678	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr10	24889901	rs3748221	T	G	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:81,148:0.65:229
chr10	24908686	rs3748222	T	C	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:66,140:0.68:206
chr10	25140411	rs1326192	G	C	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.32;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	25273311	rs5783912	G	GA	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=1.959;QD=6.93;ReadPosRankSum=1.130;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr10	25273988	rs2279547	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr10	25313818	rs7086282	C	T	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:58,82:0.59:140
chr10	25701341	rs2480345	C	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	25755734	.	CAT	C	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=2.724;QD=7.65;ReadPosRankSum=-1.703;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr10	25877859	rs144466352	TAAAC	T	1773.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,44:0.80:55
chr10	25888180	rs10828833	A	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr10	26286367	rs7911700	G	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	26310410	rs3737275	T	C	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	26310679	rs17666079	A	C	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	26312824	rs1339814	G	A	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	26355771	rs3824703	C	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	26355862	rs3824702	G	T	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	26355872	rs3824701	A	G	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.51;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	26355906	rs3824700	G	A	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	26355992	rs3824699	A	G	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	26356014	rs3824698	CA	TG	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	26356037	rs3824696	C	T	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	26356066	rs3824695	C	T	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	26357625	rs3817421	T	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	26357747	rs35379457	CG	TA	12154.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	26357820	rs3817419	C	T	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	26359180	rs3758441	T	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	26359200	rs3834403	T	TA	2399.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	26417531	rs17739425	T	G	65.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	26436287	rs2368158	G	T	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	26443646	rs3818956	G	A	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	26446312	rs3758449	G	A	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	26457536	rs1342320	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	26462790	rs3740232	G	A	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	26463043	rs3740231	A	T	7029.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr10	26463130	rs1999240	C	A	9193.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	26463569	rs3758448	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	26463587	rs3758447	C	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	26465923	rs150893642	CAGTTTTTTT	C	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr10	26781355	rs1775245	T	C	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	26781388	rs1775246	G	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	26790136	rs812007	T	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:66,23:0.26:89
chr10	26802633	rs202232214	AT	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.560;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr10	26825151	rs71521689	GA	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.679;QD=3.24;ReadPosRankSum=-0.761;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr10	26986932	rs2448114	T	C	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	26990849	rs1677726	T	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	26991037	rs1677725	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	26991045	rs1780186	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	26991067	rs71403882	CG	C	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	26991179	rs1780185	G	A	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	26993597	rs34296355	AT	A	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr10	26994150	rs1780192	A	C	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=-0.108;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:66,43:0.39:109
chr10	26998739	rs2368183	G	C	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:135,65:0.33:200
chr10	27009334	rs1780196	A	G	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	27031214	rs10764638	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	27031392	rs34974619	AGATT	A	5409.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	27037745	rs146846937	GAC	G	4407.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	27054375	rs7915128	C	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	27059608	rs1324637	C	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	27128593	rs201513592	A	AT	616.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=47.44;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	27128595	.	A	AT	706.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=50.48;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	27128596	rs76565453	C	A	715.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=44.74;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	27128635	rs10829091	G	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	27128828	rs10829092	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	27128861	rs10829093	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	27128878	rs10829094	G	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	27324806	rs200016821	G	GA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.240;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr10	27326014	rs11015469	C	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	27326999	rs7096505	T	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	27366192	rs11015504	A	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=7.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.310;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:59,26:0.31:85
chr10	27368126	rs3737055	A	C	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.29;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	27371623	rs10829173	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	27371647	rs10829174	T	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	27375377	rs10443987	A	T	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	27382240	rs2297147	T	C	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	27389197	rs7897309	T	C	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	27400861	rs9833	G	A	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	27405310	rs2480718	C	G	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	27405331	rs7901976	C	T	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	27409555	rs10829190	G	A	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	27436295	rs3780926	A	C	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	27444303	rs3824593	G	A	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	27444328	rs7919803	CT	AC	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	27444344	rs7907988	T	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	27454111	rs7068375	A	T	8863.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	27456003	rs788238	G	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	27459670	rs1981296	C	T	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	27461953	rs6482600	T	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	27475444	rs10741130	T	C	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr10	27475494	rs10764686	T	C	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	27497074	rs7919523	C	T	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	27506854	rs1775355	C	T	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	27508758	rs10764690	T	C	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:204,85:0.29:289
chr10	27508837	rs788213	T	C	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	27529549	rs2797078	C	A	11543.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:2,428:1.00:430
chr10	27529565	rs2489372	T	C	13656.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr10	27539507	rs7896532	C	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	27570130	rs1252880	C	T	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.08;QD=29.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	27570312	rs201436257	G	A	92.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.70;MQRankSum=1.282;QD=18.56;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr10	27577568	rs2780686	G	A	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.714;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-0.488;QD=14.23;ReadPosRankSum=1.597;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:35,75:0.68:110
chr10	27577615	rs11015640	T	G	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,82:0.66:124
chr10	27577640	rs3818746	G	T	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:35,69:0.66:104
chr10	27595356	rs7085523	C	T	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,58:0.67:87
chr10	27687225	rs2505323	A	G	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	27687775	rs1638630	T	C	9490.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	27687965	rs2505327	A	G	7908.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	27687994	rs2484173	A	G	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	27688109	rs2429485	T	C	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	27688189	rs2484174	G	A	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-0.200;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:4,28:0.88:32
chr10	27692062	rs2429491	T	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr10	27692099	rs2484179	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr10	27692279	rs2484180	A	C	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.236;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:114,40:0.26:154
chr10	27692371	rs2484181	T	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr10	27692403	rs2505307	C	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr10	27700887	rs2429499	G	A	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	27702042	.	T	TA	3611.73	.	AC=1;AF=0.500;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	0/1:70,103:0.60:173
chr10	27702256	rs112067123	G	GC	3466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.027;QD=7.07;ReadPosRankSum=1.918;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:329,161:0.33:490
chr10	27702726	rs11015753	G	A	4267.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:79,190:0.71:269
chr10	27702744	rs11015754	A	G	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:78,173:0.69:251
chr10	27703234	rs7071851	A	G	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,59:0.69:85
chr10	27822619	rs72264716	TTC	T	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	28032136	rs2252651	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	28142245	rs7898085	A	G	151.18	.	AC=2;AF=1.00;AN=2;DB;DP=11;MQ=59.32;set=Intersection	GT:AD:AF:DP	1/1:2,8:0.80:10
chr10	28142294	rs143299831	T	TATAAATAA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-0.524;QD=16.55;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr10	28151604	rs34181914	AT	A	2811.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	28196425	rs78414228	G	GA	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr10	28225897	rs2297646	G	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr10	28228865	rs7893462	A	G	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:28,69:0.71:97
chr10	28233120	rs3824590	A	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr10	28233469	rs3802517	T	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr10	28233931	rs34717952	G	A	8129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=3.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=-0.450;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:111,207:0.65:318
chr10	28233931	.	GCA	ACG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=77;NR=104;PP=2944;QD=20;SC=AAGGAACACCGCATTCCCATA;SbPval=0.38;Source=Platypus;TC=293;TCF=117;TCR=176;TR=181;WE=28233941;WS=28233921;set=Platypus	GT:AD:AF:DP	1/0:112,181:0.62:293
chr10	28233933	rs34084011	A	G	8129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=4.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.74;ReadPosRankSum=-0.793;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:105,199:0.65:304
chr10	28247860	rs61842728	G	A	2217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=0.034;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:35,97:0.73:132
chr10	28247957	rs34350686	A	C	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr10	28257852	rs199740026	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=12.82;ReadPosRankSum=1.465;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	28259936	rs139300652	TAAACAAAC	T	1861.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr10	28276273	rs3808909	G	A	3568.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:94,160:0.63:254
chr10	28345336	rs61845094	C	T	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:46,64:0.58:110
chr10	28345370	rs118187581	G	A	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:63,110:0.64:173
chr10	28346516	.	A	C	108	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5076;HP=1;HapScore=2;MGOF=7;MMLQ=24;MQ=59.13;NF=7;NR=0;PP=108;QD=20.3958875067;SC=TCTGCAGAGCAGTGAGCCAAT;SbPval=1.0;Source=Platypus;TC=14;TCF=11;TCR=3;TR=7;WE=28346524;WS=28346506;set=Platypus	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	28346584	rs12217744	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr10	28346629	rs76671899	A	AGT	1358.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr10	28347615	rs12570424	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr10	28348815	rs1361922	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	28358548	rs2763318	CA	AC	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.03;ReadPosRankSum=-0.994;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr10	28378758	rs2997211	T	C	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:43,89:0.67:132
chr10	28491313	rs11598304	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr10	28527425	rs56069980	C	CA	1706.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:137,62:0.31:199
chr10	28822373	rs12767429	A	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	28822982	rs143699084	G	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr10	28872481	rs35140807	C	CA	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.658;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.001;QD=5.53;ReadPosRankSum=-0.474;SOR=1.592;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr10	28899841	rs11371837	A	AT	1063.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=6.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-0.832;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:28,64:0.70:92
chr10	28903400	rs71391055	G	GTCTTCTTTAAAACA	1751.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr10	28905079	rs332176	A	G	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr10	29136129	rs813935	A	G	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	29136228	rs41283730	C	G	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:48,90:0.65:138
chr10	29137085	rs787323	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr10	29162295	.	GTA	G	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=1.402;QD=19.27;ReadPosRankSum=-0.384;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr10	29162324	rs35236571	TAC	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.324;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr10	29169046	rs199740171	AT	A	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.185;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr10	29577924	rs2768670	G	C	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	29578084	rs17851935	A	G	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	29578180	.	A	ATGAAGCCAACTGTCTC	1739.73	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	29578346	rs11347424	CT	C	261.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.627;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr10	29580735	rs2148901	C	T	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=0.462;QD=23.44;ReadPosRankSum=1.109;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr10	29580743	rs2148902	G	A	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=0.031;QD=23.79;ReadPosRankSum=0.569;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr10	29581309	rs1751955	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr10	29581440	rs3818550	C	T	5701.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:149,269:0.64:418
chr10	29598896	rs2796293	A	G	8583.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr10	29754675	rs56248456	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr10	29769589	rs61737920	C	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:141,88:0.38:229
chr10	29779847	rs199726033	A	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=7.723;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-7.816;QD=2.05;ReadPosRankSum=2.106;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:217,52:0.19:269
chr10	29779977	rs61848920	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr10	29783908	rs78773460	A	G	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:168,87:0.34:255
chr10	29783984	rs3031505	GAAACT	G	3206.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:135,87:0.39:222
chr10	29784003	rs7904048	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.965;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=11.136;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=-4.014;QD=1.95;ReadPosRankSum=-0.967;SOR=1.704;set=HC	GT:AD:AF:DP	0/1:161,33:0.17:194
chr10	29784004	rs28427082	G	A	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.249;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=26.097;MLEAC=1;MLEAF=0.500;MQ=53.14;MQRankSum=4.908;QD=11.87;ReadPosRankSum=2.733;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:77,114:0.60:191
chr10	29784072	rs2368406	G	C	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.33;QD=33.19;SOR=2.746;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	29784114	rs6481601	T	C	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	29812602	rs7070678	G	T	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:155,87:0.36:242
chr10	29818604	rs913035	A	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr10	29818827	rs3780843	C	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.675;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr10	29820070	rs11819202	G	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr10	29821089	rs17756919	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr10	29821523	rs1328323	T	C	6007.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	29822032	rs1247696	C	T	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	29822159	rs7076239	T	C	6133.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	29834095	rs4463752	G	A	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.223;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-0.457;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr10	29834105	rs1410472	C	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=0.403;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr10	29834114	rs1410473	C	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-0.626;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr10	29839798	rs17834991	A	G	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:359,180:0.33:539
chr10	29839864	rs1270874	A	C	2089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-1.817;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:340,133:0.28:473
chr10	29891321	rs2505901	T	C	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr10	29932841	rs2488690	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr10	29932918	rs2488689	G	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr10	30306804	rs2478839	G	A	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr10	30316072	rs3739998	C	G	5010.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:134,207:0.61:341
chr10	30316208	rs2185724	T	C	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:302,181:0.37:483
chr10	30316872	rs3739996	T	C	2085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-1.504;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:210,119:0.36:329
chr10	30317826	rs7920682	A	G	3209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.661;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:244,99:0.29:343
chr10	30317838	rs7920686	A	G	3185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=2.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=0.179;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:231,94:0.29:325
chr10	30317949	rs2478835	C	T	5098.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:86,213:0.71:299
chr10	30611614	rs2484284	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	30615618	rs34959427	T	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr10	30615638	rs1029172	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	30626003	rs12221163	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr10	30629082	rs2689215	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	30629136	rs1047988	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:89,36:0.29:125
chr10	30629226	rs1047991	G	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:188,79:0.30:267
chr10	30629434	rs36002941	CTATTT	C	622.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr10	30637995	rs10826783	C	G	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr10	30638208	.	T	TAAA	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr10	30653561	rs7094285	C	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr10	30748498	rs8177029	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr10	30749895	rs3034	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr10	30901722	rs3832672	GC	G	2629.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	30901756	rs9954	G	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	30915618	rs3852488	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr10	30915637	rs3864847	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:53,17:0.24:70
chr10	30918486	rs75095145	G	A	2581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-8.462;QD=8.81;ReadPosRankSum=4.086;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:215,78:0.27:293
chr10	30918492	rs76101300	G	T	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-8.499;QD=8.77;ReadPosRankSum=4.318;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:217,78:0.26:295
chr10	30918549	rs201069868	G	C	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-4.917;QD=3.79;ReadPosRankSum=-2.056;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:183,62:0.25:245
chr10	30918597	rs74551644	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=7.712;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-6.183;QD=0.33;ReadPosRankSum=-1.658;SOR=1.832;set=HC	GT:AD:AF:DP	0/1:132,16:0.11:148
chr10	30978164	rs28363791	A	G	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	30978274	rs4988769	T	C	2400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.174;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=51.45;MQRankSum=5.212;QD=17.92;ReadPosRankSum=-0.155;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:37,97:0.72:134
chr10	30978275	rs74782223	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.58;MQRankSum=2.298;QD=1.04;ReadPosRankSum=0.320;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:113,23:0.17:136
chr10	30978288	rs71023602	C	CAGTTT	962.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.980;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=51.47;MQRankSum=-7.555;QD=7.35;ReadPosRankSum=1.452;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr10	30982453	rs7068641	T	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.04;QD=30.70;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	30982475	rs7084628	A	G	1138.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.97;MQRankSum=-1.727;QD=26.48;ReadPosRankSum=0.365;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr10	30982526	rs7068784	T	G	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	30985070	rs11008186	G	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	30985081	rs10826846	G	A	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	30986240	rs138927815	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.03;QD=45.84;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	30986242	rs11008188	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.08;QD=45.80;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	30986244	rs11007616	A	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;QD=44.85;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	30986253	rs4747726	G	A	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=41.71;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	30986296	rs4749587	C	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	30986364	rs7078530	G	A	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	30989188	rs10740829	G	C	10695.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr10	30993404	rs11008192	G	A	7815.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	30993448	rs10826848	G	A	7654.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr10	31001494	rs1826619	A	C	13672.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr10	31134214	rs3740236	A	G	3968.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:107,182:0.63:289
chr10	31146615	rs16932010	T	C	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:90,144:0.62:234
chr10	31803516	rs220060	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	32096803	rs1412493	G	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr10	32103077	rs2799012	C	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr10	32106851	rs2778650	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr10	32115133	rs2255544	A	G	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	32143208	rs2808090	A	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr10	32306872	rs211376	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr10	32307534	rs11428920	T	TA	1971.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.54;QD=43.82;SOR=2.252;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	32307536	rs55938482	T	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.54;QD=44.02;SOR=2.252;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	32307536	.	TA	AA	1130	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=28;MQ=69.35;NF=9,0;NR=27,26;PP=811,1130;QD=23.493644793;SC=TTATTCTGTATATTGTACTTA;SbPval=0.54;Source=Platypus;TC=36;TCF=9;TCR=27;TR=36,26;WE=32307544;WS=32307526;set=Platypus	GT:AD:AF:DP	0/1:0,36:1.00:36
chr10	32307536	.	TA	TAA	1130	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=28;MQ=69.35;NF=9,0;NR=27,26;PP=811,1130;QD=23.493644793;SC=TTATTCTGTATATTGTACTTA;SbPval=0.54;Source=Platypus;TC=36;TCF=9;TCR=27;TR=36,26;WE=32307544;WS=32307526;set=Platypus	GT:AD:AF:DP	0/1:1,26:0.96:27
chr10	32309005	rs1775715	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr10	32311969	rs176924	A	G	7174.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	32321495	rs398686	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr10	32323591	rs211277	G	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:55,28:0.34:83
chr10	32328526	rs1251363	G	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr10	32344747	rs211299	G	A	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.979;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:87,42:0.33:129
chr10	32575793	rs2986931	A	G	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	32667234	.	G	GA	51	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=10;HapScore=2;MGOF=11;MMLQ=15;MQ=60.0;NF=3;NR=0;PP=51;QD=21.0;SC=CTTTAACAATGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=11;TCF=11;TCR=0;TR=3;WE=32667242;WS=32667229;set=Platypus	GT:AD:AF:DP	1/0:8,3:0.27:11
chr10	32740904	rs74740427	AG	CA	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr10	32742256	rs2490505	T	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	32745262	rs7897978	T	C	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=1.149;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:55,37:0.40:92
chr10	32745396	rs2244153	A	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	32751831	rs77999276	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr10	32751901	rs2505380	G	A	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	32763113	rs2002079	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr10	32781030	rs2990982	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr10	32806972	rs2990984	C	T	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	32807550	rs3006708	G	A	268.53	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr10	32832214	rs2990986	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	32833081	rs113244447	AT	A	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr10	32833354	rs45553939	C	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.576;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr10	32854667	rs1980248	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.308;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr10	32856937	rs12783494	T	G	149.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.02;MQRankSum=1.834;QD=14.98;ReadPosRankSum=2.287;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr10	32873056	rs2947085	A	G	115.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	32912945	rs74233145	C	T	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr10	32974969	rs1762526	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	33015782	rs928701	G	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	33015855	rs4145863	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	33018351	rs1414548	G	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	33093858	rs35054696	TAC	T	1749.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:21,63:0.75:84
chr10	33123776	rs143370393	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr10	33123824	rs4448627	G	C	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	33143396	rs1418538	G	A	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	33165226	rs2488305	G	A	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	33165422	rs12217414	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=1.121;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:33,32:0.49:65
chr10	33190567	rs2153875	C	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.22;QD=27.29;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	33197130	rs77744583	GCTTT	G	872.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr10	33200782	rs4587680	C	T	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:295,155:0.34:450
chr10	33208720	rs3780876	T	C	334.81	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr10	33209266	rs2230396	G	T	6991.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	33214802	rs2298141	A	G	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:90,175:0.66:265
chr10	33219008	rs2256455	T	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr10	33469181	rs1048804	A	G	13722.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr10	33469286	rs2229936	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:144,67:0.32:211
chr10	33471761	.	GCACA	G	917.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=4.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=0.383;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr10	33481478	rs2243920	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr10	33483561	rs2474726	T	A	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr10	33483837	rs149169549	CAT	C	1465.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr10	33484577	rs2474724	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr10	33486667	rs10827208	A	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr10	33491506	rs139666910	CTGAAAATAA	C	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	33491552	rs11009288	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr10	33495267	rs11812166	C	T	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:44,107:0.71:151
chr10	33495304	rs11815912	A	G	2227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=0.368;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:55,98:0.64:153
chr10	33495304	.	ACA	GCG	1194	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=1;MGOF=22;MMLQ=23;MQ=60.0;NF=36;NR=42;PP=1194;QD=15.9931778828;SC=GGGGTTTGGGACATGACTACA;SbPval=0.68;Source=Platypus;TC=130;TCF=64;TCR=66;TR=78;WE=33495314;WS=33495294;set=Platypus	GT:AD:AF:DP	0/1:52,78:0.60:130
chr10	33495306	rs2474715	A	G	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.57;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	33495333	rs11812181	C	A	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr10	33495398	rs118182941	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr10	33496394	rs77732726	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr10	33502143	rs77435617	A	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:192,91:0.32:283
chr10	33510614	rs4934837	G	A	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr10	33510663	rs2229935	G	A	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:74,143:0.66:217
chr10	33510768	rs2229934	G	A	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:88,174:0.66:262
chr10	33542835	rs7074620	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	33545464	rs10827221	G	C	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr10	33552407	rs2070299	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr10	33552518	rs2070298	A	C	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.081;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.54;ReadPosRankSum=1.613;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:70,39:0.36:109
chr10	33552522	rs2070297	G	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=2.646;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:78,41:0.34:119
chr10	33552696	rs7079053	A	G	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	33619562	rs1411924	C	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	34408636	rs11009651	T	C	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:157,78:0.33:235
chr10	34408745	rs3004928	A	C	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:29,69:0.70:98
chr10	34619946	rs10740885	A	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr10	34620220	rs3781128	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:41,79:0.66:120
chr10	34649146	rs61735565	G	C	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:92,214:0.70:306
chr10	34663981	.	A	AAC	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.55;ReadPosRankSum=-0.489;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	34666864	rs10740890	C	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=0.876;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:11,35:0.76:46
chr10	34688287	rs2796011	G	A	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	34985197	rs5784425	C	CA	2838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.532;QD=13.08;ReadPosRankSum=2.392;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:42,175:0.81:217
chr10	35300981	.	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=7.562;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.083;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr10	35302705	rs12830	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr10	35320355	rs17582954	T	C	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:44,96:0.69:140
chr10	35320383	rs3740083	C	T	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:57,121:0.68:178
chr10	35322024	rs12261654	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr10	35324076	rs2244174	A	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	35324314	rs35687560	G	A	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:21,73:0.78:94
chr10	35327766	rs2384284	G	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	35328088	rs11010077	A	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr10	35338699	rs7900480	G	A	4933.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:112,218:0.66:330
chr10	35343497	rs2384288	T	C	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr10	35343525	rs2384289	G	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr10	35360310	rs4934711	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr10	35362977	rs12248333	A	G	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:41,79:0.66:120
chr10	35363104	rs41276098	C	T	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:204,103:0.34:307
chr10	35426755	rs17499247	A	G	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=-0.694;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:33,64:0.66:97
chr10	35467671	rs12260130	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr10	35484949	rs1057108	T	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,75:0.66:114
chr10	35490525	rs34001864	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr10	35625845	rs59114674	C	G	826.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	35625846	.	G	GC	817.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	35772402	rs3802509	G	A	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	35894666	rs627267	A	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	35894761	rs637881	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	35896470	rs11595555	G	T	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr10	35928224	rs625858	C	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	35930412	rs142623421	C	CG	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=1.522;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr10	36812362	rs2503084	C	T	5866.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:123,250:0.67:373
chr10	36813180	rs2503083	T	A	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:43,91:0.68:134
chr10	36813198	rs2503082	A	G	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	36813218	rs2505569	C	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr10	36813298	rs10764092	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr10	37425759	rs138976500	G	GTGTATATA	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr10	37433975	rs200315308	T	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.599;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-6.579;QD=2.84;ReadPosRankSum=-3.452;SOR=1.453;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr10	37433982	rs200974283	CG	GT	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.963;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.263;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-6.429;QD=3.11;ReadPosRankSum=-3.616;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr10	37441072	rs1148257	T	G	3083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=-0.328;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:58,138:0.70:196
chr10	37482253	.	C	A	124.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr10	37488689	rs1209750	G	C	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.227;QD=10.66;ReadPosRankSum=0.245;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:60,79:0.57:139
chr10	37505141	rs1200876	G	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr10	37505192	rs1200875	C	T	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=1.175;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:22,57:0.72:79
chr10	37508450	rs1148259	A	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:117,49:0.30:166
chr10	38120285	rs1208730	C	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr10	38120642	rs1208731	C	T	4036.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:80,169:0.68:249
chr10	38120720	rs1779132	C	T	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:113,219:0.66:332
chr10	38120945	rs1211708	A	G	9265.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:222,417:0.65:639
chr10	38126705	rs1779089	C	G	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.09;ReadPosRankSum=1.146;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:66,65:0.50:131
chr10	38126708	rs1735601	G	A	2503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.56;ReadPosRankSum=0.790;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:63,65:0.51:128
chr10	38127088	rs1148283	C	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:48,93:0.66:141
chr10	38145142	rs1148294	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr10	38241067	rs1208606	A	C	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:56,88:0.61:144
chr10	38246545	rs2799499	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	38260558	rs371664170	AACACACAC	A,AACACACACAC	641.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.080;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.617;QD=11.88;ReadPosRankSum=-0.846;SOR=1.347;set=HC	GT:AD:AF:DP	1/2:15,17,22:0.31,0.41:54
chr10	38299843	rs201239978	GC	G,TC	1497.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=46;set=Intersection	GT:AF:DP	1/2:0.64,0.36:45
chr10	38306128	rs2738208	A	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.928;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.083;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-1.645;QD=3.15;ReadPosRankSum=0.049;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr10	38328326	.	G	GTTTTT	366.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr10	38344700	rs2505232	C	G	13847.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr10	38345465	rs10508862	G	C	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:90,141:0.61:231
chr10	38353284	rs4934929	A	G	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr10	38385316	rs2474572	A	G	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	38385441	rs2474573	G	A	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	38407519	rs176889	A	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	38537070	rs1780145	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	38598955	rs12358852	T	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr10	38599101	rs34686283	C	CT	2355.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	38638887	rs2997765	C	CA	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.600;QD=7.91;ReadPosRankSum=-1.652;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr10	38645403	rs72639552	T	C	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	38647171	rs2800473	C	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	38647463	rs35215821	A	AT	915.73	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:122,69:0.36:191
chr10	38650104	rs2804643	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	38654940	rs2804645	T	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr10	38667003	rs2804622	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	38672144	rs3087759	A	C	4778.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:109,216:0.66:325
chr10	38740353	rs2754385	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	38740382	rs2754386	T	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	42379863	rs11523877	C	T	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	42379864	rs11523878	G	C	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	42379941	rs375679095	TTCCGC	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=7.647;MLEAC=1;MLEAF=0.500;MQ=36.89;MQRankSum=-1.932;QD=2.59;ReadPosRankSum=0.179;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr10	42379948	.	C	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=40.49;MQRankSum=-2.515;QD=17.86;ReadPosRankSum=-2.100;SOR=2.245;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	42905431	rs3004228	A	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	42905510	rs2419684	A	C	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	42922595	rs2489725	A	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	42926170	rs66977053	TGG	T	1894.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	42928668	rs67090148	GGAGTCTATC	G	5227.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	42949768	rs73251888	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-16.091;QD=0.41;ReadPosRankSum=-0.355;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:252,22:0.08:274
chr10	42949773	.	G	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-15.852;QD=0.61;ReadPosRankSum=-0.284;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:244,22:0.08:266
chr10	42949782	.	G	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=4.023;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-15.647;QD=1.18;ReadPosRankSum=-0.643;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:233,25:0.10:258
chr10	42949787	.	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=4.222;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-15.313;QD=1.02;ReadPosRankSum=0.522;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:225,23:0.09:248
chr10	42949789	.	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=4.181;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-15.250;QD=0.99;ReadPosRankSum=0.673;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:223,23:0.09:246
chr10	42949797	.	C	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-15.127;QD=0.88;ReadPosRankSum=2.471;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:222,21:0.09:243
chr10	42949811	.	C	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=8.400;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-13.654;QD=0.88;ReadPosRankSum=3.067;SOR=1.767;set=HC	GT:AD:AF:DP	0/1:204,20:0.09:224
chr10	42949828	rs200497651	T	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=6.220;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-13.454;QD=1.59;ReadPosRankSum=2.378;SOR=1.386;set=HC	GT:AD:AF:DP	0/1:172,21:0.11:193
chr10	42949838	.	TG	CA	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.214;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=8.462;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-12.367;QD=2.12;ReadPosRankSum=1.890;SOR=1.653;set=HC	GT:AD:AF:DP	0/1:144,20:0.12:164
chr10	42949858	.	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-11.015;QD=3.62;ReadPosRankSum=0.211;SOR=1.498;set=HC	GT:AD:AF:DP	0/1:111,20:0.15:131
chr10	42949867	.	T	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=3.767;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-10.285;QD=4.09;ReadPosRankSum=-1.273;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:96,19:0.17:115
chr10	42949880	.	G	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=4.848;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-9.764;QD=2.67;ReadPosRankSum=0.373;SOR=1.553;set=HC	GT:AD:AF:DP	0/1:85,12:0.12:97
chr10	42949888	.	C	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=10.084;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-9.142;QD=1.31;ReadPosRankSum=1.739;SOR=3.020;set=HC	GT:AD:AF:DP	0/1:77,8:0.09:85
chr10	42949893	.	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.241;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=10.137;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-8.634;QD=1.23;ReadPosRankSum=1.075;SOR=3.138;set=HC	GT:AD:AF:DP	0/1:68,8:0.11:76
chr10	42949895	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=10.190;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-8.517;QD=1.39;ReadPosRankSum=0.827;SOR=3.098;set=HC	GT:AD:AF:DP	0/1:66,8:0.11:74
chr10	42949897	.	T	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=10.211;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-8.458;QD=1.49;ReadPosRankSum=0.672;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:65,8:0.11:73
chr10	42949906	.	C	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=7.457;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-7.713;QD=2.32;ReadPosRankSum=-0.718;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:53,8:0.13:61
chr10	42949907	.	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=7.472;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-7.648;QD=2.46;ReadPosRankSum=-0.852;SOR=2.564;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chr10	42949923	.	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.826;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-6.967;QD=2.74;ReadPosRankSum=-1.820;SOR=2.041;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chr10	42949933	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-6.025;QD=0.91;ReadPosRankSum=-0.511;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:35,3:0.08:38
chr10	42965636	rs1255411	C	T	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	43089965	rs210280	G	A	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	43119123	rs158377	G	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	43119159	rs158378	T	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	43128395	rs209391	C	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	43132232	rs209387	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	43232450	rs702370	G	A	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	43280057	rs55869085	CTT	C	9094.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	43572950	rs12246855	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	43572951	rs12246856	A	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.99;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	43595781	rs2565206	G	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	43595836	rs57003029	AT	A	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.056;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:70,24:0.26:94
chr10	43595968	rs1800858	A	G	5903.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	43604390	rs1864404	A	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	43606687	rs1800860	A	G	11768.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr10	43614885	rs111264957	C	T	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	43615094	rs1800862	C	T	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	43619360	rs201104591	TG	T	1598.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	43622217	rs2075912	T	C	10137.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr10	43650915	rs41298781	C	T	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	43654194	rs35718664	A	G	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	43657811	rs2257767	T	G	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	43671378	rs61579799	GT	G	1422.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	43671383	rs370983026	T	C	815.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.907;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.05;ReadPosRankSum=-0.101;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr10	43694363	rs35825252	C	CA	5260.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	43695049	rs1254964	T	C	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	43695112	rs41301581	A	G	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr10	43696279	rs41301585	A	G	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	43698980	rs1254961	C	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	43932479	rs2244396	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	43978087	rs3750890	A	G	6753.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	43991255	rs9422519	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	44103923	rs3128239	G	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	44104513	rs7342073	C	A	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	44285777	rs3750724	T	C	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	44285921	rs3750725	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	44868856	rs266091	A	C	9064.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr10	44870015	rs266088	C	T	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	44870240	rs197452	C	T	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.525;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	44874253	rs266085	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	44876455	rs17880358	T	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	44880260	rs72790862	T	C	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	44880281	rs78453259	C	T	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	45423282	rs10900131	C	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	45430462	rs17417442	C	T	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr10	45466726	rs4948938	G	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	45473317	rs3740094	C	T	10182.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr10	45496120	rs12269028	A	T	6843.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	46135871	.	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=4.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=2.399;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr10	46952667	rs3120429	A	G	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.53;QD=26.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	46960084	rs9422009	G	A	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:81,90:0.53:171
chr10	46963738	rs3127783	A	G	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	46965018	rs3127785	C	G	12014.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr10	46965640	rs3737223	G	A	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:76,55:0.42:131
chr10	46965727	rs1889849	G	A	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:183,197:0.52:380
chr10	46967672	rs2152530	C	T	18200.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr10	46968665	rs200814731	G	A	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:103,119:0.54:222
chr10	46968762	rs3127790	C	G	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr10	46968879	rs10588658	AAC	A	1287.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	46968882	.	ACACACACACACACACG	A	329	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=4;MGOF=37;MMLQ=24;MQ=59.73;NF=4;NR=15;PP=329;QD=17.7368421053;SC=ACCAGGCAACACACACACACA;SbPval=0.5;Source=Platypus;TC=26;TCF=5;TCR=21;TR=19;WE=46968905;WS=46968869;set=Platypus	GT:AD:AF:DP	1/0:7,19:0.73:26
chr10	46969496	rs3127792	A	G	12171.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:1,446:1.00:447
chr10	46970654	rs915449	C	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=1.318;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr10	46970792	rs915450	G	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.107;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr10	46970815	rs915451	C	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr10	46998719	rs201733825	GTCAC	G	2205.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr10	46998795	rs3127677	A	G	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:159,163:0.51:322
chr10	46998894	rs3127817	G	A	6056.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:324,297:0.48:621
chr10	46998999	rs3127818	G	A	7316.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:300,336:0.53:636
chr10	46999019	rs3127819	G	A	7626.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:304,361:0.54:665
chr10	46999151	rs3127820	T	C	4800.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:194,224:0.54:418
chr10	46999189	rs3127678	CA	TG	7722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=2.263;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.00;ReadPosRankSum=0.362;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:164,187:0.53:351
chr10	46999198	rs3127680	G	T	7504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.67;ReadPosRankSum=-0.041;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:167,196:0.54:363
chr10	46999465	rs3127682	A	G	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:176,179:0.50:355
chr10	46999591	rs112620425	C	CATGAGGGAG	7998.73	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:213,209:0.50:422
chr10	46999604	rs3127683	A	G	4703.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:230,219:0.49:449
chr10	46999747	rs3127821	T	C	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:277,217:0.44:494
chr10	47000004	rs3127822	T	C	8561.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	47000079	rs3127823	T	C	3466.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:220,178:0.45:398
chr10	47000146	rs3127684	C	T	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:161,127:0.44:288
chr10	47000188	rs3127824	A	G	4862.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	47000217	rs72780221	G	A	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr10	47000239	rs7912299	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr10	47087474	rs1129838	C	T	19379.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr10	47087608	rs1936339	T	C	21630.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:0,789:1.00:789
chr10	47087680	rs1048157	C	T	23194.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:0,828:1.00:828
chr10	47087731	rs1048158	C	T	23894.77	.	AC=2;AF=1.00;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	1/1:0,879:1.00:879
chr10	47087830	rs1129839	G	A	18830.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,672:1.00:672
chr10	47416860	rs28377449	G	C	5932.77	.	AC=1;AF=0.500;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	0/1:552,329:0.37:881
chr10	47667164	rs4076960	C	T	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	47667380	rs4076959	C	T	21152.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,784:1.00:784
chr10	47668707	rs4409768	T	C	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	47668721	rs4570521	G	A	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	47669277	rs61845226	C	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	47669320	rs113650392	G	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.15;QD=42.03;SOR=3.334;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	47669324	rs113530203	A	T	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.53;QD=43.55;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	47673858	rs7092598	T	C	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	47680513	rs10572939	GCC	G	3312.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	47681520	rs73291027	G	A	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	47681550	rs73291028	G	C	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	47681757	rs75611076	G	A	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	47756004	rs3013885	T	C	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	47756065	rs77623921	C	T	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	48370595	rs11204210	G	A	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr10	48388783	rs17095789	A	G	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr10	48438734	rs1126827	C	T	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	49450443	rs280612	A	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	49609578	rs3730154	C	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	49613137	rs118074767	T	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	49633873	.	T	TAC,TACAAGAATACATTCTTGTAA	1492.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=33;set=Intersection	GT:AF:DP	1/1:1.00:33
chr10	49633875	.	T	A	1681.77	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.46;SOR=7.112;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	49633876	.	GACT	G	376	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=1;HapScore=2;MGOF=5;MMLQ=28;MQ=60.0;NF=10;NR=0;PP=376;QD=40.2;SC=ATATGAATATGACTAATGTAT;SbPval=1.0;Source=Platypus;TC=13;TCF=13;TCR=0;TR=10;WE=49633886;WS=49633863;set=Platypus	GT:AD:AF:DP	1/1:3,10:0.77:13
chr10	49633877	.	A	AATACATT	1942.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.12;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	49633879	.	T	TTGTAAATG	2070.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.06;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	49654342	rs1051508	C	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	49654403	rs1051507	C	T	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	49658248	rs1867585	G	A	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	49659559	rs10776601	C	T	9889.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr10	49659637	rs3827681	T	C	7547.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	49661247	rs12768229	G	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	49661341	rs7092959	A	G	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	49662884	rs11101327	A	G	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	49667713	rs1867575	G	A	13889.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr10	49667795	rs3853761	T	C	11505.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr10	49687556	rs4240511	A	C	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	49687594	rs4838601	G	A	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	49687800	rs4080665	G	A	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	49687850	rs3888298	G	A	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	49687964	rs4240513	A	C	15502.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr10	49687971	rs4240514	T	C	15531.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr10	49688014	rs4838602	C	A	8063.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr10	49690351	rs1445157	T	C	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	49790972	rs2289808	C	T	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	49804554	rs10776627	A	G	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	49804785	rs10745280	T	G	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	49812917	rs17010948	T	C	6121.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	49860130	rs2377612	G	C	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	49860153	rs2377613	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	49860258	rs2377614	A	G	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	49929491	rs10857625	A	C	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	49939077	rs2377628	T	A	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	49939139	rs1993986	T	A	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	49944249	rs4838645	C	T	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	49944268	rs41282001	T	G	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	49983890	rs1871604	G	T	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	50031212	rs113439641	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.15;ReadPosRankSum=-1.086;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:202,41:0.17:243
chr10	50108145	rs2671693	G	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	50109902	rs2663046	G	A	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	50149674	rs2671717	A	G	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	50154768	rs2663066	A	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	50155036	rs113307003	T	TAC	714.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr10	50165128	rs3829206	G	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	50167621	rs10776660	A	G	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	50167952	rs4317902	C	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	50184949	rs2271565	C	T	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	50186415	rs2292584	C	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	50190923	rs61366126	G	GA	808.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.600;QD=14.44;ReadPosRankSum=1.635;SOR=0.633;set=HC	GT:AD:AF:DP	1/1:9,47:0.84:56
chr10	50227785	rs1913525	T	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	50227927	rs1913523	C	A	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	50315893	rs13088	A	G	11383.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr10	50342008	rs61848432	T	A	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	50531604	rs7093235	T	C	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	50532683	rs7921186	T	C	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	50533617	rs2377940	T	C	12226.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr10	50534862	rs12411843	T	C	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	50534969	.	A	AACACACAC	1329.73	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;QD=42.89;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	50535186	rs71500272	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.60;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	50681033	rs2229760	G	A	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr10	50691009	rs4240506	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	50691360	rs4253162	T	C	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	50701156	rs4253132	G	A	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	50723684	rs4253073	G	A	11146.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr10	50724016	rs4253072	C	T	7149.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	50740876	rs2228524	G	C	14119.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr10	50818762	rs1880675	C	T	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	50820345	rs8187730	C	A	14312.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr10	50822192	rs7903315	G	C	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.73;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	50822226	rs7923716	T	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	50828506	rs1880677	G	A	7783.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr10	50833839	rs868750	G	A	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	50856652	rs4838544	G	A	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	50856772	rs10580502	TAC	T	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.54;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	50857835	rs1917813	T	C	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	50863083	rs12264845	A	C	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chr10	50863147	rs8178992	T	C	10223.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr10	50863565	rs7076926	C	T	3702.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	50887651	rs1153781	G	C	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	50901809	rs1153797	T	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.22;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	50916484	rs1258236	A	G	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	50943186	rs1258256	C	T	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.566;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	50944009	rs1258257	T	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	50944613	rs1258258	C	T	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	50947918	rs1258259	A	G	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	50952851	rs1268723	C	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	50959958	rs373960674	G	A	8170.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	50960209	rs1258184	G	A	11138.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr10	51124153	rs2664655	T	G	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	51549545	rs4935176	G	T	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	51568378	rs10761581	T	G	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	51583018	rs34542065	CATT	C	2372.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	51592744	rs10995796	T	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	51620317	rs200147310	A	G	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.11;QD=19.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	51620499	rs78584401	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.31;QD=27.99;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	51623004	rs201547968	T	C	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.500;MQ=46.79;MQRankSum=-2.640;QD=12.57;ReadPosRankSum=0.931;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:36,46:0.56:82
chr10	51623014	rs201512669	G	GA	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=46.85;MQRankSum=1.932;QD=5.39;ReadPosRankSum=-0.486;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:59,42:0.42:101
chr10	51623024	rs146205287	A	C	1515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=47.16;MQRankSum=-4.194;QD=11.06;ReadPosRankSum=3.033;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:60,77:0.56:137
chr10	51623052	rs143647852	C	CT	3991.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=47.35;MQRankSum=-5.914;QD=21.12;ReadPosRankSum=1.030;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:87,102:0.54:189
chr10	51623061	rs115719811	G	A	4044.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:96,106:0.52:202
chr10	51623147	rs373071373	C	T	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=46.90;MQRankSum=-5.641;QD=9.25;ReadPosRankSum=-0.259;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:56,49:0.47:105
chr10	51623174	rs141118546	C	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.41;MQRankSum=-3.234;QD=9.15;ReadPosRankSum=-0.630;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr10	51623190	rs137912947	T	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.13;MQRankSum=-2.879;QD=7.87;ReadPosRankSum=-1.077;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr10	51623866	rs374725846	A	G	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.37;QD=24.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	51631812	rs200391397	A	G	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.25;QD=27.12;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	51632906	rs146420399	G	A	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.500;MQ=46.44;MQRankSum=-8.790;QD=9.68;ReadPosRankSum=-0.653;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:59,49:0.45:108
chr10	51632971	rs200644678	A	G	2789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-11.777;QD=7.93;ReadPosRankSum=0.088;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:198,154:0.44:352
chr10	51633027	rs115081809	T	C	3800.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:242,210:0.46:452
chr10	51827763	rs4935425	A	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	52566432	.	C	CT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=8.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.913;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr10	52576068	rs4245008	G	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	52610352	.	TTG	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=2.321;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:132,15:0.10:147
chr10	52751070	rs79957958	A	AGCC	3168.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:10,78:0.89:88
chr10	53059201	rs10762013	G	A	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	53059209	rs10762014	A	G	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	53059406	rs2043556	T	C	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	53458047	rs3740228	A	G	11553.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr10	53458998	rs2292828	A	G	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	53667443	rs10823860	C	T	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	53667476	rs7081919	G	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	53814268	.	A	C	862.77	.	AC=1;AF=0.500;AN=2;DP=214;set=Intersection	GT:AD:AF:DP	0/1:157,56:0.26:213
chr10	53841337	rs1904024	A	G	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	53841639	rs5784902	AG	A	307.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	53893539	rs17642863	A	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	53921754	rs10824173	C	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	54040478	rs144482504	GA	G	655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=11.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.926;SOR=0.161;set=HC	GT:AD:AF:DP	0/1:64,47:0.42:111
chr10	54050079	rs10762675	G	A	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	54074757	rs2241529	A	G	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	54076271	rs1569198	A	G	7176.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr10	54528266	rs930507	G	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	54528298	rs930508	G	C	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	54528353	rs930509	C	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	54530694	rs1982267	G	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	55626367	rs10825135	A	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	55663198	rs10740559	A	C	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	55663202	rs2593124	T	C	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	55719652	rs2593107	C	T	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	55779915	rs3812658	G	A	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	55826470	rs3812657	A	G	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	55838950	rs1911433	A	G	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	55943184	rs7093302	T	C	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	55973889	rs10763086	G	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	55996761	rs721825	C	T	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	56335031	rs7070334	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;MQ=54.78;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	56335067	rs7070440	A	G	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;MQ=57.37;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	56335099	rs10825362	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=25.92;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	56335273	rs7086121	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	56345303	rs4570492	T	C	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	56345335	rs2026413	T	C	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	56345378	rs11396767	T	TG	3217.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:3,153:0.98:156
chr10	56345425	rs2026412	G	A	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	56345491	rs2026411	C	G	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	56345511	rs2026410	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	56423968	rs11004439	A	C	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	58118630	rs2241666	T	C	13269.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr10	58119976	rs3861049	G	A	7482.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,269:1.00:270
chr10	59064371	rs1275284	C	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	59956556	rs2790149	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	59958956	rs1769044	C	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	59975743	rs2790146	A	T	1319.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.08;SOR=5.084;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	59987071	rs11398218	G	GT	362.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	59997644	rs2790217	A	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	60027122	rs1339580	C	T	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	60029163	rs1416763	C	T	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	60036815	rs2254775	A	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	60095143	rs1905456	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	60548276	rs11812567	G	A	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	60558125	rs2393503	A	T	4909.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	60559047	rs2893789	G	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	60563062	rs4245600	G	C	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	60566137	rs3740451	G	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	60573753	rs9416746	G	T	10282.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr10	60577393	rs4344442	T	C	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr10	60588553	rs4948550	T	C	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	60996453	rs10763600	G	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	61005244	rs2452505	G	C	8752.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr10	61007534	rs1459996	A	G	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	61007592	rs2446724	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	61014056	rs1903252	C	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	61043244	rs61738820	G	A	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	61111975	rs284606	G	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.91;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	61122268	rs3078330	T	TTA	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	61413353	rs12356193	A	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	61414176	rs56370926	G	A	8675.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr10	61444091	rs34715719	C	T	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	61552692	rs1053266	G	T	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	61552774	rs1053265	C	T	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	61574357	.	AAC	A	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.261;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:143,38:0.21:181
chr10	61612199	rs2271561	T	C	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	61665886	rs1171830	C	A	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	61802342	rs2393603	C	A	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,215:1.00:216
chr10	61802353	rs2393604	A	T	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	61802374	rs2393605	AA	TT	15697.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr10	61802550	rs9888033	A	T	7195.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	61802561	rs2393607	G	T	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	61802577	rs5785427	T	TC	5675.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	61819024	rs34010158	TA	T	3732.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	61831271	rs10821668	T	C	10743.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr10	61831744	rs10740006	A	G	10420.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr10	61840460	rs2241540	G	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	61868716	rs3750800	C	A	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	61900356	rs6479694	A	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	61941250	rs10994246	G	A	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	61956386	.	G	GA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=12.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-1.101;SOR=0.329;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr10	62039654	rs1380451	G	C	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	62375033	rs1837947	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	63422754	rs151189963	G	GGGGCCGACCCCGGCA	6666.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;MQ=60.27;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	63422876	rs71490861	A	G	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	63422998	rs71507180	C	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.49;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	63440807	rs140407515	G	GCATTATAGAATTTT	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	63520698	rs1992625	T	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	63760087	.	CT	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.642;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr10	63818920	rs3832683	GA	G	307.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	63944176	rs3125730	A	C	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	63958112	rs3125734	T	C	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	63974950	rs4559572	C	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	63977011	rs148142088	GAAAAA	G	9363.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=4.051;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.241;QD=38.22;ReadPosRankSum=1.184;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:2,243:0.99:245
chr10	63977069	rs1432414	A	T	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	63978077	rs11355398	GA	G	1046.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;MQRankSum=0.520;QD=18.05;ReadPosRankSum=-2.058;SOR=0.667;set=HC	GT:AD:AF:DP	1/1:4,54:0.93:58
chr10	63982984	rs10740069	A	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	63995983	rs3852448	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	64000878	rs1368158	T	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	64001114	rs1368157	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	64005582	rs34205992	T	TA	304.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	64005711	rs3815999	C	T	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	64019037	rs10675790	A	ATAAAT	1483.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	64136751	rs1873686	G	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	64148125	rs3852424	C	A	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr10	64148369	rs2893897	A	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	64159333	rs3758490	G	T	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	64565011	rs61744064	G	A	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	64573771	rs224083	C	T	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	64578483	rs61865884	C	T	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	64893433	rs2175197	T	C	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	64937314	rs35854283	G	A	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	64944317	rs10740107	T	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	64945364	rs3211105	G	A	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	64953311	rs4747098	G	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	64953959	rs2306264	C	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	64960536	rs10465990	G	A	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	64967445	rs1904294	A	T	14249.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr10	64974537	rs10761725	A	T	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	65139945	rs7477425	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	65225244	rs1061259	GA	CG	8527.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	65225450	rs1054693	C	T	14318.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr10	65281137	rs377532429	T	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.07;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	65322464	rs36027145	A	ATCAG	7791.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	65379304	rs35995927	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	65383515	.	ATG	A	298.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.596;QD=16.60;ReadPosRankSum=-0.948;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr10	65928826	rs10740151	T	C	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	67726514	rs2105702	A	C	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	68040325	rs4548513	C	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	68535082	rs5785786	C	CT	4683.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr10	68685929	rs7902006	G	C	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	69366602	rs3750863	T	C	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	69583206	rs962608	G	A	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	69647332	rs932657	G	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	69699478	.	GAT	G	83	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=0;NR=6;PP=83;QD=15.0;SC=TTTACTTATGGATATATATAT;SbPval=1.0;Source=Platypus;TC=22;TCF=2;TCR=20;TR=6;WE=69699487;WS=69699468;set=Platypus	GT:AD:AF:DP	1/0:16,6:0.27:22
chr10	69719074	rs7907843	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	69750213	rs11422655	G	GA	492.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.594;MLEAC=2;MLEAF=1.000;MQ=60.50;MQRankSum=0.600;QD=14.93;ReadPosRankSum=-0.193;SOR=0.214;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr10	69750788	rs5785841	GA	G	4378.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=4.087;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.807;QD=18.71;ReadPosRankSum=1.400;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:13,221:0.94:234
chr10	69755112	rs2308195	C	CCTAT	316.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	69773841	rs866255	G	A	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	69792721	rs3758393	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	69866657	rs11592680	T	C	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	69902549	rs3814180	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	69921335	rs10823142	T	A	252.79	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr10	69925123	rs10823146	C	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	69925176	rs10823147	T	C	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	69926097	rs2673794	T	C	12163.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr10	69926334	rs10823148	C	G	9296.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr10	69933921	rs10997975	G	A	12737.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr10	69933969	rs7916821	G	A	13353.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr10	69934258	rs3814182	C	G	23181.77	.	AC=2;AF=1.00;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	1/1:0,851:1.00:851
chr10	69934467	rs3814183	A	G	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr10	69934535	rs7917519	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	69935059	rs7097776	A	G	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	69935235	rs6480306	T	C	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	69948844	rs10733838	T	C	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	69954290	rs7081213	G	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	69955140	rs7069569	T	A	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	69956999	rs34524918	C	CA	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=1.200;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr10	69957340	rs7095603	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	69957350	rs7095607	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	69957375	rs7095492	C	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	69959097	rs7079549	G	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	69959242	rs7079481	C	A	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	69959345	rs11279655	GCTGGGA	G	6133.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	69959397	rs7079974	G	A	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	69961470	rs7913133	A	G	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	69961501	rs7913146	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	69966392	rs3814185	T	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	70045157	rs35708572	G	A	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	70045201	rs7909365	C	A	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	70045264	rs3816299	A	C	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	70051810	rs3835100	A	G	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	70051928	rs10823171	A	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	70056600	rs2394470	C	T	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	70105560	rs1162753	G	A	9848.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr10	70143774	rs7899885	C	T	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	70166913	rs59831114	T	G	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	70204795	.	C	T	1607.77	.	AC=2;AF=1.00;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	70252822	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=2.012;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr10	70266546	rs2275716	G	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	70276728	rs2664412	G	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	70332066	rs3814177	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	70332580	rs10823229	A	G	9903.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr10	70392319	rs10733844	G	A	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	70392375	rs1747	G	A	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.61;QD=27.98;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	70405855	rs3998860	A	G	11873.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr10	70442868	rs11284778	GA	G	640.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	70481547	rs1616158	C	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	70497482	rs1162961	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	70497799	rs1149679	C	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	70502288	rs1300253	G	A	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	70502426	rs1300252	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	70520636	rs58477996	CAAA	C	1015.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;QD=31.74;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:4,28:0.88:32
chr10	70525591	rs1149688	G	A	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	70531217	rs10823258	C	T	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	70534744	rs1782323	A	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	70641860	rs1341667	T	C	6890.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	70673430	rs5030891	G	A	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	70696009	rs7084726	T	C	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	70696713	rs5030895	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	70696908	rs1539166	G	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	70700944	rs5030900	A	G	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	70716106	rs5030896	A	G	5389.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr10	70722939	rs5030897	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	70734599	rs5030902	A	T	2638.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.100;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.78;ReadPosRankSum=2.322;SOR=1.994;set=HC	GT:AD:AF:DP	1/1:2,93:0.98:95
chr10	70742192	rs2251911	T	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	70748784	rs2255607	G	A	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr10	70765431	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=2.225;QD=1.66;ReadPosRankSum=-0.857;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr10	70856852	rs2229498	G	A	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	70884013	rs5030909	G	A	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	70892791	rs5030932	C	T	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	70922159	rs61871361	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	70931199	rs34811737	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	70945840	rs5030910	C	T	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	70946097	.	A	AG	831.73	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.83;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr10	70951346	rs11817569	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	70955056	rs5018859	A	G	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr10	70958327	rs5030911	C	T	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	70968804	rs35757450	G	GT	355.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=-0.142;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr10	70992413	rs874557	G	A	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	70992664	rs874556	C	T	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	70992912	rs5030970	A	T	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	70992949	rs5030971	T	A	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	70992970	rs5030972	G	A	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	70998738	rs4145930	G	A	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	71010026	rs4745978	T	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	71018660	rs1111335	T	C	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	71027231	rs2611	G	C	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	71060610	rs906220	A	G	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	71060634	rs906221	G	A	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	71060696	rs906222	G	A	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	71060707	rs906223	T	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	71098436	rs58179691	AGTGT	A	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=36.43;ReadPosRankSum=-1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	71142420	rs748235	G	A	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	71144702	rs749105	G	A	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	71152091	rs2278745	T	C	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	71158268	rs1227938	C	T	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	71167119	rs10998762	G	A	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	71168620	.	GCCAGCCCCCCGCCCCCTCCAGGCCCCGCCCCCT	G	874.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.64;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	71168685	rs55953810	A	T	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	71168945	rs1549797	C	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	71243323	rs10823396	C	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	71244832	rs2305201	C	A	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	71263991	rs5785921	G	GT	1117.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	71264325	rs1652804	G	A	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	71267412	rs1665583	T	G	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=0.903;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:23,61:0.73:84
chr10	71267417	rs3750790	T	G	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=0.633;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:23,61:0.73:84
chr10	71332204	rs4536103	A	G	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	71390283	.	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.432;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr10	71390392	rs1947741	C	T	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	71391707	rs2262274	C	T	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	71391719	rs144716370	C	CTGGGTAAGACT	3007.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	71392495	rs2616089	T	A	5447.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	71392501	rs2616088	G	C	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	71392557	rs12020	C	T	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	71392692	rs1052152	T	C	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	71562437	rs10998973	G	A	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	71637905	rs10823446	C	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	71640274	rs144774788	G	A	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	71647298	rs10999011	G	A	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	71649046	rs10999015	G	A	1237.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=0.776;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr10	71649309	rs2683572	A	G	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	71654602	rs10999018	G	A	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	71655443	rs1227744	G	A	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	71657272	rs1227746	A	G	15648.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr10	71658512	rs1227747	G	A	15892.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr10	71664661	.	C	CT	720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=2.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.123;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:40,43:0.52:83
chr10	71665676	rs2683575	G	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	71678058	rs2274181	C	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	71681530	rs2274180	C	A	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	71681766	rs4237324	A	G	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	71685532	rs1227778	G	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	71686677	rs2274178	G	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.43;SOR=3.312;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	71686905	rs3215785	CG	C	3885.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	71689645	rs2763339	T	G	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	71689966	rs59283631	TG	T	1206.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.71;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	71689968	rs115514231	G	A	1215.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	71692556	rs7094009	C	G	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	71851429	rs72075869	CA	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.212;SOR=0.221;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr10	71868763	rs2271698	G	A	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	71876382	rs2394656	C	T	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	71880757	rs4746962	A	C	7289.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr10	71880791	rs73273531	C	G	10218.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr10	71905695	rs10999158	A	G	13071.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr10	71974468	rs7911572	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	71993094	rs7077538	T	G	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	72015409	rs10999212	C	A	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	72026279	rs3812697	G	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	72037687	rs35789490	T	TG	3883.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	72043389	rs1889394	T	G	11177.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr10	72043460	rs10999239	T	G	5562.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr10	72061079	rs10740336	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	72061420	rs4746997	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	72181460	rs3793809	G	T	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	72195439	rs1904589	T	C	7214.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	72201532	rs74139636	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	72289778	rs2275060	C	T	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	72298631	rs1122918	T	C	9948.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr10	72300743	rs12776085	C	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	72306967	rs3824764	C	T	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	72306978	rs3824763	C	A	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	72324143	rs7093516	A	G	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	72360038	rs10999426	G	A	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	72360059	rs10999427	C	T	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chr10	72432498	rs12762780	C	A	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	72432521	rs12762616	A	C	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	72468535	.	G	A	3524.77	.	AC=2;AF=1.00;AN=2;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	72492155	rs41277996	G	C	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	72492212	rs2587478	T	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	72492244	rs10740357	A	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	72493876	rs10740358	T	C	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	72494778	rs12765664	G	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	72496375	rs1861517	A	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	72500763	rs10823607	T	C	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr10	72500863	rs10999500	C	G	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	72504920	rs10999505	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	72505208	rs7907248	A	G	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	72505243	rs7923892	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	72509809	rs2541229	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	72513682	rs2587475	C	T	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	72520254	rs61736607	C	T	18669.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr10	72532037	rs2253793	C	T	7770.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	72532238	rs2253801	T	C	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	72533910	rs7077672	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	72535007	rs2254174	C	T	9227.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr10	72536288	rs7897034	T	C	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	72536779	rs2254422	A	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	72537450	rs2254445	T	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	72619205	rs827255	C	T	8866.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr10	72635143	rs3998628	ATT	A	3067.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	72636450	rs923177	T	G	8409.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.96;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr10	72643671	rs9712	C	T	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	72648086	rs827239	A	G	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	72648134	rs827238	A	G	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	72648336	rs827237	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	72813306	rs10762420	G	A	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	72813361	rs10740361	A	G	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	73039860	rs4415677	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	73044382	rs10823716	T	A	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	73044413	rs10762434	G	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	73044580	rs12770025	G	A	16000.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr10	73044674	rs10999762	G	A	17451.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:2,641:1.00:643
chr10	73044924	rs7350453	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	73044930	rs7350455	C	T	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=1.694;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	73044954	rs6480503	A	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	73047593	rs7074280	G	A	8826.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	73050983	rs3740462	C	T	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	73104056	rs2243540	A	G	12992.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:3,486:0.99:489
chr10	73104178	rs883764	G	A	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	73115941	rs2252997	TG	CA	10469.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	73121913	rs2487068	A	G	22608.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	1/1:0,851:1.00:851
chr10	73121945	rs1084004	T	C	24350.77	.	AC=2;AF=1.00;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	1/1:0,867:1.00:867
chr10	73269714	rs2297953	T	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	73270906	rs3802720	T	C	10415.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:2,397:0.99:399
chr10	73270982	rs3802719	G	A	8658.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	73270995	rs3802718	A	G	7752.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	73377330	rs6480536	T	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	73406504	rs2305209	T	C	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	73439066	rs3802717	A	T	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	73439101	rs1227042	T	C	10115.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr10	73455201	rs3752752	T	C	17000.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr10	73455273	rs3752751	T	C	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr10	73455308	rs3752750	T	C	6682.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr10	73492079	rs1227065	A	G	14991.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr10	73492300	rs41281320	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	73494159	rs1227062	T	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	73494229	rs1227061	T	C	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	73499561	rs10762474	C	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	73501374	rs1227052	C	T	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	73501556	rs1227051	G	A	14845.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr10	73515103	rs3747858	G	T	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	73520391	rs10999987	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	73520632	rs3747869	A	C	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	73521371	rs3747867	C	T	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	73537388	rs7917781	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	73537614	rs17712523	G	A	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	73538896	rs6480555	T	A	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	73544927	.	C	T	3046.77	.	AC=2;AF=1.00;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	73545236	rs3802709	G	T	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	73550117	rs11592462	C	G	11225.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	73571581	rs140848302	C	CCT	4602.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	73578704	rs142614739	AAGTCTC	A	3019.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	73583520	rs2249814	G	C	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	73583573	rs56911723	C	CA,CAA	3190.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.163;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;MQRankSum=1.252;QD=13.18;ReadPosRankSum=-0.686;SOR=1.026;set=HC	GT:AD:AF:DP	1/2:46,144,52:0.60,0.21:242
chr10	73591829	rs41306532	G	A	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	73594358	rs3878001	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	73822507	rs1530803	C	T	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	73822957	rs1530802	G	A	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	73823019	rs1668172	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	73824170	rs2242250	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	73824181	rs2242251	C	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	73824203	rs2242252	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	73827292	rs1530804	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	73832859	rs896074	C	T	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	73846826	rs1245546	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	73848105	rs10713496	TG	T	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	73856984	rs3312	A	G	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	73862032	rs1668154	C	T	6624.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	73963044	.	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=6.436;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.183;QD=1.11;ReadPosRankSum=1.101;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr10	73964004	rs4237336	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	73970451	rs7069703	G	T	7119.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr10	74100642	rs9416018	G	A	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	74139200	rs11000276	T	G	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr10	74182917	rs10823922	T	C	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	74183251	rs7069357	G	A	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	74234817	rs915432	T	C	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	74235192	rs5786077	A	AT	233.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	74235771	rs11000322	G	A	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	74268031	rs3793927	T	C	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	74293584	rs10509343	A	T	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	74293601	rs11818304	T	A	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	74452931	.	AGT	A	161	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=22;MQ=60.0;NF=1;NR=5;PP=161;QD=27.3333333333;SC=CTCTTGGGTGAGTGTGTGTGT;SbPval=0.43;Source=Platypus;TC=22;TCF=2;TCR=20;TR=6;WE=74452940;WS=74452921;set=Platypus	GT:AD:AF:DP	1/0:16,6:0.27:22
chr10	74452957	.	TGA	T	113	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=22;MQ=60.0;NF=1;NR=5;PP=113;QD=19.3333333333;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.48;Source=Platypus;TC=19;TCF=2;TCR=17;TR=6;WE=74452966;WS=74452947;set=Platypus	GT:AD:AF:DP	1/0:13,6:0.32:19
chr10	74621739	.	CTTT	C	122.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.35;ReadPosRankSum=-2.100;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	74690437	rs368917423	CT	C	440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.983;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:41,46:0.53:87
chr10	74695287	rs2461917	T	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	74898974	rs370850319	CA	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.245;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr10	75135833	rs71731226	T	TA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.596;QD=0.38;ReadPosRankSum=0.688;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:155,30:0.16:185
chr10	75155544	rs10718150	CA	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.352;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.331;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr10	75185433	.	G	GA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-2.270;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr10	75283637	rs377326169	AT	A	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=41.84;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	75283642	rs371483348	TTA	T	533.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=38.12;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	75302488	.	C	CA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.042;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr10	75490217	rs11814282	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	75519322	rs10740418	T	C	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	75525999	rs3849969	A	G	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	75532848	rs145929404	GCCAGGACTCCAGGTGTCCAGGACTCCAGGTGT	G	3235.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	75545251	rs12256103	A	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	75558867	rs2271271	G	A	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	75559662	rs141230821	C	CTCTA	4445.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr10	75562161	rs13013	C	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	75564660	rs112868774	A	AT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-1.226;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr10	75576849	.	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.730;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.207;QD=2.00;ReadPosRankSum=-0.584;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:110,23:0.17:133
chr10	75599487	.	C	T	2594.77	.	AC=2;AF=1.00;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	75607696	rs67135801	CA	C	2797.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	75612881	rs2250140	T	C	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	75620757	rs2664282	T	C	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	75632760	rs2675671	C	T	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	75672607	rs61567551	C	CA	1222.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.400;QD=16.75;ReadPosRankSum=-1.238;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:6,67:0.92:73
chr10	75673101	rs2227564	T	C	7719.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	75673731	rs2227566	C	T	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	75674740	rs2227571	C	T	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	75842152	rs2270548	G	A	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	75843100	rs1908339	T	A	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	75910955	rs11817132	G	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	76349020	rs112610475	CT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.348;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr10	76429870	rs10740443	T	C	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	76737350	rs17641765	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	76744736	.	G	C	240.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr10	76790935	rs3832681	TA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.853;SOR=0.121;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr10	77159636	.	G	C	10078.77	.	AC=2;AF=1.00;AN=2;DP=364;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr10	77162966	rs72807459	C	T	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	77312171	.	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=-0.343;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:345,71:0.17:416
chr10	77312184	rs1367290	C	T	7319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.013;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.72;ReadPosRankSum=-0.928;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:66,347:0.84:413
chr10	78649399	rs2288840	C	T	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	78729669	rs2288837	A	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	78778734	rs16934182	G	A	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	78782876	rs7078109	T	C	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	78839127	rs139730603	A	AGTGT,AGTGTGT	619.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/2:0.40,0.60:15
chr10	78844579	rs34592624	G	GA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.070;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.107;QD=0.50;ReadPosRankSum=0.945;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr10	78868165	.	C	CA	942.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.386;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:39,70:0.64:109
chr10	79163867	rs596832	G	C	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	79397498	.	TGCC	T	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.105;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:42,7:0.14:49
chr10	79552107	rs1058203	G	A	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	79552151	rs1058202	T	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	79553673	rs2812425	T	C	7040.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	79553688	rs2579150	G	A	8962.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr10	79571893	rs1248625	C	G	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	79575879	rs1248638	A	G	3310.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-0.816;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:2,129:0.98:131
chr10	79579047	rs1248635	A	G	6774.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr10	79579222	rs1248634	G	A	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	79584178	rs1248629	G	C	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	79588534	rs2801822	C	G	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	79588620	rs66642452	GCTCCAGC	G	7678.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,283:0.99:285
chr10	79590726	rs1248663	C	G	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	79595417	rs1248661	C	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	79595473	rs1781797	G	A	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	79606441	rs1248676	A	C	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	79614189	rs1248692	A	G	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	79616605	rs1248696	T	C	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	79628875	rs1248655	A	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	79629085	rs1248656	G	A	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr10	79629127	rs1248657	T	C	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	80288406	rs1865706	T	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	80310465	rs2670191	T	C	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	80310636	rs7090749	G	A	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	80762010	rs368529863	G	GA	152.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.671;QD=12.71;ReadPosRankSum=-1.078;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:2,10:0.83:12
chr10	80763382	rs10762828	C	T	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	80763534	rs10762829	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	81037229	rs1250539	G	A	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	81045207	rs1250569	T	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	81045280	rs1250568	T	C	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	81053475	rs1250560	G	A	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	81053560	rs1250559	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	81058027	rs1250552	A	G	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	81060474	rs1250549	T	C	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	81062107	rs12356376	G	A	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	81065371	rs113334887	C	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	81065774	rs1250557	G	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	81073763	rs2997468	G	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	81074125	rs1782652	T	A	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	81146091	rs74319619	G	A	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	81266411	rs1010929	T	C	14429.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr10	81267591	rs1250778	C	T	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	81286374	rs1250962	A	C	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.30;QD=28.84;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	81286427	rs1250961	G	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.56;QD=39.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	81286437	rs1250960	T	G	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.56;QD=39.62;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	81317045	rs1965708	G	T	9621.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	81317292	rs1965707	G	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.60;QD=33.02;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	81317360	rs1610440	A	G	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.36;QD=28.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	81318545	rs2217231	A	T	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	81318621	rs17884396	C	T	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr10	81318930	rs1250943	C	G	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	81319267	rs1650232	C	T	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	81319400	rs17882203	A	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.93;QD=30.51;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	81319423	rs1975008	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.07;QD=28.38;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	81319458	rs17883613	C	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.97;QD=26.70;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	81319483	rs1975007	A	G	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	81342369	rs34032311	G	T	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.76;QD=25.93;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	81342469	rs2678654	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.50;QD=30.52;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	81343036	rs3855862	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	81371049	rs4253511	C	T	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	81371698	rs72659390	C	T	6700.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	81372166	rs1136452	C	G	9548.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr10	81372231	rs4253514	CG	C	6192.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	81374651	rs1250991	C	T	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	81680104	rs201786505	C	A	7542.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr10	81841692	rs1932574	G	T	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	81901722	rs745182	C	T	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	81904638	rs2819874	G	A	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	81915790	rs2789687	T	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	81917708	rs1079242	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	81918776	rs112550067	C	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	81921918	rs2245168	T	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	81923961	rs2236557	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	81925785	rs2573348	C	T	5893.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=45.69;SOR=1.882;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	81925795	rs9421228	C	T	6540.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=45.11;SOR=1.924;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	81925796	.	GCGCACACACACACA	G,GCA	5868.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=174;set=Intersection	GT:AF:DP	1/2:0.21,0.79:139
chr10	81926702	rs1049550	G	A	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.43;SOR=1.482;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	81993410	rs2945446	T	C	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.494;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=11.292;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-9.731;QD=4.38;ReadPosRankSum=2.747;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:106,46:0.30:152
chr10	81995007	rs1250973	A	G	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:155,139:0.47:294
chr10	81995190	rs377584813	CG	C	1957.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr10	81995240	rs61862376	G	T	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr10	82013134	rs1298908	C	T	15548.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr10	82013146	rs2573326	T	C	17690.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr10	82033594	rs2993763	G	A	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	82033683	rs4933327	G	A	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	82034262	rs2994388	G	A	15154.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr10	82034842	rs10887711	A	G	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	82034854	rs10788546	T	C	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	82040052	rs1143694	A	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	82040346	rs2282367	A	G	13203.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr10	82045354	rs10887721	G	C	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	82049251	.	T	TTTTTTC	1279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.961;MLEAC=1;MLEAF=0.500;MQ=63.44;MQRankSum=0.754;QD=20.00;ReadPosRankSum=-2.192;SOR=1.393;set=HC	GT:AD:AF:DP	0/1:15,49:0.77:64
chr10	82095968	rs1340383	T	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	82111460	rs11202652	T	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	82112488	rs1572819	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	82126808	rs1047952	C	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	82182296	rs1870142	G	A	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	82182328	rs1870143	G	A	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	82182405	rs5786455	C	CT	1357.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	82191643	rs6585994	A	G	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	82269238	rs10785897	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	82394019	rs71310969	G	GT	2081.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	84586960	rs3046292	TAAAAAAAAA	T	1502.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=39.55;ReadPosRankSum=-0.145;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr10	84625107	rs478010	C	T	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr10	84711147	rs4933861	C	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	84745256	rs2295933	C	T	6077.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	85936160	rs4348833	T	C	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	85944313	rs12250279	A	T	3680.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.470;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.30;ReadPosRankSum=-0.459;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:3,155:0.98:158
chr10	85944322	rs35568118	T	A	5249.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.53;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	85957681	rs11200915	A	C	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	85960274	rs11200920	A	C	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	85965819	rs10788335	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	85968037	rs146588811	C	T	15376.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr10	85974236	rs3814213	T	C	13761.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr10	85974381	rs3814212	A	G	5679.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	85992478	rs3814210	T	C	9042.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr10	85992511	rs3814209	T	C	8061.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr10	85993836	rs4933986	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	85993910	rs3814206	G	A	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	85994142	rs3829858	A	G	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	86001255	rs3841414	G	GGCCCAGCAA	1970.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	86004736	rs2279228	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	86004873	rs2279227	T	C	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	86018460	rs3526	A	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	86131671	rs150621117	A	G	10742.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr10	86185654	rs1336202	T	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	87966028	rs56757884	T	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	88126056	rs11202000	T	G	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	88203068	rs7094132	T	C	6898.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	88203208	rs7094269	T	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	88220866	rs7922658	C	T	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	88230874	rs2288362	G	A	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	88233628	rs3758520	C	G	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	88256943	rs4934215	C	T	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	88281346	rs4934218	A	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	88419012	rs3740334	T	C	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	88419641	rs3740335	G	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	88420871	.	CA	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.702;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr10	88422116	rs1079610	C	T	7910.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr10	88426614	rs34106786	TC	T	5886.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	88428335	rs2803558	T	C	6729.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	88445385	rs3740345	G	C	8342.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr10	88458996	.	TTCTCTCTC	T,TTC	4107.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=116;set=Intersection	GT:AF:DP	1/2:0.24,0.76:104
chr10	88486102	rs34647099	CT	C	2835.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	88492235	rs7916248	A	G	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	88492253	rs71487280	CTGTTTGTT	C	2978.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	88492362	rs7899324	G	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	88492409	rs7899337	G	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	88635779	rs11528010	C	A	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	88679356	rs56183521	TG	T	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	88683122	rs7074064	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	88702350	rs4934281	G	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	88717140	rs4244973	T	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	88717154	rs3750823	C	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	88718436	rs1800373	A	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	88730106	rs2279602	C	T	16219.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr10	88730177	rs2279601	A	G	15691.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr10	88730312	rs4869	T	C	14852.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr10	88730374	rs7960	C	T	11063.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr10	88768253	rs2641563	A	G	14868.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:2,573:1.00:575
chr10	88768657	rs1745901	C	T	10768.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr10	88817578	.	GAAA	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-1.349;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr10	88935590	rs11202370	C	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	88939962	rs7081609	T	C	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	88973817	rs28668119	C	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	88975783	rs28533204	C	T	9495.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr10	89468953	rs17173698	G	A	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	89472721	rs148721342	CT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.450;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr10	89473069	.	TAA	T	98.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=16.48;ReadPosRankSum=0.210;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr10	89720633	rs34003473	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-1.064;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:80,19:0.19:99
chr10	90034899	rs45585838	C	T	7299.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	90034982	rs112956101	AT	A	3055.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	90074140	rs11202710	G	A	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=3.750;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	90074145	rs11202711	A	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.50;SOR=3.116;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	90305177	rs11202769	C	T	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	90342837	rs2296545	C	G	13584.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr10	90350244	rs41296133	G	A	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	90356598	rs1409136	A	G	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	90365290	rs2274312	A	G	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	90484243	rs376036	C	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	90484420	rs56390975	C	A	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	90484422	rs11358016	GA	G	4382.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	90486793	rs407433	T	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	90530660	rs10788611	C	A	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	90534698	rs303471	G	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	90534759	rs11202849	G	A	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	90565659	rs139608926	CA	C	2284.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	90574222	rs303524	C	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	90588154	rs1977537	A	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=3.461;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	90588161	rs1029025	C	T	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=2.602;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	90665355	rs17114071	G	A	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	90670602	rs142109544	T	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	90767395	rs2031611	G	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	90770439	rs2296600	C	G	9686.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr10	90771829	rs2234978	T	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	90773303	rs1571019	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	91065949	rs17468739	A	C	8763.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,325:1.00:326
chr10	91066075	rs2070845	A	G	9084.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	91066460	rs954439	T	A	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	91066769	rs1727	C	A	7324.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	91092189	rs12255504	C	G	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	91099630	rs3780878	T	C	9562.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr10	91099943	rs10749607	C	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	91137826	rs304504	T	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	91143529	rs304494	T	A	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	91162497	rs303211	A	G	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	91172663	rs304439	C	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	91178000	rs304448	C	T	12331.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr10	91371445	rs7896079	C	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	91371844	rs3802655	C	T	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	91373511	rs7079690	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	91373624	rs7091626	G	A	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	91373847	rs7076397	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	91477123	rs76520569	C	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	92503476	rs55802807	C	G	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	92635211	rs149175620	T	TA	387.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	92638707	rs75192201	C	CAGT	1266.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	92645687	rs4144422	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	92655338	rs59891149	A	AT	603.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr10	92655559	rs10881848	T	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	92655566	.	T	A	1141.77	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	92655568	.	A	G	1171.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	92655569	rs150762208	T	TCA	1162.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	92662860	rs4568910	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	92663108	rs7089472	C	T	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	92675649	rs3839929	GA	G	901.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	92676187	rs112074175	ATG	A	1168.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	92678740	.	AATAAATAAATATATATATATATAT	A	10425.73	.	AC=2;AF=1.00;AN=2;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=44.18;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	92680929	rs10881855	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	93170250	rs7081569	C	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	93170365	rs71025355	CG	C	860.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	93390680	rs3781228	G	A	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	93577141	rs1539041	T	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	93579003	.	C	CTT	1970.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=-0.680;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:2,72:0.97:74
chr10	93579117	rs200116542	C	CTT	969.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=0.343;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:18,48:0.73:66
chr10	93579934	rs17107084	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	93586715	rs2275646	C	T	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	93588201	rs1572933	G	C	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.71;SOR=1.825;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	93588208	rs1572934	G	A	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=1.994;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	93600480	rs17107140	G	A	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	93609210	rs41286940	G	A	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	93610896	rs3758501	C	T	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	93611176	rs112177544	A	ATATG	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	93617306	rs1340420	A	G	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	93668110	rs1107947	T	A	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	93683710	.	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=0.728;SOR=0.012;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr10	93695310	rs72823185	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	93716899	rs7894570	G	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	93717189	rs72823191	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	93719497	rs10581040	GTATATATA	G	2328.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;QD=40.15;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	93719507	.	A	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.830;QD=15.05;ReadPosRankSum=0.085;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr10	93719509	.	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.428;QD=1.37;ReadPosRankSum=1.456;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr10	93756883	rs10591030	ACT	A	5410.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	93768094	rs113804327	T	TG	425.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	93788516	.	A	AT	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.446;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr10	93812334	rs1711841	G	A	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	93841227	rs2676811	A	G	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	93851714	rs1229578	T	C	7174.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr10	93999850	rs3824734	A	G	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	94229912	rs4646957	C	T	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	94266330	rs34053974	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.027;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr10	94274809	rs17875327	A	G	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	94294291	rs4646955	A	G	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	94369023	.	CAG	C	127	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=3;MGOF=24;MMLQ=22;MQ=54.73;NF=5;NR=3;PP=127;QD=16.25;SC=TTTGAGAAGTCAGAGAGAGAG;SbPval=0.27;Source=Platypus;TC=16;TCF=7;TCR=9;TR=8;WE=94369034;WS=94369013;set=Platypus	GT:AD:AF:DP	0/1:8,8:0.50:16
chr10	94399508	.	G	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.208;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr10	94490174	rs2488075	T	C	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	94507612	rs2488066	A	G	10911.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr10	94511683	rs2096177	G	T	12762.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr10	94594416	rs11408607	A	AT	1811.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:19,101:0.84:120
chr10	94594565	rs2490741	G	A	6164.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	94675359	.	A	T	49	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=15;MQ=60.0;NF=2;NR=1;PP=49;QD=27.9237375157;SC=AAAGGAAATGAGAAGGCAAAA;SbPval=0.7;Source=Platypus;TC=3;TCF=2;TCR=1;TR=3;WE=94675367;WS=94675356;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	94695555	rs1326330	G	A	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	94695617	rs1326331	C	T	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	94816807	rs60582805	G	GA	3966.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	94816859	rs12783274	G	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	94820860	rs1538648	A	G	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	94822686	rs55843714	C	T	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	94822895	rs12263200	G	T	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	95070037	rs2761286	A	G	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	95070080	rs2797581	C	T	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	95070526	rs787661	G	A	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	95072906	rs787666	T	C	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr10	95083204	rs148815470	ATTTC	A	668.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	95089762	rs17477816	T	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr10	95095600	rs787689	G	C	8514.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr10	95097537	rs1614065	T	C	6884.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	95099822	rs2761330	G	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	95099849	rs2761329	G	A	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	95107324	.	A	AAAAAAAAAG	1015.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=19.243;MLEAC=1;MLEAF=0.500;MQ=63.48;MQRankSum=0.431;QD=42.32;ReadPosRankSum=2.515;SOR=3.893;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr10	95111716	rs787624	C	A	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	95113491	rs787625	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	95115339	rs5787054	A	AAAAAT	2026.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr10	95119919	rs787634	T	C	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	95121135	rs151121728	CCA	C	1209.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	95132905	rs787647	C	T	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	95136950	rs787622	A	T	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	95152624	rs788084	T	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	95159025	rs701862	T	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	95162496	rs701875	A	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	95162525	rs3841653	TC	T	1515.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	95164040	rs788088	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	95216623	rs701882	A	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	95237861	rs2096181	C	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	95237899	rs58873758	ATAT	A	1587.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=42.91;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	95237963	rs3938769	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	95238050	rs6583893	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	95241999	rs947597	A	C	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	95262981	rs7080916	A	G	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	95266683	rs947599	A	G	7265.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	95276673	rs4919224	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	95278829	rs2280605	A	G	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	95278841	rs2280606	C	T	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	95279506	rs2293277	A	T	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	95279653	rs7068719	A	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	95287643	rs34668129	G	GA	889.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=-0.330;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:6,48:0.89:54
chr10	95360027	rs36014035	A	C	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	95360109	rs57477607	C	G	10667.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr10	95360380	rs61461737	A	G	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr10	95360396	rs116736522	G	C	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	95360411	rs57029781	G	A	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	95360846	.	C	CGG	6949.73	.	AC=2;AF=1.00;AN=2;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	95360863	.	T	TCACCC	2914.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.50;ReadPosRankSum=0.823;SOR=7.024;set=HC	GT:AD:AF:DP	1/1:1,66:0.99:67
chr10	95372734	rs1131978	G	A	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	95372764	rs12781149	C	T	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	95381773	rs701865	T	A	10521.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr10	95388914	rs2857300	A	G	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	95389041	rs714550	G	A	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	95389083	rs714549	A	G	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	95389124	rs714551	G	A	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	95394455	rs1856563	T	C	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	95395245	rs11187564	C	T	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=2.350;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	95395245	.	CCA	TCG	1552	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=1;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=71;NR=21;PP=1552;QD=17.4507377702;SC=CACCTTTTATCCATTTCAGAC;SbPval=0.78;Source=Platypus;TC=101;TCF=73;TCR=28;TR=92;WE=95395255;WS=95395235;set=Platypus	GT:AD:AF:DP	1/1:9,92:0.91:101
chr10	95395247	rs616522	A	G	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.79;SOR=2.086;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	95400510	rs12780304	T	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	95405665	rs3831275	CTA	C	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	95405814	rs1409332	C	A	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	95415734	rs142512994	GAC	G	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=1.281;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr10	95422245	rs10882298	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=21.40;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	95432968	rs1572773	T	C	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	95433124	rs1326214	A	G	13012.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:1,491:1.00:492
chr10	95443688	rs8181435	C	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	95444931	rs767701	T	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	95454449	rs11187593	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	95454470	rs55728763	TAAAAAAAAA	T	736	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=18.865;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.45;SOR=2.897;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr10	95454681	rs2275438	G	C	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	95454768	rs3215997	TA	T	493.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	95457831	rs144659491	C	CA	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr10	95458141	rs11187597	A	G	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr10	95459698	rs2275441	G	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	95459817	rs726817	C	T	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	95549836	rs368174638	C	CTT	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=1.737;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr10	95552653	rs1111820	T	C	10497.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr10	95718474	rs829225	A	G	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	95931011	rs61751494	A	G	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	95987313	rs11187825	C	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	96006281	rs61751498	G	A	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	96013824	rs1408820	C	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	96014622	rs10786156	C	G	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	96018510	rs4918182	A	T	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	96022618	rs11307441	GT	G	1051.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:3,55:0.95:58
chr10	96030458	rs1969867	G	T	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	96039597	rs2274224	G	C	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	96039708	rs2274225	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	96163039	rs2477534	C	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	96201839	rs200847130	CTT	C	795.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=6.703;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.601;QD=13.96;ReadPosRankSum=-0.667;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr10	96257048	rs11187985	A	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	96271298	rs2860761	A	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	96282390	rs10882469	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	96305504	rs2274096	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	96305729	rs10882474	T	C	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	96313960	rs11188019	A	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	96322404	rs10882477	G	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	96334578	rs7079934	T	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	96341336	rs12220588	A	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	96343623	rs962234	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	96353201	rs3781262	G	A	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	96353422	rs11346357	AT	A	923.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:4,56:0.93:60
chr10	96356571	rs7906968	A	T	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	96357022	rs2274417	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	96466824	rs7904929	C	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	96796861	rs1058932	G	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	96802598	rs2275620	A	T	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	96818362	rs11572101	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	96827119	rs11572078	T	TA	2319.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr10	96827178	rs2275622	T	C	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	96954511	rs681838	T	A	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	97101532	rs2274628	G	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	97110879	rs6583995	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	97116219	rs7076888	C	T	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	97127264	rs6583997	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	97127462	rs6583998	C	A	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	97127577	rs7074224	C	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	97137105	rs1536556	A	G	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr10	97141523	rs2274490	G	A	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	97154682	rs55688714	A	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	97154698	rs11188311	G	A	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	97158713	rs2274489	G	A	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	97192324	rs943542	A	G	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	97381077	.	CTTTTT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=0.842;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr10	97385242	rs10509688	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	97392969	rs3750701	G	A	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	97392993	rs3750700	T	C	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	97393475	rs11188409	C	T	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	97397227	rs2275273	T	C	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	97412921	rs9787589	T	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	97440097	.	TCA	T	583	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=13;NR=0;PP=583;QD=48.1538461538;SC=TTATGTCAGCTCACTTTAAAC;SbPval=1.0;Source=Platypus;TC=13;TCF=13;TCR=0;TR=13;WE=97440116;WS=97440094;set=Platypus	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	97440098	.	CACT	C	727.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.52;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	97440103	.	T	TGG	862.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.75;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	97440106	.	A	G	902.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	97440107	.	CA	C	893.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	97440493	rs143448527	GA	G	217.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	97446206	rs2297788	G	A	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	97447373	rs10786229	A	T	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	97471925	rs12244559	T	C	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	97769856	rs4145209	G	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	97772253	rs3748224	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	97772496	rs10748652	T	A	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	97778853	rs1414922	C	T	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	97779219	rs1414921	G	A	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	97784596	rs77537360	G	A	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	97816368	rs117825405	A	G	8744.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	97816420	rs7099399	G	A	13863.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr10	97920099	rs67530050	T	TC	12486.73	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr10	97964154	rs10748665	C	T	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	97964157	rs2242137	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	97983526	rs10882746	C	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	97987144	rs2305846	C	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	98006857	rs2168732	A	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	98007925	rs186773959	A	G	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	98007933	rs9663433	G	A	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=1.375;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	98007943	rs9664029	T	A	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.17;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	98078127	rs7081385	C	T	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	98078239	rs6584066	A	G	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	98082517	rs7097016	T	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	98084231	rs2181320	A	G	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	98088387	rs10882773	A	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	98095794	rs10736102	T	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	98116076	rs2861575	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	98144312	rs7085022	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	98240035	rs2281801	A	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	98240382	rs243	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	98287094	rs10786298	T	A	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	98287261	rs3789957	G	C	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	98311190	rs10882816	G	T	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:8,129:0.94:137
chr10	98312891	rs10736113	C	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	98319236	rs10128106	G	T	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	98319367	rs3818389	A	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	98319503	rs3818390	A	T	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	98321928	rs7094142	A	T	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	98346411	rs11188836	A	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	98380074	rs78780339	T	C	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	98380277	rs3748234	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	98380363	rs7910630	A	G	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	98383329	rs4917745	G	T	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	98386433	rs1469847	C	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	98386558	rs4344416	G	A	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	98392872	rs6584092	A	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	98408714	rs912483	A	G	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	98416533	rs3748231	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	98469507	rs3748229	C	A	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	98797351	rs2805586	A	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	98797647	rs34707456	G	T	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	98808866	rs2805588	C	G	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	98817687	rs7914872	A	G	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr10	98820528	rs33970910	C	G	7448.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	98923361	rs2636772	T	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	98979111	rs10714841	AT	A	458.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	98988759	rs1468069	A	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	98989454	rs2297987	A	G	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	99003613	rs793528	A	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	99019144	rs3740522	C	T	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	99019177	rs2253301	A	G	9399.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr10	99025611	rs10882884	T	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	99079023	rs11189127	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	99116903	rs1048445	C	T	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	99117097	rs7923385	T	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	99118382	rs2297988	T	C	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	99123457	rs11189165	A	G	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	99125722	rs11189167	A	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	99125769	rs11189168	T	C	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	99125788	rs10882907	G	C	6697.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	99126249	rs2275581	G	A	11143.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr10	99130127	rs3737194	A	G	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	99139600	rs11189174	C	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.84;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	99140511	rs7078004	A	G	7962.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	99140969	rs7096801	T	C	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	99141205	rs2275089	A	G	9196.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr10	99141484	rs12218483	C	T	10116.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr10	99141663	rs11189177	C	T	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	99144832	.	CCCCCCACCTCGGCAGCCTGGACACAGGCCCTGAGCA	C	2084.73	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	99145179	rs3818787	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	99147975	rs869967	T	C	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	99148151	rs2275090	A	G	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	99153540	rs7898743	T	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	99155984	rs3814553	G	A	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	99156273	rs11189200	C	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	99160046	rs2297668	C	T	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	99160152	rs1048442	A	G	12450.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr10	99160965	rs2275091	A	G	10874.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr10	99184656	rs59932350	GAA	G	75.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.210;QD=12.52;ReadPosRankSum=0.674;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr10	99198507	rs11316935	AT	A	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=2.025;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:13,34:0.72:47
chr10	99215953	rs3818909	G	C	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	99216432	rs10882939	C	T	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	99219404	rs29001331	TG	T	7128.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	99219885	rs2152092	G	A	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	99229394	rs2275583	G	A	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	99240048	rs7897727	C	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	99240758	rs2275586	G	C	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	99258223	rs3750558	T	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	99337473	rs10786357	T	C	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	99337572	rs7094973	G	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	99376843	rs4919121	A	C	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	99498234	rs3818876	G	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	99504630	rs10882993	G	T	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	99504725	rs10882994	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	99507869	rs11189352	T	C	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	99509457	rs946778	T	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	99509969	rs3750615	T	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	99510068	rs3750614	G	T	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr10	99510284	rs3829137	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	99512472	rs1538723	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	99514645	rs7922907	A	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	99516955	rs10882995	G	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	99517355	rs3750612	A	G	8670.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr10	99518810	rs1981238	C	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	99518874	rs10882996	G	A	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.35;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	99518901	rs12412543	G	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	99519097	rs1981237	A	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	99531571	rs11815012	C	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.24;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	99625319	rs56007204	C	T	11687.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr10	99682981	rs894375	T	C	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	99991408	rs1952061	A	G	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	100003785	rs1359508	T	C	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	100011970	rs3750598	G	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	100012011	rs10748722	C	T	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	100013244	rs3750599	A	C	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	100020880	rs33995374	C	T	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	100021983	rs746257	G	A	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	100022446	rs10736125	A	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	100022917	rs112780536	A	ATG	634.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=35.26;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	100183774	rs10883093	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	100219314	rs10883099	G	A	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	100219374	rs10883100	T	A	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	100219519	rs11189618	G	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	100250019	rs59184373	GACACACACAC	G	1586.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	100481315	.	AAAAT	A	49	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=2;MGOF=5;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=49;QD=29.0;SC=TCTTAAGACCAAAATAAATAA;SbPval=1.0;Source=Platypus;TC=14;TCF=8;TCR=6;TR=2;WE=100481326;WS=100481305;set=Platypus	GT:AD:AF:DP	0/1:12,2:0.14:14
chr10	100991971	.	TACACAC	T,TAC	1552.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=40;set=Intersection	GT:AF:DP	1/2:0.25,0.75:36
chr10	100991976	.	A	G	600.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=-2.434;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr10	100991978	.	A	G	132.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=2.010;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr10	100991979	.	C	T	600.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=-2.552;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr10	100991981	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=2.545;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr10	101089772	rs112168939	C	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	101090428	rs2862600	T	G	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr10	101120787	rs3763792	C	T	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	101124157	rs368559277	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-2.821;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:82,22:0.21:104
chr10	101137063	rs3829211	G	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	101147692	rs2298316	G	A	16288.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr10	101150256	rs3793931	A	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	101293035	rs41290504	C	A	8412.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	101372411	rs880568	T	C	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr10	101379795	rs12252561	G	C	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	101439252	rs3740079	G	A	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	101462193	rs10748790	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	101473218	rs2231687	A	G	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	101480604	rs3832650	C	CAG	2097.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	101489216	rs58771687	CAAAA	C	1086.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;QD=35.06;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	101492241	rs2231675	G	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	101544447	rs927344	A	T	7211.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	101551902	rs2756108	C	T	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	101563815	rs2273697	G	A	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	101571528	rs3740074	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	101576960	rs3740073	T	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	101591944	rs4148396	T	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	101841153	rs10883439	A	G	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	101912064	rs2862954	T	C	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	101912194	rs1408579	C	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	101953705	rs11597086	A	C	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	101967212	rs7909855	C	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	101977883	rs2230804	C	T	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	101980459	rs986266	A	G	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	101992923	.	TA	T	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.902;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.668;QD=1.43;ReadPosRankSum=-2.350;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr10	102006429	rs4919438	T	C	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	102016268	rs2270961	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	102027407	rs12784396	C	T	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	102054452	rs11597005	A	G	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	102056970	rs2278841	A	G	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	102056970	.	AGG	GGT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=5;HapScore=1;MGOF=12;MMLQ=28;MQ=60.0;NF=43;NR=44;PP=2947;QD=20;SC=ACCAGCCTATAGGGGGAGGGG;SbPval=0.45;Source=Platypus;TC=95;TCF=45;TCR=50;TR=87;WE=102056980;WS=102056960;set=Platypus	GT:AD:AF:DP	1/1:8,87:0.92:95
chr10	102056972	rs2278840	G	T	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.48;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	102057005	rs2278839	G	A	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	102088906	rs3829159	C	T	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	102104521	rs735877	C	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	102114463	rs3071	A	C	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	102265056	rs140191147	AAC	A	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.499;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr10	102295645	.	G	GT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.133;QD=0.57;ReadPosRankSum=0.200;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:190,43:0.18:233
chr10	102306228	rs116854727	C	T	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	102506070	rs4472867	G	C	11612.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	102506103	rs4405241	C	A	8571.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	102539429	rs7901210	C	G	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	102568983	rs1800898	A	C	7307.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	102584597	rs11190717	G	A	12824.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr10	102673063	rs3802725	G	T	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	102684380	rs10883563	C	A	7876.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr10	102689217	rs2273654	T	C	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	102689504	rs10786614	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	102743662	.	C	T	492.77	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr10	102744331	rs11591349	A	T	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	102746231	rs7184	C	T	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	102762256	rs752974	C	T	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	102770082	rs807023	T	G	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr10	102770293	rs200896335	T	TGCTGCG	4666.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	102770327	rs807022	A	G	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	102775349	rs34125357	CT	C	3968.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	102777461	rs10786615	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	102777768	rs11190793	C	G	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	102780265	rs7075659	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	102780312	rs7075685	G	T	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	102780354	rs77484072	TG	T	5227.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	102783678	rs6584410	T	C	8602.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr10	102792295	rs807014	G	A	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	102824349	rs807037	G	C	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr10	102997581	rs678741	G	A	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	103221870	rs5787432	CAGG	C	3652.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	103281722	rs9420854	C	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	103285900	rs17767748	C	T	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	103291249	rs9420859	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	103292566	.	C	CGCGT	337	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=2;HapScore=1;MGOF=69;MMLQ=18;MQ=59.67;NF=29;NR=2;PP=337;QD=11.2258064516;SC=CGCGCGCGCGCGCTTAGCTAT;SbPval=0.8;Source=Platypus;TC=62;TCF=56;TCR=6;TR=31;WE=103292574;WS=103292557;set=Platypus	GT:AD:AF:DP	1/0:31,31:0.50:62
chr10	103340144	rs3730476	A	G	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	103340179	rs3730475	A	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	103340235	rs3730474	T	C	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	103342783	rs3730467	G	T	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	103343533	rs3730465	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	103344589	rs3730463	T	G	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	103345940	rs3730462	CTGTTG	C	1673.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	103354554	rs7911520	A	G	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	103542959	rs935445	CC	GG	34393.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,767:1.00:767
chr10	103567665	rs372242564	GA	G	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.723;QD=0.90;ReadPosRankSum=1.814;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:115,30:0.21:145
chr10	103573222	rs11191118	C	T	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	103717493	rs376923161	T	TA	716.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.614;QD=10.39;ReadPosRankSum=-0.693;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:21,48:0.70:69
chr10	103766490	.	AT	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.902;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr10	103904763	rs11357964	TC	T	3012.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.42;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	103908080	rs3740405	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	103988265	rs36103207	G	A	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	104120731	.	C	CAA	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=4.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.209;SOR=1.703;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr10	104121813	rs140052457	T	C	691.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.71;ReadPosRankSum=-1.195;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr10	104122842	rs1890060	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	104128954	rs7902882	T	A	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	104136469	rs2180707	T	C	6871.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	104156390	rs138364110	G	GT	4833.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	104157727	rs4919632	C	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	104158933	rs3740418	C	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	104159196	rs4919633	A	G	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	104160434	rs4919634	A	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	104163489	rs7068416	G	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	104163569	rs11191283	G	A	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	104167034	rs75779120	G	A	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	104179219	rs56384670	C	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr10	104184213	rs41287462	G	A	13564.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:1,517:1.00:518
chr10	104184953	rs11597439	C	G	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	104184981	rs11593146	A	G	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	104196465	rs2224374	T	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	104214080	rs148334455	CT	C	2335.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.601;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.302;QD=18.25;ReadPosRankSum=1.614;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:8,120:0.94:128
chr10	104229057	rs35597970	C	CA	1781.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	104229785	rs41306870	C	T	8769.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr10	104230930	rs68007409	TTCGGTGCTGGG	T	5183.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	104231054	rs11191295	A	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=28.26;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	104231234	rs913028	T	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	104231651	rs7081110	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	104231662	rs7081467	G	C	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	104232716	rs3740415	G	A	11590.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr10	104232809	rs3740414	T	G	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	104235809	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=-0.697;QD=0.87;ReadPosRankSum=0.381;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr10	104235832	.	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.090;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=1.591;QD=4.42;ReadPosRankSum=-1.284;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr10	104241983	rs12763720	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	104264107	rs2274351	C	T	8459.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr10	104269217	rs2281880	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	104356822	rs10786690	A	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	104387019	rs12414407	T	C	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	104389932	rs4917980	T	G	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	104414221	rs3850699	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	104415093	rs34032774	CT	C	2689.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	104415720	rs4274160	T	C	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	104415810	rs3217079	GCTCTCCCTGGA	G	15058.73	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr10	104459079	rs59504153	TAA	T	2257.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	104465374	rs12761195	T	C	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	104473813	rs2248684	C	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr10	104474107	rs2248679	G	A	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr10	104486304	rs2244647	G	C	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	104487072	rs2244518	G	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	104489011	rs2244254	G	C	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	104492707	rs2778037	G	C	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	104493444	rs11191381	C	T	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	104536365	rs2254563	C	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	104572276	rs284861	A	G	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	104590836	.	AGGGAACCCTGATCTGAGGATGTAGCCTTATTATGG	A	2908	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=0;NR=5;PP=2908;QD=20;SC=GGCCCTGCCCAGGGAACCCTG;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=5;WE=104590878;WS=104590826;set=Platypus	GT:AD:AF:DP	1/1:1,5:0.83:6
chr10	104591152	rs10883783	T	A	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	104592249	rs4919686	A	C	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	104595248	rs4919687	G	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	104596924	rs6163	C	A	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	104596981	rs6162	G	A	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.61;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	104597152	rs743572	A	G	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	104679383	.	C	T	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DP=638;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.547;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:525,108:0.17:633
chr10	104860395	rs2863727	T	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	105108810	.	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=6.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.607;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:68,15:0.18:83
chr10	105128134	rs10883859	T	G	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	105139888	.	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-1.791;QD=1.76;ReadPosRankSum=-2.906;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr10	105144986	rs7069667	A	G	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	105165615	rs7919031	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	105176179	rs7894407	T	C	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	105214932	rs729211	T	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	105215016	rs2986016	A	G	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	105215077	.	G	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.007;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:195,48:0.20:243
chr10	105218252	rs2986017	A	G	21362.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,483:1.00:483
chr10	105218252	.	AGC	GGT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=3;HapScore=1;MGOF=6;MMLQ=24;MQ=60.0;NF=212;NR=204;PP=2947;QD=20;SC=CCGGCGGCCCAGCGGCCGCTT;SbPval=0.55;Source=Platypus;TC=436;TCF=220;TCR=216;TR=416;WE=105218262;WS=105218242;set=Platypus	GT:AD:AF:DP	1/1:20,416:0.95:436
chr10	105218254	rs4918016	C	T	21362.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,471:1.00:471
chr10	105218359	rs2986018	T	C	10089.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr10	105233110	rs2986035	C	T	8370.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr10	105254090	rs2986041	G	T	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	105344756	rs2236209	T	C	6323.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	105361816	rs4918031	T	G	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	105362209	rs4917396	T	C	16695.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr10	105363289	rs3740471	T	C	11575.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr10	105365386	rs7088714	A	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	105428453	rs10533306	CAG	C	17487.73	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr10	105483964	rs12220667	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	105495612	rs6584568	T	C	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	105614884	rs4918064	A	G	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	105615105	rs10883929	G	C	11610.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr10	105657316	rs10786775	G	C	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	105658588	rs2902639	G	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	105659826	rs2487999	T	C	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	105670134	rs200538919	TG	T	912.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	105758670	rs10883960	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	105763026	rs3740469	C	T	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	105768158	rs805664	A	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr10	105781596	rs68117222	CAT	C	4358.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	105793173	rs1747675	T	G	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr10	105793587	rs11596192	C	A	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	105793750	rs17116350	T	C	12845.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr10	105796399	rs2274098	G	C	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	105796449	rs2476957	A	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	105796738	rs805714	A	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	105796819	rs2476958	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	105797378	rs2282437	G	A	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	105797693	rs61382109	TA	T	914.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;MQ=60.39;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	105797989	.	TACACACACACACACACACACAC	T,TAC	1945.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=57;set=Intersection	GT:AF:DP	1/2:0.20,0.80:51
chr10	105798872	rs2274100	T	C	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	105799216	rs2296219	G	T	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	105799550	rs376820281	ACACG	A	199.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.818;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr10	105799552	rs67083195	ACG	A	770.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr10	105799599	rs11191905	C	A	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	105800321	rs12763538	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.01;QD=23.54;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	105800348	rs139480552	ATGGATGGATAGG	A	717.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	105801253	rs4918079	G	A	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	105803080	rs2147269	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	105805310	rs805719	G	A	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	105805436	rs805720	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	105806310	rs805721	C	A	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	105810400	rs805722	T	C	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	105810879	rs805723	C	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	105814826	rs805691	C	A	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	105814937	rs805692	C	T	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	105815202	.	T	TCTCACA,TCTCACACA	2770.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=66.09;QD=71.04;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,18,21:0.46,0.54:39
chr10	105815241	rs1747677	A	C	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	105816685	rs805696	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	105816916	rs805698	C	T	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	105817043	rs805699	C	T	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	105819956	rs805701	G	A	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	105821136	rs805704	A	T	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	105821294	rs805705	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	105821836	rs805706	C	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	105824333	rs805708	G	A	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	105837000	rs2274106	A	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	105885525	.	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.74;ReadPosRankSum=-0.561;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr10	105991884	rs789577	T	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	106075081	rs34043167	G	A	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	106401380	rs117144385	G	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	106582029	rs1490182	C	T	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	106602362	rs10884052	G	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	106602496	rs5787553	C	CT	5552.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	106865381	rs17118359	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	106907440	rs791125	C	T	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	106907586	rs791126	C	G	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	106916819	rs2297500	G	A	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	106923973	rs11192344	C	T	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	106927230	rs12411545	C	T	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	107005570	rs72819920	C	T	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	108337077	rs3839910	G	GA	3818.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr10	108339116	rs41310306	G	C	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	108356938	rs56063040	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	108367020	rs7082289	C	T	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	108371571	rs137930414	A	AGTTT	2178.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	108380006	.	CAG	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=1.950;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr10	108380213	rs4917481	G	A	9562.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr10	108389111	rs3802553	A	G	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	108389218	rs8181286	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	108389249	rs1322004	T	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	108427594	rs17121157	A	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	108427624	rs12412558	A	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;QD=39.94;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	108427644	rs12415278	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	108427682	rs66783381	CA	C	124.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;MQRankSum=0.282;QD=13.87;ReadPosRankSum=-0.000;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr10	108439103	rs821929	A	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	108447836	rs821935	C	T	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	108466412	rs2756231	C	T	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	108469161	rs2756232	C	G	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.32;SOR=1.947;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	111625108	rs483072	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	111631665	rs2274978	C	G	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	111631781	rs2274979	G	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	111633027	rs147857033	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	111637635	rs2273740	A	C	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	111647738	rs472049	C	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	111648006	rs2273739	G	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	111652610	rs3737153	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	111667664	rs944969	T	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	111667702	rs686155	T	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	111683280	rs145751207	CGGCG	C	1482.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	111706856	rs12569906	A	T	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	111711658	rs12257668	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	111876987	.	G	GT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=6.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-1.606;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr10	111878510	rs12268910	T	G	9061.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:3,331:0.99:334
chr10	111886089	rs3731566	G	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	111890362	rs13306109	C	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	111892132	rs139595633	C	T	8214.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr10	112004562	rs199913141	CT	C	972.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;MQRankSum=0.469;QD=17.07;ReadPosRankSum=-0.583;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,55:0.96:57
chr10	112044553	rs5787843	G	GTTC	902.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.020;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:25,56:0.69:81
chr10	112044895	rs139187896	C	T	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	112054908	rs7074311	C	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	112266771	rs1889567	C	T	10613.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr10	112266822	rs1889566	GC	AT	14869.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	112327476	rs148267784	C	A	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	112328838	rs4917577	C	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	112333696	rs79110044	G	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	112336977	rs78316594	A	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr10	112337693	rs11195194	T	A	1789.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	112341636	rs2275570	A	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	112343591	rs11195199	G	A	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=1.793;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	112343923	rs11195200	T	C	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	112349879	rs3737294	A	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	112356331	rs7075340	G	A	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	112360105	rs3737292	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	112360315	rs35608195	GT	G	1185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.465;QD=9.12;ReadPosRankSum=-0.424;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:33,97:0.75:130
chr10	112360936	rs11195213	A	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	112361870	rs2419565	A	G	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	112362019	rs2039874	G	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	112543217	rs6585012	G	A	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	112543345	rs1570426	G	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	112544344	rs7073950	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	112544655	rs7077757	C	T	8283.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr10	112572458	rs1417635	G	C	11810.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr10	112579663	rs11195343	C	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	112580880	rs10787283	C	T	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	112583189	.	CTTTTTTTTT	C	637.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.37;ReadPosRankSum=0.097;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr10	112590810	rs7070640	G	C	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	112595719	rs942077	G	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	112641053	rs7081726	A	G	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	112667273	rs34559519	G	GA,GAA	833.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.938;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.56;MQRankSum=0.503;QD=15.73;ReadPosRankSum=1.929;SOR=1.429;set=HC	GT:AD:AF:DP	1/2:9,25,19:0.47,0.36:53
chr10	112696347	.	C	CTTTTTTTTTT	590.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.13;QD=39.38;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	112764594	rs1980869	T	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	113913222	rs2297991	T	C	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	113915574	rs5787948	C	CA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.062;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	113917085	rs2254537	T	A	9034.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr10	113917982	rs6585140	C	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	113920465	rs2277207	G	A	10249.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr10	113920652	rs3824626	T	C	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	113921354	rs2250802	G	A	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	113923595	rs10736219	C	G	11218.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr10	113926012	rs10749108	G	A	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	113928487	rs2251579	A	C	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	113935379	rs10787428	T	C	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	113937941	rs2487294	G	T	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	113940329	rs2792751	T	C	7671.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr10	114061979	rs10749114	G	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	114168056	.	CA	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.590;QD=2.17;ReadPosRankSum=1.327;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:57,31:0.35:88
chr10	114169552	rs7919710	G	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	114181683	rs2255740	A	G	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	114185353	rs68098308	T	TAA	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=0.061;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr10	114185856	rs34341101	T	TG	987.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	114186624	rs2256368	G	A	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	114224502	rs3740143	C	G	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	114849353	rs10749127	C	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	114886803	rs141183813	A	G	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,278:1.00:279
chr10	114889837	rs34096467	TC	T	384.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;MQ=62.13;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	114901194	rs60649625	TG	T	5893.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	114901201	rs56913138	G	T	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	114903859	.	CTGTGTGTGTGTG	C,CTG	982.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.27;QD=37.80;SOR=2.670;set=HC	GT:AD:AF:DP	1/2:0,9,17:0.35,0.65:26
chr10	115334124	rs3740530	C	T	5625.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	115335843	rs911709	A	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	115336758	rs2302374	A	C	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr10	115338615	rs11575684	A	G	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	115340492	rs2286742	G	A	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	115341545	rs2181082	G	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	115343803	rs911703	C	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	115343831	rs911701	A	T	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	115343852	rs911700	C	G	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	115345850	rs3781378	T	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	115349397	rs11196388	AG	A	2870.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	115357078	rs12241995	G	A	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	115357131	rs113389465	CA	C	1434.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;MQ=60.83;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	115370113	rs11333099	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=1.18;ReadPosRankSum=2.073;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr10	115370254	rs12243176	A	G	11656.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr10	115370274	rs10749138	T	C	10608.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:2,266:0.99:268
chr10	115371873	rs1539588	G	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	115373851	rs2419850	T	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	115375528	rs11196397	C	A	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	115393929	rs3189030	G	A	6692.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	115400958	rs1539592	C	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	115400972	rs1539593	G	A	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	115401031	rs5788038	AT	A	2985.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr10	115401081	rs3127105	T	C	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr10	115401264	rs3121465	A	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	115405615	rs3127106	T	C	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=25.86;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	115405664	rs3121478	C	T	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=25.69;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	115405703	rs35741231	G	GAA	3867.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;QD=30.45;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	115405791	rs3121479	A	T	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	115406485	rs3121483	C	T	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	115410234	rs2185913	T	C	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	115411614	rs2154028	A	G	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	115412686	rs3121488	G	A	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	115417289	rs1891762	G	A	10888.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr10	115423094	rs12770981	G	C	8852.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr10	115439530	rs28411397	G	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	115439569	rs7921977	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	115480958	rs144116300	G	A	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	115481018	rs3814231	C	T	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	115489152	rs2227310	C	G	8807.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr10	115489167	rs2227309	G	A	9049.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	115609915	rs3750898	C	G	6899.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	115618246	rs2301180	T	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	115644040	rs7913176	G	A	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	115675025	rs7895609	G	A	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	115805056	rs1801253	G	C	16120.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr10	115933905	rs17091403	C	T	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	115987550	rs11196660	G	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	116032519	rs597371	A	G	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	116058933	rs1889450	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	116060194	rs3214266	A	AG	7392.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr10	116060387	rs2286396	T	C	11648.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr10	116068176	rs581327	A	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	116073696	rs3813722	C	T	8923.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr10	116075228	rs694883	A	G	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	116075271	rs377755078	T	TCC	3019.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=41.94;SOR=1.394;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	116079505	rs10885547	G	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	116085784	rs74928179	C	CCCG	10669.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	116091555	rs10787524	T	C	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	116100320	rs4752395	T	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	116203906	rs72826956	A	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=29.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	116203911	.	GAA	G	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=-0.623;QD=5.62;ReadPosRankSum=2.031;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr10	116203974	rs10160093	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	116205267	rs6585279	C	T	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	116209970	rs11384652	T	TA	337.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=0.792;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr10	116211246	rs2145895	A	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	116222749	rs7920878	G	A	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	116225365	rs7899255	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	116228048	rs1815248	G	T	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	116233824	rs11814528	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	116251686	rs12784116	T	A	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	116251753	rs34507585	G	T	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	116304958	rs10885579	C	T	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	116304971	rs2483595	T	C	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	116307504	rs2247528	A	G	6838.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	116593175	rs11196939	C	T	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	116596071	rs17095662	A	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	116605103	rs2420069	A	G	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	116606173	rs3834423	C	CT	3079.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;MQ=60.27;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	116615045	rs3180654	T	C	7402.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr10	116621154	rs34064819	C	A	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	116622339	rs41284358	A	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	116659253	rs10885629	A	G	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	116719543	rs7099565	G	A	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	116730337	rs6585309	G	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	116853177	rs2484265	C	G	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	116856543	rs1264777	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	116931101	rs3086141	C	CTT	4364.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	117075175	rs1953758	G	A	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	117278988	rs6421370	G	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	117357169	rs11197326	G	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	117357264	rs11197327	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	117486910	rs2286631	T	G	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	117856379	rs66851912	TGCACAC	T	1008.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr10	117856386	rs376047022	GCACACGCA	G	105.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.58;MQRankSum=-0.661;QD=2.58;ReadPosRankSum=-0.461;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr10	117884950	rs2245020	G	A	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	117971016	rs7090693	T	C	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	117986207	rs7094346	G	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	118015007	.	G	GA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=5.267;QD=0.47;ReadPosRankSum=-0.736;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:157,31:0.16:188
chr10	118031376	rs2532691	C	A	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.651;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	118031619	rs2577360	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	118187399	rs10787669	T	G	185.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.48;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	118187405	rs10787670	T	C	218.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	118215150	rs34077637	C	CT	432.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;MQRankSum=0.442;QD=17.31;ReadPosRankSum=-1.154;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr10	118231360	rs10736251	G	A	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	118231363	rs1897519	A	G	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	118231406	rs10749217	A	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	118313116	rs2915749	T	C	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	118313265	rs2915748	T	C	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	118357490	rs2915764	C	T	8396.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr10	118359548	rs3816355	T	C	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	118363642	rs3010501	T	C	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	118364818	rs2915754	G	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	118364842	rs2915753	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	118368469	rs111591175	AAAACC	A	6772.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=43.14;SOR=1.798;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	118380345	rs12415178	C	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	118380511	rs3010502	A	G	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	118383463	rs56189579	A	AG	7757.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	118383703	rs2286776	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	118386325	rs9787637	C	A	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr10	118387137	rs7092580	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	118387148	rs12768167	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	118387152	rs12768516	G	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	118387282	rs11544712	A	G	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	118391063	rs10885995	C	A	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	118396277	rs112820043	G	GT	1527.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr10	118396278	rs11197776	G	T	3447.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	118404437	rs11197780	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	118436068	rs2166634	G	T	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	118451699	rs740595	T	C	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	118451810	rs733216	A	G	8323.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	118452044	rs2240711	G	T	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	118452099	rs2240710	C	G	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	118466662	.	GCGCA	G	854.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.85;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	118501765	rs3095121	A	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	118620459	rs11197835	A	C	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	118620732	rs56177931	TAA	T	617.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.92;QD=25.74;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr10	118628036	rs1637571	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	118633548	rs1637574	A	G	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	118643670	rs2257791	G	A	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	118646129	rs2531685	G	C	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	118667346	rs2531690	A	C	11800.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr10	118708315	rs10595325	GAGA	G	1597.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	119001151	rs2619094	A	C	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	119013080	rs2256299	T	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	119014023	rs2072362	C	T	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	119014931	rs363420	C	T	10055.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	119014948	rs363343	C	A	9772.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	119026401	rs363266	T	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	119026566	rs363227	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	119027123	rs363228	C	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	119027411	rs363271	G	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	119029515	rs363230	C	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	119029744	rs363272	G	A	8309.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	119042761	rs363293	C	T	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	119307524	rs2240776	T	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	119768551	rs7923321	C	T	8706.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr10	119793629	rs2928118	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	120070427	rs4751651	G	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	120070709	rs3213691	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	120070843	rs34120011	G	GA	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	120081948	rs853911	C	T	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	120095171	.	A	AC	136.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr10	120353910	rs1613448	T	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	120354818	rs3740551	C	T	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	120460715	rs2274314	G	T	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	120803435	rs565922	C	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	120803788	rs658352	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.78;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	120810623	rs669964	A	C	5555.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	120817450	rs10886375	A	G	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	120818609	rs6585524	C	T	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	120820224	rs3740555	C	A	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	120828969	rs7908387	A	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	120832872	rs1397616	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	120864868	rs1511033	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	120865187	rs11198775	T	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	120883117	.	C	CT	618.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=6.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.006;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:98,67:0.41:165
chr10	120889022	rs3802739	T	C	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	120896027	rs11198799	G	A	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	120905940	.	CGTGTGT	C,CGT	3106.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=134;set=Intersection	GT:AF:DP	1/2:0.21,0.78:82
chr10	120905976	rs33947324	C	CGT	3108.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr10	120917269	rs2420494	A	T	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	120917445	rs2275111	G	A	11343.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr10	120919179	rs3740558	G	A	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	120919246	rs2181118	T	C	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	120920588	rs10749291	T	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	120923552	rs368539311	CA	C	48.82	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.44;QD=8.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	120923780	rs35023478	C	CTT	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=1.157;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr10	120924874	rs933092	G	C	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	120928938	rs2271362	C	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	120932159	.	C	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=1.013;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:94,33:0.26:127
chr10	120933324	rs3758609	G	A	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	121093160	rs10886461	A	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	121140511	rs4751714	A	G	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	121140534	rs2275037	C	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	121184780	.	T	TACACACACACAC	255.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.69;QD=51.15;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	121190113	rs915120	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	121199189	rs2245364	T	C	10516.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr10	121199437	rs915116	T	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	121201616	rs2275043	C	T	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	121287019	rs3009921	G	A	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	121338401	rs4752334	T	A	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.95;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	121347839	rs146020828	TTTTC	T	691.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:3,37:0.93:40
chr10	121429256	rs2240777	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	121435955	rs196294	A	C	4919.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	121436068	rs3858339	T	G	8365.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	121436286	rs3858340	C	T	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	121436362	rs196295	A	G	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	121551581	rs2289306	A	C	10359.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr10	121557940	rs35547475	CTT	C	671.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;MQ=60.67;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	121571507	rs3781503	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	121582556	rs2289307	T	C	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	121586882	rs3188055	A	G	12557.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	121618787	.	T	TAC	103	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr10	121675238	.	C	CT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=4.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.313;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:93,24:0.21:117
chr10	121717932	rs11199132	G	A	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	121717956	rs34665773	GT	G	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:4,87:0.96:91
chr10	121718112	rs11199134	C	T	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	122216790	rs10886691	A	T	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	122618148	rs2241846	G	C	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	122619466	rs10563638	TACAC	T	2750.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	122622121	rs3816173	A	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	122624679	rs10886789	G	A	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	122626038	rs2289335	C	T	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	122638073	rs1992274	T	A	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	122640168	rs11453234	C	CA	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	122640243	rs4751805	T	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	122643597	rs4752469	C	A	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	122643699	rs4752470	G	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	122645376	rs7899928	A	T	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	122646113	rs7079527	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	122646126	rs7079781	G	A	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	122646160	rs11395714	G	GA	2589.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:3,114:0.97:117
chr10	122646379	rs7079830	A	G	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	122648750	rs141904743	T	TTTTTGTTTTG	2032.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	122659490	rs2289336	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	122660701	rs11199635	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	122663585	rs1652727	G	A	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	122664388	rs10886798	C	T	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	122664694	rs10788127	G	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	122664967	rs1866516	C	T	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	122665285	rs1652726	A	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	122665310	rs3740306	T	A	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	122665459	rs3740307	C	G	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	123239112	rs1047057	G	A	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	123243197	rs2278202	G	A	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	123246732	rs148450955	TTTCTAAGGCCAGCTCCTGCACC	T	940.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	123247037	rs2981461	C	T	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	123247044	rs2981460	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	123277742	rs2420942	C	T	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	123279745	rs2981448	C	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	123298158	rs1047100	T	C	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	123596254	rs4237536	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	123673206	rs11200251	C	T	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	123673339	rs10749435	T	C	11682.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr10	123681962	rs10887023	T	C	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	123719835	rs10887033	T	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	123721624	rs374541666	TAA	T	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.000;QD=13.95;ReadPosRankSum=1.981;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr10	123724701	rs34074742	AC	A	3231.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	123724705	rs11351821	G	A	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	123724767	rs4752626	T	G	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	123730685	rs371483590	T	TA,TAA	866.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;QD=24.76;SOR=1.885;set=HC	GT:AD:AF:DP	1/2:0,11,24:0.31,0.69:35
chr10	123781339	rs2461221	A	G	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	123792487	rs5788528	A	AAAC	1131.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.92;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	123792527	rs11361502	AC	A	1640.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.97;QD=29.30;SOR=2.221;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	123842065	rs2459103	A	G	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.78;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	123845322	rs7073433	T	C	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	123847870	rs11442094	A	AT	223.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	123903133	rs12765679	G	A	8914.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr10	123976391	rs10444046	C	A	10002.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr10	123984442	rs2281671	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	123986118	rs34932234	TA	T	740.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=0.038;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:40,54:0.57:94
chr10	123986119	rs115729220	A	T	148.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.165;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr10	123996976	rs2295879	G	A	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	124001539	rs11200496	G	C	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	124008927	rs2273794	T	C	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	124008959	rs2273795	G	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	124013604	rs3763763	C	A	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr10	124036226	rs7086403	T	C	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	124036494	rs7090214	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	124043629	rs7098436	T	C	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	124066652	rs7082865	G	A	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	124089036	rs2421013	G	A	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	124091855	rs5788544	A	AG	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	124091921	rs4627016	C	T	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	124094283	rs10788282	C	T	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	124095982	rs3817280	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	124096035	rs3817281	T	C	12666.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr10	124096041	rs1129973	T	C	12762.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=1.155;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr10	124096061	rs1048347	A	C	8626.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr10	124096160	rs10510108	A	G	7209.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	124096209	rs3817284	C	T	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	124096306	rs3817285	T	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	124152936	rs3838776	G	GA	883.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	124159835	rs9988734	A	G	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	124175273	rs4751892	G	A	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	124175588	rs34532774	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	124183732	rs4405249	T	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	124186367	rs2292625	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	124189010	rs111356428	TTG	T	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr10	124271589	rs2672586	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	124320194	rs2981745	T	C	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	124325409	rs3019515	T	G	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	124325569	rs3019516	A	G	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	124325631	rs2981768	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	124329580	rs11524819	C	A	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=1.546;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	124329583	rs11524820	G	A	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	124329672	rs3740220	TC	CT	9865.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	124329710	rs11523871	C	A	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	124329746	rs3740222	A	T	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	124329801	rs3740223	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	124330240	rs2981790	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	124330252	rs2981791	A	G	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	124330368	rs41296139	G	T	10135.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr10	124330427	rs3013236	C	T	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	124331867	rs7084792	C	T	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr10	124331944	rs2277229	C	T	7308.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	124331957	rs2277230	T	C	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.08;SOR=1.319;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	124331963	rs2277231	A	G	3984.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.87;ReadPosRankSum=0.507;SOR=1.593;set=HC	GT:AD:AF:DP	1/1:2,141:0.99:143
chr10	124332035	rs2277232	T	C	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	124333308	rs2277235	G	A	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	124335866	rs1985025	C	T	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	124389296	rs3013177	C	G	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	124396888	rs141872132	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	124399467	rs2261655	C	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	124399985	rs2261660	G	T	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	124402677	rs1052715	A	G	10089.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr10	124402944	rs8441	G	A	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	124436530	rs3019500	G	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	124457452	rs2947594	C	T	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	124594153	rs11248321	A	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	124595874	rs11365591	GA	G	467.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.544;QD=15.09;ReadPosRankSum=1.158;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr10	124610027	rs1891110	G	A	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	124648150	rs10902838	A	G	10993.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr10	124648285	rs10902839	G	A	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	124648367	.	CT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.493;QD=3.12;ReadPosRankSum=-0.917;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr10	124653996	rs12255784	T	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	124654345	rs35248586	CT	C	1134.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:6,62:0.91:68
chr10	124697198	rs10794580	G	A	8487.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	124711632	rs9804347	T	A	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	124742586	rs3736585	G	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	124742683	rs3736584	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	124742792	rs3736583	G	A	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	124742895	rs3736582	G	C	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	124746801	rs7096614	T	G	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	124800853	rs1140591	C	T	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	124810704	.	TAAAA	T	202.74	.	AC=1;AF=0.500;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.34;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	124810746	rs3833736	C	CT	84.87	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	124812487	rs2421166	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	124812685	rs11307362	AT	A	1602.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:10,91:0.90:101
chr10	124924484	rs34736387	CT	C	1278.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:3,64:0.96:67
chr10	125425822	rs10902974	T	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	125426565	rs4980313	G	C	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr10	125506302	rs7088479	T	C	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	125521533	rs10794566	G	A	7647.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	125521590	rs10794567	G	A	7935.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr10	125521721	rs10751743	G	A	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	125521751	rs10794568	C	G	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	125526689	rs1896392	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	125527964	rs1219727	G	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	125528007	rs1219726	A	G	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	125528297	rs1219724	T	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	125557769	rs11356678	GA	G	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=1.064;QD=10.69;ReadPosRankSum=2.233;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr10	125602948	rs5788632	A	AT	870.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.130;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:34,75:0.69:109
chr10	125622250	rs11299200	CA	C	7894.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=34.63;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	125673492	rs7893288	A	G	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	125673547	rs4329614	T	G	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	125780752	rs5788645	CG	C	2729.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=9.720;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.40;ReadPosRankSum=1.156;SOR=4.284;set=HC	GT:AD:AF:DP	1/1:1,74:0.99:75
chr10	125780759	rs4072194	G	C	2828.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=18.355;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.81;ReadPosRankSum=1.031;SOR=4.104;set=HC	GT:AD:AF:DP	1/1:2,77:0.97:79
chr10	125780958	rs9422312	C	T	7159.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	126086730	rs2459217	G	A	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	126089434	rs11461	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	126089656	rs2459215	T	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	126089703	rs2491158	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	126090430	rs17619406	A	G	10041.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr10	126090465	rs17681531	T	A	6894.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	126090562	rs2491159	T	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	126093991	rs9422807	T	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	126150338	rs2459213	C	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	126150388	rs2491156	C	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	126172863	rs6597801	A	G	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	126185451	rs10794134	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	126185618	rs3824810	A	G	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	126185707	rs3824809	C	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	126312289	rs4962672	G	A	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	126395123	rs7897256	T	C	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	126454248	rs11245358	G	C	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	126471382	.	C	CA	51	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.9965;HP=13;HapScore=2;MGOF=9;MMLQ=23;MQ=60.0;NF=3;NR=1;PP=51;QD=14.0;SC=AACTCTGTCTCAAAAAAAAAA;SbPval=0.8;Source=Platypus;TC=6;TCF=4;TCR=2;TR=4;WE=126471390;WS=126471372;set=Platypus	GT:AD:AF:DP	1/0:2,4:0.67:6
chr10	126480233	rs2277264	C	T	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	126480556	rs10901821	T	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	126505062	rs11451694	T	TA	652.82	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:5,32:0.86:37
chr10	126508148	rs11597901	A	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	126517243	.	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.480;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr10	126629167	rs143159305	A	AT	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr10	126629204	rs7074163	G	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	126660781	rs3802700	A	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	126662451	rs3740534	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	126670356	rs17152433	G	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	126671673	rs2241541	T	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	126686827	rs1982225	T	A	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	126692193	rs750599	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	126715154	rs3781412	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	126715629	rs3781409	C	T	7807.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr10	126727353	rs2289431	C	A	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	127265374	rs11244568	T	C	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	127426430	rs3740181	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	127426588	rs3740180	C	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	127426835	rs3943225	G	T	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.629;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	127436411	rs2296832	T	C	9050.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	127441439	rs17153510	G	A	8860.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr10	127441573	rs10751530	G	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	127445408	rs4962313	G	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	127483396	rs112839143	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.349;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr10	127504660	rs2366044	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	127584978	rs5006357	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr10	127585015	rs79042596	G	T	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-7.310;QD=8.12;ReadPosRankSum=2.562;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:112,37:0.25:149
chr10	127585035	rs113524015	C	G	1273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-8.458;QD=7.41;ReadPosRankSum=0.837;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:131,41:0.24:172
chr10	127585040	rs5006358	G	A	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=7.942;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-9.108;QD=7.33;ReadPosRankSum=0.195;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:133,44:0.25:177
chr10	127585090	rs74635147	C	A	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.932;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=3.946;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-16.371;QD=6.64;ReadPosRankSum=-0.343;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:236,66:0.22:302
chr10	127585097	rs78188902	T	C	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.174;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=4.808;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-16.486;QD=6.69;ReadPosRankSum=0.610;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:240,66:0.22:306
chr10	127585099	rs79920605	A	G	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.999;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=4.808;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-16.649;QD=6.71;ReadPosRankSum=0.944;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:240,66:0.22:306
chr10	127585112	rs72832617	T	C	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.046;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-16.357;QD=6.82;ReadPosRankSum=2.314;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:240,67:0.22:307
chr10	127585120	rs80288044	G	C	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.150;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=3.122;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-15.631;QD=6.99;ReadPosRankSum=2.678;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:226,67:0.23:293
chr10	127585150	rs74162870	C	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:177,61:0.26:238
chr10	127585179	rs74162871	G	C	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:137,67:0.33:204
chr10	127585237	rs5013589	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=8.136;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-3.092;QD=3.12;ReadPosRankSum=-0.811;SOR=0.167;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr10	127585260	rs4986789	G	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.095;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=16.375;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-3.261;QD=4.43;ReadPosRankSum=1.134;SOR=0.066;set=HC	GT:AD:AF:DP	0/1:64,24:0.27:88
chr10	127585288	rs5013590	C	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=13.945;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-2.000;QD=6.56;ReadPosRankSum=0.195;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr10	127585307	rs74579856	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-1.657;QD=4.63;ReadPosRankSum=0.448;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr10	127585360	rs78190003	C	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.545;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.527;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-2.863;QD=6.57;ReadPosRankSum=-1.645;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr10	127585363	rs74162872	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-3.200;QD=6.86;ReadPosRankSum=-1.154;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr10	127693432	rs2138283	C	T	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	127730972	rs150225509	CTGTG	C	2213.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	127730991	rs45535336	A	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	127731012	rs11244780	T	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	127731535	rs7911793	TG	CA	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	127734486	rs1710312	C	T	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	127734513	rs1710313	A	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr10	127738280	rs11406158	A	AT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.337;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr10	127755544	rs1278280	T	G	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	127829012	rs1551678	C	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	127967533	rs117627830	G	T	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	128019025	rs3740199	C	G	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	128192985	rs11245007	C	T	7719.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	128202435	rs1436803	T	C	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	128209769	rs2099552	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	128209797	rs2099553	C	T	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	128209959	rs4962342	G	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	128335010	rs2842150	C	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	128335225	rs2842149	T	C	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	128810685	rs1890872	T	C	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	128830592	rs9418802	C	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	128836112	rs56038046	CT	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=2.213;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	128836214	rs7085407	G	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	128840842	rs880272	A	G	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	128850789	rs72279241	CA	C	124.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.671;QD=10.38;ReadPosRankSum=-1.078;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr10	128850841	rs9418817	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	128859743	rs4751523	C	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	128923954	rs1186355	A	C	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	128925761	rs1153016	A	T	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.31;SOR=2.004;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	128926013	rs1060561	A	G	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	128952219	rs34225417	C	T	7690.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr10	128952265	rs7068954	A	G	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	128974220	rs11594560	G	A	10103.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr10	129046407	rs3740013	T	C	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	129183015	rs878562	T	G	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	129200964	rs11017876	G	A	10103.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr10	129202729	rs2296630	G	T	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	129207564	rs12774391	C	T	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr10	129208894	rs6482874	A	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	129208965	rs11017944	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	129209213	rs11017952	C	A	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	129209237	rs10830001	G	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	129209256	rs11017953	C	T	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	129213631	rs3736939	A	G	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr10	129217983	.	C	G	3223.77	.	AC=2;AF=1.00;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	129237580	rs2275052	C	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	129249662	rs2229603	G	A	9113.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr10	129249701	rs2229606	C	G	10710.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr10	129534478	rs147236104	A	AGCGCGGC	186.87	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	129534679	rs4751501	T	C	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	129534739	rs4751502	C	G	6911.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	129534864	rs4751503	A	C	13663.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:1,510:1.00:511
chr10	129536642	rs7085541	G	A	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	129536648	rs7085544	G	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.96;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	129785814	rs11817943	A	T	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	129834422	rs10764738	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	129845547	rs4262642	A	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	129845903	rs7912703	C	T	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	129846010	rs7911904	G	A	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	129904917	rs1894410	G	A	7880.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	129907741	rs2065718	G	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	131265394	.	T	C	949.77	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	131265665	rs16906255	T	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	131334789	rs10734087	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	131639306	rs71481016	T	TCC	313.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	131641361	rs35210769	T	TG	1649.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.62;ReadPosRankSum=-1.235;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:2,65:0.97:67
chr10	131755652	rs36101167	A	AT,ATT	2395.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.668;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.769;SOR=1.331;set=HC	GT:AD:AF:DP	1/2:24,102,37:0.63,0.23:163
chr10	131760352	rs573370	A	G	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	133107496	rs61732111	C	T	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	133607892	rs4897739	T	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	133607904	rs4897781	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	133607937	rs4897782	G	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	133607947	rs4897740	T	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.20;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	133608210	rs4897741	A	G	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	133608237	rs4897783	G	A	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	133608291	rs4897742	TT	GG	8053.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	133608495	rs4897744	A	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	133955569	rs5789117	C	CCG	3079.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr10	133958541	rs2637627	C	T	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	133963042	rs112941338	GC	G	5202.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr10	133963058	.	T	TCCCCCGCCCCACCCCCTCCCTG	4329.73	.	AC=2;AF=1.00;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	133963077	.	TCC	CCT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=3;HapScore=1;MGOF=39;MMLQ=28;MQ=58.9;NF=0;NR=68;PP=2947;QD=20;SC=CCACCCCCTCTCCGCCCCCGC;SbPval=1.0;Source=Platypus;TC=75;TCF=0;TCR=75;TR=68;WE=133963087;WS=133963067;set=Platypus	GT:AD:AF:DP	1/1:7,68:0.91:75
chr10	133963096	.	C	CT	2062	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=5;HapScore=1;MGOF=90;MMLQ=24;MQ=57.71;NF=0;NR=44;PP=2062;QD=47.4545454545;SC=GCCCCACCCCCCTCCGCCCCC;SbPval=1.0;Source=Platypus;TC=44;TCF=0;TCR=44;TR=44;WE=133963104;WS=133963086;set=Platypus	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	133963466	rs9419380	A	G	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	133966552	rs56317371	G	A	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr10	133967539	rs7082416	C	G	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	133967555	rs77155409	G	C	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	133967584	rs138366344	C	CCAG	2901.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	133967593	rs7906747	C	T	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	133978080	rs77822814	G	A	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	133981422	rs2637650	C	T	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	134000501	.	CCCCGCCCG	C	4115.73	.	AC=2;AF=1.00;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	134010224	rs1552681	C	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	134010435	rs78726081	AG	A	13257.73	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr10	134013906	rs56326856	C	T	16722.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr10	134013990	rs2247705	G	A	18505.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr10	134014661	rs76037184	G	T	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	134017295	rs12313	A	G	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	134018447	rs146929318	G	GGCC	9123.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	134018483	rs114235518	G	A	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	134021506	rs79220014	G	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	134021632	.	G	A	899.77	.	AC=1;AF=0.500;AN=2;DP=162;set=Intersection	GT:AD:AF:DP	0/1:112,50:0.31:162
chr10	134021740	rs923659	G	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	134021810	rs923660	T	C	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	134022455	rs41306840	G	A	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	134036053	rs2814197	G	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	134036057	rs2637635	C	T	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	134036073	rs2814196	G	A	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	134036193	rs2818401	A	G	6778.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	134036596	rs1994688	G	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	134038031	rs45527342	G	C	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	134038715	rs902629	A	G	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	134059616	rs3814609	G	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	134062574	rs4880361	G	A	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	134137638	rs11146329	G	A	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	134145314	rs11146335	A	G	5853.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	134161633	rs2474328	A	G	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr10	134165291	rs2261222	C	G	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	134174781	rs76200325	G	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	134180248	rs10870299	C	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	134210667	.	CCGGCGG	C	802.73	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	134210943	rs188071015	T	G	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	134218269	rs11146363	C	T	6958.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	134218296	rs10747057	C	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:12,223:0.95:235
chr10	134218431	.	C	T	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=1.139;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:243,98:0.29:341
chr10	134237240	rs1881746	T	C	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	134237249	rs150298334	C	CTGTG	3183.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;QD=43.61;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	134237276	rs1574449	T	G	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=37.34;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	134237425	rs1574448	A	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	134239228	rs12775406	T	C	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.64;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	134598628	rs2804003	A	G	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	134599389	rs201425867	T	G	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	134622408	rs2767434	T	C	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	134622507	rs2767431	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	134623822	.	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.149;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-1.481;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:72,15:0.17:87
chr10	134623959	rs2254419	T	C	8294.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr10	134626453	rs3750586	C	T	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	134627593	rs11146529	G	A	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	134627882	rs7070307	G	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	134726108	.	CCT	C	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-1.190;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr10	134750604	rs10870211	C	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	134755298	rs4880292	C	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	134884516	rs4271312	G	A	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	134884546	rs4576736	A	G	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	134884595	rs4271313	G	A	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	134884610	rs4486541	C	G	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	134884755	rs11101751	C	A	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	134885677	rs7069085	A	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	134885700	rs7094939	T	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	134886618	rs4838684	G	C	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	134895530	rs34883766	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	134898594	rs4838694	A	G	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	134902314	rs10745302	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	134902396	rs10776692	C	G	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	134902396	.	CGC	GGT	1917	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=1;MGOF=9;MMLQ=19;MQ=60.0;NF=37;NR=16;PP=1917;QD=37.1786391483;SC=CTCACGCTTCCGCAACTTTGC;SbPval=0.58;Source=Platypus;TC=58;TCF=40;TCR=18;TR=53;WE=134902406;WS=134902386;set=Platypus	GT:AD:AF:DP	1/1:5,53:0.91:58
chr10	134902398	rs10776693	C	T	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.263;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	134906343	.	G	GGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAA	685.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;QD=76.19;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	134912314	rs11101916	G	A	8131.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr10	134915993	rs7905581	G	C	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	134916121	rs7918862	T	A	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	134942166	rs2806452	A	G	10342.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr10	134973995	rs71503783	G	A	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	134974187	rs56406605	A	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	134981690	rs2998152	T	C	9201.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr10	134981837	rs2998151	T	C	10219.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr10	134981942	rs3008303	C	T	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	134999364	.	T	TGGGAGGGGAGGGGTGGGAGGAGAGGGGAGGGGTGGGAGGAGAGGGGAGGGGC	139.14	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=139.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr10	134999602	rs3008393	G	C	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	135010662	rs6537590	C	T	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	135020315	rs3008375	T	C	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	135038088	rs11597218	C	T	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	135043802	rs7092433	C	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	135061112	rs12355840	C	T	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	135076523	rs2995300	C	A	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	135076596	rs2230576	T	C	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	135076758	rs3008318	T	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	135076903	rs3121298	A	G	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	135077121	rs3216041	C	CGTCAGCCCCGTGGGGAGGCCGTGCCACT	812.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr10	135077311	rs2995301	C	G	6953.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	135081684	rs2995309	T	C	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	135081754	rs11101672	G	C	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	135082346	rs2275720	A	G	16272.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr10	135082810	rs2995310	C	T	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	135082874	rs2995311	G	A	6497.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	135083164	rs2275719	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	135083812	rs885023	C	A	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	135084232	rs5789159	C	CAGA	6487.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	135084322	rs3008321	A	G	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	135084601	rs2995314	T	C	10601.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr10	135085321	rs1131720	C	T	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	135085426	rs1131719	A	G	11928.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr10	135085754	rs1131718	G	A	15190.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr10	135086380	rs3008324	C	T	8851.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr10	135087521	rs3008326	G	A	8479.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	135087746	.	G	A	2283.77	.	AC=2;AF=1.00;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	135089035	rs2275725	A	G	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	135090183	rs2995317	A	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	135095854	rs201356514	G	A	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	135095928	.	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	135096784	rs2995325	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	135097224	rs56403249	T	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	135097227	.	CGCA	C	2185.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	135097232	.	T	TCG	2191.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	135097434	rs2995326	A	G	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	135098672	rs3008334	G	A	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr10	135098830	rs3008335	T	C	17442.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	135098845	rs2995327	C	T	10648.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,386:0.99:388
chr10	135103311	rs141370078	C	CGCCCGCTGCGCCGCGGACGCCAAGTCCCT	2364.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	135105962	.	CCCCGTGTCCCTCCGTGT	C	2975	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=3;HapScore=1;MGOF=51;MMLQ=22;MQ=59.46;NF=35;NR=49;PP=2975;QD=20;SC=CCCTCCGTGTCCCCGTGTCCC;SbPval=0.6;Source=Platypus;TC=89;TCF=38;TCR=51;TR=84;WE=135105999;WS=135105951;set=Platypus	GT:AD:AF:DP	1/0:5,84:0.94:89
chr10	135105991	.	G	A	2962	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=3;HapScore=1;MGOF=51;MMLQ=18;MQ=61.49;NF=101;NR=57;PP=2962;QD=20;SC=CCCGTGTCCCGGGGAGCCCTA;SbPval=0.49;Source=Platypus;TC=160;TCF=103;TCR=57;TR=158;WE=135105999;WS=135105951;set=Platypus	GT:AD:AF:DP	1/1:2,158:0.99:160
chr10	135141572	rs2298122	G	T	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	135160950	rs4838721	C	T	11509.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr10	135165790	rs4369319	A	G	9900.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr10	135171364	rs1891372	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	135178087	rs10745294	A	C	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	135179458	rs6537598	G	C	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	135180430	rs2230261	A	G	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	135184126	rs1049951	G	A	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	135186806	rs10466126	A	G	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	135192762	rs12250188	C	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	135194890	rs10745295	A	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	135197419	rs4240520	G	A	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	135197650	rs141232448	C	T	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	135202594	rs10776679	T	C	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	135204799	rs6537600	C	T	9497.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	135204950	rs1046175	C	G	5599.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	135205009	rs1046178	C	G	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	135207936	rs10160083	T	C	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	135209105	rs4838742	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	135211892	rs2252852	A	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	135215756	rs145673810	CGGGGCT	C	7342.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=44.23;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	135233541	rs2255246	A	G	12373.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr10	135237003	rs4077586	G	A	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	135237060	rs2480253	A	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	135267445	rs2253522	T	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	135267738	rs2253529	T	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	135269955	rs11101759	C	T	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	135271764	rs115558068	G	A	8973.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	135271789	rs2480245	C	T	9969.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	135272546	rs184423411	G	A	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	135272947	rs2257044	C	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	135272947	.	CC	AG	529	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=12;NR=13;PP=529;QD=23.2987149945;SC=GGTCCTGGGTCCCTCCCGCTG;SbPval=0.46;Source=Platypus;TC=27;TCF=14;TCR=13;TR=25;WE=135272956;WS=135272937;set=Platypus	GT:AD:AF:DP	1/1:2,25:0.93:27
chr10	135272948	rs2257045	C	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.02;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	135273463	rs731947	C	G	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	135278193	rs2492654	A	G	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	135279283	rs2243812	T	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	135279810	rs2243909	T	G	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	135280765	rs2246634	C	T	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	135340866	rs11445593	T	TC	1831.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	135347397	rs915909	T	C	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	135347533	rs943976	A	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	135350490	rs147973606	A	AGATGGGTGGAT	1954.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	135351137	rs2070676	G	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	135351174	rs2070677	T	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	135351362	rs2515641	T	C	7097.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	135352153	rs2249694	A	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	135352168	rs2249695	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	135352509	rs2480257	T	A	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	135352514	rs2480256	A	G	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.51;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	135369054	rs3020514	A	G	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	135370060	rs2987791	G	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	135371466	rs2987792	T	C	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	135381215	rs3020499	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=24.07;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	135381276	rs3020500	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	135381592	rs3020501	C	G	8265.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	135381623	rs3020502	T	C	11511.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr10	135381766	rs3020503	C	T	9724.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr10	135381927	rs2987800	T	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	135438888	rs150376644	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=-7.915;QD=1.26;ReadPosRankSum=-1.741;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:440,84:0.16:524
chr10	135438929	rs201901202	T	G	2448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-13.230;QD=3.62;ReadPosRankSum=3.678;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:574,103:0.15:677
chr10	135438951	rs200483318	G	A	2394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.563;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-16.452;QD=3.36;ReadPosRankSum=4.106;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:610,102:0.14:712
chr10	135438955	rs201563622	C	T	2349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-17.062;QD=3.25;ReadPosRankSum=4.069;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:622,102:0.14:724
chr10	135438967	rs145018822	C	T	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.790;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-19.431;QD=3.26;ReadPosRankSum=2.539;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:603,97:0.14:700
chr10	135438977	rs79631365	G	A	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.791;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-22.896;QD=3.00;ReadPosRankSum=0.583;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:600,92:0.13:692
chr11	193096	rs2280539	T	C	5904.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	193112	rs7951297	C	T	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:93,114:0.55:207
chr11	193194	rs2686896	T	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.455;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:44,42:0.49:86
chr11	193863	rs2294081	T	C	4731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=0.943;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:117,125:0.52:242
chr11	193863	.	TAT	CAG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=52;NR=53;PP=2944;QD=20;SC=TCAAGTCCTGTATAGATGGCC;SbPval=0.45;Source=Platypus;TC=213;TCF=110;TCR=103;TR=105;WE=193873;WS=193853;set=Platypus	GT:AD:AF:DP	1/0:108,105:0.49:213
chr11	193865	rs2686894	T	G	4731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.532;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.14;ReadPosRankSum=1.929;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:115,120:0.51:235
chr11	194638	.	CGGG	C	829.73	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr11	197557	rs7103852	A	G	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	207359	rs375304678	C	CGGCCACAGCCGCCTCAGACGT	1779.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr11	207400	rs71487219	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	207462	rs11245998	A	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	209002	rs2177173	A	G	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	214421	rs3216	G	C	13415.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr11	219089	rs511744	T	C	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	223832	rs144507767	C	A	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	223854	rs201048317	C	T	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=49.11;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	223856	.	A	ACAAACCTCCAGGGAGGTCCCAAGGATGAG	3832.73	.	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=45.63;SOR=1.275;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	223976	.	ACTCCTCCCTGCACAGGCCTGCCGACAGCCCATGAGATGACTCCTGTACCCCTCCCTTCCCCTGCCCTCCAGC	A	2046.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=6.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:54,81:0.60:135
chr11	224048	.	C	A	2965	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=1;HapScore=1;MGOF=9;MMLQ=28;MQ=59.05;NF=72;NR=99;PP=2965;QD=20;SC=TGCCCTCCAGCCTCCTCCCTG;SbPval=0.53;Source=Platypus;TC=172;TCF=72;TCR=100;TR=171;WE=224056;WS=224038;set=Platypus	GT:AD:AF:DP	1/1:1,171:0.99:172
chr11	233067	rs11246020	C	T	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	233212	rs11555236	C	A	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	233298	rs12365010	T	G	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	235894	rs9795476	T	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	236343	rs7118852	A	G	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	236370	.	C	CCGGCGCCCCGCCCG	1294.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=43.16;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	236871	rs2272563	T	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	237087	rs1045288	A	G	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	243987	rs6598060	G	A	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	244106	rs10902112	A	G	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	244108	rs7107362	A	G	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	244115	rs7128044	G	A	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	244129	rs7116130	C	T	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	244141	rs7128029	G	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	244167	rs1128320	C	T	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	244171	rs1128321	T	C	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	244197	rs1128322	T	C	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	244414	rs2272565	C	T	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	244490	rs3830667	ATACCTTTTAG	A	9911.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	244552	rs2272566	A	G	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	247200	rs3830001	G	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	250877	rs12793187	C	T	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	252318	rs6598055	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	280221	rs6421985	A	C	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	280673	rs12807092	C	T	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	280816	rs7482965	AT	TC	10473.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	284093	rs9734280	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	284257	rs11246050	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.341;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:240,45:0.16:285
chr11	284538	rs6598047	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=0.485;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:303,58:0.16:361
chr11	290816	rs10902120	A	G	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr11	292798	rs11602423	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	293001	rs35259273	A	AG	5919.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	294512	rs149098966	A	ACCCCAGGCTGTCCCTCACCCCCAGACTGCCCTCTCAC	3546.84	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:13,81:0.86:94
chr11	294516	.	C	CAGGCTGTCCCTCACCCCCAGACTGCCCTCTCACCCCA	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=64.05;MQRankSum=2.231;QD=0.94;ReadPosRankSum=0.951;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:167,13:0.07:180
chr11	308065	rs9704108	T	C	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-2.033;QD=2.36;ReadPosRankSum=-0.043;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr11	308178	rs1058873	T	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-1.338;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:362,62:0.15:424
chr11	308426	rs1058964	G	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.273;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-3.986;QD=0.52;ReadPosRankSum=1.165;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:184,25:0.12:209
chr11	308576	rs909097	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.771;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=0.730;QD=0.93;ReadPosRankSum=-1.201;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:99,15:0.13:114
chr11	308716	rs909098	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=47.23;MQRankSum=-3.918;QD=1.90;ReadPosRankSum=2.268;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:162,34:0.17:196
chr11	309127	rs1059091	A	G	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.520;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:349,76:0.18:425
chr11	314207	rs9667990	C	G	19046.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,698:1.00:698
chr11	372095	rs72847391	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-1.271;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chr11	372225	rs79491678	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.119;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:197,45:0.19:242
chr11	373317	rs72847393	G	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.089;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:115,25:0.18:140
chr11	373408	rs376849299	AC	A	1982.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr11	375804	rs61876283	G	A	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=2.388;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:229,46:0.17:275
chr11	396701	rs11246147	C	T	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	396915	rs12419281	C	T	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	397331	rs200371913	G	C	5489.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:37,226:0.86:263
chr11	397706	rs9795298	T	C	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	397732	rs9795299	T	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	400109	rs8858	A	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	403001	.	ACCCGACCCGCTCAC	A	1426	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=4;HapScore=1;MGOF=73;MMLQ=24;MQ=58.19;NF=2;NR=3;PP=1426;QD=291.0;SC=CCCCACTCACACCCGACCCGC;SbPval=0.65;Source=Platypus;TC=5;TCF=2;TCR=3;TR=5;WE=403022;WS=402991;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	403030	.	CCCGACCCG	C	833.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.20;QD=36.25;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	403040	.	TCACCCC	T	834.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=32.11;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	403046	.	C	T	557	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=3;HapScore=1;MGOF=59;MMLQ=24;MQ=62.08;NF=13;NR=6;PP=557;QD=31.145853292;SC=CCGCTCACCCCGACCCCGCCG;SbPval=0.53;Source=Platypus;TC=20;TCF=14;TCR=6;TR=19;WE=403054;WS=403036;set=Platypus	GT:AD:AF:DP	1/1:1,19:0.95:20
chr11	403939	rs7479832	A	G	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	403980	rs11748	G	A	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	404317	rs1134578	C	T	10604.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	406043	rs7947	G	A	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	406473	rs3087588	A	C	7868.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	406483	rs3210908	T	C	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	407236	rs7395890	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	407366	.	T	TGGGATGGGGC	583.73	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	407708	rs6421977	A	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	409385	rs6421976	C	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	409720	rs6598024	T	G	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	409766	rs111715314	C	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.340;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:216,34:0.14:250
chr11	428385	rs10794323	A	G	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:25,99:0.80:124
chr11	428489	rs10794324	T	C	4482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=1.331;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:61,202:0.77:263
chr11	429659	rs7111432	C	T	10056.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:116,456:0.80:572
chr11	430339	rs113926353	C	G	4933.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:35,217:0.86:252
chr11	430456	rs11603743	A	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-0.684;QD=13.65;ReadPosRankSum=-1.432;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr11	431834	rs55914928	A	G	4329.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:37,200:0.84:237
chr11	433387	rs7395065	A	G	9763.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr11	433554	rs12576389	C	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:5,37:0.88:42
chr11	433568	rs7396813	G	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:5,46:0.90:51
chr11	433867	rs12575508	G	A	4839.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:39,214:0.85:253
chr11	433965	rs7396778	G	A	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:8,103:0.93:111
chr11	433995	rs7396776	G	A	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:7,89:0.93:96
chr11	460303	rs11821341	T	C	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	474033	rs72851118	C	T	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:26,164:0.86:190
chr11	479240	rs3216784	GC	G	2097.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr11	479245	rs2301169	C	T	2148.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.081;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.11;ReadPosRankSum=-1.603;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:11,52:0.83:63
chr11	479245	.	CG	TT	2459	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=12;NR=31;PP=2459;QD=58.4294854619;SC=ACACAGCCCTCGAGTGATGGG;SbPval=0.49;Source=Platypus;TC=56;TCF=15;TCR=41;TR=43;WE=479254;WS=479230;set=Platypus	GT:AD:AF:DP	0/1:13,43:0.77:56
chr11	479246	rs2301170	G	T	2148.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.11;ReadPosRankSum=-1.540;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:11,52:0.83:63
chr11	486826	rs55653405	C	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.85;QD=44.85;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	486835	rs55976759	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.94;QD=45.73;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	486843	rs56352613	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.53;QD=46.93;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	486855	rs55961417	T	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-0.819;QD=14.45;ReadPosRankSum=1.029;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr11	486874	rs55830538	T	C	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.369;QD=20.34;ReadPosRankSum=0.087;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:8,45:0.85:53
chr11	487666	rs112145905	C	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr11	488135	rs11820122	G	A	3842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.487;QD=34.01;ReadPosRankSum=-1.016;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:20,93:0.82:113
chr11	488140	rs11821959	C	T	3839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.490;QD=32.82;ReadPosRankSum=0.004;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:21,96:0.82:117
chr11	488389	rs11822000	C	A	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:19,107:0.85:126
chr11	489386	rs67492572	T	C	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:26,98:0.79:124
chr11	489537	rs61876336	C	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=1.166;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:368,63:0.15:431
chr11	489829	rs56005321	C	A	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:25,128:0.84:153
chr11	490035	rs61742833	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=1.926;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:309,56:0.15:365
chr11	494662	rs10540	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.293;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:96,20:0.17:116
chr11	494942	rs7983	G	C	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	495103	rs11246165	A	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	498383	rs11825121	C	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.033;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr11	498442	rs35811812	G	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.488;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=6.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.484;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:136,34:0.20:170
chr11	498976	rs35608427	T	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.490;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=15.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.850;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:466,74:0.14:540
chr11	499059	rs17584	C	T	8730.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:65,373:0.85:438
chr11	499288	rs71278581	T	TCTC	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=8.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.812;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr11	499547	rs61876345	A	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:31,134:0.81:165
chr11	499583	rs61876346	G	A	2909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=4.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.02;ReadPosRankSum=1.777;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:26,127:0.83:153
chr11	500056	rs12417451	G	A	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr11	502013	rs7930593	G	A	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	502129	rs71462090	ACTGGATGTCCAGGCT	A	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.486;QD=3.10;ReadPosRankSum=-0.272;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:134,22:0.14:156
chr11	502217	rs7944548	C	T	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	534242	rs12628	A	G	10437.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr11	534403	rs146677294	GCCCAGGCCCAGC	G	1715.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:4,42:0.91:46
chr11	549959	rs7942030	C	T	6090.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	550028	rs11246180	C	G	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=3.683;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	551235	rs35537971	G	A	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	551405	rs7396875	G	A	10058.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr11	552547	rs3740652	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	552756	rs12361381	T	C	6800.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	552787	rs12361383	T	C	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	552875	rs28575794	A	G	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	554047	rs12793222	G	A	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	554166	rs10902170	C	G	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	554214	rs10902171	G	C	8427.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	554299	rs10902172	C	G	9440.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr11	555182	.	G	GGGAGGGGCGGGGAGGAGAGC	285.74	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=71.44;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	555223	rs55731724	AC	A	508.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	556121	rs936467	G	A	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	556457	rs28407128	T	C	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	556521	rs28406183	C	G	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	556857	rs7938269	G	C	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	557342	rs936466	T	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	558165	rs79820513	T	G	8783.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:81,385:0.83:466
chr11	558884	rs2061586	C	T	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	559016	rs3943356	C	T	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	562437	rs11246189	G	A	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	582264	rs71022934	CT	C	171.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.535;QD=11.45;ReadPosRankSum=-1.634;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr11	587425	rs12800061	C	A	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	601785	rs2396545	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	606656	rs936470	G	C	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	606749	rs936469	G	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	607175	rs936468	G	A	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	609068	rs7928902	G	A	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	609353	rs11539530	G	A	22695.77	.	AC=2;AF=1.00;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	1/1:0,836:1.00:836
chr11	610277	rs11246212	T	C	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	611503	rs7941547	G	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	611531	rs12419618	G	A	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	611802	rs17155933	C	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-1.052;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:91,17:0.16:108
chr11	612843	rs10902178	T	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	612967	rs11246213	A	G	5892.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	613165	rs1051390	G	C	9088.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	613192	rs12422022	A	G	9223.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	613208	rs1131665	T	C	8407.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	613297	rs1061505	T	G	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	613666	.	GACA	G	619.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.13;ReadPosRankSum=-4.291;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr11	613670	.	GGATGTGAGTGACGGGGGTGGGCGGGGA	G	618.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.401;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.10;ReadPosRankSum=-2.676;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr11	613672	.	A	C	509	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=4;MGOF=51;MMLQ=28;MQ=58.23;NF=11;NR=0;PP=509;QD=49.4337465952;SC=CGGGGACAGGATGTGAGTGAC;SbPval=1.0;Source=Platypus;TC=18;TCF=18;TCR=0;TR=11;WE=613680;WS=613657;set=Platypus	GT:AD:AF:DP	1/0:7,11:0.61:18
chr11	613742	rs60870990	G	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	613757	rs59115876	A	G	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	614318	rs1061502	T	C	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	614864	rs1061501	C	T	16916.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr11	615010	rs12290989	GA	TT	9013.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	616970	rs1610161	A	T	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	617214	rs35600572	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	617221	rs34449380	T	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	617228	rs112006329	G	A	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.94;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	617378	rs61877856	C	T	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	617420	rs61877857	A	G	4382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.163;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=-1.140;SOR=0.353;set=HC	GT:AD:AF:DP	1/1:1,173:0.99:174
chr11	617519	rs34889521	A	G	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	617967	rs2740379	C	G	6147.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	618013	rs7108757	C	T	11723.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr11	619671	rs1124816	C	T	7870.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	621634	rs2740373	G	A	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:18,95:0.84:113
chr11	621795	rs12801890	G	A	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	626220	rs12280580	C	G	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	627517	rs112888889	C	T	4025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-1.639;QD=19.45;ReadPosRankSum=-1.317;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:25,182:0.88:207
chr11	636496	rs936461	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.554;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr11	636689	rs747302	G	C	2531.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-3.518;QD=35.16;ReadPosRankSum=3.171;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:10,62:0.86:72
chr11	636689	.	GG	CA	2061	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=20;MQ=60.22;NF=28;NR=23;PP=2061;QD=41.4601544091;SC=GGGGGCTGAGGGCCAGAGGCT;SbPval=0.67;Source=Platypus;TC=65;TCF=34;TCR=31;TR=51;WE=636714;WS=636679;set=Platypus	GT:AD:AF:DP	1/0:14,51:0.78:65
chr11	636690	rs936462	G	A	2531.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-3.518;QD=35.16;ReadPosRankSum=3.179;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:10,62:0.86:72
chr11	636701	rs3842250	CG	C	2696.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	636703	rs2396543	G	T	2705.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=43.64;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	636706	rs375614821	G	C	1283.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=-4.279;QD=21.05;ReadPosRankSum=3.332;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:6,55:0.90:61
chr11	639372	rs146876215	GGC	G	8584.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	640099	rs34662058	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;QD=32.25;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:0,19:1.00:19
chr11	640109	.	A	C	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-1.767;QD=17.66;ReadPosRankSum=5.079;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr11	640349	rs1870723	G	A	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr11	640369	rs7482904	G	C	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	651414	rs200274966	GA	G	109.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=1.645;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr11	651491	rs11246240	C	G	293.94	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr11	653968	rs10615	T	C	3072.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:28,129:0.82:157
chr11	654109	rs7109899	A	G	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr11	654147	rs7106020	T	G	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-0.183;QD=26.46;ReadPosRankSum=-0.972;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr11	654160	rs377145738	ACC	A	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-0.447;QD=37.25;ReadPosRankSum=0.230;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	654165	rs11246243	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.52;QD=46.29;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:0,6:1.00:6
chr11	654511	rs7951023	G	A	5784.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:40,254:0.86:294
chr11	674454	rs11246258	G	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr11	678561	rs10902190	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.348;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr11	686798	rs7121608	G	A	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:17,113:0.87:130
chr11	686839	rs7121478	G	A	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:29,154:0.84:183
chr11	688217	rs7126455	A	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr11	688312	rs7116631	G	A	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:18,103:0.85:121
chr11	704753	rs7941896	G	A	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	709680	rs11605783	T	C	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	710558	rs7395822	G	A	8550.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	710567	rs7396652	A	C	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=1.623;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	720197	rs3087546	C	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=2.091;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:161,40:0.20:201
chr11	720957	.	GC	G	179	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=3;HapScore=1;MGOF=16;MMLQ=21;MQ=58.95;NF=6;NR=3;PP=179;QD=25.3367666522;SC=GAGGGGAGGAGCCCGGCAGGG;SbPval=0.73;Source=Platypus;TC=36;TCF=22;TCR=14;TR=9;WE=720965;WS=720947;set=Platypus	GT:AD:AF:DP	0/1:27,9:0.25:36
chr11	721084	rs369270282	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.122;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:109,27:0.20:136
chr11	721570	rs7635	C	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=1.972;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:470,77:0.14:547
chr11	721877	rs74916186	G	C	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:28,134:0.83:162
chr11	722202	rs9734804	G	C	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:28,157:0.85:185
chr11	723429	rs4078520	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.125;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-2.704;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:118,22:0.16:140
chr11	726178	rs28498399	G	C	8611.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,309:1.00:310
chr11	726231	.	T	TG,TGG	5364.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.96;QD=32.51;SOR=2.122;set=HC	GT:AD:AF:DP	1/2:0,50,115:0.30,0.70:165
chr11	726581	rs10902206	T	C	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:18,82:0.82:100
chr11	726814	rs10902207	C	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr11	758927	rs34225557	CT	C	2089.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:30,102:0.77:132
chr11	771034	rs7930569	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.656;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:160,30:0.16:190
chr11	772490	rs12224894	G	A	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.175;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:459,96:0.17:555
chr11	775275	rs7942564	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.126;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr11	793502	rs79478359	C	T	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:58,206:0.78:264
chr11	793588	rs80335370	G	A	4221.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:28,186:0.87:214
chr11	799670	rs28649421	G	C	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	800485	rs7121646	TC	AT	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.027;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:378,73:0.16:451
chr11	801631	rs55974235	T	TG	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=5.630;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.742;QD=4.17;ReadPosRankSum=-1.819;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr11	801644	rs113521642	A	T	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:28,94:0.77:122
chr11	802115	rs7479101	A	G	14633.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	802125	rs28498421	T	C	14277.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	802379	rs10902221	T	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-0.605;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr11	802902	rs28360884	T	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	804027	rs77173309	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:11,56:0.84:67
chr11	804212	rs7104785	C	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.462;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:173,40:0.19:213
chr11	822622	rs7942159	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.278;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:97,20:0.17:117
chr11	823586	rs140201358	C	G	5515.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=11.478;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.67;ReadPosRankSum=-1.752;SOR=0.117;set=HC	GT:AD:AF:DP	1/1:21,212:0.91:233
chr11	824496	rs76574419	C	G	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:19,94:0.83:113
chr11	824789	rs1138693	T	C	9876.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	824805	rs1138694	C	T	7482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=-1.129;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:69,325:0.82:394
chr11	824987	rs66460720	CTGCA	C	9872.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	825110	rs1138714	A	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.388;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.737;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr11	828784	rs28507876	A	G	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	828916	rs7126805	G	A	11699.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr11	829539	rs28558789	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	830487	rs4075290	C	T	27180.77	.	AC=2;AF=1.00;AN=2;DB;DP=1036;set=Intersection	GT:AD:AF:DP	1/1:0,1029:1.00:1029
chr11	830670	rs4075289	G	T	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	831122	rs7114218	C	T	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	836008	rs5030778	T	C	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	836023	rs28475448	C	T	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	836227	rs28434354	A	G	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	836539	rs56063221	TG	T	3414.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,125:0.98:127
chr11	836971	rs28620453	G	C	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	837121	rs28655651	G	C	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	837582	rs1130663	G	A	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	837662	rs67261431	TG	T	1037.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	838110	rs5030780	C	T	13143.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr11	840319	rs3059	C	T	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	840363	rs6591	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.157;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:212,36:0.15:248
chr11	840477	rs4895	A	G	7446.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	840578	rs34627090	AC	A	3582.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr11	840604	rs28677123	C	G	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	840639	rs28636471	T	A	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	842543	rs28372895	C	G	6382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=4.109;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=-0.836;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:1,254:1.00:255
chr11	842627	rs9705236	T	C	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=5.387;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	842630	rs9704020	C	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=5.387;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	842653	rs35249369	C	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	849090	rs28402197	C	G	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	850170	rs28704105	T	G	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	862652	rs28505621	T	C	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	864626	rs28377158	A	G	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	865447	rs28423070	G	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	865503	rs28581489	G	A	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr11	866044	rs28457111	A	G	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	866183	rs28439203	T	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	866498	rs28663055	T	C	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	870524	rs10466744	G	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:5,45:0.90:50
chr11	900894	rs28454252	T	G	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	902939	rs12799186	G	A	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	903070	rs28380110	G	C	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	904911	rs28634117	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	993694	rs36081583	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.411;QD=1.34;ReadPosRankSum=0.845;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:166,30:0.15:196
chr11	1010649	rs72842410	C	T	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:29,111:0.79:140
chr11	1016640	rs111704427	G	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=4.830;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-4.702;QD=1.04;ReadPosRankSum=3.623;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:278,29:0.09:307
chr11	1016655	rs77024070	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=4.696;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-4.654;QD=0.86;ReadPosRankSum=1.907;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:308,29:0.09:337
chr11	1016665	rs77438942	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:319,40:0.11:359
chr11	1016704	rs75826443	C	A	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=3.616;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-10.362;QD=3.67;ReadPosRankSum=-0.805;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:359,65:0.15:424
chr11	1016713	rs76406481	T	C	2410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.259;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-11.692;QD=5.70;ReadPosRankSum=-0.864;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:347,76:0.18:423
chr11	1016715	rs78295717	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=2.270;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-10.045;QD=0.71;ReadPosRankSum=0.862;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:400,36:0.08:436
chr11	1016719	.	T	G	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DP=454;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-9.442;QD=0.86;ReadPosRankSum=-0.158;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:407,42:0.09:449
chr11	1016722	rs144616203	T	G	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.041;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=8.060;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-12.846;QD=5.03;ReadPosRankSum=-3.319;SOR=1.233;set=HC	GT:AD:AF:DP	0/1:371,94:0.20:465
chr11	1016724	rs3208810	A	G	5453.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:318,164:0.34:482
chr11	1016776	rs33988517	C	T	9612.77	.	AC=1;AF=0.500;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	0/1:399,355:0.47:754
chr11	1016779	.	G	A	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.939;ClippingRankSum=0.000;DP=889;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-5.477;QD=1.49;ReadPosRankSum=0.154;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:791,95:0.11:886
chr11	1016789	rs79968742	T	A	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-4.296;QD=1.13;ReadPosRankSum=1.924;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:880,92:0.09:972
chr11	1016800	rs199626069	G	A	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-6.160;QD=1.37;ReadPosRankSum=1.712;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:945,103:0.10:1048
chr11	1016802	rs77342817	T	A	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;ClippingRankSum=0.000;DB;DP=1056;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-3.571;QD=0.76;ReadPosRankSum=2.885;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:964,89:0.08:1053
chr11	1016810	rs75998609	G	T	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.962;ClippingRankSum=0.000;DB;DP=1111;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-2.959;QD=0.86;ReadPosRankSum=1.761;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:1012,95:0.09:1107
chr11	1016834	rs34740154	G	A	10231.77	.	AC=1;AF=0.500;AN=2;DB;DP=1276;set=Intersection	GT:AD:AF:DP	0/1:791,479:0.38:1270
chr11	1016869	rs35469308	A	T	19801.77	.	AC=1;AF=0.500;AN=2;DB;DP=1287;set=Intersection	GT:AD:AF:DP	0/1:617,558:0.47:1175
chr11	1016890	rs113508205	G	A	14894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=1194;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-2.231;QD=12.61;ReadPosRankSum=2.251;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:752,429:0.36:1181
chr11	1016894	rs34281988	G	A	16734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.666;ClippingRankSum=0.000;DB;DP=1166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-1.678;QD=14.51;ReadPosRankSum=-0.444;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:678,475:0.41:1153
chr11	1016910	rs113559934	G	A	9062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.390;ClippingRankSum=0.000;DB;DP=1098;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-4.732;QD=8.38;ReadPosRankSum=-0.191;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:790,291:0.27:1081
chr11	1016914	rs74632841	G	T	14784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=1088;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-1.899;QD=13.74;ReadPosRankSum=-0.361;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:678,398:0.37:1076
chr11	1016918	rs34375705	C	T	1644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=1062;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=4.648;QD=1.57;ReadPosRankSum=-1.019;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:907,143:0.14:1050
chr11	1016928	rs34053383	C	G	33555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DB;DP=1021;ExcessHet=3.0103;FS=5.680;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-8.932;QD=33.26;ReadPosRankSum=-0.960;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:188,821:0.81:1009
chr11	1016928	.	CTGGCC	GTGGCC,GTGGCT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=97;MMLQ=23;MQ=52.99;NF=508,161;NR=603,220;PP=2962,2944;QD=20;SC=CCTGCTGCTGCTGGCCGAGGT;SbPval=0.6;Source=Platypus;TC=1295;TCF=609;TCR=686;TR=1111,381;WE=1016941;WS=1016900;set=Platypus	GT:AF:DP	0/1:0.86:1295
chr11	1016933	rs199579978	C	T	12883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=1004;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-3.099;QD=12.90;ReadPosRankSum=3.324;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:650,349:0.35:999
chr11	1016957	rs200695483	T	G	9957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.053;ClippingRankSum=0.000;DB;DP=945;ExcessHet=3.0103;FS=5.695;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-3.642;QD=10.60;ReadPosRankSum=1.232;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:672,267:0.28:939
chr11	1016959	rs201219964	T	C	3729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=0.268;QD=4.05;ReadPosRankSum=-1.625;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:780,142:0.15:922
chr11	1016963	rs76273000	G	T	8626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=3.758;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-4.137;QD=9.37;ReadPosRankSum=-0.449;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:673,248:0.27:921
chr11	1016968	rs34243203	T	G	3297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.978;ClippingRankSum=0.000;DB;DP=912;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-0.834;QD=4.12;ReadPosRankSum=-3.310;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:673,127:0.16:800
chr11	1016972	.	G	A	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DP=891;ExcessHet=3.0103;FS=7.880;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-6.467;QD=2.04;ReadPosRankSum=0.934;SOR=1.630;set=HC	GT:AD:AF:DP	0/1:786,97:0.11:883
chr11	1016976	rs78728217	T	G	8747.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.077;ClippingRankSum=0.000;DB;DP=878;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.500;MQ=55.40;MQRankSum=-5.881;QD=10.04;ReadPosRankSum=-3.573;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:629,242:0.28:871
chr11	1016977	.	G	A	1507.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DP=875;ExcessHet=3.0103;FS=6.282;MLEAC=1;MLEAF=0.500;MQ=55.40;MQRankSum=-7.053;QD=1.74;ReadPosRankSum=0.173;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:777,91:0.10:868
chr11	1016978	rs76461263	T	G	6857.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.253;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-21.517;QD=10.34;ReadPosRankSum=0.864;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:461,202:0.30:663
chr11	1016984	rs78839362	G	A	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.829;ClippingRankSum=0.000;DB;DP=841;ExcessHet=3.0103;FS=8.452;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-7.905;QD=1.43;ReadPosRankSum=-1.272;SOR=1.662;set=HC	GT:AD:AF:DP	0/1:752,82:0.10:834
chr11	1016987	.	G	A	1099.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DP=830;ExcessHet=3.0103;FS=6.723;MLEAC=1;MLEAF=0.500;MQ=55.33;MQRankSum=-8.137;QD=1.34;ReadPosRankSum=-2.034;SOR=1.742;set=HC	GT:AD:AF:DP	0/1:744,79:0.10:823
chr11	1016988	rs72311383	ATGT	A	951.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=835;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=1.314;QD=1.15;ReadPosRankSum=-5.351;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:755,73:0.09:828
chr11	1016991	rs74788171	T	G	5973.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.568;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-19.422;QD=7.30;ReadPosRankSum=0.416;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:619,199:0.24:818
chr11	1017023	rs78989655	G	A	5960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.958;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-15.477;QD=7.60;ReadPosRankSum=-1.613;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:599,185:0.24:784
chr11	1017029	rs35621365	T	G	11520.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:393,358:0.48:751
chr11	1017035	.	A	AAT	6794.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DP=732;ExcessHet=3.0103;FS=6.982;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-15.128;QD=9.38;ReadPosRankSum=-3.144;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:532,192:0.27:724
chr11	1017040	.	GGT	G	6343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.044;ClippingRankSum=0.000;DP=714;ExcessHet=3.0103;FS=7.019;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-15.491;QD=9.13;ReadPosRankSum=-1.274;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:514,181:0.26:695
chr11	1017045	rs77885750	G	T	6094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=7.149;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-13.762;QD=8.61;ReadPosRankSum=-0.773;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:522,186:0.26:708
chr11	1017069	rs80333708	G	A	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=3.274;QD=2.99;ReadPosRankSum=1.455;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:536,155:0.22:691
chr11	1017084	rs34649796	G	A	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=3.637;QD=1.53;ReadPosRankSum=0.579;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:560,124:0.18:684
chr11	1017110	rs36130410	C	T	9567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=4.149;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-3.867;QD=14.86;ReadPosRankSum=1.860;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:387,257:0.40:644
chr11	1017112	rs77753732	G	C	9561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-3.618;QD=15.11;ReadPosRankSum=1.734;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:377,256:0.40:633
chr11	1017113	rs74202058	T	C	14024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-6.348;QD=22.16;ReadPosRankSum=0.674;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:267,366:0.58:633
chr11	1017135	.	G	A	1552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;ClippingRankSum=0.000;DP=639;ExcessHet=3.0103;FS=4.145;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-4.428;QD=2.44;ReadPosRankSum=1.270;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:558,79:0.12:637
chr11	1017154	rs112965257	T	G	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-5.674;QD=1.22;ReadPosRankSum=2.689;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:541,54:0.09:595
chr11	1017158	rs36143620	G	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-6.133;QD=0.92;ReadPosRankSum=2.526;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:547,52:0.09:599
chr11	1017161	rs374837441	C	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-5.883;QD=0.83;ReadPosRankSum=1.701;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:539,51:0.09:590
chr11	1017169	rs200932890	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-6.136;QD=0.89;ReadPosRankSum=0.036;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:510,48:0.09:558
chr11	1017173	rs61869004	G	A	13688.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:165,375:0.69:540
chr11	1017183	rs34844844	G	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-0.011;QD=0.55;ReadPosRankSum=4.588;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:442,78:0.15:520
chr11	1017186	rs74579726	A	G	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-6.305;QD=0.92;ReadPosRankSum=-2.684;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:488,45:0.08:533
chr11	1017200	.	G	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DP=484;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-6.826;QD=0.34;ReadPosRankSum=-4.268;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:442,41:0.08:483
chr11	1017220	rs56238842	T	C	12051.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:99,310:0.76:409
chr11	1017231	rs35840539	A	G	12582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=4.731;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-8.555;QD=32.85;ReadPosRankSum=-2.286;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:90,293:0.77:383
chr11	1017239	rs56386804	C	T	12228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.121;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=5.525;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=-8.737;QD=32.35;ReadPosRankSum=-1.977;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:90,288:0.76:378
chr11	1017240	rs62891761	G	A	5921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=10.866;MLEAC=1;MLEAF=0.500;MQ=55.68;MQRankSum=-1.770;QD=15.54;ReadPosRankSum=-1.509;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:127,254:0.67:381
chr11	1017280	rs199539548	G	T	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.502;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=2.618;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-4.243;QD=3.32;ReadPosRankSum=-1.607;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:425,71:0.14:496
chr11	1017294	rs200241162	A	T	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-4.477;QD=3.40;ReadPosRankSum=-0.393;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:454,83:0.15:537
chr11	1017302	rs35330958	G	C	8152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-11.343;QD=14.48;ReadPosRankSum=-0.223;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:349,214:0.38:563
chr11	1017317	rs33943903	G	T	9965.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:383,260:0.40:643
chr11	1017325	rs55903826	A	C	4510.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:448,239:0.35:687
chr11	1017337	rs76686156	TC	CA	11654.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;JOINED;set=Intersection	GT:AD:AF:DP	0/1:426,308:0.42:734
chr11	1017381	rs34912894	G	C	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-19.208;QD=0.67;ReadPosRankSum=2.681;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:684,102:0.13:786
chr11	1017384	rs34095361	G	C	6206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=781;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-15.339;QD=8.00;ReadPosRankSum=3.688;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:528,248:0.32:776
chr11	1017421	rs35549382	G	T	9892.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:447,297:0.40:744
chr11	1017440	rs78729877	C	T	11527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.362;ClippingRankSum=0.000;DB;DP=765;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-14.722;QD=15.15;ReadPosRankSum=0.117;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:454,307:0.40:761
chr11	1017443	rs80266715	C	G	10405.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:474,277:0.37:751
chr11	1017458	.	A	G	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DP=767;ExcessHet=3.0103;FS=3.476;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-4.962;QD=0.93;ReadPosRankSum=4.325;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:693,70:0.09:763
chr11	1017461	rs77216712	G	T	3423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-5.479;QD=4.49;ReadPosRankSum=3.878;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:638,124:0.16:762
chr11	1017464	.	T	G	4096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.247;ClippingRankSum=0.000;DP=768;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-15.582;QD=6.32;ReadPosRankSum=4.472;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:514,134:0.21:648
chr11	1017466	rs201054567	T	C	6126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-14.728;QD=8.69;ReadPosRankSum=4.256;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:522,183:0.26:705
chr11	1017467	.	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=0.000;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-2.644;QD=0.05;ReadPosRankSum=-0.301;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:712,53:0.07:765
chr11	1017470	rs75533660	G	T	8654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-15.436;QD=11.12;ReadPosRankSum=5.884;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:535,243:0.31:778
chr11	1017471	.	C	T	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DP=792;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-11.305;QD=1.89;ReadPosRankSum=3.838;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:703,87:0.11:790
chr11	1017474	.	G	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DP=794;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-6.068;QD=0.44;ReadPosRankSum=2.550;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:730,62:0.08:792
chr11	1017483	rs79986665	T	G	7649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.642;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-16.872;QD=9.50;ReadPosRankSum=6.925;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:585,220:0.27:805
chr11	1017485	.	G	A	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DP=805;ExcessHet=3.0103;FS=4.372;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-12.115;QD=2.06;ReadPosRankSum=6.401;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:677,87:0.11:764
chr11	1017495	rs67507057	ATGC	A	3296.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-13.412;QD=4.08;ReadPosRankSum=8.007;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:680,128:0.16:808
chr11	1017498	rs76707565	C	G	3510.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.360;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=3.414;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-8.135;QD=4.87;ReadPosRankSum=0.590;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:588,133:0.18:721
chr11	1017514	rs79037833	A	G	11043.77	.	AC=1;AF=0.500;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	0/1:516,309:0.37:825
chr11	1017529	rs200644196	G	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-2.859;QD=0.49;ReadPosRankSum=4.420;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:729,103:0.12:832
chr11	1017552	rs35868469	T	C	2276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-2.620;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:329,147:0.31:476
chr11	1017596	rs201522029	T	G	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.415;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.967;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:401,139:0.26:540
chr11	1017655	rs201234174	G	A	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.547;QD=4.02;ReadPosRankSum=-0.395;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:476,161:0.25:637
chr11	1017746	.	T	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=1;MMLQ=23;NF=216;NR=237;PP=2962;QD=20;SC=TGGCTGTGTTTAATGAGCTCA;SbPval=0.56;Source=Platypus;TC=1124;TCF=539;TCR=585;TR=453;WE=1017754;WS=1017734;set=Platypus	GT:AD:AF:DP	1/0:671,453:0.40:1124
chr11	1017773	rs57384288	G	A	5489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-3.080;QD=8.54;ReadPosRankSum=-0.524;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:469,174:0.27:643
chr11	1017783	rs36101709	A	G	5453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.744;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-3.022;QD=9.09;ReadPosRankSum=-1.340;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:434,166:0.28:600
chr11	1017833	rs373775476	C	T	3933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.249;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-6.388;QD=5.74;ReadPosRankSum=-1.174;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:540,145:0.21:685
chr11	1017844	rs200752571	T	C	3418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.476;QD=5.25;ReadPosRankSum=-3.727;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:534,117:0.18:651
chr11	1017845	rs74610224	C	G	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:525,117:0.18:642
chr11	1017858	rs79583615	A	G	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:498,88:0.15:586
chr11	1017941	rs61869007	G	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=1.835;QD=1.17;ReadPosRankSum=-2.723;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:233,25:0.10:258
chr11	1017963	rs61869008	G	A	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=21.245;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=3.593;QD=5.90;ReadPosRankSum=-1.320;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:175,41:0.19:216
chr11	1017968	rs61869009	T	A	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=31.519;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=4.003;QD=6.65;ReadPosRankSum=-0.580;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:164,45:0.22:209
chr11	1017981	rs61869010	T	A	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=31.426;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=5.280;QD=8.82;ReadPosRankSum=0.287;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:141,59:0.29:200
chr11	1017988	rs112579249	G	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=6.433;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-0.832;QD=1.88;ReadPosRankSum=-3.867;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:170,30:0.15:200
chr11	1018012	rs10751676	T	G	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.404;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=49.676;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=-8.806;QD=10.91;ReadPosRankSum=-2.928;SOR=2.639;set=HC	GT:AD:AF:DP	0/1:124,63:0.34:187
chr11	1018024	.	C	G	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=7.407;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=1.891;QD=8.44;ReadPosRankSum=-0.280;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:147,48:0.25:195
chr11	1018025	rs10751677	C	A	3968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.893;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=32.437;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-7.278;QD=20.15;ReadPosRankSum=-4.704;SOR=1.572;set=HC	GT:AD:AF:DP	0/1:98,99:0.50:197
chr11	1018031	rs10751678	G	A	3869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=35.291;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=-7.134;QD=19.95;ReadPosRankSum=-4.476;SOR=1.689;set=HC	GT:AD:AF:DP	0/1:100,94:0.48:194
chr11	1018042	rs200364398	A	G	2546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.027;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=1.394;QD=12.73;ReadPosRankSum=-0.028;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:130,70:0.35:200
chr11	1018048	rs12787400	A	G	2620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=0.742;QD=13.30;ReadPosRankSum=0.938;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:125,72:0.37:197
chr11	1018059	rs78336072	C	T	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:126,86:0.41:212
chr11	1018116	rs10902269	T	G	3727.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:173,112:0.39:285
chr11	1018138	rs71454075	T	C	3637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=4.977;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-6.104;QD=12.95;ReadPosRankSum=-0.475;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:182,99:0.35:281
chr11	1018144	rs12807084	G	C	3583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=7.647;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-6.328;QD=12.40;ReadPosRankSum=-0.858;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:192,97:0.34:289
chr11	1018169	rs77647814	C	G	2995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=7.090;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-7.261;QD=10.12;ReadPosRankSum=-3.801;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:214,82:0.28:296
chr11	1018175	rs12418172	A	G	2473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=6.477;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-7.833;QD=8.33;ReadPosRankSum=-3.244;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:225,72:0.24:297
chr11	1018182	.	G	T	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=4.054;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-8.634;QD=6.79;ReadPosRankSum=-2.834;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:234,62:0.21:296
chr11	1018186	.	G	T	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DP=296;ExcessHet=3.0103;FS=4.347;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-8.484;QD=5.50;ReadPosRankSum=-1.888;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:241,54:0.18:295
chr11	1018192	.	C	T	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=5.747;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-9.079;QD=4.72;ReadPosRankSum=-1.925;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:237,47:0.17:284
chr11	1018196	.	A	T	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=3.755;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-8.694;QD=4.09;ReadPosRankSum=-2.322;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:240,46:0.16:286
chr11	1018215	.	G	GCA	1021.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=3.848;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-10.559;QD=3.57;ReadPosRankSum=-3.591;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:243,43:0.15:286
chr11	1018218	.	T	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.564;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=39.086;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-8.388;QD=0.60;ReadPosRankSum=0.529;SOR=3.910;set=HC	GT:AD:AF:DP	0/1:250,23:0.08:273
chr11	1018220	.	T	A	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.826;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=28.528;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-10.162;QD=1.92;ReadPosRankSum=-0.294;SOR=2.773;set=HC	GT:AD:AF:DP	0/1:245,29:0.11:274
chr11	1018222	.	AAT	A	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.736;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=41.525;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-9.593;QD=0.95;ReadPosRankSum=-0.709;SOR=4.045;set=HC	GT:AD:AF:DP	0/1:242,25:0.09:267
chr11	1018226	.	T	G	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.557;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=31.708;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-10.888;QD=2.56;ReadPosRankSum=-1.320;SOR=2.787;set=HC	GT:AD:AF:DP	0/1:241,33:0.12:274
chr11	1018229	rs77630889	C	G	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.571;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=18.744;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-11.950;QD=3.02;ReadPosRankSum=-1.773;SOR=1.986;set=HC	GT:AD:AF:DP	0/1:238,38:0.14:276
chr11	1018232	rs113063572	G	T	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=11.704;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-14.213;QD=4.39;ReadPosRankSum=-1.807;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:223,44:0.16:267
chr11	1018237	rs79892432	GT	AG	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.993;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=7.381;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-14.071;QD=4.56;ReadPosRankSum=-1.272;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:218,44:0.17:262
chr11	1018245	rs76423553	TT	GC	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.354;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=6.090;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-13.946;QD=6.07;ReadPosRankSum=-0.783;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:204,45:0.18:249
chr11	1018256	.	T	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.205;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=16.996;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-6.303;QD=0.27;ReadPosRankSum=-0.944;SOR=2.329;set=HC	GT:AD:AF:DP	0/1:233,20:0.08:253
chr11	1018279	rs201852389	C	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=11.130;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-7.948;QD=2.76;ReadPosRankSum=1.919;SOR=1.634;set=HC	GT:AD:AF:DP	0/1:208,30:0.13:238
chr11	1018291	.	G	C	1361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=15.068;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-8.778;QD=5.90;ReadPosRankSum=2.096;SOR=1.691;set=HC	GT:AD:AF:DP	0/1:184,47:0.20:231
chr11	1018295	rs73403297	T	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:173,58:0.25:231
chr11	1018299	rs200809011	G	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=8.093;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-6.488;QD=2.36;ReadPosRankSum=1.746;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:202,28:0.12:230
chr11	1018303	.	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-5.767;QD=0.26;ReadPosRankSum=1.914;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:215,18:0.08:233
chr11	1018313	rs75499910	G	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=4.899;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-7.013;QD=2.95;ReadPosRankSum=2.149;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:195,30:0.13:225
chr11	1018316	rs201954368	G	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.019;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=10.112;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-6.779;QD=1.86;ReadPosRankSum=2.985;SOR=1.630;set=HC	GT:AD:AF:DP	0/1:200,27:0.12:227
chr11	1018329	.	T	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-6.505;QD=1.62;ReadPosRankSum=0.027;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:196,31:0.14:227
chr11	1018340	rs77556339	TG	CA	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=5.853;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-7.760;QD=4.21;ReadPosRankSum=-1.190;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:182,34:0.16:216
chr11	1018385	rs7396380	T	A	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.481;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-11.800;QD=6.47;ReadPosRankSum=-1.670;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:119,35:0.23:154
chr11	1018390	rs111785507	C	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=25.640;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-8.738;QD=1.56;ReadPosRankSum=-1.369;SOR=3.250;set=HC	GT:AD:AF:DP	0/1:140,16:0.10:156
chr11	1018456	rs79920422	G	A	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.218;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.781;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-8.428;QD=3.38;ReadPosRankSum=3.966;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:129,27:0.17:156
chr11	1018459	rs199760270	G	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-6.739;QD=2.14;ReadPosRankSum=3.944;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:136,18:0.12:154
chr11	1018473	rs112923701	A	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-7.456;QD=1.82;ReadPosRankSum=2.441;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:140,19:0.12:159
chr11	1018483	rs78265558	C	G	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=7.141;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-9.596;QD=3.15;ReadPosRankSum=2.728;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:141,25:0.15:166
chr11	1018496	rs67341709	G	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.373;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=8.854;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-10.028;QD=2.72;ReadPosRankSum=0.486;SOR=1.283;set=HC	GT:AD:AF:DP	0/1:155,25:0.14:180
chr11	1019375	rs9704308	C	T	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	1023682	rs72842416	G	A	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr11	1078755	rs41533950	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr11	1079532	.	C	CT	751	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=67;MMLQ=24;MQ=55.31;NF=18;NR=5;PP=751;QD=34.0869565217;SC=GGGACACTCACCACGCCGGGC;SbPval=0.69;Source=Platypus;TC=24;TCF=18;TCR=6;TR=23;WE=1079545;WS=1079524;set=Platypus	GT:AD:AF:DP	0/1:1,23:0.96:24
chr11	1079534	.	ACGCC	AC,A	751	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=67;MMLQ=24;MQ=55.15;NF=16,16;NR=5,5;PP=351,751;QD=18.2857142857;SC=GACACTCACCACGCCGGGCAC;SbPval=0.79;Source=Platypus;TC=23;TCF=16;TCR=7;TR=21,21;WE=1079545;WS=1079524;set=Platypus	GT:AF:DP	0/1:0.91:23
chr11	1079809	rs10902081	C	T	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:40,119:0.75:159
chr11	1079879	rs7127117	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.219;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:59,14:0.19:73
chr11	1080164	rs11245926	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.400;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr11	1080576	rs41349846	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.056;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:171,36:0.17:207
chr11	1081074	rs41411848	T	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.415;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:370,70:0.16:440
chr11	1081112	rs41345745	G	C	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.221;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:283,51:0.15:334
chr11	1081151	rs41464048	T	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=1.439;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:192,35:0.15:227
chr11	1081577	rs12416873	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=4.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.15;ReadPosRankSum=-0.675;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:379,51:0.12:430
chr11	1082419	rs11820653	G	A	1459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.182;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:284,61:0.18:345
chr11	1082424	rs41401046	G	A	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.439;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:265,56:0.17:321
chr11	1082520	rs11245930	A	G	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.709;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:273,45:0.14:318
chr11	1082533	rs41343848	G	A	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.885;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:301,47:0.14:348
chr11	1082982	rs11245932	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.251;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:269,40:0.13:309
chr11	1083293	rs7394853	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=10.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.276;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:165,27:0.14:192
chr11	1083364	rs7396030	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-0.607;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:59,9:0.13:68
chr11	1083495	rs11245933	G	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.430;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr11	1084821	rs10794288	T	C	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=2.024;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:363,72:0.17:435
chr11	1086576	rs10648591	C	CTG	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.545;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-3.213;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr11	1086579	rs28718686	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-4.315;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr11	1087410	rs10751639	G	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-0.741;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:119,18:0.13:137
chr11	1087972	rs10902088	C	T	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.426;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:337,67:0.17:404
chr11	1090933	rs41455844	C	A	4241.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:32,200:0.86:232
chr11	1093354	rs56290335	T	A	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.963;ClippingRankSum=0.000;DB;DP=2448;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-20.510;QD=0.25;ReadPosRankSum=-18.759;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:2098,189:0.08:2287
chr11	1093430	rs199573018	C	A	4815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=2081;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=5.360;QD=2.64;ReadPosRankSum=6.917;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:1405,419:0.23:1824
chr11	1093452	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=4;HapScore=1;MGOF=23;MMLQ=25;MQ=47.73;NF=241;NR=553;PP=2962;QD=20;SC=CCCCAACCCCGACACCCACCG;SbPval=0.96;Source=Platypus;TC=2404;TCF=1040;TCR=1364;TR=794;WE=1093460;WS=1093442;set=Platypus	GT:AD:AF:DP	1/0:1610,794:0.33:2404
chr11	1093512	rs34493663	C	A	6256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.535;ClippingRankSum=0.000;DB;DP=1266;ExcessHet=3.0103;FS=4.489;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-3.329;QD=5.01;ReadPosRankSum=-2.296;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:863,385:0.31:1248
chr11	1093710	rs7944723	C	G	36743.77	.	AC=2;AF=1.00;AN=2;DB;DP=1399;set=Intersection	GT:AD:AF:DP	1/1:1,1393:1.00:1394
chr11	1093945	rs7934606	T	C	7370.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	1094629	rs11245950	T	C	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	1094690	rs10794291	C	T	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	1094753	rs10794292	A	C	10447.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	1095082	rs6597999	A	C	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	1096494	rs6421972	T	C	15303.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr11	1098637	rs12418069	A	G	6107.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr11	1103786	rs9988872	A	G	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	1154073	rs33962059	A	AC	1476.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.297;QD=27.86;ReadPosRankSum=-0.978;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr11	1154369	rs74477410	G	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.148;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.534;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:220,40:0.15:260
chr11	1158073	rs28691231	T	C	10964.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr11	1158834	rs28433367	C	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	1159133	rs35917282	G	A	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	1159150	rs28542750	A	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	1161315	rs28403537	T	C	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	1213245	rs67624660	T	A	104518.77	.	AC=1;AF=0.500;AN=2;DB;DP=3918;set=Intersection	GT:AD:AF:DP	0/1:1201,2677:0.69:3878
chr11	1213256	rs370028072	C	T	12322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.921;ClippingRankSum=0.000;DB;DP=3788;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.058;QD=3.29;ReadPosRankSum=2.991;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:2930,819:0.22:3749
chr11	1213257	rs76779582	T	C	108559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=3757;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.336;QD=29.20;ReadPosRankSum=-0.135;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:1147,2571:0.69:3718
chr11	1213259	rs75991767	T	G	108137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=3731;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.323;QD=29.30;ReadPosRankSum=-0.428;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:1123,2568:0.70:3691
chr11	1213264	rs72846341	G	A	106874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.654;ClippingRankSum=0.000;DB;DP=3666;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.319;QD=29.59;ReadPosRankSum=0.152;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:1094,2518:0.70:3612
chr11	1213272	rs78252457	A	C	93482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.252;ClippingRankSum=0.000;DB;DP=3694;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.543;QD=25.60;ReadPosRankSum=5.759;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:1362,2290:0.63:3652
chr11	1213275	rs71251383	G	A	19867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.716;ClippingRankSum=0.000;DB;DP=3706;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-4.057;QD=5.42;ReadPosRankSum=2.664;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:2948,717:0.20:3665
chr11	1213281	rs75618268	C	T	92942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.649;ClippingRankSum=0.000;DB;DP=3679;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.566;QD=25.55;ReadPosRankSum=4.483;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:1382,2256:0.62:3638
chr11	1213284	rs200981907	C	T	19618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.481;ClippingRankSum=0.000;DB;DP=3676;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-4.086;QD=5.40;ReadPosRankSum=2.128;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:2932,703:0.19:3635
chr11	1213287	rs112774721	G	A	22522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=3681;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.036;QD=6.19;ReadPosRankSum=0.879;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:2871,769:0.21:3640
chr11	1213293	rs77207494	C	T	54283.77	.	AC=1;AF=0.500;AN=2;DB;DP=3655;set=Intersection	GT:AD:AF:DP	0/1:2188,1427:0.39:3615
chr11	1213296	rs78466479	A	G	10158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.254;ClippingRankSum=0.000;DB;DP=3644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.770;QD=2.82;ReadPosRankSum=-1.555;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:3140,465:0.13:3605
chr11	1213302	rs371630624	T	C	11550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.507;ClippingRankSum=0.000;DB;DP=3612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.565;QD=3.23;ReadPosRankSum=0.762;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:3081,491:0.14:3572
chr11	1213311	rs80058880	C	T	13498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.634;ClippingRankSum=0.000;DB;DP=3530;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.602;QD=3.87;ReadPosRankSum=3.536;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:2957,535:0.15:3492
chr11	1213314	rs73395695	C	T	73526.77	.	AC=1;AF=0.500;AN=2;DB;DP=3518;set=Intersection	GT:AD:AF:DP	0/1:1570,1907:0.55:3477
chr11	1213317	rs76191775	G	A	14207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=3522;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.623;QD=4.08;ReadPosRankSum=3.719;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:2918,566:0.16:3484
chr11	1213405	rs67262263	G	A	33579.77	.	AC=1;AF=0.500;AN=2;DB;DP=2561;set=Intersection	GT:AD:AF:DP	0/1:1437,1109:0.44:2546
chr11	1213416	rs78511643	G	A	11046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=2379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.236;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:1714,655:0.28:2369
chr11	1213424	rs61867531	A	G	71583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.060;ClippingRankSum=0.000;DB;DP=2233;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.23;ReadPosRankSum=1.735;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:486,1735:0.78:2221
chr11	1213428	rs61867532	T	C	46257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.821;ClippingRankSum=0.000;DB;DP=2199;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.12;ReadPosRankSum=-1.342;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:852,1338:0.61:2190
chr11	1213440	rs61867533	T	C	64138.77	.	AC=1;AF=0.500;AN=2;DB;DP=2002;set=Intersection	GT:AD:AF:DP	0/1:461,1527:0.77:1988
chr11	1213460	rs200307483	G	A	4141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=1796;ExcessHet=3.0103;FS=4.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=2.844;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:1556,215:0.12:1771
chr11	1213461	rs61867534	T	G	17342.77	.	AC=1;AF=0.500;AN=2;DB;DP=1783;set=Intersection	GT:AD:AF:DP	0/1:950,806:0.46:1756
chr11	1213533	rs73395699	C	T	11084.77	.	AC=1;AF=0.500;AN=2;DB;DP=1185;set=Intersection	GT:AD:AF:DP	0/1:575,541:0.48:1116
chr11	1215271	rs71025716	GA	G	2243.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	1215698	rs28452143	A	G	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.350;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:263,60:0.19:323
chr11	1216316	rs58550179	G	GC	17120.73	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	1216333	rs60138698	TA	T	17130.73	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr11	1216440	rs28415193	G	C	23832.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr11	1216491	rs1132434	G	C	22191.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr11	1217228	rs28592983	T	C	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.256;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:227,49:0.18:276
chr11	1218143	rs28515631	A	C	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	1219482	rs80334578	T	C	5558.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:37,232:0.86:269
chr11	1220967	rs1132436	C	T	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	1221592	rs28728088	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	1221817	rs1132440	G	C	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	1246769	rs78468756	G	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=1.381;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:128,20:0.14:148
chr11	1246941	rs2672785	A	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-2.986;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:175,35:0.17:210
chr11	1248197	rs908224	G	T	771.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.12;ReadPosRankSum=-1.160;SOR=0.546;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	1248491	rs908223	T	G	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	1248723	rs55902810	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.275;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:83,16:0.16:99
chr11	1248731	rs2075854	A	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=2.008;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:80,14:0.15:94
chr11	1250068	rs144854459	T	TG	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	1250384	rs2471912	A	G	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:33,120:0.78:153
chr11	1250488	rs2075859	C	T	5330.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:55,242:0.81:297
chr11	1250603	rs2075860	G	C	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:32,148:0.82:180
chr11	1250696	rs10832955	C	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr11	1252047	rs2672807	T	C	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	1252708	rs2735709	G	C	14891.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr11	1253401	rs12421917	C	G	9086.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr11	1253856	rs1318321	T	C	12666.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr11	1253942	rs908229	T	C	9385.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr11	1253969	rs72846370	A	G	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.219;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-2.284;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:204,55:0.21:259
chr11	1253976	rs76956995	A	G	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-3.026;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:195,49:0.20:244
chr11	1253980	rs202127660	A	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.629;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-2.816;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:188,43:0.19:231
chr11	1254038	rs11026355	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:7,84:0.92:91
chr11	1254599	rs2672806	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	1254940	rs2735719	G	A	1108.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.32;ReadPosRankSum=-0.147;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:3,49:0.94:52
chr11	1255089	rs147340559	CCCCTG	C	1862.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:13,50:0.79:63
chr11	1255773	rs7116614	C	T	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:29,106:0.79:135
chr11	1257867	rs2672803	T	C	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	1258175	rs80092233	C	T	4843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=20.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=-9.080;SOR=1.938;set=HC	GT:AD:AF:DP	0/1:516,146:0.22:662
chr11	1258192	rs76589014	AT	TC	5451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=15.411;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=-1.218;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:543,166:0.23:709
chr11	1258197	rs78674028	A	G	5631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=11.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=0.537;SOR=1.589;set=HC	GT:AD:AF:DP	0/1:544,173:0.24:717
chr11	1258199	rs80200632	C	T	6258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=11.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=1.250;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:534,172:0.24:706
chr11	1258217	rs74648489	T	G	7305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=13.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=2.822;SOR=1.558;set=HC	GT:AD:AF:DP	0/1:496,207:0.29:703
chr11	1258226	rs55700357	C	T	7839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=11.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=2.937;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:455,215:0.32:670
chr11	1258240	rs77287508	CA	TG	8055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=10.171;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=3.710;SOR=1.361;set=HC	GT:AD:AF:DP	0/1:411,220:0.35:631
chr11	1258283	rs78669250	G	A	7718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=4.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=2.735;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:298,207:0.41:505
chr11	1258286	rs77996005	C	T	7696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.919;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:280,205:0.42:485
chr11	1258295	rs79118814	A	G	7493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=2.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.23;ReadPosRankSum=-0.156;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:242,193:0.44:435
chr11	1260145	rs75799984	T	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=17.637;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-3.803;SOR=1.521;set=HC	GT:AD:AF:DP	0/1:291,62:0.18:353
chr11	1260157	rs78678736	G	C	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=13.902;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.138;QD=4.79;ReadPosRankSum=0.366;SOR=1.407;set=HC	GT:AD:AF:DP	0/1:299,65:0.18:364
chr11	1260160	rs78177850	T	G	1854.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.303;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=13.902;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.138;QD=5.08;ReadPosRankSum=0.899;SOR=1.407;set=HC	GT:AD:AF:DP	0/1:299,66:0.18:365
chr11	1260163	rs79220674	C	T	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=12.677;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.120;QD=4.88;ReadPosRankSum=1.433;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:294,65:0.18:359
chr11	1260175	rs75760167	T	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=11.590;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.116;QD=2.07;ReadPosRankSum=1.878;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:284,63:0.18:347
chr11	1260193	rs74763753	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=9.197;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.056;QD=1.82;ReadPosRankSum=-0.513;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:264,62:0.19:326
chr11	1260214	rs79585387	C	T	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.384;QD=3.21;ReadPosRankSum=-3.018;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:235,41:0.15:276
chr11	1260217	rs79638064	C	A	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.515;QD=3.04;ReadPosRankSum=-2.577;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:236,37:0.14:273
chr11	1260219	rs75935363	CG	TA	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.660;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.550;QD=2.89;ReadPosRankSum=-2.686;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:236,36:0.13:272
chr11	1261640	rs2735733	C	T	8125.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:70,334:0.83:404
chr11	1262045	rs56166347	T	C	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr11	1262907	rs2037089	T	C	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.457;QD=1.85;ReadPosRankSum=1.255;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:427,91:0.18:518
chr11	1263234	rs56117556	A	G	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.462;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:435,89:0.17:524
chr11	1267325	rs55813014	T	C	21200.77	.	AC=1;AF=0.500;AN=2;DB;DP=1055;set=Intersection	GT:AD:AF:DP	0/1:216,837:0.79:1053
chr11	1267562	rs60268710	C	T	9935.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:83,392:0.83:475
chr11	1270965	rs114687104	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=1.012;QD=1.40;ReadPosRankSum=-0.080;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:787,158:0.17:945
chr11	1271300	.	C	T	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;ClippingRankSum=0.000;DP=623;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.500;MQ=51.84;MQRankSum=-1.563;QD=1.73;ReadPosRankSum=0.339;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:509,112:0.18:621
chr11	1271321	rs2943517	C	G	11030.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:97,435:0.82:532
chr11	1272226	rs2943512	A	C	20030.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr11	1272793	rs56159668	C	T	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=0.973;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:508,84:0.14:592
chr11	1272800	rs55693520	C	T	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.913;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:512,88:0.15:600
chr11	1272858	rs4963059	C	T	13324.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:116,582:0.83:698
chr11	1273049	rs55649457	C	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.048;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:100,16:0.14:116
chr11	1275592	rs56088961	GC	AA	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.316;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:159,28:0.15:187
chr11	1277272	rs182226900	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.472;QD=2.44;ReadPosRankSum=0.457;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:77,11:0.12:88
chr11	1277319	rs116153306	G	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.145;QD=1.76;ReadPosRankSum=-0.734;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:243,56:0.19:299
chr11	1279486	rs2249550	A	G	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.78;SOR=3.177;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	1279527	rs55954116	A	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-0.469;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:261,42:0.14:303
chr11	1280238	rs55856616	G	A	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=1.910;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:526,115:0.18:641
chr11	1280362	rs56225362	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.264;QD=1.19;ReadPosRankSum=-0.142;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:84,16:0.16:100
chr11	1281134	rs2857476	T	C	11403.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr11	1281787	rs56152756	G	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.270;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:348,55:0.14:403
chr11	1281932	rs61734215	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.116;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:399,79:0.17:478
chr11	1284227	rs12417955	A	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	1284409	rs55831269	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.392;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:135,29:0.18:164
chr11	1411501	rs112066837	C	T	680.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.90;ReadPosRankSum=0.069;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:4,32:0.89:36
chr11	1411681	.	AGGCCCCGGCCGCGAAGCCGCAGGCCCGGCCCG	A	55.52	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	1432691	rs61868960	T	C	7076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=0.833;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:69,305:0.82:374
chr11	1432949	rs112544636	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr11	1457472	rs115584864	G	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.94;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	1462162	rs61002819	AG	A	3305.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	1462217	rs9651643	C	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	1464903	rs56896587	CG	C	2857.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	1464931	rs200172547	TGTGTGTGCACAG	T	286.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,12:0.19:63
chr11	1471095	rs117021012	C	T	3905.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:49,200:0.80:249
chr11	1471154	rs11028332	C	T	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:27,105:0.80:132
chr11	1471751	rs2272424	C	T	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.294;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=2.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.949;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:214,49:0.19:263
chr11	1472050	rs61869028	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.516;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:108,22:0.17:130
chr11	1472475	rs3838784	TG	T	4518.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	1475628	rs66529968	C	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr11	1477768	rs67861777	C	T	8351.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:73,368:0.83:441
chr11	1481610	rs28555282	T	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,35:0.92:38
chr11	1481690	rs150300634	CCTT	C	3125.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.73;ReadPosRankSum=1.063;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:7,83:0.92:90
chr11	1481697	.	T	C	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=0.229;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:21,69:0.77:90
chr11	1481930	rs4963048	A	G	1171.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.947;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.58;ReadPosRankSum=-1.363;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr11	1481962	rs34875491	GC	G	416.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=-1.574;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr11	1491096	rs9440	G	A	7546.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:95,328:0.78:423
chr11	1491341	rs62623399	C	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.010;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:529,94:0.15:623
chr11	1492445	rs4881724	A	G	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	1501670	rs10742185	G	C	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	1502097	rs10767696	A	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	1502401	rs4881735	A	C	3910.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.07;ReadPosRankSum=-0.579;SOR=0.363;set=HC	GT:AD:AF:DP	1/1:1,149:0.99:150
chr11	1507512	rs1881502	T	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	1507731	rs1881503	A	G	8703.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:2,334:0.99:336
chr11	1507795	rs1110206	G	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-2.239;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:128,32:0.20:160
chr11	1509143	rs1105871	T	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=2.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=1.271;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:262,46:0.15:308
chr11	1509238	rs2334554	T	C	15683.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:1,604:1.00:605
chr11	1509421	rs2334553	G	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr11	1576005	rs59483236	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr11	1576137	rs11604635	C	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-2.100;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr11	1576235	rs6578504	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	1576283	rs11603496	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr11	1576501	rs76782264	T	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.584;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:79,21:0.21:100
chr11	1576863	rs12576976	A	G	293.53	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr11	1578090	rs7129499	G	A	88.10	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr11	1585277	rs3740620	C	T	4070.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:29,176:0.86:205
chr11	1605947	.	C	CCACAGCCCCCCTTGGAGCCCCCACAAGAACCGCAGCCCCCCTTGCAGCCTCCACAGGAGT	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.945;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=17.175;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.931;SOR=4.186;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr11	1606120	.	ACCACAGCCACCCTTGGATCCCCCACAAGAG	A	3622.73	.	AC=1;AF=0.500;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	0/1:18,95:0.84:113
chr11	1619172	.	ACCCCCACAGGAGCCACAGCCCCCCTTGGAG	A	3071.73	.	AC=2;AF=1.00;AN=2;DP=210;set=Intersection	GT:AD:AF:DP	1/1:5,84:0.94:89
chr11	1628844	rs1989592	A	G	7622.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	1628965	rs57186801	G	A	23264.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr11	1628992	rs60210378	G	A	22636.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=41.46;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,546:1.00:546
chr11	1630342	rs10837527	T	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	1651423	.	G	C	119	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=5;HapScore=3;MGOF=19;MMLQ=28;MQ=51.79;NF=4;NR=0;PP=119;QD=38.4428031368;SC=TCCAAGGGGGGCTGTGGCTCC;SbPval=1.0;Source=Platypus;TC=19;TCF=14;TCR=5;TR=4;WE=1651431;WS=1651401;set=Platypus	GT:AD:AF:DP	0/1:15,4:0.21:19
chr11	1651540	rs61867581	C	G	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.91;QD=47.29;SOR=2.624;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	1651540	.	CCAGCTGCTGCAAGCC	GCAGCTGCTGTAAGCA,GCAGCTGCTGTAAGCC	1790	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=84;MMLQ=27;MQ=48.84;NF=73,98;NR=19,31;PP=1790,633;QD=20.1463899442;SC=TGCTCCCAGTCCAGCTGCTGC;SbPval=0.63;Source=Platypus;TC=139;TCF=108;TCR=31;TR=92,129;WE=1651563;WS=1651530;set=Platypus	GT:AF:DP	0/1:0.66:139
chr11	1651550	rs61867582	C	T	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.58;QD=45.51;SOR=2.483;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	1651555	rs147101544	C	A	4455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=5.318;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-1.012;QD=29.51;ReadPosRankSum=-0.824;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:41,110:0.73:151
chr11	1651594	.	AGTCC	A	8100.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=0.060;QD=27.84;ReadPosRankSum=-3.296;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:67,224:0.77:291
chr11	1651599	.	AGCTGCTGTAAGCCTTACTGCTGCCAG	A	7992.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.776;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-0.471;QD=26.29;ReadPosRankSum=-3.184;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:78,226:0.74:304
chr11	1651613	.	TTACTGCTGCCAGTCCAGCTGCTGTAAGCCC	T	1087.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DP=391;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-1.254;QD=2.92;ReadPosRankSum=3.561;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:314,58:0.16:372
chr11	1651625	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=1;MGOF=30;MMLQ=22;MQ=48.4;NF=99;NR=54;PP=2962;QD=20;SC=ACTGCTGCCAGTCCAGCTGCT;SbPval=0.6;Source=Platypus;TC=251;TCF=159;TCR=92;TR=153;WE=1651650;WS=1651575;set=Platypus	GT:AD:AF:DP	1/0:98,153:0.61:251
chr11	1651830	rs4752770	G	T	8235.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	1651917	rs4752769	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	1776024	rs55725229	TC	T	2335.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	1776332	rs2292963	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.857;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr11	1780704	rs149907533	A	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.21;ReadPosRankSum=-0.418;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:287,38:0.12:325
chr11	1853107	rs616594	C	T	4926.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:50,234:0.82:284
chr11	1853121	rs867839	C	T	4984.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:43,216:0.83:259
chr11	1855854	rs2063551	G	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	1857173	rs564271	T	C	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	1857747	rs3741232	T	C	8819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.32;ReadPosRankSum=0.859;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:41,216:0.84:257
chr11	1857751	rs3741231	C	G	8896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.75;ReadPosRankSum=-0.413;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:38,218:0.85:256
chr11	1857930	rs3741229	G	A	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:20,114:0.85:134
chr11	1858262	rs484955	C	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.407;QD=0.93;ReadPosRankSum=0.296;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:332,57:0.15:389
chr11	1858572	rs2292474	C	T	8090.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:57,332:0.85:389
chr11	1861760	rs907610	T	C	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:26,110:0.81:136
chr11	1890971	rs76102571	C	A	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=26.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	1891035	rs61278563	G	GA	873.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	1891284	rs688601	T	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	1891905	rs12416967	C	G	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	1901467	rs2271439	A	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	1902635	rs536462	G	T	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	1905292	rs661348	T	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.473;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:412,85:0.17:497
chr11	1905653	rs56024612	G	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:23,128:0.85:151
chr11	1910635	rs869444	C	T	3705.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:42,161:0.79:203
chr11	1910707	rs613638	T	C	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	1911115	rs11041692	T	C	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	1944050	rs370860604	CCT	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.228;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:387,47:0.11:434
chr11	1944202	rs965912	A	G	6485.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:59,271:0.82:330
chr11	1944636	rs2734500	A	T	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:11,81:0.88:92
chr11	1950302	rs629990	A	G	11343.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	1950906	rs2292473	T	G	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	1950925	rs2292471	T	C	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.04;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	1956212	rs513735	T	C	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	1961701	rs375322681	TCTCACACA	TCACA,T	649.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	1/1:0.79:29
chr11	1961869	rs11041941	T	C	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	1976988	rs177720	A	G	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	1993975	rs190063	C	A	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	2016619	rs3741219	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	2016659	rs2839704	T	C	6571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.05;ReadPosRankSum=0.322;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:32,161:0.83:193
chr11	2016662	rs2839703	T	C	6629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.15;ReadPosRankSum=-0.068;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:33,167:0.83:200
chr11	2016924	rs10840159	A	G	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	2017017	rs2839702	A	C	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.04;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	2017110	rs2839701	C	G	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	2017439	rs3024270	C	G	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	2018168	rs2067051	C	T	17513.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr11	2018336	rs2075745	A	T	12332.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr11	2018449	rs2075744	A	G	21508.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,802:1.00:802
chr11	2018853	rs2839698	G	A	30047.77	.	AC=2;AF=1.00;AN=2;DB;DP=1132;set=Intersection	GT:AD:AF:DP	1/1:0,1129:1.00:1129
chr11	2154188	rs2230949	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.388;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr11	2154964	rs3213232	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.726;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:46,8:0.15:54
chr11	2156536	rs3213225	G	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	2161858	rs3741212	A	G	2069.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.48;ReadPosRankSum=1.416;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:10,102:0.91:112
chr11	2167543	rs1003483	T	G	5798.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:58,249:0.81:307
chr11	2167618	rs1003484	A	G	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:19,125:0.87:144
chr11	2169014	rs10770125	A	G	1336.78	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:6,54:0.90:60
chr11	2181060	rs3842753	T	G	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	2182004	rs5506	A	G	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	2182224	rs689	A	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	2186335	rs2070762	A	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	2187071	rs6578990	T	C	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	2187398	rs4072823	T	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	2187439	rs4072824	C	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	2188566	rs7925924	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	2189185	rs4074905	G	A	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	2190951	rs6356	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-1.273;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:153,34:0.18:187
chr11	2191954	.	G	A	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.975;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr11	2193001	rs74555599	C	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.172;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:97,24:0.20:121
chr11	2194175	rs10743149	T	C	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	2194390	rs10840491	G	A	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:18,68:0.79:86
chr11	2194420	rs10770142	G	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr11	2291498	.	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.852;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=1.261;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr11	2323022	rs12276847	C	T	1890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.134;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:530,88:0.14:618
chr11	2323029	rs756924	T	C	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.404;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:523,83:0.14:606
chr11	2323528	rs2074021	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.711;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr11	2324041	rs2074022	A	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.085;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:161,37:0.19:198
chr11	2324692	rs1501467	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.217;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:137,22:0.14:159
chr11	2324852	rs2651824	A	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	2329995	rs11554947	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.569;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:110,27:0.20:137
chr11	2330077	rs2234297	C	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.342;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:114,22:0.16:136
chr11	2330563	rs2521275	C	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.175;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:122,23:0.16:145
chr11	2334740	rs739546	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.906;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr11	2337012	rs11022252	G	C	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	2356769	rs2651794	T	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=3.686;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-4.697;QD=1.41;ReadPosRankSum=0.517;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:384,70:0.15:454
chr11	2407084	rs71029143	G	GT	9962.73	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:71,300:0.81:371
chr11	2407832	rs368221305	C	T	4423.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:43,188:0.81:231
chr11	2424684	rs2234283	A	C	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	2427364	rs61873460	T	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.524;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:326,56:0.15:382
chr11	2432820	rs2651822	A	G	8669.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	2432964	rs2074234	T	C	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.580;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:155,33:0.18:188
chr11	2435910	rs76270811	G	GC	1748.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	2435931	rs4929980	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	2435946	rs4929981	A	G	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=1.349;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	2435956	rs4929982	C	T	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	2439542	rs3986599	A	G	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:18,92:0.84:110
chr11	2439621	rs2074236	A	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr11	2439651	rs886276	G	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr11	2439672	rs147746598	T	TC	1527.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr11	2439767	rs886277	T	C	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:28,159:0.85:187
chr11	2439876	rs886278	G	A	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:32,155:0.83:187
chr11	2440041	rs4244810	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr11	2441686	rs35998237	T	TG	1065.74	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:4,35:0.90:39
chr11	2542605	rs10400376	TA	GG	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	2549329	rs145292450	TGG	T	5240.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	2593185	rs7128407	C	T	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:52,216:0.81:268
chr11	2683357	rs760419	A	G	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr11	2789856	rs163161	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	2797237	rs1057128	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.713;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:106,16:0.13:122
chr11	2797320	rs163150	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:4,47:0.92:51
chr11	2798448	rs163148	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	2868878	rs3852520	T	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.323;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:105,22:0.17:127
chr11	2905204	rs34289096	G	GC	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-1.254;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:134,25:0.16:159
chr11	2906196	.	ACCGCGACCGGAG	A	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=4.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=1.185;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr11	2920666	rs365605	C	T	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	2924610	rs1048047	G	A	4825.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:56,207:0.79:263
chr11	2924850	rs34816459	T	TC	3355.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:23,102:0.82:125
chr11	2924856	.	C	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.546;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-0.147;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:94,22:0.19:116
chr11	2929552	rs429886	A	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:27,81:0.75:108
chr11	2929659	rs424663	G	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr11	2930594	rs67769451	CG	C	1485.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	2930656	rs2286660	T	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr11	2939392	rs445679	G	A	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	2940492	rs450244	T	C	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	2972439	rs2071118	C	T	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:40,132:0.77:172
chr11	2973159	rs2071117	G	A	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:13,85:0.87:98
chr11	2975987	rs2073581	A	G	6909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=2.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.33;ReadPosRankSum=0.819;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:77,300:0.80:377
chr11	2979798	rs7940694	G	T	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	2991219	rs2071110	C	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.103;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr11	2997485	rs2277298	G	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	2999507	rs3814964	G	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-2.257;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:131,28:0.18:159
chr11	3000330	rs11826983	G	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr11	3000395	rs10488674	C	T	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr11	3026692	rs4758458	T	G	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	3026712	rs7931504	C	T	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:5,76:0.94:81
chr11	3027889	rs756693	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.878;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.920;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr11	3028140	rs729662	G	A	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.735;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:275,61:0.18:336
chr11	3028270	rs7950766	A	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:20,60:0.75:80
chr11	3033594	rs12808132	G	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.228;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr11	3036933	rs2071104	G	T	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:20,88:0.81:108
chr11	3041572	rs185712179	C	T	9527.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:66,413:0.86:479
chr11	3048140	rs494427	A	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr11	3050210	rs434114	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.074;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr11	3061949	rs2285390	C	A	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	3076018	rs7934892	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	3076257	rs7945933	C	T	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	3078536	rs4758463	C	G	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:29,125:0.81:154
chr11	3109279	rs11553374	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	3109284	rs3217567	G	GC	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	3109403	rs2289999	A	G	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=45.38;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	3109408	rs2289998	C	T	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=43.09;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	3109426	rs10160757	T	C	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=27.29;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	3110976	rs895563	A	G	432.84	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr11	3111866	rs2277301	C	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:19,69:0.78:88
chr11	3113596	rs113239327	C	T	832.78	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	3114965	.	C	T	7660.77	.	AC=1;AF=0.500;AN=2;DP=385;set=Intersection	GT:AD:AF:DP	0/1:59,324:0.85:383
chr11	3115354	rs9795009	T	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	3124435	rs1542188	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=-0.505;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:182,25:0.12:207
chr11	3128448	rs3741354	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr11	3128915	rs3741351	T	C	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	3128945	rs58961916	G	A	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:17,117:0.87:134
chr11	3129027	rs3741350	G	A	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	3140627	rs11025457	C	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:9,42:0.82:51
chr11	3141530	rs34752531	C	G	8057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.63;ReadPosRankSum=-0.663;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:29,191:0.87:220
chr11	3141537	rs55862536	T	C	8411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.847;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=3.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.62;ReadPosRankSum=-0.734;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:31,212:0.87:243
chr11	3143030	rs6578322	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	3150482	rs11025526	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	3240107	rs61870496	A	C	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.225;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:91,26:0.22:117
chr11	3242833	rs7929163	G	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.365;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr11	3242933	rs10833491	C	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=5.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=1.684;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:214,48:0.18:262
chr11	3243346	rs11026004	C	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=1.130;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:89,24:0.21:113
chr11	3243367	rs12280457	G	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.591;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=6.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-1.617;SOR=0.137;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr11	3243427	rs12275900	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr11	3249039	rs34072539	A	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	3249552	rs4391795	C	T	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:26,121:0.82:147
chr11	3249984	rs12295710	C	T	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:36,171:0.83:207
chr11	3381798	rs369559162	GA	G	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.655;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr11	3381843	rs2157763	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=9.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-1.463;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr11	3382069	rs6578335	C	G	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	3382215	rs6578336	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.10;ReadPosRankSum=-1.611;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	3390006	rs7943767	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.133;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:119,21:0.15:140
chr11	3390173	rs1989786	A	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=1.593;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr11	3392351	rs2269735	T	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.459;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:179,29:0.14:208
chr11	3392357	rs2269734	T	G	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.305;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:162,27:0.14:189
chr11	3392972	rs2269732	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.309;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:288,46:0.14:334
chr11	3394894	rs10833820	G	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.306;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:266,49:0.16:315
chr11	3394960	rs10833821	A	G	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.331;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=6.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.049;SOR=0.185;set=HC	GT:AD:AF:DP	0/1:108,25:0.19:133
chr11	3398795	rs7932797	G	A	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	3400334	rs7931660	A	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.967;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr11	3400422	rs6578342	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.261;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr11	3661140	rs4910876	T	C	8679.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	3661585	rs3062849	A	ATGG	9842.73	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr11	3662892	rs72844325	G	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:7,43:0.86:50
chr11	3663011	rs932097	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-0.105;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:89,15:0.14:104
chr11	3663170	rs7111519	G	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	3681051	rs61998205	C	G	16187.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr11	3681115	rs35136756	A	G	19249.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr11	3681519	rs2280134	T	C	7591.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	3704704	rs7950171	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	3704770	rs12293627	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	3704775	rs35532049	CT	C	842.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	3723781	rs35404087	G	C	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr11	3733899	rs35803045	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-2.202;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr11	3735239	rs61879797	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=2.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.096;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:179,44:0.20:223
chr11	3740574	rs11029446	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr11	3742062	.	C	CAAA	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.067;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr11	3752727	rs61751339	T	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.102;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:62,18:0.23:80
chr11	3799985	rs188044	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	3800096	rs61896892	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.812;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=9.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.293;SOR=1.801;set=HC	GT:AD:AF:DP	0/1:126,17:0.12:143
chr11	3838910	rs7946577	G	C	1502.84	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:7,57:0.89:64
chr11	3838953	rs10835147	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	3839292	rs112928434	T	TAA	236.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=26.30;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	4103524	rs2304891	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	4104060	rs2898950	A	C	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	4104087	rs10767828	T	C	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	4104355	rs894455	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	4104745	rs2289570	C	G	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	4116335	rs12801088	A	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	4123345	rs1348310	C	G	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	4123427	rs232054	C	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:12,55:0.82:67
chr11	4128845	rs725518	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr11	4133317	rs56336381	C	A	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	4141132	rs183484	C	A	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:35,145:0.81:180
chr11	4153767	rs10835662	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	4159457	rs9937	A	G	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-1.520;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:19,60:0.76:79
chr11	4159466	rs1042858	G	A	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.35;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	4159764	rs1042919	A	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	4159770	rs866902	AT	A	272.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	4185463	rs979941	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.347;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr11	4185595	rs979942	T	G	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-2.576;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:171,26:0.13:197
chr11	4185766	rs7948314	G	A	450.82	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr11	4389404	rs11310407	AG	A	3275.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	4409511	rs12805578	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-2.487;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:136,22:0.14:158
chr11	4510285	rs96489	A	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=1.739;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:225,35:0.13:260
chr11	4510587	rs331510	C	T	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.198;QD=2.27;ReadPosRankSum=0.078;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:411,97:0.19:508
chr11	4562905	rs12420623	C	T	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:6,66:0.92:72
chr11	4562970	.	A	G	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=-5.010;QD=21.32;ReadPosRankSum=1.324;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:6,49:0.89:55
chr11	4562970	.	AT	GT	826	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=13;MMLQ=25;MQ=60.46;NF=0,22;NR=2,16;PP=45,826;QD=31.5;SC=TGTTCTTTAAATTTTATTTTA;SbPval=1.0;Source=Platypus;TC=25;TCF=7;TCR=18;TR=2,38;WE=4562978;WS=4562960;set=Platypus	GT:AD:AF:DP	0/1:4,38:0.90:42
chr11	4562970	.	AT	ATTTT	826	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=13;MMLQ=25;MQ=60.46;NF=0,22;NR=2,16;PP=45,826;QD=31.5;SC=TGTTCTTTAAATTTTATTTTA;SbPval=1.0;Source=Platypus;TC=25;TCF=7;TCR=18;TR=2,38;WE=4562978;WS=4562960;set=Platypus	GT:AD:AF:DP	0/1:23,2:0.08:25
chr11	4566377	rs2657168	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	4566711	rs2709182	C	T	5318.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	4567335	rs2657167	C	G	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	4592706	rs141600462	T	TAC	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.407;QD=0.97;ReadPosRankSum=0.050;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:97,18:0.16:115
chr11	4592708	rs71280817	C	CAG	2298.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:19,95:0.83:114
chr11	4593334	rs34520159	T	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr11	4593442	rs190317123	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,50:0.83:60
chr11	4594739	rs919519	C	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	4608542	rs1847632	C	T	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-0.898;QD=1.48;ReadPosRankSum=1.170;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:362,71:0.16:433
chr11	4615234	rs4910511	A	G	13913.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:112,618:0.85:730
chr11	4615390	rs2010722	C	T	6898.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	4621485	rs2231978	C	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	4622159	rs2231972	T	C	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	4623106	rs999818	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	4623788	rs931811	T	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr11	4624394	rs7943486	T	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:10,68:0.87:78
chr11	4624432	rs17314159	C	A	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:21,115:0.85:136
chr11	4703165	rs1123991	C	A	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	4712079	rs1505192	A	G	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.593;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:120,29:0.19:149
chr11	4713488	.	G	A	1119.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:6,44:0.88:50
chr11	4730985	rs4619142	C	T	11584.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr11	4731180	rs4432013	G	A	10061.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	4731468	rs4436535	G	A	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	4731583	rs4471413	C	T	7825.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	4790268	rs1030726	C	A	3970.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:31,169:0.84:200
chr11	4790308	rs1030725	A	G	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:32,157:0.83:189
chr11	4790396	rs17324609	G	A	3204.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:30,131:0.81:161
chr11	4790410	rs1030724	A	G	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:34,146:0.81:180
chr11	4790482	rs12792898	T	C	4709.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:50,193:0.79:243
chr11	4790575	rs12788102	A	G	5562.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:41,228:0.85:269
chr11	4790605	rs112024216	A	G	5192.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:43,212:0.83:255
chr11	4790671	rs11033795	C	T	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:27,175:0.87:202
chr11	4790758	rs11033796	G	A	5063.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:27,201:0.88:228
chr11	4790857	rs11033797	A	G	5805.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:21,228:0.92:249
chr11	4790873	rs34672924	CG	C	7918.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:23,221:0.91:244
chr11	4790948	rs11033800	C	A	8298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.360;QD=36.88;ReadPosRankSum=-0.546;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:24,201:0.89:225
chr11	4790951	rs11033801	A	G	8306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.189;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.351;QD=36.76;ReadPosRankSum=-0.986;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:23,203:0.90:226
chr11	4791111	rs17324812	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=1.277;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:177,25:0.12:202
chr11	4824878	rs2053116	A	C	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:27,150:0.85:177
chr11	4825010	rs6578533	T	A	6316.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:44,265:0.86:309
chr11	4825225	rs7941731	A	G	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:47,183:0.80:230
chr11	4827092	rs1865284	A	T	4607.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:46,187:0.80:233
chr11	4827283	rs919899	A	T	2951.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.68;ReadPosRankSum=-2.351;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:29,138:0.83:167
chr11	4827322	rs934485	A	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:18,66:0.79:84
chr11	4842866	rs35003053	A	G	4922.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:33,198:0.86:231
chr11	4843164	rs113211514	C	T	7383.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:49,313:0.86:362
chr11	4869649	rs12361955	G	A	4017.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:38,169:0.82:207
chr11	4869906	rs7117260	A	C	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	4870139	rs11602455	G	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:15,75:0.83:90
chr11	4870261	rs11602499	G	C	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:25,101:0.80:126
chr11	4870269	rs12417164	A	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.029;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:100,25:0.20:125
chr11	4870284	rs35918613	G	C	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:25,101:0.80:126
chr11	4880892	rs11034368	T	C	4464.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:30,191:0.86:221
chr11	4880992	rs7947547	C	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.022;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:143,27:0.16:170
chr11	4904209	rs17251220	A	G	586.81	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr11	4928841	rs7108225	T	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.459;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:287,43:0.13:330
chr11	4928866	rs7941509	C	T	7909.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:52,326:0.86:378
chr11	4936608	rs12419598	C	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.919;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:161,43:0.21:204
chr11	4944892	rs34583466	G	C	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:25,89:0.78:114
chr11	4944986	rs12796015	A	G	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:26,132:0.84:158
chr11	4945196	rs1378739	T	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.284;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.194;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:124,18:0.13:142
chr11	4945199	rs34742470	C	T	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:18,121:0.87:139
chr11	4945631	rs10836955	G	A	471.84	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr11	4964649	rs2595992	G	T	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	4964753	rs2605301	A	G	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	4964784	rs2605302	A	T	5150.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	4965239	rs2570581	G	T	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.05;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	4965301	rs2605303	G	T	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	4967468	rs28698374	G	A	10403.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr11	4967651	rs76895759	A	G	2921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.855;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=55.513;MLEAC=1;MLEAF=0.500;MQ=49.34;MQRankSum=-10.660;QD=16.32;ReadPosRankSum=-1.838;SOR=3.081;set=HC	GT:AD:AF:DP	0/1:64,115:0.64:179
chr11	4968198	rs3845246	C	A	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	4976086	rs2570572	C	T	7793.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	4976554	rs2595986	A	G	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	4976811	rs28482315	C	A	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	4977026	rs10837027	C	A	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:8,61:0.88:69
chr11	5013421	rs5789346	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=61.79;MQRankSum=2.074;QD=0.46;ReadPosRankSum=0.211;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:108,24:0.18:132
chr11	5013423	rs60905583	T	TG	1988.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:27,82:0.75:109
chr11	5020117	rs10837108	C	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr11	5020189	rs11035064	C	T	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:20,99:0.83:119
chr11	5020416	rs2445290	A	G	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	5020509	rs11035066	C	T	4591.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:48,187:0.80:235
chr11	5020799	rs10768448	C	T	6767.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:58,269:0.82:327
chr11	5020832	rs10768450	C	T	5875.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:49,238:0.83:287
chr11	5067984	rs2500016	A	G	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:28,129:0.82:157
chr11	5068137	rs2500017	G	A	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:36,196:0.84:232
chr11	5068177	rs2500018	A	T	5822.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:43,250:0.85:293
chr11	5068661	rs2500019	A	G	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:25,143:0.85:168
chr11	5079946	rs2445332	C	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	5080068	rs2500052	G	A	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:11,73:0.87:84
chr11	5080337	rs61746343	T	C	3988.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:32,173:0.84:205
chr11	5080844	rs16909440	T	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.382;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:220,35:0.14:255
chr11	5080930	rs1463385	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.831;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:153,27:0.15:180
chr11	5141876	rs10837373	G	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	5141902	rs10837374	T	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	5141980	rs4426129	A	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	5142134	rs11035760	C	T	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	5142270	rs10837375	T	G	8732.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	5142549	rs7947334	T	C	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	5142671	rs7944388	A	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.186;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:265,54:0.17:319
chr11	5172786	rs10768611	A	G	7924.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	5173149	rs77308879	C	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.591;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:158,26:0.14:184
chr11	5199222	rs7924390	A	C	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	5199340	rs113029548	A	AATGCCC	4180.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	5199645	rs6578560	T	C	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	5199660	rs6578561	T	C	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	5199675	rs6578562	C	T	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	5199708	rs6578563	T	A	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	5199817	rs5789371	GC	G	967.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	5221645	rs11512276	C	A,G	8069.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=332;set=Intersection	GT:AF:DP	1/2:0.80,0.20:330
chr11	5221825	rs11036212	G	A	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	5247141	rs1609812	G	A	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	5247733	rs7480526	A	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:10,59:0.86:69
chr11	5247791	rs10768683	C	G	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	5248243	rs713040	A	G	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	5263577	rs10128555	C	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	5269533	rs3841756	GT	G	5109.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:29,142:0.83:171
chr11	5269582	rs371855998	AG	A	11573.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.82;QD=46.11;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	5269584	rs1065686	T	A	11731.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.61;QD=45.83;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	5269586	rs371890964	A	AG	11771.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.38;QD=45.10;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	5269799	rs28440105	A	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.27;QD=43.06;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	5269806	rs28379094	C	T	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.01;QD=46.62;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	5270539	rs111624259	C	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.68;QD=28.78;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	5270686	rs1061234	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.66;QD=27.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	5274717	rs2070972	A	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.75;QD=31.81;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	5275802	rs141669845	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.54;QD=32.05;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	5289896	rs3061750	A	AAAAC	1674.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	5322737	rs10837771	A	G	7887.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	5323071	rs7118113	C	T	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	5344552	rs7934105	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	5344561	rs7933257	G	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.96;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	5344681	rs11036815	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.685;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:138,24:0.15:162
chr11	5344772	rs10742622	T	C	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	5344847	rs10768793	A	G	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	5344902	rs7937237	C	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	5345128	rs10837814	G	A	5585.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:63,230:0.78:293
chr11	5345170	rs7952293	A	G	7112.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	5345486	rs4910750	G	A	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	5364276	rs4910551	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.586;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.174;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:181,29:0.14:210
chr11	5364450	rs11036912	A	G	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.147;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:236,40:0.14:276
chr11	5364742	rs11036913	C	T	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:20,89:0.82:109
chr11	5364776	rs78253695	T	TGTC	1743.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr11	5372718	rs4494330	G	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.312;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr11	5372751	rs4910755	A	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.024;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:80,17:0.18:97
chr11	5372856	rs4910756	A	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.213;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:297,49:0.14:346
chr11	5373006	rs7483122	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.486;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:216,37:0.15:253
chr11	5373104	rs5006889	A	G	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.662;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.280;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:183,24:0.12:207
chr11	5373111	rs7479477	G	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.556;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.252;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:187,25:0.12:212
chr11	5373114	rs5006888	G	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.977;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:182,26:0.12:208
chr11	5373129	rs5006887	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.716;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:190,26:0.12:216
chr11	5373242	rs5006885	T	G	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-1.023;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:294,43:0.13:337
chr11	5373251	rs5006884	C	T	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.590;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:311,44:0.12:355
chr11	5373311	rs5006883	T	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-0.389;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:324,46:0.12:370
chr11	5373334	rs5006882	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.339;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:304,42:0.12:346
chr11	5373562	rs5024042	C	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.232;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:344,57:0.14:401
chr11	5373713	rs12802177	A	T	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:14,169:0.92:183
chr11	5373724	rs5024040	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-0.932;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:152,13:0.08:165
chr11	5373728	rs5024039	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-1.271;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:149,13:0.08:162
chr11	5373738	rs5024038	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.312;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:134,11:0.08:145
chr11	5410934	rs1498467	T	G	10954.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	5410956	rs143743236	C	A	7040.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:47,276:0.85:323
chr11	5411031	rs1498468	C	T	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	5411239	rs1498469	T	C	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	5411395	rs9783355	C	A	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.44;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	5411395	.	CTCT	ATCG,ATCT	2500	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=15,100;NR=16,79;PP=199,2500;QD=8.14412499556;SC=TGCACCGCTCCTCTCTGTGCT;SbPval=0.31;Source=Platypus;TC=179;TCF=100;TCR=79;TR=31,179;WE=5411406;WS=5411385;set=Platypus	GT:AF:DP	0/1:0.17:179
chr11	5411398	rs2736531	T	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.495;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:158,33:0.17:191
chr11	5411579	rs10768906	GT	AC	8945.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	5423775	rs7481498	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=6.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.905;SOR=0.076;set=HC	GT:AD:AF:DP	0/1:63,8:0.11:71
chr11	5423779	rs2736527	G	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.593;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=9.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.660;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr11	5424050	rs1909262	G	A	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-2.986;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:331,70:0.17:401
chr11	5424430	rs7929412	A	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.955;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:398,68:0.15:466
chr11	5443442	rs2736590	G	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=1.032;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:303,46:0.13:349
chr11	5443700	rs2736588	C	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.159;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:275,54:0.16:329
chr11	5443739	rs2736587	T	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.637;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.476;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:233,39:0.14:272
chr11	5443867	rs10838092	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.094;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:255,41:0.14:296
chr11	5443887	rs10838093	T	C	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.685;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:259,41:0.14:300
chr11	5443893	rs10838094	G	A	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.584;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:263,47:0.15:310
chr11	5443963	rs10838095	G	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=1.063;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:242,45:0.16:287
chr11	5444061	rs2736586	G	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.293;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:199,35:0.15:234
chr11	5444136	rs2647574	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=10.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.084;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:218,41:0.16:259
chr11	5444353	rs2647573	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.041;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:93,15:0.14:108
chr11	5451875	rs1498474	G	A	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:20,110:0.85:130
chr11	5452418	rs1566278	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.090;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr11	5461991	rs1498486	C	A	4316.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:33,173:0.84:206
chr11	5462085	rs11037444	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.048;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:166,38:0.19:204
chr11	5462255	rs11037445	C	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.930;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:111,31:0.22:142
chr11	5475118	rs12577167	A	G	6387.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:53,240:0.82:293
chr11	5490077	rs2736569	A	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	5510284	rs417425	A	G	7597.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr11	5510341	rs404280	C	T	6075.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:55,250:0.82:305
chr11	5510497	rs2467219	T	C	7082.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	5510540	rs146317894	G	GGGCT	1032.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.170;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:201,40:0.17:241
chr11	5510598	rs7950082	A	T	5798.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:44,236:0.84:280
chr11	5510626	rs444878	T	C	8367.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	5510928	rs392296	G	A	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	5511003	rs426886	G	A	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	5529152	rs2234455	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.128;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:257,43:0.14:300
chr11	5529865	rs186434	G	A	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	5536415	rs10769023	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.501;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:127,19:0.13:146
chr11	5536537	rs393044	A	C	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	5536852	rs2017434	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-1.481;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:157,21:0.12:178
chr11	5537245	rs3802978	G	T	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:6,91:0.94:97
chr11	5549254	rs1498480	T	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.313;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr11	5549316	rs1846317	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.800;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:135,22:0.14:157
chr11	5549531	rs1560811	T	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-0.142;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr11	5566030	rs1995158	A	G	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.448;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:168,31:0.16:199
chr11	5566051	rs1995157	C	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.159;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:184,28:0.13:212
chr11	5566112	rs1995156	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.000;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.250;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:161,25:0.13:186
chr11	5566365	rs1566275	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-0.884;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:172,26:0.13:198
chr11	5566489	rs10769054	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=4.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-1.624;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:169,25:0.13:194
chr11	5566830	rs10838299	A	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr11	5602968	rs10769086	G	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.991;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:150,45:0.23:195
chr11	5617987	rs12272467	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr11	5618298	rs146384026	A	ATTTTAT	652.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr11	5625847	rs3751006	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.099;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:80,12:0.13:92
chr11	5631479	rs3740999	A	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.224;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr11	5631622	rs7125403	G	T	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	5632212	rs10769124	G	A	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr11	5653417	rs4287358	AT	GA	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	5655150	rs7941976	T	A	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	5655233	rs3824951	G	A	1034.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.11;ReadPosRankSum=1.169;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:5,44:0.90:49
chr11	5655722	.	TACACAC	T	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.033;QD=14.99;ReadPosRankSum=0.337;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr11	5655754	.	CACACACAT	C	623	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=2;MGOF=19;MMLQ=23;MQ=59.9;NF=12;NR=14;PP=623;QD=24.0769230769;SC=CACACACACACACACACATAT;SbPval=0.36;Source=Platypus;TC=47;TCF=25;TCR=22;TR=26;WE=5655771;WS=5655744;set=Platypus	GT:AD:AF:DP	0/1:21,26:0.55:47
chr11	5662319	rs7108834	C	T	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	5663920	rs66637086	CT	C	2712.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	5664356	rs59472811	T	TATATATA	1097.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;QD=43.91;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	5664831	rs3740998	C	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.630;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:237,41:0.15:278
chr11	5664974	rs7109861	T	C	9450.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr11	5687320	rs35734937	T	TA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=0.76;ReadPosRankSum=2.278;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr11	5691191	rs4309185	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	5700340	rs3740995	T	C	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	5701409	rs3824949	G	C	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	5719667	rs2291842	T	C	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:14,62:0.82:76
chr11	5730248	rs999295	A	G	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr11	5755605	rs1498552	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	5757785	rs12792180	C	T	5046.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:46,208:0.82:254
chr11	5758062	rs7397032	T	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.848;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:236,46:0.16:282
chr11	5758118	rs7396766	A	C	9623.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	5776287	rs7936512	C	T	9937.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr11	5776470	rs7394584	T	G	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	5776610	.	C	A	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.678;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:200,41:0.17:241
chr11	5776623	rs7396938	A	T	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	5777023	rs10742782	C	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	5777053	rs10742783	A	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	5809308	rs7934670	A	T	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	5809548	rs7948009	G	A	5774.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:1,217:1.00:218
chr11	5810105	rs61619938	TA	T	543.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	5841856	rs4758435	C	T	9518.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr11	5842310	rs8181529	T	G	9420.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:1,322:1.00:323
chr11	5842356	rs8181512	A	G	11734.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr11	5862608	.	G	T	1413.77	.	AC=1;AF=0.500;AN=2;DP=227;set=Intersection	GT:AD:AF:DP	0/1:155,72:0.32:227
chr11	5877909	rs12417880	C	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	5877979	rs12419602	T	A	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	5905412	rs17233457	C	T	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	5906048	rs4758168	G	A	8970.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	5906073	rs4757986	G	T	8793.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,306:1.00:307
chr11	5906143	rs11823809	T	C	10743.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	5906192	rs1453435	A	C	14765.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr11	5906203	rs11823828	T	G	16684.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr11	5906291	rs11823842	T	C	16881.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr11	5922110	.	C	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.355;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:174,34:0.16:208
chr11	5922222	rs10160336	T	C	8529.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	5922707	rs7106300	C	T	7080.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	5923297	rs4601752	A	G	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	5968728	rs1840178	T	C	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	6007272	rs4237768	A	G	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	6007613	rs4354673	T	G	7080.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	6007680	rs4436524	A	G	8388.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	6007743	rs4436525	A	G	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	6079001	rs4448669	G	A	6960.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:61,300:0.83:361
chr11	6079028	rs61735897	C	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.459;QD=1.68;ReadPosRankSum=1.350;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:280,57:0.17:337
chr11	6129837	rs1462983	C	T	7135.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:67,288:0.81:355
chr11	6150738	rs325637	A	G	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,47:0.77:61
chr11	6173346	rs11826453	G	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.981;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:267,61:0.19:328
chr11	6173364	rs325695	T	A	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr11	6220376	rs325610	G	C	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	6221169	rs10839531	A	G	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	6221214	rs11040799	T	A	8542.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	6221427	rs12417049	T	C	5357.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:43,224:0.84:267
chr11	6227083	rs10742968	C	T	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	6231731	rs10769671	C	T	10315.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	6239344	rs3750944	G	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.587;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:108,28:0.21:136
chr11	6243804	rs3750945	A	G	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	6243843	rs3750946	C	G	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	6243963	rs3750947	G	A	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	6243982	rs325606	T	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr11	6281108	rs2929180	T	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	6281400	rs11040819	T	C	7839.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	6292837	rs10839535	CG	GA	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	6340525	rs12570	A	T	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	6340706	rs1051992	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.653;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:286,49:0.15:335
chr11	6341365	rs11544764	C	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:13,92:0.88:105
chr11	6341684	rs2682123	C	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	6411935	rs3838786	TGCTGGC	T,CGCTGGC	4850.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=272;set=Intersection	GT:AF:DP	1/2:0.22,0.74:219
chr11	6416959	rs1800606	C	T	11996.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr11	6423063	rs77776071	G	A	6576.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:37,275:0.88:312
chr11	6453332	rs17242666	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr11	6459838	rs10500670	C	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:22,108:0.83:130
chr11	6462087	rs35862450	G	A	3731.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:46,162:0.78:208
chr11	6477176	rs139873545	TTAAGGAACGGTACTATCTG	T	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr11	6477455	rs13343175	C	T	7042.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:67,301:0.82:368
chr11	6477831	rs10606	C	T	5893.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:59,246:0.81:305
chr11	6478384	rs11605141	C	T	1832.31	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:7,65:0.90:72
chr11	6478619	rs16913748	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:16,75:0.82:91
chr11	6486945	rs74053396	C	T	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:23,96:0.81:119
chr11	6499215	rs2303493	A	G	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:12,81:0.87:93
chr11	6500309	rs2253104	A	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr11	6502636	rs11600431	G	C	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:10,60:0.86:70
chr11	6502727	rs11604726	C	G	6026.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:40,244:0.86:284
chr11	6502780	rs11555935	C	A	8082.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:55,332:0.86:387
chr11	6519642	rs11604149	G	A	4830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=4.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.25;ReadPosRankSum=0.643;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:34,217:0.86:251
chr11	6520015	rs11040899	G	T	3536.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:31,142:0.82:173
chr11	6520164	rs2555158	T	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:11,70:0.86:81
chr11	6520346	rs10769693	C	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.38;ReadPosRankSum=1.221;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	6524072	rs11605196	A	C	1805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=0.844;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:24,82:0.77:106
chr11	6524253	rs11603067	C	T	428.80	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr11	6530106	rs11605607	A	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr11	6532778	rs17244263	A	T	1082.56	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:4,42:0.91:46
chr11	6541225	rs11603869	C	G	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:33,162:0.83:195
chr11	6541580	rs2555143	T	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:7,50:0.88:57
chr11	6549664	.	TGTAC	T	51.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.214;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr11	6549667	rs4623884	A	G	290.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=-0.497;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr11	6549667	.	AC	GT	380	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=4;MGOF=16;MMLQ=21;MQ=60.0;NF=10;NR=4;PP=380;QD=30.9619910616;SC=GTGTGTGTGTACACACACTGA;SbPval=0.84;Source=Platypus;TC=33;TCF=20;TCR=13;TR=14;WE=6549676;WS=6549654;set=Platypus	GT:AD:AF:DP	0/1:19,14:0.42:33
chr11	6549668	rs4296019	C	T	290.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=-0.466;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr11	6549779	rs4633449	A	C	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	6549995	rs7480644	A	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	6550004	rs2344828	A	G	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	6550309	rs2344829	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	6554941	rs4282961	C	A	4608.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:37,182:0.83:219
chr11	6555365	rs7103810	A	G	11234.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr11	6560141	rs11040914	A	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	6561270	rs10839577	A	G	6425.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:44,268:0.86:312
chr11	6567895	rs11270441	C	CTGCCCTACTGCA	6103.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	6568213	rs58186801	T	C	6412.90	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:40,273:0.87:313
chr11	6579106	rs11040920	C	A	4919.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:35,205:0.85:240
chr11	6579539	rs10839583	A	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:11,46:0.81:57
chr11	6585007	rs11040923	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=8.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.468;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:161,35:0.18:196
chr11	6585502	rs7107072	T	C	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	6587252	rs12292436	C	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:10,76:0.88:86
chr11	6588228	rs10769699	G	A	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:37,133:0.78:170
chr11	6591157	rs10839585	A	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.482;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=9.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.845;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr11	6621516	rs11040933	G	A	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:24,110:0.82:134
chr11	6622714	rs2288283	G	A	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	6629530	rs2048092	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.297;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:100,23:0.19:123
chr11	6630028	rs11314683	TC	T	22290.73	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:1,684:1.00:685
chr11	6630833	rs1043390	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.681;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:119,20:0.14:139
chr11	6632349	rs2555174	C	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.687;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr11	6632857	rs1876300	A	T	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:13,97:0.88:110
chr11	6636106	rs1128396	T	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-0.530;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:78,17:0.18:95
chr11	6637518	rs7943955	A	G	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	6637739	.	ATT	A,AT	840.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.077;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.584;QD=10.64;ReadPosRankSum=0.413;SOR=0.524;set=HC	GT:AD:AF:DP	1/2:16,35,28:0.44,0.35:79
chr11	6638506	rs1800738	A	T	4399.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:31,190:0.86:221
chr11	6646108	rs10458926	T	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.267;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:88,17:0.16:105
chr11	6647931	rs34782445	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=1.366;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:167,37:0.18:204
chr11	6647978	rs4442534	C	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.916;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:196,45:0.19:241
chr11	6648424	rs4758443	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.418;SOR=1.272;set=HC	GT:AD:AF:DP	0/1:146,21:0.13:167
chr11	6651810	rs2659872	A	G	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-1.522;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:145,29:0.17:174
chr11	6652618	rs2659871	C	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.676;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:451,81:0.15:532
chr11	6655332	rs2659869	T	A	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.264;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:550,103:0.16:653
chr11	6655433	rs997263	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.623;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:336,49:0.13:385
chr11	6703892	rs1567135	T	G	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr11	6737979	rs11040982	T	C	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=5.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=1.364;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:281,63:0.18:344
chr11	6739109	rs7112561	G	A	9762.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:1,349:1.00:350
chr11	6739407	rs12284429	A	G	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	6739814	rs7114441	C	T	15802.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr11	6739822	rs7102825	T	C	16169.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	6740308	rs12223353	C	T	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	6741400	.	A	C	63.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr11	6789207	rs72914876	G	C	3026.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:31,135:0.81:166
chr11	6789530	rs202059894	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.713;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:128,21:0.14:149
chr11	6789929	rs11828782	C	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:14,82:0.85:96
chr11	6790106	rs7102536	T	C	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	6806181	rs17264523	A	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr11	6806496	rs11041022	T	C	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:31,113:0.78:144
chr11	6806827	rs2659880	G	T	8266.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:66,345:0.84:411
chr11	6807163	rs2659879	C	G	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:26,167:0.87:193
chr11	6807243	rs497681	G	A	5046.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	6807330	rs11041023	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=6.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-1.359;SOR=0.159;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr11	6816778	rs866347	A	G	8590.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	6816875	rs7122644	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.210;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:147,31:0.17:178
chr11	6866815	rs2741801	C	T	2168.18	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:10,82:0.89:92
chr11	6866834	rs2595439	T	C	2711.88	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:14,112:0.89:126
chr11	6867894	rs7105094	T	C	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-0.211;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:130,29:0.18:159
chr11	6891385	rs2741764	G	A	10590.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:90,454:0.83:544
chr11	6891704	rs10839632	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.388;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:614,107:0.15:721
chr11	6898495	rs2595453	T	C	6309.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:29,249:0.90:278
chr11	6898663	rs10839635	G	A	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.824;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:206,47:0.19:253
chr11	6913127	rs2741804	A	G	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:25,149:0.86:174
chr11	6913244	rs1965208	A	G	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	6942476	rs10839658	C	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.716;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:293,49:0.14:342
chr11	6942628	rs11605995	A	C	5763.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:33,246:0.88:279
chr11	6942952	rs2035844	T	C	5098.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:33,214:0.87:247
chr11	6943254	rs1388535	C	T	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:17,105:0.86:122
chr11	6953858	rs11041108	A	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.847;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:142,28:0.16:170
chr11	6962971	rs10839663	C	T	1177.10	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:6,47:0.89:53
chr11	6965012	rs2515947	C	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.52;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	6976988	rs2239731	A	T	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	7022160	rs2857919	A	G	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	7022360	rs2239734	A	C	9079.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:82,379:0.82:461
chr11	7022531	rs1156525	A	T	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.316;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:181,41:0.18:222
chr11	7022717	rs1156526	T	C	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-1.670;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:202,44:0.18:246
chr11	7059960	rs12801277	A	C	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	7063755	rs7123944	C	T	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	7070866	rs1552727	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-1.524;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:66,9:0.12:75
chr11	7071031	rs1552726	G	A	8764.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	7079038	rs10839708	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.239;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:185,27:0.13:212
chr11	7110363	rs4758158	G	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.434;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:219,52:0.19:271
chr11	7110751	rs11041171	A	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	7324475	rs4412741	T	C	11996.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr11	7335424	rs2035639	C	G	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	7439093	rs4757993	G	T	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr11	7598952	rs6578880	C	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:8,47:0.85:55
chr11	7614492	rs7115173	A	G	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	7614531	rs7129888	C	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	7619518	rs4758206	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	7642031	rs10769813	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=1.774;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:57,10:0.15:67
chr11	7642407	rs10839822	T	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	7647266	.	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.739;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr11	7649679	rs151109267	A	AT	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.399;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:125,21:0.14:146
chr11	7650607	rs6578887	A	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=1.182;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:180,32:0.15:212
chr11	7662361	rs10839829	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.405;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr11	7662732	rs4643071	C	T	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	7663726	rs4402283	T	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	7663779	rs3861066	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.269;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr11	7670160	rs4421737	T	C	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=6.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.504;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:184,37:0.17:221
chr11	7670249	rs4237757	A	G	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	7670305	rs4758008	C	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=17.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=1.535;SOR=1.490;set=HC	GT:AD:AF:DP	0/1:96,22:0.19:118
chr11	7670353	rs4758009	A	C	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	7670440	rs4758209	A	G	8292.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	7670943	rs10839831	G	A	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:20,107:0.84:127
chr11	7671974	rs11041497	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.647;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr11	7672272	rs3923491	G	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	7673015	rs5864	G	A	8913.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	7673099	rs11041498	T	C	2828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.083;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.78;ReadPosRankSum=-2.203;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:16,73:0.82:89
chr11	7673106	rs11041499	T	C	2712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.140;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.49;ReadPosRankSum=-1.492;SOR=2.777;set=HC	GT:AD:AF:DP	0/1:16,65:0.80:81
chr11	7686584	rs1128627	A	T	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:31,100:0.76:131
chr11	7686596	rs13172	G	A	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;MQ=60.55;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	7686602	rs16411	G	GTGTT	5789.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	7686674	rs13854	T	C	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	7686810	rs55826178	C	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr11	7686915	rs11041521	T	A	855.78	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:3,32:0.91:35
chr11	7686959	rs11041522	A	G	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:15,70:0.82:85
chr11	7686970	rs55635523	T	C	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:19,87:0.82:106
chr11	7687215	rs113239745	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.296;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:77,16:0.17:93
chr11	7687265	rs59114959	A	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr11	7687669	rs12796110	A	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	7687715	rs12801394	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	7687863	rs62620008	C	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:11,65:0.86:76
chr11	7687913	rs72851388	C	T	896.18	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:5,37:0.88:42
chr11	7689633	rs10743030	A	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	7690685	rs4631871	T	C	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	7693853	rs57207415	GCA	G,GCACACACA	2840.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=121;set=Intersection	GT:AF:DP	1/2:0.31,0.65:94
chr11	7694013	rs11041525	T	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-1.473;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:172,41:0.19:213
chr11	7710729	rs4505055	C	G	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:10,61:0.86:71
chr11	7710742	rs4365041	A	T	2679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.143;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.80;ReadPosRankSum=0.368;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:13,64:0.83:77
chr11	7710750	rs4277100	G	A	2904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.503;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.64;ReadPosRankSum=-0.556;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:13,76:0.85:89
chr11	7710877	rs4503519	C	T	6035.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:53,261:0.83:314
chr11	7712471	rs4509745	C	T	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:18,124:0.87:142
chr11	7716549	rs4287332	C	G	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	7716855	rs4528317	T	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	7720159	rs60610878	C	CT	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	7720426	rs4367936	C	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	7720453	rs35619418	A	AGG	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr11	7721743	rs12279973	C	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	7721870	rs10839849	G	A	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	7723171	rs5789540	GA	G	2581.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	7723683	rs4373911	G	A	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	7725092	rs3924747	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.166;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:77,12:0.13:89
chr11	7725173	rs3924748	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=6.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-2.293;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:187,30:0.14:217
chr11	7727872	rs12289558	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.111;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:101,19:0.16:120
chr11	7727886	rs7927138	C	T	2089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.53;ReadPosRankSum=0.953;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:17,90:0.84:107
chr11	7794545	rs1482784	C	A	5867.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:58,239:0.80:297
chr11	7794650	rs371799	G	C	4719.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:64,208:0.76:272
chr11	7794976	rs980145	T	A	6839.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:51,286:0.85:337
chr11	7817665	rs72484720	T	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.135;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:178,31:0.15:209
chr11	7817852	rs76615008	C	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-1.318;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:367,41:0.10:408
chr11	7817856	rs78460198	C	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.155;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-1.302;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:378,42:0.10:420
chr11	7817959	rs73406603	G	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.538;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:287,53:0.16:340
chr11	7818056	rs73406604	T	C	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.339;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:207,52:0.20:259
chr11	7818151	rs73406606	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=5.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.199;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:214,42:0.16:256
chr11	7818190	rs73406607	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=4.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.678;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:197,33:0.14:230
chr11	7818383	rs138967151	G	GATATGGTTACCAGGTAGATGC	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.749;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:217,18:0.08:235
chr11	7847208	rs1482791	T	C	7302.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:60,290:0.83:350
chr11	7847466	rs1482792	A	G	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.58;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	7847466	.	AGATAAC	GGATAAC,GGATAAT	1069	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=37,23;NR=54,42;PP=194,1069;QD=2.51396936865;SC=TAGTATCCTCAGATAACCCCA;SbPval=0.52;Source=Platypus;TC=91;TCF=37;TCR=54;TR=91,65;WE=7847480;WS=7847456;set=Platypus	GT:AF:DP	0/1:1.00:91
chr11	7847472	rs1482793	C	T	1735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=11.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.36;ReadPosRankSum=-0.220;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:28,72:0.72:100
chr11	7847523	rs1482794	T	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr11	7870670	rs61759825	A	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.213;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:124,27:0.18:151
chr11	7870760	rs17221305	G	A	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.189;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.413;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:234,49:0.17:283
chr11	7871011	rs4758022	A	G	10596.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr11	7960045	rs6578915	G	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	7981130	rs148579969	AT	A	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.347;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:67,11:0.14:78
chr11	7981521	rs11608118	C	T	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:28,130:0.82:158
chr11	8009420	rs12278319	G	A	271.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	8013450	rs7941782	C	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.124;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr11	8013478	rs77896992	CATAA	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.938;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr11	8014479	rs4758267	C	T	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:27,149:0.85:176
chr11	8016730	rs1105984	T	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.870;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:111,28:0.20:139
chr11	8061100	rs10769865	C	T	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	8103104	rs11041733	G	T	6801.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.413;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=3.026;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.10;ReadPosRankSum=-1.273;SOR=0.107;set=HC	GT:AD:AF:DP	1/1:2,269:0.99:271
chr11	8111540	rs2272382	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	8115699	rs4758289	T	C	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:35,115:0.77:150
chr11	8115762	rs7396690	C	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	8117228	rs11041739	A	G	7316.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	8118103	rs2242501	A	G	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	8118116	rs2242502	A	G	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	8118185	rs10160258	C	G	5767.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	8118200	rs7931842	C	A	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	8119063	rs7950355	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	8122185	.	A	ATCCTAGTCTCTGCATGAGCTTCTAAGGGCAGAACTCCAGCTG	2563.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=42.73;ReadPosRankSum=-0.214;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:15,45:0.75:60
chr11	8122234	rs7394561	G	A	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	8122242	rs138755629	A	AG	1866.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:19,67:0.78:86
chr11	8246343	rs3816490	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.702;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=9.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=2.803;SOR=1.925;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr11	8248440	rs2290451	C	G	715.78	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:3,31:0.91:34
chr11	8248482	rs2290450	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:9,55:0.86:64
chr11	8284838	rs204931	A	G	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	8284981	rs176083	A	C	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	8284995	rs204929	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	8285124	rs2071458	A	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	8290164	rs7943479	C	G	517.41	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr11	8457237	rs10769907	G	A	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	8483335	rs1900273	G	A	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:26,119:0.82:145
chr11	8486310	rs1446464	C	A	3874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.716;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.615;QD=19.87;ReadPosRankSum=0.081;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:30,165:0.85:195
chr11	8496516	rs2289923	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.663;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr11	8639325	rs4929924	G	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	8641501	rs7946508	C	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	8641882	rs7943945	G	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	8642218	rs7950166	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	8644530	rs4929948	T	G	7734.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	8644562	rs10533257	TCATA	T	6919.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	8646237	rs12803166	G	T	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	8662090	rs11042022	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.70;SOR=6.666;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	8662516	rs11042023	T	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	8669437	rs10840100	A	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	8670172	rs7950801	T	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	8704965	rs2073684	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr11	8705528	rs61875926	C	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-1.039;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:201,36:0.15:237
chr11	8706406	rs4670	T	G	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:25,161:0.87:186
chr11	8716968	rs2270955	T	A	9045.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:56,392:0.88:448
chr11	8717003	rs2270956	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.15;ReadPosRankSum=0.875;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:433,60:0.12:493
chr11	8719532	rs188302493	A	C	3960.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.871;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.29;ReadPosRankSum=-0.554;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:21,165:0.89:186
chr11	8719615	rs10840113	C	G	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	8721613	rs6483727	G	T	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=7.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.43;ReadPosRankSum=1.624;SOR=2.410;set=HC	GT:AD:AF:DP	0/1:9,44:0.83:53
chr11	8721616	rs6483729	G	A	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.991;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=6.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.44;ReadPosRankSum=1.049;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:7,43:0.86:50
chr11	8732299	.	GGCACAC	G	89.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=-0.570;QD=1.99;ReadPosRankSum=-0.593;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr11	8732300	.	G	GCACA	603.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.000;QD=22.36;ReadPosRankSum=0.578;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr11	8735662	rs931756	G	A	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	8736046	rs931757	C	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	8751889	rs3794153	C	G	9662.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	8788168	rs10743089	A	T	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	8788225	rs10734637	A	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	8797684	.	CACGT	C	350.74	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=43.84;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	8797693	.	GCA	G	350.74	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=38.97;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	8797703	.	G	GCACACACACACACACA	354.74	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=39.42;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	8797705	rs151193662	G	A	364.78	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	8797707	rs145618051	G	A	995.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.83;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	8933853	rs2742519	T	G	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	8934101	rs2742518	A	G	8496.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	8938787	rs2016942	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	8942999	rs2568023	G	A	9040.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	8946950	rs3751068	G	T	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	8947021	rs2653588	A	G	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	8947283	rs3751066	G	C	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	8948680	rs3751065	A	T	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	8959511	rs4910179	T	G	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	8959545	rs4909951	C	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	8970083	rs2653604	C	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	8977691	rs2742488	C	G	4242.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	8977707	rs2568069	G	A	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	9001289	rs71062805	TA	T	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=0.887;QD=10.82;ReadPosRankSum=-0.189;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr11	9001452	rs141819238	C	CT	266.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.98;QD=33.34;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	9001472	rs2653610	G	T	211.82	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.34;QD=30.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	9005036	rs2568046	T	A	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	9051385	rs7479998	C	A	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	9052423	rs7395988	A	C	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	9072140	rs3751052	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=1.716;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:111,18:0.14:129
chr11	9081926	rs7112378	C	T	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	9087533	rs2003906	A	G	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:36,154:0.81:190
chr11	9096189	rs7930311	G	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=4.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=1.474;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:206,33:0.14:239
chr11	9112020	rs7484187	T	A	139.03	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	9113008	rs142900716	GGCA	G	1215.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr11	9164437	rs74643810	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr11	9167399	rs10732517	T	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	9192336	rs10550560	TAC	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.198;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr11	9198276	rs7394878	T	C	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:17,121:0.88:138
chr11	9199650	rs60693427	C	T	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:24,115:0.83:139
chr11	9228785	rs7396439	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,51:0.72:71
chr11	9304939	rs1136330	T	C	570.84	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr11	9307951	rs76581517	G	A	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:29,109:0.79:138
chr11	9309405	rs5014247	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.608;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr11	9310114	rs75446893	A	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr11	9310153	rs144571752	G	GA	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr11	9316937	rs4601780	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	9321399	rs10743101	A	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr11	9336071	rs4325312	A	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.095;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:138,31:0.18:169
chr11	9336140	rs116886507	C	T	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:13,58:0.82:71
chr11	9406349	rs4606477	T	C	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	9450377	rs2290423	T	G	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:21,132:0.86:153
chr11	9455374	rs4910052	T	C	278.56	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr11	9459912	rs149988366	G	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr11	9493100	rs7119680	G	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.13;ReadPosRankSum=0.000;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	9494461	.	CT	C	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.749;QD=3.29;ReadPosRankSum=1.515;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:44,27:0.38:71
chr11	9516186	rs12293264	T	C	1515.81	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:8,64:0.89:72
chr11	9519420	rs10840249	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr11	9537904	rs10743108	G	C	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	9537978	rs12276181	A	G	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,6:0.18:34
chr11	9549142	rs11607631	G	A	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:24,131:0.85:155
chr11	9595732	rs11042428	C	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.92;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	9734945	rs1390679	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	9746137	rs419412	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	9746201	rs1695613	G	A	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	9746552	rs1960386	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	9748483	rs2453831	T	C	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	9748620	rs2453832	G	T	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.12;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	9748624	rs2454612	C	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.14;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	9749552	rs67364105	CT	C	1438.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	9749554	rs56116109	T	G	1447.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	9749645	rs397686	A	C	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	9751089	rs12360647	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	9754221	rs360157	C	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	9759608	rs93139	T	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	9759713	rs93138	T	G	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	9759918	rs173396	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	9769562	rs415895	C	G	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	9771687	rs6483656	G	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	9802228	rs360124	G	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	9802952	rs3763862	A	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	9811039	rs11042496	C	A	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	9812236	rs2645029	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	9830732	rs10770066	A	T	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	9853777	rs12574508	G	C	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.886;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=0.000;SOR=3.215;set=HC	GT:AD:AF:DP	0/1:8,43:0.84:51
chr11	9861009	rs7483882	G	A	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	9875353	rs375686	G	T	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	9878332	rs11322743	AT	A	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=6.026;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-0.709;QD=7.62;ReadPosRankSum=0.110;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr11	9879838	rs7102464	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.362;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:140,35:0.20:175
chr11	9917620	rs4910073	G	C	1838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.68;ReadPosRankSum=0.526;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:24,80:0.77:104
chr11	9983738	rs7117364	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:59,20:0.25:79
chr11	9983810	rs35824679	A	AC	252.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr11	10024311	rs10500716	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=2.224;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr11	10215598	rs4910097	C	T	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:14,71:0.84:85
chr11	10472492	rs35417007	GC	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.058;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:77,11:0.12:88
chr11	10500056	rs73409951	T	C	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:45,161:0.78:206
chr11	10503440	rs79076848	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr11	10503451	rs73409956	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr11	10503756	rs16907852	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr11	10518289	rs1466426	T	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	10521764	rs3741041	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.528;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:216,36:0.14:252
chr11	10521850	rs3741039	G	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.226;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:81,20:0.20:101
chr11	10522978	rs10840430	G	T	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:8,56:0.88:64
chr11	10525919	rs11826750	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	10526060	rs7943804	C	T	6894.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	10526220	rs74967248	C	T	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:20,120:0.86:140
chr11	10553672	rs4910154	C	T	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	10553675	rs4910155	C	T	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	10555589	rs1065052	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.717;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:198,46:0.19:244
chr11	10603648	rs2288236	A	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.102;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr11	10614911	rs3741033	C	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.07;ReadPosRankSum=0.365;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr11	10631247	rs3741042	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.954;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:92,23:0.20:115
chr11	10645289	rs61892975	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.040;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr11	10645569	rs2303402	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.912;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr11	10647702	rs2241489	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=0.059;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:128,32:0.20:160
chr11	10649161	rs1425152	C	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.851;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:206,32:0.13:238
chr11	10650329	rs2278125	C	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.165;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:128,45:0.26:173
chr11	10653554	.	G	A	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=-1.314;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:10,38:0.79:48
chr11	10653729	rs3741032	C	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=2.253;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr11	10653737	.	CTT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.645;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr11	10655609	rs2162044	C	T	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	10673739	rs4909945	T	C	6520.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	10786023	rs3830388	A	AAGTTG	3904.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	10786142	rs3736326	C	T	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	10795431	rs11386264	C	CA	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.920;QD=6.88;ReadPosRankSum=1.367;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,32:0.63:51
chr11	10797276	rs72259410	CTTTCTT	C	613.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=40.92;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	10820663	.	TAA	T,TAAA	905.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=3.052;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.691;QD=7.02;ReadPosRankSum=0.000;SOR=1.068;set=HC	GT:AD:AF:DP	1/2:35,28,66:0.22,0.51:129
chr11	10821055	rs3736327	C	T	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:21,98:0.82:119
chr11	10822202	rs4910190	G	A	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:23,128:0.85:151
chr11	10822350	rs7951708	C	T	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	10823079	rs10840492	T	C	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,52:0.81:64
chr11	10823576	.	C	CACACTCCTAAAATAGTTTCATGTTTTAATAGCAAATGAAATCACATATATTGCAGAATTTAACATTTGTTGCCTAA,CACACTCCTAAAATAGTTTCATGTTTTAATAGCAAATGAAATCACATATATTGCATAATTTAACATTTGTTGCCTAA	3487.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=1162.58;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:0,1,2:0.33,0.67:3
chr11	10823815	rs7105210	C	T	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	10824540	rs10743150	G	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	10824731	rs2270620	C	T	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:35,136:0.80:171
chr11	10826341	rs2242360	A	G	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr11	10827418	rs11042964	T	C	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:30,174:0.85:204
chr11	10828361	rs10743151	C	A	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:30,115:0.79:145
chr11	10828490	rs11373962	T	TA	1669.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	10830106	rs7127279	A	G	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	11292635	rs12282251	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr11	11292700	rs10831567	G	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:64,23:0.26:87
chr11	11292859	rs12282460	G	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=1.175;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:127,18:0.12:145
chr11	11292864	rs12282401	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.935;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:123,19:0.13:142
chr11	11314538	rs10437598	C	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.104;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:99,34:0.26:133
chr11	11354393	rs901554	A	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	11373508	rs7948121	T	C	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	11373587	rs7945066	A	G	9251.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	11373635	rs1056963	C	T	13054.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr11	11373808	rs1056951	T	G	7373.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	11373925	rs4243927	A	C	13048.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:1,481:1.00:482
chr11	11373960	rs2071461	C	T	12886.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:1,488:1.00:489
chr11	11374016	rs2896586	T	A	10019.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr11	11374269	rs2071460	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.482;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:315,63:0.17:378
chr11	11374283	rs2896585	T	G	11033.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr11	11398698	rs10444245	G	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	11905993	rs10765894	C	T	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	11906125	rs201876070	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-2.043;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:182,31:0.15:213
chr11	11913585	rs11022079	G	T	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	11954786	rs10741562	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	11958113	.	G	GT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.494;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr11	11976628	rs7933089	G	A	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:28,128:0.82:156
chr11	11977505	rs3215040	A	AG	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:34,9:0.21:43
chr11	11986061	rs3206824	T	C	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	11989899	rs2291599	T	C	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	12115630	rs7104830	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	12183846	rs28625145	C	T	4419.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:56,189:0.77:245
chr11	12225946	rs3763823	T	G	5838.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:52,253:0.83:305
chr11	12229489	rs72866069	G	A	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:22,92:0.81:114
chr11	12241626	rs7101833	A	G	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr11	12242030	rs4237704	A	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr11	12244468	rs10831769	G	A	397.98	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	12248515	rs2706643	T	G	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:17,92:0.84:109
chr11	12248766	rs2706644	A	C	1181.79	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:7,52:0.88:59
chr11	12262410	rs2279613	G	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:9,49:0.84:58
chr11	12262476	rs2641936	C	A	4960.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	12264140	rs880963	A	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.727;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.132;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr11	12279937	rs2270513	T	C	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:20,132:0.87:152
chr11	12313887	rs1874043	C	G	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	12315186	rs10741578	G	A	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.709;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:403,79:0.16:482
chr11	12315407	rs10741579	G	C	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	12315716	rs1493951	C	T	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	12315848	rs1493952	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.009;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:219,57:0.21:276
chr11	12315891	rs1493953	G	A	8405.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	12315915	rs1493954	A	G	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=11.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-1.881;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:261,45:0.15:306
chr11	12316344	.	G	GCTC	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=1.339;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr11	12316389	rs3812754	A	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr11	12345459	rs903213	C	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	12379792	rs10741583	G	C	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	12495575	rs2288290	C	G	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:11,68:0.86:79
chr11	12495607	rs2288291	T	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	12495623	rs7109678	G	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	12517892	rs138094049	A	AGAGTGCATGCATGCAT	431.73	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	12518237	rs12223547	G	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	12532912	rs12283539	A	C	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr11	12534707	rs2243707	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.309;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:334,68:0.17:402
chr11	12534808	rs2403631	A	G	10982.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr11	12535209	rs2288293	C	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.129;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-1.342;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:158,25:0.14:183
chr11	12535415	rs11022380	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	12535485	rs56043920	CACAGGCTCCTGCACTA	C	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.412;QD=3.30;ReadPosRankSum=2.497;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:126,22:0.15:148
chr11	12886540	rs10500764	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=1.115;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:75,14:0.16:89
chr11	12923434	rs2289436	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=9.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.108;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr11	12951623	rs2245140	A	C	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:14,77:0.85:91
chr11	12951926	rs2727360	A	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	12952015	rs2727361	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr11	13032679	rs10603579	AGG	A	680.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	13032686	rs11399899	T	TC	680.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	13398129	rs10741617	T	A	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	13407184	rs2290034	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=1.161;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr11	13441126	rs7114113	A	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-1.309;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:141,25:0.15:166
chr11	13443250	rs3789325	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.200;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:145,30:0.17:175
chr11	13443459	rs11022814	A	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.566;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:74,15:0.17:89
chr11	13744989	rs145600175	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.407;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.753;QD=3.10;ReadPosRankSum=-0.464;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr11	13984720	rs10741631	A	C	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	13984749	rs11023039	C	T	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	14101493	rs5789820	G	GC	8459.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	14246099	rs11023151	A	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr11	14246296	rs1025412	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.313;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:83,16:0.16:99
chr11	14246336	rs2163463	G	A	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:11,61:0.85:72
chr11	14264916	rs2303973	A	G	6313.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	14303282	rs2303972	T	A	10907.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr11	14329984	rs2915408	C	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	14385941	rs75033079	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-0.700;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:120,17:0.12:137
chr11	14486608	.	TAC	T	57.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.41;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	14504774	.	CCACA	C	80	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=1;HapScore=3;MGOF=12;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=80;QD=20.75;SC=CGCGCGCACACCACACACACA;SbPval=0.32;Source=Platypus;TC=11;TCF=1;TCR=10;TR=4;WE=14504785;WS=14504764;set=Platypus	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	14540671	rs1823466	A	G	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	14991539	rs5239	T	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	14999877	rs7929159	G	A	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,53:0.77:69
chr11	15098718	rs2282653	G	A	381.88	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr11	15133939	rs11023439	G	T	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.929;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:21,35:0.62:56
chr11	15134137	.	AGT	A	96	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=0.9998;HP=2;HapScore=2;MGOF=18;MMLQ=25;MQ=58.7;NF=1;NR=1;PP=96;QD=49.5;SC=GGTGGATGTGAGTGTGTGTGT;SbPval=0.21;Source=Platypus;TC=9;TCF=1;TCR=8;TR=2;WE=15134146;WS=15134127;set=Platypus	GT:AD:AF:DP	1/1:7,2:0.22:9
chr11	15170644	rs1714354	T	C	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:41,139:0.77:180
chr11	15170879	rs1714353	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	15197186	rs1792588	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.989;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr11	15199957	rs1714376	T	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=0.555;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:97,24:0.20:121
chr11	15247307	rs61748861	CC	AA	6588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=5.997;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.14;ReadPosRankSum=-0.488;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:32,161:0.83:193
chr11	15247310	rs61748860	T	G	6545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.09;ReadPosRankSum=0.721;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:34,158:0.82:192
chr11	16117460	rs3059081	TA	T	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.752;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:70,41:0.37:111
chr11	16133413	rs4617548	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.828;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr11	16205323	rs7926424	T	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr11	16205595	rs1455111	C	T	793.98	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr11	16339918	rs34820506	C	CT	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-1.959;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:131,44:0.25:175
chr11	16760244	rs1846936	T	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	16766106	rs2270886	T	C	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:15,61:0.80:76
chr11	16775655	rs34665109	TC	T	577	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr11	16874067	rs418113	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.693;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.830;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:75,14:0.16:89
chr11	17035493	rs71047521	C	CA	2066.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	17035718	rs61881311	A	G	7065.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	17036012	rs113662255	A	G	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	17096059	rs11024148	A	G	10106.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr11	17096150	rs7125607	T	A	9492.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr11	17111272	rs10832733	A	G	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	17113483	rs7113396	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	17172133	rs2302511	T	C	8781.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	17333663	rs2521998	G	A	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	17339127	rs2634462	T	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	17351683	rs757081	C	G	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	17429922	rs2106865	T	C	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,44:0.83:53
chr11	17435936	rs4148631	G	A	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	17435966	rs4148630	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	17436191	rs1800852	A	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.795;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr11	17436193	rs1800851	G	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-1.058;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:62,13:0.17:75
chr11	17436936	rs4148626	A	G	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	17448704	rs1799854	G	A	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	17464534	rs2073587	T	C	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	17481948	rs886291	T	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	17484971	rs2301703	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	17491571	rs10400389	C	T	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	17496516	rs1048099	A	G	8969.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	17517235	rs10832795	A	G	1526.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.410;QD=20.35;ReadPosRankSum=-0.556;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:9,66:0.88:75
chr11	17517381	rs10530940	CAT	C	609.70	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr11	17517407	rs1859824	G	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	17518180	rs2072229	T	C	1678.82	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:6,66:0.92:72
chr11	17519742	rs1064074	C	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-0.384;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:470,70:0.13:540
chr11	17522638	rs10832796	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-0.590;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:245,36:0.13:281
chr11	17522810	rs2072234	T	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.349;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr11	17531449	rs2237965	G	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:4,31:0.89:35
chr11	17531831	rs733874	A	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	17533397	rs2190453	G	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:11,49:0.82:60
chr11	17533635	rs2190454	G	A	4906.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:47,209:0.82:256
chr11	17539212	rs10766408	T	C	440.84	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr11	17542439	rs2240487	T	C	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:27,99:0.79:126
chr11	17542583	rs2108332	C	T	7431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.23;ReadPosRankSum=-0.307;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:57,181:0.76:238
chr11	17542586	rs2041031	T	C	7409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.26;ReadPosRankSum=0.482;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:56,181:0.76:237
chr11	17542649	rs2041032	T	C	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,89:0.74:120
chr11	17542872	rs2240488	G	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:22,78:0.78:100
chr11	17545091	rs4757539	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:8,82:0.91:90
chr11	17548015	rs6486378	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=3.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.17;ReadPosRankSum=-0.330;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:293,42:0.13:335
chr11	17548737	.	T	C	1281	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=1;MGOF=6;MMLQ=20;MQ=59.0;NF=10;NR=29;PP=1281;QD=33.7377233986;SC=CTCCCACCGTTATGGAGTACT;SbPval=0.51;Source=Platypus;TC=40;TCF=10;TCR=30;TR=39;WE=17548745;WS=17548727;set=Platypus	GT:AD:AF:DP	1/1:1,39:0.97:40
chr11	17554914	rs2240489	G	C	544.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.301;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr11	17554915	.	C	CCG	535.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.666;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr11	17554930	rs878546	T	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.539;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:74,16:0.18:90
chr11	17555498	rs11024319	C	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.996;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr11	17574588	rs4757543	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.193;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:237,38:0.14:275
chr11	17582470	rs1990180	T	C	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	17591961	rs10832802	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,64:0.77:83
chr11	17593709	rs7106548	T	C	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:51,176:0.78:227
chr11	17594513	rs1076312	A	T	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:15,108:0.88:123
chr11	17596313	rs4757548	G	A	7557.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:56,333:0.86:389
chr11	17598187	rs4756901	G	A	12881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.54;ReadPosRankSum=-0.813;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:52,321:0.86:373
chr11	17598191	rs4756902	G	A	12744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.21;ReadPosRankSum=0.263;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:53,309:0.85:362
chr11	17600033	rs2355466	G	A	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:24,151:0.86:175
chr11	17667439	rs11024357	G	C	5156.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:51,228:0.82:279
chr11	17742433	rs191724611	C	A	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.215;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:179,49:0.21:228
chr11	17742600	rs144067837	TC	T	10482.73	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:66,337:0.84:403
chr11	17742681	rs10832853	G	C	5728.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	17868197	rs3831592	A	AT	1442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.097;QD=4.59;ReadPosRankSum=-0.308;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:253,61:0.19:314
chr11	17940172	.	GAC	G	571.73	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr11	17940200	rs74865487	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.387;QD=0.58;ReadPosRankSum=2.497;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:48,5:0.09:53
chr11	17940209	.	A	ACT	984.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-1.365;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chr11	17981047	rs211146	C	T	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	18023414	rs211134	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.112;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chr11	18034592	rs3741202	G	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=0.751;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,24:0.71:34
chr11	18034605	rs3741201	C	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr11	18044304	rs211101	C	T	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	18102232	rs10500831	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr11	18105302	rs3741199	T	C	6461.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	18108492	rs12363226	T	C	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=3.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.258;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:272,48:0.15:320
chr11	18108512	rs35525096	T	C	6096.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:50,267:0.84:317
chr11	18111692	rs11424886	A	AT	3199.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	18111872	.	CA	C	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-1.415;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:115,41:0.26:156
chr11	18118538	rs4757613	A	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	18127558	rs148650821	C	CCGG	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.693;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:100,19:0.16:119
chr11	18127679	rs871699	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	18158993	rs12291017	T	C	7039.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:61,304:0.83:365
chr11	18159169	rs2468839	A	G	7242.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	18159254	rs4274188	A	G	9339.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:72,394:0.85:466
chr11	18159455	rs72863191	T	C	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:38,179:0.82:217
chr11	18195051	rs2445179	T	C	10028.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr11	18210434	rs72866733	A	G	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=1.641;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:14,56:0.80:70
chr11	18210480	rs2445150	T	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	18210580	rs2124372	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.019;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:90,18:0.17:108
chr11	18210814	rs7936382	GC	AA	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.075;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:96,17:0.15:113
chr11	18210849	rs6486412	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.056;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:96,13:0.12:109
chr11	18231289	rs4757627	C	A	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	18231749	rs2468789	T	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	18253176	rs2460827	C	T	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	18267027	rs2468844	C	T	8804.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	18267112	rs2445173	A	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.575;QD=0.74;ReadPosRankSum=-1.979;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:219,37:0.14:256
chr11	18267135	rs56373142	C	T	4104.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:22,172:0.89:194
chr11	18267188	rs58546509	GA	G	2385.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:13,90:0.87:103
chr11	18267356	rs2445171	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=7.261;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-3.867;QD=0.83;ReadPosRankSum=-2.861;SOR=2.257;set=HC	GT:AD:AF:DP	0/1:51,8:0.14:59
chr11	18267373	rs1671927	C	T	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:14,70:0.83:84
chr11	18267431	rs76546965	C	T	4107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.65;MQRankSum=-10.131;QD=19.02;ReadPosRankSum=2.032;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:112,104:0.48:216
chr11	18267434	rs78891342	AA	GG	4163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.492;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.57;MQRankSum=-9.864;QD=18.76;ReadPosRankSum=2.129;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:114,108:0.49:222
chr11	18267463	rs74872559	A	G	5011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.785;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-6.400;QD=17.77;ReadPosRankSum=0.862;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:151,131:0.46:282
chr11	18267471	rs1136766	A	G	3269.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:131,155:0.54:286
chr11	18267478	rs79620496	G	A	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:155,131:0.46:286
chr11	18267651	rs80208174	A	C	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	18267702	rs4757631	T	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	18290636	rs145067473	A	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr11	18290737	rs145097411	T	G	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.52;MQRankSum=0.378;QD=18.59;ReadPosRankSum=0.291;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:15,49:0.77:64
chr11	18290859	rs1136743	C	T	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.695;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=18.131;MLEAC=1;MLEAF=0.500;MQ=41.75;MQRankSum=3.301;QD=34.89;ReadPosRankSum=-0.612;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:5,43:0.90:48
chr11	18290866	rs1136745	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.485;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=16.665;MLEAC=1;MLEAF=0.500;MQ=41.87;MQRankSum=-3.132;QD=1.17;ReadPosRankSum=-0.060;SOR=3.599;set=HC	GT:AD:AF:DP	0/1:40,5:0.11:45
chr11	18290874	rs1136747	T	C	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=17.784;MLEAC=1;MLEAF=0.500;MQ=43.22;MQRankSum=3.060;QD=35.97;ReadPosRankSum=0.038;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:5,40:0.89:45
chr11	18290880	rs28720026	C	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.52;QD=46.51;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	18290902	rs34068567	TT	CC	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=48.31;QD=44.93;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	18290906	rs35474820	G	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.76;QD=44.00;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	18291321	rs12218	T	C	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	18301605	rs11024601	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	18303404	rs2271997	C	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	18308081	rs80080323	C	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=0.701;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:69,10:0.13:79
chr11	18312953	rs4757638	G	A	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	18314359	rs76929453	G	A	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:24,114:0.83:138
chr11	18314579	rs10665418	C	CTT	2259.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	18317458	rs2305564	T	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	18317699	rs2305565	C	T	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	18327684	rs1140047	G	T	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	18330385	rs35952141	G	GA	2315.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	18333058	.	A	ATTATTT	258.74	.	AC=1;AF=0.500;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.72;QD=12.94;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr11	18354877	rs4150561	T	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	18357180	rs4150579	A	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	18357270	rs4150581	A	G	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	18359983	rs111946613	ATGTT	A	484.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	18379629	rs4150661	C	A	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	18382354	rs370660216	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=-0.138;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr11	18422113	rs5790035	C	CA	385.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	18422487	rs61736803	C	A	1457.28	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:8,62:0.89:70
chr11	18424451	rs5030621	C	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	18424487	rs4820	A	G	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	18424590	rs3758680	T	A	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	18426354	rs10684351	C	CAAAAAAAAAA	873.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=48.54;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	18426796	rs6486425	T	G	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	18428552	rs56345574	C	CA	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=1.145;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr11	18428637	rs113340412	A	ATTT,ATTTT	4485.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.32;ReadPosRankSum=-0.122;SOR=0.865;set=HC	GT:AD:AF:DP	1/2:12,101,40:0.66,0.26:153
chr11	18434532	rs77405133	C	A	1106.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.002;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.371;QD=36.89;ReadPosRankSum=0.314;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr11	18434536	rs10766477	T	C	1009.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.392;QD=37.40;ReadPosRankSum=0.741;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr11	18456511	rs73438666	G	A	1996.10	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:11,84:0.88:95
chr11	18456536	rs73438668	C	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:4,54:0.93:58
chr11	18467821	rs2658565	T	C	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	18478112	rs3839960	C	CAG	1003.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr11	18487305	rs17851143	C	G	5888.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:72,254:0.78:326
chr11	18487404	rs72870279	A	G	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:28,91:0.76:119
chr11	18487425	rs2658563	A	G	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	18548574	rs1857908	T	C	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	18591715	.	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-1.051;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr11	18591992	rs16935557	G	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr11	18632984	rs10128711	T	C	8135.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	18633971	rs11605097	G	A	5679.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.297;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	18720304	rs7946446	C	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	18720635	rs117159257	C	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	18722791	rs733460	A	G	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	18731004	rs72880717	C	G	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	18732386	rs56412752	A	C	4672.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	18732426	rs4237728	T	G	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	18738329	rs61886891	C	T	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	18738575	rs61886892	A	C	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	18743180	rs10832975	C	G	9969.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	18743396	rs66751057	T	TG	2017.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	18751041	rs1550870	C	T	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=-0.447;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:13,57:0.81:70
chr11	18763698	rs4757706	A	G	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	18764113	rs2278732	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.333;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr11	18793360	rs4075664	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr11	18793399	rs4075663	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr11	18793465	rs142701506	A	C	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:24,81:0.77:105
chr11	18793685	rs77383503	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,27:0.84:32
chr11	18885067	rs36002518	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=0.180;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:195,49:0.20:244
chr11	18955744	rs11599929	C	T	7475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=2.269;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:311,337:0.52:648
chr11	18956196	rs78179510	C	T	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:258,200:0.44:458
chr11	18978501	rs12363322	C	A	6419.96	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:31,269:0.90:300
chr11	18994005	rs7114481	T	C	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	19167850	rs2271001	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-1.038;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:201,31:0.13:232
chr11	19169319	.	TC	T	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=4.607;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.992;QD=5.98;ReadPosRankSum=0.654;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr11	19174102	.	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.406;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:91,17:0.16:108
chr11	19186826	rs2042687	A	T	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr11	19191922	.	CTTT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=2.021;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr11	19194141	rs7111850	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	19197349	.	C	CT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.059;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:119,29:0.20:148
chr11	19206426	rs2288251	A	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=5.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.093;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:155,25:0.14:180
chr11	19247429	rs117623539	A	G	1781.90	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:7,72:0.91:79
chr11	19256250	rs793269	C	T	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	19261797	rs11025068	A	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr11	19372616	rs10655705	G	GGA	4310.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	19798951	.	CT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.180;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr11	19854095	rs148087344	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.708;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:142,22:0.13:164
chr11	19901632	rs11025310	G	A	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.577;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:237,61:0.20:298
chr11	19955500	rs1372989	A	G	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr11	19961457	rs11423145	C	CT	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:4,38:0.90:42
chr11	19970501	rs11025335	T	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=2.620;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:291,46:0.14:337
chr11	19970558	rs2585773	T	C	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	19970579	rs2707084	C	T	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	20057371	rs6483634	T	G	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	20065779	rs3802800	C	G	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	20066355	rs10219212	G	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	20072779	rs6483635	C	T	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	20099112	rs4757028	A	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.722;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:188,28:0.13:216
chr11	20099399	rs6483641	G	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.676;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr11	20099449	rs12146551	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.221;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr11	20099541	rs6483642	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.21;ReadPosRankSum=0.484;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:153,19:0.11:172
chr11	20099767	rs7121301	A	C	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.969;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=2.027;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr11	20101704	rs1867114	C	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.268;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:152,27:0.15:179
chr11	20101744	rs1867115	C	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.275;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:145,25:0.15:170
chr11	20101924	rs1867116	T	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=1.352;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	20104669	rs2028570	G	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=6.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.539;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:110,18:0.14:128
chr11	20112492	rs1837971	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.766;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr11	20117232	rs2289566	T	C	8993.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	20119298	rs2289564	G	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.232;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:115,17:0.13:132
chr11	20119312	rs2289563	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.193;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:105,15:0.12:120
chr11	20122392	rs2245314	C	A	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	20124914	rs2243411	A	C	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	20127046	rs11025385	C	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.184;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:67,11:0.14:78
chr11	20139632	rs2245836	G	C	4042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.09;ReadPosRankSum=0.180;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:22,161:0.88:183
chr11	20178551	rs10717537	CG	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.645;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr11	20178717	rs831464	G	T	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:14,99:0.88:113
chr11	20181382	.	G	A	375.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr11	20385228	rs3808991	T	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	20385606	rs10437608	G	A	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	20398034	rs10741834	T	C	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	20403825	rs7926967	A	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	20403904	rs10766664	G	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	20404506	rs2403587	T	C	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-1.386;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:8,36:0.82:44
chr11	20404613	rs3824886	T	G	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	20404757	rs3781679	T	C	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	20411199	rs56308542	TAAAAA	TA,T	2533.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=70;set=Intersection	GT:AF:DP	1/1:1.00:64
chr11	20411418	rs7937501	G	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	20411424	rs7937204	A	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=1.775;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	20419028	rs7934372	T	C	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	20424326	rs10833319	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	20429454	rs10741836	T	C	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	20448531	rs12797994	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.64;ReadPosRankSum=-0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr11	20473655	rs1001669	T	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	20483748	rs3758803	T	C	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	20515555	rs6483697	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	20515916	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.525;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr11	20529886	rs6483700	G	A	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	20621043	rs58405430	T	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr11	20622605	rs72944437	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.624;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chr11	20622975	rs1443547	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-1.635;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:161,23:0.12:184
chr11	20623042	rs1443548	T	C	7673.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	20623156	rs1443549	C	G	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	20628650	rs34505618	A	G	2779.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:23,121:0.84:144
chr11	20639400	rs7925597	A	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr11	20639457	rs11025653	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:13,59:0.82:72
chr11	20648418	rs4923548	C	T	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	20658679	rs2000959	C	A	4530.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:30,191:0.86:221
chr11	20673867	rs2276433	G	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	20699394	rs1793003	C	G	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	20805286	rs8176785	G	A	7083.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	20939655	rs3740874	T	C	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:28,125:0.82:153
chr11	20949115	rs2293241	C	T	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	20949763	rs4363596	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	20959185	rs1880088	A	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	20959429	rs1880087	T	C	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	20959482	rs1880086	G	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	20959533	rs1880085	G	A	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	21305927	rs4151053	T	C	5335.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	21581665	rs7119475	C	T	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	21581805	rs8176789	C	T	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	21581997	rs8176790	C	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	21592228	rs4922847	C	A	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	22214877	rs139514865	A	AAGGAGGAGGGGAATGAGGAGGAGG	4472.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	22214903	rs12792259	G	C	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	22233029	rs4922980	G	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	22239661	.	T	TCTCACACACACACACACA	321.75	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	22242729	rs4312063	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	22271870	rs7481951	A	T	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:9,52:0.85:61
chr11	22296094	rs72105710	CTTTT	C	754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.163;QD=3.31;ReadPosRankSum=1.291;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:194,34:0.15:228
chr11	22297606	rs5790245	AT	A	814.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.989;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,51:0.86:59
chr11	22301410	rs5790246	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.537;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	22363396	rs1562447	T	A	5627.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	22364744	rs2246710	G	A	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	22391534	rs2665677	G	A	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	22397739	rs2248436	A	C	342.28	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr11	22398830	rs1374718	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	22647366	rs3740615	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,49:0.82:60
chr11	22696451	rs922571	A	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	22747745	rs337448	A	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	22759168	rs7934119	A	G	992.81	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:6,37:0.86:43
chr11	22770922	rs2270755	G	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr11	22851172	rs2286811	C	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.124;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:103,21:0.17:124
chr11	22851409	rs2286810	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:9,53:0.85:62
chr11	22880918	rs3213707	T	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr11	24750842	rs7128434	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	24784862	rs2716532	A	T	740.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.01;ReadPosRankSum=2.535;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:4,33:0.89:37
chr11	24998335	rs11028314	A	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr11	25098911	rs116821457	C	T	6868.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:63,299:0.83:362
chr11	25098938	rs7930185	G	C	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.578;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:278,64:0.19:342
chr11	25099056	rs11028403	A	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr11	25100229	rs10500994	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.282;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:82,22:0.21:104
chr11	26353991	rs56225203	T	TA	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=9.271;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.809;QD=8.38;ReadPosRankSum=0.352;SOR=3.706;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr11	26465500	rs4032918	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	26481611	rs2047099	G	A	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	26547348	rs430563	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.43;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	26547353	rs410617	T	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	26552679	rs9988806	T	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	26552696	rs2131696	T	A	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	26552702	rs293937	T	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.31;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	26558841	rs386635	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	26559172	rs396863	G	A	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	26563464	rs410036	A	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	26563652	rs420143	T	G	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	26568966	rs2663168	A	G	6623.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	26574740	rs395770	T	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	26574782	rs59938249	TG	T	1992.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:30,115:0.79:145
chr11	26574783	rs56325113	G	T	143.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.251;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:118,27:0.19:145
chr11	26581382	rs375616498	TAC	T	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.180;QD=22.19;ReadPosRankSum=0.792;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr11	26584625	rs444178	C	A	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	26586801	rs15783	G	A	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	26587133	rs293980	T	C	7840.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	26588804	rs293976	C	T	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	26621117	rs11604868	A	C	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	26645894	rs1012552	A	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	26655627	rs56177338	C	CAAAA,CAAAAA	1314.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.62;QD=32.87;SOR=3.098;set=HC	GT:AD:AF:DP	1/2:3,19,18:0.47,0.45:40
chr11	26663298	rs11603910	T	A	837.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	26669167	rs10501059	A	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	26692594	rs138625216	T	TTGTGTGTGTGTG,TTGTGTGTGTGTGTG	1571.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=40;set=Intersection	GT:AF:DP	1/2:0.41,0.59:32
chr11	26692631	rs7128384	A	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	26692733	rs7114378	T	C	9367.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	26692742	rs7128823	G	A	9570.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	26692933	rs7101361	A	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	26694812	rs4278475	C	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	26700099	rs12793773	G	A	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	26702482	rs10767569	T	A	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	26702664	rs10734383	C	T	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	26732923	rs4322349	A	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-1.093;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:142,29:0.17:171
chr11	26734209	rs10742156	C	T	10368.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr11	27077118	rs10767598	C	T	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	27078611	rs28635996	T	A	96.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	27078643	rs140671117	C	CATA	2019.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	27379127	rs3741407	C	G	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:9,56:0.86:65
chr11	27390089	rs2447997	T	C	6191.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	27401743	rs2472623	A	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:19,71:0.79:90
chr11	27401940	rs2472622	T	A	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:5,55:0.92:60
chr11	27412535	rs12273521	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	27412782	rs35556457	CTTT	C	1311.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.79;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	27413855	rs1871251	T	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	27414071	rs3085383	GA	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.960;QD=0.72;ReadPosRankSum=0.692;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr11	27493630	rs200956245	TC	T	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	27523164	rs151336878	T	TGAAGTTAAAATTTCAGGC	3509.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	27523186	rs10835188	G	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	27679662	rs2353512	T	C	9592.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	27695910	rs10835210	C	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	27910923	rs6484341	T	A	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	28045260	rs33937991	A	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	28057957	rs10458896	T	C	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	28078254	rs7944852	A	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	28104605	rs7937778	C	T	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	28134974	rs60970073	C	A	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	30034106	.	T	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-1.102;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:129,28:0.18:157
chr11	30352473	rs35824273	C	CAG	1563.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr11	30438948	rs492604	C	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.71;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	30438958	rs11354702	CT	C	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.803;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:7,26:0.79:33
chr11	30900263	rs5790842	TA	T	217.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.220;QD=9.44;ReadPosRankSum=-1.977;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr11	30902893	rs273613	T	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	30922081	rs273560	C	T	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	30930393	rs175398	T	G	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	30953608	rs163877	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	30965855	rs273605	A	T	6449.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	30974203	rs10767883	T	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	31236930	rs141863842	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	31326420	rs2616821	T	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	31327316	rs2616815	C	T	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	31327766	rs2761592	G	A	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	31458730	rs7479413	T	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	31648529	rs2273943	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	31653956	rs4922872	C	A	7066.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,267:0.99:269
chr11	31811460	.	CTT	C,CT	990.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=1.706;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.449;QD=12.23;ReadPosRankSum=1.612;SOR=0.450;set=HC	GT:AD:AF:DP	1/2:10,38,33:0.47,0.41:81
chr11	31811645	.	C	CAAAA	58.14	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	31812582	rs2071754	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	31814879	rs3026384	G	A	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	31838252	rs5790869	C	CG	729.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	32118665	.	CT	C	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.220;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:113,48:0.30:161
chr11	32118925	rs223073	A	G	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	32452001	rs72267419	GGAGA	G,GGA	501.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=21.81;SOR=0.776;set=HC	GT:AD:AF:DP	1/2:0,12,11:0.52,0.48:23
chr11	32697291	rs7116464	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	32704946	rs1396995	C	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	32705076	rs72895286	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	32722320	rs11031943	A	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	32781829	rs11442361	G	GA	247.80	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr11	32949463	rs146740108	A	AT	451.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-0.304;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr11	32954344	rs1022586	G	A	9411.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	32956244	rs7940077	A	G	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	32956620	rs7481878	A	G	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr11	32975333	rs7395190	T	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	32990842	rs6416072	G	T	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	33014668	rs7941237	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	33049341	rs34161108	G	A	4937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=1.302;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:42,219:0.84:261
chr11	33106908	rs3834432	C	CTTTATAG	3335.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	33113653	rs7950763	T	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	33113910	rs113144162	A	AT	3292.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.291;MLEAC=2;MLEAF=1.000;MQ=60.45;MQRankSum=0.353;QD=24.03;ReadPosRankSum=1.850;SOR=2.117;set=HC	GT:AD:AF:DP	1/1:2,135:0.99:137
chr11	33118529	rs11363325	GC	G	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=3.532;QD=1.42;ReadPosRankSum=-1.288;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:48,8:0.14:56
chr11	33183017	rs3736213	A	G	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	33307937	.	CTT	C,CT	1521.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=2.945;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.549;QD=14.77;ReadPosRankSum=1.417;SOR=0.633;set=HC	GT:AD:AF:DP	1/2:10,50,43:0.49,0.42:103
chr11	33360783	rs3847592	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	33360886	rs5790925	AT	A	3891.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	33362723	rs266470	G	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	33363057	rs80111299	C	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.770;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:166,30:0.15:196
chr11	33370884	rs4756641	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.575;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr11	33719821	rs831611	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	33721175	rs4755893	G	C	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:26,86:0.77:112
chr11	33763682	rs3794200	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.030;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:80,29:0.27:109
chr11	33767966	rs77852257	G	A	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:16,94:0.85:110
chr11	33768086	rs7120610	T	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-1.024;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:173,38:0.18:211
chr11	33773161	rs7479064	G	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	33775982	rs2272065	A	G	678.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.86;ReadPosRankSum=1.405;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:5,31:0.86:36
chr11	33780163	rs1522086	A	T	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.070;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:182,42:0.19:224
chr11	33790268	rs1915894	G	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.296;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.885;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr11	33880896	rs3740616	T	A	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:10,70:0.88:80
chr11	33886294	rs2038602	A	G	5694.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:53,245:0.82:298
chr11	33886547	rs3824848	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.179;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:139,29:0.17:168
chr11	33891357	rs11032432	G	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr11	33902593	rs3740618	C	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr11	33902612	rs3740619	C	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr11	34093349	rs10718447	AT	A	1251.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	34098283	.	G	GT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=0.449;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr11	34101452	.	GTTTTTTTTTTTTTTTT	G	328.74	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.09;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	34107785	rs4755360	G	A	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	34113717	rs2982592	C	T	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	34135183	rs34445882	CA	C	212.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.310;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.546;QD=7.31;ReadPosRankSum=-1.336;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr11	34149199	rs2957512	T	C	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	34152939	rs2957516	T	C	5324.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	34154641	rs2957518	C	T	10817.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr11	34158411	rs2982615	A	G	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	34158431	rs2957521	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	34163705	rs2982612	T	C	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	34176214	rs2957525	A	G	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	34188982	rs7120749	A	G	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	34189564	rs4756111	A	G	7058.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	34226041	rs2955944	A	G	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	34460472	rs7943316	A	T	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	34460541	rs1049982	T	C	10036.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	34460711	rs12270780	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.116;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:88,17:0.16:105
chr11	34460741	.	A	C	1630.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:11,56:0.84:67
chr11	34478073	rs2073058	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.157;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.450;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr11	34502345	rs2231828	T	C	7204.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:52,312:0.86:364
chr11	34511541	rs2231825	C	A	4857.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=0.650;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:19,204:0.91:223
chr11	34514941	rs737254	T	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr11	34532993	rs11606405	T	C	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:26,118:0.82:144
chr11	34678435	rs435537	C	G	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	34680053	rs3818514	G	A	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	34680598	rs11032804	C	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	34904399	rs2288667	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.179;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:103,26:0.20:129
chr11	34904509	rs2288668	T	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.846;SOR=0.161;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr11	34909827	rs35393135	GA	G	339.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:54,13:0.19:67
chr11	34909833	rs61752923	A	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=3.035;QD=4.83;ReadPosRankSum=-0.022;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr11	34909926	rs1571133	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.610;QD=0.22;ReadPosRankSum=-0.883;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:148,23:0.13:171
chr11	34910397	rs1977420	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.399;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr11	34910433	rs1977421	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.315;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr11	34918273	rs34774694	G	GCAA	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.419;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:109,19:0.15:128
chr11	34918375	rs2986429	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.846;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:211,34:0.14:245
chr11	34937901	rs2956112	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.27;ReadPosRankSum=1.217;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:172,24:0.12:196
chr11	34937931	rs2956111	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.793;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:105,16:0.13:121
chr11	34938115	rs2956110	C	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.945;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr11	34938265	rs2956109	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:72,25:0.26:97
chr11	34953088	rs34345153	G	GT	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=0.290;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr11	34969271	rs3215780	A	AT	923.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr11	34978892	rs2243948	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.450;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr11	34982146	rs2732554	T	G	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=1.962;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr11	34982146	.	TTC	GTA	500	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=1;MGOF=6;MMLQ=28;MQ=60.0;NF=3;NR=11;PP=500;QD=39.533419633;SC=AAAGAGCTTATTCAGTCTTAA;SbPval=0.47;Source=Platypus;TC=50;TCF=9;TCR=41;TR=14;WE=34982156;WS=34982136;set=Platypus	GT:AD:AF:DP	1/0:36,14:0.28:50
chr11	34982148	rs2767036	C	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=2.306;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr11	34991727	rs497582	T	C	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=4.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-1.058;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:235,55:0.19:290
chr11	34999484	rs733567	G	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.549;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr11	34999745	rs10768108	C	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.510;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr11	35198032	rs4756195	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.989;SOR=0.186;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr11	35198108	rs4756196	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-1.429;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr11	35201810	rs11033019	T	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.757;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:145,34:0.19:179
chr11	35218445	rs61882760	A	G	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:19,130:0.87:149
chr11	35222681	rs35356320	C	T	8676.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:57,366:0.87:423
chr11	35223158	rs11033025	T	C	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:18,122:0.87:140
chr11	35226155	rs9666607	A	G	5579.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:60,240:0.80:300
chr11	35229673	rs1467558	T	C	10620.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	35244044	rs7116739	G	C	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:15,73:0.83:88
chr11	35302668	rs2236273	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:4,39:0.91:43
chr11	35308369	rs1042113	T	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr11	35322907	rs11033063	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr11	35322940	rs11033064	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr11	35323200	rs2273689	A	G	3803.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:38,166:0.81:204
chr11	35327748	rs752949	C	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:10,91:0.90:101
chr11	35327825	rs3895234	A	G	1705.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.149;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.396;QD=21.32;ReadPosRankSum=-0.587;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:9,71:0.89:80
chr11	35334032	rs56028027	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr11	35338893	rs2273687	G	C	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:18,115:0.86:133
chr11	35344345	rs7115450	A	G	830.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.26;ReadPosRankSum=0.858;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:4,37:0.90:41
chr11	35453796	rs11344760	GC	G	1386.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	35456061	rs61736408	T	C	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:31,82:0.73:113
chr11	35456153	rs35216474	C	T	4806.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:58,202:0.78:260
chr11	35456453	rs675227	G	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr11	35641312	rs3740799	G	A	4864.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:35,197:0.85:232
chr11	35706780	rs3740798	G	C	5348.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:46,231:0.83:277
chr11	35827958	rs61881297	A	G	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:26,137:0.84:163
chr11	36031593	rs262404	G	A	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	36103381	rs3740962	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr11	36251046	rs4755444	G	A	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr11	36293048	rs7107433	G	A	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:18,67:0.79:85
chr11	36298555	rs2289986	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr11	36311014	rs7939948	G	T	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:13,60:0.82:73
chr11	36422792	rs330261	G	A	7288.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	36453506	rs746761	T	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:21,76:0.78:97
chr11	36459130	rs4756316	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.628;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.982;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:41,6:0.13:47
chr11	36484208	rs514352	T	C	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	36514290	rs2303439	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	36518824	rs3830511	T	TA	2819.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	36595600	rs3740955	A	G	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:40,171:0.81:211
chr11	36597734	rs1980131	A	G	5740.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:42,238:0.85:280
chr11	36612090	rs1818545	C	T	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:13,65:0.83:78
chr11	36631867	rs77576907	G	A	293.22	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr11	36655049	rs144097691	C	CA	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.738;QD=12.89;ReadPosRankSum=0.312;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr11	36657775	rs871912	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr11	36669778	rs1566245	C	T	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:15,83:0.85:98
chr11	42209105	rs11416548	G	GA	1457.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:20,82:0.80:102
chr11	42262449	rs10837795	G	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	43356931	rs5743251	A	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:5,63:0.93:68
chr11	43361808	rs74503922	A	G	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr11	43413157	rs202071795	TTTGCG	T	136.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=-1.132;QD=2.28;ReadPosRankSum=0.888;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr11	43413158	rs67884453	TTGCG	T	471.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.248;QD=8.00;ReadPosRankSum=-0.054;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr11	43419103	.	T	TC	921.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.44;ReadPosRankSum=-0.200;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,42:0.84:50
chr11	43425527	rs143061764	AC	A	1087.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr11	43472895	rs6485426	G	C	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	43515304	rs12276980	C	G	2048.78	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:9,83:0.90:92
chr11	43702581	rs4573669	G	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	43702615	rs4573668	G	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	43772549	rs12801203	A	G	632.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.09;ReadPosRankSum=-0.382;SOR=0.515;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr11	43775734	rs4643069	A	G	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	43776481	rs7115919	C	T	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	43852491	rs6485471	T	C	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:22,103:0.82:125
chr11	43861748	rs10734518	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	43905440	rs2271818	C	G	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:10,52:0.84:62
chr11	43908230	rs7101434	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=1.107;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:228,32:0.12:260
chr11	43911365	rs2434478	T	C	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	43940566	rs7926534	T	C	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	43940644	rs1048928	G	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	43946967	rs1973717	A	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	43947990	rs12797684	T	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	43954812	rs2434476	T	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr11	43964842	rs7077	G	C	2485.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.821;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=-0.707;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:1,93:0.99:94
chr11	44080210	rs2074051	T	C	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:13,72:0.85:85
chr11	44089161	rs178514	G	A	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:15,87:0.85:102
chr11	44092880	rs2074039	C	T	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:24,245:0.91:269
chr11	44096115	rs79453091	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:15,83:0.85:98
chr11	44096238	rs178521	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:18,66:0.79:84
chr11	44096284	rs202091203	CTCTTTCTT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=8.10;ReadPosRankSum=0.633;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr11	44096322	.	CTT	C	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-0.000;QD=20.25;ReadPosRankSum=-2.628;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	44096330	rs61491891	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-0.000;QD=19.55;ReadPosRankSum=-2.050;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	44096334	.	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-0.000;QD=18.92;ReadPosRankSum=-2.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr11	44098751	rs2074041	G	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr11	44098969	rs2074042	G	A	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:36,119:0.77:155
chr11	44098985	rs2074043	G	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:33,88:0.73:121
chr11	44101118	rs7950395	C	T	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:25,76:0.75:101
chr11	44104701	rs79395013	C	CCT	3208.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,85:0.73:116
chr11	44104981	rs3107275	C	T	4803.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:51,194:0.79:245
chr11	44117898	rs11037860	T	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr11	44125349	rs7126566	G	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr11	44130665	rs77233576	A	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr11	44146257	rs10769018	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=1.380;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:86,16:0.16:102
chr11	44151457	rs7125352	T	C	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	44286566	rs3802805	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-1.018;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:192,29:0.13:221
chr11	44289289	rs10742699	A	G	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr11	44289312	rs10769024	C	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.998;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr11	44297054	rs10769028	T	C	14559.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr11	44297253	rs11037929	A	G	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	44297343	rs11037930	C	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	44331309	rs12421995	G	A	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	44331509	rs3824915	C	G	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	44585933	rs934178	T	C	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	44608866	rs7930303	T	C	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	44609198	rs7102843	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr11	44626593	rs79947274	T	A	9981.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:84,440:0.84:524
chr11	44639921	rs2303863	C	T	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:16,73:0.82:89
chr11	44640100	rs12421108	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:10,53:0.84:63
chr11	44640268	rs1139971	A	G	4334.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:28,191:0.87:219
chr11	44640477	rs11038081	A	G	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-1.834;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:169,41:0.20:210
chr11	44919495	rs10838380	C	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	44924950	rs5791652	GC	G	2506.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	44928135	rs2306665	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	44940828	rs2291334	G	A	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr11	44950784	rs835990	G	A	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	44952285	rs10838390	C	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	44959213	rs2279363	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	44959924	rs2306666	G	A	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	44968756	rs4755920	G	A	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr11	45204071	rs1078930	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	45230443	rs12226640	T	C	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	45230862	rs3781705	C	A	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:3,236:0.99:239
chr11	45234877	rs11038356	T	C	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	45235433	rs3781704	G	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	45672261	rs3802762	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.206;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:137,26:0.16:163
chr11	45793034	rs79229167	C	G	1479.94	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:6,50:0.89:56
chr11	45793154	rs3740704	A	C	3853.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:38,166:0.81:204
chr11	45793218	rs2666891	G	C	4727.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:44,206:0.82:250
chr11	45827350	rs3808976	A	G	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:12,49:0.80:61
chr11	45832295	rs7127456	A	G	1316.78	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:7,58:0.89:65
chr11	45832935	rs1139266	G	A	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	45834044	rs4756027	C	T	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	45834198	rs7943306	T	C	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	45868850	rs11394694	C	CG	5498.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	45877529	rs2292913	A	G	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	45877688	rs2292912	C	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	45883914	rs4755343	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	45891418	rs7123390	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:10,45:0.82:55
chr11	45891508	rs4755345	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	45926445	rs2271847	T	C	17378.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:1,673:1.00:674
chr11	45932246	rs1533613	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:9,62:0.87:71
chr11	45935384	rs1132349	A	G	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	45936035	rs3802758	G	A	7689.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	45937267	rs10742772	C	T	20183.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,771:1.00:771
chr11	45937968	rs3215273	CTA	C	297.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr11	45944985	rs113938769	A	G	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:11,74:0.87:85
chr11	45944994	rs33927614	G	GC	3486.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	45945969	rs72902492	C	T	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:20,74:0.79:94
chr11	45947819	rs200132116	G	A	6699.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:31,278:0.90:309
chr11	45949201	rs884668	C	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.571;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:205,44:0.18:249
chr11	45949534	rs939105	C	T	10468.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	45950428	rs117263461	T	A	4885.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:49,207:0.81:256
chr11	45957292	.	TAA	T	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=-0.000;DP=68;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.566;QD=4.41;ReadPosRankSum=1.261;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr11	45959669	rs10742773	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	46105688	rs2932515	G	A	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	46342081	rs67946579	TG	T	4359.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	46342259	rs79068197	A	AG	17540.73	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr11	46369238	rs76656670	C	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.672;QD=13.83;ReadPosRankSum=-0.672;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr11	46369267	rs114974750	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-1.037;QD=10.67;ReadPosRankSum=1.452;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr11	46404340	.	GCCC	G,GC	2321.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.004;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=5.262;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.96;ReadPosRankSum=2.065;SOR=3.383;set=HC	GT:AD:AF:DP	1/2:3,47,25:0.63,0.33:75
chr11	46569434	rs58268270	CA	C	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-1.127;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:69,37:0.35:106
chr11	46665815	.	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.514;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:105,20:0.16:125
chr11	46686260	rs10838610	G	A	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	46694313	rs67065551	GTC	G	3886.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	46699494	.	G	GA	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.893;QD=1.60;ReadPosRankSum=-0.605;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr11	46701728	rs10838612	G	T	4705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=-1.124;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:32,207:0.87:239
chr11	46702160	rs4752927	C	T	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:12,162:0.93:174
chr11	46702920	rs4268467	T	C	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	46722731	rs4752928	T	C	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	46724716	rs148055528	CAGTGGTGACAGA	C	2616.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:13,66:0.84:79
chr11	46741495	rs2070850	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr11	46744925	rs2070852	G	C	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=3.705;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:356,75:0.17:431
chr11	46745003	rs5896	C	T	7428.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:66,322:0.83:388
chr11	46747979	rs1799867	T	C	1319.78	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:7,48:0.87:55
chr11	46760466	rs3136515	G	T	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	46776697	rs4237546	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	46802094	rs6485691	C	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	46812227	.	T	C	38	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=38;QD=18.1928031368;SC=GTGTCTCATATTGTTGTCGAG;SbPval=1.0;Source=Platypus;TC=18;TCF=4;TCR=14;TR=4;WE=46812235;WS=46812217;set=Platypus	GT:AD:AF:DP	1/0:14,4:0.22:18
chr11	46822686	rs10734549	C	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=10.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.729;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:108,19:0.15:127
chr11	46837625	rs59649961	AC	A	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=43.71;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	46837631	.	CCA	C	1154	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=6;HapScore=1;MGOF=7;MMLQ=28;MQ=60.34;NF=22;NR=3;PP=1154;QD=47.16;SC=AACGACCCCCCCATTCCCCCC;SbPval=0.58;Source=Platypus;TC=25;TCF=22;TCR=3;TR=25;WE=46837642;WS=46837621;set=Platypus	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	46837633	rs58152993	AT	A	1304.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=43.49;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	46837634	.	T	A	601	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=1;HapScore=1;MGOF=7;MMLQ=25;MQ=60.09;NF=27;NR=3;PP=601;QD=21.1923737516;SC=GACCCCCCCATTCCCCCCAAC;SbPval=0.72;Source=Platypus;TC=32;TCF=28;TCR=4;TR=30;WE=46837642;WS=46837621;set=Platypus	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	46840119	rs67178247	TG	T	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.328;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr11	46889713	rs2306026	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr11	46890197	rs2290883	G	A	5330.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:34,224:0.87:258
chr11	46893108	rs2306029	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-1.368;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:137,22:0.14:159
chr11	46897253	rs2306032	G	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.324;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:223,41:0.16:264
chr11	46897446	rs2306033	G	A	6848.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:44,288:0.87:332
chr11	46897995	rs964551	G	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-1.310;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:170,30:0.15:200
chr11	46898771	rs6485702	T	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.205;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:78,15:0.16:93
chr11	46900659	rs2306028	G	T	3709.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:23,154:0.87:177
chr11	46907827	rs2306027	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.977;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:108,15:0.12:123
chr11	46911704	rs2306036	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.117;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr11	46911781	rs2306037	G	C	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:13,56:0.81:69
chr11	46914583	rs10838631	T	C	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	46914598	rs10769215	A	G	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	46917983	rs898604	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.239;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:109,25:0.19:134
chr11	46969616	rs2867207	T	C	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	47159053	rs4752965	G	A	4652.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:32,182:0.85:214
chr11	47181040	rs1965952	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:4,41:0.91:45
chr11	47185510	rs4752969	A	G	397.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.94;ReadPosRankSum=0.296;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	47188314	rs4752820	T	C	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	47188592	rs3740690	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.937;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr11	47189416	rs60076400	T	TA	1511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.603;QD=9.95;ReadPosRankSum=-0.062;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:57,95:0.62:152
chr11	47193367	rs57323109	T	G	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:8,67:0.89:75
chr11	47196982	rs2279439	C	T	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:20,80:0.80:100
chr11	47200654	rs143360638	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.009;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:563,104:0.16:667
chr11	47201924	rs11039119	G	A	12298.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:141,525:0.79:666
chr11	47203904	rs10838664	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:19,83:0.81:102
chr11	47204175	rs2279438	A	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=6.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-1.856;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:134,38:0.22:172
chr11	47238522	rs326212	T	C	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	47238665	rs326211	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	47251199	rs830085	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.134;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr11	47256708	rs2306353	C	T	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:13,78:0.86:91
chr11	47259668	rs326222	T	C	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.797;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:326,59:0.15:385
chr11	47260272	rs2013867	T	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr11	47260319	rs901746	A	G	1498.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.042;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.71;ReadPosRankSum=-1.350;SOR=0.311;set=HC	GT:AD:AF:DP	1/1:4,62:0.94:66
chr11	47266471	rs75393320	G	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:4,50:0.93:54
chr11	47266808	rs2242261	T	G	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:16,65:0.80:81
chr11	47267408	.	C	CGTGTGTGTGTGTGTGT	980.73	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:3,31:0.91:34
chr11	47269159	rs4752973	T	C	3766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=-1.758;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:35,167:0.83:202
chr11	47269936	rs7118396	C	T	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:16,67:0.81:83
chr11	47270255	rs2167079	C	T	4889.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:40,209:0.84:249
chr11	47280762	rs11039155	G	A	4902.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:45,192:0.81:237
chr11	47282024	rs2279238	C	T	4845.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:29,204:0.88:233
chr11	47298201	rs2291119	C	T	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.118;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:117,31:0.21:148
chr11	47298360	rs326214	G	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.897;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:297,57:0.16:354
chr11	47300429	rs4752977	T	C	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,55:0.85:65
chr11	47303275	rs326217	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.403;QD=0.65;ReadPosRankSum=0.243;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:117,21:0.15:138
chr11	47305669	rs3816725	T	G	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:41,147:0.78:188
chr11	47306585	rs1051006	G	A	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:20,137:0.87:157
chr11	47307332	rs148495681	G	GTCATTA	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	47311367	rs10838686	G	T	367.31	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr11	47312374	rs58023804	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	47317625	rs5791755	CAAAAG	C	2537.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:15,63:0.81:78
chr11	47331116	rs1017594	T	C	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	47346145	rs2290148	G	A	9091.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:76,392:0.84:468
chr11	47346303	rs189836870	C	T	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:27,130:0.83:157
chr11	47350287	rs2305280	G	A	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:29,143:0.83:172
chr11	47350553	rs10838693	G	C	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:36,145:0.80:181
chr11	47353498	rs2290146	G	A	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:15,58:0.79:73
chr11	47354068	rs3729802	G	A	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:10,68:0.87:78
chr11	47354787	rs1052373	C	T	3393.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.85;ReadPosRankSum=0.707;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:19,152:0.89:171
chr11	47359503	rs11323436	CT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.176;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr11	47361084	rs2856653	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	47362431	rs2697926	A	G	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	47362465	rs10769254	G	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:15,60:0.80:75
chr11	47364762	rs896818	A	G	6661.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	47371484	rs11570050	AG	A	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=2.148;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:147,26:0.15:173
chr11	47380061	rs10734557	A	C	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:26,140:0.84:166
chr11	47380276	rs35282035	G	GCA	3916.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=2.635;QD=21.29;ReadPosRankSum=0.167;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:55,129:0.70:184
chr11	47380340	rs3740688	G	T	2948.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:33,121:0.79:154
chr11	47380688	rs35284836	GGAA	G	1313.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	47431728	rs2010519	A	G	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	47431966	rs755555	C	T	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.104;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:144,34:0.19:178
chr11	47432034	rs755554	G	C	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:17,57:0.77:74
chr11	47434986	rs2293576	G	A	6610.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:51,283:0.85:334
chr11	47436531	rs11039228	G	T	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	47441782	.	A	G	861.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr11	47446292	rs55927797	A	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.739;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr11	47447346	rs10838709	C	T	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:25,96:0.79:121
chr11	47460098	rs10769267	C	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	47460306	rs7126210	A	G	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	47462837	rs10716680	AG	A	3026.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	47463483	rs34729771	AG	A	1331.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	47469439	rs7111873	A	G	10650.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr11	47500400	rs12224672	C	T	736.79	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:3,31:0.91:34
chr11	47505869	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=3.606;QD=0.30;ReadPosRankSum=0.160;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:92,19:0.17:111
chr11	47587577	rs58926533	TC	T	5027.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	47600438	rs2280231	C	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:9,55:0.86:64
chr11	47609867	rs4486587	G	A	10316.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	47611316	rs10769279	C	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	47640429	rs1064608	G	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=0.15;ReadPosRankSum=0.967;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:288,38:0.12:326
chr11	47656321	rs139407275	A	ATT	215.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.078;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr11	47684450	rs6485766	C	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	47689343	rs10742817	C	T	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:27,114:0.81:141
chr11	47701528	rs12286721	C	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.592;QD=0.88;ReadPosRankSum=0.107;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:178,32:0.15:210
chr11	47701629	.	G	GA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=3.523;QD=1.13;ReadPosRankSum=1.364;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:68,17:0.20:85
chr11	47726034	.	C	CA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.082;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=10.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=1.295;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr11	47736314	rs4752863	C	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	47758449	rs34910028	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.467;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr11	47772401	rs11039366	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	47774366	rs151189779	A	AAAAC	676.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr11	47776047	rs7928954	G	A	6223.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	47776283	rs7929014	C	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:11,61:0.85:72
chr11	47786926	rs148666719	A	AAAAAGAAAAG	372.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.02;ReadPosRankSum=1.645;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr11	47788663	rs67450550	CGGTGGT	C	961.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr11	47801101	rs7114813	A	G	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.33;ReadPosRankSum=2.346;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:15,68:0.82:83
chr11	47802092	rs200363262	CTT	C	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=1.884;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr11	47806655	.	TAATAGCTA	T	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=-1.754;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr11	47806666	.	TAGAGTACCA	T	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.129;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=6.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=-2.758;SOR=3.150;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr11	47806677	.	TCAAAGCATGTA	T	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=-2.646;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr11	47806690	.	TTACAAGGAAAAC	T	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=-3.288;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr11	47813436	rs10742821	C	T	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	47814280	rs754434	A	G	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:14,85:0.86:99
chr11	47826090	rs11039402	A	C	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:22,103:0.82:125
chr11	47834346	rs10838773	G	A	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:15,85:0.85:100
chr11	47834592	rs7110289	G	A	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	47837408	rs6485786	G	C	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:36,181:0.83:217
chr11	47837638	rs7130715	G	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	47840864	rs71308358	C	CA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.581;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr11	47843133	rs7122182	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.878;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.946;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.666;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr11	47857253	rs3816605	T	C	5694.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:45,241:0.84:286
chr11	47869200	rs71045524	TG	T	407.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.46;ReadPosRankSum=-0.742;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr11	48118160	rs11599936	C	T	421.18	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr11	48118199	rs4752806	G	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	48118347	rs11382316	T	TA	3977.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	48142528	rs34681195	AT	A	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.216;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:59,37:0.39:96
chr11	48145375	rs1566734	A	C	936.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.30;ReadPosRankSum=0.253;SOR=0.546;set=HC	GT:AD:AF:DP	1/1:3,39:0.93:42
chr11	48146622	rs1503185	G	A	5106.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:52,206:0.80:258
chr11	48157869	rs2270994	T	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.643;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=5.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.053;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:195,33:0.14:228
chr11	48166267	rs4752904	G	C	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.843;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:188,39:0.17:227
chr11	48170870	rs4752908	T	G	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr11	48171793	rs10734565	T	C	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	48184971	rs3830431	CCTTT	C	981.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.477;QD=3.15;ReadPosRankSum=2.314;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:268,44:0.14:312
chr11	48184983	rs2270990	G	T	9967.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	48238421	rs10769329	T	G	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	48238549	rs11606506	G	A	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:39,122:0.76:161
chr11	48239182	rs7130086	C	A	11316.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:117,483:0.81:600
chr11	48266582	rs7120549	A	C	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	48267589	rs1503180	A	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	48285448	rs372952391	C	T	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:38,161:0.81:199
chr11	48285842	rs1503193	A	G	11525.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	48285856	rs10838850	C	T	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.179;QD=1.85;ReadPosRankSum=-0.944;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:335,71:0.17:406
chr11	48285981	rs76884411	CCTT	C	2134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.142;QD=4.92;ReadPosRankSum=-0.557;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:356,78:0.18:434
chr11	48286231	rs10838851	T	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.327;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=3.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.560;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:268,43:0.14:311
chr11	48286256	rs10838852	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=1.421;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:236,33:0.12:269
chr11	48328644	rs753095	C	T	7992.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:50,343:0.87:393
chr11	48346450	rs79776366	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.927;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr11	48346458	rs77295176	A	G	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=1.050;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:46,28:0.38:74
chr11	48346487	rs33950768	TC	T	1496.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:77,41:0.35:118
chr11	48346513	rs78206553	T	C	1991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.288;QD=13.37;ReadPosRankSum=-1.387;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:94,55:0.37:149
chr11	48346523	rs72911451	C	T	2378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.793;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.257;QD=14.16;ReadPosRankSum=-1.452;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:105,63:0.38:168
chr11	48346535	rs76964780	G	C	2690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.351;QD=13.66;ReadPosRankSum=-0.138;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:127,70:0.36:197
chr11	48346541	rs75498992	A	T	2810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.320;QD=13.01;ReadPosRankSum=-0.200;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:138,78:0.36:216
chr11	48346547	rs79042268	C	T	2804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.815;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.442;QD=11.99;ReadPosRankSum=1.135;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:155,79:0.34:234
chr11	48346551	rs77470587	C	A	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.536;QD=11.44;ReadPosRankSum=2.036;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:163,77:0.32:240
chr11	48346579	rs72911452	C	A	4444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.313;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.247;QD=13.89;ReadPosRankSum=-0.203;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:200,120:0.38:320
chr11	48346588	rs75900655	A	C	4649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.267;QD=13.68;ReadPosRankSum=0.307;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:214,126:0.37:340
chr11	48346604	rs75647397	T	G	5153.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:223,149:0.40:372
chr11	48346615	rs73463988	G	A	5524.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:229,165:0.42:394
chr11	48346660	rs138704181	TTTGCTGATC	T	6629.73	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:248,177:0.42:425
chr11	48346681	rs78490540	G	A	5151.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:229,183:0.44:412
chr11	48346729	rs73463990	G	C	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:195,195:0.50:390
chr11	48346791	rs73463994	C	T	4522.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:236,212:0.47:448
chr11	48346822	rs73463997	A	C	4818.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:268,229:0.46:497
chr11	48346843	rs73463998	C	T	4882.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:278,230:0.45:508
chr11	48346916	rs77069283	G	C	6571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=1.960;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:295,182:0.38:477
chr11	48346924	rs72911454	T	C	7156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=0.677;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:297,187:0.39:484
chr11	48346932	rs80285195	G	A	6900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-0.458;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:298,191:0.39:489
chr11	48346961	rs75493089	AA	TG	6546.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;JOINED;set=Intersection	GT:AD:AF:DP	0/1:311,181:0.37:492
chr11	48346999	rs72473367	T	G	5573.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:332,187:0.36:519
chr11	48347014	rs72473368	G	A	6822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=1.546;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:349,186:0.35:535
chr11	48347023	rs67077733	C	T	6692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=1.535;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:346,189:0.35:535
chr11	48347067	rs73464001	C	T	3760.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:331,187:0.36:518
chr11	48347100	rs73465905	C	T	3247.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:315,168:0.35:483
chr11	48347124	rs79019124	A	G	5397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.501;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:298,156:0.34:454
chr11	48347130	rs77395846	C	G	5415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=0.034;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:293,152:0.34:445
chr11	48347140	rs10838874	T	C	12578.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:43,390:0.90:433
chr11	48347142	rs79891698	C	T	5527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-0.189;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:279,152:0.35:431
chr11	48347144	rs79124801	T	C	5533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.827;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-0.598;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:273,155:0.36:428
chr11	48347267	rs73465910	T	C	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:318,212:0.40:530
chr11	48347306	rs73465911	G	T	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:329,185:0.36:514
chr11	48347342	rs76958755	G	A	4901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-1.151;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:295,143:0.33:438
chr11	48347346	rs74590631	A	T	4882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.629;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:292,134:0.31:426
chr11	48347358	rs76274696	C	T	4197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=6.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-1.747;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:257,121:0.32:378
chr11	48347363	rs77814753	C	T	4063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=3.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-1.567;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:248,115:0.32:363
chr11	48347392	rs79127479	T	C	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:188,88:0.32:276
chr11	48347419	rs73465913	A	G	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:141,75:0.35:216
chr11	48347492	rs79775762	G	A	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=0.871;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:75,61:0.45:136
chr11	48347498	rs78309417	A	T	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.991;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=0.223;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:69,59:0.46:128
chr11	48347539	rs79172951	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr11	48347563	.	CT	C	275	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=7;HapScore=2;MGOF=46;MMLQ=28;MQ=56.63;NF=2;NR=10;PP=275;QD=24.6666666667;SC=CCAAGCCTTACTTTTTTTGTA;SbPval=0.29;Source=Platypus;TC=34;TCF=3;TCR=31;TR=12;WE=48347571;WS=48347553;set=Platypus	GT:AD:AF:DP	1/0:22,12:0.35:34
chr11	48347583	.	G	A	242	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=65;MMLQ=28;MQ=56.12;NF=2;NR=9;PP=242;QD=25.1610193225;SC=ATCATGTATAGTTGTATTCCA;SbPval=0.69;Source=Platypus;TC=29;TCF=6;TCR=23;TR=11;WE=48347591;WS=48347573;set=Platypus	GT:AD:AF:DP	1/0:18,11:0.38:29
chr11	48349128	rs76530627	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-2.150;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr11	48349128	.	GTA	ATG	381	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=2;MGOF=36;MMLQ=28;MQ=60.0;NF=7;NR=2;PP=381;QD=48.274208318;SC=TGTCTTTAAAGTAAAAGTAAA;SbPval=0.41;Source=Platypus;TC=26;TCF=22;TCR=4;TR=9;WE=48349138;WS=48349118;set=Platypus	GT:AD:AF:DP	1/0:17,9:0.35:26
chr11	48349130	rs75661263	A	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.501;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-1.899;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr11	48349152	rs73465924	A	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr11	48349171	rs73465926	T	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr11	48349209	rs73465927	A	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:64,36:0.36:100
chr11	48349230	rs74884553	G	A	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.377;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:79,50:0.39:129
chr11	48349235	rs10769662	C	T	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=0.094;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:80,51:0.39:131
chr11	48349252	rs76041098	G	A	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=1.695;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:90,54:0.38:144
chr11	48349312	rs79572913	A	G	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-1.313;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:84,46:0.35:130
chr11	48349316	rs76607933	T	A	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-1.798;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:79,44:0.36:123
chr11	48349320	rs77184441	A	T	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-1.263;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:79,40:0.34:119
chr11	48349329	rs76765071	C	A	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=5.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=0.205;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:77,33:0.30:110
chr11	48349377	rs72911466	A	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr11	48349389	rs79223613	A	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-0.362;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr11	48349391	rs76599777	TG	CA	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.576;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.294;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr11	48349394	rs78755709	G	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=0.590;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr11	48349407	rs72911467	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr11	48349425	rs79941850	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr11	48349867	rs374858099	CT	C	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	48349871	.	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-3.613;QD=7.12;ReadPosRankSum=-1.962;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr11	48349903	rs11039681	G	A	639.82	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr11	48366895	rs72473369	A	C	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:72,37:0.34:109
chr11	48366958	rs76319939	T	G	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:164,115:0.41:279
chr11	48366971	rs75689989	GG	CA	5156.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;JOINED;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:190,138:0.42:328
chr11	48367050	rs113897236	T	TAG	7615.73	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:305,206:0.40:511
chr11	48367073	rs7941588	A	C	18590.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr11	48367097	rs73453179	A	G	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:372,194:0.34:566
chr11	48367133	rs79453749	C	A	6222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.553;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=0.780;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:362,174:0.32:536
chr11	48367136	rs78927905	C	T	6276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.483;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:356,173:0.33:529
chr11	48367155	rs75315666	T	A	5791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.862;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:337,158:0.32:495
chr11	48367159	rs75667244	C	T	5579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=0.566;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:330,156:0.32:486
chr11	48367163	rs74650698	A	G	5750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-0.075;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:326,159:0.33:485
chr11	48367170	rs77876442	G	A	5463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.140;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:318,154:0.33:472
chr11	48367190	rs78661795	A	T	5392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.920;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.541;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:292,147:0.33:439
chr11	48367195	rs79063955	C	T	5080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-0.308;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:283,139:0.33:422
chr11	48367249	rs74815769	C	T	5475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.041;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=5.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.620;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:246,150:0.38:396
chr11	48367252	rs76287086	G	A	5475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=0.197;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:251,148:0.37:399
chr11	48367311	rs73453180	T	C	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:248,151:0.38:399
chr11	48367363	rs73453183	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:215,104:0.33:319
chr11	48367387	rs78788561	C	T	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:208,70:0.25:278
chr11	48367419	rs77576379	G	A	2975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=6.232;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.788;QD=11.67;ReadPosRankSum=2.348;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:157,98:0.38:255
chr11	48367424	rs77976451	C	G	2990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=4.457;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.736;QD=11.92;ReadPosRankSum=1.602;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:151,100:0.40:251
chr11	48367455	rs79175163	G	A	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:122,66:0.35:188
chr11	48367469	rs79686513	TG	CA	2662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.913;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.909;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.977;QD=16.34;ReadPosRankSum=0.173;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:92,71:0.44:163
chr11	48367474	rs75116918	A	G	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.964;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.950;QD=16.61;ReadPosRankSum=-0.293;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:87,69:0.44:156
chr11	48367499	rs72896822	A	G	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=8.523;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.705;QD=14.65;ReadPosRankSum=-0.341;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:60,41:0.41:101
chr11	48367505	.	G	T	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=6.697;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.407;QD=10.37;ReadPosRankSum=1.611;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:49,47:0.49:96
chr11	48367511	rs72896823	T	G	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.990;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.779;QD=15.44;ReadPosRankSum=-0.260;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:51,32:0.39:83
chr11	48373632	rs4882248	T	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	48373748	rs73453188	C	G	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:107,56:0.34:163
chr11	48373770	rs73453191	T	A	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:144,70:0.33:214
chr11	48373797	rs72896825	C	T	2969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.348;QD=10.68;ReadPosRankSum=2.477;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:192,86:0.31:278
chr11	48373805	rs75618010	G	A	3316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.031;QD=11.76;ReadPosRankSum=2.022;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:190,92:0.33:282
chr11	48373815	rs74350365	A	G	3610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.968;QD=12.16;ReadPosRankSum=1.032;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:196,101:0.34:297
chr11	48373817	rs75951679	C	T	3898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.963;QD=13.17;ReadPosRankSum=0.880;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:195,101:0.34:296
chr11	48373820	rs3898634	A	C	3973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.914;QD=12.86;ReadPosRankSum=0.005;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:200,109:0.35:309
chr11	48373827	rs80081241	G	A	4327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.862;QD=13.40;ReadPosRankSum=-0.960;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:205,118:0.37:323
chr11	48373833	rs75965588	GA	AG	4521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.865;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.834;QD=13.58;ReadPosRankSum=-1.023;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:209,124:0.37:333
chr11	48373885	rs76292854	A	G	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:218,131:0.38:349
chr11	48373900	rs77877396	A	G	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:230,138:0.38:368
chr11	48373936	rs76304554	A	G	3344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-1.860;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:178,127:0.42:305
chr11	48373946	rs12797020	C	A	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:154,118:0.43:272
chr11	48373976	rs80225178	T	G	2760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.087;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:127,79:0.38:206
chr11	48373986	rs12420054	A	G	2646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-0.451;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:104,70:0.40:174
chr11	48374000	rs112772888	C	CT	881.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:83,48:0.37:131
chr11	48374031	rs72896827	G	A	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=5.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.147;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:56,42:0.43:98
chr11	48374041	rs72896828	T	C	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.27;ReadPosRankSum=0.275;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:46,32:0.41:78
chr11	48386956	.	C	CA	637.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr11	48387035	rs71220564	C	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:95,52:0.35:147
chr11	48387098	rs77594589	A	C	3382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.352;QD=12.96;ReadPosRankSum=-1.581;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:168,93:0.36:261
chr11	48387107	rs77606603	T	C	3455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=-1.458;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:169,95:0.36:264
chr11	48387115	rs75003399	G	A	3214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-0.164;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:174,90:0.34:264
chr11	48387118	rs79339252	G	A	3172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=2.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=0.575;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:176,87:0.33:263
chr11	48387154	rs72473370	A	G	2933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=-0.500;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:167,88:0.35:255
chr11	48387164	rs72473371	G	A	2966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-2.107;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:154,85:0.36:239
chr11	48387201	rs77053100	G	A	1620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.166;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-0.446;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:152,50:0.25:202
chr11	48387206	rs76817095	T	C	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.098;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.655;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:154,50:0.25:204
chr11	48387210	rs78428763	CC	TG	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.603;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-0.377;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:158,49:0.24:207
chr11	48387237	rs72898877	C	T	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.142;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.954;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:164,41:0.20:205
chr11	48387254	rs75441735	A	G	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.454;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-0.464;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:171,48:0.22:219
chr11	48387258	rs78030134	C	T	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.377;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-0.430;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:172,48:0.22:220
chr11	48387262	rs75430864	G	A	1547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.624;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.724;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:179,51:0.22:230
chr11	48387278	rs139139147	C	CACTGTCCTTCTGT	2014.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.928;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=7.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-1.125;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:182,55:0.23:237
chr11	48387285	.	A	AGTCTTTAGTAG	2128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.440;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=13.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.965;SOR=1.386;set=HC	GT:AD:AF:DP	0/1:175,56:0.24:231
chr11	48387301	rs76220342	G	A	2216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=6.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-2.034;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:203,81:0.29:284
chr11	48387335	rs73460769	C	A	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:226,111:0.33:337
chr11	48387370	rs73460772	A	G	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:227,147:0.39:374
chr11	48387424	rs61917478	G	T	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:230,172:0.43:402
chr11	48387490	rs77144540	G	A	4205.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:314,163:0.34:477
chr11	48387506	rs72898882	A	G	4246.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:325,159:0.33:484
chr11	48387526	rs78378263	G	T	5430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.364;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-0.414;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:328,157:0.32:485
chr11	48387535	rs72898883	T	C	5563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=4.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=-0.204;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:331,153:0.32:484
chr11	48387540	rs72898885	G	T	5455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=4.437;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.475;QD=11.13;ReadPosRankSum=-0.466;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:335,155:0.32:490
chr11	48387580	rs78299098	G	T	4545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=4.637;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.189;QD=9.49;ReadPosRankSum=0.245;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:343,136:0.28:479
chr11	48387582	rs75027745	C	T	4743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=3.688;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.239;QD=10.05;ReadPosRankSum=0.585;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:341,131:0.28:472
chr11	48387584	rs75821991	A	T	4730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.336;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.232;QD=9.98;ReadPosRankSum=0.346;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:342,132:0.28:474
chr11	48387591	rs75297075	A	G	4369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.298;QD=9.16;ReadPosRankSum=0.471;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:348,129:0.27:477
chr11	48387604	rs72898886	C	T	4165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=2.018;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.310;QD=8.55;ReadPosRankSum=-0.623;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:356,131:0.27:487
chr11	48387630	rs73460777	C	T	3662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.062;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.458;QD=7.83;ReadPosRankSum=0.196;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:350,118:0.25:468
chr11	48387647	rs75615667	A	G	3905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.969;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.294;QD=8.60;ReadPosRankSum=-0.952;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:331,123:0.27:454
chr11	48387679	rs76209049	A	G	4027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.576;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.245;QD=9.45;ReadPosRankSum=0.138;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:308,118:0.28:426
chr11	48387683	rs67755516	GT	G	4133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.528;QD=9.87;ReadPosRankSum=-0.654;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:298,121:0.29:419
chr11	48387689	rs75371569	T	C	4120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.496;QD=10.05;ReadPosRankSum=-0.493;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:290,120:0.29:410
chr11	48387705	rs34926479	C	T	3609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.582;QD=8.55;ReadPosRankSum=0.722;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:301,121:0.29:422
chr11	48387737	rs73460780	G	C	4351.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:289,156:0.35:445
chr11	48387757	rs74557904	A	C	4805.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:272,160:0.37:432
chr11	48387780	rs76329018	C	T	5809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.317;QD=13.17;ReadPosRankSum=1.424;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:279,162:0.37:441
chr11	48387789	rs80222485	C	G	5817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.290;QD=13.13;ReadPosRankSum=1.030;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:276,167:0.38:443
chr11	48387825	rs75650204	T	G	6155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.361;QD=12.74;ReadPosRankSum=1.312;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:313,170:0.35:483
chr11	48387833	rs79515387	T	C	6409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.356;QD=13.11;ReadPosRankSum=0.413;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:316,173:0.35:489
chr11	48387850	rs73460781	G	T	6279.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:331,184:0.36:515
chr11	48387890	rs74623688	T	C	5675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.210;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:334,161:0.33:495
chr11	48387894	rs75065468	C	T	5816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-0.064;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:340,162:0.32:502
chr11	48387900	rs74338058	G	A	5821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-0.091;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:338,161:0.32:499
chr11	48387917	rs66829866	AT	A	5115.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.288;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.267;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:296,142:0.32:438
chr11	48387919	rs114441034	G	A	5082.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.278;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:291,140:0.32:431
chr11	48387930	rs75939575	T	C	4557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-0.806;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:260,126:0.33:386
chr11	48387945	rs139770813	C	CCA	4198.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-1.067;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:232,116:0.33:348
chr11	48387946	rs114053360	G	T	4207.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.913;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:232,113:0.33:345
chr11	48387960	rs79688019	T	C	3556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-0.410;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:199,95:0.32:294
chr11	48387978	rs78160589	T	A	2527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.855;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=1.851;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:153,63:0.29:216
chr11	48387983	rs75819836	T	C	2171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.968;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=1.209;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:148,65:0.31:213
chr11	48388047	rs75982328	T	C	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.115;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-3.062;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr11	48388047	.	TTA	CTG	1136	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=2;MGOF=74;MMLQ=28;MQ=60.0;NF=5;NR=16;PP=1136;QD=56.6413273744;SC=TTGGTCAGGATTATTTTCTGT;SbPval=0.37;Source=Platypus;TC=58;TCF=11;TCR=47;TR=21;WE=48388057;WS=48388037;set=Platypus	GT:AD:AF:DP	1/0:37,21:0.36:58
chr11	48388049	rs77697332	A	G	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-2.023;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr11	48388067	rs73460782	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr11	48388094	.	C	CTT	2286	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=4;MGOF=88;MMLQ=27;MQ=60.0;NF=7;NR=10;PP=2286;QD=137.0;SC=AAACCCAAGACTAAGTTGAGC;SbPval=0.04;Source=Platypus;TC=37;TCF=7;TCR=30;TR=17;WE=48388123;WS=48388084;set=Platypus	GT:AD:AF:DP	0/1:20,17:0.46:37
chr11	48388487	rs78414756	C	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr11	48388524	rs76789954	C	T	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.255;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,21:0.36:59
chr11	48388524	.	CAA	TAG	968	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=2;HapScore=1;MGOF=78;MMLQ=28;MQ=60.0;NF=20;NR=1;PP=968;QD=48.6413273744;SC=ATTTCAGAATCAACTGAACTG;SbPval=0.76;Source=Platypus;TC=59;TCF=55;TCR=4;TR=21;WE=48388534;WS=48388514;set=Platypus	GT:AD:AF:DP	0/1:38,21:0.36:59
chr11	48388526	rs77473022	A	G	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.543;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-0.517;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,21:0.36:59
chr11	48388542	rs77282201	G	A	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=-1.462;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:53,33:0.38:86
chr11	48388544	rs74346885	T	C	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-1.360;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:55,34:0.38:89
chr11	48388553	rs80082776	C	G	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=-1.842;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:63,42:0.40:105
chr11	48388563	rs77148147	CT	AG	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-1.313;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:70,45:0.39:115
chr11	48388567	rs79767657	A	C	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.968;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:75,47:0.39:122
chr11	48388571	rs79079495	C	T	1857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-0.259;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:83,49:0.37:132
chr11	48388583	rs77992774	A	T	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:105,57:0.35:162
chr11	48388610	rs79108820	T	G	2858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=1.688;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:140,77:0.35:217
chr11	48388612	rs76366705	T	C	2855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.932;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=1.525;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:142,79:0.36:221
chr11	48388614	rs146852809	T	C	2888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=1.513;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:142,79:0.36:221
chr11	48388621	rs75849499	ACA	GTC	2930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=1.876;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:152,81:0.35:233
chr11	48388641	rs80267937	G	A	4270.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:196,114:0.37:310
chr11	48388657	rs80000751	G	A	4758.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:220,128:0.37:348
chr11	48388681	rs76712816	G	A	5301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-0.450;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:249,142:0.36:391
chr11	48388698	rs77483743	C	T	4542.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:232,126:0.35:358
chr11	48388717	rs78132200	T	C	4122.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:219,117:0.35:336
chr11	48388782	rs76039310	A	G	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:112,67:0.37:179
chr11	48388833	rs73460789	A	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr11	48453678	rs600750	G	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr11	48453787	rs4882063	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=0.857;QD=1.97;ReadPosRankSum=2.355;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:122,28:0.19:150
chr11	48510777	rs7103992	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.712;QD=0.85;ReadPosRankSum=1.978;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:207,34:0.14:241
chr11	48511044	rs374666205	G	A	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:30,151:0.83:181
chr11	48997107	rs2047941	G	A	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:27,143:0.84:170
chr11	48997334	rs1987879	T	G	6931.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:45,275:0.86:320
chr11	48997592	rs1813231	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	48999833	rs12576844	G	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:6,37:0.86:43
chr11	49000522	rs1963629	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.003;QD=0.60;ReadPosRankSum=-3.810;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:203,33:0.14:236
chr11	49000558	rs11040198	G	A	5854.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:47,253:0.84:300
chr11	49002343	rs9783302	T	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=9.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.435;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr11	49056627	rs144534447	CT	C	1788.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-3.926;QD=8.52;ReadPosRankSum=-0.073;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:72,138:0.66:210
chr11	49075605	rs2851535	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=1.272;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:151,23:0.13:174
chr11	49076963	rs34650085	C	CAA	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.035;QD=1.06;ReadPosRankSum=-0.450;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:121,29:0.19:150
chr11	49144969	rs199997495	G	GT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=1.334;QD=1.03;ReadPosRankSum=0.197;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr11	49145048	rs6485962	T	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr11	49145838	rs7933115	C	T	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:35,132:0.79:167
chr11	49145993	rs150678350	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-3.890;QD=0.37;ReadPosRankSum=0.530;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:212,28:0.12:240
chr11	49170334	rs202694	T	C	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:14,50:0.78:64
chr11	49176057	rs2988340	C	T	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-2.891;QD=16.00;ReadPosRankSum=0.902;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,36:0.69:52
chr11	49192667	rs10839236	C	T	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	49192905	rs34828796	GA	G	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.597;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=0.038;QD=9.76;ReadPosRankSum=-0.416;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:12,34:0.74:46
chr11	49195090	rs202718	T	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.14;QD=26.91;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	49195127	rs146564769	C	CA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.797;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr11	49195129	rs67031328	G	A	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=36.03;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	49196332	rs4929893	CG	TC	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	49196652	rs202715	C	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	49329552	rs1164670	G	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-6.168;QD=1.06;ReadPosRankSum=-0.882;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:252,44:0.15:296
chr11	49356400	rs34397343	GTT	GT,G	321.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	1/1:0.95:21
chr11	49372872	rs3915110	G	A	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	49400965	rs3974576	T	C	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	49401125	rs7102702	T	G	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	49597799	rs7131345	C	T	5342.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	49598178	rs7101761	G	A	7745.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;MQ=59.09;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	49598207	rs3750925	T	C	11656.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.91;QD=45.53;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	49598207	.	TCT	CCC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=23;MQ=55.82;NF=119;NR=106;PP=2947;QD=20;SC=TCCTCTTCCTTCTGCTCCAAG;SbPval=0.59;Source=Platypus;TC=232;TCF=120;TCR=112;TR=225;WE=49598217;WS=49598197;set=Platypus	GT:AD:AF:DP	1/1:7,225:0.97:232
chr11	49598209	rs7939515	T	C	11656.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.84;QD=44.66;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	49637416	rs7125677	A	G	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	49655814	rs144145381	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.83;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	49729299	rs67084465	AC	A	4749.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	49813442	rs7943083	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	49813637	rs11530434	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	49829193	rs35198519	AT	A	4629.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:3,207:0.99:210
chr11	49973979	rs28378220	C	T	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:27,169:0.86:196
chr11	49974371	rs28662375	G	A	10027.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	50003191	rs4598671	C	A	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	51516000	rs11246607	C	T	7651.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	51516036	rs11246608	G	A	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	51516144	rs11246609	A	G	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.65;QD=29.79;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	51527499	rs201575187	G	T	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:39,95:0.71:134
chr11	51527637	rs111467734	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-1.029;QD=2.57;ReadPosRankSum=0.365;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr11	55111238	rs11229158	C	A	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	55111584	rs10896659	A	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	55322211	rs9804659	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=3.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.734;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:220,37:0.14:257
chr11	55322539	rs12790125	G	A	9297.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:89,389:0.81:478
chr11	55339462	rs71488974	G	A	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:9,62:0.87:71
chr11	55339676	rs12800642	G	T	7949.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:43,335:0.89:378
chr11	55339702	rs34100491	C	T	8470.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:44,348:0.89:392
chr11	55339798	rs557667	C	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.754;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:497,82:0.14:579
chr11	55339829	rs557590	A	G	17402.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr11	55340315	rs141007915	T	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.504;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:389,66:0.15:455
chr11	55340379	rs559449	T	C	13210.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr11	55371807	rs11230346	A	T	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	55419265	rs145481399	A	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	55433040	rs11230600	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.363;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:151,39:0.21:190
chr11	55541098	rs297118	G	A	9190.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	55563776	rs297054	T	G	13004.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:1,450:1.00:451
chr11	55587117	rs297082	T	A	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	55587511	rs297081	A	G	10705.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr11	55587914	rs55832853	A	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=1.346;QD=0.94;ReadPosRankSum=-0.552;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:191,33:0.15:224
chr11	55606208	rs12361036	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr11	55606472	rs62001008	T	C	6262.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:47,275:0.85:322
chr11	55607057	rs61896326	C	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.632;QD=1.40;ReadPosRankSum=1.208;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:156,30:0.16:186
chr11	55656437	.	A	AT	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.620;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:96,51:0.35:147
chr11	55656483	rs7483200	T	A	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:21,76:0.78:97
chr11	55681336	rs11231529	G	A	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:24,146:0.86:170
chr11	55681375	rs17511601	T	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-1.241;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:139,25:0.15:164
chr11	55681416	rs17596422	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.154;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-0.822;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:160,20:0.11:180
chr11	55681494	rs2457239	G	A	8309.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	55681580	rs17596519	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.030;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:283,42:0.13:325
chr11	55681942	rs17511797	G	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=3.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=1.017;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:152,31:0.17:183
chr11	55682111	rs2940752	T	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	55703010	rs9665863	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.406;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.726;SOR=2.256;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr11	55703247	rs4465383	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.024;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:176,30:0.15:206
chr11	55703650	rs9666086	A	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.766;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:271,57:0.17:328
chr11	55703766	rs17597589	A	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.806;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:345,76:0.18:421
chr11	55703861	rs17597625	T	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-1.097;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:222,52:0.19:274
chr11	55703981	rs35841857	T	TA	643.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=6.518;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	55734972	rs11231705	A	T	567.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	55734983	rs61896161	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr11	55735031	rs61896162	A	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.128;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr11	55735106	rs61896163	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.341;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:109,16:0.13:125
chr11	55735518	rs61896165	G	A	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=1.495;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:349,64:0.15:413
chr11	55735579	rs61896166	A	G	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.657;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:280,48:0.15:328
chr11	55735649	rs61896167	C	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=1.307;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:219,31:0.12:250
chr11	55735808	rs78226543	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.229;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:78,14:0.15:92
chr11	55735813	rs80245253	G	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.634;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr11	55735848	rs75026138	A	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.200;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr11	55735857	rs76700680	A	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.228;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr11	55746891	rs7481466	G	A	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	55747013	rs17527788	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.19;ReadPosRankSum=1.403;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:304,42:0.12:346
chr11	55747136	rs12099295	G	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.025;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:294,38:0.11:332
chr11	55761221	rs2449134	C	T	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=25.64;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	55761738	rs2128152	T	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	55762060	rs71490418	T	C	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:12,77:0.87:89
chr11	55762167	rs34270187	CA	C	162.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=0.454;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr11	55783058	rs7933387	T	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.696;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=1.496;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr11	55783061	rs7933389	T	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=8.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=1.943;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr11	55783220	rs61888539	A	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=5.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.732;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:140,24:0.15:164
chr11	55798152	rs1482011	G	A	11857.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr11	55798237	rs17528782	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-1.805;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:332,52:0.14:384
chr11	55798533	rs17528803	A	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.349;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:341,64:0.16:405
chr11	55798761	rs61889974	T	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.567;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.785;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:56,8:0.12:64
chr11	55798764	rs61889975	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.500;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:53,5:0.09:58
chr11	55860780	rs1842700	G	A	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	55861153	rs17603011	A	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.545;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.872;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:374,61:0.14:435
chr11	55861277	rs138372442	GT	G	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.688;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:450,57:0.11:507
chr11	55861297	rs117967749	A	G	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-1.204;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:447,56:0.11:503
chr11	55861306	rs144690814	CA	C	834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.756;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:453,55:0.11:508
chr11	55861484	rs61887096	A	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.986;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:172,26:0.13:198
chr11	55861650	rs61887097	C	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:37,12:0.24:49
chr11	55872832	rs61750923	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-6.236;QD=0.56;ReadPosRankSum=1.054;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:425,64:0.13:489
chr11	55872876	rs2512961	C	T	9228.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:55,375:0.87:430
chr11	55872990	rs61734403	G	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-16.911;QD=0.43;ReadPosRankSum=0.981;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:586,51:0.08:637
chr11	55873024	rs2449148	A	G	22430.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:0,758:1.00:758
chr11	55873293	rs61731255	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.959;QD=0.49;ReadPosRankSum=0.976;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:163,24:0.13:187
chr11	55873368	rs1842696	G	A	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	55889790	rs2035408	G	T	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	55889815	rs7112887	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-4.631;QD=0.30;ReadPosRankSum=0.655;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:149,21:0.12:170
chr11	55890156	rs61746202	G	T	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-14.223;QD=1.58;ReadPosRankSum=0.049;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:458,94:0.17:552
chr11	55890257	rs1842691	C	T	13412.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr11	55890273	rs61743852	T	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-10.367;QD=0.19;ReadPosRankSum=-0.957;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:433,51:0.11:484
chr11	55890320	rs61743838	G	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-7.277;QD=0.19;ReadPosRankSum=-0.603;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:600,80:0.12:680
chr11	55890355	rs78856925	TG	CT	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-10.302;QD=1.98;ReadPosRankSum=1.221;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:667,83:0.11:750
chr11	55890571	rs61743017	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=9.468;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=0.33;ReadPosRankSum=0.524;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:192,24:0.11:216
chr11	55890609	rs61743026	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.508;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:186,29:0.13:215
chr11	55890726	rs61747871	G	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.913;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:139,23:0.14:162
chr11	55904751	rs1947923	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.650;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:130,23:0.15:153
chr11	55905025	rs1947924	T	G	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=3.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.276;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:314,82:0.21:396
chr11	55905294	.	C	T	172.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	55927442	rs61746523	T	C	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.319;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:227,41:0.15:268
chr11	55999503	rs12270451	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr11	55999737	rs7121880	G	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=0.050;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:201,28:0.12:229
chr11	55999897	rs7122000	G	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.289;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:394,58:0.13:452
chr11	56000288	rs7122514	G	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.673;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.549;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:157,28:0.15:185
chr11	56000403	rs10791893	C	G	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	56000471	rs11227599	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.495;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:213,41:0.16:254
chr11	56000581	rs76457874	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.625;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:199,38:0.16:237
chr11	56020244	rs61746551	T	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-10.294;QD=1.48;ReadPosRankSum=0.792;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:468,91:0.16:559
chr11	56043702	rs7125697	G	C	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.183;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:529,90:0.15:619
chr11	56058474	rs17540861	T	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.673;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:264,48:0.15:312
chr11	56086147	rs960193	T	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=1.072;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:368,59:0.14:427
chr11	56113516	rs1905055	T	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-2.373;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:200,39:0.16:239
chr11	56113764	rs17614327	G	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-1.806;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:501,84:0.14:585
chr11	56127746	rs7942390	A	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr11	56127829	rs7927015	G	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-8.448;QD=0.38;ReadPosRankSum=1.472;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:299,43:0.13:342
chr11	56128062	rs7942730	A	T	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.950;QD=3.42;ReadPosRankSum=0.786;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:160,47:0.23:207
chr11	56128081	rs10896290	A	G	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:45,133:0.75:178
chr11	56128406	rs62001032	A	G	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.747;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:214,40:0.16:254
chr11	56128524	rs7928704	C	T	11152.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr11	56142966	rs61903545	T	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.865;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.430;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr11	56143108	rs74639624	C	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.421;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=26.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.13;ReadPosRankSum=-3.365;SOR=3.577;set=HC	GT:AD:AF:DP	0/1:233,19:0.08:252
chr11	56143125	rs74467122	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=4.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-3.300;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:253,37:0.13:290
chr11	56143156	rs11228165	C	T	1996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-0.349;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:280,67:0.19:347
chr11	56143158	rs11228166	A	G	1996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.310;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:282,70:0.20:352
chr11	56143198	rs80034856	C	T	4023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.141;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:285,113:0.28:398
chr11	56143204	rs79445223	C	T	4242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.553;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:286,122:0.30:408
chr11	56143207	rs75547926	C	T	4542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-0.627;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:287,125:0.30:412
chr11	56143216	rs76044076	G	A	5027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=3.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-0.166;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:307,136:0.31:443
chr11	56143225	rs77854836	CT	TC	5001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=4.522;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.437;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:316,140:0.31:456
chr11	56143250	rs76390346	G	A	5692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=1.957;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:353,162:0.31:515
chr11	56143252	rs75101573	G	A	5758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.272;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=2.592;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:360,161:0.31:521
chr11	56143255	.	T	TGA	5894.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=2.672;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:361,163:0.31:524
chr11	56143257	rs77515824	C	A	6019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=3.000;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:370,167:0.31:537
chr11	56143259	.	AGT	A	5968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0.000;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=2.726;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:371,170:0.31:541
chr11	56143357	rs76949582	G	A	4632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-1.330;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:295,132:0.31:427
chr11	56143360	rs79469149	C	T	4653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-1.149;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:297,130:0.30:427
chr11	56143370	rs77605888	GT	AG	4269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.985;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=11.321;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-0.241;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:281,111:0.28:392
chr11	56143375	rs75240955	A	T	4158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.968;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=5.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-1.114;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:275,114:0.29:389
chr11	56143378	rs80298942	C	G	4266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=5.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-1.452;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:273,115:0.30:388
chr11	56143381	rs78405432	TG	CA	4170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.543;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=1.832;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.842;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:281,114:0.29:395
chr11	56143394	rs74667177	A	G	4205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.086;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.665;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:292,120:0.29:412
chr11	56143399	rs75482598	AC	GT	4269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.449;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=3.736;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.905;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:293,122:0.29:415
chr11	56143402	rs77968220	G	A	4389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.686;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:299,122:0.29:421
chr11	56143408	rs79327545	C	T	4491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=5.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-1.438;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:297,126:0.30:423
chr11	56143411	rs77484944	T	C	4446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.889;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=8.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-0.781;SOR=1.354;set=HC	GT:AD:AF:DP	0/1:303,122:0.29:425
chr11	56143414	rs74329097	CA	GG	4298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.511;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=8.626;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.395;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:316,123:0.28:439
chr11	56143424	.	A	ACGGC	3505.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.429;ClippingRankSum=0.000;DP=454;ExcessHet=3.0103;FS=10.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-1.226;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:336,117:0.26:453
chr11	56143425	.	TATCA	T	3525.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=13.710;ClippingRankSum=0.000;DP=469;ExcessHet=3.0103;FS=14.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-1.459;SOR=1.638;set=HC	GT:AD:AF:DP	0/1:345,122:0.26:467
chr11	56143432	rs78396581	A	G	4541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.589;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=11.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-1.489;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:334,131:0.28:465
chr11	56143434	rs10791961	C	G	17312.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr11	56143489	rs74711788	AT	GA	8443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.002;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=0.559;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.020;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:472,232:0.33:704
chr11	56143501	rs12272237	T	G	9431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.574;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=0.386;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:509,258:0.34:767
chr11	56143508	rs10791962	A	T	10355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.320;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:531,277:0.34:808
chr11	56143510	rs10791963	T	C	10556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=813;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.047;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:528,281:0.35:809
chr11	56143528	rs10791964	A	G	6388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.815;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=-0.056;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:554,309:0.36:863
chr11	56143534	rs78854227	A	G	11962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.856;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=4.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=0.022;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:554,320:0.37:874
chr11	56143537	rs74691432	A	T	12091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.170;ClippingRankSum=0.000;DB;DP=894;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.668;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:568,323:0.36:891
chr11	56143539	rs75226392	T	C	12132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.733;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=1.214;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:581,325:0.36:906
chr11	56143543	rs76579014	TT	CC	12543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.006;ClippingRankSum=0.000;DB;DP=939;ExcessHet=3.0103;FS=4.279;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=1.871;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:604,331:0.35:935
chr11	56143556	rs80334520	T	A	13209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.560;ClippingRankSum=0.000;DB;DP=974;ExcessHet=3.0103;FS=7.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=1.352;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:618,351:0.36:969
chr11	56143559	rs74603674	C	T	13764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.375;ClippingRankSum=0.000;DB;DP=1000;ExcessHet=3.0103;FS=8.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=1.850;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:639,356:0.36:995
chr11	56143561	rs75242425	AA	GG	13910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.159;ClippingRankSum=0.000;DB;DP=1016;ExcessHet=3.0103;FS=9.849;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.828;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:641,371:0.37:1012
chr11	56143564	rs77640279	G	T	15216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.428;ClippingRankSum=0.000;DB;DP=1034;ExcessHet=3.0103;FS=9.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.944;SOR=1.313;set=HC	GT:AD:AF:DP	0/1:653,377:0.37:1030
chr11	56143570	rs11228169	A	G	15459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DB;DP=1126;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-2.829;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:669,453:0.40:1122
chr11	56143690	rs4990123	C	A	11826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.769;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=10.725;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=17.19;ReadPosRankSum=0.047;SOR=1.283;set=HC	GT:AD:AF:DP	0/1:365,323:0.47:688
chr11	56143696	rs4990122	C	T	11299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=10.921;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=17.57;ReadPosRankSum=0.740;SOR=1.374;set=HC	GT:AD:AF:DP	0/1:352,291:0.45:643
chr11	56143699	rs4990121	T	G	10747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.575;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=12.496;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=17.22;ReadPosRankSum=1.725;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:352,272:0.44:624
chr11	56143716	rs10896309	TG	CA	8807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.028;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=21.910;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=15.96;ReadPosRankSum=1.493;SOR=1.902;set=HC	GT:AD:AF:DP	0/1:332,220:0.40:552
chr11	56143723	rs12272349	T	C	7652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.499;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=24.301;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.95;ReadPosRankSum=1.189;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:314,198:0.39:512
chr11	56143725	rs77042014	C	G	7496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.614;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=24.301;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.87;ReadPosRankSum=0.823;SOR=1.948;set=HC	GT:AD:AF:DP	0/1:309,195:0.39:504
chr11	56143729	rs55888197	CC	TG	6941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=24.887;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.576;SOR=2.044;set=HC	GT:AD:AF:DP	0/1:297,183:0.38:480
chr11	56143762	rs79307272	C	T	4485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=67.873;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-2.630;SOR=2.706;set=HC	GT:AD:AF:DP	0/1:256,128:0.33:384
chr11	56143767	rs79705206	C	T	4338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=61.792;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-2.855;SOR=2.610;set=HC	GT:AD:AF:DP	0/1:250,120:0.32:370
chr11	56143782	.	T	TGA	3386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=53.768;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-2.014;SOR=2.548;set=HC	GT:AD:AF:DP	0/1:248,100:0.29:348
chr11	56143784	.	CAT	C	3371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.459;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=63.333;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-1.115;SOR=2.927;set=HC	GT:AD:AF:DP	0/1:249,90:0.27:339
chr11	56143795	.	G	A	2518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=45.620;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-0.368;SOR=2.502;set=HC	GT:AD:AF:DP	0/1:233,77:0.25:310
chr11	56143803	rs202193035	AG	GC	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.521;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=38.469;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=7.27;ReadPosRankSum=0.561;SOR=2.374;set=HC	GT:AD:AF:DP	0/1:233,69:0.23:302
chr11	56143807	rs201727202	G	A	2119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.984;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=39.396;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=7.04;ReadPosRankSum=0.993;SOR=2.436;set=HC	GT:AD:AF:DP	0/1:235,66:0.22:301
chr11	56143810	rs201982103	T	C	2119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.374;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=38.473;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=7.21;ReadPosRankSum=0.796;SOR=2.483;set=HC	GT:AD:AF:DP	0/1:230,64:0.22:294
chr11	56143816	rs111512467	G	C	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.587;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=33.746;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=6.77;ReadPosRankSum=0.183;SOR=2.318;set=HC	GT:AD:AF:DP	0/1:225,63:0.22:288
chr11	56143819	rs113312059	G	C	1822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.400;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=37.865;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=6.33;ReadPosRankSum=0.901;SOR=2.532;set=HC	GT:AD:AF:DP	0/1:229,59:0.20:288
chr11	56143823	rs77614949	G	A	1702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=33.493;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.057;SOR=2.399;set=HC	GT:AD:AF:DP	0/1:233,57:0.20:290
chr11	56143858	rs78068762	G	C	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.538;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=10.680;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.864;QD=4.23;ReadPosRankSum=-0.103;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:208,42:0.17:250
chr11	56143864	rs111260371	C	G	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=9.685;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-4.043;QD=4.10;ReadPosRankSum=-0.048;SOR=1.457;set=HC	GT:AD:AF:DP	0/1:206,38:0.16:244
chr11	56143867	rs111341120	T	C	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.527;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=8.337;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-4.077;QD=3.73;ReadPosRankSum=-0.910;SOR=1.428;set=HC	GT:AD:AF:DP	0/1:204,37:0.15:241
chr11	56143882	rs113061820	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=9.420;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-4.411;QD=2.83;ReadPosRankSum=-2.128;SOR=1.559;set=HC	GT:AD:AF:DP	0/1:200,31:0.13:231
chr11	56143885	rs111871244	T	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.273;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=9.401;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-4.473;QD=2.71;ReadPosRankSum=-2.394;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:199,30:0.13:229
chr11	56143891	rs112265664	T	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.294;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=5.281;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.781;QD=2.25;ReadPosRankSum=-1.975;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:197,26:0.12:223
chr11	56143898	rs373392784	G	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.461;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-6.103;QD=1.35;ReadPosRankSum=-1.328;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:184,20:0.10:204
chr11	56143900	rs202086525	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.187;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-6.119;QD=1.21;ReadPosRankSum=-1.575;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:185,20:0.10:205
chr11	56143903	.	G	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-6.585;QD=0.81;ReadPosRankSum=-1.011;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:182,17:0.09:199
chr11	56143906	rs201664860	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-6.603;QD=0.66;ReadPosRankSum=-1.363;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:183,17:0.09:200
chr11	56143907	rs374830614	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-6.567;QD=0.68;ReadPosRankSum=-1.577;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:181,17:0.09:198
chr11	56143966	rs12291978	C	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:23,76:0.77:99
chr11	56143977	rs12272403	A	G	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	56185159	rs7930678	A	G	5530.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:40,221:0.85:261
chr11	56185327	rs7933772	T	C	5016.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:33,200:0.86:233
chr11	56185345	rs6591324	A	G	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.00;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	56185345	.	AAT	GAC,GAT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=60.0;NF=17,118;NR=12,108;PP=179,2962;QD=8.01613361594;SC=GCGACATAGCAATCGTAGGCC;SbPval=0.74;Source=Platypus;TC=227;TCF=119;TCR=108;TR=29,226;WE=56185355;WS=56185335;set=Platypus	GT:AF:DP	0/1:0.13:227
chr11	56185347	rs7111634	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.068;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:194,34:0.15:228
chr11	56185401	rs7123108	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.146;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:218,54:0.20:272
chr11	56185689	rs7931261	A	G	5282.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:34,222:0.87:256
chr11	56230069	rs1945237	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=1.932;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:89,15:0.14:104
chr11	56230120	rs61902868	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.428;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:80,17:0.18:97
chr11	56230328	rs61902869	G	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=1.769;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:259,36:0.12:295
chr11	56230473	rs61902870	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=-0.585;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:385,53:0.12:438
chr11	56230611	rs79837116	G	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-0.396;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:273,35:0.11:308
chr11	56230678	rs61902871	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.788;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:314,49:0.13:363
chr11	56237410	rs617315	A	G	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:34,151:0.82:185
chr11	56237722	rs605734	T	A	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:22,164:0.88:186
chr11	56237966	rs77400854	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:52,13:0.20:65
chr11	56238047	rs35496190	A	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=-0.705;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr11	56257877	rs76575662	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:37,12:0.24:49
chr11	56309751	rs61904072	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.931;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr11	56309896	rs17547207	C	G	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.242;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:121,27:0.18:148
chr11	56310222	rs628524	C	T	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr11	56310356	rs17547284	A	T	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.774;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:167,44:0.21:211
chr11	56310877	rs66945922	C	CTT	928.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	56344260	rs10896488	A	G	5139.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:39,214:0.85:253
chr11	56344843	rs148438199	CCATTGAAG	C	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-2.981;QD=3.95;ReadPosRankSum=1.649;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:148,28:0.16:176
chr11	56344993	rs10792043	C	A	5452.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:37,213:0.85:250
chr11	56380546	rs72003051	CCAGA	C	7600.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:41,188:0.82:229
chr11	56431075	rs76645013	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.021;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr11	56431216	rs11228710	C	T	6719.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	56467757	.	CACG	C	610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=0.094;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr11	56467763	.	A	AGAT	610.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-1.879;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr11	56467764	rs78916686	C	T	619.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=0.107;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr11	56467787	rs74218731	A	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr11	56467810	rs76085479	A	T	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.609;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=0.000;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr11	56467813	rs77180330	A	G	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.234;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=0.492;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr11	56467816	rs78119960	G	T	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=0.411;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr11	56467819	rs78036340	A	G	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.967;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=0.807;SOR=1.363;set=HC	GT:AD:AF:DP	0/1:48,30:0.38:78
chr11	56467833	rs73474897	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr11	56467881	rs73474900	T	C	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:92,64:0.41:156
chr11	56467926	rs1704284	A	G	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:140,118:0.46:258
chr11	56467945	rs36184181	G	T	3051.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:154,136:0.47:290
chr11	56468020	rs532637	T	C	5545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-4.637;QD=18.80;ReadPosRankSum=-0.820;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:135,160:0.54:295
chr11	56468020	.	TG	CA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=1;MGOF=51;MMLQ=28;MQ=57.0;NF=65;NR=58;PP=2944;QD=20;SC=TAATGACTCCTGCCTCCACAC;SbPval=0.59;Source=Platypus;TC=298;TCF=156;TCR=142;TR=123;WE=56468029;WS=56468010;set=Platypus	GT:AD:AF:DP	1/0:175,123:0.41:298
chr11	56468021	rs532635	G	A	3782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-6.109;QD=12.91;ReadPosRankSum=-1.418;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:171,122:0.42:293
chr11	56468044	rs3975155	T	G	8604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-2.972;QD=37.09;ReadPosRankSum=-1.182;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:26,206:0.89:232
chr11	56468047	rs2865519	A	G	8204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.650;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-3.132;QD=37.13;ReadPosRankSum=0.177;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:28,193:0.87:221
chr11	56468048	rs2865520	C	T	9611.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.37;QD=44.29;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	56468111	rs602224	C	T	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:140,66:0.32:206
chr11	56468198	rs4990194	A	G	10061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.711;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-2.231;QD=23.45;ReadPosRankSum=1.446;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:177,252:0.59:429
chr11	56468200	rs4990195	C	T	10421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.086;QD=24.07;ReadPosRankSum=1.927;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:181,252:0.58:433
chr11	56468202	rs4990196	G	A	10467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.078;QD=23.42;ReadPosRankSum=1.904;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:186,261:0.58:447
chr11	56468212	rs591369	G	A	10818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.873;QD=22.68;ReadPosRankSum=0.671;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:196,281:0.59:477
chr11	56468259	rs503776	C	T	6096.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:252,272:0.52:524
chr11	56468368	rs11228733	C	T	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:268,200:0.43:468
chr11	56468403	rs11228734	G	A	5595.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:267,159:0.37:426
chr11	56468416	rs11228735	G	A	5863.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:258,155:0.38:413
chr11	56468440	rs12421330	G	T	5631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.999;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=5.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-0.346;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:232,149:0.39:381
chr11	56468448	rs80194264	AA	GT	5763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.749;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=9.505;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-0.388;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:220,150:0.41:370
chr11	56468452	rs79970235	A	C	5647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.686;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=10.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.324;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:212,149:0.41:361
chr11	56468493	rs10792053	A	G	3824.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:187,181:0.49:368
chr11	56468554	rs12420076	A	C	11988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.54;ReadPosRankSum=-0.211;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:235,297:0.56:532
chr11	56468560	rs10896516	TA	CG	12269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.87;ReadPosRankSum=0.685;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:253,308:0.55:561
chr11	56468637	rs76884192	C	T	14399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.83;ReadPosRankSum=1.566;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:341,385:0.53:726
chr11	56468646	rs78493274	C	T	13784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.78;ReadPosRankSum=3.619;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:341,356:0.51:697
chr11	56468694	rs79060400	C	T	10832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=-0.665;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:296,287:0.49:583
chr11	56468699	rs79251113	T	A	10684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=4.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.05;ReadPosRankSum=-0.490;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:289,272:0.48:561
chr11	56468704	rs79288825	T	C	10219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=4.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=-0.515;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:281,258:0.48:539
chr11	56468720	rs66943455	T	C	5257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=6.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.579;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:266,242:0.48:508
chr11	56468817	rs74605930	G	T	3415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=10.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=0.811;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:133,92:0.41:225
chr11	56468819	rs78460796	CC	TT	3415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=8.814;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=0.776;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:134,91:0.40:225
chr11	56468828	rs530142	G	C	2969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.085;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-0.121;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:117,77:0.40:194
chr11	56468832	rs79579174	G	T	2847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.953;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=-0.873;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:110,75:0.41:185
chr11	56468835	rs588308	G	T	2826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.567;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=-1.652;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:102,73:0.42:175
chr11	56468870	.	GTG	ACA	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=11.301;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-2.126;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:56,30:0.35:86
chr11	56468877	.	G	A	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=-2.598;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr11	56468881	.	C	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-2.107;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chr11	56468883	.	T	C	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.901;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-1.781;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:50,24:0.32:74
chr11	56468893	rs79757227	G	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.043;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr11	56468897	.	G	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.845;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.601;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr11	56468909	rs79696743	TG	CA	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr11	56510672	rs577576	T	C	8539.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	56756664	rs2853083	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.446;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:205,36:0.15:241
chr11	56757021	rs61886711	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.502;QD=0.15;ReadPosRankSum=1.183;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:231,28:0.11:259
chr11	56954846	rs716745	C	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.695;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:502,95:0.16:597
chr11	57004577	rs11544374	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	57077464	rs10896602	T	C	17367.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr11	57081197	rs4939134	G	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.867;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.305;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr11	57094842	.	TA	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.350;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:98,22:0.18:120
chr11	57135663	rs55655702	A	AG	2873.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	57137296	rs2276040	G	A	8037.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	57137538	rs67821929	A	AG	3797.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	57144152	rs1867126	G	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	57147016	rs540687	A	G	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	57147353	rs544079	G	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	57148053	rs571651	G	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	57148175	rs669661	A	G	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	57155001	rs536455	G	A	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	57155288	rs630396	T	C	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	57156438	rs3741089	A	G	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr11	57157399	.	G	T	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.082;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.963;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:159,82:0.34:241
chr11	57157405	rs490358	A	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.535;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:203,35:0.15:238
chr11	57176628	rs2241899	C	T	3823.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:33,158:0.83:191
chr11	57184218	rs4938865	C	T	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	57193653	rs12422015	A	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	57243588	rs2258835	A	G	25551.77	.	AC=2;AF=1.00;AN=2;DB;DP=927;set=Intersection	GT:AD:AF:DP	1/1:0,922:1.00:922
chr11	57258617	rs2729384	T	C	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	57265400	rs2581922	C	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	57268170	rs2250673	T	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	57310307	rs80123614	A	G	3732.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:25,158:0.86:183
chr11	57317640	rs8890	C	T	4216.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:34,172:0.83:206
chr11	57320044	rs2234412	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:5,76:0.94:81
chr11	57334420	.	GC	G	363	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=15;HapScore=3;MGOF=21;MMLQ=23;MQ=59.72;NF=2;NR=16;PP=363;QD=20.5;SC=ATCTCTGCCCGCCCCCCCCCC;SbPval=0.93;Source=Platypus;TC=26;TCF=6;TCR=20;TR=18;WE=57334438;WS=57334410;set=Platypus	GT:AD:AF:DP	1/0:8,18:0.69:26
chr11	57334430	.	C	CGCCG	380	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=11;HapScore=3;MGOF=21;MMLQ=24;MQ=60.48;NF=2;NR=16;PP=380;QD=21.4444444444;SC=GCCCCCCCCCCCCTCCTAGAA;SbPval=0.93;Source=Platypus;TC=26;TCF=6;TCR=20;TR=18;WE=57334438;WS=57334410;set=Platypus	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	57334508	rs4939152	G	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=3.091;QD=1.69;ReadPosRankSum=1.095;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:108,23:0.18:131
chr11	57346723	rs112429940	GCACCCTA	G	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-1.201;SOR=0.234;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr11	57365895	rs28362945	G	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr11	57369730	rs11229063	G	A	767.81	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr11	57374332	rs11603020	T	C	4329.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:34,170:0.83:204
chr11	57379170	rs2511988	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	57381989	rs4926	G	A	3862.82	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:20,165:0.89:185
chr11	57414387	rs7947357	A	G	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:21,118:0.85:139
chr11	57424389	rs55969690	GA	G	452.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.424;QD=16.77;ReadPosRankSum=-0.418;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr11	57461473	rs11287593	GT	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.16;ReadPosRankSum=1.041;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr11	57463267	rs377510830	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.736;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.554;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr11	57463500	rs1783978	T	C	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:18,65:0.78:83
chr11	57467035	rs11604333	C	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr11	57472141	.	GTTTT	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=-0.712;QD=4.53;ReadPosRankSum=0.674;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr11	57507983	rs4827	C	T	1014.28	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:4,42:0.91:46
chr11	57509429	rs635663	A	G	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	57509599	rs201621399	C	T	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=-1.590;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:15,70:0.82:85
chr11	57556673	rs7126553	T	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.865;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:117,18:0.13:135
chr11	57571232	rs11229137	C	T	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	57581613	rs623541	C	A	452.10	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr11	57799183	rs7123727	C	T	8510.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:71,358:0.83:429
chr11	57799371	rs1374570	G	C	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:19,109:0.85:128
chr11	57876436	rs7935428	C	A	4316.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:24,179:0.88:203
chr11	57876682	rs61738000	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.08;ReadPosRankSum=-0.586;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:337,44:0.12:381
chr11	57958775	rs7120468	C	T	7727.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:60,317:0.84:377
chr11	57958972	rs1451317	C	A	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:21,82:0.80:103
chr11	57971195	rs11229279	G	A	9314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.896;QD=31.90;ReadPosRankSum=-0.192;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:64,228:0.78:292
chr11	57971201	rs11229280	G	A	9414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.81;ReadPosRankSum=-0.883;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:62,234:0.79:296
chr11	57982229	rs1966836	A	G	6671.22	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:30,263:0.90:293
chr11	57982584	rs1966835	T	C	6912.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:45,278:0.86:323
chr11	57982620	rs1966834	A	G	6715.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:52,294:0.85:346
chr11	57982726	rs1993089	G	T	4547.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:33,178:0.84:211
chr11	57982763	rs1993088	A	G	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:28,125:0.82:153
chr11	57982832	rs2867400	T	A	5210.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:37,206:0.85:243
chr11	57982896	rs2903566	G	T	9851.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:58,408:0.88:466
chr11	57983194	rs7103033	A	G	6245.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:54,260:0.83:314
chr11	57996312	rs4245219	C	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	58034543	rs10792156	C	T	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	58125620	rs4127353	T	C	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	58126305	rs4939208	A	T	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	58207204	rs4938895	A	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	58295748	rs35632700	TCA	T	1073.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	58318619	rs1047979	C	G	7435.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	58380192	rs35224542	C	CT	961.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;QD=20.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	58478084	rs675815	T	C	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	58491921	rs10896818	A	T	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	58492073	rs58778620	GTT	G	613.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	58602309	rs11229651	C	T	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.89;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	58604712	rs11229653	T	C	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	58605673	rs11229655	T	C	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	58605922	rs10896850	A	G	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	58674948	rs150638642	TTTTG	T	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=0.69;ReadPosRankSum=0.182;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:44,5:0.10:49
chr11	58674952	rs35731745	G	GT	1098.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:5,44:0.90:49
chr11	58715285	rs565355	C	T	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:7,108:0.94:115
chr11	58978940	rs544864	C	T	9496.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	59056153	rs1894123	C	T	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.95;QD=26.56;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	59132798	rs7941190	G	C	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:38,189:0.83:227
chr11	59132882	rs10896964	A	G	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:30,129:0.81:159
chr11	59189405	rs9988824	T	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.640;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	59189912	rs1453547	G	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=3.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.339;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:195,43:0.18:238
chr11	59190499	rs11602535	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.703;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-2.150;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr11	59210550	rs7947825	G	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	59210761	rs11605572	C	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.499;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:379,79:0.17:458
chr11	59211188	rs6591536	G	A	7316.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:56,309:0.85:365
chr11	59211265	rs7941591	T	C	4886.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:38,220:0.85:258
chr11	59211421	rs17591107	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.457;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:165,29:0.15:194
chr11	59224720	rs1453543	A	G	10334.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr11	59224885	rs1453542	G	C	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=4.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.157;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:221,37:0.14:258
chr11	59245072	rs142374527	C	T	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:248,132:0.35:380
chr11	59368218	rs367608218	CA	C	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.422;QD=2.19;ReadPosRankSum=-1.822;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:131,55:0.30:186
chr11	59369401	rs7106463	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	59382903	.	A	G	3373.18	.	AC=1;AF=0.500;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	0/1:18,140:0.89:158
chr11	59417201	.	A	AT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=1.058;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr11	59419124	.	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.251;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr11	59420570	.	G	GT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.520;QD=1.31;ReadPosRankSum=-1.599;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr11	59423525	.	TAAA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.07;ReadPosRankSum=1.133;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr11	59427010	.	G	GT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.491;QD=2.57;ReadPosRankSum=0.676;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr11	59480951	rs499033	T	C	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	59808034	rs492674	G	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=1.447;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:186,30:0.14:216
chr11	59829804	rs506053	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	59830103	rs481950	A	G	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	59830198	rs533855	T	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	59831716	rs1151065	C	A	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	59834318	rs579721	G	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	59837097	rs528823	C	T	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	59837721	rs144234019	T	TTATGAAAA	3792.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	59858036	rs2847663	C	G	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	59860178	rs502581	G	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	59940396	rs595718	A	G	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=2.204;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	59940400	rs2044979	C	T	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.88;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	59940403	rs2044978	A	G	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	59940407	rs592346	A	G	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	59940599	rs7232	T	A	7678.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	59942812	.	A	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.525;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr11	59942815	rs7935829	A	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.63;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	59943109	rs2278867	A	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	59945745	rs12453	T	C	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	59946302	rs598862	C	T	12599.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	59946310	rs5792172	CA	C	4755.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:16,242:0.94:258
chr11	59946466	rs587634	T	A	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	59997335	rs608659	T	C	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	60050125	rs10792260	A	G	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.876;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:127,30:0.19:157
chr11	60057715	rs4939331	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr11	60073597	rs4644658	C	T	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	60073702	rs3018806	A	T	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	60102790	rs1443250	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	60107290	rs17533331	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=0.794;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:244,49:0.17:293
chr11	60157107	rs2233252	T	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=1.207;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:298,44:0.13:342
chr11	60157166	rs2233253	C	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-2.038;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:203,28:0.12:231
chr11	60157281	rs78287249	G	T	712.85	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:3,26:0.90:29
chr11	60161216	rs375647222	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.678;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr11	60163958	rs6591579	G	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	60164204	rs2241920	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.004;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:114,20:0.15:134
chr11	60165352	rs3217518	ATT	A	1831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.294;QD=4.08;ReadPosRankSum=0.083;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:377,72:0.16:449
chr11	60167744	rs2304938	C	T	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:19,114:0.86:133
chr11	60172087	rs10750937	C	T	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.733;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:385,79:0.17:464
chr11	60172273	rs10897057	A	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.304;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.434;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr11	60173554	rs4939353	A	G	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	60182970	rs7131283	A	T	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	60184191	rs3825020	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=7.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.20;ReadPosRankSum=-1.255;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:326,41:0.11:367
chr11	60202747	rs894590	C	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	60202798	rs11377519	C	CA	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.325;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr11	60202892	rs4938945	G	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-1.792;QD=2.12;ReadPosRankSum=-1.111;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr11	60230531	rs2070770	C	T	1441.94	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:8,60:0.88:68
chr11	60231260	rs74746582	G	A	5696.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:38,239:0.86:277
chr11	60235683	rs1941031	G	T	773.90	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr11	60264755	rs2298551	G	A	9322.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr11	60264947	rs2298552	C	T	11156.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr11	60265002	rs2298553	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=1.591;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:232,38:0.14:270
chr11	60265164	rs2298554	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	60268679	rs2186918	G	C	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	60268736	rs2298555	C	A	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	60271325	rs2298556	A	C,T	2586.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=104;set=Intersection	GT:AF:DP	1/2:0.83,0.17:103
chr11	60274393	rs2298558	G	A	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.495;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:184,40:0.18:224
chr11	60274640	rs2298559	T	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-1.655;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:228,32:0.12:260
chr11	60285575	rs10736706	A	G	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	60291413	rs6591595	C	T	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	60296823	rs368274488	GT	G	884.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr11	60309947	rs4939400	A	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	60310083	rs11230378	A	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=4.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=-0.380;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:150,23:0.13:173
chr11	60504424	rs11363998	CT	C	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.744;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:101,54:0.35:155
chr11	60531346	rs1032939	T	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:5,74:0.94:79
chr11	60534901	rs4939450	G	C	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	60559805	rs931861	A	G	8439.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr11	60561613	rs751026	C	T	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:21,87:0.81:108
chr11	60563235	rs4938980	G	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:18,66:0.79:84
chr11	60567230	rs11230483	C	T	4667.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:32,194:0.86:226
chr11	60567275	rs579967	G	A	9246.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	60617646	rs495949	T	C	23867.77	.	AC=2;AF=1.00;AN=2;DB;DP=903;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr11	60620585	rs2467642	A	G	8263.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	60620590	rs2428461	C	G	8441.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	60635091	rs550479	T	C	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	60637164	rs489172	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=1346;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.589;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:1160,182:0.14:1342
chr11	60638461	rs10897122	C	T	15364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.27;ReadPosRankSum=-0.575;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:118,640:0.84:758
chr11	60638470	rs566411	A	G	33738.77	.	AC=2;AF=1.00;AN=2;DB;DP=836;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.45;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,834:1.00:834
chr11	60638562	rs76136580	C	T	10846.77	.	AC=1;AF=0.500;AN=2;DB;DP=1103;set=Intersection	GT:AD:AF:DP	0/1:559,534:0.49:1093
chr11	60689445	rs555835	T	C	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:34,196:0.85:230
chr11	60689534	rs75070807	C	T	3829.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:28,155:0.85:183
chr11	60695301	rs575123	C	A	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:28,95:0.77:123
chr11	60703076	rs11230522	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	60703777	rs55920775	G	A	5325.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:33,213:0.87:246
chr11	60705454	rs2905692	A	G	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	60750048	rs2905506	T	C	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	60750240	rs3019541	G	A	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	60750298	rs72195127	GTCTGCAGGGAC	G	2161.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	60775007	rs4939485	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr11	60776186	rs11230562	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.661;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:279,55:0.16:334
chr11	60776306	rs2074225	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=5.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.001;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:260,50:0.16:310
chr11	60776334	rs2905518	A	G	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	60776465	rs11230564	A	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:54,18:0.25:72
chr11	60776484	rs2074226	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr11	60778513	rs74860834	T	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.236;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:122,35:0.22:157
chr11	60778650	rs10528068	C	CGTGTGTGTGTGTGT	2962.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=35.27;ReadPosRankSum=1.435;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:10,74:0.88:84
chr11	60783108	rs2074229	C	T	13459.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:109,567:0.84:676
chr11	60783126	rs3019556	C	T	34588.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,764:1.00:764
chr11	60783135	rs3019557	A	G	35794.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,829:1.00:829
chr11	60785352	rs1050922	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.792;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:183,30:0.14:213
chr11	60785464	rs2074233	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr11	60890563	rs4245224	C	T	3441.89	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:18,153:0.89:171
chr11	60891310	rs7106643	T	C	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:34,140:0.80:174
chr11	60892606	rs637186	A	G	10427.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:78,449:0.85:527
chr11	60893235	rs2229177	C	T	9725.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:65,420:0.87:485
chr11	60893322	rs574843	G	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.323;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:162,24:0.13:186
chr11	60899767	rs754382	A	G	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:13,81:0.86:94
chr11	60899815	rs2232142	A	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.449;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr11	60906450	rs508970	A	G	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:12,81:0.87:93
chr11	61044021	.	TA	T	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.285;QD=1.66;ReadPosRankSum=-0.899;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:52,23:0.31:75
chr11	61078005	rs80208062	T	C	918.74	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:5,41:0.89:46
chr11	61100308	rs2512810	G	C	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.18;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	61106525	rs2512809	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	61106892	rs2513329	G	C	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	61108974	rs2260655	G	A	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	61110169	rs4939514	A	C	15427.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,556:1.00:556
chr11	61111831	rs145461522	CTT	C	1813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.711;QD=17.27;ReadPosRankSum=-0.397;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:19,86:0.82:105
chr11	61112802	rs2305465	C	T	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	61114009	rs139930374	CTCACTGCTGTGCTGAGGTG	C	1626.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:6,40:0.87:46
chr11	61123965	rs76030461	A	G	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	61165280	rs3741265	G	A	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	61165731	rs11382548	C	CA	9067.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	61165741	rs10897158	G	C	9247.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	61179285	rs3019198	G	A	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	61183428	.	T	C	273.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr11	61197460	rs34378918	GC	G	2541.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	61204361	rs896831	A	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	61205434	rs879647	G	A	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	61205676	rs5792226	C	CT	1095.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.030;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.492;QD=14.23;ReadPosRankSum=0.508;SOR=1.582;set=HC	GT:AD:AF:DP	0/1:13,64:0.83:77
chr11	61249383	rs3019200	C	A	8946.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	61253200	rs3019187	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	61253973	rs2957858	A	G	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	61254376	rs3019188	G	C	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	61404161	rs67140840	G	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.763;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:170,28:0.14:198
chr11	61490880	rs9735635	C	A	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.167;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:318,65:0.17:383
chr11	61491097	rs566009	A	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	61505168	rs198444	G	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.710;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:427,64:0.13:491
chr11	61505583	rs2240287	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.799;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:227,39:0.15:266
chr11	61505696	rs198443	G	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.787;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:517,86:0.14:603
chr11	61523300	rs10709102	GA	G	2487.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	61524507	rs2238001	T	C	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=4.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.186;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:119,22:0.16:141
chr11	61524974	rs198460	G	A	10026.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	61525020	rs198459	G	A	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:43,200:0.82:243
chr11	61533797	rs4963418	A	T	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:19,70:0.79:89
chr11	61534872	rs547589	A	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.316;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:397,67:0.14:464
chr11	61539020	rs149803	C	G	12404.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:114,547:0.83:661
chr11	61548559	rs509360	A	G	6160.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:45,238:0.84:283
chr11	61548874	rs174532	G	A	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:22,144:0.87:166
chr11	61624414	rs174602	T	C	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:17,120:0.88:137
chr11	61624885	rs526126	G	C	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	61631331	rs639394	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.037;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:104,15:0.13:119
chr11	61633182	rs482548	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-0.441;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:122,17:0.12:139
chr11	61641211	rs6591665	A	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	61647427	rs174635	T	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	61658629	rs693672	T	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	61658800	rs174465	C	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	61670037	rs174471	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:17,66:0.80:83
chr11	61672147	rs111902278	A	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=1.244;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:231,36:0.13:267
chr11	61674118	rs174476	C	T	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:33,140:0.81:173
chr11	61674298	rs148623923	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr11	61675714	rs34281659	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-2.110;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr11	61719387	rs1800007	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-3.545;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:125,21:0.14:146
chr11	61724292	rs760306	C	T	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.379;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:505,90:0.15:595
chr11	61724514	rs195162	C	T	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	61725599	rs113492158	A	ATCCTCCTCC	5758.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	61726871	rs195158	G	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	61730036	rs149698	G	A	5562.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:34,231:0.87:265
chr11	61730234	rs1800009	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.081;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-1.178;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:324,69:0.18:393
chr11	61731534	rs195155	G	T	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	61735553	rs11271453	T	TGCTGCAGATTGGGAA	3308.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	61735568	.	A	AGCTGCAGATTGGGAC	2897	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=24;MQ=60.09;NF=18;NR=10;PP=2897;QD=20;SC=CAGATTGGGAAGCTGCAGATG;SbPval=0.62;Source=Platypus;TC=77;TCF=48;TCR=29;TR=28;WE=61735576;WS=61735558;set=Platypus	GT:AD:AF:DP	0/1:49,28:0.36:77
chr11	61895541	rs1675130	A	G	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr11	61895741	rs1675131	A	G	6179.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	61896215	rs1792946	G	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	61897197	rs1792944	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	61897359	rs1675133	C	T	12698.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr11	61906299	rs1614060	A	G	11914.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr11	61906374	rs1675126	T	C	12286.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr11	61907909	rs1675124	A	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	61908440	rs2277283	T	C	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.777;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:428,95:0.18:523
chr11	61908672	rs1675123	G	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	61913196	rs7129085	G	T	1311.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.75;ReadPosRankSum=1.392;SOR=0.374;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr11	61914056	rs11230931	G	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	61960763	rs11441356	T	TC	3134.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:18,97:0.84:115
chr11	61960809	rs7951859	C	A	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:30,148:0.83:178
chr11	61960827	rs2232941	T	C	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:35,168:0.83:203
chr11	62010667	rs2232949	T	C	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr11	62010863	rs2232950	C	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=2.502;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:227,40:0.15:267
chr11	62040694	rs59964144	T	TAC,TACAC	1782.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=55;set=Intersection	GT:AF:DP	1/2:0.15,0.83:46
chr11	62105391	rs2513749	C	T	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	62105441	rs3741245	T	C	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,53:0.82:65
chr11	62123989	rs67821209	T	A	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:14,69:0.83:83
chr11	62124696	rs143687152	C	CTTTTG	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	62158886	rs2958531	G	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	62159187	rs3832779	G	GA	697.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr11	62292882	rs566144	G	T	16064.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:1,577:1.00:578
chr11	62293948	rs486903	G	A	12408.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr11	62295398	rs141102768	T	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.922;ClippingRankSum=0.000;DB;DP=855;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=1.000;QD=0.48;ReadPosRankSum=0.427;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:735,116:0.14:851
chr11	62348534	rs79021925	T	G	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:15,82:0.85:97
chr11	62365665	rs2849031	G	A	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	62370527	rs11231159	C	T	16919.77	.	AC=1;AF=0.500;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	0/1:117,733:0.86:850
chr11	62371773	rs2516633	A	C	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	62375828	rs78222742	G	A	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:16,108:0.87:124
chr11	62380732	rs4387351	T	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	62381106	rs1799959	G	C	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	62383715	rs12794886	G	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.329;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:14,48:0.77:62
chr11	62384188	.	G	A	4420.77	.	AC=1;AF=0.500;AN=2;DP=229;set=Intersection	GT:AD:AF:DP	0/1:36,192:0.84:228
chr11	62384869	rs4963224	T	C	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	62394881	rs7949030	A	G	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:20,88:0.81:108
chr11	62397177	rs948683	C	G	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	62400016	rs10897289	T	C	2640.78	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:11,108:0.91:119
chr11	62401716	rs2957121	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	62430659	rs597259	T	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.27;ReadPosRankSum=-1.285;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:124,19:0.13:143
chr11	62432815	rs4489748	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr11	62434173	rs11231181	G	A	7132.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:44,289:0.87:333
chr11	62438750	rs17637597	T	C	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:17,104:0.86:121
chr11	62438819	rs693698	G	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.181;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:83,17:0.17:100
chr11	62438846	rs3809079	G	A	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:15,77:0.84:92
chr11	62439569	rs13941	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.106;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr11	62458275	rs6856	T	C	8814.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	62469929	rs72929434	C	A	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	62487378	rs12291015	T	C	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	62490219	rs576251	G	A	16398.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr11	62496519	rs584845	T	C	7402.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	62500444	rs143308039	CT	C	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.957;QD=8.99;ReadPosRankSum=0.918;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:11,37:0.77:48
chr11	62505764	rs6675	C	T	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.88;SOR=1.431;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	62521408	rs72929469	A	T	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	62521475	rs72929471	T	C	15396.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr11	62521663	rs3829248	C	T	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	62555059	rs3087924	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	62556703	rs12418135	G	T	8154.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:61,338:0.85:399
chr11	62563353	rs539465	G	A	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	62564009	rs4693	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	62638330	rs11231260	T	A	794.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.79;ReadPosRankSum=0.000;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr11	62638333	rs55725256	T	A	803.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.15;ReadPosRankSum=-0.042;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr11	62638336	rs199540960	T	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.926;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr11	62652063	rs489381	A	G	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	62677352	rs2067479	G	A	6146.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:33,261:0.89:294
chr11	62744899	rs3017670	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	62747145	rs3017671	A	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	62847352	rs11231338	G	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-1.138;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:261,48:0.16:309
chr11	62847453	rs7945121	T	C	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:16,155:0.91:171
chr11	62847562	rs7926818	G	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr11	62848367	rs10897341	A	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	62848445	rs11231340	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr11	62848487	rs11231341	A	C	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr11	62848568	rs11231342	C	G	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.04;ReadPosRankSum=0.839;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr11	62848995	rs6591733	G	C	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	62850684	rs4963356	C	T	593.81	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr11	62863518	rs7113279	A	G	6060.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:62,281:0.82:343
chr11	62871460	rs12283166	C	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:9,45:0.83:54
chr11	62886319	rs948060	G	C	2006.96	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:10,81:0.89:91
chr11	62886609	rs10897367	A	T	2712.18	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:14,110:0.89:124
chr11	62902172	rs1939782	A	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	62910849	rs1939749	T	C	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:26,133:0.84:159
chr11	62911079	rs1939748	G	C	6002.79	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:27,239:0.90:266
chr11	62933774	rs2226866	C	G	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:16,66:0.80:82
chr11	62951064	rs1525072	C	A	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	62951221	rs11231397	C	G	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=1.193;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:350,80:0.19:430
chr11	62951262	rs118140791	G	A	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-1.694;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:281,70:0.20:351
chr11	62984868	rs11231409	T	C	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-1.116;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:238,52:0.18:290
chr11	62985544	rs12417255	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-1.089;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:47,9:0.16:56
chr11	62995875	rs7106186	G	A	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	63057925	rs1790218	G	A	7348.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:59,312:0.84:371
chr11	63064823	rs576641	T	C	7143.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:61,298:0.83:359
chr11	63064970	rs575009	T	G	5829.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:50,234:0.82:284
chr11	63066903	rs515213	T	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:11,60:0.85:71
chr11	63067138	rs513338	T	G	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:24,146:0.86:170
chr11	63067181	.	A	AGTGT	826.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=29.53;ReadPosRankSum=0.083;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr11	63069715	rs557658	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	63072310	rs1201559	C	T	5892.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:41,249:0.86:290
chr11	63129782	rs517655	A	G	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:15,82:0.85:97
chr11	63129876	rs516763	T	G	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr11	63138482	rs566456	G	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:13,67:0.84:80
chr11	63149670	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=3.573;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.244;QD=0.49;ReadPosRankSum=-0.244;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:193,39:0.17:232
chr11	63258416	rs10897424	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.58;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	63274120	rs12272556	G	C	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr11	63278621	rs2239679	C	G	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:24,127:0.84:151
chr11	63313644	rs584905	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.76;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	63357919	rs593759	C	T	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	63413962	rs147319344	AAAAT	A	1745.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=43.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	63487386	rs542998	T	C	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	63488564	rs115424302	G	C	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:8,53:0.87:61
chr11	63585804	rs643634	C	A	9925.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:62,401:0.87:463
chr11	63657494	rs4980528	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	63663130	.	CTTTTTTTTTTTT	C	1392.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=21.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.28;ReadPosRankSum=2.733;SOR=3.319;set=HC	GT:AD:AF:DP	1/1:3,43:0.93:46
chr11	63666721	.	C	CT	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=5.196;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.054;QD=12.17;ReadPosRankSum=0.231;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr11	63668557	rs224174	C	T	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	63670387	rs1486936	C	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,61:0.80:76
chr11	63673603	.	CTG	C,CTGTG	1422.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=115;set=Intersection	GT:AF:DP	1/2:0.79,0.13:63
chr11	63676313	rs56263226	G	GC	1418.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:10,55:0.85:65
chr11	63679369	rs320108	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.74;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	63680045	rs320109	C	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-2.530;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:448,65:0.13:513
chr11	63680297	rs320110	A	G	16928.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr11	63681513	rs10897461	T	C	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	63681648	rs4980533	G	A	2830.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:17,111:0.87:128
chr11	63682312	rs4375445	G	C	24856.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=45.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,552:1.00:552
chr11	63682312	.	GAGCCTG	CAGGCTG,CAGGCTC	2934	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=27;MQ=60.0;NF=253,251;NR=238,235;PP=620,2934;QD=1.37162499972;SC=AGGGGCAGCTGAGCCTGAGCT;SbPval=0.52;Source=Platypus;TC=508;TCF=261;TCR=247;TR=491,486;WE=63682327;WS=63682302;set=Platypus	GT:AF:DP	0/1:0.97:508
chr11	63682315	rs34212439	C	G	24877.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr11	63682317	rs113350066	TG	T	1222.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.840;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:465,77:0.14:542
chr11	63682318	rs11231638	G	C	16914.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.21;ReadPosRankSum=-0.897;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:77,465:0.86:542
chr11	63682319	rs57942405	A	C	1490.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.823;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:468,79:0.14:547
chr11	63682869	rs3802941	A	G	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:24,100:0.81:124
chr11	63706441	rs28683669	G	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.86;MQRankSum=2.308;QD=16.14;ReadPosRankSum=1.655;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	63713239	rs3740636	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr11	63720086	rs4980513	T	G	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	63767186	rs709594	A	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.917;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:107,21:0.16:128
chr11	63767249	rs11600062	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.778;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:59,10:0.14:69
chr11	63769144	rs539432	C	G	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.153;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:233,51:0.18:284
chr11	63883985	rs614397	T	C	20143.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,755:1.00:755
chr11	63884027	rs614035	C	T	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.919;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:566,101:0.15:667
chr11	63885287	rs947939	C	T	12436.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:101,532:0.84:633
chr11	63885632	rs4379854	A	G	14848.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr11	63885704	rs677447	C	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=0.849;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:469,69:0.13:538
chr11	63918589	rs2282492	T	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr11	63964657	rs2236648	C	T	531.74	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr11	63965534	rs35235491	C	CT	485.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-0.314;SOR=2.129;set=HC	GT:AD:AF:DP	1/1:5,28:0.85:33
chr11	63967770	rs11231722	C	G	4794.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:27,196:0.88:223
chr11	63971256	rs148030896	C	CTTTG	1371.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr11	63978067	rs78038516	C	G	4183.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:30,169:0.85:199
chr11	63986713	rs11603538	C	A	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:49,180:0.79:229
chr11	63987339	rs11231726	C	T	5126.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:55,229:0.81:284
chr11	63990996	rs5792315	AC	A	2438.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:20,78:0.80:98
chr11	63994692	rs1860368	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.19;ReadPosRankSum=-0.953;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:422,56:0.12:478
chr11	63994696	rs2429456	T	C	14425.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr11	63997329	rs633561	A	G	6887.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.92;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	63997338	rs633557	T	C	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	63997566	rs10708923	GA	G	570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=2.091;QD=6.49;ReadPosRankSum=0.378;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:34,54:0.61:88
chr11	63997882	rs11311686	AT	A	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.545;QD=2.25;ReadPosRankSum=1.054;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:94,39:0.29:133
chr11	63999240	rs3741404	G	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr11	64002238	rs7482791	T	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	64003843	rs11603042	G	T	5783.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:30,226:0.88:256
chr11	64004555	.	CAAAGAG	C	807.74	.	AC=1;AF=0.500;ALERT;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr11	64004557	rs112715386	AAGAGAGAG	A	34.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.83;MQRankSum=-0.949;QD=1.05;ReadPosRankSum=0.384;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:29,4:0.12:33
chr11	64011441	rs654573	T	C	7121.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	64012225	rs605187	G	C	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	64012910	rs60031276	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	64022459	rs632439	A	G	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	64024056	rs588177	C	A	10593.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr11	64026144	rs2244625	G	A	26486.77	.	AC=2;AF=1.00;AN=2;DB;DP=1010;set=Intersection	GT:AD:AF:DP	1/1:0,1007:1.00:1007
chr11	64026639	rs12146487	G	A	4936.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:35,213:0.86:248
chr11	64030944	rs2510067	T	C	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	64039175	rs2286615	G	A	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:15,107:0.88:122
chr11	64052306	rs652611	T	G	9623.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	64066859	rs2232417	G	A	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	64082437	rs650008	C	T	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	64085074	rs550819	T	A	10812.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:1,390:1.00:391
chr11	64085785	rs7938623	A	G	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	64085938	rs7941847	T	C	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	64088435	rs566049	A	G	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	64088927	rs78184413	G	C	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:18,80:0.82:98
chr11	64107735	rs663743	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-1.790;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:71,13:0.15:84
chr11	64109118	rs647152	T	G	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	64109315	.	GGTTGTGGTCTGAGGTCTTGGGCCATCAGTGATGTCACAACCAGATGGCCCAAGACCCCAGACCACAACCCCATGTCTGGT	G	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.225;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=11.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-1.075;SOR=2.125;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr11	64110348	rs11602301	T	G	212.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.28;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	64110626	rs77179073	C	T	1238.94	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:5,45:0.90:50
chr11	64110668	rs574835	G	A	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	64110683	rs479552	G	C	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	64111928	rs685870	T	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,129:0.98:131
chr11	64116843	rs1318165	A	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	64118422	rs614047	G	C	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	64120435	rs489419	T	C	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	64120451	rs61886887	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.130;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:72,14:0.16:86
chr11	64124515	rs612448	T	C	8654.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	64124622	rs61886888	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-2.477;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:248,47:0.16:295
chr11	64124823	rs519763	C	T	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	64124940	rs600377	T	G	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	64124980	rs542907	G	A	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	64127744	rs521950	A	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	64127881	rs564687	T	G	8573.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	64128423	rs516124	G	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	64135435	rs508168	G	A	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	64135541	rs3217512	GTC	G	24529.73	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr11	64136877	rs11606015	C	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	64137875	rs11606081	T	C	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	64138805	rs11542299	T	C	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	64138905	rs17857342	T	G	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	64217467	rs76247963	C	G	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:21,91:0.81:112
chr11	64326795	rs2277312	A	G	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr11	64332862	rs71456318	A	C	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:14,72:0.84:86
chr11	64359286	rs3825016	C	T	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	64360274	rs11231825	T	C	14135.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:1,546:1.00:547
chr11	64361384	rs2021860	G	T	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	64365943	rs1529909	T	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr11	64367050	rs1705361	A	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	64367325	rs1630320	A	G	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr11	64387932	rs2277311	G	A	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	64418900	rs526338	G	A	11283.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr11	64421249	.	GT	G	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.733;QD=1.29;ReadPosRankSum=-1.310;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr11	64465282	rs17189800	C	T	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	64480308	rs2666560	C	T	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	64480641	rs2518907	G	A	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	64496587	rs559977	T	C	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	64497161	rs534221	C	T	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=26.01;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	64497185	.	CAAAA	C	11321.73	.	AC=2;AF=1.00;AN=2;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=43.05;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	64503179	rs553618	A	G	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	64503496	rs556356	A	G	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	64503543	rs33956572	CT	C	3269.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	64507315	rs550930	T	C	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	64507680	rs547280	A	C	17126.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr11	64507799	rs546323	G	C	9530.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	64510898	rs2904961	C	T	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	64511050	rs2073797	G	C	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	64514655	.	C	T	1650.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:17,61:0.78:78
chr11	64520942	rs2959652	G	T	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=3.202;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	64522066	rs625172	A	G	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	64525216	rs589691	C	T	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	64525464	rs490980	C	T	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	64525644	rs489192	G	T	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	64535357	rs575375	T	C	7978.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	64535849	rs561158	C	T	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	64536866	rs484886	T	C	8585.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	64563934	rs483544	A	G	12619.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr11	64567047	rs3832792	GCA	G	17464.73	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:2,647:1.00:649
chr11	64572018	rs2959656	T	C	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	64572557	rs540012	A	G	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	64572602	rs2071313	G	A	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	64591972	rs10792447	T	C	4251.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:26,181:0.87:207
chr11	64594490	rs646709	A	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	64596916	rs10897529	C	T	2510.78	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:11,92:0.89:103
chr11	64597205	rs7936466	G	T	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.764;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:222,50:0.18:272
chr11	64597506	rs3741395	T	C	9877.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:73,418:0.85:491
chr11	64597574	rs12790925	G	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.345;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:480,90:0.16:570
chr11	64598944	rs684071	A	G	8610.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	64602757	rs561895	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.19;ReadPosRankSum=-0.025;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:346,50:0.13:396
chr11	64602782	rs11605623	C	T	9852.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:72,416:0.85:488
chr11	64603844	rs138577794	A	ACTCACCCAC	8599.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:42,203:0.83:245
chr11	64604178	.	T	C	475	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=16;HapScore=4;MMLQ=24;NF=13;NR=5;SC=GACTCAGCCCTGGGGGGGGGG;Source=Platypus;TCF=17;TR=18;WE=64604189;WS=64604168;set=Platypus	GT:AD:AF:DP	1/1:14,18:0.56:32
chr11	64605689	rs541525	A	G	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	64606765	rs676977	T	C	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	64606910	rs142726755	C	CCTGCTCCCA	4035.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:24,91:0.79:115
chr11	64621856	rs3897618	A	G	9142.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	64622869	rs10897533	G	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	64641773	rs35867760	C	CA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.952;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.546;QD=5.29;ReadPosRankSum=0.041;SOR=2.925;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr11	64645871	rs1211284	A	G	9947.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	64664774	rs658006	C	T	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:16,76:0.83:92
chr11	64669417	rs682673	T	C	5947.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	64677293	rs656195	G	C	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	64678920	rs638583	T	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	64680407	rs594820	G	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	64680819	rs618006	G	A	768.56	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:4,32:0.89:36
chr11	64695185	.	GA	G	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.208;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.986;QD=0.51;ReadPosRankSum=-0.901;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:103,29:0.22:132
chr11	64700767	rs675090	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr11	64702200	rs673995	C	T	8913.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:56,386:0.87:442
chr11	64702765	rs2307669	C	CTCTG	1311.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr11	64707978	rs586616	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,75:0.84:89
chr11	64713485	rs596321	T	G	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=0.968;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr11	64715330	rs35160886	CT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.206;QD=2.51;ReadPosRankSum=0.114;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr11	64717801	rs71049671	C	CAA	730.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=8.12;ReadPosRankSum=0.319;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:38,52:0.58:90
chr11	64718050	rs138174447	TTTTC	T	1903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.823;QD=32.27;ReadPosRankSum=-3.548;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,49:0.83:59
chr11	64721908	rs495330	G	A	1415.78	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:7,53:0.88:60
chr11	64726701	rs602404	A	C	1917.79	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:10,78:0.89:88
chr11	64757504	rs574381	G	C	15325.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:114,632:0.85:746
chr11	64761779	rs626670	T	C	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr11	64789194	rs664226	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.417;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.846;SOR=1.892;set=HC	GT:AD:AF:DP	0/1:71,9:0.11:80
chr11	64794918	rs3832791	T	TG	2281.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	64799789	rs532373	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.880;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr11	64799823	rs689361	G	A	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:25,120:0.83:145
chr11	64799841	rs533164	A	G	4241.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:29,162:0.85:191
chr11	64799891	rs533301	T	C	6279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.75;ReadPosRankSum=0.287;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:45,273:0.86:318
chr11	64799894	rs678614	A	C	13517.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	64799998	rs534236	T	C	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.536;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:335,70:0.17:405
chr11	64803206	rs561524	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:9,53:0.85:62
chr11	64806270	rs542175	C	T	3597.28	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:20,159:0.89:179
chr11	64807005	rs34589041	T	A	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:14,77:0.85:91
chr11	64807136	rs2670910	G	A	4973.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:54,220:0.80:274
chr11	64807235	rs495820	C	T	3340.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:31,146:0.82:177
chr11	64807278	rs495935	A	C	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:15,113:0.88:128
chr11	64807294	rs653111	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-1.583;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:93,13:0.12:106
chr11	64808647	rs10160811	A	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.899;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr11	64808681	rs34998502	AC	A	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-0.918;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:70,22:0.24:92
chr11	64809090	rs12271134	T	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	64809167	rs10792456	A	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	64810771	rs11231929	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=1.493;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr11	64812857	rs35124799	G	A	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:22,138:0.86:160
chr11	64820654	rs477539	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-1.535;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr11	64834432	rs573957	T	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	64835463	rs149675910	ACT	A	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=6.617;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.934;QD=3.33;ReadPosRankSum=-0.307;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:130,42:0.24:172
chr11	64851305	rs947799	C	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.211;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:302,53:0.15:355
chr11	64851453	rs35819335	CT	C	1293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-1.079;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:426,76:0.15:502
chr11	64855986	rs2282498	A	G	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.235;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:376,74:0.16:450
chr11	64856108	rs2282499	A	C	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.284;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:502,74:0.13:576
chr11	64856500	rs525781	A	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	64876740	rs72932837	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.710;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr11	64878661	rs625004	T	C	15021.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr11	64880090	rs4930284	G	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	64882789	rs1129195	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.477;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr11	64884052	rs1546532	G	A	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-0.807;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:229,49:0.18:278
chr11	64896237	rs3802936	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-1.384;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr11	64898226	rs9971407	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.341;QD=1.49;ReadPosRankSum=0.674;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:133,25:0.16:158
chr11	64898357	rs11369296	G	GC	14718.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr11	64977644	rs625750	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.598;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:89,16:0.15:105
chr11	64977937	rs542380	A	G	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.404;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-1.611;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:363,57:0.14:420
chr11	64981472	rs239258	G	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.202;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:412,81:0.16:493
chr11	64981853	rs239259	G	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-1.090;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:72,24:0.25:96
chr11	64990041	rs514076	G	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.780;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:105,21:0.17:126
chr11	65000478	rs2904978	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.004;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.553;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr11	65000719	rs2904979	C	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=3.234;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:321,68:0.17:389
chr11	65003812	rs625427	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.212;SOR=0.107;set=HC	GT:AD:AF:DP	0/1:60,9:0.13:69
chr11	65004301	rs2904982	G	T	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-1.667;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:408,85:0.17:493
chr11	65046984	rs35778465	C	CT	3490.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:23,154:0.87:177
chr11	65049278	rs611910	A	G	6156.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:42,251:0.86:293
chr11	65050182	rs667341	T	C	1444.80	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:4,48:0.92:52
chr11	65063553	rs626555	A	T	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:11,53:0.83:64
chr11	65064419	.	C	CA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.433;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr11	65064690	rs487989	G	A	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:11,123:0.92:134
chr11	65118971	rs620888	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	65118997	rs689288	C	T	1239.96	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:5,48:0.91:53
chr11	65123246	rs612392	T	G	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:19,87:0.82:106
chr11	65144075	rs624307	T	C	16167.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr11	65144653	rs116905465	C	T	680.18	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr11	65147862	rs573864	C	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	65157094	rs739389	C	T	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr11	65161328	rs4930154	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	65164114	rs7940559	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr11	65164357	rs12417665	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.520;QD=0.41;ReadPosRankSum=1.050;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:208,27:0.11:235
chr11	65168281	rs2073801	C	T	5800.88	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:33,249:0.88:282
chr11	65178620	rs2957274	G	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	65211734	.	CTGTGTGTGTGTGTG	C	1566.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;QD=43.52;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	65211940	rs550894	C	A	5336.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:48,233:0.83:281
chr11	65211979	rs12803915	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-1.805;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:194,42:0.18:236
chr11	65222952	rs1784858	T	C	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	65270090	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=0.28;ReadPosRankSum=-0.560;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:130,25:0.16:155
chr11	65270498	rs148133626	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=1.251;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:83,18:0.18:101
chr11	65271779	rs36002528	CT	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.080;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:117,38:0.25:155
chr11	65271832	rs3200401	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=1.255;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:219,30:0.12:249
chr11	65273568	rs11367099	TA	T	1569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.833;QD=12.26;ReadPosRankSum=0.102;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:32,96:0.75:128
chr11	65302893	rs947791	G	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.401;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:112,27:0.19:139
chr11	65307402	rs11227217	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.724;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:72,12:0.14:84
chr11	65314814	rs66973976	CG	C	824.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr11	65314818	rs199773504	GGA	G	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=0.590;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr11	65314830	rs58621819	A	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=1.013;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr11	65320780	rs4244811	G	A	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:21,111:0.84:132
chr11	65325325	.	C	CCAGCAG	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.189;QD=0.56;ReadPosRankSum=-0.280;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:124,12:0.09:136
chr11	65337251	rs1346	A	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=0.641;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:200,26:0.12:226
chr11	65338034	rs1151496	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=1.605;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:225,33:0.13:258
chr11	65347297	rs5792362	C	CA	328.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.630;QD=10.96;ReadPosRankSum=-0.443;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr11	65347636	rs1194100	G	C	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	65349849	rs1194099	A	T	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	65352062	rs2298615	C	T	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	65359625	rs4261292	C	G	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	65363275	rs3814752	G	A	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.21;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	65366192	rs7946115	G	C	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	65366240	rs7932616	T	C	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	65366847	rs10791820	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	65367253	rs4326800	C	T	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	65373621	rs1151527	A	G	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	65383755	rs58950470	G	T	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr11	65383896	rs7947140	G	C	13238.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:1,491:1.00:492
chr11	65385606	rs1151489	A	G	4892.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	65386206	rs1193851	C	G	11140.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr11	65389631	rs1144789	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	65392695	rs1205259	C	T	12546.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	65393566	rs11227242	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.084;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:306,52:0.15:358
chr11	65394322	rs10896024	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.384;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr11	65397810	rs191541659	C	T	1592.88	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:7,67:0.91:74
chr11	65415028	rs4930157	T	G	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	65423082	rs1144792	G	A	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	65480791	rs551115	A	G	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	65481166	rs1151500	T	C	9301.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	65481465	rs487264	T	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	65482406	rs4645923	C	T	3627.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:28,151:0.84:179
chr11	65484569	rs563427	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	65546857	rs610037	A	C	4927.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:44,190:0.81:234
chr11	65547333	rs12146493	G	A	11400.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:92,490:0.84:582
chr11	65554680	rs10896044	C	G	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	65601560	rs17854357	G	C	8039.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:71,331:0.82:402
chr11	65617113	rs11327250	AG	A	7004.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	65623347	rs652021	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.844;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:102,17:0.14:119
chr11	65623519	rs4621	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.098;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:387,63:0.14:450
chr11	65623739	rs11227332	A	G	11058.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:49,470:0.91:519
chr11	65624934	rs7125986	A	C	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.686;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:218,49:0.18:267
chr11	65628334	rs13817	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.250;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:141,23:0.14:164
chr11	65629932	rs659857	T	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.823;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:124,21:0.14:145
chr11	65629934	rs545500	G	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.612;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:129,19:0.13:148
chr11	65630098	rs3216088	T	TG	1607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.786;QD=14.89;ReadPosRankSum=-0.264;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:40,68:0.63:108
chr11	65630101	rs633877	G	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.034;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.568;QD=2.91;ReadPosRankSum=0.406;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:87,30:0.26:117
chr11	65630698	rs538394	T	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:34,8:0.19:42
chr11	65631167	rs648732	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-1.057;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:329,43:0.12:372
chr11	65631973	rs630303	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.907;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:172,29:0.14:201
chr11	65636053	rs601314	T	C	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	65637984	rs630394	C	G	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:18,128:0.88:146
chr11	65649774	rs604630	A	G	6329.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	65649984	rs687672	T	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.284;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:294,60:0.17:354
chr11	65651830	rs658938	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.360;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr11	65653242	rs568617	C	T	1656.78	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:6,65:0.92:71
chr11	65655259	rs2308217	G	GCC	1246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=10.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-1.337;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:194,45:0.19:239
chr11	65655393	rs641018	G	C	5324.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:54,218:0.80:272
chr11	65661656	rs507062	T	C	4452.96	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:25,197:0.89:222
chr11	65664346	rs637571	T	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	65667796	rs1058068	G	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	65667828	rs11550914	C	T	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=-1.403;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:8,42:0.84:50
chr11	65684929	rs9667389	C	T	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	65685225	rs7947504	T	C	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	65713207	rs9795469	T	C	8072.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	65715747	.	T	TCATC	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=2.010;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr11	65727301	rs491973	A	G	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,56:0.85:66
chr11	65732651	rs550435	G	A	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:23,109:0.83:132
chr11	65732800	rs552130	T	C	3616.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.536;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.15;ReadPosRankSum=0.633;SOR=0.482;set=HC	GT:AD:AF:DP	1/1:20,151:0.88:171
chr11	65733289	rs556643	G	A	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:35,186:0.84:221
chr11	65733393	rs688862	C	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=1.618;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:250,51:0.17:301
chr11	65734539	rs1151505	C	T	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr11	65735174	rs660118	G	C	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:19,64:0.77:83
chr11	65744247	rs622779	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.300;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:84,17:0.17:101
chr11	65744275	rs543952	T	C	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:15,66:0.81:81
chr11	65744421	rs542332	C	T	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:16,105:0.87:121
chr11	65746653	rs679581	A	G	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:15,58:0.79:73
chr11	65767153	rs507672	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:8,50:0.86:58
chr11	65767215	rs506873	G	T	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr11	65771050	rs147010511	TCACTGAG	T	793.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr11	65779590	rs1131544	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=5.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.261;SOR=1.474;set=HC	GT:AD:AF:DP	0/1:95,20:0.17:115
chr11	65780702	rs9667817	A	G	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	65788072	rs3814747	C	T	6620.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	65790527	rs2845570	G	T	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	65792566	rs683191	G	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:13,55:0.81:68
chr11	65810209	rs61895584	C	T	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	65810749	rs7937692	T	C	8549.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	65811208	rs4930170	G	T	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	65824994	rs2302883	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr11	65825455	rs376356384	AAAG	A	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.05;MQRankSum=0.808;QD=7.27;ReadPosRankSum=0.908;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr11	65829637	rs11227395	A	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr11	65868310	rs475817	T	A	12178.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:1,451:1.00:452
chr11	65983522	rs548858	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	65985000	rs557082	A	C	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	65997898	rs561948	A	G	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	66010633	rs524268	T	C	6616.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	66029130	rs572827	G	C	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	66031450	rs525698	T	C	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	66031660	rs1151539	C	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.424;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:284,51:0.15:335
chr11	66036293	rs150627444	A	AC,ACC	4380.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=220;set=Intersection	GT:AF:DP	1/2:0.28,0.63:169
chr11	66040049	rs555853	G	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-0.554;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr11	66040053	rs555826	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	66043253	rs55931871	T	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr11	66050712	rs4073582	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.755;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:214,35:0.14:249
chr11	66050948	rs3016315	C	T	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	66054823	rs510398	C	T	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	66059642	rs150934757	G	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	66059782	rs6591210	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	66083129	rs3741367	T	C	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:22,111:0.83:133
chr11	66083782	rs3741368	G	A	10070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=-0.274;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:66,446:0.87:512
chr11	66099987	rs1784029	C	T	16697.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr11	66100152	rs1784030	T	C	5314.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	66101974	rs3016317	C	T	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	66103046	rs3016763	C	T	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	66104057	rs3016316	T	A	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	66105194	rs1052566	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.062;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr11	66107527	rs1785633	C	A	9294.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr11	66107674	rs1784035	A	G	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	66108660	rs947978	C	T	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	66109033	rs11537993	T	C	9056.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:64,372:0.85:436
chr11	66109219	.	G	A	403.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:51,21:0.29:72
chr11	66109527	rs112182142	C	CTGTG,CTGTGTG	5809.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=152;set=Intersection	GT:AF:DP	1/2:0.22,0.77:135
chr11	66109779	rs1784037	AT	GA	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	66130736	rs1039593	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	66131149	rs1039594	C	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	66131906	rs7125100	A	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	66133311	rs4930358	T	C	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	66133336	rs2279861	A	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	66135179	rs2279862	C	T	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	66135898	rs2292123	T	C	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	66138894	rs7946434	G	C	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	66206169	rs11110	C	T	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:8,59:0.88:67
chr11	66258916	rs75546553	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.648;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:122,23:0.16:145
chr11	66262806	rs10791878	T	C	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	66272142	rs1671063	A	G	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	66278059	rs1791688	C	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	66285268	rs10736656	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	66299515	rs8432	A	G	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	66318972	rs490998	G	A	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	66321927	rs56394515	C	CA	682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.806;QD=8.53;ReadPosRankSum=0.102;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:27,53:0.66:80
chr11	66324583	rs678397	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=1.673;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:81,12:0.13:93
chr11	66325484	rs61890399	T	C	10346.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:97,451:0.82:548
chr11	66327673	rs1671064	G	A	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=4.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.608;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:328,68:0.17:396
chr11	66328095	rs1815739	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=4.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.649;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:254,40:0.14:294
chr11	66328877	rs607736	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.668;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.100;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr11	66333598	rs545009	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.425;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-1.311;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:378,54:0.12:432
chr11	66335308	rs2242663	T	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-2.744;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:149,27:0.15:176
chr11	66335548	rs1127894	A	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.629;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:156,38:0.20:194
chr11	66358126	rs486584	C	T	4028.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:35,168:0.83:203
chr11	66406070	rs670900	A	C	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	66410771	.	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.734;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr11	66436923	.	G	GT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.189;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr11	66438278	.	CA	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.908;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr11	66453629	rs139904707	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.419;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:202,30:0.13:232
chr11	66456387	rs2276138	T	C	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=24.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=-2.090;SOR=1.913;set=HC	GT:AD:AF:DP	0/1:27,58:0.68:85
chr11	66458696	rs12804382	C	T	1309.56	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:6,47:0.89:53
chr11	66469032	rs532439	T	C	4780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.00;ReadPosRankSum=1.713;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:30,209:0.87:239
chr11	66472274	rs4930388	T	C	5093.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	66481264	rs615536	C	T	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,51:0.82:62
chr11	66481633	rs34775878	G	A	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:25,168:0.87:193
chr11	66483265	rs12805133	A	G	5266.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:32,219:0.87:251
chr11	66512290	.	G	GGGC	3532.73	.	AC=1;AF=0.500;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	0/1:26,89:0.77:115
chr11	66812338	rs11227668	A	G	1963.78	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:8,70:0.90:78
chr11	66816211	rs149550378	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.230;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:121,23:0.16:144
chr11	66833265	rs12803688	G	A	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	66833327	rs12287978	G	A	12237.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:1,471:1.00:472
chr11	66834252	rs2282502	C	T	9001.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	66837965	rs4930409	T	C	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	66982717	rs189683982	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=2.449;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:112,22:0.16:134
chr11	66995603	rs3741189	T	C	8100.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	66995723	rs35247976	T	C	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:21,73:0.78:94
chr11	67012606	rs117322901	T	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=1.056;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:107,25:0.19:132
chr11	67017445	rs34463980	C	CA	3558.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	67050292	rs2071007	G	A	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-1.785;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:341,63:0.16:404
chr11	67051857	rs3730147	G	A	3023.81	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:15,123:0.89:138
chr11	67052466	rs10896164	G	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=5.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.936;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:255,43:0.14:298
chr11	67057092	rs368498130	GC	G	254.19	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr11	67057104	rs11227758	C	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.05;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	67071584	rs4244822	C	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.487;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:110,22:0.17:132
chr11	67076810	rs3737460	T	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.796;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=11.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.081;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:156,43:0.22:199
chr11	67135006	rs867193	A	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:15,92:0.86:107
chr11	67141184	rs35544864	C	CT	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=-0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.10;ReadPosRankSum=2.000;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr11	67160338	rs186662377	G	T	2804.18	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:11,107:0.91:118
chr11	67160961	rs2066496	A	G	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:24,135:0.85:159
chr11	67164791	rs872110	T	C	5698.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:33,211:0.86:244
chr11	67166337	rs2286619	G	A	6162.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:48,234:0.83:282
chr11	67166984	rs2286620	T	C	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:14,174:0.93:188
chr11	67167144	rs2286621	G	C	5448.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:55,246:0.82:301
chr11	67171736	rs2514256	C	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:9,98:0.92:107
chr11	67172911	rs61734600	C	T	5915.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:51,240:0.82:291
chr11	67173240	rs12805811	T	C	4387.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:22,160:0.88:182
chr11	67176898	rs11227788	A	G	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:12,77:0.87:89
chr11	67177278	rs7122299	G	A	8359.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	67183492	rs34596169	T	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:4,79:0.95:83
chr11	67186000	rs1790733	A	G	4016.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:33,167:0.83:200
chr11	67187352	rs12803820	C	T	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:26,158:0.86:184
chr11	67188466	rs77472930	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr11	67191346	rs3741180	C	T	8947.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:76,381:0.83:457
chr11	67191449	rs1790747	T	C	7168.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:63,277:0.81:340
chr11	67192107	rs1790748	T	A	182.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr11	67192332	.	C	CCACACACACACACA	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.73;ReadPosRankSum=-0.496;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr11	67192555	rs1626067	G	A	5162.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:48,230:0.83:278
chr11	67196237	rs1476792	T	C	2877.10	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:11,104:0.90:115
chr11	67196544	rs917570	C	G	2723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=12.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=-0.230;SOR=0.151;set=HC	GT:AD:AF:DP	0/1:24,114:0.83:138
chr11	67199706	rs1638588	C	A	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:20,89:0.82:109
chr11	67200812	rs55987642	C	T	13824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.64;ReadPosRankSum=-0.557;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:72,339:0.82:411
chr11	67200819	rs4930427	C	T	13922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.71;ReadPosRankSum=-0.940;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:71,342:0.83:413
chr11	67201008	rs1790753	C	T	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:13,64:0.83:77
chr11	67202044	rs1790752	G	A	5516.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:55,227:0.80:282
chr11	67202156	rs13859	C	T	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:21,66:0.76:87
chr11	67205978	rs872375	G	A	9971.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:82,427:0.84:509
chr11	67207426	rs2302264	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:5,36:0.88:41
chr11	67223920	rs1638564	CA	GC	7410.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;JOINED;set=Intersection	GT:AD:AF:DP	0/1:40,180:0.82:220
chr11	67257037	rs4084113	C	T	7199.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:32,287:0.90:319
chr11	67257273	rs611697	G	T	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	67257823	rs641081	C	A	9911.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:1,369:1.00:370
chr11	67258391	rs4930199	A	G	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	67259361	.	C	T	389.94	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr11	67259600	.	G	A	7509.77	.	AC=2;AF=1.00;AN=2;DP=362;set=Intersection	GT:AD:AF:DP	1/1:33,327:0.91:360
chr11	67262264	.	T	TGAGTGGGCGA	2982	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=3;HapScore=1;MGOF=29;MMLQ=17;MQ=60.15;NF=33;NR=10;PP=2982;QD=20;SC=GCCTCTCTGGTGAGTGGGCGA;SbPval=0.74;Source=Platypus;TC=58;TCF=42;TCR=16;TR=43;WE=67262272;WS=67262254;set=Platypus	GT:AD:AF:DP	1/1:15,43:0.74:58
chr11	67262282	rs202207490	C	CGA	5034.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	67262289	.	G	GCGAGAGGA	6173.73	.	AC=2;AF=1.00;AN=2;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.21;QD=49.39;SOR=2.501;set=HC	GT:AD:AF:DP	1/1:1,124:0.99:125
chr11	67263767	rs618633	A	G	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	67264679	rs2276120	C	T	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	67267043	.	T	TCCAA	347	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=2;HapScore=2;MGOF=94;MMLQ=27;MQ=60.12;NF=6;NR=2;PP=347;QD=44.125;SC=CATCCATCCATCCATCCATCC;SbPval=0.92;Source=Platypus;TC=16;TCF=9;TCR=7;TR=8;WE=67267051;WS=67267033;set=Platypus	GT:AD:AF:DP	1/0:8,8:0.50:16
chr11	67270154	rs117420640	G	A	6972.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:46,294:0.86:340
chr11	67352256	rs762803	C	A	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:33,207:0.86:240
chr11	67352689	rs1695	A	G	9354.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:104,425:0.80:529
chr11	67353844	rs1871042	C	T	10848.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:95,464:0.83:559
chr11	67353970	rs4891	T	C	9122.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:42,396:0.90:438
chr11	67372477	rs12421329	G	T	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:39,172:0.82:211
chr11	67372593	rs12793832	A	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr11	67374581	rs1871043	T	C	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:19,102:0.84:121
chr11	67375162	rs1382089	T	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	67375184	rs7948073	T	G	371.82	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr11	67395714	rs7124513	C	T	5385.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:67,232:0.78:299
chr11	67399735	rs2514021	T	C	8265.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	67401635	rs12787511	G	C	4083.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:40,172:0.81:212
chr11	67402362	rs3758938	T	G	4855.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:52,214:0.80:266
chr11	67407146	rs2447591	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	67412203	rs143278298	C	CCA	1134.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.729;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.467;QD=23.15;ReadPosRankSum=0.543;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,42:0.86:49
chr11	67414492	rs948445	C	T	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	67430589	rs78402723	A	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	67430762	rs1551886	T	C	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	67431038	rs1979375	G	A	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	67431110	rs1979376	G	A	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	67432804	rs2447571	T	C	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr11	67432854	rs6591270	T	C	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	67433708	rs5792424	C	CG	5626.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr11	67433758	rs1551887	G	A	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	67433869	rs1551888	C	T	6164.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.71;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	67434010	rs1871032	C	T	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:27,105:0.80:132
chr11	67434416	rs4646823	C	A	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr11	67564034	rs79787139	A	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	67564056	rs74682508	T	A	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	67564068	rs77439896	C	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	67564135	rs77521350	G	C	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	67564181	rs79260939	G	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-3.314;QD=1.12;ReadPosRankSum=0.101;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:165,32:0.16:197
chr11	67564197	rs72657419	T	C	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	67765163	rs5792426	A	AG	4751.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	67786064	rs11433668	A	AC	4473.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	67789293	rs58160034	G	GC	14499.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	67795378	rs11436139	G	GC	14031.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr11	67799731	rs3133266	C	G	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	67800494	rs3115545	T	G	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	67801282	rs3133267	C	T	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	67801496	rs12803743	T	C	8227.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:55,367:0.87:422
chr11	67801517	rs3115546	G	T	9739.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	67803215	rs2075627	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=1.323;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr11	67804156	rs3133269	C	T	226.79	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	67814473	rs5792432	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.079;QD=2.30;ReadPosRankSum=0.721;SOR=3.033;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr11	67814843	rs72926467	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.405;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:106,24:0.18:130
chr11	67814979	rs2471829	G	C	12347.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr11	67842369	rs2512611	C	T	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	67888793	.	G	GCTGCGGCGA	777.74	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:2,20:0.91:22
chr11	67941390	rs3832715	G	GA	1691.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.297;QD=21.69;ReadPosRankSum=1.251;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:2,76:0.97:78
chr11	67957518	rs2512606	A	T	9958.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	68029937	rs146708926	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.894;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:106,27:0.20:133
chr11	68080214	.	C	CGCT	2015.73	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:13,53:0.80:66
chr11	68115764	rs643981	C	T	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	68131167	rs10791978	A	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	68133035	rs314776	T	C	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	68153710	rs17848255	C	T	4005.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:25,154:0.86:179
chr11	68154188	rs4988319	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-2.208;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:206,35:0.15:241
chr11	68157299	rs4988320	G	A	4217.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:34,181:0.84:215
chr11	68170825	rs687482	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	68170833	rs686921	G	T	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.889;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=0.627;SOR=1.680;set=HC	GT:AD:AF:DP	0/1:8,45:0.85:53
chr11	68171013	rs545382	T	C	10129.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	68174122	rs2277268	G	A	7019.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:53,296:0.85:349
chr11	68177510	rs2306862	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-2.361;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:250,43:0.15:293
chr11	68177614	rs4988322	T	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:6,69:0.92:75
chr11	68179125	rs2242339	C	T	4169.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:51,178:0.78:229
chr11	68179166	rs689179	A	G	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:18,92:0.84:110
chr11	68192518	rs554734	T	G	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	68200945	rs12416761	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr11	68201007	rs12417014	C	T	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:23,112:0.83:135
chr11	68201040	rs78905734	G	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=5.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.473;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:171,39:0.19:210
chr11	68206173	rs901824	T	C	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	68206197	rs901825	G	C	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	68207438	rs2291466	C	A	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	68214119	rs2242340	C	T	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	68305494	rs60212556	C	T	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	68315798	rs10736668	C	A	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	68326236	rs12271290	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	68341722	rs3740631	T	G	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	68343593	rs3740629	C	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	68358106	rs5792446	CTTTTA	C	2830.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	68377602	rs7104877	A	C	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	68382193	rs12941	C	T	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	68382591	rs1996	C	T	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	68452985	rs694066	G	A	7356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-1.023;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:57,323:0.85:380
chr11	68456410	rs3136540	T	C	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.552;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:319,61:0.16:380
chr11	68512543	rs12365708	A	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.674;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr11	68530318	rs7112615	C	A	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	68548260	rs3019576	C	A	6593.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	68549340	rs2228502	A	G	7595.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	68566647	.	GAAA	G	3224.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=6.549;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.677;QD=35.44;ReadPosRankSum=-0.360;SOR=1.677;set=HC	GT:AD:AF:DP	0/1:16,75:0.82:91
chr11	68566648	.	A	AC	2966	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=4;HapScore=1;MGOF=3;MMLQ=24;MQ=60.24;NF=33;NR=14;PP=2966;QD=20;SC=CTTCATACGGAAAAATTTCAT;SbPval=0.6;Source=Platypus;TC=58;TCF=40;TCR=18;TR=47;WE=68566659;WS=68566638;set=Platypus	GT:AD:AF:DP	0/1:11,47:0.81:58
chr11	68566649	.	AAA	GCT	2755	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=4;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=41;NR=13;PP=2755;QD=20;SC=TTCATACGGAAAAATTTCATC;SbPval=0.55;Source=Platypus;TC=78;TCF=59;TCR=19;TR=54;WE=68566659;WS=68566638;set=Platypus	GT:AD:AF:DP	0/1:24,54:0.69:78
chr11	68566651	.	A	ACGCT	3224.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.617;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=6.440;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.711;QD=34.31;ReadPosRankSum=-0.058;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:18,76:0.81:94
chr11	68566839	rs3019603	G	A	3984.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:5,170:0.97:175
chr11	68660330	rs117227565	G	A	7895.94	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:41,336:0.89:377
chr11	68668208	rs668576	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.903;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:164,26:0.14:190
chr11	68671104	rs629426	A	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.665;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:74,18:0.20:92
chr11	68671477	rs1249463	T	C	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	68671620	rs117300097	C	G	755.85	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:3,29:0.91:32
chr11	68676265	rs79737766	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr11	68678962	rs560096	T	C	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	68682320	rs76707931	C	T	5291.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:61,228:0.79:289
chr11	68696694	rs148157556	C	T	4592.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:26,189:0.88:215
chr11	68696885	rs118002016	G	A	6227.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:46,276:0.86:322
chr11	68700967	rs112575423	A	G	5501.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:36,239:0.87:275
chr11	68703009	rs598255	C	G	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	68703959	rs622082	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.030;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:205,29:0.12:234
chr11	68704264	rs546382	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.384;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:200,29:0.13:229
chr11	68748003	rs34847539	T	C	7206.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:44,305:0.87:349
chr11	68773810	rs57545280	AG	A	202.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	68776964	rs117345641	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:12,66:0.85:78
chr11	68777183	rs11228437	G	T	2634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.08;ReadPosRankSum=-1.881;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:15,110:0.88:125
chr11	68777323	rs11544721	T	C	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,50:0.82:61
chr11	68816370	rs4930642	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	68822739	rs1470892	T	C	21864.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:0,811:1.00:811
chr11	68822831	rs72917389	C	T	5308.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:49,205:0.81:254
chr11	68825037	rs3750973	A	C	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	68831293	rs11228472	C	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-2.371;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr11	68831364	rs72928978	G	A	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:28,137:0.83:165
chr11	68834968	rs6591368	T	C	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	68838028	rs3829236	C	T	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:16,90:0.85:106
chr11	68839334	rs10896415	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.136;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:323,47:0.13:370
chr11	68839949	rs896969	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr11	68840014	rs3750963	G	A	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.897;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:109,37:0.25:146
chr11	68840397	rs1466221	T	C	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.061;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:129,21:0.14:150
chr11	68840412	rs1466220	C	G	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-1.116;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:147,26:0.15:173
chr11	68840617	rs3750966	T	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr11	68845867	rs7945151	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.276;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.636;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:63,11:0.15:74
chr11	68846098	rs4930649	A	G	13858.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr11	68846399	rs35264875	A	T	9631.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:78,409:0.84:487
chr11	68846519	rs7124310	A	C	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	68847138	rs12804893	T	C	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	68850773	rs1542334	G	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	68851414	rs2376558	T	C	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	68851466	rs896973	G	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.902;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-1.658;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:145,24:0.14:169
chr11	68851547	rs72928652	G	A	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:10,63:0.86:73
chr11	68853504	rs2290421	C	T	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:20,102:0.84:122
chr11	68854012	rs35337391	A	G	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:19,109:0.85:128
chr11	68855197	rs1123665	T	G	601.78	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr11	68855363	rs3829241	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.545;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr11	68855483	rs1551306	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	69063136	rs7117236	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=3.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-1.374;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:177,27:0.13:204
chr11	69063393	rs7103126	T	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=3.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.376;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:285,53:0.16:338
chr11	69063510	rs11539762	G	A	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=5.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=1.915;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:228,41:0.15:269
chr11	69063728	rs11228610	G	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=1.172;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:175,28:0.14:203
chr11	69462910	rs9344	G	A	9667.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:66,399:0.86:465
chr11	69466115	rs7177	C	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr11	69482941	rs150140763	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.843;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr11	69489422	rs113966981	C	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr11	69588729	rs2073464	G	A	10920.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr11	69589959	rs9666584	A	G	46.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	69625511	rs7932320	T	C	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:17,113:0.87:130
chr11	69630973	rs3926882	G	A	5181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.22;ReadPosRankSum=0.573;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:29,127:0.81:156
chr11	69630978	rs7483837	G	A	5363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.094;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.31;ReadPosRankSum=1.452;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:33,133:0.80:166
chr11	69924226	rs2509134	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	69924352	rs11233117	C	G	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr11	69924476	.	T	G	44	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=5;HapScore=2;MGOF=32;MMLQ=22;MQ=60.0;NF=1;NR=4;PP=44;QD=15.7542425094;SC=AGCAGCCGGGTGGCGGCGCGA;SbPval=0.91;Source=Platypus;TC=18;TCF=7;TCR=11;TR=5;WE=69924484;WS=69924466;set=Platypus	GT:AD:AF:DP	1/0:13,5:0.28:18
chr11	69931876	rs2509128	C	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	69933717	rs2509133	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr11	69949135	rs55698329	GCC	G	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:46,9:0.16:55
chr11	69949327	rs2509147	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.407;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr11	69954412	rs2509182	A	G	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	69957940	rs2515251	C	A	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	69962642	rs2515245	A	G	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	69970412	rs2509160	G	A	9148.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr11	69970637	rs2515258	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	69978358	rs2515264	G	C	1018.18	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,35:0.92:38
chr11	69999122	rs10160639	A	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr11	69999252	rs3781663	G	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr11	70001976	rs10751195	A	G	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:7,72:0.91:79
chr11	70002185	rs34657087	AT	A	1113.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:4,56:0.93:60
chr11	70002987	rs3781658	G	A	2327.81	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:10,93:0.90:103
chr11	70007311	rs2276066	A	G	6221.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:52,258:0.83:310
chr11	70007392	rs2276067	A	G	9674.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:88,428:0.83:516
chr11	70007484	rs2276068	C	G	5037.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:38,200:0.84:238
chr11	70007865	rs2155461	A	C	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	70009720	rs11235460	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr11	70013186	rs3781654	G	T	1248.81	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:5,48:0.91:53
chr11	70016247	rs35843284	T	TG	1835.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:15,62:0.81:77
chr11	70016922	rs7127005	C	T	8384.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:35,201:0.85:236
chr11	70016944	rs3842255	AT	A	10922.73	.	AC=1;AF=0.500;AN=2;DB;DP=325;MQ=60.27;set=Intersection	GT:AD:AF:DP	0/1:48,276:0.85:324
chr11	70031909	rs7937532	C	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:6,43:0.88:49
chr11	70049523	rs1131677	A	G	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:21,127:0.86:148
chr11	70118251	rs670012	T	G	717.94	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr11	70171567	rs113854811	TAC	T	1418.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr11	70171837	rs12280045	A	G	421.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.83;MQRankSum=-0.171;QD=22.20;ReadPosRankSum=-0.384;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	70172975	rs6592537	C	T	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:7,72:0.91:79
chr11	70179672	rs2282481	C	T	2808.89	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:14,120:0.90:134
chr11	70183737	rs17425511	C	G	535.90	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr11	70185325	rs1061328	C	T	5067.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:51,219:0.81:270
chr11	70190019	rs55738915	C	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr11	70194175	rs7935969	G	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,44:0.85:52
chr11	70196302	rs66542029	A	T	1332.82	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:6,48:0.89:54
chr11	70200529	rs17853270	C	T	6431.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:46,273:0.86:319
chr11	70200594	rs7943389	C	T	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	70202127	rs66989619	G	C	727.82	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr11	70208311	rs7130178	G	A	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:28,149:0.84:177
chr11	70208350	rs10751231	G	A	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	70211384	rs60917762	C	T	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:24,134:0.85:158
chr11	70211574	rs670310	A	G	6363.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:66,279:0.81:345
chr11	70218548	rs10466703	C	T	5081.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:33,201:0.86:234
chr11	70221204	rs67283107	C	T	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:14,87:0.86:101
chr11	70228032	rs10635017	A	ATC	481.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr11	70229171	rs552282	G	A	3775.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:24,148:0.86:172
chr11	70253389	rs2298396	C	T	428.78	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr11	70253475	rs2298397	C	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:16,53:0.77:69
chr11	70253586	rs569732	T	C	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:22,96:0.81:118
chr11	70260598	rs34053053	C	T	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:16,88:0.85:104
chr11	70260609	rs7932550	T	C	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:22,110:0.83:132
chr11	70268910	rs12802851	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr11	70281007	rs7131282	T	C	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:5,70:0.93:75
chr11	70282629	rs6894	A	C	1658.18	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:9,70:0.89:79
chr11	70348852	.	C	CG	441.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=33.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	70349061	rs7110158	A	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	70507605	.	TAC	T	936.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=6.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.65;ReadPosRankSum=1.302;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:4,34:0.89:38
chr11	70672399	rs3019835	G	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	70757705	rs4246962	C	T	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	70766554	rs4077321	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	70766664	rs4495913	A	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	70798895	rs35132270	CG	C	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.057;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:149,20:0.12:169
chr11	70798902	rs34650500	G	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.073;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:162,23:0.12:185
chr11	70829858	rs3924047	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.521;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:211,38:0.15:249
chr11	71146248	rs141483210	AAGCAAGGAACAG	A	3993.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:23,100:0.81:123
chr11	71146577	rs909217	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.233;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:120,19:0.14:139
chr11	71146691	rs760241	A	G	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	71146952	rs1792268	G	A	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	71149069	rs949176	A	G	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	71150217	rs2852853	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.018;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr11	71152258	rs736894	C	T	1815.96	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:9,77:0.90:86
chr11	71152461	rs949177	A	G	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	71153459	rs11603330	C	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.199;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:336,49:0.13:385
chr11	71155153	rs1790334	A	G	11158.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:2,424:1.00:426
chr11	71155171	rs1044482	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.656;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:379,57:0.13:436
chr11	71164471	rs12789751	G	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.905;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr11	71164544	rs12791871	A	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr11	71166060	rs2276359	T	TG	461.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:69,21:0.23:90
chr11	71166337	rs1790373	A	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	71169547	rs2276360	G	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.776;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.513;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:175,41:0.19:216
chr11	71174452	rs2276362	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.397;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:331,56:0.14:387
chr11	71174553	rs1629220	C	T	6054.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:43,264:0.86:307
chr11	71174589	rs1629304	T	C	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	71183474	rs2282621	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.612;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:128,18:0.12:146
chr11	71183477	rs2282620	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.697;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:125,18:0.13:143
chr11	71183645	rs2282619	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	71184190	rs7935125	C	A	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.349;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=11.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.519;SOR=2.639;set=HC	GT:AD:AF:DP	0/1:92,17:0.16:109
chr11	71184498	rs2276358	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr11	71184678	rs7950441	A	C	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	71185479	rs2276354	T	C	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	71185518	rs2186778	T	C	9732.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:1,368:1.00:369
chr11	71187061	rs2017686	C	G	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:15,91:0.86:106
chr11	71188361	rs68009340	TCACA	T	7417.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:67,184:0.73:251
chr11	71188502	rs3794065	G	A	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	71189436	rs2276353	T	C	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	71191604	rs74471702	G	A	615.03	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr11	71192602	rs3814731	T	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	71192851	rs3814734	A	G	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	71193135	rs7949129	G	C	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:34,139:0.80:173
chr11	71259997	rs61746411	G	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.813;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:340,65:0.16:405
chr11	71260243	rs2664	T	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.983;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:433,87:0.17:520
chr11	71260296	rs2663	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.433;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:214,38:0.15:252
chr11	71576817	rs57369261	G	GT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=2.354;QD=1.24;ReadPosRankSum=-0.734;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:145,39:0.21:184
chr11	71634606	rs11446262	G	GT	172.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=1.464;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	71668362	rs3216157	CT	C	2259.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	71671692	rs78708286	G	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.631;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:76,12:0.14:88
chr11	71701502	rs2276385	G	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.280;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr11	71701523	rs2276384	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	71701763	rs35844388	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=4.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.862;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:153,25:0.14:178
chr11	71707465	rs1055452	T	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	71712175	rs1892919	G	A	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:19,124:0.87:143
chr11	71714526	rs949324	G	C	11583.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	71714526	.	GGT	CGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=142;NR=90;PP=2947;QD=20;SC=GACCAGGTGAGGTCAGCATCG;SbPval=0.53;Source=Platypus;TC=243;TCF=149;TCR=94;TR=232;WE=71714536;WS=71714516;set=Platypus	GT:AD:AF:DP	1/1:11,232:0.95:243
chr11	71714528	rs949323	T	G	11632.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	71715139	rs199699067	G	A	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=6.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.367;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:269,70:0.21:339
chr11	71715215	rs2845857	C	G	7592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=5.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.52;ReadPosRankSum=0.848;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:51,319:0.86:370
chr11	71715218	rs2852365	T	C	15885.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.25;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr11	71717106	rs61745941	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.717;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr11	71719328	.	C	CT	25	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=9;HapScore=2;MGOF=10;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=25;QD=13.0;SC=TCCAAGGTTCCTTTTTTTTTC;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=3;WE=71719336;WS=71719318;set=Platypus	GT:AD:AF:DP	0/1:9,3:0.25:12
chr11	71719619	rs2155145	G	T	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	71726168	rs3750913	G	C	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.606;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:357,71:0.17:428
chr11	71727422	rs1057992	A	C	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	71728543	rs34393610	G	GA	1594.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:24,85:0.78:109
chr11	71728908	rs11278712	AGTCAAC	A	1679.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:4,42:0.91:46
chr11	71729383	rs113691033	T	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.920;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:163,37:0.18:200
chr11	71729656	rs949325	A	G	766.82	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr11	71730715	rs2298456	T	A	502.31	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr11	71733519	rs10128658	C	T	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:12,61:0.84:73
chr11	71734211	rs2298457	T	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:14,62:0.82:76
chr11	71740378	rs35948003	A	AAC	6036.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:21,152:0.88:173
chr11	71740521	rs1939247	A	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr11	71797422	rs597513	T	A	7375.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:48,311:0.87:359
chr11	71804513	rs2250866	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-2.210;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr11	71805732	rs34329029	T	TGA	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=1.255;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr11	71816092	rs12293885	T	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.678;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:199,32:0.14:231
chr11	71816219	rs12272213	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.133;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:67,12:0.15:79
chr11	71817015	.	A	G	2009.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:21,88:0.81:109
chr11	71821236	rs17161980	A	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.475;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:200,47:0.19:247
chr11	71822401	rs3750908	A	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.286;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:62,11:0.15:73
chr11	71849741	rs652197	C	T	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	71883540	rs633738	G	A	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	71929526	rs651646	T	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr11	71932120	rs2508202	G	C	4960.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	71932414	rs2298444	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.538;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:122,19:0.13:141
chr11	71936225	rs144989913	GGCTCCTTGCGGGCTGGCGTGGACCGGGA	G	842.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:2,22:0.92:24
chr11	71941212	rs2276048	A	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=2.159;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:172,38:0.18:210
chr11	71941812	rs12361913	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.471;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr11	71949064	rs11235472	C	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr11	72013158	.	G	T	607.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr11	72281818	rs380126	A	G	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	72281884	rs433640	C	T	11547.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	72282039	rs409512	T	C	21996.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,839:1.00:839
chr11	72289176	rs379276	C	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	72289291	rs1135029	T	C	6816.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	72290199	rs11605051	G	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	72291477	rs56350365	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	72291883	rs644698	C	A	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	72291927	rs577536	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	72292167	rs3781939	G	T	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.41;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	72292176	rs7108477	C	T	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.71;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	72292185	rs3781938	C	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	72292353	rs57803658	G	GA	4875.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	72292860	rs376724	C	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	72293039	rs379638	G	A	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	72293079	rs414178	A	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	72293602	rs4944557	A	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	72294714	rs408269	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	72294734	rs56267207	A	AC	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	72295502	rs366711	T	C	12105.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr11	72295906	rs452228	A	G	10343.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	72296039	rs907850	G	T	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	72296700	rs424234	C	T	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	72307501	.	ATC	A	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.572;QD=1.47;ReadPosRankSum=-1.085;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr11	72326210	rs572421	A	G	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	72354028	rs907853	C	A	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr11	72361883	rs341038	T	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	72361893	rs72349218	TCCCTGAC	T	1604.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	72361920	rs72326199	TAC	T	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.815;QD=15.33;ReadPosRankSum=-0.507;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,37:0.77:48
chr11	72363759	rs12146545	G	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.642;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:236,58:0.20:294
chr11	72366929	rs907858	C	A	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	72367102	rs907857	C	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	72368986	rs3781916	T	G	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr11	72396800	rs12802369	A	G	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	72396990	rs12805218	G	A	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	72399607	rs2306609	G	A	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	72404003	rs11235567	A	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	72404958	rs12276972	A	C	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	72405868	rs2306608	C	T	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	72407770	rs2306612	G	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	72407977	rs11602233	C	A	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	72408657	rs2291289	C	T	7726.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	72411082	rs7110501	T	C	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	72411099	rs10898866	C	T	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	72412675	rs11235574	A	G	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	72414189	rs3765105	G	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	72528973	rs891655	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	72532569	rs1864651	G	T	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	72532621	rs1864652	T	G	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	72532708	rs11235603	C	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	72533711	rs4944806	A	G	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	72538141	rs3862793	T	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.82;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	72540225	rs891657	G	T	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	72598704	rs7129851	G	A	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	72788750	rs143191185	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:28,78:0.74:106
chr11	72945341	rs2511241	C	T	8428.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:72,346:0.83:418
chr11	72945651	rs147817701	C	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=1.197;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:201,46:0.19:247
chr11	72946020	rs1783596	C	T	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.623;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.422;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:578,130:0.18:708
chr11	73100232	rs11826896	C	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:7,76:0.92:83
chr11	73100320	rs11826909	C	G	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=0.751;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:16,78:0.83:94
chr11	73104842	rs142455990	T	TC	6343.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:28,227:0.89:255
chr11	73106088	rs28641751	C	G	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:15,104:0.87:119
chr11	73106237	rs11544311	A	C	4210.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:35,176:0.83:211
chr11	73106294	rs17851510	A	C	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:21,103:0.83:124
chr11	73106408	rs7112924	C	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:9,104:0.92:113
chr11	73106690	rs7101831	T	C	667.88	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr11	73120653	rs10793060	A	G	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:12,77:0.87:89
chr11	73122340	rs1938777	A	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr11	73141627	rs11823913	C	G	294.31	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr11	73364368	rs6592527	C	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.574;SOR=2.244;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr11	73364629	rs7942217	T	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.834;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr11	73366697	rs2008734	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=0.746;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr11	73371842	rs147173613	C	G	9632.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:88,422:0.83:510
chr11	73390772	rs71469461	GAA	G	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.124;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:145,18:0.11:163
chr11	73441743	rs72976849	T	A	1887.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=0.083;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,88:0.86:102
chr11	73441772	rs2037709	A	C	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	73441913	rs72976851	T	C	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:3,55:0.95:58
chr11	73471036	rs72976884	C	T	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:26,252:0.91:278
chr11	73498933	rs1792174	T	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr11	73499066	.	C	CGGGGAGATGGCGGACGGTGCAGAGA	2510.73	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:11,62:0.85:73
chr11	73528717	rs1670564	G	C	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:5,96:0.95:101
chr11	73669310	rs10793068	C	A	7734.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:44,327:0.88:371
chr11	73669334	rs10793069	A	C	7487.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:46,329:0.88:375
chr11	73670645	rs653263	T	C	4411.10	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:22,190:0.90:212
chr11	73670795	rs148856834	ATTATT	A	3785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=5.437;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.529;QD=35.71;ReadPosRankSum=0.659;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:12,94:0.89:106
chr11	73679219	rs2306817	G	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:7,70:0.91:77
chr11	73679232	rs2306818	A	G	1878.22	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:9,83:0.90:92
chr11	73681090	rs2306819	C	T	12489.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:107,527:0.83:634
chr11	73681135	rs72982975	G	A	12236.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:107,532:0.83:639
chr11	73685896	.	A	AGAAAGAGGGAAGGTGGTAGGTAAAGGAGCGGAAGGAAGAGGTGGG	897.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=47.25;ReadPosRankSum=-0.764;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr11	73686859	rs10535527	ACTT	A	877.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr11	73689104	rs660339	G	A	6004.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:47,239:0.84:286
chr11	73712708	rs3837411	G	GTC	678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.40;ReadPosRankSum=0.885;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr11	73715542	rs2075577	G	A	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:12,126:0.91:138
chr11	73715666	rs2734828	G	A	3502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=4.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=0.080;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:21,153:0.88:174
chr11	73717024	rs1726747	AT	TC	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	0/1:8,52:0.87:60
chr11	73745658	.	A	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.075;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:75,12:0.14:87
chr11	73785326	rs4453265	T	C	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:18,110:0.86:128
chr11	73789777	rs1726735	T	G	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:17,102:0.86:119
chr11	73796608	rs1095424	T	C	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	73796917	rs826058	C	T	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:4,53:0.93:57
chr11	73803398	rs1790400	C	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr11	73809278	rs17132707	G	A	5169.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:46,226:0.83:272
chr11	73814069	.	G	C	3414.77	.	AC=1;AF=0.500;AN=2;DP=148;set=Intersection	GT:AD:AF:DP	0/1:17,129:0.88:146
chr11	73833957	rs145193996	C	CTGTCTGGCAAGTGA	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	73882260	rs1726746	T	G	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:26,112:0.81:138
chr11	73914967	.	T	C	568.89	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr11	73984657	.	G	GA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=4.156;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.692;QD=1.65;ReadPosRankSum=-1.752;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:102,27:0.21:129
chr11	73999939	.	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-3.481;QD=11.05;ReadPosRankSum=1.860;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	73999942	.	A	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-3.224;QD=13.40;ReadPosRankSum=1.324;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	73999949	.	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-3.224;QD=13.15;ReadPosRankSum=1.544;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	73999955	.	C	T	151.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-3.582;QD=10.12;ReadPosRankSum=1.859;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr11	73999956	.	T	C	151.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-3.582;QD=10.12;ReadPosRankSum=1.785;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr11	73999987	.	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-3.756;QD=3.67;ReadPosRankSum=-1.214;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr11	73999991	.	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-3.888;QD=3.28;ReadPosRankSum=-1.831;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr11	73999993	rs58730111	CA	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-0.000;QD=3.84;ReadPosRankSum=1.145;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	74000180	.	T	TA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.818;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr11	74015281	rs75721221	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr11	74022429	rs7944333	C	T	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:34,214:0.86:248
chr11	74047683	rs1044782	A	G	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.006;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:462,105:0.19:567
chr11	74049569	rs3867270	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-1.961;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:243,38:0.14:281
chr11	74054346	rs641271	G	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.290;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:104,17:0.14:121
chr11	74057647	rs519083	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr11	74057931	rs3741130	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.702;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:190,37:0.16:227
chr11	74085420	rs35170680	T	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=1.521;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:79,12:0.13:91
chr11	74109342	rs904155	C	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	74203308	rs586088	T	A	6665.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	74204198	rs10736797	G	A	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	74204269	rs10736798	T	G	6664.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	74204727	rs4944895	A	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	74207856	rs643738	G	A	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	74208029	rs655025	C	T	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	74208214	rs656506	G	A	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	74208592	rs657339	G	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	74303841	rs2298572	T	C	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=1.481;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	74340196	rs2298792	A	G	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	74345550	rs3824999	T	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	74347434	rs4944920	G	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	74408384	rs10751240	C	T	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	74408619	rs3741124	C	G	18745.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,693:1.00:693
chr11	74408633	rs3741123	A	G	17998.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr11	74408740	rs3741122	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.534;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:318,45:0.12:363
chr11	74429987	rs12417156	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.089;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr11	74431277	rs4944943	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.076;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr11	74441796	rs11236234	T	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.304;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:52,11:0.17:63
chr11	74460148	rs148370424	C	T	463.53	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr11	74555056	rs3814726	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.758;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr11	74563077	rs2304683	G	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-1.242;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:178,30:0.14:208
chr11	74641436	.	GA	G	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-2.130;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr11	74645032	rs140602440	G	GTTCA	2306.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:18,59:0.77:77
chr11	74660504	rs1282689	A	C	6997.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:49,277:0.85:326
chr11	74660631	rs1282690	G	A	9015.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:64,381:0.86:445
chr11	74674612	rs71848982	GTTTA	G	927.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.99;ReadPosRankSum=0.133;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr11	74676794	rs514534	G	C	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	74700896	rs681566	A	G	5988.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	74705696	rs544115	T	C	19380.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr11	74862356	rs2851069	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-0.925;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr11	74862391	rs1944612	A	G	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	74904362	rs1621378	T	C	10640.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr11	74982882	rs36123903	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr11	74993182	rs526013	A	G	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	74995226	rs480174	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:13,58:0.82:71
chr11	75017436	rs536852	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	75023093	rs546812	A	G	13787.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr11	75141630	rs11236430	T	C	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:13,77:0.86:90
chr11	75141762	rs3018101	T	C	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.23;ReadPosRankSum=-1.392;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:8,52:0.87:60
chr11	75152243	rs571353	C	T	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	75154067	rs532454	C	T	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	75155743	rs479574	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	75160213	rs473462	G	A	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	75160575	rs518611	G	A	8306.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	75167704	rs1793410	T	C	9018.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	75188569	rs1790149	C	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	75277628	rs584961	A	G	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	75277992	rs651581	C	T	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	75278040	rs35462148	G	GTCC	6647.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:4,152:0.97:156
chr11	75282740	.	G	A	2377.77	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:13,88:0.87:101
chr11	75298797	rs1231128	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.878;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:58,11:0.16:69
chr11	75378674	rs12225010	A	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	75501852	rs2510635	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	75898329	rs11823833	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.507;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:80,16:0.17:96
chr11	75902571	rs2508779	A	G	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	75907438	rs3215303	AC	A	6617.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	75917334	rs1879633	T	C	10865.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr11	76114885	rs80006998	T	C	4564.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:33,202:0.86:235
chr11	76115231	rs7113820	G	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:13,62:0.83:75
chr11	76169154	rs34407750	T	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:5,56:0.92:61
chr11	76207199	rs74680029	G	C	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:29,132:0.82:161
chr11	76207633	rs10899226	G	A	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	76227182	rs2508740	G	A	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.888;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:161,32:0.17:193
chr11	76234185	rs11600501	C	T	5631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=1.128;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:49,234:0.83:283
chr11	76260909	.	C	CT	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.155;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:39,29:0.43:68
chr11	76370792	rs4304809	A	G	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	76371418	rs79525962	C	T	3245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=0.022;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:28,140:0.83:168
chr11	76372418	rs3740778	T	C	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	76405542	rs78808837	G	A	966.22	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:6,40:0.87:46
chr11	76405613	rs12221921	C	T	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.73;ReadPosRankSum=0.292;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:11,67:0.86:78
chr11	76405740	rs148326908	T	TA,TAA	863.74	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=65;set=Intersection	GT:AF:DP	0/1:0.84:58
chr11	76405872	rs10736809	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	76406341	rs10751260	G	C	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	76414249	rs80176488	GT	G	885.74	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr11	76415209	rs10899257	G	A	2114.03	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:11,86:0.89:97
chr11	76415468	rs11236879	C	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr11	76418482	rs11607917	T	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.373;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:268,48:0.15:316
chr11	76418737	rs2120898	A	G	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	76427731	rs10751261	T	C	14547.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr11	76429160	rs10899266	T	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.97;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	76430529	rs7122287	C	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	76430760	.	C	G	3599.77	.	AC=1;AF=0.500;AN=2;DP=179;set=Intersection	GT:AD:AF:DP	0/1:23,155:0.87:178
chr11	76507692	rs1149621	T	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-1.258;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:84,17:0.17:101
chr11	76579419	.	A	ATC	142	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=2;MGOF=18;MMLQ=23;MQ=60.0;NF=2;NR=3;PP=142;QD=30.2;SC=TAGTTTTAATATCTCTCTCTC;SbPval=0.14;Source=Platypus;TC=15;TCF=2;TCR=13;TR=5;WE=76579427;WS=76579409;set=Platypus	GT:AD:AF:DP	1/0:10,5:0.33:15
chr11	76579435	.	CTG	C	40	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.4999;HP=2;HapScore=4;MGOF=22;MMLQ=23;MQ=60.0;NF=1;NR=3;PP=40;QD=10.75;SC=CTCTCTCTCTCTGTGTGTGTG;SbPval=0.32;Source=Platypus;TC=11;TCF=1;TCR=10;TR=4;WE=76579445;WS=76579425;set=Platypus	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	76579437	.	G	C	76	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=2;HapScore=4;MGOF=22;MMLQ=22;MQ=60.0;NF=1;NR=4;PP=76;QD=22.1542425094;SC=CTCTCTCTCTGTGTGTGTGTG;SbPval=0.92;Source=Platypus;TC=17;TCF=7;TCR=10;TR=5;WE=76579445;WS=76579425;set=Platypus	GT:AD:AF:DP	1/0:12,5:0.29:17
chr11	76727866	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.20;ReadPosRankSum=1.355;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:180,31:0.15:211
chr11	76751166	rs73493606	G	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=1.178;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:498,81:0.14:579
chr11	76751541	rs11292198	CT	C	19556.73	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr11	76751584	rs11292199	CT	C	23028.73	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr11	76751603	rs11292200	CT	C	22680.73	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr11	76795839	rs12362168	A	G	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:25,160:0.86:185
chr11	76799004	rs7121748	T	C	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	76814110	rs2233549	G	A	8659.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:87,364:0.81:451
chr11	76893280	rs57741157	A	AG	2329.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	76900300	rs188985726	G	A	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:13,62:0.83:75
chr11	76924130	rs2276289	A	T	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	76925075	rs948959	G	T	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	76927876	rs142202405	ATTC	A	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;MQ=60.98;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	76928149	rs2282576	A	G	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	76944015	rs4945161	G	A	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	76954788	rs34784710	T	TA	4575.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	76954812	rs11237145	T	C	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	76954833	rs11237146	G	A	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	77051683	rs2725832	G	C	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	77069746	rs2250647	A	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	77069790	rs2250639	G	A	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	77090211	rs562939	T	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	77330747	rs75346522	A	C	7308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.34;ReadPosRankSum=1.524;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:61,317:0.84:378
chr11	77389238	rs10567840	CTT	C,CT	949.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.621;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.593;QD=12.83;ReadPosRankSum=1.408;SOR=2.215;set=HC	GT:AD:AF:DP	1/2:9,22,43:0.30,0.58:74
chr11	77531810	rs10751277	T	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	77629069	rs192451282	G	A	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-0.127;QD=17.21;ReadPosRankSum=-0.169;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr11	77672189	.	TA	T	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.544;QD=2.02;ReadPosRankSum=0.828;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:75,31:0.29:106
chr11	77705536	rs2016147	C	A	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:29,137:0.83:166
chr11	77734209	rs11237362	T	C	8874.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	77734371	rs12420553	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:15,70:0.82:85
chr11	77775466	rs545869	C	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=0.886;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr11	77790653	rs534418	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.210;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=8.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.214;SOR=2.896;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr11	77790863	rs499799	C	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.109;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:104,23:0.18:127
chr11	77811990	rs1263505	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	77813941	rs640016	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	77813997	rs35218171	CA	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.14;ReadPosRankSum=-0.271;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr11	77820670	rs1783515	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.348;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	77820673	rs1789032	T	C	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	77825064	rs572693	A	G	6873.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:43,289:0.87:332
chr11	77825275	rs10899440	A	G	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.701;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:152,39:0.20:191
chr11	77825508	rs678277	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr11	77825642	rs653721	A	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	77825697	rs653368	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr11	77830465	rs374346497	TTTTTTTTAA	T	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;MQRankSum=1.411;QD=22.38;ReadPosRankSum=-0.123;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	77832076	rs518624	T	A	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	77834994	rs498278	G	A	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr11	77838373	rs59662312	TA	T	534.94	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:4,32:0.89:36
chr11	77850517	rs10793289	C	A	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.354;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:362,80:0.18:442
chr11	77884782	rs230661	C	T	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	77920457	rs2256051	G	A	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	77920563	rs2510045	G	T	11229.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr11	77920808	rs75766028	GC	AA	2730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=1.428;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-0.341;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:377,97:0.20:474
chr11	77920863	rs2512527	C	A	10657.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr11	77920930	rs2511188	A	G	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.68;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	77921348	rs75370284	G	A	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.666;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:439,103:0.19:542
chr11	77921527	rs2512526	G	C	15371.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:1,554:1.00:555
chr11	77924544	rs2450139	G	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	77924607	rs901105	A	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr11	77924656	rs72075084	TTCTAAG	T	6366.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	77924870	rs2450138	C	T	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	77930345	rs2450122	T	C	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	77930499	rs901104	G	A	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	77931346	rs901103	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	77936064	rs1385601	A	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	77936166	rs1385600	A	G	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	77937800	rs2248407	G	A	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	78128775	rs11237488	C	T	5621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.86;ReadPosRankSum=0.300;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:35,248:0.88:283
chr11	78128797	rs881338	C	T	8612.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	78180179	rs11237514	A	G	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	78180507	rs10899517	AA	TC	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	78189558	rs4944202	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	78277157	rs140866681	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.658;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=5.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.903;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:81,20:0.20:101
chr11	78383336	rs111604043	G	A	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:20,144:0.88:164
chr11	78437182	rs689369	G	A	8796.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	78440736	rs512004	G	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	78489793	rs1573527	C	A	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	78489798	rs1573528	C	A	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=2.045;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	78516320	.	T	TCTCCCCACCCTCCACACCCCACCCCTCATTCTTCCCCACCCCCACTCCTCCTCCACCCACCCTTC	1143.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=190.62;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	78565314	rs17137261	C	G	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:23,85:0.79:108
chr11	78567367	rs505093	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	81601884	rs11603185	A	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.548;QD=3.06;ReadPosRankSum=0.216;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:173,54:0.24:227
chr11	82444216	rs986097	C	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=1.576;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:114,17:0.13:131
chr11	82444226	rs986096	C	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.749;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:109,16:0.13:125
chr11	82560312	rs10792653	T	G	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	82560858	rs10736757	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	82561151	rs33954574	G	GAA	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;MQ=61.34;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr11	82561156	rs57878596	A	AAT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=-0.774;QD=3.25;ReadPosRankSum=1.111;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr11	82561339	rs13306597	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr11	82561661	rs10792655	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	82564294	rs2229437	T	G	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	82595975	rs6592087	T	A	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	82641001	rs2127363	C	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	82641157	rs2170009	A	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	82641364	rs10431162	G	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr11	82643760	rs7947780	G	T	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	82644904	rs7130899	G	A	11228.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr11	82704967	rs3793986	CA	AT	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	82952108	rs625102	T	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	82959338	rs71463157	TACAC	T	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.86;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	82967023	rs565276	A	G	1387.03	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:6,53:0.90:59
chr11	82968164	rs628223	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	82968418	rs657824	G	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.56;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	82973004	rs8789	C	T	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:19,95:0.83:114
chr11	82973045	rs645954	C	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	82984985	rs543562	T	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.254;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:84,19:0.18:103
chr11	82985161	rs34416960	GA	G	398.37	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr11	82985959	rs573871	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	82996986	rs494791	A	C	10367.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	83180169	rs11464149	C	CA	1044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.080;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.326;QD=9.01;ReadPosRankSum=0.244;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:40,76:0.66:116
chr11	83183676	rs2888834	T	C	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:29,134:0.82:163
chr11	83197206	rs144203408	A	ATGAT	2880.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:7,69:0.91:76
chr11	83197307	rs141813606	GA	G	935.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:10,48:0.83:58
chr11	83197394	rs61265208	C	CA	124.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.28;ReadPosRankSum=0.660;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	83585289	rs144508115	G	GGGAAGGAAGGAAGGAGAGAGGGAA	858.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.31;MQRankSum=1.008;QD=53.63;ReadPosRankSum=0.956;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:1,15:0.94:16
chr11	83810113	rs3750917	T	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	83878075	rs1869472	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	83962251	rs7933566	A	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	84027768	rs1515083	C	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:11,53:0.83:64
chr11	84245584	rs17734921	T	C	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:14,103:0.88:117
chr11	84822798	rs601375	T	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	85339542	rs575050	G	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-1.224;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr11	85418591	rs3069561	AACAG	A	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.711;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:104,13:0.11:117
chr11	85436352	rs641393	G	A	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.986;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:182,43:0.19:225
chr11	85436394	rs556669	T	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.896;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:126,29:0.19:155
chr11	85436500	rs580459	T	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.062;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:99,17:0.15:116
chr11	85436699	rs598346	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.345;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:280,46:0.14:326
chr11	85436868	rs597480	G	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=1.020;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:204,52:0.20:256
chr11	85437896	rs491867	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.914;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:316,49:0.13:365
chr11	85456703	rs647912	T	C	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.070;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:84,18:0.18:102
chr11	85576113	rs11389838	C	CT	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.872;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:109,24:0.18:133
chr11	85576127	rs36093844	C	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.993;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.170;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:147,32:0.18:179
chr11	85584151	rs142446208	G	GT	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr11	85593529	rs17817308	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-1.440;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr11	85609806	rs10501601	A	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.692;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr11	85610109	rs725459	G	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.503;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chr11	85627039	rs3213934	A	G	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:11,103:0.90:114
chr11	85630411	rs12805520	C	T	4011.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:33,170:0.84:203
chr11	85671702	rs618679	A	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	85685285	rs17817648	T	C	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:6,37:0.86:43
chr11	85685574	rs4944550	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.585;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chr11	85692061	rs17817690	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.608;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.451;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr11	85692181	rs76719109	A	C	4550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=1.362;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:65,208:0.76:273
chr11	85692342	rs2508688	A	C	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	85714288	rs7951988	T	C	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	85725937	rs592297	C	T	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	85966177	rs7950735	G	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	85967709	rs10792842	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr11	85968623	rs974144	C	T	1585.90	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:8,66:0.89:74
chr11	85975481	rs35685239	A	ATATT	443.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=60.57;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	85977117	rs10898460	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	85979636	rs72285136	CGT	C,CGTGTGTGTGT	921.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=72;set=Intersection	GT:AF:DP	1/2:0.81,0.17:36
chr11	86017658	rs291247	A	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr11	86037696	rs12295985	T	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr11	86037733	rs11419370	G	GC	777.25	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,22:0.92:24
chr11	86098680	rs292109	T	C	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:20,91:0.82:111
chr11	86111700	rs12272824	A	T	1450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=0.938;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:16,63:0.80:79
chr11	86119396	rs4412777	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr11	86123467	rs3741006	G	A	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:14,147:0.91:161
chr11	86133784	rs1056194	C	T	4584.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:30,196:0.87:226
chr11	86153911	rs7548	G	A	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:15,92:0.86:107
chr11	86157998	rs4944580	T	C	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr11	86161147	rs4944581	A	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:4,73:0.95:77
chr11	86161388	rs1042780	C	G	6254.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:45,265:0.85:310
chr11	86175193	rs11234662	A	G	4493.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:37,192:0.84:229
chr11	86175300	rs605251	G	A	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	86198335	rs669325	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.658;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:78,14:0.15:92
chr11	86198529	.	G	GT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=2.080;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr11	86198596	rs2279048	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr11	86208897	rs609848	A	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	86267678	rs4943943	G	A	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:29,231:0.89:260
chr11	86270684	rs34249558	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	86519925	rs35433370	CGTGT	C	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=0.455;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr11	86650282	rs4631906	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	86782716	rs5793233	AT	A	1445.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:23,84:0.79:107
chr11	86782728	rs2513239	T	G	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:14,93:0.87:107
chr11	86868347	rs556139	C	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:6,62:0.91:68
chr11	86868361	rs59532014	GT	G	933.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:13,58:0.82:71
chr11	86947577	rs117634648	T	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr11	87006776	rs10792935	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr11	87007008	rs10792936	A	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	87013252	rs2276103	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr11	87013438	rs2276102	G	A	5108.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:40,217:0.84:257
chr11	87032162	rs139466681	CATAAG	C	1266.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr11	87032215	rs7112344	T	C	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	87846757	rs9144	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.676;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr11	87847018	rs3740925	C	T	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	87847063	rs1027027	C	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-1.201;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr11	87908448	rs302646	A	G	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	87908563	rs3812730	G	A	4829.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:21,197:0.90:218
chr11	88033661	rs217116	A	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	88045583	rs217086	A	G	7012.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	88045815	rs5793312	C	CT	717.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	88059683	rs217060	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=5.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.102;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:35,5:0.12:40
chr11	88061405	rs580743	A	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.377;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:112,25:0.18:137
chr11	88070563	rs580808	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr11	88070858	rs11019400	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:20,98:0.83:118
chr11	88070914	rs11600158	A	G	1611.41	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:9,68:0.88:77
chr11	88242024	rs2941563	T	G	7255.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	88245413	rs308882	G	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.668;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:121,26:0.18:147
chr11	88245424	rs144972069	CATGGCCA	C	658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.285;QD=3.97;ReadPosRankSum=0.725;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:139,27:0.16:166
chr11	88338165	rs3816649	G	A	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	88645129	rs626218	T	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	88911696	rs1042602	C	A	7200.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:61,302:0.83:363
chr11	88925242	rs10765196	G	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-1.511;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:58,11:0.16:69
chr11	89070705	rs3737449	T	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=-0.563;QD=1.84;ReadPosRankSum=0.617;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr11	89088168	rs75735530	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=5.891;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=-0.884;QD=0.31;ReadPosRankSum=1.154;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:221,32:0.13:253
chr11	89133449	rs317139	C	T	11278.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr11	89221958	rs597046	G	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	89223616	rs490934	C	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	89223931	rs2304500	G	A	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	89224101	rs3816123	G	T	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	89224131	rs34495256	T	TCTC	7731.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	89224229	rs35177439	G	GT	5746.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	89224326	rs10830279	G	A	6620.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	89224453	rs2289125	A	C	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	89403414	rs10734120	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	89424740	.	G	GTATA	257.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DP=43;ExcessHet=3.0103;FS=4.260;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=32.24;ReadPosRankSum=0.887;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr11	89531801	.	CA	C	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=52.63;MQRankSum=-6.387;QD=1.24;ReadPosRankSum=-1.303;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:150,48:0.24:198
chr11	89774197	rs200350663	CT	C	1110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.54;MQRankSum=-4.788;QD=9.83;ReadPosRankSum=1.862;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:33,80:0.71:113
chr11	89868582	rs7125969	A	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr11	89868594	rs7129238	T	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.724;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.505;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:24,4:0.14:28
chr11	89868755	rs10734123	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.627;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:154,26:0.14:180
chr11	89880469	rs2186748	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.025;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:87,18:0.17:105
chr11	89896640	rs76007178	A	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-2.647;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:178,29:0.14:207
chr11	89903334	rs3758754	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.921;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:112,22:0.16:134
chr11	89903405	rs3758755	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.193;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr11	89909096	.	A	ATG	616.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr11	89916053	rs9804494	C	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=6.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.268;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr11	89916080	rs9804632	G	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=6.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=1.694;SOR=0.282;set=HC	GT:AD:AF:DP	0/1:135,24:0.15:159
chr11	89935586	rs1045861	G	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	89936093	rs3758757	T	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:19,70:0.79:89
chr11	89936706	rs80331402	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.725;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr11	89938615	rs36109540	AAG	A	845.79	.	AC=1;AF=0.500;AN=2;DB;DP=25;MQ=60.86;set=Intersection	GT:AD:AF:DP	0/1:2,22:0.92:24
chr11	89939448	rs1943381	G	A	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	89939569	rs723715	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,43:0.83:52
chr11	89939892	.	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.218;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr11	89943548	rs3832739	T	TCAGA	2256.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	89946502	rs199835809	CAAA	C	1476.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.686;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.521;QD=28.96;ReadPosRankSum=-0.516;SOR=0.109;set=HC	GT:AD:AF:DP	1/1:5,46:0.90:51
chr11	89951367	rs34787918	GA	G	1029.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-1.522;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:25,66:0.73:91
chr11	89951510	rs10830446	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	90602241	rs2105799	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.365;QD=0.32;ReadPosRankSum=-1.085;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:180,26:0.13:206
chr11	91545212	rs4753345	C	G	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	92257703	rs561408	T	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.418;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr11	92497990	rs3847524	C	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	92531356	rs7949157	A	G	10671.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr11	92532677	rs12362722	T	C	10612.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	92534442	rs3847531	A	G	13337.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:1,502:1.00:503
chr11	92538405	rs62622785	C	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.158;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:88,20:0.19:108
chr11	92539384	rs4753415	A	G	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	92564767	rs6483189	T	G	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	92570812	rs11020075	TC	AA	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.191;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=1.007;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr11	92573911	rs10765565	G	T	1588.98	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:9,64:0.88:73
chr11	92590448	rs4753069	A	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	92592536	rs35216054	GT	G	1879.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:15,75:0.83:90
chr11	92599851	rs3847553	G	A	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	92615756	rs77951320	C	G	1444.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.64;ReadPosRankSum=0.080;SOR=0.455;set=HC	GT:AD:AF:DP	1/1:4,66:0.94:70
chr11	92620160	rs12421052	A	T	1916.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=6.263;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.29;ReadPosRankSum=-0.975;SOR=0.145;set=HC	GT:AD:AF:DP	1/1:7,79:0.92:86
chr11	92623608	rs7118363	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	92623877	rs12277422	G	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.985;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:233,41:0.15:274
chr11	92718127	rs1447350	G	C	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	92718163	rs1447351	A	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	92914765	rs61920515	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	93118515	rs3020057	G	A	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	93122446	rs3020056	TC	AA	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	93141580	rs2259633	C	A	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	93170909	rs375443728	T	TC	556.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chr11	93170925	rs2605584	G	A	501.96	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr11	93400052	rs7123801	G	A	72.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	93402096	rs1944101	C	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	93403067	rs1954994	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	93408831	rs10831088	G	A	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	93408958	rs35646565	C	CA	786.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	93412774	rs1944100	A	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	93425159	rs4753495	C	A	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	93454524	rs17651231	T	C	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.319;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:175,32:0.15:207
chr11	93454831	.	GGTGTGT	G,GGT	851.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.39;ReadPosRankSum=-0.926;SOR=1.453;set=HC	GT:AD:AF:DP	1/2:3,16,11:0.53,0.37:30
chr11	93462607	rs7131178	A	T	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:8,50:0.86:58
chr11	93463145	rs200136546	A	AT	1149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.417;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:33,86:0.72:119
chr11	93463332	rs7101779	A	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	93463666	rs7119918	C	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	93464175	rs1944108	A	C	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:43,153:0.78:196
chr11	93464770	rs74697786	G	A	2562.78	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:15,112:0.88:127
chr11	93466866	rs2155248	G	T	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr11	93474570	rs11280945	T	TGCGTGA	28929.73	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr11	93474678	rs630648	G	C	10922.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr11	93474791	rs623510	G	T	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	93474827	rs631116	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	93480708	rs624856	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	93480717	rs5793654	A	ATATCTTACT	767.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	93487008	rs623993	G	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	93490682	rs604414	T	A	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	93494878	rs72097212	AAG	A	3910.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	93517874	rs7116967	C	G	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	93517886	rs2848477	G	C	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	93521405	rs676586	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	93527219	rs657177	T	C	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	93527282	rs5793656	GA	G	2463.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	93534929	.	T	TGA	817.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	93534930	.	TTC	GAT	430	.	AC=2;AF=1.00;AN=2;BRF=0.1;FR=1.0000;HP=3;HapScore=2;MGOF=9;MMLQ=28;MQ=60.0;NF=15;NR=2;PP=430;QD=29.0275220507;SC=TCATAAAATTTTCGAATCATT;SbPval=0.57;Source=Platypus;TC=18;TCF=16;TCR=2;TR=17;WE=93534940;WS=93534920;set=Platypus	GT:AD:AF:DP	1/1:1,17:0.94:18
chr11	93534930	.	TTC	T	817.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	93534990	rs655699	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	93754508	rs2511403	G	A	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	93797619	rs1945783	A	G	6589.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	93801012	rs10765650	C	T	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:12,61:0.84:73
chr11	93801062	rs10765651	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr11	93803717	rs1878799	C	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	93806416	rs1914725	T	C	7217.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	93806705	rs2949862	C	T	924.89	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:3,31:0.91:34
chr11	93913458	rs3020015	T	C	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	94203868	rs610611	A	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.490;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:166,46:0.22:212
chr11	94212048	rs535801	C	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-2.822;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:97,24:0.20:121
chr11	94212154	rs680695	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=0.243;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr11	94223855	rs608452	A	G	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	94231257	rs2509943	C	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:6,47:0.89:53
chr11	94245740	rs2509324	A	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=0.110;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr11	94250684	rs582049	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr11	94250709	rs582077	T	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr11	94261255	rs647484	C	G	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:20,96:0.83:116
chr11	94264927	rs595672	T	A	3261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=1.004;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:29,142:0.83:171
chr11	94354019	rs504010	T	C	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:19,105:0.85:124
chr11	94474044	rs11300560	GT	G	4250.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	94501849	rs2915239	G	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	94602309	.	TA	T	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=3.692;QD=2.21;ReadPosRankSum=-2.251;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:103,40:0.28:143
chr11	94696474	rs58293261	G	GA	717.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=-0.039;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr11	94699391	.	TACACACACACAC	T,TAC	1306.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.43;SOR=1.418;set=HC	GT:AD:AF:DP	1/2:0,7,27:0.21,0.79:34
chr11	94699507	rs34805065	A	AT	2488.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	94703049	rs7107185	T	C	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	94704037	rs3737505	C	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	94704092	rs4753645	T	A	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=1.380;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	94704092	.	TAG	AAA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=3;HapScore=1;MGOF=9;MMLQ=26;MQ=60.0;NF=64;NR=33;PP=2947;QD=20;SC=TATTTTAGAATAGCATGGTAA;SbPval=0.51;Source=Platypus;TC=101;TCF=67;TCR=34;TR=97;WE=94704102;WS=94704082;set=Platypus	GT:AD:AF:DP	1/1:4,97:0.96:101
chr11	94704094	rs4753646	G	A	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.365;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	94704689	rs3831469	A	AAC	2414.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:14,80:0.85:94
chr11	94730403	rs11371511	C	CA	60.86	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr11	94731376	rs17617964	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.010;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:144,29:0.17:173
chr11	94759059	rs10752685	A	G	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.13;QD=27.59;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	94782539	rs620838	G	A	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	94800902	rs5793709	G	GC	29654.73	.	AC=2;AF=1.00;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	1/1:0,795:1.00:795
chr11	94823448	rs3016947	A	T	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	94862288	rs3740862	G	A	4727.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:36,196:0.84:232
chr11	94862577	rs3740861	G	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=3.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-1.378;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:291,40:0.12:331
chr11	94908658	rs11021065	G	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=1.915;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:217,32:0.13:249
chr11	95512060	rs1150360	A	G	7317.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:39,305:0.89:344
chr11	95519195	rs3748252	A	T	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:8,53:0.87:61
chr11	95519506	rs3748253	G	A	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:15,107:0.88:122
chr11	95520695	rs1313288	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:9,57:0.86:66
chr11	95520952	rs61902249	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr11	95521648	rs1727165	A	G	1504.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.13;ReadPosRankSum=-0.661;SOR=0.467;set=HC	GT:AD:AF:DP	1/1:6,62:0.91:68
chr11	95522468	rs61902252	G	A	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:15,68:0.82:83
chr11	95523810	rs1134795	A	G	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:25,103:0.80:128
chr11	95524067	rs12272061	G	T	1533.22	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:7,61:0.90:68
chr11	95527525	rs77122249	T	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr11	95528663	rs5793747	C	CT	1175.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.55;ReadPosRankSum=1.014;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:6,61:0.91:67
chr11	95528714	rs522536	C	T	1685.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.772;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.30;ReadPosRankSum=-1.034;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:8,75:0.90:83
chr11	95545955	rs79343957	CA	AC	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr11	95551136	rs666398	C	T	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:11,88:0.89:99
chr11	95555133	rs61903295	A	G	919.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.56;ReadPosRankSum=-1.328;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr11	95561202	.	G	GT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.105;QD=0.46;ReadPosRankSum=1.353;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr11	95561294	rs16922605	A	G	490.80	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=60.57;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr11	95569183	rs499637	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr11	95591872	rs11021336	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr11	95598629	rs687559	A	G	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:23,135:0.85:158
chr11	95712897	rs7123133	G	T	6365.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:67,267:0.80:334
chr11	95713024	rs7123272	G	A	7198.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:52,311:0.86:363
chr11	95713175	rs74393839	C	T	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr11	95825374	rs10557243	TTGCTGCTGCTGC	TTGC,T	5191.06	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=370;set=Intersection	GT:AF:DP	0/1:0.89:234
chr11	95825797	rs7931870	A	G	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:30,115:0.79:145
chr11	96092376	rs10765801	C	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	96106661	rs11021560	C	G	405.78	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr11	96123734	rs3842515	T	TG	691.74	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr11	96125435	rs10545425	CTT	C	710.84	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	99427091	rs2047166	A	G	306.79	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr11	99428929	rs11375374	C	CT	2027.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=23.58;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	99690212	rs12292548	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr11	99690286	rs10790978	T	G	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,73:0.46:158
chr11	99690376	rs12292659	C	T	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:239,121:0.34:360
chr11	99690428	rs7125822	T	G	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:195,109:0.36:304
chr11	99941322	rs2059014	C	T	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:22,73:0.77:95
chr11	100168289	rs1944178	C	T	9640.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	100168320	rs75986029	T	TC	19666.73	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr11	100169829	rs1944180	A	G	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	100641200	rs7944598	A	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr11	100730087	rs661237	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	100730213	rs646392	G	A	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	100804088	rs626529	A	G	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr11	100807130	rs581921	T	C	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	100811574	rs35159175	CAT	C	2482.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	100811690	rs661973	G	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	100812338	rs151209547	A	AAC	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	100812340	.	GAC	CAG	606	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=3;HapScore=1;MGOF=19;MMLQ=28;MQ=60.0;NF=11;NR=2;PP=606;QD=50.7282980663;SC=CTGATTCTAAGACACTCTACC;SbPval=0.57;Source=Platypus;TC=14;TCF=12;TCR=2;TR=13;WE=100812361;WS=100812330;set=Platypus	GT:AD:AF:DP	1/1:1,13:0.93:14
chr11	100812342	rs370937549	CACTCTACCCTAT	C	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	100812344	.	CTCTACCCTAT	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=60.0;NF=9;NR=2;PP=2965;QD=20;SC=TTCTAAGACACTCTACCCTAT;SbPval=0.61;Source=Platypus;TC=11;TCF=9;TCR=2;TR=11;WE=100812361;WS=100812330;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	100814409	rs619066	G	A	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	100814570	rs543146	A	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:8,54:0.87:62
chr11	100814609	rs618155	G	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	100819305	rs633967	T	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	100819392	rs504081	A	G	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	100819430	rs482050	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	100819447	rs481991	C	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	100820725	rs694556	A	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	100827326	rs151243237	AAATAT	A	12618.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	100830440	rs7950832	T	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.264;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:109,20:0.16:129
chr11	100830579	rs6590829	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.346;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:239,42:0.15:281
chr11	100830693	rs563460	T	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	100833051	rs76720568	A	G	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.978;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.47;ReadPosRankSum=-1.406;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:4,38:0.90:42
chr11	100833059	rs540866	A	G	1635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.80;ReadPosRankSum=-1.423;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:4,43:0.91:47
chr11	100909809	rs484389	A	G	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	100909991	rs500760	T	C	6466.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	100921665	rs645213	C	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	100922202	rs1042839	G	A	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=0.895;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:18,60:0.77:78
chr11	100922404	rs578029	A	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	100933412	rs1042838	C	A	3960.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:28,156:0.85:184
chr11	100933598	rs11571221	G	GAATGA	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	100998076	rs3740752	T	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	100998623	rs1379130	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr11	100998771	rs3740753	C	G	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:35,133:0.79:168
chr11	100999245	rs11571145	G	A	6612.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:38,258:0.87:296
chr11	100999838	rs11437764	A	AG	1560.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	101771248	rs3858418	G	A	9478.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr11	101771381	rs3858419	G	A	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:10,53:0.84:63
chr11	101775663	rs1661409	G	A	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:13,79:0.86:92
chr11	101778710	rs1661410	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr11	101818728	rs11225080	A	G	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:29,110:0.79:139
chr11	101826949	rs930469	T	C	16983.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:151,729:0.83:880
chr11	101832478	rs7926728	G	T	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	101833644	rs7109233	C	T	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	101848990	rs3740931	A	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr11	101857758	rs6590942	G	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.41;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	101863706	rs1274901	C	T	580.78	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr11	101868415	rs1783742	C	T	4358.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:60,178:0.75:238
chr11	101918327	rs12804542	A	G	4647.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	101918686	rs7934495	A	C	1899.78	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:10,84:0.89:94
chr11	101929900	rs10750626	T	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	101984718	rs2033082	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	102080325	rs35731181	GA	G	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.376;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.016;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr11	102199606	rs377045033	TA	T	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.616;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr11	102199611	rs10895289	A	T	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=1.419;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr11	102207851	rs1055088	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-1.324;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr11	102269738	rs75055689	G	T	373.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	102269743	rs12269847	G	C	373.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	102272277	rs12275185	G	T	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=7.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.15;ReadPosRankSum=0.478;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:27,82:0.75:109
chr11	102272460	rs139978855	AT	A	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.556;QD=12.05;ReadPosRankSum=0.071;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:9,42:0.82:51
chr11	102272839	rs11547915	C	A	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:47,188:0.80:235
chr11	102323160	rs2436036	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.963;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:168,26:0.13:194
chr11	102323377	rs10895296	A	G	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:20,190:0.90:210
chr11	102391425	rs14983	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:11,70:0.86:81
chr11	102398433	rs3216144	C	CT	13315.73	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:69,321:0.82:390
chr11	102398436	rs78978042	C	T	13298.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:69,328:0.83:397
chr11	102398593	rs10502001	C	T	9432.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:36,386:0.91:422
chr11	102398729	rs17881703	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:10,64:0.86:74
chr11	102449650	rs7934921	T	A	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:5,65:0.93:70
chr11	102449951	rs1940054	A	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	102465502	rs11306430	CA	C	226.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;QD=15.12;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	102477395	rs1784423	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-1.031;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:106,18:0.15:124
chr11	102482738	rs1711416	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.399;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr11	102495998	rs2245803	T	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.540;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr11	102562700	rs2509010	C	T	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	102563739	rs1276289	C	T	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	102565856	rs10895351	A	T	1039.81	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:4,41:0.91:45
chr11	102567207	rs1276286	T	A	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	102567626	rs1940480	C	G	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	102573396	rs2701994	C	G	1205.80	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:6,45:0.88:51
chr11	102573569	rs3809018	C	A	5875.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:50,240:0.83:290
chr11	102573912	rs61893941	C	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:15,67:0.82:82
chr11	102576375	rs1939015	G	A	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:37,106:0.74:143
chr11	102576468	rs11225389	C	A	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:30,167:0.85:197
chr11	102584023	rs1939018	T	A	7845.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:57,334:0.85:391
chr11	102585493	.	TTATATA	T	287.74	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.97;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	102587154	rs58281905	G	GA	55.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.253;QD=5.54;ReadPosRankSum=0.728;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	102591994	rs1892886	A	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr11	102592049	rs72369292	TTGTG	T	3130.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:18,82:0.82:100
chr11	102594427	rs6590984	T	C	2771.80	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:11,108:0.91:119
chr11	102595413	rs11225394	C	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr11	102595666	rs2155052	C	G	2510.78	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:15,102:0.87:117
chr11	102623115	rs531335	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr11	102641452	rs470171	G	C	4268.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:49,171:0.78:220
chr11	102642716	rs17860997	A	AT	4293.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	102647310	rs470154	T	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	102649543	rs470277	T	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	102650246	rs17860949	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-1.373;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:271,36:0.12:307
chr11	102650424	rs486055	C	T	5708.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:42,235:0.85:277
chr11	102661099	rs470215	T	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr11	102661595	rs470747	A	G	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:18,128:0.88:146
chr11	102663476	rs17884110	A	AG	7794.73	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:26,192:0.88:218
chr11	102663482	rs1144391	A	T	7627.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:26,185:0.88:211
chr11	102666043	rs491152	A	G	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	102666316	rs470558	T	C	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	102668603	rs5794198	CA	C	764.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.375;QD=16.99;ReadPosRankSum=1.539;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr11	102668702	rs470358	T	C	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:13,72:0.85:85
chr11	102735103	rs476185	A	G	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:17,90:0.84:107
chr11	102737192	rs28381684	A	T	5399.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:38,230:0.86:268
chr11	102737276	rs28381683	CTTTCCAT	C	4500.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:24,111:0.82:135
chr11	102738075	rs17368582	T	C	5805.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:48,255:0.84:303
chr11	102738793	rs5794199	G	GT	7814.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	102738795	rs5003690	G	T	7823.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	102742761	rs17368659	G	T	1513.78	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:6,53:0.90:59
chr11	102745469	rs28360358	GCAAA	G	1764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.524;QD=32.68;ReadPosRankSum=0.960;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:10,44:0.81:54
chr11	102745791	rs2276109	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr11	102815970	rs61571704	CA	C	30.71	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.14;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	102824826	rs478927	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.014;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.090;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr11	102980324	rs17301028	C	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.155;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:137,29:0.17:166
chr11	102996095	rs11307059	CT	C	113	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.53;ReadPosRankSum=1.173;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr11	103004929	rs2450918	C	G	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	103013954	rs2514006	G	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	103019443	rs2514000	C	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	103022842	rs10664799	G	GT	384.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=0.652;SOR=0.407;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr11	103025071	rs72175476	AGT	A	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	103026040	rs5794210	CT	C	440.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.510;QD=13.36;ReadPosRankSum=-0.263;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr11	103029373	rs688094	G	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	103029516	rs688906	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	103033914	rs657936	A	T	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	103047007	rs585692	C	A	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	103050028	rs632672	A	G	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	103057048	rs658804	A	G	8114.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	103058126	rs586592	C	T	10976.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr11	103060309	rs617059	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	103074349	rs631712	C	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	103074639	rs613978	C	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	103082590	rs589623	G	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	103086381	rs679691	G	T	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	103086399	rs78873690	G	GTA	2266.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	103086725	rs635193	C	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	103091237	rs636510	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	103091546	rs670464	G	A	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	103092945	rs654061	A	G	318.78	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	103092968	rs669940	C	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	103101868	rs667819	G	C	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	103104930	rs1784259	C	A	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	103153788	rs117178504	C	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.484;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:75,15:0.17:90
chr11	103173782	rs11225673	A	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr11	103173793	rs4754906	A	C	1065.78	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:7,43:0.86:50
chr11	103174000	rs11225674	C	T	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:17,109:0.87:126
chr11	103175289	rs11392425	G	GT	1225.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:11,54:0.83:65
chr11	103175465	rs10690307	T	TGTG	2572.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:12,64:0.84:76
chr11	103175497	rs3758862	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:7,43:0.86:50
chr11	103178339	rs7118015	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr11	103182774	rs79978663	C	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	103187205	rs7103282	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr11	103191672	rs4754913	G	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	103192039	rs313407	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	103229027	rs2566913	T	C	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	103229110	rs2671333	G	A	9534.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	103229173	rs2514408	A	C	7401.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	103229188	rs2512128	G	C	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	103229238	rs2512129	G	A	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	103780455	rs10791649	A	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	103780610	rs4754997	C	T	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	103780695	rs4754998	G	A	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	103870755	rs11226108	G	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.835;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr11	103871109	rs3824936	T	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	103908735	rs1052313	G	A	4002.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:34,174:0.84:208
chr11	104757836	rs5794352	T	TA	327.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	104758035	rs484438	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	104761013	rs635846	T	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	104761100	rs513131	T	C	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	104761206	rs647039	C	T	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	104761271	rs693506	A	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	104762228	rs544216	G	A	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	104763117	rs497116	G	A	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	104763716	rs617983	A	G	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	104768000	rs693001	G	A	12932.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr11	104768098	rs555367	T	C	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	104768909	rs650940	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	104769032	rs181033425	A	G	3492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.91;ReadPosRankSum=-0.292;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:23,144:0.86:167
chr11	104819327	rs9507	T	C	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	104819542	rs5794358	G	GAAAC,GAAACAGAC	1790.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	1/1:1.00:42
chr11	104819544	.	GAG	CAC	1112	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.61;NF=6;NR=25;PP=1112;QD=37.5957378988;SC=CACACAGAGAGAGACACACAC;SbPval=0.54;Source=Platypus;TC=37;TCF=7;TCR=30;TR=31;WE=104819554;WS=104819530;set=Platypus	GT:AD:AF:DP	1/1:6,31:0.84:37
chr11	104819544	rs33955446	G	GAC,GACAC	1783.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.91;QD=63.70;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:0,8,20:0.29,0.71:28
chr11	104819546	rs5004914	G	C	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.87;QD=45.09;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	104820163	rs649739	A	C	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	104839222	rs658560	A	G	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr11	104866461	rs540819	A	T	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	104869708	rs523104	G	C	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	104872981	rs544211	C	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	104896375	rs2509648	G	T	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	105481597	.	CTT	C	287.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=8.451;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.18;ReadPosRankSum=2.295;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr11	105782501	rs60005308	A	AAT	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.063;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr11	105836923	rs632549	G	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	105842916	rs559190	C	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	105844923	rs509512	C	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	105961485	.	C	T	298.77	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	106407855	.	A	AATATATATAT,AATAT	328.77	.	AC=1,0;AF=0.500,0.00;AN=2;DP=22;set=Intersection	GT:AF:DP	0/1:0.71:14
chr11	106579204	rs12420232	C	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	106680653	rs141065153	CAATTT	C	2045.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	106695514	.	AT	A	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=4.883;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-7.624;QD=0.52;ReadPosRankSum=1.831;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:106,27:0.20:133
chr11	106695697	rs77535954	A	G	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	106807443	.	ATT	A,AT	1935.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=162;set=Intersection	GT:AF:DP	1/2:0.19,0.67:144
chr11	106849520	rs10890630	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.394;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr11	106888608	rs3107973	G	A	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:16,72:0.82:88
chr11	107197536	rs630782	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	107197606	rs630693	G	C	2684.10	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:12,103:0.90:115
chr11	107216388	rs474364	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.83;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	107286893	rs11439588	T	TG	2291.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	107287139	rs520729	T	A	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	107312175	rs11212239	G	A	1162.78	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:6,49:0.89:55
chr11	107313608	rs144259680	G	GAGGAAGGA,GAGGGAAGA	2403.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=7.491;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.16;MQRankSum=1.029;QD=44.51;ReadPosRankSum=1.834;SOR=4.575;set=HC	GT:AD:AF:DP	1/2:2,9,43:0.17,0.80:54
chr11	107326340	rs618078	C	A	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:36,180:0.83:216
chr11	107328544	rs2276271	G	A	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:25,133:0.84:158
chr11	107381533	rs655009	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.512;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr11	107381765	rs654093	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.761;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.107;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:160,31:0.16:191
chr11	107402995	rs589788	A	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.297;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr11	107403202	rs5794554	TAG	T	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.772;SOR=1.488;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr11	107420530	rs645056	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.900;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:382,58:0.13:440
chr11	107462878	rs542650	A	C	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	107462977	rs5794560	G	GT	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	107578721	rs583362	C	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:10,63:0.86:73
chr11	107646894	rs34492014	C	CA	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.717;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr11	107646918	rs484427	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.393;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr11	107663631	rs148577551	TTTTCTTTC	T	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=0.813;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr11	107675566	rs495836	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-1.689;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:70,14:0.17:84
chr11	107677399	rs34066069	C	CA	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.273;QD=1.67;ReadPosRankSum=-1.032;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:308,60:0.16:368
chr11	107686741	rs371223301	TAC	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=5.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.751;SOR=2.271;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr11	107729205	rs11603925	C	G	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:3,44:0.94:47
chr11	107729561	rs3741065	T	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,27:0.84:32
chr11	107904646	rs10890800	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-1.705;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:181,33:0.15:214
chr11	107917087	rs7117111	A	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-1.737;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:118,23:0.16:141
chr11	107925327	rs3847562	C	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	107925557	rs2271853	T	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:8,54:0.87:62
chr11	107943260	rs113786799	TAGTG	T	1680.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:5,42:0.89:47
chr11	107968520	rs73000527	T	A	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:26,109:0.81:135
chr11	107969300	.	GTT	G	473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.60;ReadPosRankSum=-0.839;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr11	107974879	rs372523778	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	108004798	rs7931681	A	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.074;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.911;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr11	108004927	.	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=5.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.236;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr11	108006047	rs10890817	A	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.833;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:183,30:0.14:213
chr11	108012510	rs34420529	A	AAAGT	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	108043988	rs2070661	C	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr11	108044091	rs4144901	T	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.642;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:82,19:0.19:101
chr11	108057430	rs4753833	G	A	63.78	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	108058769	rs371572857	CT	C	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-2.087;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr11	108059000	rs3781869	T	C	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.23;ReadPosRankSum=1.538;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,34:0.72:47
chr11	108061379	rs659584	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	108064935	rs11212546	A	G	95.81	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	108068954	rs683312	T	C	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	108079315	rs34033921	T	TA	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=1.085;QD=14.05;ReadPosRankSum=0.431;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr11	108093208	rs228589	A	T	2127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.28;ReadPosRankSum=-0.121;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:12,88:0.88:100
chr11	108100105	rs11390378	G	GT	135.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.078;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	108114792	rs144709948	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=2.691;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:87,20:0.19:107
chr11	108121410	rs34325032	C	CT	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=1.298;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:32,32:0.50:64
chr11	108129657	rs672655	A	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr11	108137775	rs642496	T	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr11	108141955	.	C	CT	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.268;QD=3.82;ReadPosRankSum=-0.371;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:74,40:0.35:114
chr11	108143182	rs664677	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr11	108150207	rs1799757	CT	C	3484.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:12,106:0.90:118
chr11	108151707	rs3218681	T	TA	1040.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=0.587;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,50:0.81:62
chr11	108175462	rs1801516	G	A	4145.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:41,178:0.81:219
chr11	108183167	rs659243	A	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	108188266	.	A	AT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.849;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr11	108188379	.	T	C	223	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5002;HP=2;HapScore=2;MGOF=90;MMLQ=24;MQ=55.03;NF=0;NR=8;PP=223;QD=32.2214015684;SC=TATATATATATACACACACAC;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=8;WE=108188387;WS=108188369;set=Platypus	GT:AD:AF:DP	1/0:8,8:0.50:16
chr11	108195976	rs11366542	GT	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=1.055;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr11	108196712	rs3212322	CATT	C	871.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr11	108218196	rs227075	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	108224697	rs179108	G	A	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	108225483	rs664982	C	T	869.81	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr11	108225661	rs664143	A	G	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:16,74:0.82:90
chr11	108256837	rs113995	A	T	177.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr11	108345515	rs11374964	G	GA	1870.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:7,49:0.88:56
chr11	108352160	rs3901850	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	108361578	rs11212676	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:26,87:0.77:113
chr11	108380335	rs1943382	T	C	8966.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	108383676	rs10749920	A	G	4786.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:39,200:0.84:239
chr11	108384207	rs2846412	C	T	5295.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:40,216:0.84:256
chr11	108464209	rs2640738	T	C	3354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.360;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.459;QD=18.64;ReadPosRankSum=0.167;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:33,147:0.82:180
chr11	108535792	rs2306118	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr11	108546468	rs11212754	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.551;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr11	108549179	rs2306117	T	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.230;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chr11	108577646	rs61914000	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr11	108594237	rs11212765	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=8.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.511;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr11	108722851	rs10890899	C	G	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:22,62:0.74:84
chr11	109964007	rs7116424	A	G	2189.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.457;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.12;ReadPosRankSum=-1.136;SOR=0.398;set=HC	GT:AD:AF:DP	1/1:8,91:0.92:99
chr11	109964079	rs7116552	C	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	109964089	rs11395531	T	TG	1907.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	109964257	rs7116683	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.30;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	110023628	rs665013	C	T	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	110050628	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.240;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr11	110452999	rs2008772	C	A	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.51;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	110453009	rs4079590	G	A	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.29;SOR=2.352;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	110453250	rs4142632	C	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	110479839	rs71960440	AT	A	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=1.332;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:46,30:0.39:76
chr11	110697305	rs120434	C	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	110697444	rs120436	G	A	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	111152263	rs5794734	ACT	A	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-1.235;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:82,13:0.14:95
chr11	111156836	rs3087967	T	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.811;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:70,19:0.21:89
chr11	111179054	rs3087587	A	G	6373.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	111229470	rs12282082	T	C	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr11	111249785	rs11213863	C	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	111249819	rs10789825	A	G	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	111325007	rs61896868	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=4.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.341;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:121,23:0.16:144
chr11	111326284	rs7925584	T	C	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	111327213	rs11213913	G	A	7540.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	111338433	rs11603646	G	A	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:5,62:0.93:67
chr11	111368047	rs489078	G	T	4555.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.80;ReadPosRankSum=-0.569;SOR=0.258;set=HC	GT:AD:AF:DP	1/1:1,169:0.99:170
chr11	111383789	rs11606481	C	T	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=2.773;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:16,59:0.79:75
chr11	111383846	rs2187473	C	T	1054.78	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:7,45:0.87:52
chr11	111420364	rs634679	A	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	111422217	rs663763	C	T	1348.78	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:7,52:0.88:59
chr11	111487106	rs571462	C	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	111608216	rs61756429	T	A	7459.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:57,323:0.85:380
chr11	111623088	rs4936675	T	A	11596.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr11	111636627	rs643506	T	G	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	111637117	rs139691367	T	TCCCGCCCCGCGCCCAGGC	3502.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=47.98;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	111659476	rs2554996	C	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	111724133	rs10502151	C	T	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:19,170:0.90:189
chr11	111742145	rs10708475	CG	C	5531.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	111747427	rs634983	C	T	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr11	111749265	rs3802845	C	T	4908.10	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:26,211:0.89:237
chr11	111749349	rs611010	A	T	6030.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	111780104	rs68187136	TA	T	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.758;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr11	111784229	rs4252588	C	T	7129.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:49,292:0.86:341
chr11	111795085	rs7124407	C	G	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.13;ReadPosRankSum=2.676;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:10,44:0.81:54
chr11	111795148	rs7124433	C	G	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:11,63:0.85:74
chr11	111800488	rs5794769	A	AT	1530.50	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:14,84:0.86:98
chr11	111848361	rs11364849	AG	A	2491.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	111848531	rs10891303	C	T	1991.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.32;ReadPosRankSum=-1.117;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:11,87:0.89:98
chr11	111853106	rs11455434	G	GC	6049.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	111866442	rs3839945	GAC	G	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	111889635	rs650461	C	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr11	111889654	rs476581	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr11	111896324	rs2303436	C	T	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:35,212:0.86:247
chr11	111897050	rs1974426	A	T	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.484;QD=23.99;ReadPosRankSum=-1.771;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr11	111903995	rs478941	T	C	546.31	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr11	111908162	rs627441	T	C	4296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.21;ReadPosRankSum=0.043;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:46,190:0.81:236
chr11	111909819	rs6589260	C	A	577.94	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr11	111915765	rs11455845	C	CA	1025.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.474;QD=15.31;ReadPosRankSum=0.747;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:8,59:0.88:67
chr11	111916001	rs11335731	AG	A	3704.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	111916647	rs10891314	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr11	111930576	rs3882890	C	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr11	111933088	rs10891315	A	G	1269.53	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:6,50:0.89:56
chr11	111956989	rs14396	C	A	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	111957143	rs487201	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	111957819	rs7121782	G	T	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	111963860	rs592626	A	G	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	111978165	.	TA	T	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.814;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr11	112020916	rs549908	T	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.068;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr11	112025915	rs4988359	T	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr11	112040027	rs360712	A	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.777;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:140,31:0.18:171
chr11	112064431	rs7105056	T	C	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	112064524	.	C	T	4510.77	.	AC=1;AF=0.500;AN=2;DP=204;set=Intersection	GT:AD:AF:DP	0/1:26,177:0.87:203
chr11	112065434	rs10891338	T	C	8537.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	112071294	rs12420140	G	A	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:5,62:0.93:67
chr11	112071570	rs7948124	AA	TT	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	112087101	rs2676377	T	A	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	112088499	rs2217401	A	C	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	112123095	rs2564872	A	G	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	112130987	rs2518361	G	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	112832307	rs11381910	G	GA	8727.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	112832339	rs11284059	GC	G	9342.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	112832353	rs7105734	T	C	8905.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.14;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	112832358	rs6589347	T	C	8321.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	112832391	.	AT	A	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.350;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr11	112984037	rs1245087	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	113067854	rs973461	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.366;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=1.324;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr11	113073066	rs5794855	T	TTTTTG	4019.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=46.20;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	113103996	rs584427	T	G	1851.74	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:10,81:0.89:91
chr11	113113515	rs635596	G	A	8410.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr11	113186776	rs2236709	G	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	113186879	rs7130072	C	T	535.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.14;ReadPosRankSum=1.509;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,24:0.86:28
chr11	113194168	rs723077	A	C	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:11,58:0.84:69
chr11	113195595	rs948178	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr11	113200558	rs7928978	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.916;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:96,15:0.14:111
chr11	113200709	rs2303380	G	A	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	113209428	rs10891536	C	G	4755.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:44,206:0.82:250
chr11	113211329	rs2288159	G	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.886;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-1.403;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:141,22:0.13:163
chr11	113211370	rs10891537	T	G	4369.80	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:25,196:0.89:221
chr11	113212553	rs6589372	T	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.539;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:280,46:0.14:326
chr11	113230600	rs2276070	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.852;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.830;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr11	113230773	.	C	CTTGTTTTGTTTTGTTTTGTT	466.73	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	113233059	rs2298490	G	A	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	113234466	rs713233	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.556;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chr11	113234471	rs719803	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.669;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr11	113234679	rs719802	T	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	113235419	rs2298489	A	G	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	113239082	rs10891540	G	A	13986.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:136,617:0.82:753
chr11	113264272	rs17115439	T	C	4366.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:37,179:0.83:216
chr11	113264470	rs4938013	A	C	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:41,140:0.77:181
chr11	113264511	rs11214596	C	G	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:26,67:0.72:93
chr11	113265292	rs10891546	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr11	113265595	rs117599758	G	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.438;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:142,31:0.18:173
chr11	113266702	rs11214598	T	C	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:30,138:0.82:168
chr11	113268059	rs11604671	G	A	2030.78	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:11,91:0.89:102
chr11	113270015	rs4938016	G	C	7896.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:52,338:0.87:390
chr11	113270160	rs2734849	A	G	6976.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:55,302:0.85:357
chr11	113270374	rs2734848	C	T	5147.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:43,209:0.83:252
chr11	113271065	rs2734847	T	G	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-1.741;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr11	113281397	rs6276	C	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:7,40:0.85:47
chr11	113283459	rs6277	G	A	1715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.25;ReadPosRankSum=0.689;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:17,77:0.82:94
chr11	113283477	rs6275	A	G	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=-0.926;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:12,69:0.85:81
chr11	113285299	rs2511521	G	A	1582.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.789;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.38;ReadPosRankSum=0.358;SOR=1.882;set=HC	GT:AD:AF:DP	1/1:3,57:0.95:60
chr11	113294976	rs11608185	T	C	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr11	113294998	rs12808482	T	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr11	113560974	rs201379359	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.864;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:82,17:0.17:99
chr11	113561054	rs7110736	A	G	11439.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	113561057	rs7110738	A	G	11372.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	113563688	rs11604602	A	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	113566327	rs45503699	C	A	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	113569575	rs10891587	T	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	113569925	.	GTCTGTCTGTCTCTC	G	1157	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=4;HapScore=1;MGOF=35;MMLQ=15;MQ=63.91;NF=3;NR=12;PP=1157;QD=78.6666666667;SC=ACTCTCCTTTGTCTGTCTGTC;SbPval=0.55;Source=Platypus;TC=16;TCF=3;TCR=13;TR=15;WE=113569946;WS=113569915;set=Platypus	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	113569927	rs72103801	CTGTCTG	C	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.43;QD=39.03;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	113570208	rs73568808	C	T	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	113570405	rs4936280	T	C	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	113570490	rs3802856	T	C	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	113570852	rs3802854	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	113576932	rs7926267	A	G	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	113608164	.	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.382;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr11	113609854	rs4351850	T	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	113618470	rs2459977	T	A	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	113618968	rs2513584	G	C	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	113670052	rs2459971	T	A	8379.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	113678924	rs2513582	G	T	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	113679119	rs2465647	C	T	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	113680018	rs2513581	G	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	113706122	rs10789965	G	A	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	113802601	rs1176746	A	G	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.013;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:458,78:0.15:536
chr11	113803028	rs1176744	A	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=-0.160;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:225,30:0.12:255
chr11	113846006	rs1062613	T	C	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	113848184	rs4020460	G	GCT	4216.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	113848273	rs1985242	A	T	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	113856681	rs10160548	G	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:9,45:0.83:54
chr11	114057944	rs682155	A	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr11	114120999	rs670984	C	T	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	114273673	rs17547494	A	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=1.747;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr11	114284645	rs3897612	CA	AG	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.792;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.932;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr11	114284744	rs11214983	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.222;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.033;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:147,24:0.14:171
chr11	114310469	rs476200	T	C	600.90	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr11	114315188	rs540712	A	G	2358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.18;ReadPosRankSum=0.456;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:24,99:0.80:123
chr11	114316989	rs654531	C	A	606.89	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr11	114398627	rs35058533	CA	C	4171.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:39,224:0.85:263
chr11	114401247	rs7941796	A	G	5327.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:35,227:0.87:262
chr11	114401283	rs7941923	C	T	6530.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:45,255:0.85:300
chr11	114401611	rs7944960	A	G	11712.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:86,491:0.85:577
chr11	114421646	rs79339030	A	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr11	114421674	rs75026329	G	A	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.153;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=-0.756;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr11	114421683	rs79413019	G	A	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-1.390;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:56,42:0.43:98
chr11	114421698	rs75909356	A	G	1998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=-0.399;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:77,51:0.40:128
chr11	114421705	rs78231204	A	G	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.878;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:82,56:0.41:138
chr11	114421711	rs77069178	C	T	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=-0.709;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:85,58:0.41:143
chr11	114421713	rs112529011	GT	G	2289.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:86,60:0.41:146
chr11	114421721	rs78612878	G	A	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:93,62:0.40:155
chr11	114421747	rs78105386	G	A	3578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=-0.625;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:116,92:0.44:208
chr11	114421754	rs73016111	G	A	3665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=-0.388;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:122,100:0.45:222
chr11	114421768	rs75860289	A	T	4277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.11;ReadPosRankSum=0.893;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:139,111:0.44:250
chr11	114421769	rs76481835	C	G	4303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=0.924;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:140,112:0.44:252
chr11	114421773	rs74572030	A	G	4353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=0.996;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:144,117:0.45:261
chr11	114421789	rs113431368	A	AC	5058.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:155,131:0.46:286
chr11	114421799	rs79701489	C	T	5192.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:153,139:0.48:292
chr11	114421817	rs73568242	G	T	5132.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:167,160:0.49:327
chr11	114421857	rs78453693	T	C	7649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=4.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.31;ReadPosRankSum=-0.687;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:164,195:0.54:359
chr11	114421861	rs76118887	G	A	7665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=3.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.12;ReadPosRankSum=-0.950;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:163,200:0.55:363
chr11	114421895	rs78257939	G	A	4503.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:165,209:0.56:374
chr11	114421909	rs79082937	T	C	7938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=6.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.46;ReadPosRankSum=1.405;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:166,204:0.55:370
chr11	114421912	rs78658939	A	G	7867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=6.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.56;ReadPosRankSum=1.612;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:164,201:0.55:365
chr11	114421927	rs78842965	G	A	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:144,201:0.58:345
chr11	114421962	rs75409523	G	A	6239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.86;ReadPosRankSum=0.902;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:111,162:0.59:273
chr11	114421967	rs79109814	A	G	6089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.70;ReadPosRankSum=0.876;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:104,153:0.60:257
chr11	114422003	rs73568250	A	C	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:63,91:0.59:154
chr11	114422016	rs76270589	T	A	2812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.15;ReadPosRankSum=0.746;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:53,74:0.58:127
chr11	114422025	rs75158214	C	A	2761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.583;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.66;ReadPosRankSum=-0.892;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:43,69:0.62:112
chr11	114422029	rs78778953	T	G	2700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.395;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=-0.753;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:42,65:0.61:107
chr11	114422036	rs77481744	C	T	2451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.02;ReadPosRankSum=-0.728;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:40,58:0.59:98
chr11	114422052	rs10790022	G	C	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:7,56:0.89:63
chr11	114422068	rs76698432	C	T	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.384;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=8.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.51;ReadPosRankSum=-0.954;SOR=2.675;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr11	114422068	.	CTA	TTC	1160	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=1;HapScore=2;MGOF=129;MMLQ=28;MQ=60.0;NF=0;NR=21;PP=1160;QD=57.7841845172;SC=TTTCCCTCTGCTAACTAACAA;SbPval=1.0;Source=Platypus;TC=43;TCF=4;TCR=39;TR=21;WE=114422078;WS=114422058;set=Platypus	GT:AD:AF:DP	0/1:22,21:0.49:43
chr11	114422070	rs75429280	A	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.638;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=8.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.07;ReadPosRankSum=-0.970;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr11	114441595	rs1850521	G	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr11	114441936	rs12421748	A	G	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:30,155:0.84:185
chr11	114442103	rs550897	A	G	5345.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:39,223:0.85:262
chr11	114442265	rs481080	G	A	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:12,70:0.85:82
chr11	114465526	rs78608548	A	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	114550320	rs17550338	C	T	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	114550334	rs1612325	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	114569054	rs1712838	A	G	8183.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	114576626	rs1356428	A	T	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	115049180	rs17304149	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	115061533	rs4936322	T	C	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	115102224	rs11607928	A	G	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	116628401	rs2075295	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.882;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:91,15:0.14:106
chr11	116629734	rs67735092	T	TA	1194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.288;QD=10.86;ReadPosRankSum=1.299;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:34,76:0.69:110
chr11	116631391	rs3741301	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:4,57:0.93:61
chr11	116631690	rs3741300	G	A	1258.80	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:7,52:0.88:59
chr11	116631707	rs3825041	T	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	116636305	rs79874233	G	C	1122.89	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:6,49:0.89:55
chr11	116640768	rs1269325	G	A	2229.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.79;ReadPosRankSum=0.224;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:3,65:0.96:68
chr11	116641028	rs1263151	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr11	116652728	rs372842114	CA	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.805;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr11	116654435	rs603446	C	T	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:25,104:0.81:129
chr11	116661826	rs2072560	T	C	10477.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	116662579	rs651821	C	T	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	116692334	rs5104	C	T	10454.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	116692694	rs5100	G	A	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	116693464	rs5092	C	T	7124.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	116701153	rs2070668	T	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:5,33:0.87:38
chr11	116701535	rs4520	T	C	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	116703640	rs5128	G	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	116703671	rs4225	G	T	924.78	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,34:0.89:38
chr11	116707684	rs2070665	A	G	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	116708020	rs5070	A	G	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:27,168:0.86:195
chr11	116720089	rs2289893	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr11	116732512	rs2075292	G	T	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	116732856	rs484646	A	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr11	116734545	rs11216164	G	A	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:31,125:0.80:156
chr11	116747282	rs17120119	C	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.712;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr11	116824620	rs2289890	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=10.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.358;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:108,17:0.14:125
chr11	116824884	rs511676	T	G	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr11	117008345	rs3216785	G	GT	426.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	117008429	.	G	A	111.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.86;QD=27.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	117015195	rs2735183	C	T	393.18	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr11	117030581	rs1871757	T	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	117030624	rs35139041	AT	A	1132.74	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:7,65:0.90:72
chr11	117032125	rs3736120	G	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr11	117034388	rs3057863	CAAAAAA	C	2097.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:12,65:0.84:77
chr11	117034619	rs7122944	G	T	8183.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	117034729	rs10790175	T	C	1890.56	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:7,68:0.91:75
chr11	117042238	rs10750103	C	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:6,43:0.88:49
chr11	117042377	rs4936367	G	A	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	117052069	rs35248926	GTCTCT	G	5073.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	117053165	rs7946257	A	G	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:13,92:0.88:105
chr11	117053433	rs2046150	C	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.858;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:208,32:0.13:240
chr11	117054370	rs34033077	C	CT	41.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:38,8:0.17:46
chr11	117054709	rs2046149	C	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=9.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.620;SOR=1.497;set=HC	GT:AD:AF:DP	0/1:152,24:0.14:176
chr11	117057816	.	T	C	1729.77	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:16,67:0.81:83
chr11	117058062	rs2306472	C	T	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.407;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:270,68:0.20:338
chr11	117059347	rs90192	C	T	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	117059552	rs474339	G	A	7198.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:68,315:0.82:383
chr11	117059794	rs7933134	G	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.987;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:72,12:0.14:84
chr11	117062489	rs3213459	T	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.634;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.503;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:137,23:0.14:160
chr11	117064693	rs521171	C	G	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:40,148:0.79:188
chr11	117064776	rs11605883	C	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.038;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr11	117074109	rs12970	G	A	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.831;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.009;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:271,53:0.16:324
chr11	117074299	rs2269397	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.362;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=10.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.743;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	117076708	rs35186251	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=4.43;ReadPosRankSum=-0.560;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	117077034	rs28590104	A	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.035;QD=3.16;ReadPosRankSum=-0.474;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:108,34:0.24:142
chr11	117078338	rs199953984	A	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr11	117078378	rs2269396	C	T	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:116,93:0.44:209
chr11	117078604	rs192640086	C	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.89;MQRankSum=-3.089;QD=10.21;ReadPosRankSum=0.456;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr11	117096652	rs2277287	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.163;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:116,23:0.17:139
chr11	117100594	rs500389	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	117109270	rs678837	G	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:9,60:0.87:69
chr11	117110740	rs650585	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	117152194	rs57876538	C	CT	4414.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:32,183:0.85:215
chr11	117152540	rs505045	G	T	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:29,160:0.85:189
chr11	117160347	rs539765	A	G	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	117163765	rs490460	C	A	7792.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	117163824	rs638405	C	G	6262.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	117209268	rs573801	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=0.313;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:171,24:0.12:195
chr11	117222592	rs490262	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.20;ReadPosRankSum=0.686;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:166,24:0.13:190
chr11	117232492	rs2305825	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.907;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr11	117241760	rs2305826	T	A	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	117251143	rs2305828	A	G	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	117251521	rs2061293	G	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	117252489	rs897836	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	117258198	rs501776	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr11	117261358	rs60684637	GA	G	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.300;QD=7.32;ReadPosRankSum=-2.322;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr11	117263103	rs478693	T	C	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:24,143:0.86:167
chr11	117266312	rs2305830	C	G	2170.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.252;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.71;ReadPosRankSum=-0.654;SOR=0.508;set=HC	GT:AD:AF:DP	1/1:10,90:0.90:100
chr11	117266754	rs693147	A	C	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:24,105:0.81:129
chr11	117267884	rs573455	A	G	5220.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:37,232:0.86:269
chr11	117282742	rs67023719	C	T	15107.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	0/1:112,640:0.85:752
chr11	117282800	rs522885	G	T	19111.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:1,703:1.00:704
chr11	117282979	rs521099	C	G	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:12,55:0.82:67
chr11	117303393	rs880615	C	T	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr11	117303858	rs11216382	T	C	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	117306291	rs661789	G	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	117309581	rs61905269	G	A	8562.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	117332343	rs2298766	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.161;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-1.462;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:88,12:0.12:100
chr11	117332352	rs588048	A	G	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	117375596	rs2276343	G	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr11	117580254	rs2508559	T	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	117580356	rs605500	C	T	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	117580509	rs655086	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	117580585	rs604245	A	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	117668104	rs11216549	C	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	117693255	rs529623	T	C	3399.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:24,143:0.86:167
chr11	117709028	rs516655	G	A	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	117711232	rs496164	A	G	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	117712887	rs473057	G	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	117713653	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.072;QD=0.28;ReadPosRankSum=0.783;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:88,20:0.19:108
chr11	117772787	rs3839950	GCACA	G	681.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr11	117773110	rs494457	G	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	117774146	rs2186627	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=-1.547;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:168,25:0.13:193
chr11	117774291	rs2845712	A	C	9086.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	117780744	rs12801855	C	T	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	117781435	rs2155194	A	G	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	117784714	rs11216618	T	C	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	117789312	rs201746372	CGGGCTGGAGATGCCT	C	4519.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	117790658	rs10790220	C	G	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	117790674	rs12418028	A	G	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	117799804	rs722729	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.999;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:98,14:0.12:112
chr11	117799923	rs7928668	T	C	6039.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:56,270:0.83:326
chr11	117800083	rs10892196	T	C	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:16,100:0.86:116
chr11	117800169	rs11600129	C	T	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr11	117863829	rs2508450	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	117864047	rs2256111	A	G	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	117869670	rs2229113	A	G	7607.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	117965530	rs2276122	A	G	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.477;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:132,42:0.24:174
chr11	117979744	rs10892216	C	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr11	117979814	rs10892217	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr11	117982495	rs1941635	T	G	9993.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	117988082	rs642215	T	C	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	117988223	rs643014	G	A	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	117988654	rs7123209	G	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr11	117996119	rs7944738	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	118011776	rs668468	G	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	118011860	rs12804550	G	A	1091.28	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:5,47:0.90:52
chr11	118014873	rs112525313	C	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:8,42:0.84:50
chr11	118016039	rs955917	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,47:0.87:54
chr11	118016068	rs1793137	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	118037813	rs8192613	G	T	9433.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:78,374:0.83:452
chr11	118067426	rs648947	A	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:7,90:0.93:97
chr11	118067621	rs951657	A	G	5918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=-0.049;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:33,251:0.88:284
chr11	118068949	rs1617182	C	T	1223.84	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:6,48:0.89:54
chr11	118071097	rs1626649	T	C	416.90	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	118074117	rs1793173	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr11	118074337	rs1793174	A	G	3406.94	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:17,141:0.89:158
chr11	118081345	rs17121881	A	T	4685.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:31,206:0.87:237
chr11	118081468	rs17121882	C	T	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:18,108:0.86:126
chr11	118083664	rs1715429	A	G	5606.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:54,239:0.82:293
chr11	118183316	rs2231443	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.802;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:220,43:0.16:263
chr11	118186305	rs2231449	C	A	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:20,219:0.92:239
chr11	118209960	rs2276424	A	C	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	118210106	rs2276423	G	C	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	118210424	.	T	TAC,TACAC	6616.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.06;ReadPosRankSum=-0.332;SOR=0.733;set=HC	GT:AD:AF:DP	1/2:23,46,144:0.22,0.68:213
chr11	118215075	rs150376137	AGGCT	A	2054.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	118221349	rs3753059	TG	CT	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.677;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=1.608;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:196,36:0.16:232
chr11	118221474	rs1561966	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	118240332	rs11216860	T	C	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	118240361	.	CTT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.77;ReadPosRankSum=-0.887;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr11	118243700	rs34104337	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.13;ReadPosRankSum=-0.985;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr11	118245971	.	CTG	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.498;SOR=0.237;set=HC	GT:AD:AF:DP	0/1:87,12:0.12:99
chr11	118247264	rs11394107	C	CT	987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-1.625;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:23,61:0.73:84
chr11	118255278	rs6589663	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:9,60:0.87:69
chr11	118255662	rs370025001	TAA	T	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=11.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=1.132;SOR=1.645;set=HC	GT:AD:AF:DP	0/1:30,28:0.48:58
chr11	118257081	rs11216863	G	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.05;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	118263388	rs2276422	C	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr11	118347654	rs9332783	A	G	1753.56	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:9,75:0.89:84
chr11	118353037	rs59281381	G	GT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.793;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr11	118362414	rs562780	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.445;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr11	118369265	.	TA	T	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.400;QD=3.26;ReadPosRankSum=-0.693;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:55,24:0.30:79
chr11	118405068	rs12289253	A	G	3391.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:28,139:0.83:167
chr11	118405305	rs45505501	G	A	5467.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:53,236:0.82:289
chr11	118405343	rs512849	G	A	7690.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	118405377	rs45485302	C	A	4416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.25;ReadPosRankSum=0.339;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:48,194:0.80:242
chr11	118405437	rs45548238	CA	TG	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;JOINED;set=Intersection	GT:AD:AF:DP	0/1:30,74:0.71:104
chr11	118405453	rs45474901	T	C	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:20,57:0.74:77
chr11	118406328	rs141837942	CAGTGTGGA	C	5557.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:37,136:0.79:173
chr11	118415847	rs3741320	GA	CC	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	0/1:2,22:0.92:24
chr11	118415931	rs368284513	CT	C	398.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	118416073	rs3825055	A	C	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.412;QD=20.12;ReadPosRankSum=2.134;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:19,124:0.87:143
chr11	118416253	rs2277295	C	T	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:12,55:0.82:67
chr11	118422385	.	C	CAAA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.17;ReadPosRankSum=1.016;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr11	118422868	rs2277293	C	T	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:15,86:0.85:101
chr11	118425051	rs56403966	G	A	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	118425063	rs55857590	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	118425419	rs2277292	G	T	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	118430519	rs11552421	C	T	4344.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:38,189:0.83:227
chr11	118443063	rs375845726	GC	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.344;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	118444525	rs11216907	G	A	3435.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:45,148:0.77:193
chr11	118451901	rs11216911	T	C	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:13,90:0.87:103
chr11	118454177	rs17842763	A	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr11	118471423	rs11216925	T	C	2408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.95;ReadPosRankSum=-1.965;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:17,98:0.85:115
chr11	118471996	rs11216926	C	T	319.31	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr11	118472354	rs10892245	C	A	5337.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:36,222:0.86:258
chr11	118500744	rs141647594	GTT	G,GT	532.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.470;QD=12.39;ReadPosRankSum=0.649;SOR=1.038;set=HC	GT:AD:AF:DP	1/2:6,16,21:0.37,0.49:43
chr11	118502491	rs74426776	GC	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.211;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr11	118505676	rs58507527	GT	G	2101.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	118509668	rs483598	A	G	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.857;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:156,37:0.19:193
chr11	118514625	rs11216938	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.449;QD=1.16;ReadPosRankSum=0.746;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:154,33:0.18:187
chr11	118518964	rs11314049	GC	G	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	118529017	rs6589669	T	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	118529044	rs11448549	C	CG	1703.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	118529069	rs6589670	G	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	118529078	rs6589671	G	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	118530611	rs2276065	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-1.756;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:323,45:0.12:368
chr11	118534082	rs10790256	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.563;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:124,25:0.17:149
chr11	118622744	rs6589689	G	A	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	118625609	rs580079	C	T	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	118651809	rs555649	T	C	4849.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:39,213:0.85:252
chr11	118754649	rs10892307	C	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.885;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:192,33:0.15:225
chr11	118757056	rs5795149	GA	G	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=1.595;QD=8.94;ReadPosRankSum=1.332;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:17,37:0.69:54
chr11	118757191	rs1790192	G	A	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=42.42;SOR=1.745;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	118757201	rs3176908	C	G	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	118757219	rs1623316	C	G	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.799;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=5.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=-1.150;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:10,51:0.84:61
chr11	118769032	rs11217081	G	A	459.85	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr11	118769442	rs7104819	A	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.346;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:159,33:0.17:192
chr11	118781601	rs11376918	C	CA	12936.73	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr11	118781638	rs11376919	C	CG	9800.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	118781655	rs11376920	C	CG	8748.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	118842745	rs36158515	A	AG	3495.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	118842780	.	A	AG	1449.73	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	118868842	rs58467585	A	AG	465.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	118869447	rs12786333	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr11	118884009	rs371143734	AT	A	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.605;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr11	118889114	rs10892321	A	G	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	118898435	rs56966114	AC	A	10681.73	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	118915757	rs11363127	TG	T	3289.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	118915944	rs1043314	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-2.442;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr11	118919132	rs2276060	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.808;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:140,26:0.16:166
chr11	118919206	rs568922	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=1.240;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:178,27:0.13:205
chr11	118920112	rs670192	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.218;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:92,17:0.16:109
chr11	118920453	rs673768	T	C	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.146;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:259,64:0.20:323
chr11	118925341	rs538478	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.365;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:72,15:0.17:87
chr11	118927013	rs57740718	T	TC	4590.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	118938880	rs584115	A	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-0.191;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr11	118938882	rs670526	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-0.181;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr11	118939939	rs5795166	T	TC	3261.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	118947634	rs540261	C	T	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=2.885;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:362,57:0.14:419
chr11	118955679	rs589925	C	T	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.688;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:490,95:0.16:585
chr11	118959331	rs17075	G	A	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:22,107:0.83:129
chr11	118959732	rs549893	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr11	118967758	rs643788	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-1.023;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr11	118968959	rs10544271	TAG	T	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=2.701;QD=3.84;ReadPosRankSum=-1.524;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr11	118970875	rs10892330	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	118971251	rs649870	A	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	118973112	rs3825060	AA	GC	9946.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	118973133	rs10790282	G	A	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:30,157:0.84:187
chr11	118984287	rs4938630	A	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-2.334;QD=1.64;ReadPosRankSum=-1.456;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr11	118985151	rs595782	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.382;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr11	119003322	rs662069	C	A	17723.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr11	119004009	rs672189	G	T	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	119004026	rs537153	C	T	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	119004686	rs658922	T	A	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	119005088	rs512703	C	T	11545.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	119005132	rs100803	C	T	7688.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	119028813	rs626776	C	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	119031841	rs11383101	G	GC	2633.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	119043500	rs644252	T	G	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	119043656	rs643423	C	T	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	119043745	rs561830	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	119052826	rs4245191	C	A	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	119054488	rs10790286	C	T	11283.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	119057413	rs189183071	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.524;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr11	119059404	rs1815811	G	A	8024.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	119063908	rs2301574	C	T	5206.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	119065484	rs60630529	A	AC	10185.73	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	119065709	rs10750139	G	C	9414.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	119144791	rs373788107	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=7.715;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.246;QD=1.57;ReadPosRankSum=-1.405;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr11	119146659	rs2511854	G	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	119148573	rs2510152	G	T	9091.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	119167964	rs140888212	A	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,48:0.83:58
chr11	119184106	.	A	AT	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.924;QD=4.59;ReadPosRankSum=-0.010;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:32,27:0.46:59
chr11	119187879	.	C	G	148	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=11;HapScore=2;MGOF=17;MMLQ=23;MQ=59.65;NF=0;NR=14;PP=148;QD=13.0550866105;SC=GTCAGGGGGGCGGGGGAGGGG;SbPval=1.0;Source=Platypus;TC=39;TCF=10;TCR=29;TR=14;WE=119187887;WS=119187869;set=Platypus	GT:AD:AF:DP	0/1:25,14:0.36:39
chr11	119215165	rs10790289	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.021;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:84,19:0.18:103
chr11	119215253	rs2509388	G	C	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.841;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr11	119215256	rs10892350	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.477;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:50,8:0.14:58
chr11	119216231	rs2510143	A	G	4628.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:41,204:0.83:245
chr11	119217254	rs883247	C	T	952.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=0.367;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr11	119217311	rs883245	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr11	119227518	rs369041516	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.236;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr11	119227844	rs11217253	G	C	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:10,73:0.88:83
chr11	119229374	rs7937208	T	C	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:14,129:0.90:143
chr11	119229964	rs2241646	G	A	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:31,157:0.84:188
chr11	119231137	.	C	CT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.991;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr11	119244095	rs587985	C	T	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:28,127:0.82:155
chr11	119252151	rs565296	C	T	16308.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr11	119252199	rs670906	T	G	14607.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:1,542:1.00:543
chr11	119290034	rs1054735	G	C	3046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.16;ReadPosRankSum=-1.522;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:24,135:0.85:159
chr11	119291403	rs3138093	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.210;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr11	119291445	rs3138092	T	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.321;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:108,25:0.19:133
chr11	119291480	rs3138091	G	A	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:26,158:0.86:184
chr11	119291688	rs3751026	A	G	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	119509625	rs1022080	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	119510644	rs7940667	A	C	7810.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	119545224	rs113705862	T	TG	2964.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	119548052	rs10892429	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.924;SOR=1.620;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr11	119584506	rs4245205	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	119879425	rs648374	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	119984202	rs506127	A	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	119984535	rs519672	G	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr11	119986167	rs503559	T	C	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:32,263:0.89:295
chr11	119987576	rs488222	C	T	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	119992839	rs72245071	AGT	A	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.898;QD=7.03;ReadPosRankSum=0.650;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr11	119992871	.	T	TGTGA	681	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=28;MQ=60.71;NF=4,4;NR=29,29;PP=517,681;QD=15.7575757576;SC=TGTGTGTGTGTGAAAGACGTG;SbPval=0.71;Source=Platypus;TC=41;TCF=6;TCR=35;TR=33,33;WE=119992879;WS=119992861;set=Platypus	GT:AD:AF:DP	0/1:8,33:0.80:41
chr11	119992871	rs2508493	T	A,TGTGTGTGA	2158.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=69;set=Intersection	GT:AF:DP	1/2:0.29,0.69:55
chr11	119993897	rs66674912	CCT	C	20335.73	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr11	119999191	rs569044	A	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	120040695	rs61900479	C	T	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:16,130:0.89:146
chr11	120041110	rs7949789	T	A	24668.77	.	AC=2;AF=1.00;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	1/1:0,895:1.00:895
chr11	120041444	rs4936509	C	T	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	120097498	rs873059	T	C	6239.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:42,257:0.86:299
chr11	120099658	rs2508489	A	G	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	120099679	rs2508490	G	A	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:27,200:0.88:227
chr11	120107411	rs882856	G	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:9,90:0.91:99
chr11	120198093	rs1893261	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr11	120200671	rs117207582	C	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=3.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=2.019;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:301,60:0.17:361
chr11	120278359	rs6589812	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr11	120278477	rs34172482	A	G	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:19,116:0.86:135
chr11	120278688	rs7937612	T	C	621.96	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr11	120292570	rs532006	T	A	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	120312746	rs723937	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:13,61:0.82:74
chr11	120313055	rs199708925	CT	C	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.282;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:65,36:0.36:101
chr11	120319064	rs2305008	A	C	4270.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:25,178:0.88:203
chr11	120330149	rs2305010	G	C	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr11	120347875	.	G	A	1330.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr11	120347886	rs111312404	T	TTGTTG	1511.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr11	120355230	rs503473	A	G	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.438;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:201,44:0.18:245
chr11	120382409	rs7952113	T	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	120385841	rs2243746	T	C	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:13,73:0.85:86
chr11	120530973	rs6589829	C	T	3855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.90;ReadPosRankSum=-1.235;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:34,170:0.83:204
chr11	120690372	rs56326825	T	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=2.812;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr11	120707644	rs3934628	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=5.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.994;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:112,30:0.21:142
chr11	120732508	rs3824978	C	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:6,43:0.88:49
chr11	120742684	.	C	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.174;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:89,15:0.14:104
chr11	120776001	rs2156634	G	A	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	120823528	rs10750178	A	G	6413.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	120827609	rs644057	A	G	7502.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	120831878	rs607142	C	T	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	120852961	rs499804	C	A	8400.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	120857051	rs11218092	G	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	120989335	rs612969	A	G	6524.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr11	120996292	rs536069	A	G	11735.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr11	121000212	rs643744	T	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	121000784	rs586473	T	C	12071.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr11	121016145	rs4936584	G	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	121016818	rs12275038	G	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	121016838	rs7130952	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.432;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.071;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr11	121032978	rs526433	G	A	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	121033105	rs662496	A	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	121035860	rs546916	G	T	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	121037530	rs489985	G	A	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	121037554	rs615697	T	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	121178302	rs1061332	A	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	121348741	rs138337334	CAAAAA	C	1130.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.75;QD=29.76;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:7,31:0.82:38
chr11	121367557	rs199875238	CT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=18.765;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.206;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr11	121367626	rs12364988	T	C	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	121393212	rs630813	C	G	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	121403229	rs636588	T	C	9251.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	121403345	rs631232	T	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	121403396	rs35892410	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.938;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr11	121414456	rs2276345	A	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr11	121414476	rs2276346	G	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr11	121416187	rs11218325	A	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	121437819	rs1699107	C	G	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	121445084	rs1792126	T	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	121447807	rs1790212	A	G	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	121456962	rs1699102	C	T	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	121460664	rs1625828	G	A	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	121475798	rs1784929	T	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	121483401	rs1010159	C	T	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	121483651	rs1010158	G	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	121489416	rs1784933	G	A	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	121491782	rs1792120	G	A	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	121493001	rs1614735	T	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	121493072	rs11454566	T	TA	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr11	121498197	.	T	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.537;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:77,22:0.22:99
chr11	122022927	rs543412	C	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.146;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-1.031;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:121,24:0.17:145
chr11	122165766	rs532540	G	A	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	122172113	rs558962	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	122172318	rs615683	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.37;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	122172321	rs693194	T	C	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.19;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	122646967	rs12790613	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.723;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:168,40:0.19:208
chr11	122650172	rs4935813	C	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	122659918	rs955051	T	G	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:36,159:0.82:195
chr11	122665437	rs872414	A	G	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=0.306;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:10,45:0.82:55
chr11	122665549	rs11218816	C	T	510.98	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr11	122678728	rs12793476	A	G	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:22,95:0.81:117
chr11	122680599	rs1540108	C	T	3064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-0.656;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:41,137:0.77:178
chr11	122709178	rs3134425	T	C	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	122724592	rs58811874	CT	C	1463.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,48:0.76:63
chr11	122738062	rs57365669	CAA	C,CA	848.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=22.34;SOR=2.179;set=HC	GT:AD:AF:DP	1/2:0,27,11:0.71,0.29:38
chr11	122738261	rs2272094	A	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	122738896	.	ATGTGTGTGTG	A	269.75	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	122775227	rs3107630	T	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	122795781	rs75347095	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.479;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr11	122849816	rs7939002	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.172;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.885;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr11	122928934	rs71057327	G	GA	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.557;QD=7.61;ReadPosRankSum=0.880;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr11	122929407	rs1064585	T	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.214;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.836;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:76,13:0.15:89
chr11	122929624	rs1461496	A	G	5612.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	122930108	rs76152311	T	TTG	950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.087;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:220,39:0.15:259
chr11	122931075	rs149047184	A	AC	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.767;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr11	122931213	rs1461497	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.348;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:134,29:0.18:163
chr11	122931528	rs3057456	AAC	A	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.609;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:84,13:0.13:97
chr11	122931625	rs41361350	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.968;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr11	122932123	rs10892958	C	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.524;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr11	122945667	.	G	GT	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.281;QD=5.12;ReadPosRankSum=-1.162;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr11	123065683	rs2302605	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.318;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:120,23:0.16:143
chr11	123396674	rs35709687	G	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-1.231;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:47,9:0.16:56
chr11	123431391	rs72132123	CGTGTGTGTGTGT	C,CGT	2016.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;QD=35.38;SOR=1.314;set=HC	GT:AD:AF:DP	1/2:0,24,33:0.42,0.58:57
chr11	123454978	rs58457879	T	C	1691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.092;QD=16.27;ReadPosRankSum=-0.664;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:20,84:0.81:104
chr11	123455101	rs113013432	T	TG	479.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr11	123455109	rs115338953	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr11	123455124	rs116184013	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	123464637	rs1148101	G	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	123477352	rs2279519	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.793;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:60,10:0.14:70
chr11	123479150	rs1148088	G	A	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	123485444	rs732211	T	C	7788.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	123485561	rs1275061	T	C	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	123489111	rs1275077	C	T	4756.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:28,188:0.87:216
chr11	123504673	rs1148111	C	G	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	123504959	rs1148110	C	G	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	123596703	rs3183878	A	C	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:12,92:0.88:104
chr11	123597804	rs679597	A	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr11	123598941	rs2282644	T	C	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-1.087;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:118,28:0.19:146
chr11	123599044	rs675172	T	C	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:29,106:0.79:135
chr11	123600475	rs1144507	A	G	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:36,152:0.81:188
chr11	123676388	rs76301014	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.582;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:112,25:0.18:137
chr11	123753803	rs1939928	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr11	123753937	rs1939927	A	G	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	123754844	rs10893099	T	C	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	123777049	rs10750249	G	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,43:0.83:52
chr11	123777302	rs17127947	T	G	7018.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:57,308:0.84:365
chr11	123777412	rs17127950	A	G	5812.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:39,250:0.87:289
chr11	123777497	rs10750250	G	A	7239.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.29;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	123777497	.	GCGATC	ACGATC,ACGATT	2709	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=60.0;NF=112,21;NR=110,12;PP=2709,231;QD=20;SC=GCCATGGCCTGCGATCGCTAC;SbPval=0.53;Source=Platypus;TC=222;TCF=112;TCR=110;TR=222,33;WE=123777510;WS=123777487;set=Platypus	GT:AF:DP	0/1:1.00:222
chr11	123777502	rs61907183	C	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=8.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.078;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:192,42:0.18:234
chr11	123777536	rs7926767	G	A	3946.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:37,155:0.81:192
chr11	123777861	rs61748875	T	C	8212.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:52,344:0.87:396
chr11	123777986	rs7942047	T	C	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	123778031	rs7927385	G	A	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chr11	123811344	rs11219362	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,33:0.85:39
chr11	123847473	rs55944888	A	G	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:10,79:0.89:89
chr11	123848121	rs17686210	T	C	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	123848212	rs17759513	C	T	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	123848516	rs35674999	C	A	4970.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:37,200:0.84:237
chr11	123886307	rs79057843	CA	TG	15549.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;JOINED;set=Intersection	GT:AD:AF:DP	0/1:90,380:0.81:470
chr11	123886681	rs1893766	A	G	11087.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:101,483:0.83:584
chr11	123886865	rs4084209	T	A	15596.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:130,630:0.83:760
chr11	123886984	rs4936880	A	G	8642.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:80,359:0.82:439
chr11	123887164	rs4936881	A	C	6180.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:59,247:0.81:306
chr11	123887175	rs61908597	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.726;QD=1.86;ReadPosRankSum=-0.828;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:228,50:0.18:278
chr11	123887184	rs4936882	T	G	5438.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:46,217:0.83:263
chr11	123887314	rs517598	T	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	123893987	rs142337884	G	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=-0.729;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:5,31:0.86:36
chr11	123894119	rs12366219	A	G	4499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.079;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=46.58;MQRankSum=-0.475;QD=20.64;ReadPosRankSum=0.792;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:29,189:0.87:218
chr11	123894136	rs28499345	A	G	8429.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.13;QD=30.99;SOR=2.619;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	123909627	rs11219420	T	C	7430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=54.43;MQRankSum=-3.030;QD=32.59;ReadPosRankSum=0.276;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:48,180:0.79:228
chr11	123909637	rs4936889	G	T	7824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-2.700;QD=30.45;ReadPosRankSum=-0.267;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:52,205:0.80:257
chr11	123909695	rs3894197	G	C	6594.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:65,283:0.81:348
chr11	123994894	rs73030862	T	A	714.41	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,28:0.90:31
chr11	124007701	rs371615800	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=2.066;QD=2.56;ReadPosRankSum=-0.432;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr11	124007890	rs34188444	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.714;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr11	124013103	rs58951195	G	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.259;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:103,26:0.20:129
chr11	124029037	rs4936895	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.793;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr11	124029075	rs4935866	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.113;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:94,22:0.19:116
chr11	124029292	rs1893011	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.099;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:211,51:0.19:262
chr11	124029541	rs4936896	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-1.743;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:457,66:0.13:523
chr11	124056377	rs2512228	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-1.915;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:192,28:0.13:220
chr11	124056581	rs2466584	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=1.122;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:265,37:0.12:302
chr11	124056732	rs2512227	T	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.211;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:152,27:0.15:179
chr11	124056787	rs2512226	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.993;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:168,24:0.12:192
chr11	124086175	rs2508890	T	C	5511.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:37,204:0.85:241
chr11	124095414	rs10893172	C	G	7658.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:51,318:0.86:369
chr11	124095525	rs11219508	T	C	7301.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:56,309:0.85:365
chr11	124095647	rs2466615	A	C	10263.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:78,423:0.84:501
chr11	124096122	rs7946182	G	A	4505.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:64,175:0.73:239
chr11	124096195	rs7946214	G	A	5466.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:69,225:0.77:294
chr11	124096247	rs2466613	G	A	8915.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:84,372:0.82:456
chr11	124120302	rs2512239	A	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr11	124120821	rs12099154	T	C	7443.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:61,320:0.84:381
chr11	124189729	rs2512219	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.246;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:142,29:0.17:171
chr11	124190137	rs2466621	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.538;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr11	124252422	rs503220	G	A	5397.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:52,227:0.81:279
chr11	124252718	rs886201	G	A	2733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.28;MQRankSum=-1.437;QD=19.39;ReadPosRankSum=-0.143;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:30,111:0.79:141
chr11	124252750	rs886202	G	A	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.674;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.09;MQRankSum=-1.846;QD=20.19;ReadPosRankSum=0.937;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:28,92:0.77:120
chr11	124252892	rs644147	A	G	5963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.263;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-2.279;QD=19.43;ReadPosRankSum=-0.032;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:63,244:0.79:307
chr11	124253100	rs71491826	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=35.524;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-13.570;QD=0.95;ReadPosRankSum=-0.202;SOR=1.710;set=HC	GT:AD:AF:DP	0/1:339,56:0.14:395
chr11	124253147	rs530704	A	G	4770.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:140,206:0.60:346
chr11	124253161	rs530740	G	A	7000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.278;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=18.681;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=6.809;QD=21.02;ReadPosRankSum=-1.776;SOR=1.419;set=HC	GT:AD:AF:DP	0/1:145,188:0.56:333
chr11	124253170	rs530765	G	A	6561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.821;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=25.559;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=5.500;QD=20.90;ReadPosRankSum=-0.689;SOR=1.610;set=HC	GT:AD:AF:DP	0/1:148,166:0.53:314
chr11	124253181	rs28373946	T	C	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:27,263:0.91:290
chr11	124253333	rs645986	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr11	124266697	rs201661436	A	AG	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.500;MQ=52.12;MQRankSum=0.626;QD=2.57;ReadPosRankSum=0.215;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:131,30:0.19:161
chr11	124266906	rs530992	C	T	6138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=0.211;QD=17.79;ReadPosRankSum=0.468;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:88,257:0.74:345
chr11	124266912	rs28398895	A	G	13369.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.60;MQRankSum=7.018;QD=38.87;ReadPosRankSum=4.819;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:8,336:0.98:344
chr11	124267148	rs77374761	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr11	124267177	rs61910862	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.09;QD=27.57;SOR=3.296;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	124267189	rs507335	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.47;QD=27.02;SOR=2.935;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	124293767	rs2188707	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.033;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.930;SOR=1.590;set=HC	GT:AD:AF:DP	0/1:48,8:0.14:56
chr11	124294236	rs4057749	A	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-1.393;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:143,22:0.13:165
chr11	124294377	rs4057750	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.20;ReadPosRankSum=-1.235;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:267,36:0.12:303
chr11	124412548	rs78315379	T	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	124412838	rs61747005	C	T	9885.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr11	124439883	rs1942660	G	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	124440617	rs12792184	C	T	9276.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	124489274	rs35569094	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-1.435;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr11	124489567	rs34237602	T	C	7303.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:52,322:0.86:374
chr11	124493199	rs678132	C	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.387;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:606,85:0.12:691
chr11	124493411	rs679079	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.533;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr11	124494780	rs113773557	A	AT	778.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	124500761	rs2156162	A	G	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:40,187:0.82:227
chr11	124501921	rs2187152	A	G	1345.18	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:4,43:0.91:47
chr11	124502260	rs1047661	A	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr11	124508345	rs2187155	A	G	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:5,78:0.94:83
chr11	124539236	rs512225	C	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.742;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:197,40:0.17:237
chr11	124622193	.	TA	T	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=3.086;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=2.307;QD=2.85;ReadPosRankSum=-0.356;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr11	124624705	rs72422616	TA	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.606;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:91,30:0.25:121
chr11	124739332	.	A	C	154	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=8;HapScore=2;MGOF=13;MMLQ=24;MQ=57.17;NF=2;NR=5;PP=154;QD=26.9673160782;SC=TTCGCCCCCCACCGCCCCGCC;SbPval=0.63;Source=Platypus;TC=7;TCF=2;TCR=5;TR=7;WE=124739340;WS=124739322;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	124739699	rs114324840	T	C	783.89	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:3,29:0.91:32
chr11	124739988	rs4936957	T	C	6617.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:50,274:0.85:324
chr11	124740410	rs3923890	A	T	1314.22	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:6,54:0.90:60
chr11	124740691	rs7925879	A	G	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,41:0.85:48
chr11	124742385	rs4935898	G	A	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:30,130:0.81:160
chr11	124746180	rs55706177	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr11	124746449	rs73615452	G	C	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=-0.865;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:15,43:0.74:58
chr11	124747837	rs7933204	G	A	10395.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:75,425:0.85:500
chr11	124748066	.	C	G	1940.77	.	AC=1;AF=0.500;AN=2;DP=327;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:219,105:0.32:324
chr11	124748185	rs145185934	TCTC	T	11989.73	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:52,292:0.85:344
chr11	124750232	rs4366494	C	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	124763473	rs55852661	C	T	799.80	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:4,31:0.89:35
chr11	124793682	rs10790715	T	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.887;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:168,38:0.18:206
chr11	124856563	rs146292043	CTG	C	123.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:63,13:0.17:76
chr11	124856951	rs4608089	C	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	124946758	rs61912691	A	G	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.830;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:210,51:0.20:261
chr11	124946817	rs12276292	C	A	4191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.60;ReadPosRankSum=1.338;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:31,106:0.77:137
chr11	124946823	rs12276295	C	T	4100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.79;ReadPosRankSum=0.900;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:29,100:0.78:129
chr11	124947112	rs61912693	C	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.466;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr11	124947149	rs12276567	G	A	1870.78	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:10,78:0.89:88
chr11	124947396	rs55752830	A	G	4030.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:32,178:0.85:210
chr11	124951311	rs75801851	T	C	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	124951467	rs4396301	C	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	124954282	rs948270	A	G	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	124954652	rs4936976	G	C	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	124955032	rs948268	T	C	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	124955399	rs3802807	G	A	6553.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:36,280:0.89:316
chr11	124955977	rs3808995	C	T	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	124958122	rs3802808	A	G	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	124967487	rs1043821	T	A	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:11,104:0.90:115
chr11	124967678	rs3737350	A	G	1656.79	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:7,67:0.91:74
chr11	124972208	rs14065	A	G	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:24,160:0.87:184
chr11	124972377	rs2155663	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr11	124972518	rs2155664	A	G	3491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.90;ReadPosRankSum=-0.540;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:27,86:0.76:113
chr11	124972522	rs2155665	T	C	3465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.67;ReadPosRankSum=-0.680;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:27,86:0.76:113
chr11	124972691	rs2155666	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr11	125003004	rs653552	A	G	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:22,98:0.82:120
chr11	125009529	rs11219919	G	A	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	125128990	rs139047120	T	A	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	125255715	rs3740892	A	G	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	125280041	rs3824919	G	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-2.074;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:385,62:0.14:447
chr11	125281795	rs7130081	G	A	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:25,111:0.82:136
chr11	125298871	rs595849	A	G	10775.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:1,403:1.00:404
chr11	125298890	rs11220070	C	G	9257.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:83,396:0.83:479
chr11	125299738	rs3740894	C	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.125;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=1.048;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:95,14:0.13:109
chr11	125316073	rs34504992	T	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-1.208;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr11	125323965	rs11220082	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.533;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr11	125351472	rs597570	A	T	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=-0.077;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:11,59:0.84:70
chr11	125365285	rs11220099	T	C	8869.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:103,385:0.79:488
chr11	125442503	rs369141998	CT	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.580;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:168,52:0.24:220
chr11	125443429	rs1284351	T	C	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	125443473	rs1284352	A	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	125443562	rs78075934	T	C	773.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.36;ReadPosRankSum=0.027;SOR=0.671;set=HC	GT:AD:AF:DP	1/1:3,35:0.92:38
chr11	125445394	rs494989	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr11	125445679	rs2702007	C	G	2049.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.59;ReadPosRankSum=-0.590;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:10,57:0.85:67
chr11	125445680	rs61493355	A	AT	562.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.813;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chr11	125446070	rs550276	A	G	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.18;ReadPosRankSum=-0.229;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:11,81:0.88:92
chr11	125452081	rs11220136	C	T	368.85	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr11	125452300	rs55912941	A	AC	8461.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	125452313	rs4627097	A	G	8323.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	125462162	rs573173	A	G	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	125465862	rs10082632	T	C	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:26,183:0.88:209
chr11	125465905	rs79017058	G	T	3660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.00;ReadPosRankSum=0.952;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:24,159:0.87:183
chr11	125466001	rs12289190	A	G	1725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.75;ReadPosRankSum=0.383;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:15,43:0.74:58
chr11	125466010	rs10082634	T	G	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.27;ReadPosRankSum=0.163;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:15,44:0.75:59
chr11	125467144	rs513209	C	A	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	125472348	rs74685340	T	A	1478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=-0.904;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:34,75:0.69:109
chr11	125472442	rs11822999	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	125472616	rs10893404	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:13,59:0.82:72
chr11	125473996	rs7115074	G	A	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:21,122:0.85:143
chr11	125475344	rs56188726	T	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr11	125475440	rs12284570	C	G	5407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.59;ReadPosRankSum=3.079;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:31,130:0.81:161
chr11	125475443	rs12284664	G	A	5471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.19;ReadPosRankSum=2.470;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:32,138:0.81:170
chr11	125476111	rs12285032	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr11	125476252	rs34964592	C	G	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:15,97:0.87:112
chr11	125478209	rs6590153	C	T	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	125478239	rs7931989	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr11	125479363	rs2241502	G	A	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	125479496	rs2241501	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=-0.420;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:143,21:0.13:164
chr11	125482650	rs80101840	G	A	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:19,78:0.80:97
chr11	125482713	rs11220158	G	A	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr11	125483171	rs11220159	G	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	125483885	rs12289897	G	A	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,47:0.82:57
chr11	125488404	rs17140116	C	T	3051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.798;QD=19.19;ReadPosRankSum=-0.825;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,132:0.83:159
chr11	125488471	rs113627561	ATAATAT	A	2996.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chr11	125489788	rs525186	A	C	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	125490765	rs71690379	A	AT	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=4.500;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.138;QD=4.67;ReadPosRankSum=-1.218;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:55,50:0.48:105
chr11	125495740	rs77183579	A	G	5404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.78;ReadPosRankSum=-0.416;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:28,132:0.82:160
chr11	125495746	rs76045215	C	G	5363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.95;ReadPosRankSum=-0.708;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:27,131:0.83:158
chr11	125497466	rs491528	G	T	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr11	125499063	rs78170873	A	G	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,54:0.75:72
chr11	125507277	rs3731422	T	C	885.31	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:4,36:0.90:40
chr11	125514274	rs541725	T	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.449;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.250;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr11	125523456	rs149558361	C	CTG	406.52	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:1,11:0.92:12
chr11	125525195	rs506504	A	G	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	125546413	rs76133534	A	T	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:9,73:0.89:82
chr11	125547660	rs7949943	C	G	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.119;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:243,52:0.18:295
chr11	125547869	rs34788353	C	T	8945.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:61,402:0.87:463
chr11	125616483	rs498803	G	T	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	125616502	rs2553829	T	A	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	125617193	rs11220207	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=1.600;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:82,13:0.14:95
chr11	125617376	rs5795459	CT	C	1344.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;MQ=60.27;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	125617610	rs2114084	A	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.169;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr11	125617908	rs2282539	G	A	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr11	125618709	.	TCA	T	859	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=8;HapScore=1;MGOF=18;MMLQ=25;MQ=60.0;NF=6;NR=12;PP=859;QD=48.0555555556;SC=CTAAAAAAAATCACACACACA;SbPval=0.72;Source=Platypus;TC=21;TCF=8;TCR=13;TR=18;WE=125618718;WS=125618699;set=Platypus	GT:AD:AF:DP	1/1:3,18:0.86:21
chr11	125618728	rs35822751	CA	C	1255.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	125618730	rs374899259	CT	C	1255.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	125618731	.	T	C	502	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=33;MMLQ=25;MQ=60.0;NF=14;NR=11;PP=502;QD=21.4708485019;SC=ACACACACACTACAGAAGAGG;SbPval=0.64;Source=Platypus;TC=26;TCF=14;TCR=12;TR=25;WE=125618739;WS=125618721;set=Platypus	GT:AD:AF:DP	1/1:1,25:0.96:26
chr11	125647286	rs76476146	C	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:31,113:0.78:144
chr11	125647712	rs522690	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=5.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.938;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:93,20:0.18:113
chr11	125648503	rs494361	G	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=1.559;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:346,67:0.16:413
chr11	125659177	rs79402356	C	T	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:16,47:0.75:63
chr11	125659371	rs78883072	G	A	5008.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:25,210:0.89:235
chr11	125707672	rs73621179	C	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:8,50:0.86:58
chr11	125708198	rs10160391	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-1.206;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:110,18:0.14:128
chr11	125763610	rs35423925	A	AT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.598;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.046;QD=0.67;ReadPosRankSum=-1.174;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr11	125766044	rs549990	C	A	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.155;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:337,62:0.16:399
chr11	125766173	rs622756	A	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.696;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:180,34:0.16:214
chr11	125766204	rs600761	G	C	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.136;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:145,25:0.15:170
chr11	125766207	rs471980	C	T	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.526;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:143,25:0.15:168
chr11	125775016	rs181093713	C	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.971;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:74,13:0.15:87
chr11	125776216	rs34692223	A	ATT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.421;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr11	125776259	rs681416	G	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.687;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr11	125830970	rs684535	A	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-1.210;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:154,24:0.13:178
chr11	125864972	rs138741332	AAAC	A	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-0.530;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr11	125867053	rs11220309	G	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.481;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr11	125891103	rs3832751	C	CA	3298.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	125891269	rs3740912	C	T	8217.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	126045666	.	TCCCTGGCTGCCGTGGTCAGAAATTGCCATAACATG	T	4850.73	.	AC=1;AF=0.500;AN=2;DP=171;set=Intersection	GT:AD:AF:DP	0/1:35,132:0.79:167
chr11	126045822	rs560813	T	C	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:14,93:0.87:107
chr11	126045882	rs75462411	C	T	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:8,60:0.88:68
chr11	126075768	rs534804	G	A	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:14,86:0.86:100
chr11	126079333	rs1783955	G	A	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:9,108:0.92:117
chr11	126080611	rs149928866	CTTAT	C	615.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr11	126080757	rs608367	T	C	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:22,90:0.80:112
chr11	126081336	rs587891	T	C	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:35,178:0.84:213
chr11	126134698	rs638766	T	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr11	126139100	rs1786702	T	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,53:0.82:65
chr11	126139313	rs1786703	T	A	3235.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:24,135:0.85:159
chr11	126146244	rs56321210	C	T	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	126147697	rs667627	G	A	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr11	126161490	rs614700	T	C	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:22,93:0.81:115
chr11	126162862	rs7932766	C	T	8783.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:60,369:0.86:429
chr11	126163124	rs609634	C	T	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:23,93:0.80:116
chr11	126163612	rs8177376	T	G	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:10,111:0.92:121
chr11	126163691	rs611953	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:9,58:0.87:67
chr11	126164349	rs625413	T	C	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:18,80:0.82:98
chr11	126176578	rs637462	G	A	3040.82	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:16,128:0.89:144
chr11	126201238	rs651983	G	T	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:20,138:0.87:158
chr11	126201290	rs651922	A	G	4435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.37;ReadPosRankSum=-0.523;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:35,194:0.85:229
chr11	126201403	rs616360	T	C	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:26,88:0.77:114
chr11	126201458	rs651034	A	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr11	126213341	rs240537	G	T	6982.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:63,297:0.82:360
chr11	126275960	rs10893506	T	C	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	126277216	rs2230278	C	T	6982.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	126277570	rs11220480	A	G	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:28,160:0.85:188
chr11	126278075	rs2230279	C	T	11493.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr11	126279365	rs1316361	A	T	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	126283785	rs2236653	C	T	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	126294817	rs948052	G	A	8362.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	126295435	rs7926757	T	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr11	126301449	rs3802816	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-0.245;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:118,18:0.13:136
chr11	126301481	rs3802817	T	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.849;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:66,11:0.14:77
chr11	126305279	rs4937132	C	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.825;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:127,20:0.14:147
chr11	126310082	rs878830	A	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	126315024	rs3802819	T	C	8336.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	126316610	rs1574534	C	T	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	126343135	rs12786235	A	C	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	126396674	rs674537	G	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	126526181	rs523249	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	126551553	.	T	G	20	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=2;MGOF=142;MMLQ=18;MQ=60.72;NF=4;NR=0;PP=20;QD=13.6928031368;SC=GATCAGTGCTTGAGATTTGCA;SbPval=1.0;Source=Platypus;TC=21;TCF=18;TCR=3;TR=4;WE=126551561;WS=126551550;set=Platypus	GT:AD:AF:DP	1/0:17,4:0.19:21
chr11	126873592	rs494442	C	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.479;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:415,62:0.13:477
chr11	126873721	rs11377295	G	GC	4340.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	126968477	rs10893631	C	T	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:43,184:0.81:227
chr11	128443083	rs7935676	G	C	2002.82	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:8,80:0.91:88
chr11	128443099	rs7935393	A	C	1652.96	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:7,65:0.90:72
chr11	128634760	rs74400777	C	T	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	128638216	rs35044982	TG	T	5109.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	128642979	rs12418597	C	T	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr11	128651893	rs35195224	A	G	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.262;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:547,109:0.17:656
chr11	128652012	rs639336	G	T	7761.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	128652053	rs3216814	A	AG	6264.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	128675292	rs7113191	T	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.391;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:256,39:0.13:295
chr11	128675401	rs7127621	C	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.372;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:230,44:0.16:274
chr11	128772452	rs11221503	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.245;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr11	128781339	rs6590357	T	C	15630.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr11	128781978	rs7118824	T	G	12786.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	128782002	rs7118833	T	C	11645.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	128782012	rs7102584	C	G	10365.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	128786139	rs61176061	A	AGATGGATG	1082.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	128786294	rs4937391	G	A	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	128804789	rs2155548	C	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	128842243	rs77561606	A	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.25;ReadPosRankSum=-0.551;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr11	128842251	rs76301868	G	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.83;ReadPosRankSum=-0.728;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:1,12:0.92:13
chr11	128846547	rs665619	C	A	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	128846664	rs10893943	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr11	128855753	.	G	A	66	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5002;HP=2;HapScore=2;MGOF=35;MMLQ=20;MQ=58.12;NF=4;NR=1;PP=66;QD=20.1542425094;SC=GTGTGTGTGTGTATATATATA;SbPval=0.88;Source=Platypus;TC=14;TCF=9;TCR=5;TR=5;WE=128855761;WS=128855743;set=Platypus	GT:AD:AF:DP	1/0:9,5:0.36:14
chr11	128857882	rs57177179	TAAG	T	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=3.385;QD=5.76;ReadPosRankSum=-1.391;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:97,26:0.21:123
chr11	128868090	rs669678	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	128868239	rs670440	T	C	9657.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr11	128932128	rs35714464	A	AG	9192.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	128934033	.	T	TAAA,TA	45	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5046,0.4954;HP=11;HapScore=3;MGOF=32;MMLQ=15;MQ=60.0;NF=0,0;NR=5,5;PP=45,7;QD=10.8;SC=CAAAGAGTCTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=5,5;WE=128934041;WS=128934023;set=Platypus	GT:AF:DP	0/1:0.62:8
chr11	128993935	rs34358416	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.032;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr11	129061849	rs2511810	G	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	129743012	rs1650826	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.889;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:91,16:0.15:107
chr11	129752991	rs2293664	G	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.124;SOR=1.235;set=HC	GT:AD:AF:DP	0/1:75,12:0.14:87
chr11	129753900	rs2303663	T	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.277;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:159,28:0.15:187
chr11	129754103	rs3214551	T	TG	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=1.268;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:138,18:0.12:156
chr11	129755669	rs1783914	G	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	129758327	rs1650823	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=1.166;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:123,17:0.12:140
chr11	129784456	rs2241575	G	A	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.069;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:105,26:0.20:131
chr11	129785594	rs3734073	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.310;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:80,14:0.15:94
chr11	129785816	rs10561615	AAACT	A	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=5.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.610;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:72,10:0.12:82
chr11	129801043	rs2277033	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=0.465;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:109,31:0.22:140
chr11	129940806	rs112826009	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	129998900	rs651935	T	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	130060612	rs858704	A	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.349;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:151,28:0.16:179
chr11	130064223	rs610005	A	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.467;QD=2.09;ReadPosRankSum=-1.056;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:133,27:0.17:160
chr11	130064647	rs597661	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-1.033;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:290,48:0.14:338
chr11	130064705	rs597576	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-2.310;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:124,21:0.14:145
chr11	130064747	rs58417767	ATGTGTGTG	A	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=1.023;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:47,7:0.13:54
chr11	130066335	rs476106	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=2.212;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:197,31:0.14:228
chr11	130066372	rs858713	G	A	7328.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	130066452	rs11368852	G	GC	677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.311;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:401,70:0.15:471
chr11	130069790	rs613501	T	G	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	130271647	rs747249	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-2.160;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:125,17:0.12:142
chr11	130271678	rs747250	T	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.031;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.407;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:178,24:0.12:202
chr11	130275749	rs11222085	T	C	4891.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:33,188:0.85:221
chr11	130281488	rs2131535	G	A	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	130284344	rs7106106	T	C	6331.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	130297948	rs7927048	C	G	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	130297957	rs7942034	T	C	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.28;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	130298117	rs10548872	GGCA	G	4397.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	130298447	rs903024	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	130331351	rs376090898	C	T	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:252,136:0.35:388
chr11	130331898	.	C	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.203;QD=2.69;ReadPosRankSum=0.186;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:133,34:0.20:167
chr11	130542882	rs7933829	C	T	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:14,94:0.87:108
chr11	130716157	rs7943757	C	T	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:26,92:0.78:118
chr11	130749715	rs2282528	A	G	4005.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:37,174:0.82:211
chr11	130750642	rs2298566	A	C	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:28,145:0.84:173
chr11	130775782	rs1865298	C	T	6124.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:73,268:0.79:341
chr11	130776646	rs4586174	T	A	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:28,147:0.84:175
chr11	130780225	rs681982	C	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	130780270	rs1237478	C	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.46;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	130784754	rs3751037	C	G	4276.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:22,172:0.89:194
chr11	130784971	rs3751036	C	G	2834.94	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:11,99:0.90:110
chr11	131530083	rs2472253	G	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	131530984	rs191109652	G	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-0.300;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:64,11:0.15:75
chr11	131531000	rs2739287	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	131531015	rs2658857	T	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	132177563	rs2305272	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.478;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:197,35:0.15:232
chr11	132177633	rs2305271	A	C	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	132184394	rs730253	G	C	1795.78	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:10,71:0.88:81
chr11	132306153	rs1940024	T	C	6093.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:53,263:0.83:316
chr11	132306403	rs2298479	G	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr11	132306682	rs145479085	AAC	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.791;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:60,8:0.12:68
chr11	132812642	rs12575270	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.891;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.690;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr11	133712110	rs71477456	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr11	133781706	rs35883589	C	T	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=1.426;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:10,40:0.80:50
chr11	133788869	rs10791338	A	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:7,98:0.93:105
chr11	133788992	rs12800905	T	C	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:11,54:0.83:65
chr11	133791928	rs34631144	G	A	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:18,70:0.80:88
chr11	133792021	rs596430	T	C	7020.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:32,190:0.86:222
chr11	133792060	rs34274954	T	A	7275.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:38,193:0.84:231
chr11	133792242	rs79137364	T	A	839.28	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:3,31:0.91:34
chr11	133794599	rs329670	TG	CT	5700.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,138:0.87:159
chr11	133800773	rs12796441	C	A	1604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.21;ReadPosRankSum=0.945;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:4,38:0.90:42
chr11	133800773	.	CCG	ACA	1350	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=27;MQ=60.0;NF=28;NR=6;PP=1350;QD=41.2784669077;SC=GGAAGGGAGCCCGCAGAGTGC;SbPval=0.82;Source=Platypus;TC=42;TCF=32;TCR=10;TR=34;WE=133800783;WS=133800771;set=Platypus	GT:AD:AF:DP	1/0:8,34:0.81:42
chr11	133800775	rs11223628	G	A	1604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.66;ReadPosRankSum=1.999;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:5,40:0.89:45
chr11	133805440	rs139927942	AGCCT	A	1062.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr11	133805585	rs329637	C	T	3259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.374;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.734;QD=18.21;ReadPosRankSum=2.034;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:37,142:0.79:179
chr11	133807819	rs329635	G	A	5620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=4.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.15;ReadPosRankSum=1.757;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:38,241:0.86:279
chr11	133814191	rs595986	A	G	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:38,107:0.74:145
chr11	133940197	rs35590990	G	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.066;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr11	134009860	rs2276266	T	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-1.479;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:244,53:0.18:297
chr11	134010722	rs646998	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.772;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:86,14:0.14:100
chr11	134013982	rs145515548	CAA	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.974;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.530;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=2.183;QD=3.13;ReadPosRankSum=-2.690;SOR=0.054;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr11	134014673	rs3216140	C	CCT	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.569;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.288;QD=4.21;ReadPosRankSum=2.086;SOR=1.823;set=HC	GT:AD:AF:DP	0/1:87,17:0.16:104
chr11	134018656	rs610382	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=0.238;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:237,33:0.12:270
chr11	134018850	.	AACACAC	A,AAC	3128.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.03;MQRankSum=0.046;QD=35.15;ReadPosRankSum=-1.767;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:3,29,57:0.33,0.64:89
chr11	134018980	rs12795060	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.007;QD=0.28;ReadPosRankSum=0.165;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:278,38:0.12:316
chr11	134028447	rs55683807	G	A	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:11,64:0.85:75
chr11	134031836	.	C	CAA	62	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=62;QD=35.0;SC=TTCTGAAAGACAGGCCTCTCC;SbPval=1.0;Source=Platypus;TC=19;TCF=1;TCR=18;TR=3;WE=134031844;WS=134031826;set=Platypus	GT:AD:AF:DP	1/0:16,3:0.16:19
chr11	134054705	rs72431132	TACAC	T,TACACACAC	2507.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=147;set=Intersection	GT:AF:DP	1/2:0.29,0.62:89
chr11	134054711	rs80025556	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=-1.105;QD=0.62;ReadPosRankSum=0.944;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:116,17:0.13:133
chr11	134072616	.	G	GA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.753;QD=1.73;ReadPosRankSum=-2.088;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr11	134072910	rs2305380	C	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	134073154	rs2305378	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:7,44:0.86:51
chr11	134093380	rs139784099	T	A	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:19,113:0.86:132
chr11	134093724	rs12803807	T	C	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.277;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:95,20:0.17:115
chr11	134093888	rs11607699	G	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=9.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.576;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:319,66:0.17:385
chr11	134105030	rs1259022	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr11	134128313	rs11223738	G	T	5995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.72;ReadPosRankSum=1.402;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:52,252:0.83:304
chr11	134151975	rs472287	G	C	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	134152030	rs10791352	G	A	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;MQ=59.61;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	134177275	rs2510356	C	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	134180695	rs526507	G	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	134181101	rs1144218	T	C	7605.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	134182135	rs751719	T	C	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	134182375	rs2509062	G	A	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	134182856	rs1144216	A	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	134183450	rs1144215	T	C	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.22;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	134184141	rs1144214	C	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	134188542	rs481252	T	C	6676.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	134188851	rs5795879	A	AT	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.598;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.117;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:16,59:0.79:75
chr11	134201864	rs3098651	T	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.94;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	134237113	rs10791357	C	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr11	134238389	rs3741100	G	C	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr11	134240142	rs10791358	T	C	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	134241094	rs4937880	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	134251777	rs729687	C	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=6.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.529;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:108,18:0.14:126
chr11	134856661	rs1971950	C	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=1.176;QD=0.41;ReadPosRankSum=-0.055;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:353,53:0.13:406
chr12	176139	rs17852242	A	T	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=1.236;QD=11.23;ReadPosRankSum=1.920;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:44,59:0.57:103
chr12	235022	rs12822449	C	T	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	235126	rs112633842	G	GC	1524.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr12	235128	rs11608642	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr12	235143	rs11610983	G	C	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	247900	rs7313003	G	A	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:134,72:0.35:206
chr12	248202	rs56204927	C	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr12	250130	rs12321262	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr12	250239	rs2291928	A	G	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:131,186:0.59:317
chr12	271022	rs12579600	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	271373	rs4980805	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	271386	rs11307485	CT	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.56;ReadPosRankSum=0.216;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	274572	rs11061700	G	C	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	274647	rs4980859	T	C	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:132,73:0.36:205
chr12	274839	rs2291923	T	C	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:105,46:0.30:151
chr12	275065	rs2291922	A	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:112,53:0.32:165
chr12	280349	rs2291919	C	A	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:186,113:0.38:299
chr12	283642	rs2291917	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr12	284058	rs216230	T	C	22942.77	.	AC=2;AF=1.00;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	1/1:2,841:1.00:843
chr12	301843	rs646569	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	305254	rs533572	T	C	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr12	309753	rs7967868	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chr12	310113	rs4980863	A	G	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr12	310901	rs216248	T	C	1852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.844;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:61,86:0.59:147
chr12	311816	rs216249	C	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	311949	rs216250	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,53:0.69:77
chr12	312200	rs216251	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	319111	rs526690	T	C	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:268,136:0.34:404
chr12	319125	rs557881	A	G	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:230,125:0.35:355
chr12	330315	rs570680	T	G	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:191,79:0.29:270
chr12	347068	rs2289957	T	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr12	351711	rs525797	T	G	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	461269	.	CA	C	84.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=6.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.849;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr12	464254	rs3759371	T	C	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	495217	rs10774152	G	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	496439	rs7965303	A	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	496533	rs10848877	C	T	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	498267	rs3043226	CG	C	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.300;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.739;SOR=2.617;set=HC	GT:AD:AF:DP	0/1:9,45:0.83:54
chr12	537828	rs11062934	G	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	537841	rs35713455	T	TA	642.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr12	539984	rs55854088	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:61,21:0.26:82
chr12	540994	rs7310504	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	547683	rs735295	T	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr12	550911	rs34054482	CT	C	1044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.060;QD=7.98;ReadPosRankSum=-0.865;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:43,88:0.67:131
chr12	619690	rs149058358	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.620;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr12	653984	rs1008587	T	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr12	655707	rs4980937	T	C	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=1.283;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:66,54:0.45:120
chr12	657404	rs11063529	G	A	4786.77	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:596,273:0.31:869
chr12	658871	rs4980939	A	G	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:228,101:0.31:329
chr12	661458	.	TACACACACACACAC	T	1562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=4.332;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.679;QD=22.98;ReadPosRankSum=1.829;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:19,49:0.72:68
chr12	661656	rs7298766	A	G	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:172,107:0.38:279
chr12	661772	rs7314430	G	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:73,29:0.28:102
chr12	662448	rs758790	T	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:183,80:0.30:263
chr12	662838	rs1056008	T	C	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:94,49:0.34:143
chr12	662979	rs200374878	G	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-3.148;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr12	663224	rs11063564	A	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	666023	.	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DP=167;set=Intersection	GT:AD:AF:DP	0/1:52,114:0.69:166
chr12	666943	rs7300933	A	G	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr12	667910	rs12368256	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:63,26:0.29:89
chr12	668350	rs2072385	AC	CT	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;JOINED;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr12	670520	rs149363012	C	T	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:122,76:0.38:198
chr12	670595	rs36078145	G	A	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:71,97:0.58:168
chr12	719681	rs2535405	G	A	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	752327	rs6489690	C	A	6064.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	752998	rs9669247	G	A	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	862641	rs3088353	T	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=13.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.712;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	862989	rs3168640	T	C	8770.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr12	863505	rs11064518	A	C	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:38,83:0.69:121
chr12	863517	rs3858703	G	A	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:75,36:0.32:111
chr12	936468	rs2158502	C	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	939302	rs10774466	A	G	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	966208	rs2240284	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	968400	rs11064573	C	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.239;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:123,55:0.31:178
chr12	968489	rs2286006	T	C	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.280;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:148,52:0.26:200
chr12	970093	rs11286613	CT	C	341.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;MQRankSum=0.436;QD=15.53;ReadPosRankSum=-1.263;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr12	970127	rs7137038	G	T	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=8.116;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.636;QD=13.63;ReadPosRankSum=-2.210;SOR=0.067;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr12	974137	rs11441896	C	CA	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.702;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr12	974308	rs141823469	T	TC	14372.73	.	AC=2;AF=1.00;AN=2;DB;DP=444;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr12	974355	rs11441897	T	TC	5439.73	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:305,193:0.39:498
chr12	974404	rs7300829	T	C	13858.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr12	987482	rs1012729	G	A	6036.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=27.19;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	987533	rs5795952	C	CT	1425.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.651;QD=14.26;ReadPosRankSum=-1.500;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:13,87:0.87:100
chr12	988894	rs9804992	G	A	6886.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:153,302:0.66:455
chr12	990912	rs956868	A	C	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:70,128:0.65:198
chr12	994487	rs7955371	G	C	9559.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr12	995291	rs11450919	G	GT	934.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	999762	rs2255390	A	G	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:71,109:0.61:180
chr12	1017197	rs4766334	C	T	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	1022569	rs4987208	A	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:72,87:0.55:159
chr12	1022679	rs6413436	A	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr12	1035947	rs6489763	C	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	1039335	rs11571420	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr12	1040373	rs7303748	T	C	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	1041981	rs201398506	A	C	462.10	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.67;QD=42.01;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	1041983	rs199628282	A	G	476.94	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.59;QD=39.74;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	1041986	rs200633668	C	G	476.94	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=36.69;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	1041991	.	T	C	521.85	.	AC=2;AF=1.00;ALERT;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.43;QD=37.28;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	1041992	.	A	G	521.85	.	AC=2;AF=1.00;ALERT;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.43;QD=37.28;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	1041993	rs201451927	G	C	521.85	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.43;QD=37.28;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	1041996	rs113084521	A	C	515.94	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.43;QD=36.85;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	1219286	rs7131703	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr12	1221221	rs74679668	T	TAG	536.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	1224917	rs7973282	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr12	1224972	rs7973392	A	C	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=3.258;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr12	1224980	rs61912159	G	A	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=1.273;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:47,37:0.44:84
chr12	1292399	rs111929784	CTA	C	1074.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr12	1313732	rs7977526	T	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:159,81:0.34:240
chr12	1372114	rs2286031	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr12	1589821	rs7315267	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr12	1589868	rs111377772	T	TGAA	876.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr12	1589914	rs7315390	T	C	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.524;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:121,44:0.27:165
chr12	1590013	rs11613546	C	T	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=1.251;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:203,76:0.27:279
chr12	1590069	rs11609462	G	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:166,67:0.29:233
chr12	1675847	rs73030956	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.242;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:81,17:0.17:98
chr12	1703322	.	A	AGCC	2349.73	.	AC=2;AF=1.00;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	1748728	rs58317077	C	T	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	1748766	rs6489313	G	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	1748834	rs2270036	T	C	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	1889823	rs767870	G	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	1889920	rs10848575	TT	AA	554.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.67;ReadPosRankSum=2.461;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr12	1902766	rs2058111	T	G	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	1904726	rs3078853	G	GAC	1118.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	1919543	rs2286377	C	T	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	1937511	rs10437823	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr12	1937551	rs16928794	G	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr12	1943384	rs79174514	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chr12	1950011	rs58188909	A	AC	8271.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	1955664	rs7137553	G	T	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	1955668	rs7138458	C	A	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=2.507;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	1955890	rs7137876	T	C	8591.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr12	1967947	rs2286369	C	G	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	1969262	rs10848582	T	C	9667.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	1993337	rs2429184	T	C	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	1995042	rs10774003	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	1995403	rs10735005	T	C	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	2016550	rs112521420	A	ATTGTC	1346.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	2016938	rs113797488	AGCCTGGTGAGTAT	A	9057.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	2019322	rs8181786	G	A	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	2022411	rs1558142	T	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	2024316	rs758157	A	G	17624.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:2,676:1.00:678
chr12	2224228	rs2299661	C	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	2558186	rs1544514	G	A	4467.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:122,202:0.62:324
chr12	2558298	rs1544515	G	A	6230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.45;ReadPosRankSum=2.375;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:70,157:0.69:227
chr12	2558298	.	GTT	ATC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=4;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=60;NR=85;PP=2944;QD=20;SC=ATCACTGTCTGTTTCTTTCCC;SbPval=0.57;Source=Platypus;TC=209;TCF=88;TCR=121;TR=145;WE=2558308;WS=2558288;set=Platypus	GT:AD:AF:DP	1/0:64,145:0.69:209
chr12	2558300	rs1544516	T	C	6230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=2.074;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:65,154:0.70:219
chr12	2659044	rs34277236	TG	T	5542.73	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:354,179:0.34:533
chr12	2659082	rs11062272	G	T	4587.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:459,252:0.35:711
chr12	2659622	rs12304811	G	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:38,9:0.19:47
chr12	2659848	rs10848675	T	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	2659926	rs77367745	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.665;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	2676683	rs2370602	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr12	2690702	rs11832738	G	A	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	2692186	rs3751254	T	G	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	2695136	rs56291949	C	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr12	2706720	rs215983	G	C	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr12	2714753	rs41276704	G	A	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:84,110:0.57:194
chr12	2743650	rs59658684	A	AT	3037.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.917;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.887;QD=15.42;ReadPosRankSum=-2.178;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:27,170:0.86:197
chr12	2743722	rs57723819	C	CT	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=-0.594;QD=10.48;ReadPosRankSum=2.589;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,33:0.73:45
chr12	2750893	rs2239124	C	T	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	2760965	rs34428885	GA	G	4022.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	2773870	rs45555233	A	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr12	2778272	rs35749666	G	GC	3648.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:64,120:0.65:184
chr12	2783517	rs11062308	G	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.359;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:31,43:0.58:74
chr12	2786115	rs12818148	C	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:48,67:0.58:115
chr12	2787058	rs2302731	C	T	2953.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:63,138:0.69:201
chr12	2789401	rs35692616	C	CA	860.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr12	2789787	rs12299577	A	G	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.18;ReadPosRankSum=-0.688;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chr12	2789787	.	AGC	GGG	1098	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=1;MGOF=0;MMLQ=22;MQ=60.0;NF=6;NR=22;PP=1098;QD=41.1238526737;SC=ATAGAGAAGTAGCAGCTTCCC;SbPval=0.79;Source=Platypus;TC=40;TCF=11;TCR=29;TR=28;WE=2789797;WS=2789777;set=Platypus	GT:AD:AF:DP	0/1:12,28:0.70:40
chr12	2789789	rs12319450	C	G	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.76;ReadPosRankSum=-0.354;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr12	2791205	rs10774054	A	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	2794791	rs11062315	T	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr12	2795119	.	T	TG	909.73	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr12	2795255	rs2270373	C	T	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.262;QD=4.51;ReadPosRankSum=-1.292;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:144,56:0.28:200
chr12	2799987	rs55830098	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr12	2851166	rs55941820	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	2851180	rs55952811	C	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.26;QD=43.13;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	2851185	rs12319038	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.60;QD=45.29;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	2851365	rs4765989	T	C	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	2876636	rs4313632	A	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	2879507	rs144640976	G	A	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:224,101:0.31:325
chr12	2907087	rs41456246	G	A	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:152,80:0.34:232
chr12	2937013	rs4765998	G	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr12	2966098	rs7309114	G	A	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:82,158:0.66:240
chr12	2968169	rs3742076	A	G	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,62:0.66:94
chr12	2968458	rs2215292	T	C	10300.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr12	2994727	rs7310128	A	T	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.438;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.667;QD=13.18;ReadPosRankSum=-0.067;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:22,45:0.67:67
chr12	2996174	rs2907610	A	G	1411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=1.361;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:53,71:0.57:124
chr12	2996211	rs2907609	A	G	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr12	2997058	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=4.278;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.924;QD=0.50;ReadPosRankSum=-0.868;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr12	2997397	rs2907608	G	A	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:115,205:0.64:320
chr12	3017102	rs11062412	G	A	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr12	3017219	rs10848733	A	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	3018675	rs11305670	AT	A	1446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.533;QD=11.86;ReadPosRankSum=-0.075;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:23,99:0.81:122
chr12	3018802	rs35490316	G	C	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.597;QD=4.21;ReadPosRankSum=-0.818;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:132,49:0.27:181
chr12	3031358	rs2302283	T	C	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	3039319	rs10848747	A	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	3040029	rs10848749	C	T	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	3042634	rs145294361	C	T	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:89,171:0.66:260
chr12	3046802	rs33973716	A	G	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.182;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:120,37:0.24:157
chr12	3046964	rs35398310	A	AC	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-1.865;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr12	3047466	rs2074987	G	A	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	3049631	rs2302282	C	T	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:43,111:0.72:154
chr12	3049698	rs998814	T	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:209,99:0.32:308
chr12	3049938	rs1047341	C	T	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:101,65:0.39:166
chr12	3127652	rs2159411	A	G	4786.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.33;ReadPosRankSum=1.782;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:1,188:0.99:189
chr12	3128103	rs71534246	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr12	3128455	rs11062460	A	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr12	3130044	rs71583737	C	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:110,72:0.40:182
chr12	3130938	rs4759380	A	G	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	3131206	rs3741952	T	C	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:64,141:0.69:205
chr12	3131238	rs4759379	A	G	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	3147080	rs3741951	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:133,73:0.35:206
chr12	3149483	rs7294804	A	G	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:94,146:0.61:240
chr12	3310439	rs740776	C	T	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	3310482	rs740775	C	G	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	3315433	rs2058243	A	G	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:90,173:0.66:263
chr12	3387521	rs651196	C	G	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr12	3387555	rs651243	C	T	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:27,79:0.75:106
chr12	3387697	rs16930370	T	C	6126.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:130,283:0.69:413
chr12	3389601	rs66501720	C	T	4784.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:133,220:0.62:353
chr12	3391032	rs564247	T	G	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:49,122:0.71:171
chr12	3392118	rs11611152	C	G	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,82:0.66:124
chr12	3392351	rs632887	A	G	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:135,213:0.61:348
chr12	3409149	rs55979725	G	A	7600.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:139,340:0.71:479
chr12	3409277	rs7306401	C	T	7581.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr12	3490546	rs9804924	T	C	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:31,85:0.73:116
chr12	3490820	rs10848860	T	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr12	3600967	rs757609	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	3647766	rs3741938	C	T	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	3702219	rs4765741	A	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr12	3736567	rs80119105	A	C	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:222,120:0.35:342
chr12	3736745	rs10848894	T	C	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:260,127:0.33:387
chr12	3749874	rs7138453	T	C	3461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=4.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.027;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:81,164:0.67:245
chr12	3750070	rs4766151	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr12	3751046	rs7297853	T	C	4094.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:113,184:0.62:297
chr12	3753975	rs7975304	T	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr12	3757548	rs887304	T	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr12	3757923	rs758530	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr12	3782456	rs55825408	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	3782480	rs56040859	T	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr12	3782647	rs36030417	A	T	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr12	3782701	rs17697920	C	T	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr12	3782779	rs61907258	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr12	3787956	rs242019	A	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	3948718	rs3809251	G	A	6014.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	3982475	rs12823996	C	T	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=4.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=1.321;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:162,59:0.27:221
chr12	3982657	rs4766179	A	G	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	4388084	rs3217805	C	G	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:96,158:0.62:254
chr12	4430547	rs10774222	C	T	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr12	4430561	rs11063080	C	G	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:74,123:0.62:197
chr12	4446116	rs7296163	T	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr12	4461485	rs7133330	G	A	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:73,113:0.61:186
chr12	4537658	rs2970806	G	A	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	4554548	rs7358740	G	C	29862.77	.	AC=2;AF=1.00;AN=2;DB;DP=1120;set=Intersection	GT:AD:AF:DP	1/1:0,1117:1.00:1117
chr12	4626131	rs12831479	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr12	4627414	rs35924298	C	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,70:0.63:111
chr12	4655670	rs2907492	C	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	4657203	rs7314915	A	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	4667887	rs71459908	A	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr12	4667910	rs7308641	A	C	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr12	4671490	rs740059	G	A	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:165,94:0.36:259
chr12	4671611	rs7306848	CG	GA	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr12	4672096	rs7295624	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr12	4672394	rs7299185	T	G	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr12	4677255	rs2240766	T	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,72:0.61:118
chr12	4689963	.	AT	A	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.894;QD=0.48;ReadPosRankSum=0.363;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:119,29:0.20:148
chr12	4697987	rs2041295	A	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.99;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	4697991	rs2041294	AT	GG	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	4700221	rs2302248	G	T	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	4705317	rs3741925	C	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	4708150	rs3741926	T	A	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	4708438	rs202029653	T	TTTG	1301.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=-1.533;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:3,49:0.94:52
chr12	4714008	rs2286576	T	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	4725134	rs7301885	G	A	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	4735737	rs2072358	A	G	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	4736495	rs1990312	C	T	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	4736631	rs11063265	A	G	7905.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr12	4736677	rs11063266	G	C	10079.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr12	4736690	rs10774251	A	G	10548.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr12	4737318	rs7960207	A	G	7368.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr12	4737459	rs2072356	C	T	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	4737715	rs2072355	C	T	8058.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr12	4758188	rs714621	G	C	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	4762871	rs200108366	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.945;SOR=0.076;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr12	4763780	rs3217056	GCA	G	1999.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	4768354	rs7972657	A	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	4768437	rs7958182	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	4771682	rs2267549	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	4779087	rs1009633	A	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	4794351	rs2240760	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:75,24:0.24:99
chr12	4830000	rs10849133	T	G	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-1.603;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:23,53:0.70:76
chr12	4835882	rs2286578	T	G	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:71,117:0.62:188
chr12	4853806	rs34776842	A	G	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,66:0.65:101
chr12	4853915	rs12312983	T	G	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,50:0.68:73
chr12	4870363	rs2191157	G	A	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:55,62:0.53:117
chr12	4873163	rs1468556	G	T	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:56,100:0.64:156
chr12	4881766	rs2286581	C	T	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.82;ReadPosRankSum=2.562;SOR=1.568;set=HC	GT:AD:AF:DP	0/1:11,34:0.76:45
chr12	4881775	rs2286582	T	C	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.41;ReadPosRankSum=0.912;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,31:0.86:36
chr12	4919267	rs758534	A	G	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:16,47:0.75:63
chr12	4959874	rs10774275	T	C	2719.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:84,124:0.60:208
chr12	4959904	rs34855288	G	GA	3288.73	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:109,150:0.58:259
chr12	4959987	rs10774276	C	T	7280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.172;QD=23.19;ReadPosRankSum=1.368;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:127,187:0.60:314
chr12	4959993	rs3168377	C	A	7239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.141;QD=24.21;ReadPosRankSum=0.221;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:117,182:0.61:299
chr12	4960023	rs14054	C	A	3416.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:93,152:0.62:245
chr12	4960089	rs700480	T	C	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:42,71:0.63:113
chr12	4960117	rs12336	T	C	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr12	5021228	rs1048500	T	C	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:321,188:0.37:509
chr12	5021348	rs2227910	G	C	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:195,103:0.35:298
chr12	5021984	rs4766309	T	A	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:251,109:0.30:360
chr12	5022041	rs4766310	G	A	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=4.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=1.696;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:215,103:0.32:318
chr12	5153694	rs45504599	C	T	2377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=4.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.730;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:340,161:0.32:501
chr12	5154462	rs2359641	T	C	10328.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,377:1.00:378
chr12	5603632	rs6332	G	A	10065.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:220,446:0.67:666
chr12	5721962	rs3741837	A	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	5756783	rs2277400	C	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr12	5756795	rs444834	T	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr12	5756824	rs367978	C	T	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	5757029	rs367206	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr12	5841841	rs2277401	G	C	5750.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:166,248:0.60:414
chr12	5848963	rs57224730	ACT	A	3515.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;MQ=60.31;set=Intersection	GT:AD:AF:DP	0/1:110,95:0.46:205
chr12	5860179	rs2277402	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	5961048	rs7485945	G	A	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	6032129	rs12817045	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.53;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	6032138	rs12817050	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=42.44;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	6054277	rs6416321	G	A	8023.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	6054395	rs6489680	A	G	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr12	6055132	rs6489682	T	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	6061414	.	C	T	570.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr12	6078616	rs2270239	T	G	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:42,97:0.70:139
chr12	6085513	rs216855	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr12	6091000	rs216867	A	G	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	6092442	rs55867239	G	A	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:63,112:0.64:175
chr12	6092567	rs138350612	G	GGATAGATAGATAGATA,GGATAGATAGATA	628.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=48;set=Intersection	GT:AF:DP	1/1:1.00:13
chr12	6094124	rs144331815	AAC	A	674.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	6094784	rs1053523	T	C	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:84,102:0.55:186
chr12	6094845	rs177702	G	A	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	6103844	rs17491334	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr12	6121078	rs216305	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr12	6126145	.	C	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=1.224;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr12	6127943	rs216310	A	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=22.650;MLEAC=1;MLEAF=0.500;MQ=51.53;MQRankSum=-6.522;QD=3.15;ReadPosRankSum=-0.968;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:138,42:0.23:180
chr12	6128443	rs216311	T	C	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:127,72:0.36:199
chr12	6128984	rs216312	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	6134715	rs73051263	G	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr12	6134949	rs56121649	C	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr12	6134987	rs56068059	C	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr12	6135265	rs34877178	C	T	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:67,112:0.63:179
chr12	6135337	rs3858686	G	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr12	6138410	rs11063999	T	C	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.242;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.194;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:40,54:0.57:94
chr12	6138595	rs1800380	C	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr12	6143984	rs216321	T	C	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr12	6144138	rs12810426	G	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr12	6144164	rs499648	T	C	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.28;SOR=2.655;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	6144169	rs669667	T	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=2.786;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	6145529	rs216325	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,36:0.44:82
chr12	6153514	rs1063857	A	G	9127.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:129,242:0.65:371
chr12	6153534	rs1063856	T	C	9191.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:129,240:0.65:369
chr12	6153659	rs216293	G	T	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.022;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=2.191;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:72,49:0.40:121
chr12	6153738	rs1558519	AC	GT	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr12	6153750	rs216294	A	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	6161963	rs10622633	G	GAGA	5210.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=44.16;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	6167196	rs1800379	A	G	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:70,146:0.68:216
chr12	6172202	rs1800378	T	C	6719.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	6172348	rs2239159	C	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr12	6204902	rs5796209	CA	C	1055.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	6230288	rs6489694	A	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	6232426	rs2286608	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:77,30:0.28:107
chr12	6344600	rs2072372	C	A	4427.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:122,201:0.62:323
chr12	6345199	rs3181300	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr12	6352292	rs9668222	T	A	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	6421495	rs740842	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-2.009;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:72,31:0.30:103
chr12	6421571	rs200075801	G	A	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr12	6422272	rs10849440	T	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	6424577	rs1003563	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr12	6427052	rs1468603	C	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=2.497;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:131,53:0.29:184
chr12	6428116	rs4764497	T	G	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:205,100:0.33:305
chr12	6428621	rs12828469	A	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.055;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:37,30:0.45:67
chr12	6435474	rs141921783	AAAT	A	231.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	6435571	rs10849441	A	G	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=1.683;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:81,38:0.32:119
chr12	6435575	rs10849442	C	T	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=1.585;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:84,39:0.32:123
chr12	6435753	rs2302350	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr12	6437171	rs3067490	T	TGG	2295.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:126,68:0.35:194
chr12	6439255	rs10849443	A	G	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	6439470	rs12426675	A	G	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:71,125:0.64:196
chr12	6442346	rs1800692	A	G	2674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.315;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:60,122:0.67:182
chr12	6457062	rs2228576	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr12	6458084	rs3764875	C	T	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	6463862	rs11614164	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr12	6483463	rs3741914	T	C	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	6484709	rs10849447	T	C	2666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=1.835;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:63,128:0.67:191
chr12	6495070	rs4020662	C	CAA	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=10.307;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-1.322;QD=7.16;ReadPosRankSum=-1.388;SOR=3.538;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr12	6495275	rs2364480	C	A	3816.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:91,166:0.65:257
chr12	6495635	rs5796232	C	CGG	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.553;SOR=1.571;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	6500105	rs12354	T	G	4040.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:84,177:0.68:261
chr12	6551899	rs2886090	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr12	6552154	rs3759341	A	G	72.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.40;ReadPosRankSum=1.180;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	6560473	rs2532502	A	G	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	6560573	rs1059501	G	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr12	6562382	rs146581116	G	A	5387.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:123,233:0.65:356
chr12	6562753	rs2532501	A	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:81,62:0.43:143
chr12	6562810	rs2532500	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr12	6565750	rs10774432	A	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.931;QD=5.76;ReadPosRankSum=-0.724;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:60,32:0.35:92
chr12	6567541	.	T	TA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.312;QD=0.98;ReadPosRankSum=-2.765;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr12	6570163	rs2534710	C	T	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:91,62:0.41:153
chr12	6572048	rs1045452	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:131,69:0.34:200
chr12	6572191	rs12964	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr12	6574523	rs10623425	AGT	A	397.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	6574539	rs10849461	A	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.980;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.283;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr12	6575191	rs2534718	A	T	5497.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	6579565	rs2534720	A	G	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	6579757	rs2532489	T	C	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr12	6579812	rs2072376	T	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:79,38:0.32:117
chr12	6601743	rs1001127	A	C	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	6601980	rs4764600	C	G	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:96,131:0.58:227
chr12	6604418	rs6489718	C	T	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:69,101:0.59:170
chr12	6618871	rs7309414	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:174,81:0.32:255
chr12	6619054	rs7298053	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:77,52:0.40:129
chr12	6619081	rs144245376	TCTA	T	2457.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:36,62:0.63:98
chr12	6619284	rs714774	C	G	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	6619402	rs714775	T	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:129,90:0.41:219
chr12	6620495	rs7358768	G	T	2445.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=13.696;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.226;QD=27.18;ReadPosRankSum=1.164;SOR=2.780;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chr12	6623382	rs4764604	A	G	2049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.126;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=5.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=0.051;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:42,73:0.63:115
chr12	6623389	rs4764605	T	C	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.55;SOR=3.667;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	6624139	rs9788151	T	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr12	6626369	rs758739	G	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	6631169	rs917634	C	A	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	6631888	rs2072373	G	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr12	6632564	.	G	GTTTTTTTT	50.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.55;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	6635567	rs7311174	A	T	13978.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr12	6637845	rs2072374	T	C	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	6638116	rs740850	C	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:50,77:0.61:127
chr12	6638666	rs7316224	C	T	7047.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:213,317:0.60:530
chr12	6639088	rs1043262	A	G	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	6639981	rs2240871	C	G	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:182,82:0.31:264
chr12	6640267	rs10849485	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	6640676	rs1043271	T	A	172.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-1.848;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	6640677	rs1127198	T	A	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.40;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	6643927	rs3741915	T	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=0.737;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:67,33:0.33:100
chr12	6643991	rs1136666	C	G	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.552;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:133,52:0.28:185
chr12	6644256	rs3741918	T	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr12	6646320	rs1065691	T	C	2309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.608;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-1.487;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:211,130:0.38:341
chr12	6647109	rs1803621	T	C	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.265;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:85,41:0.33:126
chr12	6657538	rs2286724	T	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr12	6659694	rs2286726	G	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr12	6660219	rs7312991	C	T	4292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=1.143;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:256,123:0.32:379
chr12	6660225	rs7301426	T	C	4233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=1.421;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:251,121:0.33:372
chr12	6690653	rs77843719	G	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:128,75:0.37:203
chr12	6697353	rs12310569	G	A	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr12	6709945	rs12816349	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr12	6711147	rs1639122	C	A	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:148,76:0.34:224
chr12	6747578	rs1882553	G	C	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr12	6749093	rs2365087	A	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	6756240	rs3803130	A	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	6762026	rs4764506	T	C	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	6764831	rs4764616	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	6777069	rs3835029	TTGC	T	3535.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:62,116:0.65:178
chr12	6804902	rs10849498	A	G	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	6835068	rs7487866	A	G	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:117,60:0.34:177
chr12	6835081	rs2365100	G	A	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:93,54:0.37:147
chr12	6836852	rs7138427	A	G	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:289,126:0.30:415
chr12	6836913	rs2178691	G	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:186,74:0.28:260
chr12	6839453	rs871365	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr12	6840209	rs3168600	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:117,55:0.32:172
chr12	6840371	rs11227	G	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:110,57:0.34:167
chr12	6861043	rs2302367	T	C	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:41,104:0.72:145
chr12	6879202	rs4764622	T	C	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:49,121:0.71:170
chr12	6879279	rs4764621	A	G	4532.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:69,202:0.75:271
chr12	6883670	rs2365094	G	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr12	6883700	rs2365095	C	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	6909380	rs3216776	TG	T	1831.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:117,60:0.34:177
chr12	6909388	rs2365568	A	G	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	6909442	rs2255301	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:127,75:0.37:202
chr12	6924718	rs3782736	C	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr12	6925149	rs10744715	C	T	3057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.978;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.404;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:433,179:0.29:612
chr12	6926363	rs1055141	T	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:92,44:0.32:136
chr12	6927470	rs12226953	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr12	6928075	rs12821756	T	C	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:115,62:0.35:177
chr12	6928135	rs55764611	T	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.64;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	6928136	rs2071077	A	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.438;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr12	6928586	rs7136817	CA	AG	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	6933787	rs1051409	A	G	1958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.306;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.614;QD=5.18;ReadPosRankSum=-1.665;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:273,105:0.28:378
chr12	6935977	rs11612427	A	G	5286.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:107,213:0.67:320
chr12	6938023	rs57050687	C	CG	2087.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	6939850	rs10744716	A	G	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:114,111:0.49:225
chr12	6940254	rs7305463	A	G	4882.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:101,194:0.66:295
chr12	6942672	rs4963513	A	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,56:0.62:91
chr12	6942823	rs4963512	A	G	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:105,199:0.65:304
chr12	6946545	rs4963510	C	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:24,71:0.75:95
chr12	6948028	rs4963516	T	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr12	6948049	.	G	A	997.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr12	7026893	rs376463507	A	AG	1172.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	7044647	rs367827860	A	AG	3066.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	7046745	rs12426246	G	C	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	7053362	rs915997	A	G	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr12	7053908	rs744167	C	T	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	7054859	rs2019743	G	A	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	7055860	rs2301262	T	C	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	7065281	rs10744724	C	T	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	7065406	rs7963446	G	A	5937.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	7065576	rs2110071	G	A	8316.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	7065635	rs2110072	T	C	8920.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	7069422	rs35119590	TG	T	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.190;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:111,20:0.15:131
chr12	7069425	rs28579154	G	C	2095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.361;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:39,97:0.71:136
chr12	7069426	.	G	C	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=7.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.089;SOR=0.198;set=HC	GT:AD:AF:DP	0/1:114,25:0.18:139
chr12	7069620	rs759052	T	C	10657.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr12	7069654	rs759053	G	A	7525.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr12	7079215	rs7301709	T	G	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	7080210	rs60117710	A	AG	3878.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	7080212	rs17857448	T	C	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	7090659	rs60570787	A	AG	4841.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	7242299	rs1801046	G	A	8588.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr12	7242953	rs4505141	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr12	7244956	rs12422724	A	T	21047.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr12	7244962	rs12426834	T	G	21104.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr12	7246581	rs56876910	T	TTG,TTGTG	950.74	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=57;set=Intersection	GT:AF:DP	0/1:0.89:36
chr12	7249598	rs3742089	T	C	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=5.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-1.059;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:192,93:0.33:285
chr12	7254787	rs1075425	C	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr12	7260825	rs35898229	A	AC	3058.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:51,126:0.71:177
chr12	7277236	rs2290237	T	A	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=4.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.160;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:109,39:0.26:148
chr12	7283134	rs71445143	T	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr12	7284301	rs2167285	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	7284484	rs10772466	A	C	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	7287886	rs6488452	A	C	6555.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chr12	7287914	rs2278822	C	T	8900.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr12	7290391	.	T	TGA	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-0.198;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	7294657	.	GTT	G,GT	1624.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=1.761;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=1.735;SOR=0.626;set=HC	GT:AD:AF:DP	1/2:26,39,80:0.27,0.55:145
chr12	7309006	rs142936286	G	A	4569.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:120,206:0.63:326
chr12	7309199	rs7296261	G	A	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:296,158:0.35:454
chr12	7309471	rs1868799	C	A	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.36;SOR=2.389;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	7309471	.	CGG	AGC,AGG	1618	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.25;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=6,27;NR=28,87;PP=569,1618;QD=18.3078786724;SC=CCAGACGTCCCGGAGCCCCAA;SbPval=0.8;Source=Platypus;TC=115;TCF=27;TCR=88;TR=34,114;WE=7309481;WS=7309461;set=Platypus	GT:AF:DP	0/1:0.30:115
chr12	7309473	rs1868800	G	C	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.365;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-1.011;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:93,46:0.33:139
chr12	7309613	rs11608952	C	T	537.89	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:2,21:0.91:23
chr12	7351780	rs73050080	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr12	7351805	rs142459941	C	CTT	247.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=22.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	7351843	rs1839623	T	C	150.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	7355898	rs4883087	C	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	7360143	rs3825405	C	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	7362204	.	G	T	1337	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=27;MQ=60.0;NF=50;NR=27;PP=1337;QD=17.8152105526;SC=CAGAGTTTGAGCTGAGTCGGT;SbPval=0.1;Source=Platypus;TC=107;TCF=80;TCR=27;TR=77;WE=7362212;WS=7362194;set=Platypus	GT:AD:AF:DP	0/1:30,77:0.72:107
chr12	7362204	rs141721291	G	GCTGAGTCGGTGGAGTAATGTGCAGAGTTTGAT	3948.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=80.59;SOR=4.935;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	7463241	rs7968241	A	T	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	7463491	rs7962994	C	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	7470534	rs7968312	A	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	7477298	rs10743732	G	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	7521563	rs148414953	TGA	T	111.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr12	7525795	rs10845007	C	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	7525865	rs11053518	G	C	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	7551022	rs6488268	A	T	19370.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr12	7551050	rs6488269	A	C	20609.77	.	AC=2;AF=1.00;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	1/1:0,750:1.00:750
chr12	7585971	rs10845159	A	G	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:102,141:0.58:243
chr12	7591644	.	A	G	1591.77	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr12	7591911	.	C	T	266.77	.	AC=1;AF=0.500;AN=2;DP=49;MQ=59.61;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr12	7592035	rs10772330	G	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	7592139	rs10772331	G	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	7596855	rs7954905	T	C	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	7638020	rs10743939	G	A	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	7649484	rs4883263	T	C	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	7649653	rs4883264	T	C	9420.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr12	7655137	rs3210140	A	G	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	7655278	rs11836971	T	A	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	7803562	rs10431308	C	A	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	7803646	rs10431309	G	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:64,87:0.58:151
chr12	7805236	rs2302515	C	G	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	7805467	rs2080127	C	T	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	7805508	rs112046539	CTTTT	C	1061.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=64.44;MQRankSum=0.000;QD=24.13;ReadPosRankSum=0.843;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr12	7805511	rs5796282	T	TA	373.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.60;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.869;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	7807138	rs10845624	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr12	7818348	rs71038713	GACACACACACACACAC	G,GAC	2089.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=9.082;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.328;QD=33.71;SOR=1.447;set=HC	GT:AD:AF:DP	1/2:4,24,34:0.39,0.55:62
chr12	7842932	rs12819884	C	T	2568.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:57,110:0.66:167
chr12	7843373	rs3815479	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	7847940	rs6488591	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	7864316	.	CTTTTTTTTTTTT	C	1389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=28.759;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.571;QD=32.32;ReadPosRankSum=1.954;SOR=4.396;set=HC	GT:AD:AF:DP	0/1:5,38:0.88:43
chr12	7867847	rs2024320	G	C	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	7868777	rs34619457	A	ATT	1490.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	7868865	rs34547953	C	CTTT	484.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.93;ReadPosRankSum=-0.134;SOR=1.250;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr12	7894056	rs73056605	G	A	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:233,127:0.35:360
chr12	7894132	rs80204298	GA	G	1408.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:111,55:0.33:166
chr12	7894188	rs73056607	C	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr12	7898824	rs7134479	A	G	1376.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.50;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	7917994	.	G	A	159.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr12	7942472	rs12826131	AG	GA	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;JOINED;set=Intersection	GT:AD:AF:DP	0/1:79,45:0.36:124
chr12	7942514	rs12816791	C	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr12	7942556	rs12821889	G	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	7945640	rs2889551	G	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr12	7945670	rs4354764	G	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.347;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=5.698;MLEAC=1;MLEAF=0.500;MQ=45.90;MQRankSum=-4.252;QD=6.15;ReadPosRankSum=0.365;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:86,35:0.29:121
chr12	7945757	rs4438116	C	T	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:298,146:0.33:444
chr12	7945829	rs4242903	G	C	11481.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr12	7945871	rs11831829	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:171,73:0.30:244
chr12	7945916	rs34261320	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,39:0.35:110
chr12	7945927	rs58791167	A	G	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr12	7947017	rs1860931	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-2.174;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr12	7947304	rs4012939	T	C	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.648;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-14.303;QD=3.67;ReadPosRankSum=0.221;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:281,89:0.24:370
chr12	7966958	rs10845981	C	T	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:115,128:0.53:243
chr12	7967135	rs11055945	T	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr12	7970347	.	T	TATAGATAGATAG	674.73	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr12	7970721	rs10845990	T	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	7980035	rs10846003	T	C	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	7980306	rs56049529	T	TA	2638.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	7982753	rs202204123	CTT	C,CT	939.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.49;ReadPosRankSum=-0.882;SOR=2.252;set=HC	GT:AD:AF:DP	1/2:1,28,11:0.70,0.28:40
chr12	7984447	rs10772787	G	A	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	7985460	rs17728008	T	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=2.318;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:108,58:0.35:166
chr12	8043471	rs138036071	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr12	8043688	rs7297809	G	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	8074192	rs25684	G	A	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:86,58:0.40:144
chr12	8075685	rs741361	A	G	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,50:0.77:65
chr12	8082367	rs17847967	T	C	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:113,71:0.39:184
chr12	8088766	rs2541281	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	8090271	rs11056574	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	8090317	rs56224202	CAA	C	470.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=-0.911;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr12	8090505	rs12321738	C	G	213.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr12	8196445	rs2277414	T	G	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	8203273	rs17801353	T	G	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:38,90:0.70:128
chr12	8203400	rs61922169	G	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr12	8235172	rs66928724	GT	G	1042.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:13,61:0.82:74
chr12	8245239	rs2231750	C	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr12	8248367	rs2231754	T	C	2779.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:67,123:0.65:190
chr12	8276432	rs7295783	C	T	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	8278181	rs2024301	A	T	4774.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:172,218:0.56:390
chr12	8286762	rs7315526	G	C	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr12	8287048	rs11043498	C	T	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:49,81:0.62:130
chr12	8288098	rs10840746	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr12	8289226	rs4322490	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr12	8289300	rs4573763	T	C	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:39,98:0.72:137
chr12	8374770	rs9668474	G	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	8374781	rs71265055	C	CACG	304.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	8374812	rs17855656	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	8543143	rs4403873	T	A	159.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	8608482	rs369358959	G	GTTTT	183.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.77;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	8608502	rs4628756	T	A	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	8608583	rs4528410	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	8612336	rs10770736	G	C	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	8612481	rs12300621	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.57;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	8617976	rs7302011	A	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=5.211;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	8617982	rs7315873	G	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.49;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	8693240	rs5014225	C	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.84;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	8693245	.	A	AC	1654.73	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr12	8693333	rs4620776	G	A	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	8693418	rs11834597	T	C	74.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr12	8693419	rs145952293	T	TTCTC	639.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	8756791	rs11046349	T	G	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:44,74:0.63:118
chr12	8759445	rs2518144	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:99,50:0.34:149
chr12	8765447	rs1345004	T	C	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	8813345	rs35362262	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.862;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr12	8850706	rs112263725	G	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr12	8926011	rs2969089	T	C	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	8988403	rs4883188	A	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	8988777	rs1894814	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	8989916	rs11047510	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr12	8990813	rs10743504	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	9002920	rs184546046	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr12	9004512	rs1860927	G	A	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	9004667	rs4882965	G	C	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr12	9004892	rs1860926	C	A	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	9007225	rs6144605	GAGTTCTTCTGAGCTTC	G	774.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	9008318	rs1468711	G	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	9009835	rs202179061	T	C	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr12	9010056	rs187603560	T	C	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr12	9013755	rs1860967	C	T	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	9016573	rs10219561	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	9020489	rs7308811	A	G	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	9020912	rs1476910	A	G	7309.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	9021018	rs150983014	TTG	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.278;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:75,9:0.11:84
chr12	9021053	rs5796325	C	CGT,CGTGT	2545.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;set=Intersection	GT:AF:DP	1/2:0.15,0.82:66
chr12	9021256	rs12816475	C	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr12	9021316	rs10664353	T	TAC	850.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr12	9068472	rs10771204	G	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	9068813	rs7304121	C	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	9070366	rs4883198	T	A	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	9074259	rs1805741	C	T	10603.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr12	9082855	rs1805778	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	9083336	rs1805777	A	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.95;QD=33.88;SOR=2.780;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	9085788	rs201210657	C	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.606;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=1.249;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr12	9086683	rs1805735	A	T	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	9086898	rs1049925	A	G	10961.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:12,398:0.97:410
chr12	9087906	rs113120861	ATAG	A	1656.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	9090086	rs12371786	G	A	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	9094548	rs1805765	A	G	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr12	9097933	rs1805725	C	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	9142297	rs1805723	T	C	8982.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr12	9161407	rs61915986	A	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=-0.106;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr12	9161411	rs7302472	C	A	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.74;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	9161648	rs3026251	T	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:40,74:0.65:114
chr12	9161804	rs3741854	C	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	9205540	rs2216143	T	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.354;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr12	9223242	rs16917971	A	C	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,31:0.37:84
chr12	9242623	rs11609582	A	T	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:126,71:0.36:197
chr12	9246176	rs3832852	CTATGG	C	1531.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:115,46:0.29:161
chr12	9248233	rs226405	T	C	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	9253894	rs226397	C	T	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	9254385	rs11613746	T	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	9256708	rs226390	C	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr12	9258821	rs12427063	A	G	3075.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:85,138:0.62:223
chr12	9260280	rs226388	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr12	9262727	rs226386	T	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr12	9268473	rs226380	A	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.451;SOR=1.907;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr12	9303440	rs3741851	A	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr12	9305473	rs10771357	T	C	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	9307373	rs2377741	T	G	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	9310565	rs4882981	C	T	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	9310575	rs200837969	GT	G	774.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr12	9310576	rs10771364	T	G	899.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr12	9310959	rs7298673	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	9311177	rs79525982	G	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr12	9311265	rs3741850	A	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	9312951	rs57006764	G	A	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=5.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.442;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:205,86:0.30:291
chr12	9313510	.	C	CA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.744;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr12	9313517	rs200870789	AT	A	67.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.230;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr12	9313518	rs7972015	T	A	1009.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=15.78;ReadPosRankSum=0.262;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:15,49:0.77:64
chr12	9315209	rs10771381	A	G	3242.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:108,144:0.57:252
chr12	9316773	rs3213831	T	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:73,136:0.65:209
chr12	9316907	rs1863839	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr12	9317784	rs2277413	A	G	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=56.33;MQRankSum=0.372;QD=3.61;ReadPosRankSum=-0.731;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:220,72:0.25:292
chr12	9317885	rs2277412	G	A	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:53,100:0.65:153
chr12	9333749	rs919209	G	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:114,53:0.32:167
chr12	9334728	rs3832849	G	GAGTGAGACAAAATGGTCATA	4325.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	9344878	rs2075394	A	G	6483.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	9345273	rs10771407	A	G	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	9345408	rs2075395	A	G	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	9346792	rs12230214	G	C	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	9349370	rs11049396	C	CT	1294.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr12	9352908	rs6487668	C	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr12	9356603	rs78952243	T	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,45:0.61:74
chr12	9446913	rs61916248	C	T	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.74;QD=26.64;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	9446932	rs61916249	G	C	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.76;QD=27.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	9446977	rs3874129	G	C	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr12	9447347	.	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.88;MQRankSum=-0.372;QD=2.82;ReadPosRankSum=1.990;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr12	9447484	rs77482466	C	T	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.500;MQ=54.12;MQRankSum=-7.491;QD=10.30;ReadPosRankSum=0.207;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr12	9447488	rs75114985	C	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.620;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-7.257;QD=10.40;ReadPosRankSum=-0.131;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr12	9450357	rs375411540	A	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.10;QD=26.64;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	9450594	rs61916255	C	T	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.03;QD=39.83;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	9450603	rs142596611	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.14;QD=42.75;SOR=6.518;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	9451370	rs200995345	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.698;MLEAC=1;MLEAF=0.500;MQ=50.98;MQRankSum=-5.278;QD=0.61;ReadPosRankSum=0.200;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:158,28:0.15:186
chr12	9451397	rs74390404	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=52.97;MQRankSum=-5.643;QD=0.52;ReadPosRankSum=0.374;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:222,38:0.15:260
chr12	9452062	rs75887043	A	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.50;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9453726	rs61917369	G	A	1397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.47;MQRankSum=3.114;QD=34.94;ReadPosRankSum=0.475;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:7,33:0.82:40
chr12	9453743	rs28415351	C	A,G	2076.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.94;QD=32.96;SOR=1.926;set=HC	GT:AD:AF:DP	1/2:0,52,11:0.83,0.17:63
chr12	9453864	rs61917370	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:104,41:0.28:145
chr12	9455342	rs80134739	A	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:45,61:0.58:106
chr12	9455428	rs11050141	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	9456640	rs201046098	C	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.73;QD=30.64;SOR=6.229;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	9456729	rs11050148	T	C	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.61;QD=28.65;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	9456838	rs10843357	G	A	6751.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;MQRankSum=-0.249;QD=26.07;ReadPosRankSum=-0.739;SOR=0.353;set=HC	GT:AD:AF:DP	1/1:1,258:1.00:259
chr12	9458412	rs10743653	G	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.48;QD=30.55;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	9458891	rs370295997	A	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:188,44:0.19:232
chr12	9459854	rs9971685	G	C	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-7.307;QD=4.20;ReadPosRankSum=-1.563;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:176,63:0.26:239
chr12	9459898	rs2911825	G	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-8.199;QD=1.46;ReadPosRankSum=-0.850;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:114,20:0.15:134
chr12	9462680	.	GTAA	G	1455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.52;MQRankSum=-4.332;QD=26.00;ReadPosRankSum=-1.027;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:20,36:0.64:56
chr12	9462681	.	T	TGCC	2125	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=3;HapScore=2;MGOF=17;MMLQ=24;MQ=51.72;NF=3;NR=14;PP=2125;QD=129.469073906;SC=TTTCTGTGGGTAATACCTCAT;SbPval=0.75;Source=Platypus;TC=40;TCF=9;TCR=31;TR=17;WE=9462694;WS=9462671;set=Platypus	GT:AD:AF:DP	0/1:23,17:0.42:40
chr12	9462685	.	A	G	1545.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-4.385;QD=27.60;ReadPosRankSum=-1.212;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr12	9462686	.	C	CCGTTTT	1536.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.26;MQRankSum=-4.389;QD=26.50;ReadPosRankSum=-1.007;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:20,38:0.66:58
chr12	9462709	rs2889720	A	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	9463010	rs4883234	C	G	11457.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr12	9463077	rs10771513	A	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:109,62:0.36:171
chr12	9463105	rs11050177	A	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr12	9463774	rs55809356	G	T	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr12	9463806	rs10771515	T	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	9464060	rs12822747	G	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.829;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-5.987;QD=4.04;ReadPosRankSum=-1.035;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr12	9464109	rs12824979	A	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:89,61:0.41:150
chr12	9464126	rs201695391	A	G	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:125,97:0.44:222
chr12	9464133	rs10843383	C	G	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.523;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.24;MQRankSum=4.261;QD=2.08;ReadPosRankSum=0.053;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:208,41:0.16:249
chr12	9464178	rs112191067	G	A	2549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.873;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=3.704;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-9.799;QD=4.57;ReadPosRankSum=-0.104;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:396,162:0.29:558
chr12	9464241	rs61917427	C	A	3724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.948;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=7.606;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-19.279;QD=4.72;ReadPosRankSum=1.793;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:531,258:0.33:789
chr12	9464271	.	C	CGTT	4868.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DP=740;ExcessHet=3.0103;FS=7.769;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-22.183;QD=6.76;ReadPosRankSum=-1.185;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:561,159:0.22:720
chr12	9464828	rs12581470	C	T	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-0.005;QD=12.91;ReadPosRankSum=1.295;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:52,79:0.60:131
chr12	9465424	rs200926727	A	AG	744.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-14.380;QD=2.70;ReadPosRankSum=-1.223;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:225,51:0.18:276
chr12	9465872	rs4012572	G	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	9549634	rs11308534	AG	A	171.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	9554981	rs373544091	A	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.619;MLEAC=1;MLEAF=0.500;MQ=45.41;MQRankSum=-0.462;QD=13.82;ReadPosRankSum=-1.142;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	9555110	rs12821647	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.68;QD=28.46;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	9555175	rs374009125	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=52.14;MQRankSum=-2.904;QD=1.49;ReadPosRankSum=1.340;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:59,14:0.19:73
chr12	9555185	rs72475431	A	G	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.29;MQRankSum=-5.101;QD=17.09;ReadPosRankSum=3.133;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:39,33:0.46:72
chr12	9555195	rs58903301	T	TC	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=53.36;MQRankSum=-3.724;QD=9.38;ReadPosRankSum=4.968;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr12	9555201	rs199717489	C	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=53.17;MQRankSum=-3.252;QD=5.22;ReadPosRankSum=1.436;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr12	9571547	rs61916776	C	G	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	9571599	rs73242993	C	A	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr12	9571670	rs77617533	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	9572244	rs7305608	A	G	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	9572754	rs55665529	C	T	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:235,104:0.31:339
chr12	9572788	rs145731114	C	CGCACCTGGAT	4398.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr12	9572819	rs10843740	C	T	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.445;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=40.18;MQRankSum=0.320;QD=17.11;ReadPosRankSum=0.926;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:20,40:0.67:60
chr12	9572871	rs10843741	T	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	9573130	rs7358608	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	9573224	rs7358609	C	T	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=4.099;QD=17.31;ReadPosRankSum=-0.195;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:19,70:0.79:89
chr12	9573291	rs67766754	AAGGG	A	1264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.287;MLEAC=1;MLEAF=0.500;MQ=63.12;MQRankSum=3.967;QD=32.43;ReadPosRankSum=4.120;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr12	9573308	.	AG	A	1813	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=4;HapScore=2;MGOF=22;MMLQ=28;MQ=53.67;NF=2;NR=16;PP=1813;QD=102.166666667;SC=GGAGGGAGGGAGCCCCCATGG;SbPval=0.57;Source=Platypus;TC=19;TCF=2;TCR=17;TR=18;WE=9573317;WS=9573269;set=Platypus	GT:AD:AF:DP	1/0:1,18:0.95:19
chr12	9573309	.	G	GCCC	1537.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.68;QD=43.94;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	9573338	rs4763950	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.43;QD=49.64;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	9574002	rs10771709	C	T	9198.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=26.90;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr12	9574042	rs7298124	C	A	6901.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:188,316:0.63:504
chr12	9574119	rs4764050	A	G	11408.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr12	9574344	rs4237949	T	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	9574480	rs7132464	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.59;QD=31.04;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	9577013	rs61914669	C	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	9577027	rs3825308	C	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr12	9577310	rs7296629	A	C	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	9577992	rs201150453	C	T	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.981;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.363;MLEAC=1;MLEAF=0.500;MQ=45.65;MQRankSum=-1.886;QD=12.01;ReadPosRankSum=-0.871;SOR=1.824;set=HC	GT:AD:AF:DP	0/1:37,31:0.46:68
chr12	9578036	rs147150188	A	G	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.79;MQRankSum=-2.187;QD=3.93;ReadPosRankSum=0.705;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:136,43:0.24:179
chr12	9578197	rs76671194	A	T	6920.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:227,324:0.59:551
chr12	9580203	rs58705479	G	C	12243.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr12	9580395	rs61914681	C	G	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.90;QD=42.14;SOR=5.640;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	9581798	rs11050925	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr12	9582052	.	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=52.05;MQRankSum=-0.446;QD=1.31;ReadPosRankSum=1.719;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:87,20:0.19:107
chr12	9582244	rs201653123	G	A	820.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.10;MQRankSum=1.012;QD=27.36;ReadPosRankSum=2.314;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr12	9583216	rs3864916	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.15;QD=43.55;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	9583221	rs3864915	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.88;QD=44.45;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	9583324	rs4012577	G	A	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.86;QD=27.39;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	9584916	rs3882934	C	T	159.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.71;MQRankSum=1.593;QD=17.70;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr12	9584991	rs2553132	C	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	9585573	rs71447582	C	T	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=49.05;MQRankSum=-0.400;QD=6.27;ReadPosRankSum=0.503;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr12	9585598	rs200479049	T	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.92;QD=26.91;SOR=4.351;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	9585631	rs75182719	C	T	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.771;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.41;MQRankSum=0.608;QD=6.70;ReadPosRankSum=-0.593;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr12	9585658	rs200040906	A	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.055;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.26;MQRankSum=0.397;QD=7.69;ReadPosRankSum=0.397;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	9585727	.	GC	G	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.70;MQRankSum=-0.524;QD=9.15;ReadPosRankSum=0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	9586005	rs201987563	G	A	87.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=17.56;ReadPosRankSum=-0.000;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	9586591	rs61914695	G	C	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:187,82:0.30:269
chr12	9589580	rs12425701	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	9589681	rs77571608	C	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.89;QD=24.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	9589717	.	G	T	315.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.26;QD=28.71;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	9589766	.	G	A	103.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.78;QD=25.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9589821	.	A	G	40.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	9590197	rs61914700	T	C	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.03;QD=27.74;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	9590500	rs200363665	G	GC	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=46.87;MQRankSum=-3.539;QD=3.97;ReadPosRankSum=1.337;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr12	9590505	rs201948852	G	A	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=47.11;MQRankSum=-3.968;QD=18.34;ReadPosRankSum=1.100;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,35:0.66:53
chr12	9707317	rs200514101	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	9707329	rs201854834	G	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	9713438	rs76076453	T	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	9751035	rs3072716	C	CAT	3437.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	9752576	rs55659351	TAA	T	311.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.34;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	9754221	rs3072720	A	AAAAC	6664.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.065;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.347;QD=42.45;ReadPosRankSum=0.262;SOR=1.417;set=HC	GT:AD:AF:DP	1/1:4,153:0.97:157
chr12	9822412	.	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.739;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:133,29:0.18:162
chr12	9832822	rs2114872	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-0.015;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr12	9832882	rs2114873	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	9833426	rs10844424	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	9833524	rs3764022	C	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr12	9833628	rs3764021	C	T	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-1.291;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:24,50:0.68:74
chr12	9846521	rs7968401	C	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.42;ReadPosRankSum=-0.673;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	9869271	rs2268146	A	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-0.113;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr12	9885526	rs12304510	C	T	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:61,96:0.61:157
chr12	9885707	rs71045297	A	ATAAGT	6200.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:112,155:0.58:267
chr12	9885813	rs61913428	A	T	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:120,64:0.35:184
chr12	9885840	rs34201389	A	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:93,46:0.33:139
chr12	9906067	rs1051065	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr12	9906350	rs57931161	GA	G	315.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	9980243	rs2232543	A	G	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	9994445	rs33911869	GTGT	G	2977.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	10015082	rs253147	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr12	10015177	rs253146	A	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.790;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr12	10041364	rs1797517	G	A	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	10045537	rs16908349	C	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr12	10045919	rs577575	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr12	10046052	rs576601	C	A	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr12	10051433	rs1407899	A	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr12	10066077	rs117483654	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	10069302	rs526680	C	T	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:287,129:0.31:416
chr12	10074626	rs688577	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr12	10124336	rs2984956	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	10124373	rs2961542	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr12	10131684	rs607567	T	G	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:162,77:0.32:239
chr12	10131939	rs536947	C	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-2.561;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:64,24:0.27:88
chr12	10136672	rs61169344	GA	G,AA	801.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/2:0.52,0.48:33
chr12	10137557	rs479499	A	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-1.920;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:38,32:0.46:70
chr12	10137645	rs588272	T	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	10145952	rs17734335	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.239;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr12	10146005	rs11412323	C	CA	187.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=0.000;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr12	10146236	rs617956	C	T	5788.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	10146470	rs542700	G	A	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	10147850	rs521040	T	C	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:160,85:0.35:245
chr12	10148031	rs522837	T	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr12	10149406	rs581949	T	C	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	10149657	rs582968	T	C	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	10149851	rs583903	C	T	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	10151642	rs612593	T	C	7552.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	10151762	rs11379994	T	TC	6968.73	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:113,207:0.65:320
chr12	10163375	rs1359082	C	A	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=1.351;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:55,102:0.65:157
chr12	10165469	rs476474	A	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	10165593	rs620449	T	G	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	10167277	rs637790	G	C	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	10171111	rs77423772	G	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:32,71:0.69:103
chr12	10171128	rs78910408	T	C	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:32,65:0.67:97
chr12	10205420	.	G	GT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.627;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:84,24:0.22:108
chr12	10206925	rs7315231	A	G	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:156,77:0.33:233
chr12	10215582	rs10772230	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr12	10217326	rs10622534	C	CTT	5506.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	10241541	rs11376074	A	AT	218.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr12	10241553	rs5008763	C	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.04;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	10241593	rs1352477	A	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	10241829	rs2277416	G	T	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	10245158	rs11347002	GA	G	354.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	10251256	rs10706436	GA	G	392.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr12	10251287	rs6488257	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	10251385	rs3816845	T	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	10251445	rs2306894	C	G	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	10270938	rs11053597	G	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr12	10271055	rs7959451	T	C	6986.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr12	10271087	rs16910526	A	C	2261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=1.481;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:206,122:0.37:328
chr12	10275684	rs11053608	T	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.098;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr12	10275769	rs7137840	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr12	10276001	rs139108713	G	GAGAGAA	987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.94;MQRankSum=3.036;QD=13.53;ReadPosRankSum=-1.725;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:41,32:0.44:73
chr12	10276013	.	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.436;QD=0.98;ReadPosRankSum=1.873;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr12	10277733	rs11053615	C	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=7.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.11;ReadPosRankSum=-2.208;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	10277740	rs111544843	A	G	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=-1.371;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr12	10277779	rs10717980	CA	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.022;QD=4.80;ReadPosRankSum=0.626;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr12	10279513	rs35532667	T	TA	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.793;QD=7.06;ReadPosRankSum=-0.483;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr12	10312648	rs13306593	C	A	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=-0.588;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:27,61:0.69:88
chr12	10312691	rs17174597	T	C	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr12	10312878	rs2634156	C	T	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	10312914	rs3816844	G	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chr12	10313075	rs3736235	T	C	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr12	10313134	rs3736234	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr12	10313358	rs3736232	C	G	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:40,104:0.72:144
chr12	10332291	rs2130007	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr12	10332358	rs2130008	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr12	10339242	.	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DP=159;set=Intersection	GT:AD:AF:DP	0/1:99,60:0.38:159
chr12	10370763	rs73058099	A	G	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr12	10373324	rs7301041	T	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	10460543	rs2302489	A	T	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	10461883	rs10734825	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	10462052	rs10772256	T	G	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr12	10462431	rs7980604	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	10467533	rs2537752	T	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	10511662	rs10743886	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.596;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr12	10525644	rs1351113	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:126,53:0.30:179
chr12	10525740	rs1049172	C	T	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.455;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:241,92:0.28:333
chr12	10531896	.	C	T	26	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=2;MGOF=22;MMLQ=25;MQ=60.77;NF=1;NR=2;PP=26;QD=20.2570708491;SC=CAAGTATTCCCTCATTGTTAA;SbPval=0.32;Source=Platypus;TC=8;TCF=5;TCR=3;TR=3;WE=10531904;WS=10531886;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	10532111	rs2255353	T	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr12	10532326	rs2255336	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.351;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:56,25:0.31:81
chr12	10532434	rs2617151	A	G	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=1.130;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr12	10541251	rs2294147	T	C	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr12	10560228	rs17514000	G	A	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:44,120:0.73:164
chr12	10560824	rs2617169	T	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr12	10560957	rs2617170	T	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr12	10561913	rs3214902	TA	T	532.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr12	10562025	rs1841957	C	T	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.954;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-2.231;QD=4.88;ReadPosRankSum=-0.676;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:182,73:0.29:255
chr12	10562089	rs1841958	A	C	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:188,87:0.32:275
chr12	10565113	rs17548983	T	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-0.138;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:58,29:0.33:87
chr12	10570965	rs2682495	C	G	7545.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr12	10571042	rs2741882	A	G	5159.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	10571091	rs2682494	T	G	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	10571106	rs2682493	G	C	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	10571158	rs10743890	C	T	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	10571177	rs4394921	A	G	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	10571504	rs4579992	C	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.80;QD=42.41;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	10571514	rs4275705	C	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.70;QD=43.94;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	10571536	rs33947579	A	AT	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.70;QD=28.39;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	10571622	rs4093355	G	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.85;QD=30.67;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	10571650	rs28521176	G	C	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	10572544	rs143188402	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	10572687	rs2682492	G	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	10572839	rs2253365	A	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	10572982	rs2741881	A	G	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	10573094	rs2682491	C	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=0.747;QD=3.70;ReadPosRankSum=-0.380;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:79,26:0.25:105
chr12	10573095	rs2682490	A	G	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	10573145	rs2682489	C	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.04;QD=30.20;SOR=4.664;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	10573211	rs10734829	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.72;QD=29.98;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	10579308	rs117236878	T	C	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr12	10583611	rs3003	C	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	10586921	.	C	T	118.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:34,2:0.06:36
chr12	10586946	rs113946028	C	T	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=19.056;MLEAC=1;MLEAF=0.500;MQ=49.57;MQRankSum=-3.604;QD=17.31;ReadPosRankSum=-4.015;SOR=2.538;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr12	10586956	rs72475445	C	G	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=11.876;MLEAC=1;MLEAF=0.500;MQ=51.65;MQRankSum=-1.680;QD=16.74;ReadPosRankSum=-3.957;SOR=1.738;set=HC	GT:AD:AF:DP	0/1:46,55:0.54:101
chr12	10586961	rs1356930	T	C	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=13.116;MLEAC=1;MLEAF=0.500;MQ=52.01;MQRankSum=1.370;QD=9.31;ReadPosRankSum=3.615;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:63,48:0.43:111
chr12	10586978	rs144149096	A	AT	1959.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,79:0.60:132
chr12	10586989	rs5796394	AT	A	1135.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:102,56:0.35:158
chr12	10587111	rs61917677	A	G	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	10587158	rs35801775	A	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:20,51:0.72:71
chr12	10588530	rs75545535	C	G	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.500;MQ=55.67;MQRankSum=-0.178;QD=2.17;ReadPosRankSum=-0.547;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:124,31:0.20:155
chr12	10588647	rs28730284	A	G	939.56	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:4,37:0.90:41
chr12	10594848	rs78547237	C	A	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.61;QD=24.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	10599270	rs7314384	G	A	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:48,79:0.62:127
chr12	10599347	rs2682471	T	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.30;QD=30.73;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	10599425	rs144548572	C	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	10600282	rs11053804	C	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr12	10602077	rs2734440	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr12	10602624	rs3216778	TTTTAAG	T	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr12	10603670	rs2253849	T	C	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	10658942	rs7135490	C	T	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr12	10659438	rs10772299	T	C	7058.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr12	10659964	rs10772300	C	G	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	10675250	rs7980396	G	C	3824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=0.060;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:103,176:0.63:279
chr12	10675466	rs73070558	A	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr12	10746385	rs2244387	G	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	10748216	rs73062497	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	10748314	rs2168749	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	10748403	rs2682484	A	T	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	10759032	rs10772333	T	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	10760328	rs3947920	G	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.51;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	10760335	rs2125090	T	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.19;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	10760380	rs2125089	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	10762069	rs7311796	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	10763236	rs10845182	G	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.89;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	10763419	rs72054859	CTAGACATG	C	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	10763440	rs12811247	G	T	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	10766244	rs10772335	A	C	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	10772983	rs1870194	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	10774698	rs2900467	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	10775195	rs1078437	T	C	8465.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:190,372:0.66:562
chr12	10782115	rs3759259	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr12	10783729	rs2290717	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr12	10786757	rs5796407	T	TGAA	5317.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	10786797	rs2252664	C	T	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr12	10854625	rs10845205	G	A	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:34,75:0.69:109
chr12	10854763	rs73044645	G	A	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:66,98:0.60:164
chr12	10854878	rs3782670	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	10856219	rs2418102	C	T	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.894;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:70,87:0.55:157
chr12	10868142	.	T	TA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.937;QD=0.76;ReadPosRankSum=-1.001;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr12	10870900	rs11309033	AC	A	90.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr12	10871667	rs33016	A	G	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	10875488	rs1126501	T	C	4714.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:126,217:0.63:343
chr12	10958658	rs2537817	T	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	10959031	rs1548803	C	T	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	10962115	rs3741845	A	G	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	10978402	rs597468	G	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	10999708	rs1047699	T	C	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	10999780	rs1063193	C	T	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	11035274	rs28607516	G	T	951.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.915;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.84;MQRankSum=-1.674;QD=27.19;ReadPosRankSum=0.365;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr12	11035368	rs11054060	T	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	11035482	rs10845228	T	C	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	11035533	rs10845229	G	A	7947.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr12	11061122	rs1015443	T	C	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	11083356	rs116998526	A	G	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-3.891;QD=3.03;ReadPosRankSum=-0.880;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:246,71:0.22:317
chr12	11083677	rs10772391	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	11091432	rs3741843	C	T	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	11138683	rs10772397	C	T	8891.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr12	11138852	rs1376251	C	T	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:132,60:0.31:192
chr12	11149532	rs1450839	A	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:153,68:0.31:221
chr12	11149711	rs10845279	C	A	2659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=7.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.254;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:161,82:0.34:243
chr12	11149720	rs10845280	A	G	2596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.100;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=7.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=1.600;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:150,73:0.33:223
chr12	11149769	rs10845281	T	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:93,62:0.40:155
chr12	11150033	rs12226919	G	T	2240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-1.296;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:342,138:0.29:480
chr12	11150046	rs12226920	G	T	4470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.987;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:365,137:0.27:502
chr12	11150054	rs79420812	C	T	4477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-1.308;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:367,138:0.27:505
chr12	11150319	rs11054143	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr12	11150540	rs34965724	CA	C	685.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr12	11150551	rs4388985	G	A	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	11150579	rs1463237	C	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	11174219	rs79407997	C	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-2.965;QD=0.64;ReadPosRankSum=-5.483;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:169,19:0.10:188
chr12	11174223	rs74363809	G	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.536;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.903;QD=0.42;ReadPosRankSum=-4.606;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:182,20:0.10:202
chr12	11174261	rs75441696	C	G	2598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.461;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.802;QD=7.26;ReadPosRankSum=-2.961;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:280,78:0.22:358
chr12	11174264	rs77074409	C	A	2685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.156;QD=7.32;ReadPosRankSum=-2.939;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:284,83:0.23:367
chr12	11174271	rs79475879	T	C	3201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-4.404;QD=7.87;ReadPosRankSum=-2.237;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:310,97:0.24:407
chr12	11174276	rs10772420	G	A	9781.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:99,334:0.77:433
chr12	11174277	.	T	C	3446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;ClippingRankSum=0.000;DP=442;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.392;QD=7.85;ReadPosRankSum=-0.820;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:334,105:0.24:439
chr12	11174282	rs74386164	T	C	3729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=6.103;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-4.993;QD=8.18;ReadPosRankSum=-0.267;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:344,112:0.25:456
chr12	11174286	rs77837442	C	A	3855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.855;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=3.870;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-4.866;QD=8.00;ReadPosRankSum=-0.266;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:359,123:0.26:482
chr12	11174302	rs72475480	A	G	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.739;QD=4.24;ReadPosRankSum=-2.077;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:405,146:0.26:551
chr12	11174327	rs72475481	C	T	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:419,185:0.31:604
chr12	11174372	rs74772077	C	G	6733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-7.370;QD=12.56;ReadPosRankSum=1.997;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:343,193:0.36:536
chr12	11174376	rs372566412	T	C	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=2.735;QD=2.47;ReadPosRankSum=-0.028;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:414,101:0.20:515
chr12	11174380	rs76970958	C	T	6648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-7.315;QD=13.62;ReadPosRankSum=2.055;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:310,178:0.36:488
chr12	11174390	rs74992161	G	A	6017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-7.752;QD=13.55;ReadPosRankSum=2.581;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:286,158:0.36:444
chr12	11174397	rs76455106	T	A	5539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=2.608;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-7.807;QD=13.54;ReadPosRankSum=1.689;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:261,148:0.36:409
chr12	11174416	rs112900131	A	G	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:206,124:0.38:330
chr12	11174466	rs199592952	G	A	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.669;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=51.529;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-11.757;QD=5.69;ReadPosRankSum=0.418;SOR=4.012;set=HC	GT:AD:AF:DP	0/1:163,41:0.20:204
chr12	11174467	.	A	C	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.303;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=33.632;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-8.568;QD=1.21;ReadPosRankSum=-0.549;SOR=3.630;set=HC	GT:AD:AF:DP	0/1:173,27:0.14:200
chr12	11174476	rs200081075	G	A	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=50.501;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-12.946;QD=4.49;ReadPosRankSum=-0.319;SOR=4.395;set=HC	GT:AD:AF:DP	0/1:163,34:0.17:197
chr12	11174478	.	C	A	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=51.017;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-13.285;QD=4.47;ReadPosRankSum=-0.398;SOR=4.391;set=HC	GT:AD:AF:DP	0/1:167,33:0.17:200
chr12	11174753	rs1868769	G	A	7135.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	11175087	rs12313469	G	A	3296.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:73,135:0.65:208
chr12	11182989	rs11522329	T	C	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-19.746;QD=2.19;ReadPosRankSum=1.963;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:579,147:0.20:726
chr12	11182998	rs200315131	CA	TC	8737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.994;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=3.503;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-22.241;QD=11.68;ReadPosRankSum=5.031;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:502,246:0.33:748
chr12	11183035	rs78820764	C	T	4039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=5.566;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-20.430;QD=5.06;ReadPosRankSum=3.472;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:649,150:0.19:799
chr12	11183042	rs3759246	C	G	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.635;ClippingRankSum=0.000;DB;DP=785;ExcessHet=3.0103;FS=2.903;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-7.951;QD=2.29;ReadPosRankSum=0.118;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:686,95:0.12:781
chr12	11183046	rs201730548	C	T	8029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.307;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=5.566;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-22.932;QD=10.39;ReadPosRankSum=2.057;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:543,230:0.30:773
chr12	11183052	rs199894662	G	A	7835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.839;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=6.759;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-21.727;QD=10.39;ReadPosRankSum=0.192;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:529,225:0.30:754
chr12	11183066	rs138895028	A	T	6313.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:529,188:0.26:717
chr12	11183107	.	T	C	1450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DP=628;ExcessHet=3.0103;FS=36.912;MLEAC=1;MLEAF=0.500;MQ=54.89;MQRankSum=-11.149;QD=2.31;ReadPosRankSum=-1.763;SOR=3.780;set=HC	GT:AD:AF:DP	0/1:546,81:0.13:627
chr12	11183108	rs12318612	G	C	6686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.924;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=4.979;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=0.070;QD=10.66;ReadPosRankSum=-0.323;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:314,313:0.50:627
chr12	11183114	.	AT	GC	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.085;ClippingRankSum=0.000;DP=626;ExcessHet=3.0103;FS=44.354;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-11.120;QD=1.97;ReadPosRankSum=-1.544;SOR=4.736;set=HC	GT:AD:AF:DP	0/1:557,68:0.11:625
chr12	11183121	.	G	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.542;ClippingRankSum=0.000;DP=623;ExcessHet=3.0103;FS=44.732;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-11.239;QD=1.16;ReadPosRankSum=-1.352;SOR=5.247;set=HC	GT:AD:AF:DP	0/1:565,57:0.09:622
chr12	11183123	rs201103714	T	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.841;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=44.721;MLEAC=1;MLEAF=0.500;MQ=54.79;MQRankSum=-11.163;QD=0.96;ReadPosRankSum=-1.794;SOR=5.197;set=HC	GT:AD:AF:DP	0/1:566,56:0.09:622
chr12	11183133	.	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.142;ClippingRankSum=0.000;DP=607;ExcessHet=3.0103;FS=38.630;MLEAC=1;MLEAF=0.500;MQ=54.71;MQRankSum=-11.422;QD=0.28;ReadPosRankSum=-2.135;SOR=7.512;set=HC	GT:AD:AF:DP	0/1:562,43:0.07:605
chr12	11183217	rs10772423	C	T	5870.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:171,251:0.59:422
chr12	11183255	rs10845293	G	A	5554.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:120,232:0.66:352
chr12	11183286	rs10845294	G	C	5770.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:108,229:0.68:337
chr12	11183451	rs10743938	A	T,C	10385.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=432;set=Intersection	GT:AF:DP	1/2:0.70,0.30:430
chr12	11183475	rs372544509	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.503;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=82.180;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-19.628;QD=0.24;ReadPosRankSum=-3.239;SOR=6.665;set=HC	GT:AD:AF:DP	0/1:373,27:0.07:400
chr12	11183484	.	CT	GA	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.197;ClippingRankSum=0.000;DP=400;ExcessHet=3.0103;FS=102.124;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-19.672;QD=0.69;ReadPosRankSum=-2.494;SOR=7.111;set=HC	GT:AD:AF:DP	0/1:365,34:0.09:399
chr12	11183496	rs199736450	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.921;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=90.190;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-19.326;QD=1.54;ReadPosRankSum=-0.828;SOR=5.134;set=HC	GT:AD:AF:DP	0/1:344,40:0.10:384
chr12	11183506	rs115707514	T	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.127;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=88.179;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-19.012;QD=2.45;ReadPosRankSum=-0.343;SOR=4.404;set=HC	GT:AD:AF:DP	0/1:323,48:0.13:371
chr12	11183524	rs75159539	T	C	1530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.354;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=35.374;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-16.811;QD=4.11;ReadPosRankSum=-0.026;SOR=2.033;set=HC	GT:AD:AF:DP	0/1:302,70:0.19:372
chr12	11183541	rs78152338	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=6.647;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-10.992;QD=0.96;ReadPosRankSum=0.382;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:345,57:0.14:402
chr12	11183576	rs72475488	T	C	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:267,149:0.36:416
chr12	11183642	rs73049067	A	G	4737.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:321,224:0.41:545
chr12	11183676	rs73049072	C	T	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:321,203:0.39:524
chr12	11183697	rs73049074	C	A	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:280,159:0.36:439
chr12	11183708	rs80125932	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.476;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=4.427;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-4.428;QD=0.22;ReadPosRankSum=-0.516;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:360,44:0.11:404
chr12	11183722	rs78562467	A	C	3445.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:245,131:0.35:376
chr12	11183752	rs72475489	T	C	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.471;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=8.166;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-10.457;QD=4.80;ReadPosRankSum=-1.105;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:196,67:0.25:263
chr12	11183793	.	G	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=20.381;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-12.968;QD=2.53;ReadPosRankSum=-0.107;SOR=2.749;set=HC	GT:AD:AF:DP	0/1:148,22:0.13:170
chr12	11183797	.	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=24.872;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-12.855;QD=2.60;ReadPosRankSum=-0.408;SOR=3.341;set=HC	GT:AD:AF:DP	0/1:146,21:0.13:167
chr12	11183809	.	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=35.916;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-12.836;QD=1.16;ReadPosRankSum=-0.159;SOR=5.143;set=HC	GT:AD:AF:DP	0/1:150,16:0.10:166
chr12	11183832	rs10845295	G	A	3705.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:43,146:0.77:189
chr12	11199734	rs2597984	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	11201689	rs2597986	C	T	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	11201846	rs199838132	A	C	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.420;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=6.037;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-9.739;QD=5.71;ReadPosRankSum=0.288;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:127,34:0.21:161
chr12	11201850	.	TATC	T	912.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=6.212;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-9.527;QD=5.74;ReadPosRankSum=0.748;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:127,32:0.20:159
chr12	11201865	.	AAT	A	891.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.690;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=4.119;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-8.651;QD=7.25;ReadPosRankSum=-0.329;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:95,28:0.23:123
chr12	11201868	.	G	C	651.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-8.238;QD=5.67;ReadPosRankSum=1.189;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:92,23:0.20:115
chr12	11201872	.	AG	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-7.750;QD=0.83;ReadPosRankSum=0.822;SOR=1.597;set=HC	GT:AD:AF:DP	0/1:93,15:0.14:108
chr12	11201889	rs72475501	C	G	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-6.900;QD=7.04;ReadPosRankSum=-1.273;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr12	11201928	rs74318546	C	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.309;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-5.797;QD=3.56;ReadPosRankSum=-2.218;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr12	11201933	rs79649094	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-6.737;QD=2.53;ReadPosRankSum=-0.750;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:41,6:0.13:47
chr12	11201934	rs75574044	G	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-6.435;QD=2.83;ReadPosRankSum=-0.418;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:38,5:0.12:43
chr12	11201962	rs2597987	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	11214005	.	CA	TT	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DP=529;ExcessHet=3.0103;FS=4.522;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-21.376;QD=0.10;ReadPosRankSum=-5.654;SOR=1.566;set=HC	GT:AD:AF:DP	0/1:496,32:0.06:528
chr12	11214025	rs372278369	A	T	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.997;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-23.715;QD=1.63;ReadPosRankSum=-7.490;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:545,87:0.14:632
chr12	11214066	.	T	C	6464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.108;ClippingRankSum=0.000;DP=818;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-27.444;QD=7.94;ReadPosRankSum=0.860;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:620,194:0.24:814
chr12	11214074	rs200528237	T	C	7018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620;ClippingRankSum=0.000;DB;DP=844;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-27.907;QD=8.35;ReadPosRankSum=2.532;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:628,213:0.25:841
chr12	11214080	.	G	A	7327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.044;ClippingRankSum=0.000;DP=855;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-28.092;QD=8.60;ReadPosRankSum=4.047;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:632,220:0.26:852
chr12	11214082	.	T	C	7433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.590;ClippingRankSum=0.000;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-28.108;QD=8.71;ReadPosRankSum=4.602;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:632,221:0.26:853
chr12	11214091	.	G	C	7581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.960;ClippingRankSum=0.000;DP=853;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-28.190;QD=8.92;ReadPosRankSum=5.516;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:623,227:0.27:850
chr12	11214101	.	C	G	7612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.592;ClippingRankSum=0.000;DP=842;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-27.988;QD=9.07;ReadPosRankSum=5.499;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:611,228:0.27:839
chr12	11214133	rs76020872	C	T	6717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.773;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-25.873;QD=9.30;ReadPosRankSum=0.015;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:521,201:0.28:722
chr12	11214137	rs76147157	C	T	6683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.492;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-25.356;QD=9.62;ReadPosRankSum=-1.421;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:499,196:0.28:695
chr12	11214153	.	C	T	5120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.478;ClippingRankSum=0.000;DP=605;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-23.773;QD=8.52;ReadPosRankSum=-2.035;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:457,144:0.24:601
chr12	11214156	.	G	T	4588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.622;ClippingRankSum=0.000;DP=585;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-23.579;QD=7.90;ReadPosRankSum=-2.698;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:443,138:0.24:581
chr12	11214161	.	TG	CA	3931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DP=554;ExcessHet=3.0103;FS=1.364;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.51;MQRankSum=-23.188;QD=7.15;ReadPosRankSum=-2.825;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:427,123:0.22:550
chr12	11214167	.	G	C	3662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0.000;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-22.592;QD=7.02;ReadPosRankSum=-4.359;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:406,116:0.22:522
chr12	11214199	rs200812670	G	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=21.050;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-18.753;QD=1.73;ReadPosRankSum=-2.236;SOR=2.120;set=HC	GT:AD:AF:DP	0/1:317,37:0.10:354
chr12	11214212	rs2708380	A	T	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:132,192:0.59:324
chr12	11214214	rs200461484	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=9.137;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-17.805;QD=1.30;ReadPosRankSum=-4.089;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:288,31:0.10:319
chr12	11214273	rs377505981	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.738;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=8.853;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-17.106;QD=0.37;ReadPosRankSum=-0.780;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:297,31:0.09:328
chr12	11214299	rs376020270	T	C	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.893;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=13.928;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-19.153;QD=2.92;ReadPosRankSum=-2.242;SOR=1.717;set=HC	GT:AD:AF:DP	0/1:346,58:0.14:404
chr12	11214324	.	C	T	3380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DP=485;ExcessHet=3.0103;FS=9.102;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-18.456;QD=6.97;ReadPosRankSum=-2.058;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:378,107:0.22:485
chr12	11214326	.	G	C	3419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DP=490;ExcessHet=3.0103;FS=7.848;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-18.531;QD=6.98;ReadPosRankSum=-1.111;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:384,106:0.22:490
chr12	11214330	.	G	A	3506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DP=492;ExcessHet=3.0103;FS=7.516;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-18.669;QD=7.13;ReadPosRankSum=-0.610;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:382,110:0.22:492
chr12	11214336	rs371367179	A	T	3783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=6.211;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-19.129;QD=7.60;ReadPosRankSum=0.344;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:383,115:0.23:498
chr12	11214351	.	G	C	4835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DP=515;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-19.977;QD=9.41;ReadPosRankSum=0.372;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:375,139:0.27:514
chr12	11214360	rs73260771	C	A,T	8414.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=523;set=Intersection	GT:AF:DP	1/2:0.29,0.46:522
chr12	11214363	.	T	C	5447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.316;ClippingRankSum=0.000;DP=526;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-20.207;QD=10.38;ReadPosRankSum=0.993;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:372,153:0.29:525
chr12	11214368	.	T	C	5758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;ClippingRankSum=0.000;DP=535;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-20.041;QD=10.80;ReadPosRankSum=1.225;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:372,161:0.30:533
chr12	11214386	rs200171449	T	G	6313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.391;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-20.102;QD=11.42;ReadPosRankSum=2.680;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:377,176:0.32:553
chr12	11214392	rs200937291	G	A	6115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.818;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-20.273;QD=10.90;ReadPosRankSum=3.624;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:385,176:0.31:561
chr12	11214437	rs72477410	T	C	4683.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:354,159:0.31:513
chr12	11214455	rs72477411	T	C	4090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=11.596;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-19.088;QD=8.04;ReadPosRankSum=-0.215;SOR=1.502;set=HC	GT:AD:AF:DP	0/1:379,130:0.26:509
chr12	11214472	rs200936852	A	G	2412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=12.591;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-19.181;QD=5.05;ReadPosRankSum=-3.663;SOR=1.608;set=HC	GT:AD:AF:DP	0/1:376,102:0.21:478
chr12	11214495	.	T	C	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.090;ClippingRankSum=0.000;DP=413;ExcessHet=3.0103;FS=27.697;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-18.401;QD=2.57;ReadPosRankSum=-3.013;SOR=3.245;set=HC	GT:AD:AF:DP	0/1:362,46:0.11:408
chr12	11214498	.	T	C	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.107;ClippingRankSum=0.000;DP=403;ExcessHet=3.0103;FS=51.887;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-18.021;QD=1.96;ReadPosRankSum=-2.743;SOR=3.690;set=HC	GT:AD:AF:DP	0/1:357,41:0.10:398
chr12	11214509	.	CA	TG	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.738;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=47.848;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-17.592;QD=1.33;ReadPosRankSum=-4.149;SOR=3.830;set=HC	GT:AD:AF:DP	0/1:339,35:0.09:374
chr12	11244001	rs201196515	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.829;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=23.975;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-8.525;QD=0.40;ReadPosRankSum=-2.523;SOR=3.006;set=HC	GT:AD:AF:DP	0/1:227,20:0.08:247
chr12	11244008	rs200479139	AT	GC	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.563;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=22.433;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=-8.740;QD=0.48;ReadPosRankSum=-2.666;SOR=2.631;set=HC	GT:AD:AF:DP	0/1:234,21:0.08:255
chr12	11244015	rs200533679	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.192;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=22.591;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-8.703;QD=0.43;ReadPosRankSum=-2.754;SOR=2.629;set=HC	GT:AD:AF:DP	0/1:242,21:0.08:263
chr12	11244017	rs201618803	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.327;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=22.728;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-8.703;QD=0.39;ReadPosRankSum=-2.765;SOR=2.627;set=HC	GT:AD:AF:DP	0/1:242,21:0.08:263
chr12	11244027	rs202101405	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.370;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=25.848;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-9.147;QD=0.88;ReadPosRankSum=-3.427;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:241,24:0.09:265
chr12	11244036	rs200291442	T	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.621;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=24.808;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-8.846;QD=1.08;ReadPosRankSum=-3.098;SOR=2.274;set=HC	GT:AD:AF:DP	0/1:242,26:0.10:268
chr12	11244067	.	A	ATT	1210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=4.940;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-9.132;QD=4.73;ReadPosRankSum=-1.072;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:213,43:0.17:256
chr12	11244070	.	TCC	T	1282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=4.858;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-9.092;QD=4.95;ReadPosRankSum=-0.305;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:214,45:0.17:259
chr12	11244091	rs199768488	C	T	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=4.499;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-9.698;QD=7.81;ReadPosRankSum=1.095;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:174,56:0.24:230
chr12	11244096	.	TG	CA	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=4.472;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-9.906;QD=8.04;ReadPosRankSum=2.413;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:172,57:0.25:229
chr12	11244102	rs199943442	G	C	1902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.560;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-11.170;QD=8.98;ReadPosRankSum=2.893;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:154,58:0.27:212
chr12	11244126	rs113410031	G	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:133,47:0.26:180
chr12	11244149	rs73064964	G	A	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:97,51:0.34:148
chr12	11244166	rs35720106	G	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:49,86:0.64:135
chr12	11244169	rs201144595	G	A	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:81,49:0.38:130
chr12	11244190	rs202034865	A	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:88,34:0.28:122
chr12	11244194	rs71443637	T	C	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:31,90:0.74:121
chr12	11244225	rs200919222	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=16.916;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-9.785;QD=1.93;ReadPosRankSum=-3.709;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:92,14:0.13:106
chr12	11244234	rs78179946	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=13.823;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-10.368;QD=0.77;ReadPosRankSum=-3.158;SOR=2.028;set=HC	GT:AD:AF:DP	0/1:100,9:0.08:109
chr12	11244369	.	GC	AT	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=0.818;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-11.408;QD=2.54;ReadPosRankSum=-2.122;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:169,24:0.12:193
chr12	11244378	rs201455884	C	G	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-11.549;QD=3.16;ReadPosRankSum=-1.666;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:166,29:0.15:195
chr12	11244390	rs73064966	T	C	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.729;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-10.694;QD=3.52;ReadPosRankSum=-1.449;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:161,38:0.19:199
chr12	11244432	rs111982292	A	G	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-10.175;QD=5.11;ReadPosRankSum=0.413;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:138,40:0.22:178
chr12	11244435	rs111525185	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=5.627;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-5.764;QD=0.35;ReadPosRankSum=0.594;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:148,25:0.14:173
chr12	11244470	rs201460452	T	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-9.462;QD=1.52;ReadPosRankSum=-0.827;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:120,19:0.14:139
chr12	11244483	rs201210705	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-8.516;QD=1.51;ReadPosRankSum=-2.954;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:108,16:0.13:124
chr12	11244591	rs73064968	C	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=6.554;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-8.242;QD=2.44;ReadPosRankSum=0.926;SOR=1.572;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr12	11244603	rs200999522	T	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:57,18:0.24:75
chr12	11244634	rs200893955	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr12	11244646	rs201583586	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr12	11244687	rs113197337	G	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr12	11244721	rs201281372	G	C	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-9.207;QD=8.55;ReadPosRankSum=1.797;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr12	11244723	rs191086711	A	C	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.979;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-9.207;QD=8.42;ReadPosRankSum=1.775;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr12	11244725	rs68157013	C	G	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:24,67:0.74:91
chr12	11244730	rs199862459	AA	GG	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.423;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.915;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-9.475;QD=7.48;ReadPosRankSum=2.022;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr12	11244744	rs201819808	GT	AC	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.931;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.953;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-9.680;QD=5.71;ReadPosRankSum=1.604;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:80,20:0.20:100
chr12	11244793	rs368569282	C	T	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.496;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-9.758;QD=6.41;ReadPosRankSum=-2.241;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr12	11244797	rs199777806	C	A	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=5.717;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-9.892;QD=6.25;ReadPosRankSum=-1.806;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:97,26:0.21:123
chr12	11244805	.	A	T	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=7.206;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-9.848;QD=6.35;ReadPosRankSum=-1.717;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:96,26:0.21:122
chr12	11244814	rs377076131	T	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=5.859;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-9.437;QD=6.06;ReadPosRankSum=-0.580;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:96,25:0.21:121
chr12	11244846	.	A	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-7.895;QD=5.33;ReadPosRankSum=4.135;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr12	11244849	.	T	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-7.944;QD=5.27;ReadPosRankSum=3.932;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr12	11244855	.	T	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=5.520;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-7.796;QD=5.56;ReadPosRankSum=3.527;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr12	11244871	.	G	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=5.764;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-6.891;QD=6.82;ReadPosRankSum=2.105;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr12	11244878	rs369719862	A	G	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=12.005;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-6.226;QD=8.58;ReadPosRankSum=0.727;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr12	11285754	rs2600357	G	A	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr12	11285802	rs2600356	G	T	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:53,104:0.66:157
chr12	11286088	rs2599404	A	C	8661.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:203,368:0.64:571
chr12	11286249	rs77777159	T	C	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.317;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=6.706;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-17.695;QD=2.81;ReadPosRankSum=2.023;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:456,72:0.14:528
chr12	11286274	.	C	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.733;ClippingRankSum=0.000;DP=572;ExcessHet=3.0103;FS=9.688;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-19.485;QD=1.93;ReadPosRankSum=3.756;SOR=1.487;set=HC	GT:AD:AF:DP	0/1:506,62:0.11:568
chr12	11286276	.	G	C	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.201;ClippingRankSum=0.000;DP=577;ExcessHet=3.0103;FS=9.577;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-19.574;QD=1.76;ReadPosRankSum=3.580;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:511,62:0.11:573
chr12	11286280	.	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.579;ClippingRankSum=0.000;DP=584;ExcessHet=3.0103;FS=9.727;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-20.755;QD=1.66;ReadPosRankSum=3.141;SOR=1.485;set=HC	GT:AD:AF:DP	0/1:518,62:0.11:580
chr12	11286282	.	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.067;ClippingRankSum=0.000;DP=579;ExcessHet=3.0103;FS=9.577;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-21.469;QD=1.68;ReadPosRankSum=2.763;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:513,62:0.11:575
chr12	11286289	.	A	T	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.473;ClippingRankSum=0.000;DP=586;ExcessHet=3.0103;FS=7.877;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-21.567;QD=1.61;ReadPosRankSum=1.914;SOR=1.461;set=HC	GT:AD:AF:DP	0/1:521,61:0.10:582
chr12	11286309	.	G	C	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DP=584;ExcessHet=3.0103;FS=10.980;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-21.651;QD=1.23;ReadPosRankSum=-1.641;SOR=1.669;set=HC	GT:AD:AF:DP	0/1:530,51:0.09:581
chr12	11286314	.	A	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DP=596;ExcessHet=3.0103;FS=9.878;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-22.452;QD=0.61;ReadPosRankSum=-1.136;SOR=1.800;set=HC	GT:AD:AF:DP	0/1:548,44:0.07:592
chr12	11286713	rs113799622	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.943;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=61.913;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-15.779;QD=0.77;ReadPosRankSum=1.072;SOR=3.676;set=HC	GT:AD:AF:DP	0/1:224,27:0.11:251
chr12	11286736	rs112605675	G	C	2218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.327;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=13.311;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-15.024;QD=7.95;ReadPosRankSum=-2.844;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:214,65:0.23:279
chr12	11286745	.	AA	GG	2275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.122;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=9.024;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-15.034;QD=8.19;ReadPosRankSum=-2.009;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:208,70:0.25:278
chr12	11286760	.	T	C	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.909;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=6.782;MLEAC=1;MLEAF=0.500;MQ=55.09;MQRankSum=-13.867;QD=4.01;ReadPosRankSum=0.456;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:205,71:0.26:276
chr12	11286790	rs2600355	A	C	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:157,91:0.37:248
chr12	11286797	.	A	G	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-10.605;QD=7.73;ReadPosRankSum=4.529;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:182,59:0.24:241
chr12	11286807	rs113282241	T	C	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=53.73;MQRankSum=-9.692;QD=7.95;ReadPosRankSum=3.269;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:176,58:0.25:234
chr12	11286820	rs111958076	A	T	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.369;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=53.19;MQRankSum=-8.771;QD=4.36;ReadPosRankSum=0.119;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:167,57:0.25:224
chr12	11338514	rs199861447	GAA	G	539.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=1.973;SOR=2.342;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr12	11338539	rs1650016	C	A	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	11338555	rs1669409	A	T	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	11338613	rs1650017	CA	GG	6861.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	11338781	rs1669413	C	A	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr12	11338957	rs5020531	A	G	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	11338983	rs1650019	T	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	11339020	rs35969491	T	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	11418954	rs1896551	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	11421093	rs61463237	T	TGGG	4174.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	11461292	rs1052808	C	G	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	11461706	rs12308381	G	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-5.141;QD=3.74;ReadPosRankSum=-1.156;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:118,38:0.24:156
chr12	11461802	rs12829245	G	A	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:63,91:0.59:154
chr12	11461836	rs6488386	T	C	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	11462275	rs1834857	A	G	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	11506211	rs76504934	A	C	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.27;QD=26.07;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	11506749	.	T	C	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.027;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=12.207;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-8.820;QD=2.75;ReadPosRankSum=-1.280;SOR=1.588;set=HC	GT:AD:AF:DP	0/1:179,34:0.16:213
chr12	11506774	rs202083397	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=16.074;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-7.889;QD=1.09;ReadPosRankSum=-5.274;SOR=1.797;set=HC	GT:AD:AF:DP	0/1:171,18:0.10:189
chr12	11506893	rs10845341	C	T	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.07;QD=26.42;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	11546742	rs201044388	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=-2.001;QD=2.21;ReadPosRankSum=2.536;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:89,26:0.23:115
chr12	11546749	.	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=53.74;MQRankSum=-3.518;QD=0.30;ReadPosRankSum=0.057;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:94,10:0.10:104
chr12	11803220	rs2856305	A	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	11903726	rs199664048	CTTTTTTTTTTTTTTT	C	1300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=14.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.26;ReadPosRankSum=1.380;SOR=3.086;set=HC	GT:AD:AF:DP	0/1:2,32:0.94:34
chr12	11904752	rs2856338	T	C	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr12	11904767	rs10845410	C	T	2220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.47;ReadPosRankSum=2.106;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:24,54:0.69:78
chr12	11904770	rs2724599	A	T	2156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.65;ReadPosRankSum=0.767;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,54:0.69:78
chr12	11904983	rs2724600	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr12	12044393	rs71435871	T	TTA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.170;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr12	12230938	rs1641721	C	G	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	12240199	rs879732	C	T	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	12247594	rs11054682	A	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=2.064;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:141,56:0.28:197
chr12	12247616	rs11054683	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:150,64:0.30:214
chr12	12247921	rs71435888	AT	A	778.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.060;QD=9.06;ReadPosRankSum=-0.426;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:25,61:0.71:86
chr12	12251711	rs2448031	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr12	12251761	rs1797646	C	G	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,77:0.67:115
chr12	12252078	rs1797647	T	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr12	12265022	.	A	AT	1476.73	.	AC=1;AF=0.500;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	0/1:58,82:0.59:140
chr12	12265118	rs55833207	CA	C	496.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.58;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	12397668	rs10219768	T	A	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	12397668	.	TTA	ATT	2432	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=6;NR=44;PP=2432;QD=49.7093574972;SC=TCAAATCGGTTTAAGTGAGCA;SbPval=0.51;Source=Platypus;TC=52;TCF=6;TCR=46;TR=50;WE=12397678;WS=12397658;set=Platypus	GT:AD:AF:DP	1/1:2,50:0.96:52
chr12	12397670	rs10219748	A	T	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	12483275	rs1861676	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr12	12483713	rs4763282	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:136,67:0.33:203
chr12	12483927	rs4763818	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr12	12510097	rs10772552	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr12	12618715	rs967648	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr12	12630346	rs12815760	G	A	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:166,104:0.39:270
chr12	12794839	.	G	GA	39	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=10;HapScore=2;MGOF=0;MMLQ=22;MQ=60.0;NF=4;NR=1;PP=39;QD=10.2;SC=ATACTAAACTGAAAAAAAAAA;SbPval=0.71;Source=Platypus;TC=18;TCF=14;TCR=4;TR=5;WE=12794847;WS=12794829;set=Platypus	GT:AD:AF:DP	1/0:13,5:0.28:18
chr12	12814818	rs4763862	C	T	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	12815008	.	C	T	2864.77	.	AC=1;AF=0.500;AN=2;DP=184;set=Intersection	GT:AD:AF:DP	0/1:60,124:0.67:184
chr12	12967127	rs1051374	C	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:276,135:0.33:411
chr12	12967264	rs3741826	C	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr12	12977400	rs1010878	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr12	12980446	rs12425168	G	T	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr12	13028653	rs10845659	A	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	13061294	rs2075288	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:233,108:0.32:341
chr12	13101454	rs7294444	G	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr12	13102605	rs4630382	G	A	5473.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:130,246:0.65:376
chr12	13136615	rs759601	C	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:225,108:0.32:333
chr12	13136623	rs735689	T	C	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:114,222:0.66:336
chr12	13136729	rs2052329	G	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:119,55:0.32:174
chr12	13142174	rs850918	C	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	13153126	.	C	CGGCGGCAGGGCGGCAG	2421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=61.52;MQRankSum=5.291;QD=25.23;ReadPosRankSum=0.814;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:28,68:0.71:96
chr12	13153388	rs147879664	G	GGCAGCAGTGCAGCAGT,GGCAGCAGTCCAGCAGTGCAGCAGT	2138.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=40;set=Intersection	GT:AF:DP	1/2:0.19,0.81:37
chr12	13153773	rs1291364	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	13154077	rs67498669	C	T	151.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.89;ReadPosRankSum=-0.000;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr12	13154105	rs9919709	A	T	122.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	13154123	rs61912779	G	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	13154582	rs59113920	CG	C	1705.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr12	13154790	rs1291363	G	C	4571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=14.24;ReadPosRankSum=-2.762;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:125,196:0.61:321
chr12	13154911	rs1291362	A	G	6189.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:179,290:0.62:469
chr12	13155166	rs1291361	G	T	5387.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:120,225:0.65:345
chr12	13211212	rs6488582	G	A	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	13214537	rs3741818	A	G	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	13215685	rs2200498	C	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	13219556	rs3803096	C	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:75,34:0.31:109
chr12	13221524	rs190089253	C	T	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:166,78:0.32:244
chr12	13221606	rs1386005	T	C	8327.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr12	13256353	rs10772620	A	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:125,76:0.38:201
chr12	13294280	rs7978768	C	A	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	13369196	rs8885	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	13526328	rs17821405	G	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.076;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:78,22:0.22:100
chr12	13529068	rs4763975	A	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr12	13529401	rs7957232	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr12	13717508	rs1806201	G	A	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:165,98:0.37:263
chr12	13720272	rs4764010	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	13768354	rs1468845	C	T	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	13769664	rs1805199	T	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.566;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:59,22:0.27:81
chr12	13769725	rs1805536	G	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr12	13828659	rs11055581	T	C	4952.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:126,216:0.63:342
chr12	14577892	rs2231909	A	T	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	14579235	rs11055969	A	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	14579463	rs200611526	CT	C	143.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=1.506;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr12	14590981	rs10734876	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	14591220	rs4479040	G	A	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	14599904	.	C	CTT	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.271;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr12	14628705	rs7298275	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	14634392	rs140044044	C	CAGTT	749.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	14649196	rs61754409	A	G	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:92,195:0.68:287
chr12	14656768	rs1600	G	C	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	14664595	rs10846013	A	G	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	14688644	rs7957558	C	T	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	14689451	rs1345531	T	C	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	14694993	rs1862014	G	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	14720366	rs10846023	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	14720554	rs147342083	GGCA	G	5525.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	14720583	rs7954623	T	C	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	14769468	rs1558795	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	14774849	rs7302418	T	A	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr12	14781503	rs4764105	A	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	14794062	rs10772800	G	A	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	14804994	rs7313027	G	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	14822855	rs7314345	G	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	14827463	rs3217157	AATC	A	13659.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr12	14829893	rs1420635	A	C	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	14832830	rs11336448	CT	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.959;QD=12.07;ReadPosRankSum=-0.665;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr12	14834421	rs56944147	GA	G	13069.73	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	14834427	rs58911033	G	T	13152.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	14923522	rs12818627	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	14927825	rs6645	C	G	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:43,76:0.64:119
chr12	14947675	rs34868934	TA	T	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.986;QD=6.93;ReadPosRankSum=-0.841;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr12	14949720	rs71438330	C	CA	595.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr12	14959391	rs2241221	T	C	5578.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:129,234:0.64:363
chr12	14975721	rs11610238	C	T	252.53	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr12	14976063	rs7304054	A	G	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:50,113:0.69:163
chr12	14976178	rs7307438	T	A	4395.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:103,190:0.65:293
chr12	14976417	rs139293175	CTA	C	7166.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:95,179:0.65:274
chr12	14993439	rs11276	C	T	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,50:0.58:86
chr12	14993608	rs3088189	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:29,63:0.68:92
chr12	14993854	rs1861698	A	G	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:67,162:0.71:229
chr12	15034996	rs2430735	T	A	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	15035081	rs4236	T	C	3349.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:88,149:0.63:237
chr12	15037187	rs11393307	T	TA	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	15038788	rs1800801	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr12	15067511	rs148149515	T	TGTGTGC	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=5.501;QD=9.02;ReadPosRankSum=-0.421;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr12	15073831	rs2445382	G	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:70,49:0.41:119
chr12	15081897	rs2445371	A	C	11385.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.70;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr12	15081897	.	AG	CA,CG	2370	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=6;MMLQ=23;MQ=60.0;NF=72,122;NR=99,163;PP=2370,1420;QD=14.1723267536;SC=CCAGCTGGCAAGTCTCCTTCA;SbPval=0.57;Source=Platypus;TC=286;TCF=122;TCR=164;TR=171,285;WE=15081906;WS=15081887;set=Platypus	GT:AF:DP	0/1:0.60:286
chr12	15081898	rs11056243	G	A	3952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.798;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:116,186:0.62:302
chr12	15082004	rs11056244	T	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr12	15090762	rs3748296	G	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	15090837	rs3748297	A	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr12	15091221	rs11432737	A	AT	8256.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	15095707	rs10772822	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	15100683	rs2075265	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	15100684	rs7979291	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	15101034	rs72428197	GCACACACACA	G,GCGCGCACACACACACACA	914.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	1/2:0.59,0.41:22
chr12	15101072	rs4764142	T	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.03;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	15102681	rs28683560	G	C	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:29,64:0.69:93
chr12	15103605	rs2430711	A	G	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	15131995	rs2233623	C	A	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	15262179	rs1055151	G	A	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:44,84:0.66:128
chr12	15273932	rs2247574	C	T	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:73,122:0.63:195
chr12	15273957	rs2247568	A	G	3909.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:97,169:0.64:266
chr12	15290791	.	T	G	570.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr12	15652330	rs4764197	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	15652636	rs3838355	AAT	A	180.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	15656832	rs4764199	T	A	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	15661441	rs888163	A	G	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	15677992	rs960666	A	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr12	15679120	rs6488782	C	A	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-0.142;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:141,76:0.35:217
chr12	15679208	rs7134888	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr12	15702202	rs10541885	AAT	A	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.796;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.916;QD=0.56;ReadPosRankSum=2.283;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:103,12:0.10:115
chr12	15731724	rs5796639	T	TG	6334.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	15731744	rs1024843	C	T	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	15733669	rs3748299	G	A	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:70,145:0.67:215
chr12	15742313	rs34222753	GA	G	534.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.871;QD=12.42;ReadPosRankSum=-0.544;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:6,37:0.86:43
chr12	15748020	rs1558787	C	T	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	15776223	.	TA	T	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.264;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:97,33:0.25:130
chr12	15777486	rs4623959	T	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	15803992	rs4237955	T	C	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	15813449	rs146612691	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr12	15818880	rs4363660	T	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	15822229	rs4237957	A	C	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	15822244	rs4237958	T	C	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	16036261	rs10734889	C	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	16050808	rs10772879	T	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	16055926	rs71042275	G	GT	865.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	16185463	rs57961487	CTT	C	699.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr12	16189542	rs2290978	T	C	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=1.288;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	16342622	rs111967344	G	A	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.546;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=0.341;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:70,54:0.44:124
chr12	16347308	rs3942536	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:224,100:0.31:324
chr12	16369828	rs1671511	A	T	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	16392545	rs11056836	C	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.536;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	16397677	rs1527014	G	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	16397734	rs1852450	C	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.598;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:88,24:0.21:112
chr12	16397746	rs1852451	C	T	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	16430284	rs1671487	G	A	9839.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr12	16510395	rs2075239	T	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	16713487	rs3214385	A	AT	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=2.452;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:55,25:0.31:80
chr12	16713545	rs2302690	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr12	16743165	rs2058798	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	16743217	rs2058799	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	16747034	rs10846380	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:67,25:0.27:92
chr12	17142546	rs7955087	T	C	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	18234422	rs11043839	C	A	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=0.916;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:167,70:0.30:237
chr12	18234461	rs11043840	T	A	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=7.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-0.531;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:54,38:0.41:92
chr12	18234461	.	T	TA	590	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=16;HapScore=3;MGOF=21;MMLQ=22;MQ=59.45;NF=3;NR=42;PP=590;QD=13.1777777778;SC=CTCTTTTTTTTAAAAAAAAAA;SbPval=0.48;Source=Platypus;TC=104;TCF=6;TCR=98;TR=45;WE=18234470;WS=18234442;set=Platypus	GT:AD:AF:DP	1/0:59,45:0.43:104
chr12	18237688	rs6486881	C	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:61,28:0.31:89
chr12	18238787	rs66716140	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.71;ReadPosRankSum=-0.914;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	18435398	rs35277916	GCCC	G	1650.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:123,49:0.28:172
chr12	18435452	rs11044004	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr12	18473729	rs11044026	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	18491597	rs372044072	CTGTG	C	117.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.210;QD=19.62;ReadPosRankSum=0.210;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr12	18496400	rs375015643	AAC	A	55.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	18499777	rs10770357	C	G	7901.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr12	18534672	.	CTG	C	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=1.724;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:255,32:0.11:287
chr12	18641326	rs7137852	T	C	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	18720057	rs11044189	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	18747387	rs12827507	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr12	18747528	rs11044211	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr12	18762450	rs2277328	A	C	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.599;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:124,49:0.28:173
chr12	18801017	rs501379	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	18848131	rs1487070	T	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	18849071	rs3825081	G	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr12	18849256	rs149450833	CTATATATA	C,CTA	383.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=15;set=Intersection	GT:AF:DP	1/2:0.50,0.50:10
chr12	18854540	.	ATCCTCCTCCTCC	A,ATCC	5015.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=193;set=Intersection	GT:AF:DP	1/2:0.43,0.57:124
chr12	18865941	.	T	C	3827.77	.	AC=1;AF=0.500;AN=2;DP=221;set=Intersection	GT:AD:AF:DP	0/1:57,163:0.74:220
chr12	18872325	rs10841078	G	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	18889149	rs12300257	T	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr12	18889517	rs144525318	A	AAATTTGAG	586.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr12	18889547	rs10841080	C	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr12	18889565	rs12306752	A	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr12	18890472	rs5796766	GT	G	1891.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	18891079	rs1075421	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr12	19282670	rs28512290	C	T	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:51,77:0.60:128
chr12	19283135	rs61913270	C	A	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	19406863	rs6486942	C	T	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	19410474	rs10706958	AT	A	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.924;QD=7.29;ReadPosRankSum=2.245;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:30,34:0.53:64
chr12	19418588	rs6486945	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	19418874	rs7316780	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	19427357	rs58232879	C	G	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	19428009	rs2279537	T	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr12	19441082	rs7960486	C	A	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=1.550;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:61,34:0.36:95
chr12	19512563	rs11044515	G	A	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	19522484	rs113006194	A	AAAAG	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	19522494	rs57357758	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr12	19592600	rs143333997	GGGA	G	727.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	19626311	.	AT	A	2132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.06;ReadPosRankSum=-0.080;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:22,54:0.71:76
chr12	19626315	.	ATTT	A	2171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=3.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.58;ReadPosRankSum=-0.677;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:21,55:0.72:76
chr12	19626322	rs11044583	T	A	2191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.02;ReadPosRankSum=-0.390;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:19,54:0.74:73
chr12	19626326	rs12370241	T	A	2089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.73;ReadPosRankSum=-0.362;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:18,50:0.74:68
chr12	19646943	rs66556640	CTGGTGTATTTCA	C	769.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr12	19873411	rs4301848	G	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	19873497	rs4369485	A	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	19873577	rs12306804	C	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr12	20522796	rs141457914	T	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr12	20709733	rs4762972	G	A	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	20724891	rs76490593	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	20766559	rs10743380	C	T	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:182,79:0.30:261
chr12	20766685	rs7308381	G	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr12	20769026	rs68125264	TTAGA	T	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	20774464	rs10743381	A	G	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	20774539	rs10734705	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	20783099	rs7304499	A	C	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	20786787	rs4265636	T	C	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	20786807	rs3858661	T	G	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:23,64:0.74:87
chr12	20786813	rs78782960	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr12	20786841	rs10743382	T	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	20787783	rs151261214	GC	G	289.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:49,16:0.25:65
chr12	20788137	rs11045352	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	20801855	rs9284155	C	T	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=35.11;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	20801861	rs71786809	C	CTT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.120;QD=5.46;ReadPosRankSum=-1.430;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	20803323	rs9804769	A	C	283.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	20803549	rs10743384	T	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr12	20893052	rs2037154	C	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr12	20893108	rs2271656	C	T	2865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-0.458;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:63,127:0.67:190
chr12	20893354	rs12368368	G	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr12	20903757	rs10841611	T	C	5051.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:134,224:0.63:358
chr12	20903865	rs10841612	G	A	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:47,99:0.68:146
chr12	20905250	rs6487138	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr12	20968828	rs10734710	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr12	21011480	rs4149117	T	G	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr12	21011581	rs4149118	G	A	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	21013948	rs3764009	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	21014139	rs3764008	C	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	21014163	rs3764007	T	A	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	21015610	rs1036261	A	G	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	21015760	rs7311358	G	A	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	21031020	rs2417938	A	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	21032242	rs4149142	T	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	21036411	rs2053098	A	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	21051489	rs4149153	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	21054369	rs3764006	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	21054918	rs2082518	T	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	21065235	rs142241896	TTTTATTTATTTATTTA	T	760.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.69;QD=42.26;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	21065365	rs10841706	C	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;QD=25.56;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	21065429	rs34721125	AT	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.312;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr12	21168758	rs34168692	T	TA	277.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21176135	rs1546308	T	C	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	21176247	rs1546307	A	G	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	21196578	.	C	T	30.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:25,5:0.17:30
chr12	21201572	.	A	ATG	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.97;ReadPosRankSum=-0.652;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	21201663	rs11045689	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	21220349	rs1910163	A	T	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	21317791	rs4149032	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr12	21317810	rs4149033	A	G	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	21317922	rs4149034	G	A	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=5.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=-0.209;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:39,68:0.64:107
chr12	21327652	rs34728625	T	TA	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.636;QD=11.11;ReadPosRankSum=1.766;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr12	21331599	rs4149057	T	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	21331987	rs2291076	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	21590621	rs2058464	T	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr12	21590788	rs2110165	C	A	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:96,164:0.63:260
chr12	21593404	rs4762702	G	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	21602437	rs147619410	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr12	21602792	rs71537701	CTTTTTTTTTTTT	C,CTTTTTTTTTTTTT	388.77	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	1/1:0.91:11
chr12	21608891	rs2302500	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	21609127	rs4367993	T	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	21609222	rs4388943	G	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	21609733	rs7964140	A	G	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr12	21609761	rs34335650	C	CAACT	3354.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr12	21609907	rs7964568	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:25,66:0.73:91
chr12	21614141	rs151311552	CAATTT	C	814.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr12	21615664	rs3782660	T	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=1.118;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr12	21615917	rs34595378	C	CAG	2485.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:32,65:0.67:97
chr12	21615935	rs10841819	A	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.033;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.596;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:21,38:0.64:59
chr12	21621737	rs61926324	A	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	21623122	rs13035	T	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,41:0.34:120
chr12	21623284	.	C	CAA	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=10.581;MLEAC=1;MLEAF=0.500;MQ=51.50;MQRankSum=-4.461;QD=3.31;ReadPosRankSum=0.035;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:45,25:0.36:70
chr12	21624308	rs56736899	TA	T	786.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr12	21624309	rs11046076	A	T	395.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr12	21626324	rs917852	A	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=6.869;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	21626330	rs917853	C	A	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=7.168;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	21627672	rs35159698	C	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	21628320	rs10841831	C	T	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	21628336	rs10841832	G	A	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	21628791	rs3752648	T	C	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	21628812	rs10160843	G	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	21629987	rs917854	T	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	21629993	rs5796903	A	AC	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	21639385	rs369525826	TA	T	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=-0.085;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr12	21639528	rs10712738	GA	G	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.543;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr12	21639591	rs7964104	G	C	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	21644428	.	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.594;QD=1.32;ReadPosRankSum=0.587;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr12	21652641	rs12423412	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	21654831	rs1060126	G	T	6603.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:144,299:0.67:443
chr12	21657590	rs67392337	AT	A	9097.73	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:138,281:0.67:419
chr12	21657618	rs11046089	T	A	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:105,197:0.65:302
chr12	21659973	rs16923862	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr12	21661241	rs61926330	A	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr12	21661508	rs11046091	A	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr12	21679652	rs10564739	CTT	C	649.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr12	21680609	rs7966780	C	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	21681819	rs2306178	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr12	21684029	rs3765093	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	21689882	rs10431213	T	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr12	21692166	rs36023861	CA	C	485.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.12;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	21699491	rs3765089	C	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	21711009	rs7967170	C	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	21711111	rs7977474	G	C	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	21711381	rs7977648	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-1.730;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr12	21711385	rs7977846	G	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	21712545	rs1871136	A	G	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	21712574	rs1871137	C	T	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	21712728	rs111250042	GACATTCTTTGAAATT	G	1008.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	21713308	rs4639981	T	A	9391.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr12	21713402	rs2306180	T	C	10249.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr12	21715801	rs1473421	A	G	4011.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:81,176:0.68:257
chr12	21716055	rs1473422	A	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr12	21716098	rs1473423	T	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr12	21727315	rs7963756	C	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	21733121	rs2126887	T	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	21757272	rs153944	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	21789968	rs1677134	G	T	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	21791272	rs1650289	T	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	21791410	rs71053332	TA	T	772.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.390;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=0.662;QD=15.77;ReadPosRankSum=0.759;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:3,46:0.94:49
chr12	21791455	rs1427830	A	T	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=28.39;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	21791565	rs1677129	A	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	21794865	rs1626023	A	T	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	21796814	rs4762862	G	A	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	21797029	rs1650294	A	G	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	21799999	rs1540405	G	C	7216.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr12	21807432	rs1677078	T	C	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	21807640	rs1650315	G	A	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	21807687	rs7953579	C	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	21995555	rs1643235	C	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	22005510	rs704183	A	G	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	22014161	rs2418018	C	A	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	22014163	rs2418019	C	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	22014165	rs2418020	C	A	360.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	22016004	rs4148670	GA	G	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.733;QD=1.98;ReadPosRankSum=0.961;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr12	22017422	rs697250	A	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	22017486	rs697251	C	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	22035873	rs1356368	C	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr12	22035883	rs1283802	T	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr12	22047151	rs704216	G	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	22047174	rs704217	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr12	22063115	rs10770865	A	G	10754.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr12	22063251	rs35857705	CA	C	1807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.373;QD=8.37;ReadPosRankSum=0.968;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:76,140:0.65:216
chr12	22063337	rs4148656	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr12	22063737	rs4762719	G	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	22063749	rs4762720	T	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	22063971	rs4148654	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr12	22065699	rs3835048	G	GA,GAA	650.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=27;set=Intersection	GT:AF:DP	1/2:0.32,0.68:25
chr12	22068849	rs3759236	G	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr12	22078245	rs2900493	G	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr12	22078838	rs2277405	T	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr12	22086976	rs6487252	A	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	22089348	rs4586220	G	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	22215194	rs375987416	CT	C	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.879;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr12	22354921	rs704219	A	G	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	22401911	rs4762896	C	T	6073.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:152,272:0.64:424
chr12	22440281	rs2287166	A	T	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	22440315	rs2072542	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	22489150	rs3809202	A	G	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	22602796	rs2063573	A	G	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	22606738	rs12424580	G	C	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	22612291	.	C	CA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.782;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr12	22676633	rs377557729	TA	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.039;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr12	22796994	rs11429701	A	AT	5175.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	23689301	rs4636755	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	23696045	rs76722400	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr12	23696116	rs7485662	C	T	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	23757245	rs1479452	C	T	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	23915547	rs71059921	G	GA	529.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=0.574;QD=18.27;ReadPosRankSum=1.283;SOR=0.499;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr12	23998888	rs7980561	T	C	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	24102665	rs141363242	CCT	C	425.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.20;ReadPosRankSum=1.200;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr12	24102700	.	GTCTCTC	G	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	24103911	rs72058866	GCACA	G,GCA	953.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=8.023;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=0.497;QD=23.26;ReadPosRankSum=0.901;SOR=4.863;set=HC	GT:AD:AF:DP	1/2:3,12,26:0.29,0.63:41
chr12	24985557	rs16928089	T	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr12	24985637	rs3736211	T	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:141,89:0.39:230
chr12	25031449	rs6487436	A	G	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	25047480	rs61127951	GA	G	826.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr12	25047517	rs60686976	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr12	25147300	rs699030	G	C	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	25148755	rs864161	C	G	10830.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr12	25242595	rs7969931	C	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr12	25242776	rs10743538	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	25243115	rs1908946	G	C	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:32,72:0.69:104
chr12	25249743	rs10842464	T	C	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	25249785	rs10771166	T	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	25253983	rs11047833	T	A	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	25254975	rs7303889	A	C	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,224:1.00:225
chr12	25257166	rs12828225	T	A	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr12	25257182	rs34133737	GA	G	946.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr12	25261735	rs859146	G	T	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.44;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	25261759	.	T	TAAAAAAAAAAAAAAAAAAAA	536.74	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=59.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	25264689	.	G	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-1.708;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr12	25272027	rs2291365	A	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:18,57:0.76:75
chr12	25272297	rs2291364	A	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr12	25274593	rs2220195	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	25297713	rs7971062	C	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	25299921	rs11047863	G	A	10993.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr12	25302481	rs10842485	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	25311489	rs10842496	G	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr12	25343516	rs10842501	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr12	25343707	rs10842502	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	25362217	rs9266	A	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr12	25368462	rs4362222	C	T	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr12	25388290	rs7133635	G	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	25671759	rs1479500	T	A	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	25673079	rs1382849	C	T	109.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	25678995	rs199719770	T	TA	896.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr12	25679932	rs1705419	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	25699523	rs278990	A	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	25702544	rs17422350	A	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr12	26231843	rs7133685	G	T	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	26580814	rs1818135	T	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr12	26581306	rs4963995	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:71,27:0.28:98
chr12	26596618	rs2220406	C	T	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	26639341	.	C	T	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=0.303;SOR=1.842;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr12	26639346	rs36049222	T	TA	704.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.941;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=0.684;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:3,25:0.89:28
chr12	26639360	rs376239453	C	A	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.067;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=22.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-1.025;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	26648092	rs2230381	C	T	6630.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	26709495	.	T	TGTGTGTG	615.73	.	AC=1;AF=0.500;AN=2;DP=30;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr12	26709497	rs199663645	T	G	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.154;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=1.281;QD=23.25;ReadPosRankSum=-0.998;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	26709497	.	TTT	GTG	875	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=10;HapScore=1;MGOF=15;MMLQ=28;MQ=59.6;NF=1;NR=7;PP=875;QD=116.058484358;SC=CTATTTTTTTTTTTGTGTGTG;SbPval=0.47;Source=Platypus;TC=26;TCF=2;TCR=24;TR=8;WE=26709507;WS=26709479;set=Platypus	GT:AD:AF:DP	1/0:18,8:0.31:26
chr12	26755546	rs3736185	C	T	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.513;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-1.401;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:162,55:0.25:217
chr12	26777379	rs2880875	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	26784850	rs2230372	G	A	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:92,150:0.62:242
chr12	26806955	rs2230380	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.095;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr12	26809177	rs2880877	C	T	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr12	26809316	rs2230379	G	A	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:91,142:0.61:233
chr12	26810777	rs2291264	T	C	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:86,173:0.67:259
chr12	26810816	rs2291263	T	G	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:67,149:0.69:216
chr12	26812245	rs2306549	G	A	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:52,82:0.61:134
chr12	26816496	rs1375656	T	C	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	26816831	rs2306548	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr12	26819095	.	A	ATAGATAGATAGATAGATAGATAGAT,ATAGATAGAT	165.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=27;set=Intersection	GT:AF:DP	0/1:0.60:15
chr12	26834804	rs111626763	T	TACTC	3795.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:61,93:0.60:154
chr12	26835085	rs10842774	T	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr12	26835427	rs3830262	ATG	A	7269.73	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:126,192:0.60:318
chr12	26848410	rs1982385	A	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	26848663	rs3830260	A	AT	1860.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	26868322	rs1900941	T	C	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=5.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-0.252;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:135,63:0.32:198
chr12	26869233	rs7957289	C	T	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:128,55:0.30:183
chr12	26874138	rs11407207	G	GT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=1.558;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr12	26875235	rs2291262	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,30:0.36:84
chr12	26875565	rs2291261	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr12	26878577	rs17480784	C	G	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=1.897;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:148,55:0.27:203
chr12	26878766	rs17480798	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr12	27059149	rs1488053	C	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	27059224	rs1488052	G	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	27059422	rs1488051	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	27064232	rs3210635	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:110,60:0.35:170
chr12	27066350	rs3736227	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:128,66:0.34:194
chr12	27072129	rs950158	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.856;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	27072152	.	A	T	71	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=24;MQ=60.0;NF=2;NR=4;PP=71;QD=17.6285354245;SC=TAGAGGAAAGACTATTCAGGC;SbPval=0.72;Source=Platypus;TC=16;TCF=6;TCR=10;TR=6;WE=27072160;WS=27072142;set=Platypus	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	27075705	rs7137176	A	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	27081566	rs2029309	C	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	27087703	rs708158	T	C	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	27117382	rs11048788	G	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	27136626	rs56054487	G	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:61,24:0.28:85
chr12	27152666	rs7314394	T	C	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	27175494	rs3963548	T	C	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	27175640	rs1872191	A	G	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	27179551	rs145100138	CTTATT	C	2302.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	27181513	rs8628	T	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	27234200	rs708165	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	27234999	rs708167	T	C	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	27235381	rs708168	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	27235547	rs138774709	C	CT	69.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.72;ReadPosRankSum=1.242;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	27300420	rs841618	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;MQ=58.97;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	27461984	rs6487599	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	27470682	rs2242185	C	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	27470866	rs6487601	G	A	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	27486168	rs62758860	GA	G	286.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	27533367	rs4964060	A	G	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	27553794	rs2927028	C	T	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	27569025	rs1256955	G	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	27623433	rs35052632	G	GT	1471.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	27623490	rs776199	A	G	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	27623558	rs395098	C	T	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:187,92:0.33:279
chr12	27623728	rs396407	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:61,34:0.36:95
chr12	27623751	rs411432	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr12	27625823	rs386428	A	T	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	27625879	rs381905	G	A	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.53;SOR=1.543;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	27625887	rs401739	T	C	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	27627805	rs411816	G	A	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	27647420	rs149908760	T	TTTATTA	452.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;QD=45.27;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	27788021	rs2075378	G	A	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	27800503	rs7959186	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	27800576	rs34792131	C	CT	1887.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	27800746	rs2194816	G	T	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	27807906	rs7979973	G	A	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	27811649	rs10771354	G	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	27813754	rs7132997	A	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	27813903	rs7133222	C	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	27813961	rs7133231	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	27813973	rs7133328	C	T	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	27813981	rs7133545	G	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	27814085	rs6487629	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	27817525	rs7135567	T	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr12	27820302	rs2033024	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr12	27826780	rs2052673	T	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	27832308	rs10743607	G	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	27841925	.	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=0.000;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:114,27:0.19:141
chr12	27845924	rs3764010	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:51,18:0.26:69
chr12	27849796	rs929949	A	G	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	27863693	rs17552080	C	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr12	27915718	rs10842975	A	T	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:68,129:0.65:197
chr12	28111319	rs34525777	C	CA	182.94	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr12	28115095	rs12812817	C	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	28122485	rs6242	T	A	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:334,221:0.40:555
chr12	28336713	rs61920228	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr12	28336969	rs71438734	T	TAAATGCAAAAAGAAATGAA	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr12	28412372	rs11049488	G	A	3230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=5.567;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.084;QD=13.46;ReadPosRankSum=0.706;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:88,152:0.63:240
chr12	28412398	.	G	GT	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.811;QD=1.35;ReadPosRankSum=-0.354;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:98,31:0.24:129
chr12	28412415	rs11049489	T	C	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.526;QD=3.39;ReadPosRankSum=0.662;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:95,39:0.29:134
chr12	28457618	rs6487674	A	C	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	28457802	rs10843150	A	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	28544464	rs3741760	G	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr12	28605370	rs144054230	G	GCAGT	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr12	28605426	rs10771427	G	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-0.354;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr12	28636830	rs1511551	G	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr12	28637115	rs1511550	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr12	28724216	rs6487691	T	C	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.614;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:44,80:0.65:124
chr12	28726042	rs6487692	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr12	29542539	.	C	T	2102.77	.	AC=1;AF=0.500;AN=2;DP=345;set=Intersection	GT:AD:AF:DP	0/1:222,121:0.35:343
chr12	29586867	.	T	TA	197.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	29593768	rs66808023	GA	G	280.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	29593769	rs2304458	A	C	712.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr12	29604392	rs1347570	C	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chr12	29607931	rs2060570	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr12	29608449	rs1369904	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr12	29618273	rs10771537	G	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr12	29628016	rs2043623	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr12	29630081	rs7975356	G	A	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	29639186	rs3847680	T	C	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:127,70:0.36:197
chr12	29642459	rs61918687	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr12	29650361	rs10771544	A	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	29650702	rs822879	C	T	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.77;SOR=1.737;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	29667659	rs299438	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	29667680	rs299437	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	29721945	rs2254945	C	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	29813709	rs199655975	G	GTA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.59;ReadPosRankSum=-0.414;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	29819161	rs11395199	C	CT	1118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.491;QD=19.29;ReadPosRankSum=-0.278;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:14,44:0.76:58
chr12	29819183	rs190101456	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr12	29921074	rs302316	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	29936613	rs184221	T	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	30783743	rs2278558	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.456;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr12	30809492	rs7974489	G	A	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	30809648	rs34119940	T	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr12	30814043	rs67741303	CTATTA	C	311.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr12	30814259	rs10771753	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr12	30815157	rs2118780	A	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	30815503	rs73077877	T	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr12	30818081	rs10843807	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr12	30818406	rs10843808	T	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	30822240	rs7955420	C	A	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=0.263;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr12	30823971	rs1054426	A	G	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:196,88:0.31:284
chr12	30827086	rs2289301	G	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	30829377	rs17560141	C	A	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:64,108:0.63:172
chr12	30841285	rs12809355	G	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr12	30841304	rs77727042	G	A	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.156;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,50:0.69:72
chr12	30843377	rs2289302	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.758;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr12	30848675	rs12809335	C	T	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:201,104:0.34:305
chr12	30864676	rs117164899	G	A	4631.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:64,200:0.76:264
chr12	30867794	rs10843820	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	30868002	rs13656	C	T	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	30872178	rs73079962	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr12	30877391	rs7299800	G	T	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	30878859	rs7304879	G	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	30879088	rs10843822	T	C	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	30881488	rs11406794	C	CA	898.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.032;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.438;QD=13.41;ReadPosRankSum=-0.469;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:9,58:0.87:67
chr12	30881809	rs2304630	T	C	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	30886435	rs11613738	G	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr12	30888001	rs12146709	T	C	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:334,188:0.36:522
chr12	30893875	rs10771762	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr12	30906358	rs17688567	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr12	30948824	rs73082102	G	C	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr12	30948848	rs256653	G	C	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:72,134:0.65:206
chr12	30949206	rs256654	A	G	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:82,109:0.57:191
chr12	31117041	rs111666688	AGTGGGAGGGGCTGAGGCT	A	1879.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr12	31131712	rs35097	T	C	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	31132479	rs35096	A	C	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	31135478	rs35089	T	C	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	31135579	rs2075333	T	C	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	31135905	rs888473	A	T	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	31237026	rs28559720	A	G	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:93,107:0.54:200
chr12	31237372	rs3930906	A	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr12	31237700	rs3881296	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;MQ=57.55;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr12	31238075	rs4931428	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr12	31240862	rs7308754	A	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr12	31240925	rs7308773	A	G	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:94,129:0.58:223
chr12	31240960	rs7309189	G	A	2998.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:99,136:0.58:235
chr12	31242271	rs2005896	G	A	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:65,71:0.52:136
chr12	31242314	rs2005897	T	C	2923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-2.110;QD=12.66;ReadPosRankSum=-1.168;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:98,133:0.58:231
chr12	31242399	rs3881298	T	C	4061.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:184,197:0.52:381
chr12	31242440	rs2075318	A	G	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:142,152:0.52:294
chr12	31244846	rs1808348	C	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:53,80:0.60:133
chr12	31244924	rs1808349	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr12	31245741	rs2075321	A	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr12	31245916	rs61273537	C	T	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:32,69:0.68:101
chr12	31246371	rs10843882	C	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr12	31246438	rs7970074	T	C	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.91;ReadPosRankSum=0.185;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr12	31249118	rs9788128	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-5.575;QD=2.48;ReadPosRankSum=0.690;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr12	31249244	rs9788048	T	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.955;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=11.271;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-10.427;QD=0.86;ReadPosRankSum=-2.605;SOR=1.698;set=HC	GT:AD:AF:DP	0/1:120,17:0.12:137
chr12	31249861	rs2075322	C	G	5237.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:132,240:0.65:372
chr12	31250669	rs7971579	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr12	31250768	rs2909388	C	T	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:98,62:0.39:160
chr12	31253995	rs1046456	C	T	7733.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:187,358:0.66:545
chr12	31254642	rs7952861	T	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr12	31254701	rs7966366	G	T	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-0.450;QD=14.31;ReadPosRankSum=0.047;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:34,66:0.66:100
chr12	31254752	rs7966272	C	T	2316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-0.420;QD=14.85;ReadPosRankSum=0.651;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:51,105:0.67:156
chr12	31255263	rs10771803	G	A	13685.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:229,352:0.61:581
chr12	31255280	rs61918673	G	A	13817.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:253,362:0.59:615
chr12	31255772	rs58740356	A	AG	1345.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr12	31256075	rs3825318	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr12	31256546	rs1046457	G	A	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:94,126:0.57:220
chr12	31256905	rs1046458	T	C	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr12	31264743	rs4930953	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr12	31264770	rs1053552	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr12	31265823	rs2302848	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	31265872	rs2302849	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr12	31265925	rs2302850	C	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr12	31265983	rs1053534	G	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr12	31266042	rs2302853	C	T	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.972;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-4.524;QD=11.96;ReadPosRankSum=-1.303;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:33,50:0.60:83
chr12	31267744	rs7968684	A	C	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr12	31269189	rs25559	C	CATCAT	700.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr12	31270076	rs58035829	A	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:77,31:0.29:108
chr12	31270080	rs59046327	G	GAAA	954.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,28:0.28:101
chr12	31270149	rs7316147	GC	CA	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	0/1:45,16:0.26:61
chr12	31270171	rs7301557	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr12	31282765	rs2536839	A	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr12	31282784	rs35666624	A	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr12	31283446	rs140298932	T	G	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.30;MQRankSum=-3.348;QD=13.25;ReadPosRankSum=-0.257;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:64,114:0.64:178
chr12	31285101	rs2933405	A	G	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	31285169	rs2287449	A	T	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.66;QD=26.76;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	31286189	rs3844571	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	31288835	rs200865477	G	GA	1487.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	31288884	rs4931444	G	T	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	31288955	rs11051266	G	A	1346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-0.323;QD=8.21;ReadPosRankSum=-1.215;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:94,70:0.43:164
chr12	31297722	rs55758709	C	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	31297871	rs12309295	G	C	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	31298250	rs115596083	A	G	183.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.37;QD=30.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	31300754	rs116358569	T	C	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	31300891	rs56144986	C	A	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	31301888	rs11051274	T	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:116,65:0.36:181
chr12	31359159	rs3065666	C	CAATGGTAA	1549.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr12	31359210	rs2164498	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr12	31539303	rs708200	G	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr12	31545103	rs708218	T	C	305.79	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr12	31545381	rs792874	A	G	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr12	31551350	rs1798769	C	T	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:21,78:0.79:99
chr12	31562359	rs111670680	GA	G	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=61.15;MQRankSum=1.557;QD=7.44;ReadPosRankSum=-0.348;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	31568221	rs793159	C	T	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:37,102:0.73:139
chr12	31577378	rs34764768	A	AT	2018.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:46,108:0.70:154
chr12	31613214	rs138735047	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:109,47:0.30:156
chr12	31648728	rs143241018	GA	G	2394.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:62,127:0.67:189
chr12	31693814	rs1262391	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	31693975	rs34225458	T	TA	1563.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:7,80:0.92:87
chr12	31814741	rs7959989	G	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	31820564	rs201646763	CT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.652;QD=1.99;ReadPosRankSum=-2.265;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr12	31850220	rs2388926	C	T	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	31908050	rs6488005	A	C	14767.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr12	31944691	rs3759294	A	C	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:93,168:0.64:261
chr12	32134064	rs7298803	A	G	7026.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:165,296:0.64:461
chr12	32134240	rs2388982	C	T	7131.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:162,312:0.66:474
chr12	32134638	rs2166807	T	C	11218.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr12	32134926	rs3207618	G	A	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:187,82:0.30:269
chr12	32134943	rs10771894	A	G	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:68,167:0.71:235
chr12	32135441	rs3759301	T	C	9982.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr12	32135938	rs11051718	A	G	5258.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:162,227:0.58:389
chr12	32137512	rs3759299	C	G	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:66,132:0.67:198
chr12	32138410	rs12827942	A	G	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:112,176:0.61:288
chr12	32138924	rs7302975	T	C	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	32138974	rs35804480	CT	C	1423.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	32261435	rs1144715	A	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	32446835	rs261877	G	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	32446901	rs261878	T	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	32458996	rs36092808	T	C	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:80,43:0.35:123
chr12	32639156	rs6488061	C	A	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	32716948	rs371242429	GGGGAGA	G	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.47;ReadPosRankSum=-0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	32716988	rs61926167	T	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=-0.479;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr12	32735236	rs904582	C	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:67,104:0.61:171
chr12	32753219	rs10844251	C	T	154.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	32754367	rs41276676	G	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr12	32755058	rs4931641	T	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=1.343;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr12	32763668	rs1004969	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr12	32772620	rs73083501	C	T	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:39,91:0.70:130
chr12	32777889	rs17539792	T	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr12	32778581	rs11052113	T	C	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:51,86:0.63:137
chr12	32778742	rs17539848	T	G	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:60,113:0.65:173
chr12	32786700	rs59572242	G	A	328.41	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr12	32791796	rs4575368	G	A	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr12	32854602	rs9737752	G	A	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	32890685	rs2177704	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	32945495	rs7956824	C	T	17816.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr12	32945721	rs6488091	G	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	32945769	rs6488092	G	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	32955647	rs7975824	C	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	32974245	rs10772008	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	33049781	rs187291890	G	A	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	33578997	rs141090671	TCA	T	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.640;QD=4.90;ReadPosRankSum=-0.705;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr12	33579494	rs183245886	G	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr12	34175508	rs12367881	T	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	38710583	rs7296576	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	38712142	rs6582584	C	G	17684.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr12	39087687	rs826877	A	C	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	39124173	rs5797589	G	GA	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	40001547	.	G	GT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=14.569;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.146;QD=3.78;ReadPosRankSum=-2.032;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	40011025	rs66517223	CT	C	314.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr12	40037727	rs10735878	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40077028	rs10047563	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	40345185	rs11446411	G	GA	638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-0.774;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:19,39:0.67:58
chr12	40442111	rs10878036	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr12	40619082	rs2256408	G	A	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	40619301	rs2723273	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	40619542	rs2256286	A	G	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	40626230	rs1352879	T	C	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	40626285	rs1352878	C	T	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	40629554	rs2131088	A	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	40631727	rs2723270	T	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr12	40631791	rs10878245	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,55:0.74:74
chr12	40645257	rs7955902	C	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr12	40657537	rs10784461	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr12	40657771	rs10784462	C	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr12	40681142	rs138343113	C	CT	2088.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,76:0.67:114
chr12	40702846	rs7305344	A	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr12	40703087	rs10650388	C	CGT	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr12	40708922	rs1427266	C	T	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr12	40709185	rs721713	A	G	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:59,135:0.70:194
chr12	40713759	rs1896252	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-1.227;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	40713834	rs1427263	C	A	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.580;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	40713873	rs11176013	A	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr12	40713901	rs11564148	T	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr12	40714785	rs10878368	A	T	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:98,126:0.56:224
chr12	40715013	rs7307276	T	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr12	40716015	rs7137665	C	T	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:45,113:0.72:158
chr12	40716037	.	T	TA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=1.025;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:124,26:0.17:150
chr12	40716260	rs10878371	T	C	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:54,94:0.64:148
chr12	40742254	rs10878405	G	A	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:12,44:0.79:56
chr12	40753044	rs111612315	C	CT	126.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	40753303	rs3789330	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr12	40757114	rs10626458	A	ACATG	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr12	40757186	rs11317573	AT	A	861.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr12	40758652	rs3761863	T	C	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-0.120;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:41,72:0.64:113
chr12	40761007	rs3789328	A	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr12	40761358	rs4768238	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr12	40787385	rs7968721	C	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	40793993	rs1820544	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr12	40799969	rs10784595	C	T	2856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.84;ReadPosRankSum=1.355;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:69,75:0.52:144
chr12	40799975	rs10784596	G	C	2831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.98;ReadPosRankSum=-0.142;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:63,72:0.53:135
chr12	40802150	rs1019709	G	A	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:35,104:0.75:139
chr12	40805948	rs10878538	G	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr12	40808832	rs994798	A	G	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,72:0.63:114
chr12	40809846	.	A	G	164.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	40812123	rs10878551	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr12	40815548	rs6581732	T	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	40820208	rs11176575	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr12	40820276	.	ACAAAATGAT	A	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.036;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:173,29:0.14:202
chr12	40821176	rs7955308	G	A	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:132,142:0.52:274
chr12	40821867	rs7958987	G	A	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=0.055;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:83,137:0.62:220
chr12	40822012	rs7960062	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr12	40827479	rs2162470	T	C	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr12	40829824	.	CA	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.615;QD=3.37;ReadPosRankSum=-0.309;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr12	40830599	rs66908734	CGTGTGTGT	C,CGTGTGT	3412.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.72;QD=34.13;SOR=2.007;set=HC	GT:AD:AF:DP	1/2:0,60,40:0.60,0.40:100
chr12	40831845	rs11564166	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr12	40832126	rs10878584	C	T	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:82,187:0.70:269
chr12	40832161	rs11176635	T	C	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:64,131:0.67:195
chr12	40834376	rs10878592	C	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr12	40834918	rs4768261	C	T	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:172,105:0.38:277
chr12	40834955	rs10784618	C	A	3680.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:102,165:0.62:267
chr12	40835026	rs11564142	C	T	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:104,53:0.34:157
chr12	40835596	rs4768263	T	G	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr12	40835734	rs7966110	C	G	3077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=2.497;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:88,142:0.62:230
chr12	40837898	rs11564109	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:71,24:0.25:95
chr12	40838146	rs10784620	A	T	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:94,166:0.64:260
chr12	40838216	rs10784621	T	C	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:62,112:0.64:174
chr12	40839467	rs7972395	A	G	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:54,114:0.68:168
chr12	40839521	rs1346307	T	C	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr12	40840325	rs10878597	T	C	4950.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:109,217:0.67:326
chr12	40840435	rs7315186	T	C	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:124,49:0.28:173
chr12	40841781	rs1820547	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40841832	rs17589334	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr12	40841851	rs17529964	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr12	40841938	rs11176682	G	T	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr12	40842167	rs6581750	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	40844667	rs10784623	A	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	40852398	rs1035811	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	40857126	rs144249723	TAAGTA	T	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	40857214	rs10878623	T	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr12	40857943	rs2933353	A	C	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:25,78:0.76:103
chr12	40858122	rs12228358	G	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr12	40858454	rs1492332	G	A	449.80	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr12	40859036	rs2131202	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:80,116:0.59:196
chr12	40859551	rs2131203	T	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr12	40868767	rs1444222	A	G	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:24,77:0.76:101
chr12	40894745	rs111256342	A	ACTGAGAATAC	2798.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:42,64:0.60:106
chr12	40894964	rs719228	G	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr12	40895026	rs719227	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr12	40895492	.	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.171;QD=0.45;ReadPosRankSum=0.150;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr12	40910157	rs59005564	A	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,43:0.37:117
chr12	40910545	rs1122863	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr12	40911882	rs7300780	G	A	4820.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:146,219:0.60:365
chr12	40912034	rs56036709	T	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,28:0.37:75
chr12	40912162	rs17128391	T	C	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-1.554;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:186,74:0.28:260
chr12	40912684	rs73116206	A	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:158,65:0.29:223
chr12	40912953	rs112863400	G	GA	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr12	40913928	rs17599001	T	C	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr12	40913955	rs35115017	CA	C	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr12	40914127	rs17599042	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr12	40915474	rs58079549	CA	C	2967.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:178,85:0.32:263
chr12	40915480	rs56952712	G	A	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:175,81:0.32:256
chr12	40915786	rs59767957	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr12	40916163	rs56211973	T	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	40916281	rs55642775	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr12	40917312	rs2920820	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:83,35:0.30:118
chr12	40917416	rs11829565	T	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:83,30:0.27:113
chr12	40917532	rs79341017	TAA	T	445.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:81,30:0.27:111
chr12	40917664	rs73119908	T	G	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr12	40919119	rs56226314	T	C	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:248,124:0.33:372
chr12	40919535	rs73119922	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr12	40920110	rs2933351	T	C	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	40920169	rs7302287	T	C	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=0.672;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:128,55:0.30:183
chr12	40920332	rs61382395	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:79,38:0.32:117
chr12	40920872	rs111826232	CT	C,CTT	694.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.570;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.993;SOR=1.096;set=HC	GT:AD:AF:DP	1/2:7,21,34:0.34,0.55:62
chr12	40921902	rs4768287	C	T	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:216,117:0.35:333
chr12	40922091	rs4768288	A	G	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:221,106:0.32:327
chr12	40922104	rs1444220	A	C	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:208,90:0.30:298
chr12	40923073	rs73119944	G	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.301;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:75,25:0.25:100
chr12	40924179	rs73106607	C	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr12	40924191	rs12813020	T	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:36,62:0.63:98
chr12	40924470	rs2588403	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	40925108	rs4768289	A	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr12	40925691	rs17128416	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr12	40925908	rs7139187	A	C	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	40926203	rs11835376	T	A	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr12	40926260	rs17599204	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.451;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr12	40926278	rs11837057	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr12	40926454	rs10506166	T	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:81,46:0.36:127
chr12	40927890	rs7977973	T	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr12	40928476	rs113966690	T	TTCC	690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.254;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.323;QD=13.03;ReadPosRankSum=-0.211;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr12	40929425	rs113734402	TA	T	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=7.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-0.491;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr12	40929482	.	G	GT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-1.021;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr12	40930284	rs1873674	C	G	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:110,44:0.29:154
chr12	40930709	rs7971316	G	C	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	40933367	rs17128443	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr12	40935231	rs11177133	C	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr12	40935517	rs56083241	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,46:0.39:118
chr12	40936512	rs17599666	C	A	1933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.256;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:293,119:0.29:412
chr12	40940392	rs7959536	C	T	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.865;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:166,100:0.38:266
chr12	40942463	rs35702138	GT	G	810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=0.856;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:69,70:0.50:139
chr12	40952895	rs11613339	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr12	40952934	rs1352938	A	G	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	40955544	rs17128462	T	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	40964206	rs7979493	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr12	41303952	.	T	G	71.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr12	41353041	.	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DP=204;set=Intersection	GT:AD:AF:DP	0/1:145,59:0.29:204
chr12	41365345	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.880;QD=0.65;ReadPosRankSum=-0.268;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr12	41582590	rs10879830	G	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	41582603	rs10879831	G	C	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	41588124	rs3847980	A	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	41946315	rs11301675	TA	T	140.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	41946453	rs285585	T	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	41949370	rs285580	T	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	41949507	.	C	G	3345.77	.	AC=1;AF=0.500;AN=2;DP=249;set=Intersection	GT:AD:AF:DP	0/1:86,161:0.65:247
chr12	41957568	rs157971	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	41961535	rs12310084	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr12	41966306	rs12298745	G	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:54,125:0.70:179
chr12	42481732	rs7972986	G	A	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.34;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	42481803	rs824722	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	42499538	rs61942483	TT	AC	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	42503505	rs824695	T	A	1089.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.931;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.79;ReadPosRankSum=-0.472;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:2,48:0.96:50
chr12	42538320	rs112525075	G	A	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-4.345;QD=17.56;ReadPosRankSum=-0.072;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:55,50:0.48:105
chr12	42538334	rs181558534	C	A	1737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-4.365;QD=17.21;ReadPosRankSum=-0.652;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:55,46:0.46:101
chr12	42538340	.	C	A	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-4.369;QD=17.21;ReadPosRankSum=-1.066;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:51,43:0.46:94
chr12	42538349	.	T	C	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-4.110;QD=17.76;ReadPosRankSum=-1.761;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr12	42538352	.	C	A	1425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-4.110;QD=16.77;ReadPosRankSum=-1.938;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr12	42538356	.	T	C	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-4.430;QD=17.26;ReadPosRankSum=-1.230;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr12	42538366	.	AC	TT	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.960;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-4.400;QD=15.58;ReadPosRankSum=-2.032;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr12	42538371	.	G	C	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-4.351;QD=14.70;ReadPosRankSum=-2.610;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr12	42538383	.	A	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-4.500;QD=12.67;ReadPosRankSum=-1.565;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr12	42538386	.	G	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-4.446;QD=10.57;ReadPosRankSum=-2.031;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr12	42538395	.	C	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-4.033;QD=10.18;ReadPosRankSum=-1.954;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr12	42538406	.	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-4.700;QD=5.80;ReadPosRankSum=-2.339;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr12	42538411	.	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=4.430;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-4.327;QD=4.46;ReadPosRankSum=-3.949;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr12	42538412	.	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=4.430;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-4.327;QD=4.37;ReadPosRankSum=-3.951;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr12	42538415	.	C	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=9.209;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-3.666;QD=3.25;ReadPosRankSum=-3.318;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:27,4:0.13:31
chr12	42629550	rs7960176	T	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	42632354	rs75085410	C	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	42717724	rs199988703	G	GA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.816;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.092;QD=0.47;ReadPosRankSum=-0.412;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:104,24:0.19:128
chr12	42717811	rs17091074	A	T	2355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.007;QD=5.64;ReadPosRankSum=-3.769;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:277,141:0.34:418
chr12	42717961	rs3747557	G	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,32:0.36:89
chr12	42726620	rs12581958	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.42;ReadPosRankSum=0.447;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	42729891	rs7296357	T	G	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr12	42737635	rs61471584	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.081;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:46,23:0.33:69
chr12	42737665	rs59844371	G	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr12	42737739	rs58826545	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr12	42749072	rs17091102	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-2.436;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr12	42768646	rs59428088	G	GT	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.858;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=10.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.843;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr12	42778922	rs1669906	G	A	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	42836270	rs1452104	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr12	42839836	rs1669885	A	C	7384.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=7.005;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.76;ReadPosRankSum=0.641;SOR=2.806;set=HC	GT:AD:AF:DP	1/1:1,275:1.00:276
chr12	42853058	rs68074167	GT	G	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr12	42853084	rs12658	C	A	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,31:0.35:89
chr12	42853520	rs1043652	A	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	42862750	rs2708062	T	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	42866065	rs2305422	A	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	43763234	rs1390000	G	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.532;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	43769228	rs10506226	A	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.763;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr12	43769276	rs10880473	T	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:101,43:0.30:144
chr12	43769718	rs7972295	A	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	43770617	rs9804726	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	43817445	rs6582463	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	43819298	rs10785430	G	A	10604.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr12	43819524	.	G	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.603;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.495;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:55,9:0.14:64
chr12	43821335	rs60438862	T	TA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.123;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr12	43823316	rs12308771	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr12	43824011	rs202030722	A	AT	430.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr12	43824042	rs10880489	G	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr12	43824316	rs11182071	A	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:51,86:0.63:137
chr12	43827506	rs140835441	AACACACACAC	A	960.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr12	43833927	rs61925145	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-1.069;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr12	43846272	rs7307955	C	T	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	43847941	rs6582464	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr12	43860526	rs11182088	A	G	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr12	43884330	rs7297170	C	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.123;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr12	43886199	rs11182110	G	C,GAAAAA	862.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.66;QD=45.41;SOR=1.981;set=HC	GT:AD:AF:DP	1/2:0,6,13:0.32,0.68:19
chr12	43886205	rs55821433	G	C	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.000;QD=10.76;ReadPosRankSum=2.708;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr12	43945603	rs275602	A	C	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	44164689	rs1461567	G	A	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:16,72:0.82:88
chr12	44196407	rs10880568	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	44338153	rs6582491	T	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	44926334	rs2270479	T	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:86,40:0.32:126
chr12	45004796	rs2305449	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr12	45004824	rs2305448	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr12	45059237	rs2290353	T	G	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:91,70:0.43:161
chr12	45170006	rs4768572	T	C	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	45621906	rs57127691	GT	G	278.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=12.489;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.596;QD=11.15;ReadPosRankSum=-0.475;SOR=4.038;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr12	45664213	rs10748415	G	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	45695735	rs4140756	C	A	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	45771901	rs36059278	GT	G	863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.170;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:29,66:0.69:95
chr12	45833430	.	C	CTTT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.84;ReadPosRankSum=-0.703;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	46215163	rs2059404	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.147;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	46254499	rs10577231	CAT	C	1032.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,30:0.32:93
chr12	46287170	rs138252675	TTC	T	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.338;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:167,25:0.13:192
chr12	46321514	rs7315731	A	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:51,85:0.62:136
chr12	46322436	rs118114840	C	T	4135.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:133,181:0.58:314
chr12	46367903	rs10880879	T	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr12	46367939	rs11183268	G	T	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=1.935;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:43,61:0.59:104
chr12	46385815	rs11574952	C	T	6328.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:125,275:0.69:400
chr12	46582540	rs1045278	T	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	46589988	rs11608815	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,56:0.44:128
chr12	46591906	rs7954255	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr12	46596714	rs117554795	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr12	46601056	rs2289768	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:62,24:0.28:86
chr12	46633328	rs7959095	G	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.915;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.525;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.632;QD=10.93;ReadPosRankSum=0.383;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	46662485	rs2242355	G	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	46755112	rs7961994	A	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	46758494	rs2307061	A	G	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	46759017	rs7968173	T	A	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	46759057	rs12307969	G	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr12	46761127	rs10880959	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	47159123	rs4768756	A	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	47159196	rs2430921	A	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-0.387;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:47,28:0.37:75
chr12	47162211	rs2465583	C	T	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=0.456;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:65,32:0.33:97
chr12	47162889	rs2465582	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr12	47162938	rs2216433	T	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr12	47163306	rs180403	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.178;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=11.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-1.599;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	47168898	rs180414	G	A	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	47170621	rs12316767	C	A	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr12	47170887	rs180419	C	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.259;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.346;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr12	47170910	rs2430922	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr12	47172581	.	GA	G	209.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr12	47173662	rs180426	A	G	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-1.483;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:165,82:0.33:247
chr12	47173830	rs2287471	G	A	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr12	47178307	rs180430	A	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:62,35:0.36:97
chr12	47471439	rs2269828	G	A	4555.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:116,189:0.62:305
chr12	47581629	rs832733	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	47758032	rs215383	A	G	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	47761212	rs58616	G	A	3993.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:107,179:0.63:286
chr12	47761313	rs11419253	A	AT	1591.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr12	48081539	rs7136422	C	T	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr12	48081637	rs7136561	C	T	4917.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:129,224:0.63:353
chr12	48104746	rs1235152	G	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	48106488	rs1234820	G	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr12	48110325	rs1235153	A	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	48110608	rs2524318	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.69;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	48110608	.	ACATCG	GCATCA,GCATCG	332	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.08;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=8,24;NR=1,3;PP=139,332;QD=21.3853194291;SC=AAAAGTCGAGACATCGAAAGA;SbPval=0.73;Source=Platypus;TC=29;TCF=25;TCR=4;TR=9,27;WE=48110621;WS=48110598;set=Platypus	GT:AF:DP	0/1:0.31:29
chr12	48110613	rs2524317	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.351;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=1.457;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr12	48131728	rs2072117	G	A	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:52,110:0.68:162
chr12	48132451	rs2072116	T	C	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	48132889	rs2074535	G	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.042;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr12	48134214	rs10875687	G	C	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:70,141:0.67:211
chr12	48134360	rs10875688	G	T	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:67,115:0.63:182
chr12	48134381	rs35703007	CG	C	3106.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:65,117:0.64:182
chr12	48134695	rs2074533	T	C	4537.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:114,205:0.64:319
chr12	48140827	rs73304406	A	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr12	48141157	rs74088038	G	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.368;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.837;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	48142418	rs757281	C	G	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	48143095	rs149061709	G	GCTCTGGT	8640.73	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:119,201:0.63:320
chr12	48143360	rs757280	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	48144243	rs757279	A	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	48144925	rs2016123	T	C	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	48145104	rs1018939	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr12	48145153	rs757287	G	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:98,64:0.40:162
chr12	48145171	rs757286	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:119,69:0.37:188
chr12	48145368	rs2072115	A	G	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:79,179:0.69:258
chr12	48151822	rs11168230	C	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.150;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:77,37:0.32:114
chr12	48164758	rs2544025	G	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr12	48174275	rs59205218	C	T	2866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.542;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-0.062;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:51,128:0.72:179
chr12	48174641	rs7964310	T	C	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr12	48177906	rs7306788	C	T	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:64,167:0.72:231
chr12	48178127	rs3192737	A	G	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:48,84:0.64:132
chr12	48178465	rs3815138	T	C	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:111,160:0.59:271
chr12	48178513	rs7972177	A	G	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:100,154:0.61:254
chr12	48179347	rs1006476	C	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr12	48179478	rs1006477	T	G	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:42,62:0.60:104
chr12	48181778	rs6580637	T	C	5614.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:138,247:0.64:385
chr12	48185167	rs11832133	G	C	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:108,187:0.63:295
chr12	48185192	rs56047798	G	T	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:71,123:0.63:194
chr12	48238837	rs7975232	C	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr12	48251533	rs11168266	C	T	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=2.060;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:29,59:0.67:88
chr12	48251542	rs11168267	G	A	2137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.935;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.89;ReadPosRankSum=0.733;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:22,52:0.70:74
chr12	48259126	rs12717991	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr12	48272895	rs2228570	A	G	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	48358279	rs11609253	C	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr12	48360620	rs2286024	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr12	48360947	.	T	TA	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.526;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:217,64:0.23:281
chr12	48367829	rs1635560	G	A	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:81,141:0.64:222
chr12	48373718	rs11443755	A	AC	744.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr12	48374513	rs1635554	A	G	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,71:0.69:103
chr12	48374826	rs2276458	T	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	48375475	rs1793937	C	G	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr12	48375568	rs1635553	A	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:47,81:0.63:128
chr12	48375965	rs2276457	C	T	5154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.02;ReadPosRankSum=0.772;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:71,135:0.66:206
chr12	48375975	rs2276456	A	G	4775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.53;ReadPosRankSum=-0.269;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:59,121:0.67:180
chr12	48376137	rs2276455	G	A	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr12	48376291	rs2276454	G	A	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=-0.455;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:66,103:0.61:169
chr12	48376443	rs3842680	A	AC	1873.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr12	48376447	rs3829737	A	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:25,55:0.69:80
chr12	48376503	rs3829736	C	T	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:75,155:0.67:230
chr12	48376530	rs11168337	C	A	5122.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:101,226:0.69:327
chr12	48377635	rs10219510	A	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chr12	48377718	rs56010633	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr12	48377756	rs55744743	T	C	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr12	48377947	rs41263845	G	T	2269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=4.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.10;ReadPosRankSum=-1.537;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:36,105:0.74:141
chr12	48377970	rs1635550	A	G	2417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-1.064;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:34,110:0.76:144
chr12	48378380	rs41317939	A	G	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:60,75:0.56:135
chr12	48379961	rs1635547	A	C	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.67;ReadPosRankSum=-0.118;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:30,44:0.59:74
chr12	48379964	rs1635546	A	G	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.63;ReadPosRankSum=-0.774;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr12	48380031	rs1635544	A	G	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:63,119:0.65:182
chr12	48383235	rs1635537	A	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr12	48386553	rs1635534	A	G	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr12	48386577	rs1793915	G	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:52,69:0.57:121
chr12	48387052	rs1793912	A	C	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=8.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=1.086;SOR=2.412;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	48387057	rs1793911	G	C	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=8.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=1.713;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr12	48389245	rs12423250	C	T	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr12	48389643	rs1034762	A	C	4124.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:105,184:0.64:289
chr12	48392433	rs1793958	A	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr12	48398002	rs3803184	G	C	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=0.433;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:31,81:0.72:112
chr12	48398080	rs3803183	T	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr12	48413789	rs113940474	A	ATATTGT	11590.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	48413875	rs17122567	G	A	6387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.396;QD=13.42;ReadPosRankSum=-0.205;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:171,305:0.64:476
chr12	48413944	rs7299135	C	T	10460.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	48413950	rs28459711	A	C	10092.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=1.415;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	48413979	rs7299364	G	T	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	48414009	.	C	CTTT	942.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.99;ReadPosRankSum=0.095;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:6,35:0.85:41
chr12	48414058	rs7299271	C	T	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	48441692	rs1018973	C	G	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.011;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:239,97:0.29:336
chr12	48457385	rs3742074	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	48459488	rs17122612	C	G	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:118,59:0.33:177
chr12	48460563	rs77759793	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr12	48465425	rs72644844	A	C	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-1.221;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr12	48468652	rs4258439	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	48477577	rs11613879	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr12	48499131	rs2408955	G	T	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	48501161	rs11609399	A	T	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.976;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:102,34:0.25:136
chr12	48501411	rs10492080	A	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	48512285	rs4760682	C	A	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	48527186	rs1049392	C	T	3645.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:121,164:0.58:285
chr12	48534814	rs34700912	A	AG	657.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr12	48537624	rs4075913	A	G	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:123,177:0.59:300
chr12	48545553	rs10783230	G	T	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,77:0.67:115
chr12	48578325	rs10783231	A	C	2566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=14.75;ReadPosRankSum=0.786;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:62,112:0.64:174
chr12	48578442	rs73304926	C	T	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:73,165:0.69:238
chr12	48596875	rs144247841	C	CA	3603.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:67,113:0.63:180
chr12	48723784	rs2291483	C	T	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=-0.379;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:27,49:0.64:76
chr12	48738555	rs34591795	GA	G	336.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr12	48741219	rs901962	A	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr12	48741663	rs118052620	C	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.586;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.967;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr12	48880078	.	CA	C	293.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	48880381	rs2731091	A	G	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	48880550	rs2731092	T	C	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	48883012	rs2705127	T	C	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.01;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	48883020	rs2731096	G	T	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=2.437;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	48884535	rs2731102	G	C	9030.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr12	48884756	rs2731103	C	A	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	48888763	rs2705132	A	G	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	48919556	rs2731073	A	G	9008.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr12	48919793	rs2705143	T	C	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	48961825	rs118046774	G	A	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:32,88:0.73:120
chr12	48963021	rs2232565	T	C	4347.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:89,191:0.68:280
chr12	49048738	rs3741628	G	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:174,87:0.33:261
chr12	49048985	rs6580690	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr12	49050393	rs149545016	TA	T	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=3.026;QD=2.69;ReadPosRankSum=-0.560;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:70,45:0.39:115
chr12	49054491	rs3741629	G	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.07;ReadPosRankSum=-1.043;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr12	49061511	rs17238800	T	C	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:147,96:0.40:243
chr12	49073043	.	CA	C	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=6.449;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.444;QD=6.19;ReadPosRankSum=-0.986;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr12	49073358	rs3741630	A	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr12	49075811	rs2277365	T	G	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:170,100:0.37:270
chr12	49076036	rs10783277	T	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	49086963	rs3741632	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr12	49091972	.	G	GAA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.770;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr12	49093729	rs7308699	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr12	49095046	.	T	TCAC	183	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=1;HapScore=2;MGOF=32;MMLQ=28;MQ=55.73;NF=0;NR=7;PP=183;QD=32.2857142857;SC=TCTCCCTCTGTCACCCAGGCT;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=7;WE=49095054;WS=49095036;set=Platypus	GT:AD:AF:DP	1/0:4,7:0.64:11
chr12	49108488	rs7138930	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	49110248	rs1110432	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr12	49177113	rs2453486	T	G	5041.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:89,217:0.71:306
chr12	49218171	rs2070615	A	G	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:85,134:0.61:219
chr12	49218810	rs11379348	G	GT	1690.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:38,63:0.62:101
chr12	49219569	rs2453469	A	G	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:45,116:0.72:161
chr12	49221622	rs1045340	G	A	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:380,181:0.32:561
chr12	49230035	rs1057908	T	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr12	49255798	rs1565933	G	C	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	49259194	rs2453489	T	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	49297720	rs4018506	A	AAAAT	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	49298059	rs3809147	G	A	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	49308284	rs10747556	A	G	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr12	49310724	rs10875891	GA	AG	7309.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	49312432	rs10783294	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	49312593	rs10875893	A	G	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	49314862	rs10875894	C	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.79;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	49314994	rs4760600	A	G	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	49315300	rs138566110	A	AT,ATT	836.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.000;QD=18.19;ReadPosRankSum=0.558;SOR=1.426;set=HC	GT:AD:AF:DP	1/2:6,17,23:0.37,0.50:46
chr12	49318546	rs2293449	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	49318800	rs12424638	G	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr12	49319036	rs12829682	A	C	16824.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.14;ReadPosRankSum=0.135;SOR=0.282;set=HC	GT:AD:AF:DP	1/1:1,619:1.00:620
chr12	49319270	rs2272312	C	T	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	49325142	rs11168794	G	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	49332092	rs1054376	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	49332366	rs4760666	C	T	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	49333896	rs5798094	G	GA	6184.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr12	49334044	rs708242	G	C	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	49334762	rs12122	G	C	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	49334982	rs10747557	G	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	49359989	rs1051886	G	A	11622.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr12	49362779	rs833834	T	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	49397291	.	G	GC	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=7.509;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.670;QD=3.20;ReadPosRankSum=0.663;SOR=2.613;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr12	49424616	rs11614738	G	A	3103.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:81,126:0.61:207
chr12	49425978	rs3741622	T	C	4283.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:134,202:0.60:336
chr12	49427652	rs3782357	C	T	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:105,217:0.67:322
chr12	49434074	rs10747559	C	A	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr12	49436724	rs12580349	A	G	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:55,92:0.63:147
chr12	49439659	rs833818	C	T	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	49442356	rs5798089	C	CA	3515.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:54,140:0.72:194
chr12	49442813	rs2304275	T	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,50:0.79:63
chr12	49444545	rs2241726	G	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:53,93:0.64:146
chr12	49460882	rs10715716	CT	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.035;QD=5.72;ReadPosRankSum=-1.944;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr12	49463352	rs71080168	CT	C	9180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.57;ReadPosRankSum=2.739;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:112,221:0.66:333
chr12	49463353	.	TC	CT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=22;MQ=60.0;NF=114;NR=52;PP=2944;QD=20;SC=CACCACCAACTCTTCCAATCC;SbPval=0.56;Source=Platypus;TC=283;TCF=192;TCR=91;TR=166;WE=49463381;WS=49463343;set=Platypus	GT:AD:AF:DP	1/0:117,166:0.59:283
chr12	49463356	.	TCCAATCCTCCACTCTTCC	TTCCTCCACTCTTCC,T	9348.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=349;set=Intersection	GT:AF:DP	0/1:0.66:349
chr12	49463361	rs200055056	TCCTCCACTCTTCC	T	9252.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.659;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=3.600;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.378;QD=24.41;ReadPosRankSum=1.287;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:146,233:0.61:379
chr12	49491688	rs200520975	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:81,30:0.27:111
chr12	49667103	rs9668136	A	T	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	49689597	rs7488343	G	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	49690337	rs2070760	T	C	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:60,118:0.66:178
chr12	49691250	rs73112143	A	G	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:61,105:0.63:166
chr12	49691567	rs2236746	T	C	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:65,116:0.64:181
chr12	49719149	.	T	TAA	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.092;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr12	49721122	rs73309977	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr12	49723581	rs11835303	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr12	49723963	rs4243545	A	G	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:48,74:0.61:122
chr12	49724955	rs3088008	A	C	7377.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:206,323:0.61:529
chr12	49726717	rs56911877	C	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=0.039;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	49730056	rs142480495	G	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr12	49730135	rs146137821	G	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr12	49856194	rs57841760	C	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr12	49883371	rs2272478	A	G	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	49884269	rs74089525	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr12	49893815	rs11447993	C	CT,CTT	1362.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.746;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=0.182;SOR=0.313;set=HC	GT:AD:AF:DP	1/2:13,60,18:0.66,0.20:91
chr12	49916373	rs74089551	A	C	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr12	49916459	rs12309053	A	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	49934565	rs7132792	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:18,45:0.71:63
chr12	49937654	rs11337899	GC	G	3043.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:57,115:0.67:172
chr12	49937813	rs1150057	A	G	10107.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=0.804;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:2,378:0.99:380
chr12	49937912	rs1150058	G	A	4487.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:86,190:0.69:276
chr12	49943840	rs2278070	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr12	49948105	rs3815832	A	G	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,70:0.65:108
chr12	49950408	rs56743994	G	A	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:76,106:0.58:182
chr12	49951232	rs2241418	T	C	5379.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:105,222:0.68:327
chr12	49951377	rs59261129	C	T	7093.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:145,312:0.68:457
chr12	49952394	rs13906	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr12	49952668	rs2303305	G	A	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:125,204:0.62:329
chr12	49956941	rs17198118	T	G	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:149,84:0.36:233
chr12	49956971	rs61331732	CCT	C	6033.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:89,158:0.64:247
chr12	49957103	rs57965817	A	G	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	49959154	rs79170966	G	A	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.323;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=7.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-1.416;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:82,28:0.25:110
chr12	49960551	rs13066	C	A	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:91,146:0.62:237
chr12	49993172	rs80350134	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr12	49993678	rs52824916	C	T	3996.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:95,178:0.65:273
chr12	50026779	rs376648517	GC	G	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.139;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr12	50038292	rs4073998	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	50039479	rs77151210	G	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.745;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-2.190;SOR=1.921;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr12	50040380	rs76862171	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr12	50040811	rs3841320	A	AG	7998.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	50040968	rs143718193	T	TC	2038.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,68:0.63:108
chr12	50043884	rs61512987	C	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	50047182	rs4641552	C	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr12	50050151	rs139157446	AAC	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.678;QD=0.70;ReadPosRankSum=-2.366;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:41,6:0.13:47
chr12	50146173	rs11401668	C	CT	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-2.818;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:35,40:0.53:75
chr12	50146950	rs1012874	T	C	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr12	50149347	rs17123927	A	G	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:30,70:0.70:100
chr12	50149544	rs74087188	T	C	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:80,115:0.59:195
chr12	50149604	rs77056500	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr12	50152193	rs4563	G	A	7241.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:172,319:0.65:491
chr12	50152601	.	C	CT	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.608;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:44,44:0.50:88
chr12	50155400	rs6580721	A	G	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	50155434	rs17123943	T	C	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=7.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=1.524;SOR=1.687;set=HC	GT:AD:AF:DP	0/1:99,36:0.27:135
chr12	50156640	rs10506287	T	C	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:83,136:0.62:219
chr12	50174299	rs61402274	A	C	4293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.927;QD=13.33;ReadPosRankSum=-2.060;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:130,192:0.60:322
chr12	50174307	rs111500583	CA	C	1367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.370;QD=4.05;ReadPosRankSum=1.427;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:196,142:0.42:338
chr12	50187579	rs191603809	C	A	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:79,115:0.59:194
chr12	50188391	rs12314502	C	A	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	50188395	rs60633549	CA	C	3630.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	50188434	rs2603105	T	A	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	50189807	rs2720298	C	A	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	50189834	rs2603104	T	G	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	50192009	rs1075366	T	C	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	50197880	rs7953534	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	50271372	rs1248263	G	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	50283103	rs185815389	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr12	50283465	rs643971	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	50290728	rs297935	A	G	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr12	50297670	rs706795	T	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	50304588	rs487165	A	T	7712.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr12	50304949	rs450798	G	A	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	50305007	rs394119	C	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	50344976	rs3741559	G	A	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:43,97:0.69:140
chr12	50348078	rs426496	T	C	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:199,121:0.38:320
chr12	50348674	rs402813	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr12	50349090	rs410837	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	50349123	rs371777	C	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr12	50349143	rs403201	C	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr12	50349411	rs457487	C	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr12	50349765	rs467323	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	50356174	rs139560378	TGGG	T,TGG	1411.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.108;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.37;ReadPosRankSum=0.770;SOR=0.365;set=HC	GT:AD:AF:DP	1/2:1,23,21:0.51,0.47:45
chr12	50358054	rs3736309	A	G	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:106,134:0.56:240
chr12	50358073	rs296753	C	G	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	50368013	rs296748	C	T	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	50386015	rs296737	C	T	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	50393372	rs378943	G	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	50394792	rs147698408	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr12	50395166	.	TTC	T	70	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=24;MQ=60.42;NF=0;NR=4;PP=70;QD=19.75;SC=AAACAATGTGTTCTCTCTCTC;SbPval=1.0;Source=Platypus;TC=24;TCF=0;TCR=24;TR=4;WE=50395175;WS=50395156;set=Platypus	GT:AD:AF:DP	0/1:20,4:0.17:24
chr12	50399254	rs2307084	C	T	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:64,93:0.59:157
chr12	50452708	rs653576	C	G	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr12	50467644	rs706792	G	T	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:74,152:0.67:226
chr12	50467769	rs706793	G	A	7534.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:190,332:0.64:522
chr12	50471630	rs2272391	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr12	50473660	rs404751	A	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	50482211	rs646782	T	C	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,64:0.57:112
chr12	50498139	rs836178	T	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr12	50503082	rs836179	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr12	50503269	rs836180	C	T	2461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=2.143;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:55,113:0.67:168
chr12	50517454	rs113279297	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.146;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	50529314	rs11169281	C	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:114,72:0.39:186
chr12	50529736	rs3741562	G	A	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:207,125:0.38:332
chr12	50529936	rs7136570	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr12	50537815	rs7302981	A	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:118,71:0.38:189
chr12	50579398	rs12817211	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr12	50599709	rs2302900	T	C	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=2.092;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:61,37:0.38:98
chr12	50599984	rs1362984	T	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr12	50616346	rs3812825	A	G	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:141,65:0.32:206
chr12	50727706	rs6580741	G	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:146,63:0.30:209
chr12	50727811	rs6580742	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:238,102:0.30:340
chr12	50744094	rs7296277	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	50744119	rs7296291	G	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:42,81:0.66:123
chr12	50744171	rs7312252	T	C	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:69,130:0.65:199
chr12	50744753	rs10506292	T	C	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:96,143:0.60:239
chr12	50746348	rs7304951	A	G	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.62;QD=26.59;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	50746917	rs10876023	A	G	4407.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:97,194:0.67:291
chr12	50747005	rs10876024	T	C	3078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.663;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.245;QD=16.92;ReadPosRankSum=-1.118;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:49,133:0.73:182
chr12	50749221	rs4435082	G	C	8810.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	50749227	rs4625558	T	G	8746.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	50749294	rs4421818	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:106,66:0.38:172
chr12	50750040	rs7964439	C	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	50754563	rs12303082	T	G	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:38,90:0.70:128
chr12	50821776	.	C	CTTT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=1.029;QD=4.44;ReadPosRankSum=-0.083;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr12	50829263	rs113327207	T	TTATTC	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	50856259	rs5798139	C	CA	1106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=0.329;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:26,70:0.73:96
chr12	50898784	.	T	TGGCGGCGGCGGCGGCGGCGGCGGC	1616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.46;ReadPosRankSum=2.960;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr12	51019633	rs34609458	TC	T	1080.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	51034721	rs2731436	C	T	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	51076844	rs2731447	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	51086931	rs2090852	T	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr12	51088979	rs34553264	T	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.865;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.664;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr12	51089287	rs2139930	G	T	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-0.552;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:88,43:0.33:131
chr12	51089572	rs2684890	G	A	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	51089616	rs2684891	T	C	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr12	51089734	rs11169524	T	A	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:301,131:0.30:432
chr12	51117229	rs7310279	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	51121629	rs3832875	CA	C	1268.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:148,77:0.34:225
chr12	51128832	rs3742062	A	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:69,45:0.39:114
chr12	51135167	rs1975351	A	G	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	51135275	rs1866422	T	C	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	51138687	rs2280503	A	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:49,16:0.25:65
chr12	51182122	rs10747592	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr12	51203178	rs62928564	ATT	A	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.717;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=1.818;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	51203181	rs63460960	ATT	A	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.048;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=1.865;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	51203226	rs4986837	GT	G	892.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	51203371	rs1129406	C	T	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.205;QD=6.41;ReadPosRankSum=0.912;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:124,33:0.21:157
chr12	51203376	rs4986838	T	C	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.489;QD=6.53;ReadPosRankSum=0.284;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:121,34:0.22:155
chr12	51207704	rs829112	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	51236931	rs829121	G	A	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	51237816	rs861204	G	A	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr12	51319346	rs2359005	A	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr12	51382232	rs161044	T	C	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	51386066	rs1048230	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr12	51386513	.	C	CA	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-0.720;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr12	51386527	.	AAAG	A	163.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.914;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr12	51386530	rs2018673	G	A	471.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.208;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr12	51386839	rs224569	C	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	51386868	rs224570	T	C	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	51386868	.	TGGAC	CGGAC,CGGAT	129	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.05;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=32;MMLQ=17;MQ=60.0;NF=7,3;NR=11,6;PP=129,81;QD=9.09840069707;SC=GGCTCAAGTCTGGACCTCATT;SbPval=0.58;Source=Platypus;TC=18;TCF=7;TCR=11;TR=18,9;WE=51386880;WS=51386858;set=Platypus	GT:AF:DP	0/1:1.00:18
chr12	51386872	rs1632791	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.22;ReadPosRankSum=-0.202;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	51398441	rs12831269	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.017;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr12	51398511	rs41439649	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,37:0.36:104
chr12	51399050	rs224589	T	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr12	51399997	rs224590	A	G	141.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	51400084	rs140582579	AAAAC	A	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	51402905	rs445520	T	G	5927.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.980;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=22.221;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.63;ReadPosRankSum=-1.034;SOR=1.964;set=HC	GT:AD:AF:DP	1/1:4,258:0.98:262
chr12	51403088	rs11169667	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:64,36:0.36:100
chr12	51404467	rs427020	C	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr12	51404679	rs370462	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr12	51442944	rs12379	G	A	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-1.234;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:185,124:0.40:309
chr12	51447506	rs7971308	A	G	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:139,67:0.33:206
chr12	51453366	rs3190077	A	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	51461425	rs4768956	C	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	51461793	rs2029146	G	A	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr12	51467596	rs11169696	A	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr12	51492406	.	C	CA	182.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.873;QD=5.69;ReadPosRankSum=0.571;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr12	51502791	rs7134695	C	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr12	51504799	rs7978782	T	C	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	51504894	rs11308041	GT	G	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.925;QD=6.62;ReadPosRankSum=-1.407;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	51510234	rs12826153	C	A	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:141,74:0.34:215
chr12	51511244	rs10876138	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr12	51511264	rs12810700	T	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	51512637	rs3839987	CT	C	1363.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr12	51585335	rs10783419	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	51585599	rs10735831	T	G	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.165;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:46,42:0.48:88
chr12	51585599	.	TGC	GGT	1332	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=16;NR=22;PP=1332;QD=36.4596809174;SC=GAACCATCCCTGCTTATCTGG;SbPval=0.46;Source=Platypus;TC=85;TCF=34;TCR=51;TR=38;WE=51585609;WS=51585589;set=Platypus	GT:AD:AF:DP	1/0:47,38:0.45:85
chr12	51585601	rs10747606	C	T	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.18;ReadPosRankSum=-0.287;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr12	51636259	rs1049467	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr12	51663215	rs2114876	T	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.18;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	51681846	rs4611251	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	51681903	rs7954976	T	C	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	51685831	rs3210837	T	C	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	51686204	rs7306505	T	C	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	51686285	rs7135343	A	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	51691149	rs3782469	A	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	51707801	rs143416791	CTTATTTAT	C,CTTATTTATTTAT	615.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=63;set=Intersection	GT:AF:DP	1/2:0.38,0.50:24
chr12	51722311	rs7138439	C	T	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	51735022	rs934089	A	T	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	51740388	rs907354	C	A	7044.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr12	51748326	rs2288369	G	A	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=1.270;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:45,72:0.62:117
chr12	51748395	rs7971653	G	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	51752085	.	G	GT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.418;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr12	51752897	rs907347	G	A	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=1.957;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:58,76:0.57:134
chr12	51754629	rs2241545	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:108,57:0.35:165
chr12	51796904	rs907350	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	51863643	rs4491281	T	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	51879826	rs10783445	G	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	52080965	rs4761829	C	T	12465.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr12	52099153	rs2291265	C	T	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr12	52100566	rs10783474	G	A	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	52156255	rs303767	A	C	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.084;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr12	52159438	rs56879517	G	GT	1899.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.451;QD=19.58;ReadPosRankSum=0.976;SOR=0.680;set=HC	GT:AD:AF:DP	1/1:5,92:0.95:97
chr12	52163789	rs303808	G	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	52173781	rs76315468	G	GTTC	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	52182452	rs9943714	C	T	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:153,59:0.28:212
chr12	52182545	rs9943809	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:120,58:0.33:178
chr12	52184271	rs303815	T	C	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=3.469;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:30,72:0.71:102
chr12	52184342	rs2241855	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.802;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr12	52200028	rs303828	C	A	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	52200742	rs60637	C	A	6460.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:166,275:0.62:441
chr12	52204246	rs172559	T	C	8481.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr12	52215102	rs303819	T	G	10477.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr12	52284233	rs706832	T	C	14216.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr12	52307145	rs2071218	C	T	12065.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr12	52307308	rs2071219	A	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	52345497	rs10540557	TGCG	T	2345.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	52369300	rs2242106	C	T	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:178,80:0.31:258
chr12	52369956	rs3214829	G	GA	233.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	52381026	rs2252518	C	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:53,31:0.37:84
chr12	52403110	rs10876227	G	A	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:24,65:0.73:89
chr12	52404618	rs1298913	T	G	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr12	52448618	.	G	T	5785.77	.	AC=1;AF=0.500;AN=2;DP=454;set=Intersection	GT:AD:AF:DP	0/1:191,261:0.58:452
chr12	52565322	rs3741737	G	T	7662.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	52566047	rs3741736	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:128,69:0.35:197
chr12	52566650	rs73103470	A	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	52574780	rs4762060	A	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	52627007	rs7308751	C	T	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:133,107:0.45:240
chr12	52627215	rs7308888	A	G	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:187,92:0.33:279
chr12	52631242	rs12313552	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.032;SOR=1.372;set=HC	GT:AD:AF:DP	0/1:74,16:0.18:90
chr12	52631313	rs6580870	A	G	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.848;QD=2.81;ReadPosRankSum=-0.841;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:162,48:0.23:210
chr12	52631394	rs10637094	C	CAT	1879.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=2.698;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.691;QD=8.62;ReadPosRankSum=-0.859;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:161,57:0.26:218
chr12	52631510	rs56203755	A	ATGTGTG,ATG	382.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=60;set=Intersection	GT:AF:DP	0/1:0.45:31
chr12	52632573	rs7300317	A	G	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:229,102:0.31:331
chr12	52635360	rs999665	G	A	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-0.609;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:237,104:0.30:341
chr12	52635443	rs2243588	T	C	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.971;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.835;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:192,67:0.26:259
chr12	52635560	rs999666	A	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	52639302	rs2608009	G	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:121,46:0.28:167
chr12	52645754	rs1894035	T	C	6839.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:152,295:0.66:447
chr12	52648297	rs9325150	T	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr12	52649887	rs2168762	T	C	4297.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:107,193:0.64:300
chr12	52649954	rs2242139	T	C	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:44,92:0.68:136
chr12	52660812	rs2852474	G	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:245,116:0.32:361
chr12	52660904	rs2857686	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:94,48:0.34:142
chr12	52661075	rs748040	C	T	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:77,118:0.61:195
chr12	52661192	rs1870222	A	G	10114.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	52661192	.	AACCG	GACCA,GACCG	1839	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=7;MMLQ=21;MQ=60.0;NF=34,103;NR=33,96;PP=809,1839;QD=12.8726548487;SC=CCTTAGCGATAACCGCTGCAA;SbPval=0.51;Source=Platypus;TC=200;TCF=103;TCR=97;TR=67,199;WE=52661217;WS=52661182;set=Platypus	GT:AF:DP	0/1:0.34:200
chr12	52661196	rs2077346	G	A	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-0.250;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:151,84:0.36:235
chr12	52661209	rs1870223	T	C	9627.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	52661302	rs1870224	C	A	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr12	52679937	rs3660	C	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr12	52680008	rs3657	T	C	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:81,48:0.37:129
chr12	52681056	rs4761856	C	T	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr12	52681080	rs4761784	G	A	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr12	52681416	rs7300801	T	C	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:177,74:0.29:251
chr12	52681437	rs3187034	A	G	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:193,81:0.30:274
chr12	52681460	rs4761786	G	A	4614.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:101,208:0.67:309
chr12	52681533	rs7300941	T	C	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:197,125:0.39:322
chr12	52681714	rs6580872	T	C	7545.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	52681733	rs7954186	A	C	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:210,112:0.35:322
chr12	52681925	rs6580873	A	C	5394.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr12	52681968	rs6580874	T	C	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.77;QD=34.25;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	52682141	rs12812669	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.839;QD=4.01;ReadPosRankSum=1.302;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr12	52685096	rs2071588	C	G	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.501;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.428;MLEAC=1;MLEAF=0.500;MQ=48.76;MQRankSum=-1.082;QD=15.46;ReadPosRankSum=-0.099;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr12	52695616	rs141027796	T	C	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:97,64:0.40:161
chr12	52755097	rs1791627	A	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr12	52755189	rs2298797	A	G	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:125,60:0.32:185
chr12	52760732	rs2298794	G	A	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-1.134;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:56,40:0.42:96
chr12	52773702	rs1791611	G	A	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:122,64:0.34:186
chr12	52773774	rs1791661	T	C	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.384;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:73,34:0.32:107
chr12	52774158	rs951772	G	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr12	52774235	rs951773	A	G	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr12	52774305	rs1732293	A	G	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:189,112:0.37:301
chr12	52774370	rs1791657	G	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:112,76:0.40:188
chr12	52774993	rs883712	C	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:121,50:0.29:171
chr12	52775034	rs1791652	G	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=0.081;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:94,34:0.27:128
chr12	52775062	rs883709	T	C	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:83,45:0.35:128
chr12	52775395	rs883710	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:105,51:0.33:156
chr12	52776679	rs1732297	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	52776895	rs1732298	G	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.899;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:75,25:0.25:100
chr12	52776942	rs1732299	T	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.244;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr12	52777022	rs17658453	G	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	52777036	rs1732300	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	52777439	rs1614888	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.119;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr12	52777502	rs1945297	A	G	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.297;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:89,29:0.25:118
chr12	52777513	rs2245203	T	C	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=-0.303;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:94,32:0.25:126
chr12	52777578	rs1613931	C	T	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=0.862;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:83,27:0.25:110
chr12	52777580	rs1613929	A	C	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=1.476;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:83,25:0.23:108
chr12	52777606	rs1613859	G	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.823;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:69,22:0.24:91
chr12	52778772	rs1732303	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	52778947	rs1791631	A	G	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:193,117:0.38:310
chr12	52779244	rs1732304	A	G	3695.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:326,191:0.37:517
chr12	52779391	rs1732305	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr12	52788928	rs2658658	G	A	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:82,174:0.68:256
chr12	52789509	rs1732264	T	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	52789597	rs1732265	A	G	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	52789605	rs1732266	T	A	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	52789691	rs34479712	A	C	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr12	52789693	rs11304728	GT	G	2139.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr12	52790899	rs1791635	T	C	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	52790940	rs2249384	C	T	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:60,90:0.60:150
chr12	52818504	rs298104	T	G	10708.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr12	52822258	rs401926	A	G	13555.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr12	52824352	rs395623	G	A	5578.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	52824562	rs443084	T	A	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	52825363	rs1798640	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	52827534	rs67876	C	T	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	52827818	rs298109	T	C	13001.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr12	52841765	rs388626	G	A	11928.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr12	52842736	rs437014	T	C	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	52844016	rs4024141	T	C	5199.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	52844243	rs28414881	A	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.974;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=41.369;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-13.336;QD=0.71;ReadPosRankSum=1.226;SOR=7.423;set=HC	GT:AD:AF:DP	0/1:478,42:0.08:520
chr12	52844246	rs28542657	A	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.469;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=44.558;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-13.922;QD=0.85;ReadPosRankSum=-0.057;SOR=5.416;set=HC	GT:AD:AF:DP	0/1:477,48:0.09:525
chr12	52844265	rs652423	T	C	10240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=22.796;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=12.923;QD=20.52;ReadPosRankSum=2.031;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:67,432:0.87:499
chr12	52844477	rs5798212	G	GC	3306.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:76,96:0.56:172
chr12	52845801	rs428894	T	C	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	52862767	rs2567	G	C	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=3.398;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	52862770	rs1053796	T	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=3.215;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	52862783	rs2568	G	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	52863038	rs410562	G	A	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr12	52863213	rs412533	C	T	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	52863621	rs382367	T	G	11901.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr12	52863709	rs452600	C	T	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	52863732	rs434339	C	T	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	52864240	rs415580	G	T	18098.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr12	52864843	rs604303	G	A	7803.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	52865548	rs28759265	G	C	9440.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr12	52865592	rs644414	A	T	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	52865687	rs391567	C	T	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.56;QD=33.51;SOR=3.958;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	52865918	rs425073	G	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.25;QD=36.16;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	52865925	rs17099602	C	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.78;QD=47.74;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	52881376	rs1053857	C	T	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	52881380	rs1053854	A	C	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	52881428	rs28667515	A	C	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	52882209	rs62617089	G	A	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:348,164:0.32:512
chr12	52882410	rs144849815	T	TGAA	4383.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	52884283	rs298119	A	G	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	52884557	rs298120	T	C	24428.77	.	AC=2;AF=1.00;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	1/1:0,899:1.00:899
chr12	52885019	rs298121	C	T	9810.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr12	52885201	rs298122	C	T	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	52886478	rs376545	T	C	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	52886490	rs711317	A	G	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	52908872	rs11549949	C	T	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:335,170:0.34:505
chr12	52908917	rs11549950	T	C	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:438,227:0.34:665
chr12	52909061	rs28694819	T	A	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:229,115:0.33:344
chr12	52910687	rs1799849	G	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:94,35:0.27:129
chr12	52910712	rs1799848	A	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr12	52910851	rs60815939	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr12	52911401	rs4761924	T	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:65,48:0.42:113
chr12	52912353	rs7315406	C	T	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.025;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:113,61:0.35:174
chr12	52912768	rs1132948	C	T	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:498,242:0.33:740
chr12	52912870	rs17852231	A	G	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:157,78:0.33:235
chr12	52912906	rs641621	G	T	4252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=9.703;MLEAC=1;MLEAF=0.500;MQ=55.55;MQRankSum=-0.971;QD=25.62;ReadPosRankSum=0.477;SOR=1.427;set=HC	GT:AD:AF:DP	0/1:58,108:0.65:166
chr12	52912909	rs641615	G	T	4181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=11.686;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-0.888;QD=25.66;ReadPosRankSum=0.479;SOR=1.570;set=HC	GT:AD:AF:DP	0/1:56,107:0.66:163
chr12	52912959	rs60314569	G	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:82,35:0.30:117
chr12	52913029	rs607860	C	T	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	52913730	rs11549951	G	A	3700.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:401,206:0.34:607
chr12	52938320	rs2292506	C	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:145,83:0.36:228
chr12	52941894	rs3803083	C	T	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:73,155:0.68:228
chr12	52942998	rs635206	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	52944060	rs10747643	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:57,28:0.33:85
chr12	52962144	rs185121430	G	A	3645.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:459,205:0.31:664
chr12	52964718	rs597048	G	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:104,58:0.36:162
chr12	52964934	rs669865	T	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=0.785;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr12	52965173	rs670741	T	G	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:95,44:0.32:139
chr12	52965722	rs673363	T	C	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-0.495;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:117,74:0.39:191
chr12	52965761	rs673449	C	T	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:153,67:0.30:220
chr12	52965782	rs673476	T	C	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:151,63:0.29:214
chr12	52966137	rs685720	T	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr12	52966512	rs687127	C	A	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:127,77:0.38:204
chr12	52967063	.	G	A	712.77	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:67,34:0.34:101
chr12	52986132	rs617820	T	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:84,40:0.32:124
chr12	52986927	rs618502	T	C	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr12	53002956	rs591636	T	C	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr12	53004319	.	T	TC	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.527;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr12	53011955	rs61736102	G	A	4098.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:421,227:0.35:648
chr12	53044267	rs638043	C	T	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr12	53045623	.	A	AGCC	3758.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=15.231;QD=8.50;ReadPosRankSum=-0.182;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:327,115:0.26:442
chr12	53045626	.	T	TGCCGCCTCCAAAGCC	4669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;ClippingRankSum=0.000;DP=461;ExcessHet=3.0103;FS=3.775;MLEAC=1;MLEAF=0.500;MQ=61.74;MQRankSum=15.788;QD=10.20;ReadPosRankSum=0.128;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:337,121:0.26:458
chr12	53069014	rs14024	T	C	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:41,75:0.65:116
chr12	53069640	.	A	T	242.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	53070121	rs698170	T	G	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:117,168:0.59:285
chr12	53070174	rs17678945	C	A	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:183,127:0.41:310
chr12	53071338	rs626480	A	G	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	53084872	rs643027	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr12	53085089	rs636127	T	C	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:45,77:0.63:122
chr12	53085262	rs2684339	C	A	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:57,134:0.70:191
chr12	53088484	rs10783528	C	T	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	53089460	rs5798218	GACCC	G	2634.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	53090068	rs588706	G	A	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	53096913	rs1625862	G	A	14946.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr12	53162638	rs2280479	G	A	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:259,153:0.37:412
chr12	53162749	rs140093642	G	A	4435.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:377,236:0.38:613
chr12	53162773	rs1464423	A	G	15611.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:24,524:0.96:548
chr12	53164848	rs7313832	G	A	4525.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:112,201:0.64:313
chr12	53165940	rs6580904	C	T	6704.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:167,295:0.64:462
chr12	53166192	rs6580905	G	A	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,58:0.72:80
chr12	53166603	rs61730600	T	C	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=1.124;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:105,49:0.32:154
chr12	53167313	rs7399317	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	53183811	rs80023802	G	A	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:44,69:0.61:113
chr12	53184683	rs17119107	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:190,75:0.28:265
chr12	53186088	rs3887954	G	C	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:80,124:0.61:204
chr12	53186122	rs4432093	G	A	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:91,118:0.56:209
chr12	53186718	rs117079374	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.821;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=5.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.277;SOR=1.730;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr12	53187150	rs4919750	C	T	3349.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:79,149:0.65:228
chr12	53202380	rs2307028	T	C	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	53203019	rs75270653	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:26,70:0.73:96
chr12	53204614	rs2307027	C	T	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	53204757	rs10783539	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	53207583	rs11267392	C	CCACCAAAGCCACCAGTGCCGAAACCAGCTCCGAAGCCGCCGG	20740.73	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=61.55;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr12	53216184	rs4415849	A	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	53216989	rs17688627	G	A	10515.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr12	53217056	rs10876353	G	A	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	53217701	rs10876354	C	A	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	53227803	rs2638497	A	G	9373.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr12	53241626	rs11170287	A	G	6608.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	53242440	rs2013335	A	G	9368.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr12	53294381	rs8608	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	53294821	rs4351899	T	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr12	53295917	rs2035875	A	G	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	53298769	rs1065306	A	G	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	53298835	rs2070910	T	G	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	53343257	.	C	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=23.615;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-10.698;QD=1.69;ReadPosRankSum=1.427;SOR=2.396;set=HC	GT:AD:AF:DP	0/1:115,15:0.12:130
chr12	53343265	.	CC	AT	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=21.358;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-10.686;QD=1.10;ReadPosRankSum=2.101;SOR=2.069;set=HC	GT:AD:AF:DP	0/1:119,13:0.10:132
chr12	53343273	rs11551638	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=18.408;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-10.667;QD=0.82;ReadPosRankSum=1.735;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:121,12:0.09:133
chr12	53343461	rs17120866	A	AC	12093.73	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr12	53344736	.	A	C	415.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	53400440	rs61927957	T	G	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	53416119	rs7975725	T	C	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	53416251	rs10506315	C	T	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	53421746	rs59856997	CT	C	3709.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:6,183:0.97:189
chr12	53432088	rs7968918	T	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	53433089	rs1548204	C	A	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	53433486	rs8916	C	T	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	53433709	rs1356993	C	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	53433788	rs1356994	A	G	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	53442956	rs12369033	G	C	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	53449735	rs2364153	T	C	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	53451952	rs2280446	C	T	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:144,77:0.35:221
chr12	53452263	rs66607805	CCAGGTGGCAGG	C	2202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.861;QD=8.99;ReadPosRankSum=-0.802;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:140,105:0.43:245
chr12	53454208	rs75248314	C	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:87,43:0.33:130
chr12	53473023	.	G	A	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-1.480;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:27,42:0.61:69
chr12	53498784	rs60453304	A	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=2.099;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	53673424	rs77269929	T	TTGG,TTGGACC	2848.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=61;set=Intersection	GT:AF:DP	1/1:1.00:60
chr12	53673425	.	A	C	1318	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=48;NR=8;PP=1318;QD=24.1566287955;SC=AGGTCAAACTACAGTCCAAGG;SbPval=0.74;Source=Platypus;TC=68;TCF=56;TCR=12;TR=56;WE=53673433;WS=53673414;set=Platypus	GT:AD:AF:DP	1/1:12,56:0.82:68
chr12	53673425	rs370889472	A	ACCC	2848.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.95;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	53677072	rs1609473	T	G	6707.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	53677089	rs4454760	G	A	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	53681683	rs1379610	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	53681883	rs1110719	A	T	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	53682457	rs56358776	G	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	53682986	rs3214023	C	T	18277.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,675:1.00:675
chr12	53684619	rs61754164	A	G	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	53686703	rs1056685	G	A	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	53689190	rs1870240	C	G	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	53690188	rs59765323	CT	C	778.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:3,41:0.93:44
chr12	53691962	rs2694861	C	A	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	53692920	rs34165644	C	CA	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.820;QD=7.02;ReadPosRankSum=0.816;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr12	53692955	rs1020745	G	A	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=26.74;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	53693277	rs56249432	TG	T	1040.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	53693532	rs1534284	AA	GC	9943.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	53700848	rs1534282	C	T	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr12	53700860	rs711316	A	G	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr12	53702371	rs4759287	T	C	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	53703021	rs1546808	G	A	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	53708011	rs7953255	G	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	53708910	rs11540353	A	G	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:114,80:0.41:194
chr12	53709499	.	A	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.764;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chr12	53709708	rs7960963	G	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	53714290	rs4759232	T	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	53714496	rs4759231	A	G	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	53714509	rs7298879	T	G	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	53714993	rs4759020	C	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	53722098	rs7138938	A	G	7606.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr12	53722128	rs7139272	G	A	8827.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr12	53823693	.	C	T	1661.77	.	AC=1;AF=0.500;AN=2;DP=237;set=Intersection	GT:AD:AF:DP	0/1:149,87:0.37:236
chr12	53862701	rs11447052	C	CT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=1.142;QD=7.78;ReadPosRankSum=0.433;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	53874892	rs146607300	CAT	C	102.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr12	53877562	rs784565	C	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	53880653	rs7958457	C	T	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:39,100:0.72:139
chr12	53896044	rs148565992	C	T	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:86,52:0.38:138
chr12	54067544	rs2857000	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	54067603	.	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.875;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr12	54109659	rs3741659	C	T	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:122,172:0.59:294
chr12	54109733	rs3741658	A	G	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:73,126:0.63:199
chr12	54109927	rs2277370	C	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr12	54117592	rs10783596	G	A	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr12	54117878	rs61922775	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,31:0.31:101
chr12	54348561	.	GGA	G	424.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.32;ReadPosRankSum=-0.570;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr12	54348564	rs371089228	TGGTG	T	424.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.32;ReadPosRankSum=-1.447;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr12	54349365	rs10876524	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,41:0.85:48
chr12	54350412	rs34427788	C	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr12	54367061	rs4759315	T	G	5380.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	54385599	rs11614913	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.600;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr12	54394497	rs2241820	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.948;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:51,22:0.30:73
chr12	54428011	rs2071449	C	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr12	54448106	rs75256744	A	G	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	54449069	rs71444831	A	AAT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.855;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr12	54496006	rs12308675	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	54496166	rs3195797	G	T	7565.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr12	54496219	rs1133773	A	G	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:64,117:0.65:181
chr12	54520143	.	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.513;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:180,36:0.17:216
chr12	54575458	rs971	T	C	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	54635846	rs2293602	G	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	54651471	rs1140681	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr12	54677980	rs7967622	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr12	54687232	rs10506328	A	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.044;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr12	54764618	rs2706248	T	C	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	54764962	rs2244933	G	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:29,63:0.68:92
chr12	54765005	rs3830651	TCTAA	T	1424.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr12	54767613	rs2706258	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr12	54767812	rs2887875	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:119,54:0.31:173
chr12	54767981	rs3832831	C	CAG	863.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr12	54772755	rs2706256	C	A	709.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.632;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.66;ReadPosRankSum=-0.767;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr12	54799450	rs1249378	A	G	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	54805753	rs1922254	G	T	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	54805765	rs1249181	C	T	6468.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	54910837	rs1691630	G	A	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:82,134:0.62:216
chr12	54911768	rs1795838	C	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:43,62:0.59:105
chr12	54920288	rs368111457	AT	A	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.856;QD=0.87;ReadPosRankSum=-0.178;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr12	54920566	rs12369172	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr12	54920591	rs12367426	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr12	54925750	rs10747697	A	C	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	54925871	rs59947538	CTT	C	1400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.718;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.887;QD=9.80;ReadPosRankSum=0.467;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:77,66:0.46:143
chr12	54932788	rs4758966	T	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	54932842	rs187267715	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:65,25:0.28:90
chr12	54955324	rs10747699	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr12	54955461	rs9668037	A	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr12	54955545	rs3036634	C	CGT	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr12	54955647	rs1552957	G	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	54963491	rs71070829	C	CT	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.393;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr12	54968758	rs35584396	C	CA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.179;QD=3.09;ReadPosRankSum=-0.900;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	54975837	rs1249958	T	C	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	55002014	rs1795819	C	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	55002053	rs1795818	C	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	55002065	rs1716356	G	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	55003931	rs939463	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr12	55004150	rs937308	C	A	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	55028808	rs11832807	C	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.147;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	55039662	rs76825081	A	C	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr12	55041079	rs903768	T	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr12	55042118	rs78394705	A	G	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=0.415;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:53,27:0.34:80
chr12	55248206	rs2306851	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	55248357	rs1048371	G	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:85,44:0.34:129
chr12	55248739	rs10783684	T	C	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr12	55249002	rs7133564	A	G	4867.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:147,225:0.60:372
chr12	55250549	rs10783685	T	G	10863.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr12	55250612	rs1349910	A	G	17306.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:0,657:1.00:657
chr12	55250714	rs10876639	G	A	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:205,105:0.34:310
chr12	55252202	rs1948139	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	55421250	rs2656804	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr12	55421299	rs2243885	C	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr12	55523586	rs58036029	AT	A	1664.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:140,78:0.36:218
chr12	55523685	rs12303066	C	T	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:233,143:0.38:376
chr12	55523860	rs7305779	A	C	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:310,157:0.34:467
chr12	55524172	rs7306491	G	A	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:266,144:0.35:410
chr12	55524314	rs7137261	T	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:117,79:0.40:196
chr12	55614881	.	G	A	2011.77	.	AC=1;AF=0.500;AN=2;DP=437;set=Intersection	GT:AD:AF:DP	0/1:298,134:0.31:432
chr12	55641031	rs7302063	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr12	55641075	rs7301705	A	G	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:105,67:0.39:172
chr12	55641255	rs4522268	C	T	3160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.278;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.452;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:452,182:0.29:634
chr12	55641295	rs4388990	A	G	2901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.192;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-0.330;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:386,157:0.29:543
chr12	55641328	rs6581025	G	A	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.131;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=1.256;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:320,126:0.28:446
chr12	55688267	rs7308594	G	A	4555.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:84,193:0.70:277
chr12	55714876	rs7132347	C	G	4385.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:55,168:0.75:223
chr12	55715119	rs7132916	G	A	7963.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:205,356:0.63:561
chr12	55758832	rs7962135	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	55759878	rs10876751	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	55794264	rs7967395	A	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	55794976	rs7971073	A	G	9889.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr12	55805499	rs61956295	G	A	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.91;MQRankSum=0.240;QD=16.46;ReadPosRankSum=-1.078;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:36,48:0.57:84
chr12	55805617	rs113584176	A	C	7620.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:143,329:0.70:472
chr12	55805647	rs12825123	A	G	2750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=1.471;QD=4.91;ReadPosRankSum=1.343;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:397,163:0.29:560
chr12	55805787	rs7300096	C	A	4996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.771;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.13;MQRankSum=-1.088;QD=17.41;ReadPosRankSum=0.232;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:93,194:0.68:287
chr12	55806134	rs12833263	T	C	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:250,117:0.32:367
chr12	55806238	rs7300594	A	G	6586.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:189,301:0.61:490
chr12	55806437	rs114890660	T	C	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:332,154:0.32:486
chr12	55807293	rs3887805	A	G	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	55807588	rs12826694	C	T	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-8.109;QD=2.10;ReadPosRankSum=1.393;SOR=1.180;set=HC	GT:AD:AF:DP	0/1:459,104:0.18:563
chr12	55808469	rs7132076	C	G	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	55819933	rs10876774	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr12	55820121	rs6581046	C	T	5725.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:132,243:0.65:375
chr12	55820958	rs57387180	CA	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=7.468;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.613;QD=2.59;ReadPosRankSum=0.121;SOR=2.058;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr12	55863381	rs10747756	A	G	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:41,98:0.71:139
chr12	55886294	rs7133698	G	A	3434.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:81,155:0.66:236
chr12	55944926	rs7313959	G	A	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr12	55945119	rs7313899	A	G	27080.77	.	AC=2;AF=1.00;AN=2;DB;DP=981;set=Intersection	GT:AD:AF:DP	1/1:0,974:1.00:974
chr12	56079084	rs3852533	C	G	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.262;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:147,45:0.23:192
chr12	56080148	rs3782239	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:66,43:0.39:109
chr12	56080164	rs7306191	T	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,33:0.36:91
chr12	56082785	rs3782240	C	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr12	56087144	rs56890747	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.449;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr12	56088206	rs7953669	T	C	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:313,126:0.29:439
chr12	56088773	rs2293410	C	T	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=0.718;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:162,92:0.36:254
chr12	56089357	rs1800974	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr12	56089554	rs2293411	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr12	56090038	rs7974721	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr12	56091617	rs2293412	A	G	3560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=1.861;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:591,229:0.28:820
chr12	56093817	rs11171660	T	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr12	56096816	rs2293413	T	C	1992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.367;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:343,132:0.28:475
chr12	56115785	rs3138140	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr12	56131052	rs11171667	T	G	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:125,75:0.38:200
chr12	56182846	rs3741504	G	C	4262.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:100,189:0.65:289
chr12	56211641	rs3759101	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr12	56233518	rs2291267	G	A	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:213,109:0.34:322
chr12	56236043	rs2291268	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr12	56236318	rs7310325	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	56236531	rs7294345	A	G	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	56295544	rs147424544	GAAGT	G	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.328;QD=8.38;ReadPosRankSum=0.335;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr12	56295734	rs7302270	A	G	5736.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	56297625	rs1701698	C	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr12	56298115	rs61956424	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	56298120	rs61956425	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	56326493	rs57799285	GCA	G	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-1.772;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr12	56330572	rs7297871	G	A	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:199,98:0.33:297
chr12	56330906	rs55704764	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:130,72:0.36:202
chr12	56335107	rs1136082	A	G	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:191,106:0.36:297
chr12	56335150	rs2291615	G	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:112,44:0.28:156
chr12	56348028	rs1052206	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,30:0.31:97
chr12	56351346	rs1052165	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:185,112:0.38:297
chr12	56398454	rs773115	G	C	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	56417403	rs2658479	T	C	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr12	56426577	rs1619653	A	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	56428344	rs2452822	G	C	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	56435929	rs1131017	C	G	5702.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	56436472	rs705706	T	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	56477694	rs2271194	A	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	56478658	rs7971751	A	C	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.44;SOR=2.942;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	56482180	rs2292239	T	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	56500502	.	TA	T	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=4.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=1.945;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr12	56510922	.	C	CT	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.878;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr12	56525230	rs73125289	G	C	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr12	56528385	rs36091576	A	AT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=8.321;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.518;QD=1.18;ReadPosRankSum=-0.723;SOR=2.777;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr12	56532894	.	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.336;QD=1.73;ReadPosRankSum=1.293;SOR=0.151;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	56551339	rs28365930	C	CAAA	1342.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr12	56553984	rs199922384	CACTT	C	1683.73	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:159,55:0.26:214
chr12	56556167	.	T	TA	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.748;QD=1.17;ReadPosRankSum=1.022;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:234,62:0.21:296
chr12	56564056	rs60041436	CTTTT	C	716.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr12	56575742	rs773644	T	G	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	56601237	rs703823	A	G	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	56604416	rs10532115	GAT	G	3643.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	56604420	rs79677444	T	C	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	56607927	rs4759218	C	T	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	56625045	rs1274497	T	C	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	56629276	rs901073	A	C	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	56647911	rs808919	G	C	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	56649601	rs1274490	A	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	56650742	rs1274491	C	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	56685137	.	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.300;QD=2.36;ReadPosRankSum=-0.829;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr12	56717466	rs773665	C	T	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	56722060	rs1918496	T	G	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	56726518	rs2643626	G	A	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	56814256	rs10631263	G	GGAT	3059.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	56814570	rs812279	T	G	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:52,84:0.62:136
chr12	56814653	rs2291739	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:103,47:0.31:150
chr12	56815281	rs2291738	T	C	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:117,64:0.35:181
chr12	56815922	rs774047	C	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr12	56818982	rs12824030	G	C	2244.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	56818983	rs35382350	C	CT	911.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr12	56821998	rs774026	A	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr12	56822378	rs774027	T	A	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:55,103:0.65:158
chr12	56822641	rs774028	G	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	56825311	rs774033	C	T	2971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-0.617;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:76,142:0.65:218
chr12	56825981	rs774039	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	56826061	rs774040	G	A	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	56826758	rs142212258	A	AG	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=7.100;MLEAC=1;MLEAF=0.500;MQ=62.22;MQRankSum=5.292;QD=6.51;ReadPosRankSum=0.835;SOR=1.653;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr12	56827005	.	T	C	421.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr12	56827694	rs2279665	C	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:61,27:0.31:88
chr12	56827974	rs2638312	C	T	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	56845296	rs2643622	T	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	56845358	rs7953824	T	C	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	56862886	rs2657881	T	C	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	56869971	rs79174190	TTTGTCACCC	T	1031.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	56871314	rs11171862	G	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	56872770	.	GAAA	G,GA	1098.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=4.543;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.333;QD=22.42;ReadPosRankSum=0.797;SOR=1.373;set=HC	GT:AD:AF:DP	1/2:6,21,22:0.43,0.45:49
chr12	56915782	rs808929	G	A	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	56956213	rs3759091	T	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	56982290	rs2470385	C	T	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	56992377	rs7970523	A	C	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:231,129:0.36:360
chr12	56997336	.	C	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258;ClippingRankSum=0.000;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.926;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:450,70:0.13:520
chr12	56998672	rs118110498	G	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr12	57065713	rs2958154	C	T	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	57106660	rs4788	A	T	12479.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr12	57106810	rs898609	G	A	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	57108203	rs4902	A	G	8286.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr12	57109792	rs2958149	A	G	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	57109931	rs2926747	A	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	57112637	rs11171951	G	A	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	57114100	rs2926743	A	G	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	57114307	rs2958127	A	T	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	57132186	rs56401813	AT	A	3765.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	57133140	rs1131514	T	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	57137828	rs1026565	T	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	57139722	rs11331084	CA	C	189	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=1.086;QD=8.59;ReadPosRankSum=-0.797;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr12	57140455	.	CACACAA	C	580.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=6.869;MLEAC=1;MLEAF=0.500;MQ=66.55;MQRankSum=1.861;QD=10.75;ReadPosRankSum=0.871;SOR=1.835;set=HC	GT:AD:AF:DP	0/1:24,30:0.56:54
chr12	57140457	rs63023761	CACAA	C	394.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=6.869;MLEAC=1;MLEAF=0.500;MQ=66.55;MQRankSum=-1.823;QD=7.31;ReadPosRankSum=-0.854;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr12	57140506	rs2958130	G	A	12381.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr12	57346828	rs4319546	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.016;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr12	57486647	rs324019	A	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr12	57492996	rs841718	G	A	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	57502182	rs324011	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	57543572	rs10876966	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:53,15:0.22:68
chr12	57559809	rs1800174	G	A	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:358,182:0.34:540
chr12	57561379	rs1800175	G	T	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:82,46:0.36:128
chr12	57561451	rs1800176	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	57567180	rs1800177	G	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:123,53:0.30:176
chr12	57567762	rs1800194	C	T	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:115,56:0.33:171
chr12	57569513	rs1800180	G	A	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:241,117:0.33:358
chr12	57578288	rs1800181	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr12	57579727	rs1800182	A	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:242,96:0.28:338
chr12	57581028	rs6581127	C	G	8216.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	57585144	rs1800139	C	T	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:63,111:0.64:174
chr12	57587839	rs1800187	C	T	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=0.222;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:21,53:0.72:74
chr12	57588977	rs1799739	CG	C	8127.73	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:420,275:0.40:695
chr12	57589659	rs1800154	C	T	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:262,132:0.34:394
chr12	57589784	rs7397167	A	C	16223.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr12	57589865	rs1800189	C	T	7762.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:167,348:0.68:515
chr12	57590735	rs7308552	T	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	57590758	rs1800191	C	T	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:57,34:0.37:91
chr12	57590797	rs1800156	C	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:130,64:0.33:194
chr12	57590869	rs7308698	T	C	9509.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	57591226	rs1800165	T	C	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:267,158:0.37:425
chr12	57591458	rs1800166	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:65,45:0.41:110
chr12	57592557	rs1800168	C	T	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:37,75:0.67:112
chr12	57593101	rs1140648	G	A	7170.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:100,306:0.75:406
chr12	57593894	rs1800159	A	G	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr12	57594955	rs11172124	G	A	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:191,91:0.32:282
chr12	57595066	rs9669595	G	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr12	57602815	rs7956957	C	G	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr12	57603417	rs1800162	A	G	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:123,72:0.37:195
chr12	57604802	rs1800164	A	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr12	57605168	rs10783814	T	C	12323.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr12	57606386	rs7304504	A	G	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	57610616	.	GCCGCCGCTC	G	278.77	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.82;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	57614958	rs7134826	G	T	10522.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,405:1.00:406
chr12	57618619	rs61736007	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr12	57619209	rs7979061	C	G	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	57619362	rs10783816	G	A	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:333,180:0.35:513
chr12	57627525	rs117244382	A	G	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:127,179:0.58:306
chr12	57627717	rs34095989	G	A	4444.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:114,196:0.63:310
chr12	57639190	rs7139342	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	57643318	rs35971501	G	GC	740.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr12	57649840	rs4075325	C	T	2045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=8.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=0.646;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:206,110:0.35:316
chr12	57652093	.	TTTTATTTA	TTTTATTTATTTA,T	977	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.0;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=20;MQ=60.0;NF=1,1;NR=4,4;PP=159,977;QD=32.8;SC=ATTTATGCTATTTTATTTATT;SbPval=0.72;Source=Platypus;TC=13;TCF=3;TCR=10;TR=5,5;WE=57652108;WS=57652083;set=Platypus	GT:AF:DP	0/1:0.38:13
chr12	57652963	rs6581131	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	57660377	rs77936166	T	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:44,64:0.59:108
chr12	57666405	rs35275303	TG	T	219.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=1.755;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr12	57674246	rs77784795	G	C	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:92,159:0.63:251
chr12	57691990	rs34608793	AC	A	873.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr12	57693060	rs4760126	G	A	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	57703935	rs7139302	G	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr12	57704005	rs57612216	GA	G	2363.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr12	57829129	rs560048	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.449;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=1.603;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr12	57843014	rs776037	C	T	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	57843711	rs2229357	G	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:95,46:0.33:141
chr12	57845706	rs2280139	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=1.949;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr12	57848639	rs3809114	G	A	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-1.308;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr12	57848708	rs3809113	C	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.561;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr12	57849768	rs507562	C	G	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr12	57857354	rs10876987	T	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,44:0.34:130
chr12	57858414	rs3817475	A	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:190,99:0.34:289
chr12	57858835	rs3817474	G	A	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-1.082;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:145,55:0.28:200
chr12	57859431	rs2228225	G	A	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:220,130:0.37:350
chr12	57859932	rs2292657	G	A	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,55:0.42:131
chr12	57865321	rs2228224	G	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:166,86:0.34:252
chr12	57865821	rs2228226	G	C	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:107,73:0.41:180
chr12	57865928	rs474058	A	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	57869241	rs527226	T	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	57869447	rs2277318	T	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:76,44:0.37:120
chr12	57869476	rs2277317	G	A	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-1.038;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:57,35:0.38:92
chr12	57869486	rs2277316	A	G	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.305;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-1.294;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:61,37:0.38:98
chr12	57869500	rs524522	A	C	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	57869530	rs3216740	CA	C	1142.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:82,44:0.35:126
chr12	57869582	rs2277315	T	C	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:151,81:0.35:232
chr12	57870121	rs486699	A	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	57870155	rs11544238	A	C	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=1.171;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:112,50:0.31:162
chr12	57870463	rs10706671	AG	A	1985.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:146,67:0.31:213
chr12	57870648	rs512490	A	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	57871555	rs3825080	A	G	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	57882776	rs55727879	T	A	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=-0.395;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:30,71:0.70:101
chr12	57883801	rs899653	G	A	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	57891804	rs537161	T	C	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	57905687	rs1284467	A	G	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	57920262	rs2127318	T	G	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	57940749	rs775325	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	57958313	rs775322	A	G	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=1.202;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:19,53:0.74:72
chr12	57961444	rs371727146	CT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=11.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.155;SOR=3.401;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr12	57968738	rs11172254	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr12	57970463	.	A	C	958.77	.	AC=1;AF=0.500;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	0/1:134,60:0.31:194
chr12	57975155	rs775246	A	C	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:271,131:0.33:402
chr12	57975570	rs775247	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	57975910	rs775248	C	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr12	57977003	rs775249	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:94,60:0.39:154
chr12	57977040	rs775250	C	A	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:56,33:0.37:89
chr12	57979190	rs1678536	C	G	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr12	57985204	rs11537654	C	T	6112.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:140,272:0.66:412
chr12	57994743	rs775235	T	G	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	57995089	rs812873	T	C	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	58000378	rs703834	G	A	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	58002599	rs2306390	C	T	9707.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:187,424:0.69:611
chr12	58003922	rs10437954	G	A	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	58004563	rs7314872	C	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr12	58005682	rs60586224	G	A	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=12.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-0.154;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:76,54:0.42:130
chr12	58007678	rs7305391	G	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr12	58008952	rs703833	C	T	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	58009202	rs2277322	T	C	2783.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:59,124:0.68:183
chr12	58009372	rs2277323	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:164,91:0.36:255
chr12	58010163	rs1564374	A	G	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	58017701	rs7314152	T	G	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:79,160:0.67:239
chr12	58018979	rs1871417	C	T	3592.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:101,162:0.62:263
chr12	58019472	rs774895	T	G	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	58022074	rs12322482	G	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:124,49:0.28:173
chr12	58023012	rs35287199	CTG	C	1101.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr12	58023981	rs715930	C	A	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:368,160:0.30:528
chr12	58024189	rs191557438	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr12	58025813	rs774896	G	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr12	58026021	rs2258877	A	G	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:245,143:0.37:388
chr12	58026159	rs774897	A	T	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:230,115:0.33:345
chr12	58089413	rs3825078	A	T	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:122,77:0.39:199
chr12	58090232	rs72303843	AGTCGG	A	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.641;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=4.135;QD=5.04;ReadPosRankSum=0.331;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr12	58090243	.	GGGC	G	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=15.579;MLEAC=1;MLEAF=0.500;MQ=61.30;MQRankSum=3.393;QD=9.49;ReadPosRankSum=-1.943;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	58090301	rs12426511	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr12	58124534	rs2301551	C	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	58124803	rs238523	C	T	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	58127766	rs238526	T	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	58128350	.	C	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.739;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:265,48:0.15:313
chr12	58129052	.	AAG	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=1.574;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:94,12:0.11:106
chr12	58129302	rs149789274	A	AC	261.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr12	58135659	rs238530	T	C	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	58142850	rs2069507	A	G	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:77,46:0.37:123
chr12	58142854	rs2069506	C	A	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:48,82:0.63:130
chr12	58144665	rs2069502	C	T	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:53,116:0.69:169
chr12	58149446	rs1689582	C	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	58150989	rs35101706	CCA	C	3021.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	58157988	rs4646536	A	G	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,78:0.67:116
chr12	58163304	rs3216815	CT	C	12076.73	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:193,346:0.64:539
chr12	58165085	rs10877013	C	T	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=1.205;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:35,63:0.64:98
chr12	58174306	rs923829	T	C	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:62,146:0.70:208
chr12	58176614	rs10747783	T	C	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:98,218:0.69:316
chr12	58177379	rs5798416	CT	C	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=7.35;ReadPosRankSum=1.221;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:35,54:0.61:89
chr12	58177437	rs2014886	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr12	58177943	rs1599932	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr12	58196447	rs10783847	G	A	5501.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:104,234:0.69:338
chr12	58196528	rs10783848	G	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:36,59:0.62:95
chr12	58202090	rs76705486	G	T	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:248,119:0.32:367
chr12	58203354	rs3825079	C	T	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:93,193:0.67:286
chr12	58204283	rs2172521	T	C	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	58208164	rs1021469	G	A	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr12	58335626	rs3751325	A	T	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:73,97:0.57:170
chr12	58339649	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.64;ReadPosRankSum=1.953;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	58350631	rs10122	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr12	59197223	rs1148531	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	59205542	.	C	CA	38.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.46;ReadPosRankSum=-1.111;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	59313151	rs12426955	G	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.406;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr12	59313248	rs12426969	G	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=0.809;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:86,43:0.33:129
chr12	59313936	rs61754220	T	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr12	59917023	rs12580155	T	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:71,33:0.32:104
chr12	59917126	rs12580166	T	A	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:271,123:0.31:394
chr12	60127590	rs2706309	A	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr12	60127612	rs2711672	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr12	60129896	rs2706306	A	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr12	60161941	rs35166468	G	GA	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr12	62104219	rs7399207	A	C	4552.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr12	62114671	rs7485027	T	C	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	62261077	rs34255534	G	GA	1128.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr12	62705960	rs17120331	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	62708442	rs10877825	G	A	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	62778065	rs2044846	A	G	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=6.783;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.000;QD=14.33;ReadPosRankSum=1.426;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr12	62783843	rs17097891	C	T	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr12	62785524	rs1532435	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-0.626;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr12	62785663	rs11174457	T	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.647;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:91,31:0.25:122
chr12	62810962	rs10459254	G	A	2033.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.101;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.85;ReadPosRankSum=0.649;SOR=0.432;set=HC	GT:AD:AF:DP	1/1:3,86:0.97:89
chr12	62861111	rs6581450	T	C	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	62883990	rs11393430	C	CT	1161.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	62888729	rs7135893	C	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	62892905	rs4025987	C	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	62902420	rs7294404	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr12	62926398	rs7957417	G	A	6101.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:109,262:0.71:371
chr12	62928633	rs10219555	G	A	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:59,107:0.64:166
chr12	62928747	rs11364534	TA	T	2915.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	62931083	rs73141045	C	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chr12	62931091	rs148881304	CTTG	C	2365.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:39,60:0.61:99
chr12	62931846	rs147032464	ATTTGT	A	1455.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr12	62943371	rs10877874	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr12	62965149	rs2270732	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr12	62972210	rs5798648	G	GT	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.577;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr12	62979216	rs11174557	G	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:172,84:0.33:256
chr12	62986620	rs12357	G	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr12	62997180	rs10877887	T	C	176.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr12	62997643	rs7302456	G	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr12	63042421	rs78348779	A	G	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,59:0.71:83
chr12	63359011	rs699595	A	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	63359549	rs143590555	ACTGCTG	A,ACTG	7612.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=240;set=Intersection	GT:AF:DP	1/2:0.58,0.42:191
chr12	63359803	rs67148667	T	TAAAAAAAA	858.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=5.630;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-2.119;QD=11.01;ReadPosRankSum=1.083;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:45,33:0.42:78
chr12	63543553	rs10747984	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.20;ReadPosRankSum=0.386;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	63543559	.	C	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.38;ReadPosRankSum=0.336;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	63543561	.	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.49;ReadPosRankSum=1.197;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	63543572	.	T	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.906;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr12	63543574	.	T	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=1.940;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr12	63543576	rs59713720	T	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=2.021;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr12	63543578	rs10784341	T	A	1562.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.89;ReadPosRankSum=1.274;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr12	63544209	rs1042615	A	G	10674.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr12	64011062	rs4105524	A	G	8008.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr12	64041195	.	C	CATAATAATA,CATAATAATAATAATA	891.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=34;set=Intersection	GT:AF:DP	1/2:0.74,0.26:19
chr12	64057447	rs35598493	CAGA	C	1815.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:96,51:0.35:147
chr12	64061745	rs11175110	C	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	64062023	rs10878073	A	C	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:76,154:0.67:230
chr12	64062052	rs10878074	G	A	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:76,194:0.72:270
chr12	64062065	rs10878075	T	C	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:85,203:0.70:288
chr12	64078548	rs61935227	G	A	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=-0.273;QD=5.75;ReadPosRankSum=-0.728;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:119,29:0.20:148
chr12	64078557	rs61935228	C	T	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-0.410;QD=5.30;ReadPosRankSum=0.259;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:126,30:0.19:156
chr12	64078612	rs61935229	G	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=0.517;QD=3.12;ReadPosRankSum=-0.311;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:137,39:0.22:176
chr12	64118558	rs3864455	A	G	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	64383670	rs3741607	T	C	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	64472803	rs789710	A	T	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr12	64474023	rs59896917	CA	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.896;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr12	64485593	rs5798729	A	ACC	2493.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	64519806	rs789722	T	C	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-1.017;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:199,88:0.31:287
chr12	64535942	rs3741608	T	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	64587633	rs699638	C	A	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	64609562	rs2335390	C	T	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	64661209	rs1657057	AT	CC	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	64669018	rs5798743	AT	A	444.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	64669090	rs1002392	C	A	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	64669270	rs10878132	C	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	64671412	rs10624687	C	CTA,CTATA	4645.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=187;set=Intersection	GT:AF:DP	1/2:0.75,0.15:176
chr12	64679694	.	CA	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.685;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:129,30:0.19:159
chr12	64697635	rs10878142	T	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	64712511	rs7955105	A	G	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	64746924	rs376117595	GT	G	244.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	64833249	rs10878172	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	64838752	rs71092967	TA	T	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.134;QD=7.08;ReadPosRankSum=1.205;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:31,50:0.62:81
chr12	64838922	rs6581565	G	T	9293.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	64858100	rs57810028	A	AT	1197.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:3,59:0.95:62
chr12	64875787	rs7486100	T	A	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	64883761	rs10878177	C	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	64891401	rs71092972	C	CT	491.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.128;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr12	65004520	rs77813527	A	G	3435.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:80,152:0.66:232
chr12	65004550	rs117122731	G	A	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:45,100:0.69:145
chr12	65133344	.	C	CA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.502;QD=7.83;ReadPosRankSum=-0.638;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	65134536	rs1690277	C	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr12	65141588	rs2230291	C	T	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:103,157:0.60:260
chr12	65146532	rs1147096	C	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.876;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:50,26:0.34:76
chr12	65146676	rs1147095	T	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:68,23:0.25:91
chr12	65150485	rs2620733	C	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:130,57:0.30:187
chr12	65222347	rs1144426	C	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr12	65460368	rs3782498	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	65462429	rs72205564	ATGTGTGTGTG	A,ATGTGTG	2999.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;QD=39.47;SOR=2.147;set=HC	GT:AD:AF:DP	1/2:0,42,34:0.55,0.45:76
chr12	65471467	rs2289936	A	G	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:46,80:0.63:126
chr12	65477525	rs67629608	TCTTTC	T	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.82;ReadPosRankSum=-0.792;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	65477613	rs150722125	TTTC	T	856.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.27;ReadPosRankSum=1.517;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr12	65514266	rs7301320	T	C	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	65563712	rs61736594	C	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.959;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:67,27:0.29:94
chr12	65609675	rs67170565	G	GT	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=0.887;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr12	65609707	rs34604927	G	GT	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=2.743;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:9,32:0.78:41
chr12	65609853	rs3817000	A	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.423;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr12	65633880	rs34562240	GTGAT	G	2583.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr12	65762703	rs57910895	AC	A	1400.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.042;QD=22.23;ReadPosRankSum=-0.852;SOR=4.582;set=HC	GT:AD:AF:DP	1/1:5,58:0.92:63
chr12	66235771	.	CT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.021;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr12	66517828	rs2464304	T	A	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	66531694	rs1185629	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	66533329	rs11176056	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr12	66546100	rs8793	A	G	3722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=0.900;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:82,173:0.68:255
chr12	66563196	rs183826075	C	T	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,55:0.66:83
chr12	66605228	rs1152888	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	66696255	rs3741605	T	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:76,39:0.34:115
chr12	66696410	rs3741604	C	T	2083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.259;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=5.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.488;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:147,112:0.43:259
chr12	66698438	rs2118139	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr12	66698461	rs2118140	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr12	66698752	.	A	AT	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.174;QD=1.47;ReadPosRankSum=-0.825;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:102,22:0.18:124
chr12	66698895	rs4430553	T	C	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.632;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:69,27:0.28:96
chr12	66698954	rs1971302	C	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chr12	66716345	rs68047161	CAAA	C,CAA	525.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=7.179;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-0.396;SOR=2.925;set=HC	GT:AD:AF:DP	1/2:6,16,12:0.47,0.35:34
chr12	66717692	rs7969887	T	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr12	66717716	rs7957877	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:61,25:0.29:86
chr12	66725160	rs1185244	C	T	10357.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr12	66725202	rs1168312	C	T	6584.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:142,299:0.68:441
chr12	66731864	rs1168329	C	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	66732057	rs1183274	C	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	66771108	rs35635542	AT	A	1073.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	66771121	rs148141593	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	66786073	rs7970076	A	G	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	66786091	rs13277	G	C	6621.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr12	66786341	rs7970771	G	A	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	66786644	rs2270594	G	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	66814466	rs7397861	C	G	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	66814487	rs7397862	C	A	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	66826527	rs143524823	GAAGT	G	587.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	66826555	rs6581694	A	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	66838272	.	CA	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=2.214;QD=2.02;ReadPosRankSum=-0.416;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr12	66909375	rs146874960	CA	C	3763.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:67,108:0.62:175
chr12	66909389	rs12316942	C	T	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	66933149	rs10219689	C	T	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	67701103	rs812325	G	A	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr12	67706466	rs1060350	G	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:57,91:0.61:148
chr12	68042982	rs141665168	G	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:82,159:0.66:241
chr12	68051420	rs34166200	C	A	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:148,88:0.37:236
chr12	68052178	rs3741644	G	T	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:42,101:0.71:143
chr12	68552041	rs2234686	TA	T	1314.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:8,78:0.91:86
chr12	68646521	rs2227491	T	C	6114.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:135,279:0.67:414
chr12	68688939	rs7958232	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	68696661	.	C	CAA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.234;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	68707576	rs4575357	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	68708761	rs2306393	C	T	17611.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr12	68717038	rs80219525	T	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	68719216	rs2870812	G	A	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	68720335	rs17224845	C	T	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	68720627	rs962976	G	A	7457.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr12	68721040	rs962977	A	G	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	68724951	rs3741808	G	T	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	69042690	rs3213921	T	G	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr12	69048131	rs112638624	T	TG	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.549;QD=9.89;ReadPosRankSum=1.198;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	69084541	rs11608404	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:80,33:0.29:113
chr12	69090573	rs35640989	C	CT	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-0.294;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr12	69103668	rs61024131	C	CA	119.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.253;QD=11.91;ReadPosRankSum=-0.000;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr12	69119617	rs10628631	G	GTT	125.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.43;ReadPosRankSum=1.221;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	69128684	rs74839420	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr12	69141678	rs57821268	T	A	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr12	69202164	rs937283	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr12	69202326	rs2870820	C	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:85,38:0.31:123
chr12	69207162	rs1470383	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	69209525	rs3730522	A	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr12	69218038	rs2291857	T	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	69250548	rs3741598	C	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	69265578	rs2228654	A	G	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:245,130:0.35:375
chr12	69279736	rs2701085	A	G	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	69279764	rs79448109	C	T	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr12	69633379	rs2305642	A	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=6.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-0.264;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr12	69645864	rs490872	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.757;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr12	69646914	rs2305641	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr12	69652336	rs5798930	G	GT	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.040;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:85,28:0.25:113
chr12	69653146	rs2231700	T	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr12	69667075	rs1463335	T	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=1.429;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:73,46:0.39:119
chr12	69753595	rs622656	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	69753830	rs623853	G	A	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	69753847	rs554591	T	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	69756762	rs10784775	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=26.27;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	69759551	rs11286051	AT	A	1701.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	69764388	rs2291005	A	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	69967862	rs547497	G	A	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	69979115	rs2601007	G	C	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	69980028	rs485288	G	A	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	69980141	rs484319	G	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	69980447	.	C	CA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=2.479;QD=2.55;ReadPosRankSum=-0.223;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr12	69981862	rs530701	G	A	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	69982129	rs710777	G	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	69985771	rs137875319	CTT	C	1422.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	69987494	rs710773	G	A	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	69991627	rs710765	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	70064146	rs17813545	T	C	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:126,97:0.43:223
chr12	70064295	rs3847772	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:114,48:0.30:162
chr12	70065126	rs200930771	CTT	C,CT	1011.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.030;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.300;QD=18.40;ReadPosRankSum=1.119;SOR=1.958;set=HC	GT:AD:AF:DP	1/2:2,19,34:0.35,0.62:55
chr12	70070942	rs710718	A	G	6691.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	70072479	rs3741755	C	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:81,52:0.39:133
chr12	70078172	rs710714	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	70078575	rs12425422	T	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr12	70088085	rs3050191	AGT	A	2882.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr12	70091356	rs710710	G	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	70091432	rs775429	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	70178374	rs1602954	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	70195293	rs10879014	T	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	70195341	rs111879916	A	ATATTTTT	711.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr12	70195585	rs145460630	A	G	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:45,78:0.63:123
chr12	70206894	rs1305051	ATAG	A	2351.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr12	70209121	rs139555957	ATC	A	3611.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:39,100:0.72:139
chr12	70273303	rs1240286	C	G	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	70273985	rs7295793	T	G	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:82,136:0.62:218
chr12	70274101	rs7310544	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:37,69:0.65:106
chr12	70274160	rs1240287	G	A	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	70280797	rs1612447	T	C	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	70321450	rs1239822	C	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	70330087	rs813147	A	G	7850.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr12	70330485	rs73136746	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:42,12:0.22:54
chr12	70351684	rs10879065	C	A	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.243;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:129,66:0.34:195
chr12	70351905	rs2307086	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.370;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:62,19:0.23:81
chr12	70351924	rs11177996	A	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.883;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-1.421;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:72,25:0.26:97
chr12	70352021	rs2307087	C	T	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:237,123:0.34:360
chr12	70672149	rs11611635	T	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	70724007	rs2272180	A	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr12	70740194	rs3817487	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr12	70915347	rs369876	A	G	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	70928724	rs582954	A	G	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	70930061	rs2278346	T	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr12	70932572	rs17226374	T	C	1256.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr12	70932573	rs11332712	TA	T	1247.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr12	70933687	rs919595	A	G	6869.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	70938176	rs4761221	G	A	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	70938279	rs10531402	AGAG	A	2209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.272;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.614;QD=9.36;ReadPosRankSum=1.014;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:170,66:0.28:236
chr12	70949620	rs2278341	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	70949973	rs11424259	A	AT	965.25	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:10,56:0.85:66
chr12	70953277	rs2303963	T	C	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr12	70953456	rs2303962	T	C	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	70953477	rs34465365	C	T	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	70954814	rs12580379	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr12	70956935	rs11178291	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	70963619	rs2304821	G	A	3634.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:98,171:0.64:269
chr12	70963665	rs139698072	G	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:172,87:0.34:259
chr12	70983895	rs2165627	A	C	5020.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:112,215:0.66:327
chr12	70984019	rs1465934	C	T	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:78,192:0.71:270
chr12	70988149	rs17814392	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr12	70988287	rs34615667	A	G	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,116:0.64:180
chr12	70989977	rs11178317	T	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:95,54:0.36:149
chr12	70990054	rs2465811	T	C	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-0.009;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:43,68:0.61:111
chr12	70990136	rs6581949	A	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=1.194;SOR=1.562;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr12	71002865	rs2717430	T	A	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	71002893	rs2252784	C	T	6417.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	71003360	rs2717431	T	C	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	71003424	rs7961490	G	A	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:247,114:0.32:361
chr12	71016340	rs7298147	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-1.402;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:48,23:0.32:71
chr12	71029431	rs2717417	C	T	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:142,70:0.33:212
chr12	71029680	rs74101511	A	G	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:97,71:0.42:168
chr12	71031288	.	G	C	481.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr12	71050694	rs5798997	T	TA	441.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr12	71056569	rs7969289	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	71066558	rs74959294	A	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr12	71066824	.	AAAAAAG	A	91.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.31;ReadPosRankSum=0.674;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr12	71078528	rs35390084	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr12	71139664	rs3803036	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.738;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr12	71286693	rs12822996	T	C	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,79:0.68:117
chr12	71314102	rs12830783	C	T	1664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=0.164;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:46,76:0.62:122
chr12	71509607	rs71931636	ACTCT	A	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr12	71509652	rs34349223	T	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-2.070;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:72,33:0.31:105
chr12	71509793	rs36021752	A	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr12	71509814	rs141855745	G	GTTCCCTGTATAATTTT	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.291;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr12	71519096	rs1051344	G	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:173,70:0.29:243
chr12	71523134	rs1051334	A	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.099;QD=4.81;ReadPosRankSum=-0.252;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:71,33:0.32:104
chr12	71523199	rs143821581	TAA	T	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.363;QD=6.84;ReadPosRankSum=0.729;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr12	71526414	rs2270588	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr12	71526709	rs3816942	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr12	71531663	rs2270585	A	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	71532099	rs2270584	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr12	71533534	rs3763978	C	G	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.713;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:80,29:0.27:109
chr12	71947173	rs1148985	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr12	71955394	rs1280603	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	71960208	rs1797372	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	71960329	rs1797373	G	A	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	71960533	rs1797374	G	A	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	71960584	rs1726469	T	C	12512.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr12	71972787	rs1148997	T	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	72004884	rs34631263	G	GA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.779;QD=3.18;ReadPosRankSum=-0.882;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr12	72008246	rs2288963	T	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr12	72013832	rs1298463	A	G	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.421;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=0.635;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:95,60:0.39:155
chr12	72019989	rs55719302	T	TAC	3278.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:20,116:0.85:136
chr12	72022556	rs1148996	C	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr12	72022589	rs76071350	T	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=1.106;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr12	72023336	.	T	TACACACACACAC	146.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr12	72026872	rs1011331	T	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.802;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.138;SOR=0.237;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr12	72028607	rs34399921	TA	T	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.644;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	72030252	rs1149006	T	C	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-0.869;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:57,34:0.37:91
chr12	72038935	rs17110081	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	72050472	.	AAAAT	A	55	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=5;HapScore=2;MGOF=3;MMLQ=25;MQ=60.0;NF=1;NR=1;PP=55;QD=35.0;SC=TGTCAGGCAAAAAATAAATAA;SbPval=0.51;Source=Platypus;TC=10;TCF=3;TCR=7;TR=2;WE=72050483;WS=72050462;set=Platypus	GT:AD:AF:DP	1/0:8,2:0.20:10
chr12	72094530	rs367801163	TA	T	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.010;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr12	72233340	rs3809148	G	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:74,30:0.29:104
chr12	72287220	rs139574467	A	ATG	207.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr12	72307616	rs3759171	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:66,29:0.31:95
chr12	72372601	rs4760816	C	T	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	72372862	rs7305115	A	G	11700.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr12	72388374	rs1007023	G	T	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	72416235	rs4290270	A	T	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr12	72666485	rs74594364	A	G	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.11;ReadPosRankSum=-0.474;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr12	72666488	rs78720771	G	A	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.11;ReadPosRankSum=0.442;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr12	72666499	rs79761722	A	G,AAGG	1547.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.910;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=49.93;ReadPosRankSum=2.429;SOR=2.546;set=HC	GT:AD:AF:DP	1/2:2,21,8:0.68,0.26:31
chr12	72893531	rs1444607	T	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr12	72935947	rs723867	G	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	73012649	rs111312234	CT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.251;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr12	74932159	rs590352	G	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr12	75601389	rs61735712	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr12	75601443	rs61932914	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	75601864	rs73187152	G	A	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr12	75601879	rs73187154	G	T	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr12	75687185	rs7967562	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr12	75692607	rs7485576	G	A	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr12	75706720	rs60971359	T	C	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:20,65:0.76:85
chr12	75710004	rs10879900	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr12	75715330	rs10879901	C	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-1.135;SOR=0.279;set=HC	GT:AD:AF:DP	0/1:56,14:0.20:70
chr12	75760742	rs12366348	G	A	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=0.660;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:37,73:0.66:110
chr12	75784773	rs7978856	C	T	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=1.166;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr12	75785100	rs11180483	C	T	4040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.891;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:102,182:0.64:284
chr12	75785468	rs4393363	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr12	75796721	rs7135440	G	T	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr12	75816612	rs1543946	C	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr12	75816814	rs144850646	G	GACA	1610.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr12	75874913	rs2242435	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr12	75875576	rs1909979	C	T	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:72,143:0.67:215
chr12	75900702	rs2704766	G	A	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:66,143:0.68:209
chr12	76357719	rs61925128	C	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr12	76424937	rs71716769	TTGC	T	7723.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:12,190:0.94:202
chr12	76444510	rs4831914	G	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-1.719;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:41,25:0.38:66
chr12	76447792	rs35076461	AT	A	970.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	76447846	.	G	A	122.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr12	76449900	rs1059143	T	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	76450465	rs113043714	TA	T	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.691;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:94,31:0.25:125
chr12	76451696	rs2163913	T	C	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	76453966	rs4663	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr12	76461145	rs7972289	C	T	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	76461257	rs3214625	T	TA	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr12	76462612	rs10880034	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr12	76740149	rs35676114	G	A	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:189,88:0.32:277
chr12	76762923	rs10656017	A	AAAT	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr12	76765402	rs73383543	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr12	76767065	rs71311107	A	AT	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.904;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:56,23:0.29:79
chr12	76769209	rs7299563	G	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr12	76780471	rs73137003	A	T	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-0.612;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:37,61:0.62:98
chr12	76786349	rs4761423	G	A	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:183,73:0.29:256
chr12	76804168	rs35236201	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	76804493	rs34492199	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	76805983	rs12814818	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr12	76852809	rs34838249	C	T	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	77158419	rs1017784	T	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	77199250	rs140164197	AACTTG	A	1407.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr12	77202798	rs10778920	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=10.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-1.190;SOR=1.453;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr12	77214681	rs1477748	G	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr12	77214788	rs2306142	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr12	77216330	rs10618043	AT	A	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.703;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.948;QD=6.29;ReadPosRankSum=0.974;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:15,32:0.68:47
chr12	77235768	rs33996476	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	77236968	rs1979743	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr12	77239420	rs143729859	AAAAT	A	1351.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr12	77243103	rs34062414	C	CAAA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-0.720;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr12	77253236	.	CT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.391;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr12	77254207	rs35557984	GA	G	1317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.335;QD=5.19;ReadPosRankSum=-0.442;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:162,92:0.36:254
chr12	77256477	rs2047226	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr12	77256681	rs2047227	T	G	2130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-2.556;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:206,117:0.36:323
chr12	77421972	rs71743795	ATCTC	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=9.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.286;SOR=2.621;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr12	77424061	rs61758459	G	A	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.239;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:165,64:0.28:229
chr12	77424135	rs10862960	C	T	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr12	77426776	rs753266	G	A	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	77438436	rs2242384	T	C	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:207,96:0.32:303
chr12	77438607	rs2242383	T	C	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:119,49:0.29:168
chr12	77449790	rs310791	A	G	6037.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	77966154	rs4761386	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	78225110	rs12227066	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr12	78225186	rs17195772	C	A	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr12	78225374	rs10735309	A	G	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	78334053	rs1731740	G	C	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:215,101:0.32:316
chr12	78391958	rs11107763	A	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	78415452	rs1382645	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr12	78511755	rs300442	T	C	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr12	78513833	rs55670442	T	TATATA	440.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr12	78530979	rs1852464	G	A	2760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=2.080;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:64,125:0.66:189
chr12	78531156	rs2290103	A	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr12	78531207	rs300462	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr12	78534233	rs1726427	A	G	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:15,50:0.77:65
chr12	78537016	rs451753	A	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr12	78537138	rs10661027	C	CGGT	1323.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr12	78538648	rs411935	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	78538711	.	A	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.99;ReadPosRankSum=1.482;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	78538714	.	AAAAAAAAAAAAAAG	A	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=7.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.68;ReadPosRankSum=1.083;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr12	78540174	rs34144410	TA	T	224.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr12	78542594	rs444864	T	G	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr12	78542602	rs3214877	A	AT	1551.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr12	78542699	rs366527	T	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr12	78562687	rs1726431	A	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	78569059	rs2442134	G	A	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	78570914	rs1020462	G	C	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	78573604	rs2305974	A	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr12	78582362	rs300513	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	78582566	rs400289	A	G	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	78590946	rs300498	A	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	78590983	rs300497	A	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr12	78591249	rs981213	C	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr12	78592992	rs11272983	ATGGGAACATTATTAC	A	1789.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr12	78593070	rs140965470	AAATTT	A	1759.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr12	78594405	rs3214044	T	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-1.984;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	78598891	rs9971904	G	A	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=-0.931;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:34,89:0.72:123
chr12	79611374	rs2037743	C	T	7383.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr12	79611536	rs2400390	T	C	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	79685913	rs2272500	C	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:72,50:0.41:122
chr12	79747487	rs1732664	T	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	80014907	rs2307223	A	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	80169497	rs5799439	TA	T	653.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.820;QD=13.07;ReadPosRankSum=-1.005;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:7,43:0.86:50
chr12	80169697	rs369362742	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=6.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.787;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:127,32:0.20:159
chr12	80175764	rs2111687	G	A	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	80189344	rs17299883	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	80201271	rs34190005	TTA	T	395.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	80216060	rs3849223	C	A	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	80603406	rs4842344	A	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	80626970	rs1451105	T	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	80645734	rs11438265	A	AT	1634.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	80645799	rs2100258	A	T	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.47;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	80647155	rs10862083	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	80648148	rs144548100	ATTTAT	A	416.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=37.88;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	80648399	rs7295623	C	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	80650276	rs147846753	T	TCAAA,TCAAACAAA	1122.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;QD=41.58;SOR=3.690;set=HC	GT:AD:AF:DP	1/2:0,20,7:0.74,0.26:27
chr12	80655692	rs10778721	G	A	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	80660499	rs7313132	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	80661189	rs11114377	T	A	1082.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.65;ReadPosRankSum=-0.764;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chr12	80663825	rs11324174	GA	G	800.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.726;MLEAC=2;MLEAF=1.000;MQ=60.51;MQRankSum=0.750;QD=13.35;ReadPosRankSum=-0.562;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:8,52:0.87:60
chr12	80665397	rs4483657	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	80671988	.	T	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=1.578;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:138,24:0.15:162
chr12	80672064	rs1376384	A	G	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:44,68:0.61:112
chr12	80707153	rs1037335	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	80707236	rs11114396	T	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:37,9:0.20:46
chr12	80712307	rs7963215	A	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	80712420	rs10778725	G	A	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	80722385	rs71094975	C	CT	654.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr12	80726693	rs117863885	A	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr12	80729948	.	CT	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.461;QD=2.32;ReadPosRankSum=0.723;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:45,27:0.38:72
chr12	80730561	rs11300714	CT	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.04;ReadPosRankSum=0.234;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	80730664	rs10862093	G	A	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=-0.451;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:16,36:0.69:52
chr12	80735771	rs10778727	T	C	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr12	80746234	rs147703967	G	GAAT	2930.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	80747209	rs7312569	C	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:186,76:0.29:262
chr12	80747242	rs7297767	A	G	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	80749392	rs6539501	A	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	80750659	rs11836060	G	A	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.496;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:167,66:0.28:233
chr12	80750741	rs5799468	G	GA	1789.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr12	80752660	rs2034528	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	80760291	rs60847056	T	TTATATATA,TTATATATATATATATA	841.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=27;set=Intersection	GT:AF:DP	1/2:0.69,0.31:16
chr12	80760470	rs34113015	GT	G	901.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	80761411	rs11114416	G	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr12	80761430	rs1551118	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	80761465	rs2717482	G	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	80761617	.	T	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.932;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	80762163	rs57527553	T	TC,TCC	2982.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=195;set=Intersection	GT:AF:DP	1/2:0.14,0.83:146
chr12	80762246	rs10778730	G	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	80764574	rs10862099	C	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	80765683	rs5799469	TGAA	TAA,T	547.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=13;set=Intersection	GT:AF:DP	1/1:1.00:13
chr12	80765685	rs201680829	AAG	A	547.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	80765687	.	G	A	195	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=3;MGOF=23;MMLQ=24;MQ=60.0;NF=9;NR=0;PP=195;QD=25.5301347275;SC=TTTCTATGAAGGCTTTGTGGT;SbPval=1.0;Source=Platypus;TC=13;TCF=13;TCR=0;TR=9;WE=80765695;WS=80765673;set=Platypus	GT:AD:AF:DP	1/1:4,9:0.69:13
chr12	80765741	rs1037336	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	80765800	rs1551122	A	G	1273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=2.733;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:27,60:0.69:87
chr12	80765933	rs10862100	C	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr12	80765945	rs10778734	G	A	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	80771813	rs2717477	G	A	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	80816492	rs4482093	C	T	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	80818876	rs10746164	A	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	80818964	rs10746165	G	T	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr12	80821109	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	80821391	rs61127339	C	CT	1935.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:6,90:0.94:96
chr12	80821446	rs7294514	T	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	80828629	rs4128302	T	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	80828679	rs4128303	C	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	80828843	rs9669382	A	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr12	80838012	rs10746166	T	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	80840771	rs7311270	G	A	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr12	80842199	rs11513908	A	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr12	80848925	rs7979859	T	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:70,27:0.28:97
chr12	80849063	rs7980018	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr12	80849328	rs4482094	G	A	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	80852504	rs11114457	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:95,35:0.27:130
chr12	80852758	rs10862125	C	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:96,60:0.38:156
chr12	80853424	rs4439581	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr12	80853649	rs11837911	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=1.449;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	80855597	rs4499068	T	C	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	80855803	rs7137294	G	A	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:56,100:0.64:156
chr12	80855818	rs7976388	A	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:84,48:0.36:132
chr12	80855835	rs11524045	C	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;MQ=59.86;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr12	80855856	rs4448754	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr12	80862469	rs56105723	A	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr12	80878174	rs7311413	T	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	80878181	rs56351124	C	CT	1693.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	80889165	rs145970310	T	TTTG	1160.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr12	80889829	rs10778752	T	A	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	80890325	rs56929349	T	TG	5568.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	80899901	rs11114486	C	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	80900397	rs12824064	C	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	80933465	rs2222752	G	A	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	80935300	rs11114502	A	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	80998917	rs182230226	T	C	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:96,168:0.64:264
chr12	81009858	rs3994957	TTA	T	89.76	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	81015822	rs149289370	TC	T	556.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr12	81028838	rs61729309	C	T	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:79,108:0.58:187
chr12	81051624	rs73150798	A	G	62.79	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	81063264	rs1163041	C	T	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr12	81066851	rs950124	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	81110765	rs1163261	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr12	81112882	rs11114581	A	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr12	81226432	rs12297928	G	A	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.70;ReadPosRankSum=-0.601;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr12	81226436	rs12311734	C	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.62;ReadPosRankSum=-0.115;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr12	81329536	rs2682818	A	C	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	81528503	rs73359349	C	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr12	81528625	rs61745251	C	T	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:143,73:0.34:216
chr12	81533078	rs2107415	G	C	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr12	81533096	rs3741980	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	81552338	rs11835646	C	T	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	81624964	rs2293651	A	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	81647065	rs2895868	G	A	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	81647471	rs2400895	T	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	81655861	rs2272501	G	C	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	81660963	rs35647579	C	CA	889.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.335;QD=21.18;ReadPosRankSum=0.059;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr12	81661039	rs12826016	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	81661911	.	CTT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=1.227;QD=1.06;ReadPosRankSum=1.460;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr12	81661915	rs12304688	T	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.815;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-0.261;QD=3.10;ReadPosRankSum=0.873;SOR=1.303;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr12	81661945	rs6539566	A	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	81688958	rs1882188	C	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	81695836	rs10862288	G	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	81696399	rs1921053	G	A	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	81696487	rs1921052	G	A	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	82617279	rs7304928	G	C	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	82747148	rs139285654	A	G	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,36:0.88:41
chr12	82751955	rs6539662	A	G	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	82752633	rs4882530	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.44;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	82783668	rs10778908	C	T	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	82792787	rs4296098	C	A	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	82828426	rs10683876	T	TATAAG	3488.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	82832418	rs2717448	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	82850427	rs2731290	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	83324499	rs10746259	G	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr12	83424455	rs11115554	A	T	757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=0.393;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:19,41:0.68:60
chr12	83525962	rs7970515	T	C	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:75,123:0.62:198
chr12	85277608	rs17183612	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:200,84:0.30:284
chr12	85515519	rs61738629	G	A	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.000;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:82,38:0.32:120
chr12	85674279	.	G	T	384.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr12	86229880	rs144771248	GAC	G	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.751;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr12	86268179	rs1800832	A	G	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:46,94:0.67:140
chr12	88177722	rs1796320	G	A	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:109,60:0.36:169
chr12	88177791	rs1675574	C	T	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:163,111:0.41:274
chr12	88178271	rs112316052	TGCC	T	2964.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:122,81:0.40:203
chr12	88379566	rs10858676	A	G	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	88440676	rs9262	G	C	7144.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	88453608	rs2471512	C	T	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	88454594	rs11405846	T	TA	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	88473049	rs2468245	C	T	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	88478316	rs11356711	TA	T	569.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	88483272	rs10717563	TA	T	4713.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr12	88496838	rs2471532	C	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	88505078	rs2468255	T	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	88505633	rs45465996	A	G	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:133,97:0.42:230
chr12	88522823	rs71082425	A	AC	4037.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	88522936	rs79458642	C	CTTA	971.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	88525048	rs59949315	AT	A	410.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	88534632	.	G	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.749;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr12	88546982	rs2468229	A	G	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	88547277	rs2468230	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	89743223	rs704075	G	A	7240.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr12	89745477	rs2279574	C	A	5423.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:178,259:0.59:437
chr12	89745557	rs61734372	G	A	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:120,168:0.58:288
chr12	89819166	rs76714924	C	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr12	89853387	.	CA	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.525;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr12	89853408	rs4842658	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr12	89853694	rs7953615	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	89861265	rs9308287	C	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr12	89861529	rs10506972	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-1.025;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr12	89864432	rs10777167	T	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr12	89865545	rs10665702	C	CTTT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.912;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr12	89885923	rs6538189	C	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr12	89885942	rs6538190	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr12	89917518	rs2230281	A	G	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:190,92:0.33:282
chr12	89919630	rs67346689	ACC	A	536.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr12	90015579	rs35089871	C	CA,CAA	903.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.825;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.408;QD=16.43;ReadPosRankSum=0.284;SOR=1.473;set=HC	GT:AD:AF:DP	1/2:6,37,12:0.67,0.22:55
chr12	90024549	.	A	AATATATAAATAT	1271.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.62;QD=47.10;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	91334194	rs4520662	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	91372042	rs66600255	GA	G	310.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=16.35;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	91449990	rs2735333	C	T	8779.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr12	91539784	rs1803343	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr12	92539344	rs709223	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	92539378	rs1049979	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	92816525	rs73222027	G	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=1.918;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	92818482	rs12580153	C	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.925;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:85,35:0.29:120
chr12	92818786	rs1515565	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.611;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr12	92821674	rs61935211	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr12	92821860	rs11284604	CT	C	876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.649;QD=5.62;ReadPosRankSum=0.593;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:121,35:0.22:156
chr12	93131203	rs2036553	A	C	4082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=0.336;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:89,175:0.66:264
chr12	93139392	rs12305577	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr12	93147901	rs74784157	C	T	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.38;ReadPosRankSum=-1.119;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:16,41:0.72:57
chr12	93147907	rs9669519	A	T	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=0.645;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:21,47:0.69:68
chr12	93150060	rs7316541	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr12	93150102	rs924326	T	C	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:25,77:0.75:102
chr12	93155415	.	A	AAAGG	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=61.94;MQRankSum=1.276;QD=21.24;ReadPosRankSum=2.593;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	93155535	rs1504907	G	A	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.88;QD=26.73;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	93171278	rs4760496	T	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:179,95:0.35:274
chr12	93196422	rs10745623	T	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr12	93202726	rs61933720	G	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr12	93203036	rs111613660	C	CAA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.676;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr12	93206878	rs3925797	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	93226666	rs7296923	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr12	93236402	rs7300619	C	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	93247775	rs3065021	G	GATA	745.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr12	93258665	rs17194451	A	G	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.166;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:325,122:0.27:447
chr12	93258808	rs61935280	T	C	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=1.669;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:108,45:0.29:153
chr12	93289284	rs56326442	GA	G	394	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.500;QD=11.59;ReadPosRankSum=0.855;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr12	93609340	rs7305552	A	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	93721801	rs7976742	A	G	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-1.493;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr12	93721949	rs11380531	A	AC	288.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	93805407	rs35124423	T	TA	376.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr12	93862989	rs4761720	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr12	93863162	rs4761721	C	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.03;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	93863162	.	CTTTTAAAC	GTTTTAAAC,GTTTTAAAG	270	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.08;FR=0.5000,0.5000;HP=5;HapScore=2;MGOF=4;MMLQ=26;MQ=60.0;NF=6,2;NR=21,13;PP=88,270;QD=4.54708194619;SC=TGTTTAAAAACTTTTAAACTT;SbPval=0.56;Source=Platypus;TC=27;TCF=6;TCR=21;TR=27,15;WE=93863178;WS=93863152;set=Platypus	GT:AF:DP	0/1:1.00:27
chr12	93863170	rs4761722	C	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=-0.808;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr12	93864474	rs1552861	A	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	93873089	rs34328828	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.91;ReadPosRankSum=0.501;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	93881574	rs139138639	C	CT	110.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	93894779	rs6538424	A	T	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	93894823	rs6538425	G	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	93897779	rs35963955	C	CT	1049.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.323;QD=19.81;ReadPosRankSum=0.221;SOR=0.515;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr12	93898249	rs7971966	A	G	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	93966502	rs41477552	C	G	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:196,106:0.35:302
chr12	94253033	rs10859603	T	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,64:0.72:89
chr12	94562802	rs2361358	G	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	94562875	rs2361359	C	G	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr12	94563134	rs3214968	A	AT	2266.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=24.37;SOR=2.960;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	94575157	rs3794220	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-1.211;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	94575162	rs113295483	CA	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=7.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.135;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	94603249	rs2610671	G	A	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	94603300	rs2305971	C	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr12	94620264	rs62973962	A	AT	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=5.571;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.319;QD=3.01;ReadPosRankSum=1.534;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:56,23:0.29:79
chr12	94621058	rs2291333	T	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr12	94621138	rs2291332	G	A	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr12	94634187	rs66824619	T	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr12	94637557	rs864106	C	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	94648493	rs7980141	A	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:93,40:0.30:133
chr12	94648945	rs2291326	T	C	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:75,47:0.39:122
chr12	94649103	rs865569	T	C	6812.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	94653227	rs2306664	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:82,36:0.31:118
chr12	94671565	rs832507	A	G	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:45,105:0.70:150
chr12	94671743	rs832506	G	C	6558.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	94671922	rs11341959	CA	C	4318.73	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:115,228:0.66:343
chr12	94673509	rs10713724	GC	G	2215.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:49,83:0.63:132
chr12	94673607	rs4761469	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,39:0.35:110
chr12	94688232	rs1880934	C	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr12	94698880	rs3803071	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	94769758	rs4761611	A	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=1.528;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:70,22:0.24:92
chr12	95044161	rs1274523	A	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	95044268	rs1274524	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-2.478;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:60,36:0.38:96
chr12	95228007	rs2289031	T	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	95228286	rs2289030	G	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:86,54:0.39:140
chr12	95322133	rs2033092	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr12	95390595	rs10654978	C	CAA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=0.000;QD=6.86;ReadPosRankSum=2.301;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	95390810	rs7973115	G	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr12	95396669	rs6538588	A	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr12	95397552	rs835044	T	C	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	95422108	rs35583	A	G	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=0.878;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:32,36:0.53:68
chr12	95425033	rs141022772	ATAAT	A	1332.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr12	95434116	rs249141	T	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	95443034	rs249145	G	C	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:56,87:0.61:143
chr12	95453762	.	TAA	T	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.740;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr12	95475444	rs143543201	G	GAT	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.016;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=5.71;ReadPosRankSum=1.996;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr12	95475461	rs72413882	AT	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=1.41;ReadPosRankSum=1.430;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr12	95475517	rs183391223	A	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	95498747	rs11331948	GA	G	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.381;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.254;QD=3.79;ReadPosRankSum=0.077;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:65,51:0.44:116
chr12	95500635	rs61938198	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:43,14:0.25:57
chr12	95500700	rs10694512	A	AAACAAAACAAAAC	1829.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.85;MQRankSum=9.694;QD=11.02;ReadPosRankSum=-1.365;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:121,45:0.27:166
chr12	95500727	rs7138545	C	G	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=10.622;QD=7.56;ReadPosRankSum=2.453;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:196,72:0.27:268
chr12	95510811	rs6419371	T	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr12	95602569	rs11107934	A	G	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr12	95604290	rs10507047	T	C	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:168,75:0.31:243
chr12	95611141	rs6538617	C	T	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=6.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=2.486;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:88,59:0.40:147
chr12	95611185	rs6538618	T	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	95611824	rs74792623	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr12	95617758	rs10507048	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr12	95617829	rs10777677	A	G	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	95618094	rs66936338	CTT	C	1083.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=23.56;ReadPosRankSum=0.612;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:8,38:0.83:46
chr12	95637137	.	CAA	C	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.747;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=4.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.958;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:47,23:0.33:70
chr12	95637174	rs141078164	C	CTCAGCT	8585.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:105,198:0.65:303
chr12	95637234	rs1873052	C	T	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:408,231:0.36:639
chr12	95637578	rs1873053	C	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr12	95639261	rs7979908	G	A	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	95650846	rs3751271	T	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr12	95651093	rs3751272	T	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr12	95651888	rs6538624	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	95656936	rs12305760	A	G	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.097;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:157,60:0.28:217
chr12	95668437	rs3816838	G	T	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	95676053	rs3215007	T	TG	2075.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	95681554	rs12424550	C	T	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:76,128:0.63:204
chr12	95694394	rs14121	G	A	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	95702385	rs11107973	T	C	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.797;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:101,41:0.29:142
chr12	95771236	rs2727663	T	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	95774594	rs142244486	C	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr12	95774672	rs112647662	C	G	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr12	95878751	rs301036	T	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr12	95897997	rs2769469	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	95918610	rs11108090	T	G	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	95922530	rs374528624	G	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr12	95927037	rs3812814	A	G	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:188,116:0.38:304
chr12	95927762	rs3812813	T	C	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:276,151:0.35:427
chr12	95966944	rs4762567	A	G	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:45,67:0.60:112
chr12	96104461	rs2431012	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:85,41:0.33:126
chr12	96106943	rs4129599	T	C	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:97,51:0.34:148
chr12	96217159	rs10777742	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr12	96253003	rs66876037	A	AG	305.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	96254880	rs17024787	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-1.762;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	96263437	rs10735335	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-0.852;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr12	96263437	.	GAC	AAA	484	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=2;NR=10;PP=484;QD=44.7889895719;SC=TGAGCCATGTGACTAGAAGAC;SbPval=0.49;Source=Platypus;TC=37;TCF=5;TCR=32;TR=12;WE=96263447;WS=96263427;set=Platypus	GT:AD:AF:DP	1/0:25,12:0.32:37
chr12	96263439	rs10735336	C	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.712;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-0.647;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr12	96266035	rs2117914	T	C	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:186,95:0.34:281
chr12	96284650	rs6538681	A	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,28:0.28:101
chr12	96288860	rs10859974	T	C	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=0.018;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:64,38:0.37:102
chr12	96292280	rs149620412	G	GAAAC	1670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=5.917;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.726;QD=8.31;ReadPosRankSum=-1.089;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:150,51:0.25:201
chr12	96329113	.	G	A	768.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr12	96330311	rs56667838	GA	G	129.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	96337183	rs7955450	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	96348536	rs11108351	C	A	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr12	96354455	rs2043608	G	C	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	96355949	rs3751266	T	C	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	96356048	rs112878109	A	AAC	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	96356060	rs3751265	G	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	96356280	rs5800239	A	AC	5614.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	96359301	rs4762657	T	G	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr12	96359426	rs4762658	C	G	10274.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr12	96360350	rs1025606	A	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	96361514	rs56676973	G	GT,GTT	763.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=10.564;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.395;QD=17.36;ReadPosRankSum=-0.511;SOR=1.872;set=HC	GT:AD:AF:DP	1/2:4,22,18:0.50,0.41:44
chr12	96367900	rs2230885	G	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr12	96371670	rs3764038	G	A	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr12	96371894	rs4762659	C	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	96372026	rs11454735	A	AT	173.06	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr12	96374554	rs6538693	G	A	8233.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	96374563	rs6538694	T	C	8534.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	96374614	rs7297245	C	T	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	96374672	rs6538695	T	C	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	96374683	rs6538696	C	T	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	96374750	rs2270318	G	A	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	96379663	.	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-2.234;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:121,24:0.17:145
chr12	96386646	rs111580568	G	GCCCTCCCT	1003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=45.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=0.761;SOR=5.640;set=HC	GT:AD:AF:DP	0/1:99,32:0.24:131
chr12	96387621	rs2302629	A	G	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	96387829	rs17677007	A	G	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:88,158:0.64:246
chr12	96389322	rs61937879	G	A	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:66,103:0.61:169
chr12	96397850	rs11374431	T	TA	704.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr12	96399986	rs5020450	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr12	96414451	rs17677715	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	96415842	rs2540493	A	C	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:78,114:0.59:192
chr12	96617304	rs2302902	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.090;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr12	96653501	rs4762144	C	T	2393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=-0.472;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,105:0.72:145
chr12	96676188	rs71460338	T	G	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:85,150:0.64:235
chr12	96688732	rs11835965	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr12	96694162	rs10777781	G	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	96704740	rs35036804	G	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:57,80:0.58:137
chr12	96704958	.	T	TA	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.380;QD=3.46;ReadPosRankSum=-0.162;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:65,31:0.32:96
chr12	96704979	rs3759366	C	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr12	96718008	rs35383509	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr12	96883245	rs3825265	G	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	96894453	rs7959697	A	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr12	96894774	rs10860047	C	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr12	96900801	rs61730867	G	T	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:259,124:0.32:383
chr12	96912598	rs11108564	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	96927498	rs2160500	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-0.239;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	96927778	rs5800251	GT	G	462.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr12	96927817	rs2111146	C	T	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,59:0.61:97
chr12	96927972	rs2160501	A	G	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,62:0.69:90
chr12	96927986	rs2160502	A	T	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.639;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chr12	96929200	rs11453356	A	AT	763.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr12	96958227	rs3803090	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr12	96970658	.	C	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.816;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:59,9:0.13:68
chr12	96986190	rs2052293	G	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.000;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr12	96988037	rs815896	C	G	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	96992494	rs815890	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	97020673	rs10507074	T	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.36;ReadPosRankSum=2.832;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:7,31:0.82:38
chr12	97023937	rs9919717	A	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr12	97023991	rs1362949	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr12	97024016	rs35205059	TG	T	367.19	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr12	97045672	rs11314540	GT	G	100.75	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	97051632	rs10710617	AT	A	54.74	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	97073624	.	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DP=211;set=Intersection	GT:AD:AF:DP	0/1:140,71:0.34:211
chr12	97079041	rs7974435	C	G	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=7.939;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-1.415;QD=17.72;ReadPosRankSum=-1.337;SOR=0.080;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr12	97079041	.	CCG	GCA	501	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=2;MGOF=10;MMLQ=24;MQ=60.22;NF=4;NR=22;PP=501;QD=21.3256874947;SC=GGAAGGATCCCCGTACTAGCT;SbPval=0.28;Source=Platypus;TC=39;TCF=4;TCR=35;TR=26;WE=97079051;WS=97079031;set=Platypus	GT:AD:AF:DP	0/1:13,26:0.67:39
chr12	97079043	rs7974634	G	A	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=40.24;SOR=3.865;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	97085107	rs4762319	A	C	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.54;SOR=1.988;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	97098415	rs10860069	C	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	97098549	rs11108643	T	C	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	97102578	rs7968231	G	A	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	97102700	rs10581594	TTATA	T	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr12	97114231	rs10860073	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr12	97136218	rs7978894	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr12	97136239	rs1990828	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	97147503	rs1420649	G	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:119,54:0.31:173
chr12	97151077	rs1019336	C	G	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	97158126	rs10860094	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	97158772	rs58414715	C	CT	77.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr12	97180430	rs11108696	C	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=1.179;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr12	97211399	rs369211137	CATGTT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-2.073;QD=8.73;ReadPosRankSum=-0.913;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr12	97211407	.	C	CTAA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-2.073;QD=8.55;ReadPosRankSum=-1.476;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr12	97211410	rs142077887	G	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-2.168;QD=8.57;ReadPosRankSum=-0.792;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr12	97211528	rs970620	A	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=0.989;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr12	97254620	rs1420653	G	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	97303682	rs34499067	TA	T	1446.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:27,87:0.76:114
chr12	97303693	rs77544329	A	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.531;QD=2.13;ReadPosRankSum=0.013;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:113,27:0.19:140
chr12	97311376	rs11333833	CT	C	729.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.917;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:6,48:0.89:54
chr12	97314001	rs11830756	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	97339388	rs249589	G	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	97345955	rs2304697	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	97639049	rs1012314	T	C	7913.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	97639144	rs1012315	A	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:260,107:0.29:367
chr12	97639191	rs74823066	G	A	4403.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:74,186:0.72:260
chr12	98332667	rs1349300	C	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	98332704	rs1349299	C	G	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	98332904	rs3072891	TCA	T	3312.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	98389341	rs1477006	A	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	98880901	rs36109874	TA	T	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=5.288;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=1.707;QD=9.61;ReadPosRankSum=0.339;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:11,36:0.77:47
chr12	98881064	rs34027469	TA	T	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=1.777;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	98896502	rs3825263	G	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	98897361	rs56397627	C	G	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	98897364	rs56118269	C	T	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	98985056	rs934930	T	C	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	99020688	rs148210292	TGACA	T	1154.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	99056125	rs10745833	T	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	99116919	rs11109582	A	G	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	99129497	rs10860361	G	A	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	99129541	rs7300187	G	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	99166805	rs2287574	G	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	99175091	.	AAC	A	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.366;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:106,27:0.20:133
chr12	99175840	rs7954506	A	G	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	99447139	rs3794799	C	A	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	99478626	rs3803094	C	T	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	99478889	rs7970088	G	A	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	99639930	rs923724	G	C	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	99640428	rs3751323	T	C	5892.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	99640557	rs1552759	T	C	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	100219207	rs7138513	A	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:39,62:0.61:101
chr12	100478156	rs66668869	TCACACACACA	T	821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.43;ReadPosRankSum=2.287;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr12	100635627	.	G	GA	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=3.521;QD=1.48;ReadPosRankSum=0.079;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr12	100709313	rs7968030	T	A	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=2.808;SOR=1.527;set=HC	GT:AD:AF:DP	0/1:28,39:0.58:67
chr12	100795794	rs11110366	A	G	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.12;ReadPosRankSum=-0.320;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	100806411	rs138819500	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=13.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.251;SOR=3.634;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	100806503	rs11568536	C	T	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:67,105:0.61:172
chr12	100811727	rs11110371	C	T	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:33,76:0.70:109
chr12	100811749	rs61941805	A	C	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:43,110:0.72:153
chr12	100812066	.	C	CT	303.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr12	100813487	rs7967828	A	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr12	100813976	rs11568537	A	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr12	100928919	rs118158510	A	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr12	100930213	rs17030285	C	G	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	101012490	rs7961640	G	A	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	101017445	rs1469385	T	C	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	101018014	rs1045602	T	C	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:344,175:0.34:519
chr12	101133494	rs17478305	C	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	101133748	rs73145643	A	C	15926.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr12	101133912	rs4764751	G	A	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	101433990	rs665071	A	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr12	101437520	rs79284486	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr12	101473272	rs651784	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr12	101477522	.	A	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-3.280;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:203,39:0.16:242
chr12	101491375	rs1842888	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr12	101510371	rs349661	T	G	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	101520648	rs3832861	C	CTG	1507.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,45:0.30:148
chr12	101550961	rs150497001	A	AAC	425.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr12	101551854	rs10860693	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	101552075	rs2671444	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr12	101584223	rs12313149	A	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,46:0.34:136
chr12	101683929	rs703715	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	101750814	rs10082778	T	A	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	101777489	rs10860719	G	A	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	101777610	rs67382207	TTA	T	523.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=34.92;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	101779964	rs4764794	T	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	101795009	rs17500203	A	C	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	101796965	rs12370450	G	A	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr12	101870804	rs7979430	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	101873596	rs10683589	C	CT	211.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.618;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:23,21:0.48:44
chr12	101876864	rs72412045	G	GTTT	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.037;QD=16.04;ReadPosRankSum=1.234;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	101988774	rs1697477	G	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:81,53:0.40:134
chr12	102008087	.	GGT	G	94	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=2;MGOF=17;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=94;QD=34.3333333333;SC=GATGCAGTAGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=11;TCF=9;TCR=2;TR=3;WE=102008096;WS=102008077;set=Platypus	GT:AD:AF:DP	1/0:8,3:0.27:11
chr12	102008103	rs825079	T	A	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr12	102020488	rs825073	A	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	102020810	rs825074	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr12	102025926	rs61935677	C	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:146,62:0.30:208
chr12	102036305	rs2293468	C	T	2030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.400;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:98,97:0.50:195
chr12	102041757	rs17031746	A	G	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:50,92:0.65:142
chr12	102041967	rs3834936	C	CA	1608.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	102042985	rs3215353	A	AT	763.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr12	102043301	rs2272336	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr12	102044912	rs825046	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr12	102045163	rs3817552	C	G	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,82:0.61:135
chr12	102045231	rs10860759	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr12	102046303	rs145871881	C	CCT	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-1.591;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr12	102046394	rs1997205	C	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:83,54:0.39:137
chr12	102046595	rs1997204	T	C	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	102046874	rs3835190	AC	A	1028.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:67,35:0.34:102
chr12	102053675	rs17511481	C	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:71,54:0.43:125
chr12	102053753	rs12372616	C	G	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.708;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.93;ReadPosRankSum=-0.418;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr12	102053753	.	CAT	GAC	681	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=1;HapScore=2;MGOF=15;MMLQ=28;MQ=60.0;NF=1;NR=13;PP=681;QD=52.4619910616;SC=GAGGACTTATCATTGGAGAAA;SbPval=0.61;Source=Platypus;TC=30;TCF=2;TCR=28;TR=14;WE=102053763;WS=102053743;set=Platypus	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	102053755	rs12367753	T	C	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.615;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.93;ReadPosRankSum=-0.222;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	102057166	rs2254631	T	C	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.366;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr12	102060623	rs372941811	T	C	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr12	102060664	.	CACAT	C	1493	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=2;MGOF=34;MMLQ=25;MQ=61.33;NF=0;NR=22;PP=1493;QD=68.9090909091;SC=GAATACTCATCACATACATAC;SbPval=1.0;Source=Platypus;TC=30;TCF=0;TCR=30;TR=22;WE=102060688;WS=102060654;set=Platypus	GT:AD:AF:DP	1/0:8,22:0.73:30
chr12	102061725	.	C	CT	612	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=9;HapScore=2;MGOF=58;MMLQ=26;MQ=60.0;NF=1;NR=20;PP=612;QD=29.8095238095;SC=ACATGGTTCACTTTTTTTTTC;SbPval=0.88;Source=Platypus;TC=60;TCF=6;TCR=54;TR=21;WE=102061733;WS=102061715;set=Platypus	GT:AD:AF:DP	0/1:39,21:0.35:60
chr12	102061793	rs147564199	GTTAATGCT	G	954.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	102063706	.	G	GA	30	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=0.9999;HP=11;HapScore=4;MGOF=68;MMLQ=29;MQ=55.42;NF=2;NR=0;PP=30;QD=19.5;SC=GAGACTCTCTGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=5;TCF=4;TCR=1;TR=2;WE=102063726;WS=102063696;set=Platypus	GT:AD:AF:DP	1/1:3,2:0.40:5
chr12	102063901	rs368053290	CCA	C	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.095;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	102064118	rs7139095	T	C	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr12	102069077	rs764291	A	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:109,69:0.39:178
chr12	102069264	rs1263786	G	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	102071290	rs1263784	T	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr12	102074442	rs2303631	A	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr12	102078094	rs2303629	G	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-2.543;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:91,54:0.37:145
chr12	102079418	rs2764	G	A	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	102110335	rs2041150	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	102110692	rs77692348	ATT	A	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.39;ReadPosRankSum=-1.133;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	102111173	rs1544921	G	C	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:57,109:0.66:166
chr12	102116792	rs3764973	G	A	393.90	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr12	102117149	rs11110979	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr12	102117589	rs11082	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	102120289	rs7965541	C	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr12	102120364	rs222508	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	102131090	rs11306325	TA	T	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=0.585;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr12	102133335	rs118034536	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr12	102147142	rs79493678	G	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:45,92:0.67:137
chr12	102154900	rs759935	A	G	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:43,82:0.66:125
chr12	102158763	rs10778148	T	C	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:107,164:0.61:271
chr12	102182181	rs2108694	G	A	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr12	102224491	rs76300806	AGCC	A	1579.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr12	102295218	rs7295569	TC	CT	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	0/1:61,99:0.62:160
chr12	102300977	rs34812976	C	CAA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.07;ReadPosRankSum=-1.668;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	102308095	rs7955730	C	T	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:118,192:0.62:310
chr12	102433811	rs4237982	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr12	102468734	.	TA	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.669;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:73,17:0.19:90
chr12	102471004	rs116868345	C	T	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:126,60:0.32:186
chr12	102541976	rs76358859	AT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.136;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr12	103234479	rs798709	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	103237468	rs772897	G	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	103237958	rs10860930	AA	CG	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr12	103240630	rs1522306	C	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr12	103248924	rs1126758	C	T	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	103249164	rs2251905	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:56,23:0.29:79
chr12	103260608	rs2247836	T	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr12	103298517	rs1522307	A	G	7315.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr12	103306550	rs17842947	A	G	5381.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:138,235:0.63:373
chr12	103307583	rs3805122	A	G	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:198,92:0.32:290
chr12	103310715	rs1522295	T	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	103310787	rs1522296	G	A	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	103310979	rs2280615	T	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr12	103352171	rs369257660	CGCA	C	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.248;QD=3.64;ReadPosRankSum=0.044;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:94,19:0.17:113
chr12	103558605	rs17453782	G	A	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:180,77:0.30:257
chr12	103561799	rs1401988	C	T	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	103670917	rs12311525	A	G	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:130,158:0.55:288
chr12	103699685	rs7488867	C	T	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:42,79:0.65:121
chr12	103762084	rs138043759	G	GTC	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=0.917;QD=15.52;ReadPosRankSum=0.719;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	103872172	rs10778257	T	G	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	103988385	rs17034187	A	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr12	104014402	rs140346177	AAC	AACAC,A	310.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	0/1:0.53:19
chr12	104015999	rs703612	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.46;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	104025219	rs10668571	T	TA	303.86	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr12	104032074	rs1582876	A	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr12	104042736	rs697199	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr12	104044241	rs12829198	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=5.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=3.245;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:72,27:0.27:99
chr12	104046601	rs1032450	A	G	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr12	104048592	rs831425	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.024;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr12	104049190	rs147266989	T	A	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:65,124:0.66:189
chr12	104053955	rs11111705	A	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr12	104067812	rs11614418	C	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:131,72:0.35:203
chr12	104069836	rs72387257	C	CTT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.637;QD=2.09;ReadPosRankSum=0.908;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr12	104086736	rs11440653	A	AT	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.090;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:113,39:0.26:152
chr12	104092996	rs697210	T	C	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.569;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:118,60:0.34:178
chr12	104099544	rs11111718	C	A	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:89,155:0.64:244
chr12	104100617	rs697212	C	T	9954.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr12	104111687	rs703653	C	A	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	104124061	rs4981042	A	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	104131352	rs368787956	TTCTC	T	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.87;ReadPosRankSum=-0.642;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr12	104133305	.	C	CTG	94.73	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	104133350	.	T	C	58	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=2;MGOF=83;MMLQ=20;MQ=56.85;NF=0;NR=7;PP=58;QD=13.2530303639;SC=TGTGTGTGTGTGCCCGTGCAC;SbPval=1.0;Source=Platypus;TC=17;TCF=1;TCR=16;TR=7;WE=104133358;WS=104133340;set=Platypus	GT:AD:AF:DP	1/0:10,7:0.41:17
chr12	104139034	rs7306642	C	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.497;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:65,22:0.25:87
chr12	104140517	rs2056128	A	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	104147207	rs3751198	A	G	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	104149022	rs11111748	G	A	11198.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:1,414:1.00:415
chr12	104149251	rs7296626	C	T	10045.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr12	104149520	rs7313163	T	G	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,68:0.60:113
chr12	104152856	rs3817303	G	T	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.102;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:114,39:0.25:153
chr12	104153004	rs2271637	C	G	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:145,103:0.42:248
chr12	104159667	rs11111755	G	A	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr12	104159716	rs10861094	C	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr12	104171941	rs141837728	CTT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=2.131;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr12	104171948	.	T	TAAA	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=2.018;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:32,22:0.41:54
chr12	104174192	rs1866292	C	T	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:129,73:0.36:202
chr12	104179145	.	G	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.958;ClippingRankSum=0.000;DP=393;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.222;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:327,66:0.17:393
chr12	104179271	rs11111771	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:196,111:0.36:307
chr12	104179529	rs201632707	TAAAAAAAAAAAAA	T,TA	2584.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;QD=37.46;SOR=1.238;set=HC	GT:AD:AF:DP	1/2:0,32,37:0.46,0.54:69
chr12	104181420	rs4964823	A	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	104182458	rs2888792	T	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr12	104186946	rs1866295	G	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:136,80:0.37:216
chr12	104187092	rs1866296	G	A	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:353,154:0.30:507
chr12	104187440	rs11111781	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr12	104190523	rs12425205	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	104190854	rs73192052	CA	TG	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr12	104237512	rs1370784	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr12	104237882	rs2576974	G	A	8280.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	104254753	rs11111816	G	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	104254932	rs11111817	G	A	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	104260208	rs11612613	C	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.410;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:105,45:0.30:150
chr12	104309383	rs9788014	C	T	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:132,61:0.32:193
chr12	104309428	rs7295489	G	C	4082.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:90,177:0.66:267
chr12	104309712	rs2583273	C	T	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=1.306;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:170,67:0.28:237
chr12	104324148	rs2722187	G	A	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	104324182	rs2070908	C	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.654;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr12	104325459	rs17034931	G	C	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:118,203:0.63:321
chr12	104325649	rs2722188	T	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	104327979	rs6615	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:169,73:0.30:242
chr12	104335750	rs58392270	TAA	T	7173.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	104336646	.	G	T	3558.77	.	AC=1;AF=0.500;AN=2;DP=247;set=Intersection	GT:AD:AF:DP	0/1:93,154:0.62:247
chr12	104337667	rs1882019	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:105,59:0.36:164
chr12	104341187	rs201427769	TGAA	T	3031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.474;QD=11.06;ReadPosRankSum=0.233;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:187,87:0.32:274
chr12	104359779	rs372823872	C	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.463;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.238;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:63,11:0.15:74
chr12	104359931	rs4135039	T	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	104359982	rs4135040	C	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	104366864	rs10627502	A	ATTTTTTTT	1376.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.23;ReadPosRankSum=-0.921;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr12	104370850	rs3829300	A	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:116,49:0.30:165
chr12	104373600	rs3751209	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr12	104373728	rs151041931	G	GA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=11.116;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-6.984;QD=0.93;ReadPosRankSum=1.690;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr12	104378762	rs35589874	C	CAT	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr12	104378826	rs4135122	C	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	104380734	rs2888805	G	A	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.130;QD=6.66;ReadPosRankSum=-0.134;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:57,35:0.38:92
chr12	104387138	rs79806135	G	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr12	104391473	rs4964435	G	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr12	104393304	rs3215372	AC	A	242.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	104408955	rs73177961	T	C	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:32,69:0.68:101
chr12	104413436	rs11553765	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr12	104459811	rs34011860	A	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr12	104459905	rs35879815	T	G	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:44,98:0.69:142
chr12	104461937	rs6539123	C	T	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:45,99:0.69:144
chr12	104476255	rs78717299	G	C	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:125,75:0.38:200
chr12	104482010	rs3763999	T	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr12	104489120	rs2272477	T	C	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,63:0.53:118
chr12	104514034	rs141075035	T	C	166.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr12	104516968	rs141275623	G	GA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.164;QD=7.15;ReadPosRankSum=0.896;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr12	104520054	rs12426862	T	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.092;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	104529349	rs4257050	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	104606545	rs57718153	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr12	104618454	rs6539128	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr12	104645363	rs7960443	G	A	4414.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:83,196:0.70:279
chr12	104645405	rs7975161	T	C	3355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=1.717;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:60,154:0.72:214
chr12	104703836	rs7134193	A	G	4607.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:117,198:0.63:315
chr12	104703957	rs35882028	T	A	1222.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.081;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.79;ReadPosRankSum=0.373;SOR=2.073;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr12	104703957	.	TCT	AGA	2827	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=28;MQ=60.0;NF=3;NR=19;PP=2827;QD=20;SC=GGAGTCTCACTCTGTGAGACT;SbPval=0.71;Source=Platypus;TC=36;TCF=6;TCR=30;TR=22;WE=104703980;WS=104703947;set=Platypus	GT:AD:AF:DP	1/0:14,22:0.61:36
chr12	104703958	rs34794131	C	G	1222.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.11;ReadPosRankSum=0.098;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:12,30:0.71:42
chr12	104703959	rs34873076	T	A	1222.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.596;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.57;ReadPosRankSum=-0.182;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr12	104703965	rs66665385	ACTCCCAGG	A	1147.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr12	104707180	rs6539137	A	T	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr12	104709559	rs4964287	C	T	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:69,139:0.67:208
chr12	104714847	.	CT	C	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.050;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:133,61:0.31:194
chr12	104718959	rs10861201	C	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=0.886;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr12	104741958	rs11112003	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr12	104985271	rs77877813	G	GTCT	145.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	104985289	rs1615960	A	G	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	104985407	rs11112118	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-0.899;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr12	104985443	rs61938575	G	A	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=6.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.086;SOR=1.390;set=HC	GT:AD:AF:DP	0/1:75,35:0.32:110
chr12	104985540	rs11112119	G	T	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-1.153;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:120,52:0.30:172
chr12	104985580	rs11112120	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:98,37:0.27:135
chr12	104985655	rs313323	C	T	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	104995800	rs5800627	A	AT	1863.50	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:21,110:0.84:131
chr12	105260365	rs34984157	TA	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.277;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr12	105431835	rs10861315	T	G	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:69,85:0.55:154
chr12	105432040	rs11112328	A	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.262;MLEAC=1;MLEAF=0.500;MQ=61.85;MQRankSum=-0.520;QD=2.45;ReadPosRankSum=2.032;SOR=1.730;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr12	105432053	.	CACAA	C	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=63.51;MQRankSum=-0.919;QD=2.99;ReadPosRankSum=2.504;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr12	105432057	.	AACACAC	A	212.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.641;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.85;MQRankSum=-0.502;QD=8.18;ReadPosRankSum=-0.719;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	105432069	rs201189631	C	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.51;MQRankSum=-0.187;QD=10.44;ReadPosRankSum=1.972;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	105433463	rs4964120	C	T	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr12	105433523	rs4964317	T	A	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:93,193:0.67:286
chr12	105433607	rs4964318	G	A	3700.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:68,157:0.70:225
chr12	105433702	rs7315784	A	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr12	105434467	rs11112330	C	T	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:83,152:0.65:235
chr12	105434533	rs10861316	C	A	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:93,129:0.58:222
chr12	105440421	rs10861324	T	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr12	105443966	rs7485673	T	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr12	105445798	rs61938827	C	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr12	105446092	rs140372840	AT	A	1330.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,56:0.63:89
chr12	105446552	rs56188643	T	C	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:67,125:0.65:192
chr12	105446719	rs56118650	G	T	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:59,120:0.67:179
chr12	105454605	rs10674036	G	GAAAA	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=0.067;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr12	105455651	rs6539183	A	G	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr12	105477951	rs11112362	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr12	105478327	rs7303961	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	105504764	rs1196839	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr12	105504787	rs1196838	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr12	105509160	rs1196801	G	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	105514480	rs1196837	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	105514786	rs1196836	G	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr12	105527385	rs1211276	G	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr12	105534025	rs1196808	G	A	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:21,73:0.78:94
chr12	105536430	rs5800652	C	CTA	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.28;ReadPosRankSum=1.860;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	105538270	rs370837338	CT	C	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.552;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:45,40:0.47:85
chr12	105538417	rs148267591	AGTT	A	736.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.54;ReadPosRankSum=0.739;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr12	105540322	rs199922129	A	AT	1044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.778;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.663;QD=11.61;ReadPosRankSum=-0.447;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:27,63:0.70:90
chr12	105543326	rs1196802	T	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr12	105546172	rs1663564	G	A	7688.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	105568122	rs935241	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:47,85:0.64:132
chr12	105568176	rs935240	G	A	2091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=0.573;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:60,99:0.62:159
chr12	105582245	rs1196852	A	G	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:113,159:0.58:272
chr12	105629865	rs1196785	C	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.389;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	105760229	rs17248053	C	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	105789562	rs1534253	C	T	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr12	106464785	rs4964437	G	C	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr12	106500160	rs11338561	TA	T	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.251;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:69,25:0.27:94
chr12	106532072	rs1215597	C	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr12	106706035	rs57408416	AT	A	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=1.950;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr12	106717517	rs71843294	TA	T	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=41.07;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	106717522	.	T	A	1036.77	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=41.47;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	106717525	rs72143923	TA	T	1027.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=41.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	106729425	rs17218950	G	A	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr12	106751563	rs17219334	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr12	106820957	rs202125845	CT	C	1013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.310;QD=7.68;ReadPosRankSum=-0.120;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:50,82:0.62:132
chr12	106838340	rs10861607	T	C	5143.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:132,229:0.63:361
chr12	106890059	rs721438	C	T	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.038;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr12	106890135	rs2288270	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	106890151	rs2288269	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	106893863	rs7137638	G	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr12	106893930	rs7137444	A	T	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:63,90:0.59:153
chr12	106903321	rs13561	T	C	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-1.355;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:47,91:0.66:138
chr12	107002558	rs55993073	CT	C	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.391;QD=3.63;ReadPosRankSum=1.498;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:96,62:0.39:158
chr12	107002825	rs11113054	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr12	107033314	rs12099865	T	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr12	107078448	rs10467029	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr12	107078562	rs5800715	A	AAAG	1767.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr12	107080617	rs56287989	CTTT	C	590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=1.215;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:65,22:0.25:87
chr12	107080638	rs55658229	TCC	T	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=2.882;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:87,24:0.22:111
chr12	107083031	rs9804754	G	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:157,88:0.36:245
chr12	107090201	rs10778502	T	C	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=0.140;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:128,68:0.35:196
chr12	107113769	rs17038732	G	A	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=1.037;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:142,67:0.32:209
chr12	107114427	rs4625579	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.520;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr12	107141265	rs61743416	G	A	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.501;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:87,37:0.30:124
chr12	107144328	rs12424114	A	G	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.561;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=2.816;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:73,40:0.35:113
chr12	107395106	rs8192440	A	G	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:165,93:0.36:258
chr12	107398862	.	TA	T	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=2.709;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:115,42:0.27:157
chr12	107712880	rs10082935	C	T	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	107713511	rs961498	G	C	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr12	107713696	rs111260184	G	A	5428.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	107714310	rs11383016	T	TC	1818.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	107914123	rs7133143	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	107914141	rs1861586	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	107937768	rs1558781	G	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:114,57:0.33:171
chr12	108003911	rs4964599	T	C	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	108086697	rs2287216	T	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.639;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr12	108090518	rs2287214	A	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	108127965	rs17306603	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr12	108136172	rs2302734	A	G	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.699;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:139,62:0.31:201
chr12	108140032	rs3803120	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:86,42:0.33:128
chr12	108150758	rs1814335	C	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.902;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr12	108154199	rs2302733	A	G	2434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=7.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-0.637;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:219,140:0.39:359
chr12	108600237	rs1106752	A	G	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.43;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	108686008	rs1057401	C	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:179,100:0.36:279
chr12	108687449	rs59925321	GA	G	619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.161;QD=5.79;ReadPosRankSum=0.801;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:41,66:0.62:107
chr12	108912178	rs35664142	G	A	8266.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:187,372:0.67:559
chr12	108913377	rs5800830	GT	G	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	108917520	rs34982944	G	GA,GAA	965.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=22.99;ReadPosRankSum=-1.239;SOR=0.729;set=HC	GT:AD:AF:DP	1/2:1,21,20:0.50,0.48:42
chr12	108918146	rs2303633	C	T	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	108918330	rs2303632	G	T	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-1.375;QD=15.05;ReadPosRankSum=-0.140;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:18,36:0.67:54
chr12	108919166	rs17040655	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	108919390	rs7963063	T	C	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:52,79:0.60:131
chr12	108923950	rs1549096	A	G	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr12	108924904	rs2287549	C	T	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:89,139:0.61:228
chr12	108932053	rs2287551	C	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	108932916	rs7133076	C	T	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	108936484	rs888555	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.267;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.517;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	108936516	rs888556	T	G	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	108936519	rs888557	C	T	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	108943028	rs2052423	G	A	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	108954502	rs1160332	G	A	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	108954823	rs1063936	C	T	15211.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr12	108954862	rs2072579	G	C	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:367,162:0.31:529
chr12	108956357	rs2287554	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	108956417	rs10778647	TT	GG	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	108956433	rs2287555	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr12	108956526	rs60547936	A	AG	4683.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	108956610	rs2287556	C	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	108960906	rs10861945	G	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	108961293	rs888546	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	108961354	rs888547	T	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	108961383	rs888548	A	G	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	109025432	rs8179115	T	C	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.627;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=9.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=1.821;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:34,46:0.57:80
chr12	109095137	rs3741782	A	G	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:59,116:0.66:175
chr12	109183144	rs60314156	C	CT	536.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr12	109205189	rs11114060	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr12	109217007	rs34849596	G	GT	1536.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr12	109221013	rs10861970	C	A	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr12	109270506	rs7136681	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:97,48:0.33:145
chr12	109316384	rs56314725	A	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr12	109331162	rs3918305	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:107,99:0.48:206
chr12	109338835	rs36131538	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr12	109339023	rs36191519	C	T	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr12	109354632	rs36181716	T	C	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:30,77:0.72:107
chr12	109371381	rs149284306	C	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:46,77:0.63:123
chr12	109371442	rs36182807	G	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr12	109458559	rs138861157	A	ACC	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr12	109490401	rs2304266	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr12	109490601	rs2304267	C	T	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr12	109510086	rs111762860	G	GT	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.237;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:145,40:0.22:185
chr12	109511144	rs7967182	T	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr12	109511256	rs7967322	T	C	2719.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:76,124:0.62:200
chr12	109530278	rs145676752	G	GCA	2958.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:113,141:0.56:254
chr12	109536559	rs3219211	A	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr12	109540613	rs3219235	G	GT	1350.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,66:0.64:103
chr12	109541171	rs2569987	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr12	109577735	rs2878960	C	T	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:248,134:0.35:382
chr12	109577952	rs4766494	T	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr12	109605730	rs4766516	C	T	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:86,152:0.64:238
chr12	109605898	rs34285	C	T	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	109609528	rs12821387	T	C	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:108,104:0.49:212
chr12	109617865	rs11065772	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	109623516	rs2300455	G	A	6333.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:167,295:0.64:462
chr12	109625976	.	CTCCTTCCT	C,CTCCT	1210.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;QD=40.36;SOR=6.869;set=HC	GT:AD:AF:DP	1/2:0,11,19:0.37,0.63:30
chr12	109629457	rs7135947	C	T	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:141,82:0.37:223
chr12	109635031	rs2268393	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,47:0.38:124
chr12	109635076	rs2268392	T	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr12	109637188	rs7299171	G	C	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:97,66:0.40:163
chr12	109644447	rs12818490	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	109670468	rs3742027	T	C	12761.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr12	109670657	rs3742026	G	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	109672951	rs7138373	T	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	109675029	rs2241220	T	C	7517.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr12	109683575	rs10744772	A	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	109685330	rs4766587	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.156;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=-1.638;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chr12	109685545	rs2284689	A	G	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	109691991	rs2075259	A	G	12023.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr12	109693982	rs3742023	C	T	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.574;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:200,69:0.26:269
chr12	109694230	rs10849967	T	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr12	109695891	rs11066004	A	G	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr12	109696838	rs2075260	G	A	15813.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr12	109697796	rs2075261	A	G	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	109701959	rs35795929	CA	C	1544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-1.333;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:52,114:0.69:166
chr12	109704177	rs2075262	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:83,38:0.31:121
chr12	109717697	rs10774641	A	G	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:208,88:0.30:296
chr12	109723077	rs10774643	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=2.696;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr12	109723079	rs10774644	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=2.612;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr12	109826634	rs11611277	C	A	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:80,120:0.60:200
chr12	109831344	.	T	TCATCCAACCATTCATCCATCCATCCATC	2586	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=24;MQ=65.83;NF=2;NR=29;PP=2586;QD=20;SC=GTCCATCCATTCATCCATCCA;SbPval=0.4;Source=Platypus;TC=67;TCF=3;TCR=64;TR=31;WE=109831364;WS=109831333;set=Platypus	GT:AD:AF:DP	1/0:36,31:0.46:67
chr12	109831348	.	C	CCAACCATT	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=16.883;MLEAC=1;MLEAF=0.500;MQ=65.84;MQRankSum=5.922;QD=13.10;ReadPosRankSum=1.833;SOR=3.300;set=HC	GT:AD:AF:DP	0/1:37,23:0.38:60
chr12	109831356	.	C	T	1039	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=26;MQ=61.53;NF=1;NR=13;PP=1039;QD=76.6979437534;SC=ATCCATCCATCCATCCATCCA;SbPval=0.97;Source=Platypus;TC=48;TCF=11;TCR=37;TR=14;WE=109831364;WS=109831333;set=Platypus	GT:AD:AF:DP	1/0:34,14:0.29:48
chr12	109831356	.	C	CCATCCATCCATCCATCCATT	748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=16.513;MLEAC=1;MLEAF=0.500;MQ=65.23;MQRankSum=5.806;QD=12.48;ReadPosRankSum=2.470;SOR=3.215;set=HC	GT:AD:AF:DP	0/1:37,23:0.38:60
chr12	109835590	rs11611358	A	G	5503.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:120,240:0.67:360
chr12	109843594	rs9888353	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr12	109844432	rs11066505	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	109844702	rs12425103	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr12	109845778	rs75978659	C	CATT	5994.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:72,151:0.68:223
chr12	109848000	rs7967632	C	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	109848567	rs7315991	T	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr12	109849535	rs2196612	A	G	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.509;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.85;ReadPosRankSum=0.316;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:16,39:0.71:55
chr12	109849540	rs7316486	A	G	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=5.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.75;ReadPosRankSum=0.598;SOR=1.625;set=HC	GT:AD:AF:DP	0/1:17,41:0.71:58
chr12	109849552	rs5800859	C	CCT	1854.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr12	109853306	rs4766598	A	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr12	109853462	rs4766471	G	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr12	109858918	rs367698876	AT	A	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.788;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr12	109859032	rs5800861	G	GC	228.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	109863721	rs67083809	TTC	T	2125.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr12	109865121	rs34644066	CA	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=1.872;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr12	109874230	rs2075432	A	G	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:85,134:0.61:219
chr12	109883254	rs3742020	T	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr12	109883374	rs3825393	T	C	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:58,112:0.66:170
chr12	109883577	rs7969719	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	109889704	rs11282253	A	AATCAGG	1919.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;MQ=60.27;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr12	109893797	rs2302707	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr12	109894028	rs2302706	A	G	7050.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:200,316:0.61:516
chr12	109895636	rs4766605	C	A	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr12	109895958	rs11609019	G	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr12	109896002	rs12822891	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	109907303	rs7969313	A	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr12	109907670	rs12819658	A	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr12	109926207	rs34306729	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	109928013	rs7976796	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr12	109935894	rs2270361	G	C	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr12	109936211	rs56244055	G	A	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:60,101:0.63:161
chr12	109937534	rs7298565	G	A	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:64,108:0.63:172
chr12	109945203	rs11611012	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	109949134	rs3742018	C	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,56:0.67:84
chr12	109959389	rs67731731	TA	T	2851.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:71,116:0.62:187
chr12	109964102	rs7139198	C	T	4849.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:102,212:0.68:314
chr12	109971215	rs4766608	C	T	3942.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:108,173:0.62:281
chr12	109994870	rs9593	A	T	1901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=-0.533;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:18,81:0.82:99
chr12	109995097	rs888192	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	109999005	rs11610545	G	A	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:102,151:0.60:253
chr12	109999037	rs2287181	G	A	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:63,126:0.67:189
chr12	109999068	rs2287180	G	A	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:59,98:0.62:157
chr12	110002819	rs10850380	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr12	110004804	rs874171	C	T	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.657;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chr12	110004960	rs874170	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr12	110016942	.	AT	A	65	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=20;HapScore=4;MGOF=10;MMLQ=23;MQ=59.93;NF=1;NR=1;PP=65;QD=34.0;SC=TAAGACTACAATTTTTTTTTT;SbPval=0.36;Source=Platypus;TC=15;TCF=3;TCR=12;TR=2;WE=110016960;WS=110016932;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr12	110016947	rs7296044	T	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.85;ReadPosRankSum=2.150;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr12	110016952	rs10774779	T	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.37;ReadPosRankSum=1.518;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr12	110019338	rs2287218	C	T	4801.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:133,227:0.63:360
chr12	110024541	rs2270375	A	G	3626.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:101,171:0.63:272
chr12	110029008	rs35191208	C	T	2943.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:65,126:0.66:191
chr12	110029186	rs2270374	G	A	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:67,133:0.67:200
chr12	110034435	rs36021200	T	TG	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.675;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.139;QD=10.59;ReadPosRankSum=1.586;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr12	110221544	rs116035946	T	C	2589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-2.122;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:386,159:0.29:545
chr12	110221631	rs10774894	G	C	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:189,76:0.29:265
chr12	110231717	rs10850750	C	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=25.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-1.489;SOR=2.623;set=HC	GT:AD:AF:DP	0/1:93,46:0.33:139
chr12	110240838	rs3825394	T	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:121,55:0.31:176
chr12	110252569	rs56092423	C	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-0.915;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:47,29:0.38:76
chr12	110293678	rs3782893	G	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	110295769	rs321725	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr12	110296095	rs4766488	G	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.377;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr12	110340902	rs373497072	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:36,81:0.69:117
chr12	110353172	rs3809300	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr12	110403769	rs138178074	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr12	110418635	rs7960775	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr12	110454085	.	C	CT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.950;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:63,21:0.25:84
chr12	110489238	.	AT	A	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=10.172;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.453;QD=3.00;ReadPosRankSum=-0.689;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr12	110618235	rs16940805	A	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	110780107	rs56243033	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:82,32:0.28:114
chr12	110841269	.	C	T	272.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	110874501	rs200632933	AT	A	1327.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=36.88;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	110874504	rs201277439	T	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=37.13;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	110874516	rs375877607	TAC	T	165.75	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=20.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	110905869	rs7958683	G	A	25572.77	.	AC=2;AF=1.00;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	1/1:0,951:1.00:951
chr12	110933787	.	T	C	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=2.263;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:62,112:0.64:174
chr12	110939421	rs6606687	T	C	13272.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr12	110950775	.	AT	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.656;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr12	110974744	rs73191841	G	C	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:46,75:0.62:121
chr12	110974890	rs10849900	T	C	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.812;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:108,48:0.31:156
chr12	111160513	.	GA	G	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-1.058;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:94,29:0.24:123
chr12	111290871	rs886132	G	C	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-0.986;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:65,38:0.37:103
chr12	111296332	rs4766432	T	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr12	111342558	rs34300256	G	T	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.374;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:101,43:0.30:144
chr12	111345411	rs67912779	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr12	111349074	rs72145780	TG	T	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.06;ReadPosRankSum=-0.084;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	111350999	rs2233260	G	A	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:345,207:0.38:552
chr12	111351029	rs3833910	TC	T	5332.73	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:355,218:0.38:573
chr12	111375170	rs1056618	A	G	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=0.106;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:89,26:0.23:115
chr12	111375172	rs1056620	C	T	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=0.361;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:88,25:0.22:113
chr12	111651949	rs3825398	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=0.304;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr12	111701486	rs56249976	GA	G	1028.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:94,71:0.43:165
chr12	111786082	rs6490073	G	C	11106.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr12	111926224	.	T	TA	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.931;QD=1.16;ReadPosRankSum=2.417;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:88,22:0.20:110
chr12	112036753	rs10560189	GGCT	G	4257.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:6,165:0.96:171
chr12	112036797	rs4098854	C	T	5588.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:15,161:0.91:176
chr12	112036929	rs695872	G	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	112037000	rs695871	G	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	112119387	.	C	CA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.495;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	112148301	.	A	AT	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.883;QD=3.57;ReadPosRankSum=1.415;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chr12	112174755	.	C	G	1321.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:39,62:0.61:101
chr12	112305557	rs145869025	CCCTTCCCTCT	C	1903.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:81,52:0.39:133
chr12	112306512	.	CT	C	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.971;QD=4.06;ReadPosRankSum=-1.009;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr12	112515954	.	GA	G	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.597;QD=2.51;ReadPosRankSum=1.805;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr12	112610714	rs11066188	G	A	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	112638688	rs35054697	CGT	C	2175.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;QD=29.80;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,72:0.99:73
chr12	113313470	rs2891411	C	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:218,101:0.32:319
chr12	113319471	rs886476	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr12	113319600	rs2240194	C	T	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:151,83:0.35:234
chr12	113319778	rs10850088	G	A	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:324,138:0.30:462
chr12	113325460	rs7979186	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr12	113325629	rs4141253	T	C	5171.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:113,231:0.67:344
chr12	113328981	rs3741982	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	113348870	rs1131454	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:122,67:0.35:189
chr12	113357193	rs10774671	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:78,41:0.34:119
chr12	113357209	rs1131476	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:90,45:0.33:135
chr12	113357237	rs1051042	G	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:125,69:0.36:194
chr12	113357442	rs2660	G	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:78,46:0.37:124
chr12	113369644	rs7968145	C	T	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	113369715	rs11352835	TA	T	1600.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:88,51:0.37:139
chr12	113369759	rs7967461	G	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr12	113376320	rs3815178	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr12	113376331	rs1859331	C	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	113376388	rs1859330	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr12	113376452	rs1859329	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr12	113376543	rs3038120	C	CCAAAGGG	1478.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr12	113386950	rs2285932	T	C	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:131,57:0.30:188
chr12	113401199	rs45603631	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:184,94:0.34:278
chr12	113402297	rs11066461	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	113405181	rs1557866	A	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:92,45:0.33:137
chr12	113407584	.	G	T	459.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr12	113425154	rs1293767	C	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.634;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr12	113435293	rs1293756	C	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:138,61:0.31:199
chr12	113435450	rs1293755	A	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:147,71:0.33:218
chr12	113440921	rs2072137	T	C	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:193,85:0.31:278
chr12	113444418	rs929291	T	C	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:131,70:0.35:201
chr12	113448288	rs15895	A	G	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:135,51:0.27:186
chr12	113496313	rs1732785	C	T	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	113515924	rs71445596	CA	C	970.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr12	113530845	rs3217697	C	CAG	3505.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	113530899	rs1628639	A	G	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	113531295	rs1625170	T	C	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.82;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	113531305	rs1674095	A	T	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.36;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	113533050	rs2243397	C	T	28044.77	.	AC=2;AF=1.00;AN=2;DB;DP=1029;set=Intersection	GT:AD:AF:DP	1/1:0,1018:1.00:1018
chr12	113533124	rs2243396	C	T	25191.77	.	AC=2;AF=1.00;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	1/1:1,941:1.00:942
chr12	113539822	rs1674101	A	G	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	113541940	rs1613480	C	T	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	113544874	rs2468355	C	T	12418.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr12	113545393	rs736285	A	G	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	113553408	rs1284878	C	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	113553481	rs1284879	C	T	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	113559531	.	A	AT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.893;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr12	113566050	.	G	GAC	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=8.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.982;SOR=3.076;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr12	113599879	rs112213187	C	T	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:57,107:0.65:164
chr12	113601083	rs138867026	GCAGA	G	966.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:96,31:0.24:127
chr12	113645063	rs187311532	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.192;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=0.586;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr12	113715138	rs140581092	G	T	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:178,183:0.51:361
chr12	113716734	rs144760721	GGT	G	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.821;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:112,16:0.12:128
chr12	113818728	rs34831983	G	A	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,75:0.61:122
chr12	113818795	rs36019885	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr12	113825392	rs12812648	C	T	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,62:0.67:92
chr12	113826535	rs35106464	C	T	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:41,90:0.69:131
chr12	113834864	rs12820484	T	C	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,54:0.61:89
chr12	113863514	rs16942799	A	T	3283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-0.187;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:112,160:0.59:272
chr12	113863573	rs12831704	A	G	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr12	113863963	rs12831817	C	G	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.49;ReadPosRankSum=0.430;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:32,56:0.64:88
chr12	113863969	rs12831825	C	T	2250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=7.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.94;ReadPosRankSum=1.209;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:35,59:0.63:94
chr12	113866441	rs71467912	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	113874497	rs11833132	T	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr12	113909057	rs3803074	A	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr12	114261286	rs930004	T	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	114362621	rs1458713	A	G	11137.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr12	114377899	rs7299217	G	C	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	114384426	rs11066842	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	114793240	rs883079	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr12	114823187	rs2277377	G	T	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	114837219	.	T	TA	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-1.704;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:84,35:0.29:119
chr12	115110251	.	T	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=0.231;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	115110252	rs1532691	T	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=0.231;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	115112507	rs146589414	C	G	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:46,159:0.78:205
chr12	115118997	rs515746	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr12	115801070	rs1920947	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr12	116403920	rs3088260	G	A	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=2.969;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:30,53:0.64:83
chr12	116412921	rs1992068	AT	TC	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	116420538	.	A	G	277.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	116586414	rs10549054	CTA	C	345.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr12	116714113	.	TTG	T	152.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.22;ReadPosRankSum=-0.282;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr12	116714194	rs12422894	A	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr12	116866114	rs11068023	A	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-2.082;QD=0.80;ReadPosRankSum=-2.912;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr12	117013730	rs7303998	G	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:132,68:0.34:200
chr12	117014131	rs55717114	G	GA	2976.73	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:67,140:0.68:207
chr12	117014174	rs139308338	GA	G	1384.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:31,75:0.71:106
chr12	117175478	.	G	GAAGAC	682.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	117186316	rs1532395	A	G	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	117204666	rs113021396	G	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:67,99:0.60:166
chr12	117217141	rs4767452	T	C	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	117286981	rs4767461	C	T	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	117289613	rs903775	G	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=26.64;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	117290601	rs903772	T	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	117349014	rs11068230	C	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	117383320	rs4076700	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	117402755	rs6490101	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	117423264	rs7131746	G	A	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	117465857	rs4529958	T	C	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:44,135:0.75:179
chr12	117593216	rs4767506	C	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	117593387	rs79478437	G	A	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	117593391	rs4767507	A	G	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	117595930	rs2279765	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	117595978	rs2279766	A	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	117603161	rs2270791	T	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	117603561	rs4767511	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	117611934	rs57632063	C	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	117612357	rs3817015	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	117636032	rs11068409	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	117636074	rs112407951	A	AT	1922.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=42.73;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	117636075	rs59514465	A	T	1931.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=42.93;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	117646196	.	CGT	CGTGTGTGTGT,C	159.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=23;set=Intersection	GT:AF:DP	0/1:0.31:16
chr12	117660467	rs816363	C	G	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	117662712	rs2293046	G	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	117665544	rs904658	A	C	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	117669914	rs3741475	G	A	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	117672339	rs1875140	T	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	117672711	rs10588671	CTAT	C	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	117680419	rs9658476	A	C	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.653;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:39,27:0.41:66
chr12	117681353	rs34385734	A	ACCAT	652.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	117685138	rs2291908	T	C	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	117685270	rs1047735	G	A	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	117691727	rs2682822	T	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	117693817	rs11068428	G	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	117696164	rs1093329	G	A	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	117768105	rs111326073	G	GCACA,GCA	2204.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=84;set=Intersection	GT:AF:DP	0/1:0.89:62
chr12	117905636	rs36058871	T	TA	1285.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.643;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=-1.006;SOR=0.310;set=HC	GT:AD:AF:DP	1/1:6,67:0.92:73
chr12	117905716	rs111919379	A	AGGGTTTCTG	1311.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	117905724	rs60346390	G	GT	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.51;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	117907449	rs12304889	T	C	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:72,107:0.60:179
chr12	117907691	rs11068505	C	T	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr12	117965093	.	CACACACACACACAG	C	403.73	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr12	117996471	rs73405365	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr12	118017201	rs4767569	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	118020037	rs1875142	C	A	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,60:0.43:139
chr12	118020045	rs12369419	C	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:64,94:0.59:158
chr12	118199286	rs617641	C	G	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	118455759	rs2393374	T	G	7996.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:197,370:0.65:567
chr12	118480874	rs7312586	G	A	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:44,89:0.67:133
chr12	118520170	rs7488309	G	A	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	118520240	rs6490164	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	118541239	rs7961197	C	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr12	118574182	rs2293444	A	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	118589090	.	GCGCGCACACACACACACA	G	530.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.738;QD=14.74;ReadPosRankSum=-0.360;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	118589094	.	GCA	G	304.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=-1.346;QD=9.83;ReadPosRankSum=1.490;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr12	118639073	.	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.271;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr12	118639312	rs17440433	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr12	118676100	rs61945206	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	118676940	rs16948197	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:88,34:0.28:122
chr12	118682751	rs428073	C	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:106,63:0.37:169
chr12	118817877	rs10850967	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:50,18:0.26:68
chr12	118821800	.	C	CT	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=6.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.690;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr12	118827971	rs7304342	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	118828801	rs61943397	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr12	118838638	rs7309484	C	T	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:262,127:0.33:389
chr12	118839867	rs61943404	G	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:206,119:0.37:325
chr12	118841410	rs7136676	C	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:185,86:0.32:271
chr12	118851925	rs7312555	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr12	119563064	rs7311828	A	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr12	119563084	rs7296134	C	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:125,72:0.37:197
chr12	119563288	rs34186549	A	AC	2095.73	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:156,89:0.36:245
chr12	119563372	rs58198276	C	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr12	119568421	rs7298308	C	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr12	119568670	rs7298583	C	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:151,70:0.32:221
chr12	119568691	rs4298970	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:134,64:0.32:198
chr12	119591176	rs34002484	A	AC	1937.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	119866533	rs1064319	A	G	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:154,80:0.34:234
chr12	119871387	rs1716471	A	G	4845.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:144,228:0.61:372
chr12	119871493	rs1716470	G	A	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,61:0.60:101
chr12	119871533	rs1727388	T	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr12	119916827	rs116281503	G	A	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:23,58:0.72:81
chr12	119937983	rs482802	A	C	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=1.103;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:27,46:0.63:73
chr12	119958068	rs573590	T	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr12	120067561	rs2301653	T	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	120067727	rs2301654	C	T	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	120067864	rs2893805	G	A	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	120078577	rs2301655	T	C	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=27.05;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	120151501	rs74614893	G	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:93,51:0.35:144
chr12	120158203	rs7299963	C	T	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:62,128:0.67:190
chr12	120171995	rs278109	T	C	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:113,177:0.61:290
chr12	120189879	rs904655	A	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-1.540;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr12	120189888	rs904654	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-2.241;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr12	120190059	rs147146275	CAG	C	283.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,13:0.24:54
chr12	120220282	rs440299	A	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr12	120220589	rs385959	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr12	120270528	rs4767849	T	C	3914.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	120436658	rs77211221	A	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	120499446	rs11431036	A	AG	6566.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	120502726	rs2286040	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr12	120510171	rs11340414	TA	T	255.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	120518935	rs112656471	T	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr12	120527599	rs17841967	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr12	120534471	rs1054631	C	G	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:54,128:0.70:182
chr12	120535169	rs61748076	G	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.897;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr12	120536783	rs7970908	C	T	9082.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:220,407:0.65:627
chr12	120537042	rs7971249	C	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	120541553	rs11065019	A	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr12	120546136	rs7139151	G	A	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.39;ReadPosRankSum=0.726;SOR=2.115;set=HC	GT:AD:AF:DP	0/1:20,26:0.57:46
chr12	120546145	rs7294975	C	G	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.417;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.26;ReadPosRankSum=-0.033;SOR=1.775;set=HC	GT:AD:AF:DP	0/1:22,31:0.58:53
chr12	120567406	rs2240312	C	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	120575549	rs3864938	A	C	10024.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	120588852	rs4503602	A	G	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	120589160	rs2286046	A	G	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	120591251	rs10735071	C	T	10905.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr12	120602669	.	GT	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.238;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	120606163	rs6490286	T	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	120612929	rs11360220	CA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.133;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr12	120621872	rs74513482	G	C	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:58,114:0.66:172
chr12	120628027	rs374746867	CA	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=5.488;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.962;QD=1.47;ReadPosRankSum=-0.612;SOR=1.475;set=HC	GT:AD:AF:DP	0/1:75,33:0.31:108
chr12	120632249	rs141933633	C	G	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr12	120635309	rs200853016	A	AATCCAAGT	1388.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr12	120661977	rs4767884	T	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	120720038	rs7960743	T	C	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	120750239	rs2261612	A	G	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	120783527	rs1076205	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	120783561	rs1076206	T	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	120791042	rs1007469	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	120794653	rs1179441	T	C	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	120796703	rs1179445	T	A	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	120800823	rs757123	A	G	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr12	120801064	rs34243955	GC	G	220.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	120806129	rs111293994	C	CT	3050.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=35.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	120897652	rs28390349	T	C	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	120947948	rs500003	G	A	10048.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr12	120960057	rs503335	C	T	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	120972396	rs541126	C	T	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	120998481	rs787949	G	A	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	121001554	rs7956232	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr12	121004564	rs35710723	CA	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.337;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr12	121093621	rs201880849	AGTGC	A	1724.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:123,88:0.42:211
chr12	121093629	rs112935060	CGTGCGT	C	2818.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:108,124:0.53:232
chr12	121093646	.	G	T	2461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=1.989;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:153,115:0.43:268
chr12	121094110	rs569499	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-1.695;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr12	121097622	rs529584	G	A	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	121131891	rs2393749	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,66:0.65:102
chr12	121132100	rs7964786	C	T	494.22	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr12	121133037	rs504403	G	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr12	121151062	rs3833788	CTCTCTTG	C	4948.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:74,124:0.63:198
chr12	121157535	rs56179458	GC	AA	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;JOINED;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr12	121157851	rs3752531	A	G	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:65,111:0.63:176
chr12	121163518	rs2239760	C	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr12	121174899	rs3914	T	C	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:79,155:0.66:234
chr12	121175984	rs555404	T	C	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:96,156:0.62:252
chr12	121176083	rs1799958	G	A	4279.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:117,186:0.61:303
chr12	121176679	rs3915	C	T	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:80,171:0.68:251
chr12	121176832	.	G	T	1069.77	.	AC=1;AF=0.500;AN=2;DP=168;set=Intersection	GT:AD:AF:DP	0/1:114,54:0.32:168
chr12	121177272	rs3916	G	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr12	121220375	rs2393717	G	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	121221628	rs7137504	C	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	121222411	rs3213570	C	G	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	121222556	rs3213567	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	121248584	rs674021	G	A	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	121341762	rs7966446	C	T	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	121341849	rs2686458	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	121416622	rs1169289	C	G	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:64,132:0.67:196
chr12	121416650	rs1169288	A	C	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:69,116:0.63:185
chr12	121416988	rs2244608	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	121426594	rs1169294	G	A	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:58,97:0.63:155
chr12	121431272	rs2071190	T	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr12	121431300	rs1169301	C	T	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr12	121432302	rs1169302	T	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	121434630	rs55853809	C	CTCATTCAT,CTCAT	4027.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=107;set=Intersection	GT:AF:DP	1/1:1.00:90
chr12	121434833	rs2259852	G	A	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr12	121435342	rs2259820	C	T	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:70,148:0.68:218
chr12	121435427	rs2464196	G	A	5451.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:138,247:0.64:385
chr12	121435475	rs2464195	G	A	6500.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:132,289:0.69:421
chr12	121435587	rs2259816	G	T	4880.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:78,214:0.73:292
chr12	121437221	rs1169304	T	C	18288.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,685:1.00:685
chr12	121437382	rs1169305	A	G	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	121438844	rs735396	T	C	4959.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:84,208:0.71:292
chr12	121439433	rs1169310	G	A	5292.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:141,239:0.63:380
chr12	121439598	rs11065390	G	A	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:309,165:0.35:474
chr12	121442199	rs3751151	T	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:126,60:0.32:186
chr12	121442214	rs3751150	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:123,56:0.31:179
chr12	121444024	rs66710628	AAG	A	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=2.033;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr12	121450165	rs2264750	C	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:25,76:0.75:101
chr12	121450354	rs2264778	C	A	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	121450384	rs2254971	G	C	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	121454257	rs2258227	T	A	17041.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr12	121454313	rs2258287	C	A	13809.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:1,496:1.00:497
chr12	121471216	rs3213546	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr12	121594056	rs208290	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	121600180	rs208293	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:42,85:0.67:127
chr12	121600253	rs208294	T	C	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:52,92:0.64:144
chr12	121603808	rs17526121	A	T	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr12	121605355	rs7958311	G	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:111,57:0.34:168
chr12	121613046	rs7137837	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	121613113	.	C	CAAAAAAAA	481	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=19;HapScore=3;MGOF=35;MMLQ=18;MQ=56.61;NF=16;NR=10;PP=481;QD=18.6153846154;SC=GACCCTGTCTCAAAAAAAAAA;SbPval=0.63;Source=Platypus;TC=57;TCF=34;TCR=23;TR=26;WE=121613123;WS=121613102;set=Platypus	GT:AD:AF:DP	1/0:31,26:0.46:57
chr12	121615103	rs1718119	G	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,65:0.63:103
chr12	121615283	rs1653598	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr12	121622023	rs1626329	C	T	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr12	121622520	rs1653624	A	T	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	121622563	rs1621388	G	A	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:37,81:0.69:118
chr12	121659684	rs7298368	C	T	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:77,148:0.66:225
chr12	121659999	rs1629287	G	A	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:89,143:0.62:232
chr12	121660787	rs25643	T	C	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,113:0.67:169
chr12	121666476	rs3815989	C	T	4658.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:102,205:0.67:307
chr12	121666646	rs25644	A	G	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:135,198:0.59:333
chr12	121670193	rs5801428	CT	C	6360.73	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:96,184:0.66:280
chr12	121678327	rs63023660	C	CTT	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.564;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:65,37:0.36:102
chr12	121682051	rs2686340	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	121690305	rs112943694	T	TCTGGTGATCCGC	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	121690548	rs2686344	T	C	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	121690555	rs2686345	T	C	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	121690587	rs1560568	G	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-0.689;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:18,36:0.67:54
chr12	121691096	rs1132780	G	A	2190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=3.325;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:46,103:0.69:149
chr12	121701438	rs75657508	G	GA	550.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr12	121701681	rs2230776	G	A	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-0.319;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:128,62:0.33:190
chr12	121706533	rs1718120	T	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr12	121712077	rs3817190	T	A	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=3.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-2.218;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:214,90:0.30:304
chr12	121746542	rs79486147	G	A	1159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-2.424;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:134,67:0.33:201
chr12	121764799	rs4980993	A	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	121768248	rs2280067	C	T	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	121773552	rs3751162	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	121785795	rs1169961	C	A	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	121789927	rs1799525	C	A	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr12	121853164	rs11065565	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr12	121870922	rs12427382	G	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=-2.156;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:28,49:0.64:77
chr12	121871006	rs11065575	A	C	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-0.039;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:30,74:0.71:104
chr12	121878659	rs1064951	C	T	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:61,127:0.68:188
chr12	121879111	rs2288154	G	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr12	121880520	rs3751131	G	A	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:38,87:0.70:125
chr12	121881848	rs10849885	G	A	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:87,152:0.64:239
chr12	121882098	rs3817551	T	G	8545.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:210,363:0.63:573
chr12	122012328	rs28461264	T	G	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr12	122013607	rs28468612	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr12	122017848	.	C	CA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.454;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr12	122064773	rs141919534	CCCGCCA	C	9896.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=43.99;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	122079189	rs3741595	C	T	10390.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:251,460:0.65:711
chr12	122079441	rs3825175	T	C	9609.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:268,439:0.62:707
chr12	122097043	.	G	GCA,GCACA	2645.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=105;set=Intersection	GT:AF:DP	1/2:0.17,0.71:90
chr12	122107255	rs35343615	G	A	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:72,120:0.62:192
chr12	122181461	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.904;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr12	122186268	rs28651018	C	T	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:97,64:0.40:161
chr12	122186317	rs28655666	G	A	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:127,64:0.34:191
chr12	122217856	rs59641582	G	GGT	3132.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	122231368	rs2707067	C	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr12	122231573	rs2707066	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.80;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	122235048	rs142048748	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	122243595	rs67605254	ATT	A	366.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.45;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	122243905	rs1168666	C	T	10873.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr12	122248582	rs895952	C	G	21315.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:1,787:1.00:788
chr12	122261456	rs3741593	G	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:222,98:0.31:320
chr12	122281575	rs1795963	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	122284715	rs2247291	T	C	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	122287132	rs3832816	CT	C	294.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	122295335	rs1154510	T	C	10419.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr12	122326812	rs2230681	T	C	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	122359172	rs6486782	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	122359397	rs142042908	G	GGAGGAGGAGGAGAAA	4388.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=48.23;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	122359698	rs10675519	C	CTTT	737.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.51;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr12	122361929	rs34885077	CT	C	676.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	122389248	rs1185260	A	G	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	122391963	rs1154513	A	G	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	122394921	rs11043271	A	C	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	122409664	rs658957	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	122439369	rs1182927	T	C	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	122481641	rs111943468	C	CA	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=6.420;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.283;SOR=0.080;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr12	122492598	rs2280573	A	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr12	122497001	rs28629903	T	C	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr12	122611620	rs75503016	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	122611641	rs78324047	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	122612325	rs7488393	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:61,26:0.30:87
chr12	122612350	rs7486198	G	T	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:90,39:0.30:129
chr12	122612598	rs7484733	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr12	122612625	rs10847611	C	G	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.80;SOR=2.043;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	122612625	.	CGCCTGCCCTG	GGCCTGCCCTA,GGCCTGCCCTG	882	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=5,19;NR=11,50;PP=104,882;QD=9.84174217889;SC=GGTAGTGCAGCGCCTGCCCTG;SbPval=0.47;Source=Platypus;TC=69;TCF=19;TCR=50;TR=16,69;WE=122612643;WS=122612615;set=Platypus	GT:AF:DP	0/1:0.23:69
chr12	122612635	rs6489238	G	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.015;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=6.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-1.798;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr12	122613540	rs6489244	T	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr12	122613599	rs10847853	A	G	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	122614060	rs7487608	G	T	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:217,110:0.34:327
chr12	122614209	rs5801481	CT	C	3037.73	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:182,113:0.38:295
chr12	122614387	rs7487292	T	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr12	122615515	rs4758654	C	G	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:51,121:0.70:172
chr12	122616759	rs7955571	G	A	2650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=-0.547;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:54,68:0.56:122
chr12	122616766	rs7955575	G	A	2681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.72;ReadPosRankSum=0.422;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:65,71:0.52:136
chr12	122617989	rs7978353	A	G	4979.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:145,217:0.60:362
chr12	122618131	rs36045144	A	G	5067.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:125,268:0.68:393
chr12	122619528	rs11287019	CT	C	627.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr12	122622207	rs11307581	CT	C	6715.73	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:144,216:0.60:360
chr12	122623000	rs4758686	T	C	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:105,173:0.62:278
chr12	122625212	rs7488857	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr12	122626381	rs11057509	G	A	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:33,83:0.72:116
chr12	122626842	rs4758685	G	A	6868.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:158,319:0.67:477
chr12	122658383	rs6489173	A	G	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	122668965	rs10847623	T	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:29,7:0.19:36
chr12	122674032	rs10847725	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	122674758	rs4758651	G	A	19476.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr12	122684966	rs11060679	G	C	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	122689244	rs12828049	C	T	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:27,75:0.74:102
chr12	122691738	rs4758675	C	A	13472.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:1,480:1.00:481
chr12	122723317	.	T	TAC	793.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.877;QD=9.56;ReadPosRankSum=-1.023;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:44,39:0.47:83
chr12	122738097	rs35143468	C	CA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.12;ReadPosRankSum=-1.474;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	122760929	.	CCA	C	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.180;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:225,32:0.12:257
chr12	122762763	.	GA	G	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=9.410;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.368;QD=2.51;ReadPosRankSum=0.987;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:41,23:0.36:64
chr12	122804034	rs3825097	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr12	122812503	rs1129167	G	C	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	122817507	rs7956480	A	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	122838956	rs4997380	A	G	865.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	122862233	rs139445702	T	C	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:67,107:0.61:174
chr12	122864789	.	CA	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-1.880;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr12	122964708	rs10846978	T	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	122965020	rs63098963	C	CT	195.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=0.645;QD=10.30;ReadPosRankSum=-0.550;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr12	122966016	rs57144421	T	TA	733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-1.190;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr12	122966373	rs4758692	T	C	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	122968149	rs11354559	GA	G	1091.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr12	122983460	rs7314638	A	G	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	122991478	rs9988963	C	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr12	122993011	rs10773230	C	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	122995468	rs10709275	GA	G	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	122999128	.	TA	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.82;ReadPosRankSum=-1.006;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	122999358	rs11322682	CA	C	330.87	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr12	122999535	rs6489056	C	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	123001737	rs57311174	G	A	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	123003317	rs11058562	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	123030788	rs7968222	G	T	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:20,62:0.76:82
chr12	123031330	rs78620163	A	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr12	123061352	rs145299175	A	AT	59.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	123067587	rs7398861	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr12	123070038	rs140721718	T	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,43:0.74:58
chr12	123070218	rs36117464	G	A	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:95,184:0.66:279
chr12	123071365	rs7311684	A	T	452.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=-0.784;QD=14.61;ReadPosRankSum=1.102;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	123071366	rs7315477	T	A,TTTTA	1149.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;QD=39.65;SOR=1.688;set=HC	GT:AD:AF:DP	1/2:0,13,16:0.45,0.55:29
chr12	123079020	rs10847242	T	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr12	123079035	rs4319547	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	123087442	rs7307735	A	G	7969.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	123087819	.	T	TA	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.143;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:34,34:0.50:68
chr12	123102921	rs11837038	T	G	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:73,164:0.69:237
chr12	123103016	rs7301589	G	T	1794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=28.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=-1.236;SOR=1.895;set=HC	GT:AD:AF:DP	0/1:135,106:0.44:241
chr12	123106893	rs1014188	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr12	123110654	rs3803005	T	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	123186880	rs28682471	C	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.812;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=68.689;MLEAC=1;MLEAF=0.500;MQ=51.07;MQRankSum=-7.242;QD=0.66;ReadPosRankSum=-2.754;SOR=3.762;set=HC	GT:AD:AF:DP	0/1:312,43:0.12:355
chr12	123200099	rs61955034	T	C	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:47,87:0.65:134
chr12	123200247	rs56308926	G	C	5434.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.54;MQRankSum=-1.008;QD=25.52;ReadPosRankSum=-0.865;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:2,211:0.99:213
chr12	123200334	rs116821988	T	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.814;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=96.401;MLEAC=1;MLEAF=0.500;MQ=45.90;MQRankSum=-9.059;QD=2.42;ReadPosRankSum=0.434;SOR=7.209;set=HC	GT:AD:AF:DP	0/1:200,38:0.16:238
chr12	123200527	rs118091133	T	C	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.287;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=34.750;MLEAC=1;MLEAF=0.500;MQ=45.12;MQRankSum=-6.124;QD=6.61;ReadPosRankSum=1.304;SOR=3.705;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr12	123200693	rs17884481	A	G	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:80,163:0.67:243
chr12	123200768	rs1798192	T	G	5205.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:127,227:0.64:354
chr12	123200937	rs1696352	T	G	5544.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:117,240:0.67:357
chr12	123201291	rs3825156	A	G	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:111,153:0.58:264
chr12	123201445	rs35024436	TA	T	168.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	123265952	rs1798563	A	G	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	123281967	rs10744394	G	A	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	123286211	rs375118548	C	T	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:89,50:0.36:139
chr12	123290951	rs34775544	GTT	G	2716.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.552;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=4.702;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.320;QD=20.12;ReadPosRankSum=-2.433;SOR=1.964;set=HC	GT:AD:AF:DP	1/1:20,115:0.85:135
chr12	123297718	rs4759391	T	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	123307754	rs7954285	CA	TG	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	123333065	rs2135014	C	T	8348.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr12	123334874	.	C	CCCCTGGTTCAGTGGCCGCTGGGTTGGGGGGG	893.73	.	AC=2;AF=1.00;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.09;QD=34.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	123335287	rs12369846	A	G	223.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	123335483	rs2271048	A	G	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	123335488	rs2271049	G	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	123335527	rs2271050	C	T	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	123339344	rs2292136	A	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	123339358	rs2292137	C	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:74,27:0.27:101
chr12	123339712	rs2292138	A	G	10580.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr12	123340453	rs11418615	G	GC	1100.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr12	123340454	.	C	CT	401.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.653;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-0.703;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr12	123341289	rs897386	A	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	123341297	rs897385	A	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	123341833	rs7138398	G	C	6956.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	123341863	rs2343109	G	C	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	123342628	rs34131980	CCTCTT	C	6019.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	123343571	rs2343110	T	G	10143.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,372:0.99:374
chr12	123343572	rs5801491	G	GGC	9718.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:4,372:0.99:376
chr12	123344910	rs937765	A	C	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr12	123345347	rs7306948	G	A	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	123345360	rs7298176	T	C	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	123345736	rs10847910	C	G	17380.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr12	123345756	rs3215148	G	GC	9508.73	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr12	123352179	rs3825143	C	T	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	123414874	.	A	G	371.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	123425575	rs4148866	C	T	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:213,132:0.38:345
chr12	123433137	rs10848106	T	C	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	123434224	.	G	A	69.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:25,6:0.19:31
chr12	123460823	rs883563	A	G	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr12	123460962	rs884956	T	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:102,78:0.43:180
chr12	123461117	rs117913606	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:72,48:0.40:120
chr12	123466111	rs55742290	C	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:81,68:0.46:149
chr12	123470586	rs12828755	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	123471094	rs12811109	G	A	4820.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:96,211:0.69:307
chr12	123471402	rs2049506	T	C	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	123473254	rs1463877	T	C	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:102,57:0.36:159
chr12	123476586	rs7135296	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr12	123485188	rs883263	A	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:186,108:0.37:294
chr12	123492112	rs3897102	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr12	123645803	rs1051431	G	A	11730.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr12	123647725	rs1727296	G	C	4680.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	123651162	rs1716167	A	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	123664514	rs1727301	G	A	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	123665695	rs1727306	A	G	3781.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.26;ReadPosRankSum=2.730;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:2,142:0.99:144
chr12	123679171	.	A	ATT	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=21.09;ReadPosRankSum=0.968;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,18:0.90:20
chr12	123682594	rs11610710	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	123694724	rs2682434	C	T	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	123699200	rs77954523	GTTT	G	1934.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	123699520	rs1727322	A	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	123703103	rs2851451	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	123707527	rs34047404	GTA	G	2064.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:14,74:0.84:88
chr12	123707552	rs36043549	TA	T	4154.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	123710835	rs1626703	A	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	123715113	rs941306	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	123738678	rs1568427	A	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	123746357	rs4759416	C	G	12548.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr12	123746510	rs4759417	C	T	4438.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	123751747	rs370848964	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr12	123787427	.	CA	C	1260.73	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:66,40:0.38:106
chr12	123794022	rs6488867	T	C	7836.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr12	123794450	rs2277343	A	T	1171.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	123799974	rs6488868	A	G	6833.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	123801672	rs10846515	T	G	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	123810662	rs111400678	A	AC	4726.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=31.72;SOR=2.046;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	123810873	rs61388686	G	A	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr12	123812207	rs7959415	C	T	8012.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	123812611	rs10846517	A	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	123812629	rs28419092	G	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	123813493	rs7301163	C	A	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	123815146	rs369148541	TA	T	190.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-2.151;SOR=0.430;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr12	123815668	rs6488869	A	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	123816007	rs11282939	T	TATGTTG	3866.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	123821234	rs7486223	T	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	123825339	rs7312145	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	123825389	rs7315453	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	123832710	rs11325003	TA	T	7824.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr12	123832746	rs10846523	G	A	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	123875394	rs28660993	C	T	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	123960444	rs375190049	ATTTTTT	A	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;QD=39.49;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	123960474	rs28971833	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	124003047	rs60479214	CA	C	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.486;QD=1.27;ReadPosRankSum=-1.823;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr12	124008073	rs2292500	A	G	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	124021035	.	A	AT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.792;QD=3.12;ReadPosRankSum=-0.882;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	124069109	.	C	T	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.460;QD=3.49;ReadPosRankSum=0.965;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr12	124069111	rs71088937	GGGC	G	1124.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr12	124069213	rs786446	T	C	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	124072268	rs35178369	G	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-1.150;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr12	124081391	.	T	C	239.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	124086620	rs786427	G	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	124086998	rs786428	C	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	124090453	rs786436	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	124090605	rs4047521	ACT	A	4232.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	124097528	rs884892	A	G	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	124097824	rs3748268	A	G	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-2.241;SOR=0.325;set=HC	GT:AD:AF:DP	0/1:17,31:0.65:48
chr12	124099925	rs3748269	T	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,40:0.85:47
chr12	124101347	rs6488883	G	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr12	124102894	rs79786297	G	A	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.801;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:52,30:0.37:82
chr12	124104460	rs7302183	C	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	124104551	rs10773019	A	G	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:52,79:0.60:131
chr12	124110934	rs3704	G	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:97,54:0.36:151
chr12	124111723	rs7298287	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr12	124116833	rs7300147	G	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-0.966;SOR=0.253;set=HC	GT:AD:AF:DP	0/1:27,41:0.60:68
chr12	124117089	rs10773020	T	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr12	124124445	rs11572934	C	CGTGT	7642.73	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:128,198:0.61:326
chr12	124130128	rs2292702	T	C	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:71,122:0.63:193
chr12	124171640	rs3748271	A	G	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:77,155:0.67:232
chr12	124172746	rs7302449	T	C	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.034;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-0.718;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:37,79:0.68:116
chr12	124172760	.	CT	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.021;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr12	124174937	rs11057329	A	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr12	124177289	rs7137946	T	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr12	124179417	rs7966867	T	C	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:40,103:0.72:143
chr12	124191173	.	A	G	1777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-1.641;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:33,75:0.69:108
chr12	124197334	.	C	T	1098.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr12	124207098	rs7301641	T	C	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	124209332	rs1139789	T	C	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.25;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	124209352	rs11837144	C	T	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	124210782	rs1399961	T	C	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	124218359	rs10744159	T	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	124220055	rs2271660	T	C	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	124220354	rs2333838	A	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	124229429	rs7135542	T	C	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	124242458	rs370511382	CT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.844;QD=1.38;ReadPosRankSum=-0.189;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr12	124258887	rs7131750	T	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	124265687	rs11057353	T	C	9394.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr12	124267638	rs11057354	A	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	124267703	rs11057355	T	C	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	124268458	rs7303002	A	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	124270421	.	G	A	5819.77	.	AC=1;AF=0.500;AN=2;DP=427;set=Intersection	GT:AD:AF:DP	0/1:160,262:0.62:422
chr12	124274474	rs10846559	A	G	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	124274758	rs35056478	C	CT	575.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr12	124281419	rs368845242	AT	A	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.131;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr12	124325977	rs4930729	T	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	124330311	rs34934281	C	T	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=2.259;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:134,62:0.32:196
chr12	124332702	rs10846561	A	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	124333519	rs7960854	C	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	124350360	rs7313897	G	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	124350444	rs7314963	C	T	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	124350704	rs10773043	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	124352338	rs10846565	T	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	124360117	rs10846567	G	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	124362256	rs113178558	T	TG	1594.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.276;QD=26.14;ReadPosRankSum=-0.304;SOR=1.193;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr12	124363724	rs72053758	GTGTC	G	1504.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	124364131	rs1317312	G	C	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	124366150	rs34756279	CT	C	3156.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:10,174:0.95:184
chr12	124383044	rs12306328	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	124387574	rs58411567	G	A	2597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.883;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=45.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=2.049;SOR=2.700;set=HC	GT:AD:AF:DP	0/1:68,79:0.54:147
chr12	124387586	rs61587964	A	G	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:67,93:0.58:160
chr12	124392843	rs79810037	C	G	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:307,156:0.34:463
chr12	124393076	rs74624536	T	G	8072.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr12	124393117	rs78985577	G	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:106,54:0.34:160
chr12	124398843	rs113172657	A	ACTG	5150.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:83,130:0.61:213
chr12	124399155	rs79478560	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	124399550	rs1316952	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:92,46:0.33:138
chr12	124409502	rs7133378	G	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr12	124414098	rs3802999	C	T	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	124417889	rs4930721	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	124418472	rs77020228	C	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	124418674	rs12298484	C	T	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	124419062	rs11057396	A	C	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	124420076	rs113646068	C	CAGGA	3741.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	124427169	rs35650208	CCA	C	1341.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr12	124427306	rs11057401	T	A	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	124427524	rs35825716	G	C	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	124428162	rs4930725	T	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	124799387	rs904647	G	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	124810174	rs10846657	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	124810968	rs1006100	C	T	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	124813583	rs117604817	C	T	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr12	124824721	rs143952466	C	CGCCGCTGCT	3316.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	124825447	rs1702334	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	124829234	rs1263992	C	T	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	124829255	rs1244085	A	G	6011.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	124832474	rs1244065	G	A	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	124832492	rs1244064	C	G	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	124832606	rs1244063	A	G	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	124838772	rs1244082	C	G	11178.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr12	124838897	rs1244081	A	G	4369.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	124839867	rs870050	A	G	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	124848137	rs1794956	T	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	124856660	rs3741513	T	A	15640.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:1,588:1.00:589
chr12	124857234	rs1702329	C	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	124859045	rs2695993	A	G	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	124859135	rs11057606	G	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	124873079	rs7960906	T	G	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	124885249	rs2293514	C	T	2959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-1.145;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:74,133:0.64:207
chr12	124885290	rs2293513	T	C	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:59,104:0.64:163
chr12	124887058	rs35831183	G	GGCT,GGCTGCT	2576.80	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=273;set=Intersection	GT:AF:DP	0/1:0.61:187
chr12	124887093	.	C	CTGT	1116	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=24;MQ=60.04;NF=17;NR=66;PP=1116;QD=13.5060240964;SC=GCTGCTGCTGCTGTTGTTGCT;SbPval=0.26;Source=Platypus;TC=138;TCF=23;TCR=115;TR=83;WE=124887101;WS=124887083;set=Platypus	GT:AD:AF:DP	0/1:55,83:0.60:138
chr12	124907237	rs144997959	CA	C	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.877;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=8.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=1.737;SOR=0.037;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr12	124911129	rs73225425	G	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr12	124922325	rs1702322	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr12	124934459	rs1147284	C	G	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	124950652	rs4765569	T	C	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:157,94:0.37:251
chr12	124968349	rs747443	T	C	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	125263204	rs701104	A	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	125284748	rs5888	A	G	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	125324553	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=2;HapScore=1;MGOF=32;MMLQ=23;MQ=44.42;NF=160;NR=151;PP=2965;QD=20;SC=TTTCTCCGCACCCTCACCCCA;SbPval=0.58;Source=Platypus;TC=328;TCF=166;TCR=162;TR=311;WE=125324561;WS=125324543;set=Platypus	GT:AD:AF:DP	1/1:17,311:0.95:328
chr12	125324570	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=2;HapScore=1;MGOF=28;MMLQ=19;MQ=48.09;NF=185;NR=184;PP=2965;QD=20;SC=CCCAACGGCACACATGGGCCC;SbPval=0.5;Source=Platypus;TC=389;TCF=194;TCR=195;TR=369;WE=125324578;WS=125324560;set=Platypus	GT:AD:AF:DP	1/1:20,369:0.95:389
chr12	125324731	.	A	AT	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.403;QD=6.91;ReadPosRankSum=-1.246;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr12	125396165	rs55777033	T	TAAAAAAAAA	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=48.77;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	125398039	rs1071862	G	C	9682.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr12	125400206	rs6488957	A	G	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	125438616	rs11831506	A	C	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:189,106:0.36:295
chr12	125441194	rs149616171	G	A	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:45,104:0.70:149
chr12	125441359	rs10773127	T	C	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:153,102:0.40:255
chr12	125441856	rs11057932	G	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr12	125444975	rs4765007	T	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=1.319;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:73,49:0.40:122
chr12	125449380	.	A	T	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=6.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.531;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:108,50:0.32:158
chr12	125451277	rs56213993	T	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:73,47:0.39:120
chr12	125451767	rs60252902	G	A	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:229,138:0.38:367
chr12	125453115	rs11057939	C	T	5172.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:106,228:0.68:334
chr12	125453232	rs10773130	A	G	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.62;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	125453232	.	ACAC	GCAA,GCAC	1672	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=7;HapScore=1;MMLQ=28;MQ=60.02;NF=22,63;NR=37,105;PP=833,1672;QD=15.024879235;SC=AGTGGGGGGGACACGAGCTTC;SbPval=0.55;Source=Platypus;TC=168;TCF=63;TCR=105;TR=59,168;WE=125453243;WS=125453214;set=Platypus	GT:AF:DP	0/1:0.35:168
chr12	125453235	rs11057940	C	A	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=0.586;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:116,58:0.33:174
chr12	125453277	rs10846794	G	A	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:46,90:0.66:136
chr12	125453540	rs10846795	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr12	125453542	rs11614657	G	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr12	125456004	rs4542508	C	A	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=2.402;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:60,45:0.43:105
chr12	125456911	rs6488966	A	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	125457203	rs7304979	G	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr12	125562809	rs7303092	G	A	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	125562966	rs4765025	T	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	125587478	rs60237232	GA	G	2063.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.400;QD=8.82;ReadPosRankSum=0.352;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:87,147:0.63:234
chr12	125587706	rs7138557	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr12	125603152	rs35814268	C	T	2789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.671;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:71,135:0.66:206
chr12	125810958	rs551601	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	125811056	rs550677	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.00;SOR=6.666;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	125833964	rs7971264	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr12	125834095	rs1491893	C	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:202,105:0.34:307
chr12	125834395	rs3803155	T	C	15593.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr12	126003934	rs964998	T	C	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-1.656;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:61,41:0.40:102
chr12	126003940	rs4765259	A	T	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-1.519;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:66,45:0.41:111
chr12	126068417	rs6489006	T	C	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	126128871	rs12305906	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr12	126135195	rs3803152	A	G	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:26,75:0.74:101
chr12	126932624	rs758564	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr12	126932764	rs758565	C	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr12	126947430	rs1019149	G	T	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	126950302	rs10847164	G	A	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:76,127:0.63:203
chr12	127229254	rs10847207	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr12	127229327	rs10773323	T	A	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:128,53:0.29:181
chr12	127229506	rs10847208	T	C	4670.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:145,223:0.61:368
chr12	128108780	rs3803151	T	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	128778575	rs1709696	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:70,116:0.62:186
chr12	128899673	rs11059681	A	G	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:64,103:0.62:167
chr12	128900005	rs1683723	G	A	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:290,190:0.40:480
chr12	129028354	rs77116255	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr12	129028708	rs11610490	G	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	129028712	rs12812251	G	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	129181625	rs902058	A	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	129181650	rs138833535	TC	T	647.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr12	129181701	rs902059	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	129181810	rs885546	A	G	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	129181834	rs902060	A	G	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	129189591	rs4533104	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	129189850	rs7959567	C	T	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:71,168:0.70:239
chr12	129190021	rs11059841	A	G	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	129190717	rs55760351	C	T	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:95,168:0.64:263
chr12	129190913	rs7980709	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr12	129278864	rs1059312	A	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.350;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:68,28:0.29:96
chr12	129283711	rs2291350	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr12	129298468	rs10688448	C	CAATA	802.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr12	129298564	rs73149855	G	C	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr12	129298727	.	A	AGACCTGAGCGCCGTATGATG	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=13.355;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.660;QD=0.59;ReadPosRankSum=-4.142;SOR=1.689;set=HC	GT:AD:AF:DP	0/1:84,11:0.12:95
chr12	129298759	.	C	T	1928	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=1;MGOF=29;MMLQ=20;MQ=55.18;NF=85;NR=62;PP=1928;QD=13.3521851194;SC=ACCTGACCGCCGTATGATGGA;SbPval=0.57;Source=Platypus;TC=423;TCF=242;TCR=181;TR=147;WE=129298767;WS=129298749;set=Platypus	GT:AD:AF:DP	0/1:276,147:0.35:423
chr12	129298775	.	C	CCACCGTATGATGGACCTGACCGCTGTATGATGGACCTGAG	2515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=5.104;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-1.611;QD=14.89;ReadPosRankSum=5.072;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:119,50:0.30:169
chr12	129298779	.	C	CGTATGATGGACCTGACCGCT	2472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DP=368;ExcessHet=3.0103;FS=3.764;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=3.511;QD=7.19;ReadPosRankSum=7.217;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:250,94:0.27:344
chr12	129298819	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=1;HapScore=1;MGOF=24;MMLQ=20;MQ=55.59;NF=136;NR=136;PP=2962;QD=20;SC=ACCTGACCGCCGTATGATGGA;SbPval=0.51;Source=Platypus;TC=503;TCF=249;TCR=254;TR=272;WE=129298827;WS=129298809;set=Platypus	GT:AD:AF:DP	0/1:231,272:0.54:503
chr12	129298819	.	C	CGTATGATGGACCTGACCGCTGTATGATGGACCTGACCGCCATATGATGGACCTGACCGCTGTATGATGGACCTGACCGCT	9358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-6.576;QD=31.72;ReadPosRankSum=0.227;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:160,135:0.46:295
chr12	129299675	rs2306683	C	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:30,67:0.69:97
chr12	129360367	.	CA	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.427;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr12	129399352	rs11610307	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr12	129410738	rs141839609	CAAT	C,CAATAAT	924.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;set=Intersection	GT:AF:DP	1/2:0.71,0.29:31
chr12	129410789	rs12425716	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:87,39:0.31:126
chr12	129432149	rs470655	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	129558537	rs74344050	G	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:134,53:0.28:187
chr12	129559557	rs10773594	C	T	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	129566284	rs34663182	AT	A	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.892;QD=3.11;ReadPosRankSum=-2.243;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:90,60:0.40:150
chr12	130015535	rs71082733	G	GA	1377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.966;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.816;QD=10.36;ReadPosRankSum=0.626;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:42,91:0.68:133
chr12	130521184	rs611963	G	A	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	130521207	rs622000	C	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;MQ=59.69;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	130521234	rs34472041	C	CAAA	1362.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	130521306	rs600949	G	C	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=25.80;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	130838987	rs2173082	C	T	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.459;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:54,41:0.43:95
chr12	130839645	rs1874521	A	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr12	130847389	rs2242363	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:113,48:0.30:161
chr12	130883554	.	C	CT	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=6.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.250;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:98,33:0.25:131
chr12	130883602	rs200426157	GC	G	1593.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:153,64:0.29:217
chr12	130884202	rs2292669	A	G	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.003;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:88,38:0.30:126
chr12	130884347	rs756186	A	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr12	130892163	rs7310840	G	A	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr12	130897150	rs12315966	G	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.863;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:60,28:0.32:88
chr12	130916685	rs7966010	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	130929546	rs10848102	C	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr12	130929599	rs7952756	A	G	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:29,70:0.71:99
chr12	130935710	rs2398519	C	G	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	130941150	rs2277361	G	C	7722.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr12	130941338	rs1356081	G	A	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	131276448	rs4759786	G	T	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	131280714	rs10848205	T	C	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:197,80:0.29:277
chr12	131280752	rs34749116	G	A	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:24,93:0.79:117
chr12	131285663	rs1881060	T	C	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	131296880	rs7961690	G	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr12	131306314	rs17564	C	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:71,48:0.40:119
chr12	131311629	rs112850087	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=1.011;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	131323708	rs10848214	T	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	131453378	rs7309920	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	131453461	rs80224014	G	T	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:220,111:0.34:331
chr12	131466562	rs4759534	T	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	131471608	rs1547577	T	C	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	131476665	rs55788836	CAAA	C	817.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;QD=17.78;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr12	131498946	rs1212936	C	T	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	131498995	rs1195923	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	131555329	rs10744491	C	A	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	131561285	.	G	A	1525.77	.	AC=1;AF=0.500;AN=2;DP=224;set=Intersection	GT:AD:AF:DP	0/1:142,79:0.36:221
chr12	131602811	rs7961434	C	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr12	131603031	rs7295131	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:98,50:0.34:148
chr12	131620588	rs868158	A	G	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	131620738	rs2280683	A	G	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	131622735	rs7302341	T	C	4305.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:161,207:0.56:368
chr12	131623850	rs35160436	A	AC	4222.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	131687263	rs61937058	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:128,52:0.29:180
chr12	131687287	rs7486559	G	C	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	131692116	rs11061381	T	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:69,25:0.27:94
chr12	132209932	rs138640311	ATG	A	5139.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:81,149:0.65:230
chr12	132237848	rs1982528	T	C	20077.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,737:1.00:737
chr12	132241229	rs7136191	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	132269830	rs66665803	G	GA	2132.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	132271113	rs7136643	T	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	132283436	.	G	GA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.675;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr12	132283858	rs7967723	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:79,42:0.35:121
chr12	132284053	rs7967932	G	A	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:88,57:0.39:145
chr12	132313098	.	G	GGCTGCCGCT	144.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	132313103	.	C	CCGCTGCTGT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.98;ReadPosRankSum=-1.622;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr12	132323082	rs7971187	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	132323089	rs7965611	C	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	132323294	rs4964884	T	C	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.64;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	132323344	rs113178073	G	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-2.107;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr12	132325239	rs6598163	G	A	12364.77	.	AC=1;AF=0.500;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	0/1:336,550:0.62:886
chr12	132325376	rs34515698	C	T	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:482,214:0.31:696
chr12	132326051	rs4964929	C	T	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	132326298	rs35466884	G	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr12	132330048	rs12099616	A	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr12	132395052	rs7295593	G	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	132396343	rs11615995	C	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	132396603	rs11616018	C	T	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	132398247	rs199854918	C	CA	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:85,28:0.25:113
chr12	132398255	rs68126752	AC	A	50.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.327;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr12	132398256	rs4964880	C	A	1734.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-1.316;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:31,83:0.73:114
chr12	132399065	rs12303764	T	G	7966.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	132401859	.	CG	C	32	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=4;MGOF=60;MMLQ=28;MQ=43.24;NF=2;NR=0;PP=32;QD=40.515449935;SC=GGGGGGAGCTCGGAGGCCGTG;SbPval=1.0;Source=Platypus;TC=4;TCF=3;TCR=1;TR=2;WE=132401881;WS=132401849;set=Platypus	GT:AD:AF:DP	1/0:2,2:0.50:4
chr12	132402020	rs4964918	T	C	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	132403161	rs11609348	A	G	8143.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr12	132403323	rs113517126	C	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.591;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=8.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.93;ReadPosRankSum=-0.659;SOR=2.815;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	132403325	.	G	GGT	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.533;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=8.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.40;ReadPosRankSum=-1.345;SOR=2.815;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	132404212	rs7299195	A	G	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	132406275	rs7311029	A	C	5599.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	132427909	rs7961398	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	132476121	rs62737460	C	CT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-3.440;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr12	132512261	rs35569693	T	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	132547093	.	A	ACAG	4107.73	.	AC=1;AF=0.500;AN=2;DP=455;set=Intersection	GT:AD:AF:DP	0/1:83,192:0.70:275
chr12	132626668	rs1133690	T	C	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	132630822	rs10794454	C	T	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:204,136:0.40:340
chr12	132631855	rs11543305	C	T	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:154,90:0.37:244
chr12	132633435	.	ACCTCGGTGAGTGCCGCCGCCTCGCTCACACCACACCCCTAATCC	A	683.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=7.744;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.828;QD=3.80;ReadPosRankSum=0.388;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:135,45:0.25:180
chr12	132633458	rs79736234	G	A	3593.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=6.492;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.835;QD=20.89;ReadPosRankSum=0.425;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:45,127:0.74:172
chr12	132633506	rs76606798	C	A	4418.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.341;MLEAC=2;MLEAF=1.000;MQ=59.29;MQRankSum=-0.476;QD=41.30;ReadPosRankSum=1.778;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:8,99:0.93:107
chr12	132633506	.	CT	AC	2119	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=1;MGOF=24;MMLQ=28;MQ=55.16;NF=13;NR=34;PP=2119;QD=46.2227207417;SC=CGCCTCACTCCTACCACACCC;SbPval=0.69;Source=Platypus;TC=74;TCF=23;TCR=51;TR=47;WE=132633515;WS=132633496;set=Platypus	GT:AD:AF:DP	1/0:27,47:0.64:74
chr12	132633507	rs80035314	T	C	2079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.806;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=15.267;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-0.622;QD=19.81;ReadPosRankSum=0.440;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:54,51:0.49:105
chr12	132635521	rs7397057	T	C	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.926;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:168,82:0.33:250
chr12	132635779	rs12818246	C	T	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	132682481	rs12308155	T	G	12952.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr12	132682484	rs12306514	A	G	12932.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	132683632	rs4074045	A	C	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	132683690	rs4074046	G	A	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr12	132683862	rs6598205	G	A	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	132683961	rs6598206	T	C	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	132685566	rs7953158	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	132685826	rs11246988	T	C	7464.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	132685837	rs10794457	A	G	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	132685899	rs11246989	G	C	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	132685940	rs61329617	A	AGGCCCCATCC	2014.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	132685953	rs59310537	T	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	132685958	rs35906641	A	ACC	1277.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	132688137	rs7486927	A	G	10526.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr12	132688279	rs10902510	A	G	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	132839265	rs28431148	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr12	132852957	rs28561974	C	A	13205.77	.	AC=1;AF=0.500;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	0/1:276,594:0.68:870
chr12	132911861	rs28672358	G	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr12	132911948	rs28722154	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr12	132912031	rs28420217	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr12	132912181	rs71453143	CGTGT	C	719.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:65,24:0.27:89
chr12	133031898	rs10870487	A	G	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:50,130:0.72:180
chr12	133032047	.	T	TGTGTGTGCGTGTTGAC	4059.73	.	AC=1;AF=0.500;AN=2;DP=177;set=Intersection	GT:AD:AF:DP	0/1:45,101:0.69:146
chr12	133032110	rs9706362	T	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr12	133032132	rs113386371	C	CGT	579.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr12	133067343	.	A	G	913.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	133067473	rs28435470	G	A	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	133102462	rs4883569	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr12	133104406	rs7135930	G	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr12	133104461	rs4883566	A	G	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	133104735	rs4883565	T	C	4533.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:84,183:0.69:267
chr12	133124753	rs79009737	G	A	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr12	133144040	rs369814131	C	T	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:57,156:0.73:213
chr12	133153281	rs10870473	A	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr12	133157835	rs140655645	ACCT	A	2478.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:29,62:0.68:91
chr12	133157851	rs3751307	G	A	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,70:0.65:108
chr12	133158280	rs3751306	G	T	6836.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:142,298:0.68:440
chr12	133158632	rs3751304	C	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr12	133158974	.	TTCCCCCTCCCCC	T	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.003;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=5.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.785;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr12	133158988	.	GTTCCCCTTCCCCGTTC	G	705.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.743;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-0.596;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr12	133159662	rs12831275	G	A	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=-0.704;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:10,28:0.74:38
chr12	133159846	rs56171012	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr12	133160238	rs7966712	G	C	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	133196696	rs151253585	C	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.912;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr12	133233705	rs5744889	T	C	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	133252796	rs4077170	C	G	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	133252947	rs5744759	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr12	133253310	rs5744757	A	G	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	133254083	rs5744750	T	C	7776.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	133256904	rs5744738	C	T	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	133263743	rs111877885	A	C	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	133263825	rs2075784	G	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	133264332	rs11538534	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	133266813	rs76557619	G	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.088;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr12	133267164	rs34659814	CT	C	238.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.00;QD=19.89;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	133272380	rs10781627	G	C	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	133277701	rs142585654	CAT	C	1240.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr12	133277983	rs7958567	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	133281462	rs10007	G	A	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	133287459	rs7486453	C	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	133287721	rs7973452	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	133294453	rs74723244	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,79:0.69:114
chr12	133294826	rs149250932	G	GC	1041.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	133295161	.	G	GT	1073	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=5;HapScore=1;MGOF=20;MMLQ=28;MQ=47.73;NF=35;NR=0;PP=1073;QD=31.5428571429;SC=CTGGGTGGGGGGTCCTGGGTG;SbPval=1.0;Source=Platypus;TC=47;TCF=46;TCR=1;TR=35;WE=133295169;WS=133295151;set=Platypus	GT:AD:AF:DP	0/1:12,35:0.74:47
chr12	133297103	rs10781631	T	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	133297182	rs10870498	A	G	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	133304146	rs10437912	C	T	2670.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=9.775;MLEAC=2;MLEAF=1.000;MQ=59.72;MQRankSum=-0.336;QD=39.28;ReadPosRankSum=0.184;SOR=2.874;set=HC	GT:AD:AF:DP	1/1:3,65:0.96:68
chr12	133304149	rs10437913	G	C	2639.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=10.700;MLEAC=2;MLEAF=1.000;MQ=59.71;MQRankSum=-0.344;QD=40.61;ReadPosRankSum=-1.244;SOR=3.164;set=HC	GT:AD:AF:DP	1/1:3,62:0.95:65
chr12	133304891	rs10870499	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	133306589	rs10781634	C	T	8142.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	133306920	.	CCCATCCATGACCAACTGCCGTGACCCCAGCAACAGCAACTCTTATACCCAAAACCTCCCCACT	C	1392.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.921;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.64;ReadPosRankSum=-1.640;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr12	133306927	.	AT	GC	1566	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=12;NR=25;PP=1566;QD=43.7694020233;SC=CGCCCCATCCATGACCAACTG;SbPval=0.62;Source=Platypus;TC=38;TCF=13;TCR=25;TR=37;WE=133306936;WS=133306917;set=Platypus	GT:AD:AF:DP	1/1:1,37:0.97:38
chr12	133310659	rs372085055	TA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-1.075;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:94,25:0.21:119
chr12	133311888	rs10781636	C	G	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	133311944	rs10747081	T	C	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	133312191	rs10781637	T	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	133327470	rs7304425	A	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	133331537	rs1132375	G	A	8056.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	133349620	rs3741483	C	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	133349893	rs3741484	A	G	545.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.32;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	133353168	.	C	T	602	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=1;HapScore=1;MGOF=30;MMLQ=28;MQ=51.58;NF=26;NR=0;PP=602;QD=24.4912004826;SC=GCCCCTCCAGCTCCTTCCTCC;SbPval=1.0;Source=Platypus;TC=31;TCF=29;TCR=2;TR=26;WE=133353176;WS=133353166;set=Platypus	GT:AD:AF:DP	1/1:5,26:0.84:31
chr12	133354203	rs12371815	C	A	3171.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:52,133:0.72:185
chr12	133354470	rs900444	T	C	7943.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr12	133360530	rs11147073	T	C	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	133360964	rs1009320	G	A	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	133363264	rs2242294	C	T	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	133365497	rs968522	A	C	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	133365920	rs11147076	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	133372395	rs4758905	A	C	6971.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	133378244	rs149456851	AC	A	3744.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:6,164:0.96:170
chr12	133378440	rs2291258	C	T	8107.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	133383923	rs10781653	T	C	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	133385188	rs3741488	A	T	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	133398439	rs66472368	CA	C	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.405;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=7.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.607;SOR=2.395;set=HC	GT:AD:AF:DP	0/1:38,42:0.53:80
chr12	133419808	rs4758950	G	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	133420533	.	C	CA	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.379;QD=4.00;ReadPosRankSum=0.599;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr12	133420743	rs143440255	CCCAGCAACA	C	2980.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	133423662	rs2306536	C	T	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	133423866	rs10747087	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	133423884	rs2306538	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	133432992	rs2306539	G	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	133433173	rs2062163	T	C	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	133433237	rs3816759	C	T	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	133435595	rs4758955	C	T	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	133438277	rs2306543	T	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	133439002	rs9943856	G	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	133439115	rs9943858	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	133447224	rs11147126	T	C	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	133454294	rs11147137	C	T	5090.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=26.51;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	133454354	rs149820641	TA	T	2504.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr12	133463775	rs145527630	C	T	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:70,136:0.66:206
chr12	133463969	rs113492159	G	A	4552.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	133501827	rs3052642	CTT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.744;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr12	133682655	rs710945	A	G	7598.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr12	133683261	rs905226	T	C	8508.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:2,327:0.99:329
chr12	133683280	rs905225	A	T	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	133696743	rs144074942	G	GAAC	988.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	133696754	rs55957232	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr12	133696785	rs11147239	C	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr12	133697130	rs2173970	CA	GG	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;JOINED;set=Intersection	GT:AD:AF:DP	0/1:171,82:0.32:253
chr12	133698537	rs11615248	G	C	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr12	133721452	rs11613951	T	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.437;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:96,44:0.31:140
chr12	133732624	rs3763151	C	T	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr12	133761207	rs137892024	ATTTG	A	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.21;ReadPosRankSum=0.687;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	133764701	rs11427950	C	CT	48.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.07;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	133767966	rs11147291	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	133768273	rs10870589	G	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr12	133768553	rs61960670	A	T	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:175,85:0.33:260
chr12	133768693	rs200581552	CTT	C	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.234;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	133770096	rs61960671	G	A	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr12	133770306	rs7960924	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	133778684	rs7963812	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr12	133778796	rs7975069	C	T	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr12	133780851	rs62644541	G	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:182,97:0.35:279
chr12	133787329	rs138369699	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr12	133795418	rs142613020	C	G	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.487;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=0.032;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:140,61:0.30:201
chr12	133797649	rs147515371	T	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr12	133803093	rs137878698	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr12	133803551	rs36146434	G	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr12	133808129	rs147259575	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:181,74:0.29:255
chr12	133810703	rs141475940	G	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:74,27:0.27:101
chr13	19751245	rs36216107	T	C	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr13	19752625	rs605109	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	19756026	rs783595	C	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	19775652	rs66950030	CA	C	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr13	19775755	rs115152530	A	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	19775867	rs114445450	G	A	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.24;QD=42.92;SOR=3.109;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	19775875	rs138429293	T	C	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.69;QD=45.52;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	19778557	rs61946465	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,33:0.85:39
chr13	19778601	rs141790008	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.736;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=7.031;MLEAC=1;MLEAF=0.500;MQ=45.81;MQRankSum=-3.434;QD=0.67;ReadPosRankSum=-1.477;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr13	19778703	.	A	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=5.727;MLEAC=1;MLEAF=0.500;MQ=49.51;MQRankSum=-2.141;QD=7.49;ReadPosRankSum=-3.247;SOR=2.409;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr13	19778703	.	AAC	TAA	151	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=28;MQ=45.19;NF=1;NR=4;PP=151;QD=40.8935749724;SC=AGTAAACATTAACAATTTAAC;SbPval=0.8;Source=Platypus;TC=21;TCF=6;TCR=15;TR=5;WE=19778713;WS=19778693;set=Platypus	GT:AD:AF:DP	0/1:16,5:0.24:21
chr13	19778705	.	C	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=49.78;MQRankSum=-1.903;QD=8.32;ReadPosRankSum=-3.351;SOR=1.819;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr13	19782601	rs183079967	G	A	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.29;QD=24.77;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	19782646	rs9512066	G	A	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	19933372	rs4771142	G	A	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	19941233	rs3002090	C	A	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	19949111	rs71197092	TC	T	57.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.61;QD=19.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	19949155	rs34247662	T	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.07;QD=25.18;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	19949218	rs35633897	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.75;QD=44.88;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	19949227	rs34936230	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.34;QD=41.48;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	19949262	rs34280326	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.73;QD=26.13;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	19949287	rs34088473	G	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	19961851	rs79520815	A	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr13	19961894	.	A	G	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=52.493;MLEAC=1;MLEAF=0.500;MQ=53.95;MQRankSum=-7.068;QD=12.42;ReadPosRankSum=-1.568;SOR=5.353;set=HC	GT:AD:AF:DP	0/1:51,29:0.36:80
chr13	19961897	.	G	A	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.144;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=45.331;MLEAC=1;MLEAF=0.500;MQ=53.78;MQRankSum=-7.631;QD=12.74;ReadPosRankSum=-1.395;SOR=5.136;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr13	19961903	.	C	T	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.777;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=48.857;MLEAC=1;MLEAF=0.500;MQ=53.34;MQRankSum=-7.942;QD=12.23;ReadPosRankSum=-3.199;SOR=5.283;set=HC	GT:AD:AF:DP	0/1:52,28:0.35:80
chr13	19961981	rs199807479	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=5.465;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-7.860;QD=2.10;ReadPosRankSum=2.326;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr13	19962036	.	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.100;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.917;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-6.102;QD=1.23;ReadPosRankSum=-3.537;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr13	19962038	.	T	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-6.810;QD=1.41;ReadPosRankSum=-3.003;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:44,4:0.08:48
chr13	19962055	rs9512903	G	A	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr13	20000506	rs111490861	G	T	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-6.118;QD=3.61;ReadPosRankSum=-1.537;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:98,17:0.15:115
chr13	20000508	.	A	C	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-5.876;QD=3.42;ReadPosRankSum=-1.664;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:99,18:0.15:117
chr13	20000511	rs202193643	A	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-6.050;QD=3.20;ReadPosRankSum=-0.955;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:105,18:0.15:123
chr13	20000598	.	C	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.428;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-7.917;QD=0.44;ReadPosRankSum=-7.127;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:210,35:0.14:245
chr13	20000613	rs76654056	AT	GA	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.080;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-6.831;QD=0.44;ReadPosRankSum=-4.935;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:201,13:0.06:214
chr13	20000630	rs2497218	T	C	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	20000702	rs4408395	G	C	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	20004798	rs2497068	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	20025406	rs2497236	C	T	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	20038714	rs34800894	CA	C	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	20039289	rs2497079	A	T	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	20041323	rs2497251	G	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	20041493	rs71092363	TA	T	417.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=0.308;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr13	20041563	rs2492391	C	T	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	20208232	rs2298004	C	T	126.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	20221516	rs35424555	A	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	20233804	.	CA	C	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.996;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr13	20236083	rs9551950	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	20236085	.	CT	C	306.73	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.08;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	20247171	rs4769866	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	20247238	rs55944747	GT	G	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-1.292;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr13	20251752	rs2290811	T	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	20277413	rs75085951	T	C	2170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=4.606;MLEAC=1;MLEAF=0.500;MQ=49.76;MQRankSum=-4.663;QD=7.26;ReadPosRankSum=0.680;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:176,123:0.41:299
chr13	20605603	rs9509009	T	C	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	20608354	rs11272380	T	TTTTCTTGAGGTG	1470.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.02;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	20633470	rs11432433	T	TA	267.14	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr13	20656138	rs11344087	CT	C	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-1.268;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr13	20716411	rs11617415	C	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	20716533	rs968566	G	T	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr13	20762872	rs55704559	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	20978504	rs4638418	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	20978664	rs3737036	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	21006475	rs7983215	T	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	21086599	rs7139733	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	21099828	rs9315667	A	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	21148408	rs4326897	G	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	21156999	rs9509289	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	21157257	rs35700311	GA	G	842.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	21170193	rs149283826	G	GTAAAA	307.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	21205124	rs35290473	TG	T	4744.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	21205140	rs1329519	A	T	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	21205192	rs9509307	G	A	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	21358061	rs17318617	A	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	21361513	rs4146442	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	21416945	rs2762995	G	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	21442945	rs9509410	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	21476997	rs7326480	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	21555544	rs870846	CT	GA	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	21555554	rs870848	G	A	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	21562482	rs10658032	C	CGGGGCG	353.74	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	21562832	rs2770928	C	T	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	21562948	rs558614	G	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	21620085	rs7317471	T	C	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr13	21721220	rs3742222	G	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	21729252	rs11147976	T	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.960;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr13	21729267	rs11147977	G	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.056;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr13	21729290	.	C	CAGTTTTCTTTGTTGCTGACATCTCGGATGTTCTGTCCATGTTTAAGGAACCTTT	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.703;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:70,11:0.14:81
chr13	21729718	rs9506626	G	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	21732094	rs4770121	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=25.47;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	21735998	rs17345690	T	C	1434.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.861;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.42;ReadPosRankSum=0.354;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:5,59:0.92:64
chr13	21736133	rs4561294	C	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	21742311	rs61950353	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=6.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.560;SOR=1.435;set=HC	GT:AD:AF:DP	0/1:140,29:0.17:169
chr13	21746453	rs2026600	T	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	21751005	rs9550717	G	C	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	21949361	rs1061232	T	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	21950709	rs41284199	T	C	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	21950934	rs9580093	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	21951016	rs9509669	A	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	21952907	.	CA	C	221.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=2.627;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr13	22083998	rs3814795	A	C	131.41	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:1,5:0.83:6
chr13	22088677	rs73156604	T	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	22096843	rs1200028	T	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	22140911	rs66467009	TA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.322;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr13	22178258	rs9509812	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	22178308	rs2761924	G	A	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	22255167	rs3818460	C	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	22255301	rs2274296	C	T	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	22275394	rs9509841	A	G	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	22275583	rs9509842	G	A	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr13	23251016	rs35856253	CT	C	2372.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	23253313	rs9506904	T	C	19075.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr13	23253548	.	C	CAACACCACTACCACCTTCACCATCACCATCACAACCACCACA	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-6.383;QD=2.03;ReadPosRankSum=2.090;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:170,1:0.01:171
chr13	23253552	.	A	ACTGCCACCACCATGACAACTGTTACCACCACCGGCATCGTCACCACCACCACCACCACCACAGTCG	2224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.024;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-2.087;QD=13.99;ReadPosRankSum=6.052;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:136,23:0.14:159
chr13	23279254	rs314874	G	A	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.741;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:521,116:0.18:637
chr13	23279279	rs314873	T	C	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.801;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:582,130:0.18:712
chr13	23808623	rs143561165	C	CTATT	2060.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	23808732	.	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.757;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:194,41:0.17:235
chr13	23808914	rs4769246	A	C	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=8.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.169;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:86,26:0.23:112
chr13	23824783	rs1800351	T	G	13286.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr13	23869771	rs41283950	G	C	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,49:0.83:59
chr13	23894736	.	CT	C,CTTT	1009.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.85;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.236;SOR=1.085;set=HC	GT:AD:AF:DP	1/2:5,16,48:0.23,0.70:69
chr13	23898454	rs9510700	C	T	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.910;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:169,54:0.24:223
chr13	23898664	rs1800354	A	G	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.976;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:124,36:0.23:160
chr13	23907677	rs2737701	C	T	15133.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr13	23915919	.	CTTTT	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=5.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.497;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr13	23928671	rs17325713	C	T	3765.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:39,162:0.81:201
chr13	23929095	rs1536365	T	C	2788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;ClippingRankSum=0.000;DB;DP=1082;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-1.567;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:856,217:0.20:1073
chr13	23930055	rs2031640	A	T	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.284;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:334,87:0.21:421
chr13	24234369	rs3751366	G	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=0.065;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr13	24234375	rs3751365	A	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.634;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.506;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr13	24234517	rs3751364	A	G	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-1.087;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:409,71:0.15:480
chr13	24242801	rs7329483	A	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr13	24243200	rs3751363	T	C	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.84;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr13	24243200	.	TGCTG	CGCTA,CGCTG	2596	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=18;MQ=60.0;NF=54,75;NR=92,126;PP=2596,293;QD=20;SC=AGGAGAGTGGTGCTGTCATCC;SbPval=0.51;Source=Platypus;TC=204;TCF=75;TCR=129;TR=146,201;WE=24243212;WS=24243190;set=Platypus	GT:AF:DP	0/1:0.72:204
chr13	24243204	rs3751362	G	A	3876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.29;ReadPosRankSum=-2.081;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:41,160:0.80:201
chr13	24384129	rs9510869	C	T	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:13,55:0.81:68
chr13	24410278	rs7982516	G	A	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.762;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:528,85:0.14:613
chr13	24411772	rs7333040	T	C	9776.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr13	24415734	rs9580766	G	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:21,66:0.76:87
chr13	24436230	rs1886972	C	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	24449166	.	AACACAC	A,AAC	1210.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;QD=40.36;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:0,9,21:0.30,0.70:30
chr13	24465743	rs3864971	A	G	31057.77	.	AC=2;AF=1.00;AN=2;DB;DP=1153;set=Intersection	GT:AD:AF:DP	1/1:0,1152:1.00:1152
chr13	24798120	rs1220547	T	C	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.460;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:402,102:0.20:504
chr13	24845179	.	A	ACTCTCTCT	1477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=61.89;MQRankSum=1.604;QD=26.39;ReadPosRankSum=2.323;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:9,47:0.84:56
chr13	24853048	.	T	C	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-1.396;QD=13.49;ReadPosRankSum=-2.796;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr13	24860240	rs9507300	A	G	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	24868752	rs34017703	TA	T	10703.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr13	24869025	rs7993660	A	G	5932.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr13	24869048	rs9553233	T	C	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=10.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.021;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:124,29:0.19:153
chr13	24869062	rs9553234	A	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.677;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:88,24:0.21:112
chr13	24890337	rs9511193	C	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.02;QD=44.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	24890339	rs9511194	A	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.02;QD=44.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	24890354	rs28661531	C	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	24890385	rs9511196	A	G	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	24892841	rs9580939	G	C	10048.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr13	24895240	rs200205073	G	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.58;QD=29.05;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	24895393	rs3751355	A	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.07;QD=32.98;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	24895559	rs3751357	A	G	17605.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.27;QD=29.59;SOR=2.243;set=HC	GT:AD:AF:DP	1/1:0,595:1.00:595
chr13	24895684	rs2862239	A	G	39109.77	.	AC=2;AF=1.00;AN=2;DB;DP=1415;set=Intersection	GT:AD:AF:DP	1/1:0,1411:1.00:1411
chr13	25000617	rs7571	C	G	8131.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr13	25005720	rs7996670	C	G	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	25005774	rs61947015	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	25008588	rs1372085	A	G	6739.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr13	25008630	rs1822135	A	G	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr13	25008903	rs9318536	G	T	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.01;QD=30.38;SOR=1.544;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	25009099	rs9511259	A	C	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	25009297	rs1050112	G	T	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	25009441	rs13428	C	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	25009485	rs1050110	C	G	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	25015967	rs61614647	C	T	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	25016008	rs59195808	C	T	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr13	25016092	rs55888616	C	T	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	25016142	rs56259964	T	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	25016163	rs56092924	C	T	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	25016202	rs57197471	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.53;QD=24.91;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	25016585	rs3816226	G	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr13	25016598	rs3816225	A	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	25016620	rs3816224	C	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	25016632	rs3816223	T	C	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	25016677	rs3816222	T	C	7516.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=45.28;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	25016687	rs4770683	C	T	7995.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=41.86;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	25016870	rs3816221	C	A	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	25020757	rs9511273	T	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	25020782	rs9318553	C	G	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	25020863	rs9318554	G	A	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	25020910	rs9507346	G	A	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	25021144	rs78060735	GTCT	G	10566.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr13	25021200	rs9318558	A	C	13798.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr13	25021211	rs7333856	C	T	13554.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:6,318:0.98:324
chr13	25021245	rs7334587	A	G	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:14,293:0.95:307
chr13	25021358	rs7139805	T	C	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:10,103:0.91:113
chr13	25027744	rs4770684	A	G	25511.77	.	AC=2;AF=1.00;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	1/1:2,976:1.00:978
chr13	25029083	rs3818938	G	A	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	25029218	rs2275660	C	T	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr13	25029401	rs7317188	C	G	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	25059023	rs4769362	C	T	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	25064748	rs61948880	C	T	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr13	25073399	rs34014909	G	GT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=4.220;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.569;QD=0.83;ReadPosRankSum=-2.495;SOR=1.156;set=HC	GT:AD:AF:DP	0/1:109,26:0.19:135
chr13	25169879	rs189735985	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.067;QD=0.74;ReadPosRankSum=-0.300;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:71,14:0.16:85
chr13	25263299	rs2070810	G	A	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	25263539	rs41305040	G	T	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.153;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:111,27:0.20:138
chr13	25264369	rs735770	T	C	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr13	25264666	rs7996324	G	T	8935.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:98,371:0.79:469
chr13	25264715	rs7996486	G	A	15344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.81;ReadPosRankSum=0.165;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:115,383:0.77:498
chr13	25264723	rs7997850	C	T	15507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.35;ReadPosRankSum=0.629;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:122,389:0.76:511
chr13	25264875	rs77066059	C	T	1532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=8.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-2.227;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:188,54:0.22:242
chr13	25264882	rs149105901	C	G	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=6.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-1.037;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:172,46:0.21:218
chr13	25265008	rs7986008	T	C	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	25265103	rs7981616	A	G	4630.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:72,208:0.74:280
chr13	25265139	rs2071490	T	C	6853.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:101,283:0.74:384
chr13	25265271	rs12872010	C	T	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-2.598;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:330,102:0.24:432
chr13	25266886	rs963985	C	T	6355.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:48,227:0.83:275
chr13	25266932	rs963984	C	A	9109.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:83,373:0.82:456
chr13	25267088	rs963983	C	T	9879.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:127,438:0.78:565
chr13	25268417	rs9553420	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,54:0.76:71
chr13	25268445	rs9553421	G	A	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:24,97:0.80:121
chr13	25268767	rs118100366	T	C	2405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=7.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.96;ReadPosRankSum=-0.684;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:9,64:0.88:73
chr13	25268776	rs2289898	A	G	2026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=12.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.19;ReadPosRankSum=-0.699;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:7,49:0.88:56
chr13	25283596	rs2289909	C	T	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.492;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:291,100:0.26:391
chr13	25283657	rs2289910	G	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.234;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:134,40:0.23:174
chr13	25285768	rs2722	G	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.354;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:130,30:0.19:160
chr13	25338586	rs9578783	A	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	25341365	rs142005435	A	AATC	3535.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:42,139:0.77:181
chr13	25355965	rs5802305	GT	G	1481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.656;QD=12.77;ReadPosRankSum=0.801;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:21,95:0.82:116
chr13	25356053	rs9707144	T	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.880;QD=1.26;ReadPosRankSum=-0.815;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:186,36:0.16:222
chr13	25363776	rs6490979	C	T	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	25367301	rs1158061	C	T	4379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.158;ClippingRankSum=0.000;DB;DP=1985;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-1.021;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:1598,364:0.19:1962
chr13	25370255	rs1446294	A	G	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	25399702	rs9553451	C	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr13	25399752	rs2121253	A	G	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	25400338	rs12869348	A	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:59,21:0.26:80
chr13	25404743	rs4769382	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	25417795	rs34260997	TATC	T	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.824;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:67,15:0.18:82
chr13	25419176	rs6490984	A	G	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	25442607	.	CAA	C	355.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=1.532;QD=11.86;ReadPosRankSum=0.390;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr13	25442921	rs2275938	A	C	8503.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr13	25453116	rs9553461	T	C	3509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.957;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.75;ReadPosRankSum=0.449;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:21,83:0.80:104
chr13	25453116	.	TTG	CTC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=75;NR=4;PP=2944;QD=20;SC=TAGGAAGACCTTGTGAGAAGG;SbPval=0.69;Source=Platypus;TC=98;TCF=92;TCR=6;TR=79;WE=25453126;WS=25453114;set=Platypus	GT:AD:AF:DP	1/0:19,79:0.81:98
chr13	25453118	rs79933264	G	C	3509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.599;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.50;ReadPosRankSum=0.336;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:21,87:0.81:108
chr13	25457207	rs9318911	T	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	25458232	rs34991318	AGTT	A	2449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=1.294;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:328,83:0.20:411
chr13	25458267	rs3831371	G	GAATT	2065.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-0.553;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:289,71:0.20:360
chr13	25458650	rs1530876	G	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=4.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.490;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:254,69:0.21:323
chr13	25460428	rs9511502	A	G	13531.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:1,515:1.00:516
chr13	25466774	rs9318917	T	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.073;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=7.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.708;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:119,36:0.23:155
chr13	25466955	rs3742165	T	C	1460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.504;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:453,119:0.21:572
chr13	25486287	rs2290276	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.528;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.119;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr13	25517938	rs113483335	C	T	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:24,111:0.82:135
chr13	25525370	rs9511519	C	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr13	25525481	rs56247049	G	A	20127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.354;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-2.196;QD=30.45;ReadPosRankSum=2.774;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:167,494:0.75:661
chr13	25525488	rs2167398	G	A	20695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.975;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-2.200;QD=29.65;ReadPosRankSum=2.505;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:177,521:0.75:698
chr13	25525544	rs41288282	T	C	11887.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:189,519:0.73:708
chr13	25525636	rs41288284	G	C	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:49,107:0.69:156
chr13	25670797	rs75760907	C	G	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=22.723;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-11.351;QD=1.27;ReadPosRankSum=0.442;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:316,33:0.09:349
chr13	25670801	.	T	TG	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DP=346;ExcessHet=3.0103;FS=24.723;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-11.061;QD=1.20;ReadPosRankSum=0.915;SOR=2.015;set=HC	GT:AD:AF:DP	0/1:309,34:0.10:343
chr13	25670803	rs76858651	A	G	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=24.544;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-11.009;QD=1.27;ReadPosRankSum=0.731;SOR=2.019;set=HC	GT:AD:AF:DP	0/1:306,34:0.10:340
chr13	25670813	rs3002212	C	T	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=13.290;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-9.990;QD=1.88;ReadPosRankSum=0.876;SOR=1.484;set=HC	GT:AD:AF:DP	0/1:304,41:0.12:345
chr13	25670851	rs75475407	A	G	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.443;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=5.464;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-12.567;QD=2.66;ReadPosRankSum=1.139;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:351,54:0.13:405
chr13	25670868	rs200859889	G	A	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-14.108;QD=2.76;ReadPosRankSum=1.187;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:395,59:0.13:454
chr13	25670873	rs77142265	A	G	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-14.142;QD=2.83;ReadPosRankSum=0.918;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:397,59:0.13:456
chr13	25670877	rs112107735	G	A	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.950;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-14.252;QD=2.77;ReadPosRankSum=0.591;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:402,61:0.13:463
chr13	25670907	rs76264750	C	A	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-15.645;QD=2.93;ReadPosRankSum=-1.773;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:431,71:0.14:502
chr13	25670919	rs76861216	A	G	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-16.208;QD=2.94;ReadPosRankSum=-1.254;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:422,65:0.13:487
chr13	25670953	rs74040928	G	A	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-18.165;QD=2.66;ReadPosRankSum=0.268;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:449,66:0.13:515
chr13	25670955	rs79397892	C	T	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-18.269;QD=2.65;ReadPosRankSum=0.493;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:447,65:0.13:512
chr13	25670978	.	C	T	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-17.460;QD=2.27;ReadPosRankSum=2.177;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:472,61:0.11:533
chr13	25670981	rs77476965	G	C	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-17.701;QD=2.39;ReadPosRankSum=1.389;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:465,64:0.12:529
chr13	25670984	rs11619791	C	T	11686.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:103,429:0.81:532
chr13	25670988	rs74564616	T	G	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-17.256;QD=2.61;ReadPosRankSum=0.675;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:463,67:0.13:530
chr13	25671008	rs76447065	C	T	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-15.472;QD=2.19;ReadPosRankSum=1.370;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:496,63:0.11:559
chr13	25671015	rs75314628	A	G	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-14.407;QD=1.87;ReadPosRankSum=1.238;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:487,61:0.11:548
chr13	25671027	rs78826513	A	G	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-12.372;QD=1.66;ReadPosRankSum=0.963;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:507,61:0.11:568
chr13	25671062	rs78534836	A	G	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;ClippingRankSum=0.000;DB;DP=691;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-13.393;QD=1.26;ReadPosRankSum=-0.865;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:615,70:0.10:685
chr13	25671080	rs76241879	A	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.866;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-16.587;QD=0.86;ReadPosRankSum=1.120;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:682,64:0.09:746
chr13	25671089	rs75281454	G	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-16.307;QD=0.72;ReadPosRankSum=0.712;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:724,67:0.08:791
chr13	25671097	rs140090397	A	AT	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=821;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-15.501;QD=0.59;ReadPosRankSum=1.077;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:748,67:0.08:815
chr13	25671122	rs79072440	C	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.148;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=3.653;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-14.688;QD=0.27;ReadPosRankSum=-5.244;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:835,75:0.08:910
chr13	25671168	rs78552667	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.661;ClippingRankSum=0.000;DB;DP=1010;ExcessHet=3.0103;FS=3.760;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-18.255;QD=0.58;ReadPosRankSum=-8.966;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:926,77:0.08:1003
chr13	25671172	rs79593984	C	A	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.066;ClippingRankSum=0.000;DB;DP=1017;ExcessHet=3.0103;FS=3.765;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-18.459;QD=0.69;ReadPosRankSum=-8.728;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:927,84:0.08:1011
chr13	25671200	rs76111404	C	T	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=1044;ExcessHet=3.0103;FS=3.375;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-23.100;QD=1.22;ReadPosRankSum=-1.935;SOR=1.228;set=HC	GT:AD:AF:DP	0/1:938,98:0.09:1036
chr13	25671206	rs76614854	A	G	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=3.379;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-23.198;QD=1.37;ReadPosRankSum=-0.856;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:928,100:0.10:1028
chr13	25671210	rs80062522	C	T	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DB;DP=1044;ExcessHet=3.0103;FS=5.075;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-23.000;QD=1.24;ReadPosRankSum=0.719;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:939,97:0.09:1036
chr13	25671214	rs201081849	T	G	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.761;ClippingRankSum=0.000;DB;DP=1039;ExcessHet=3.0103;FS=4.726;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-22.073;QD=1.32;ReadPosRankSum=0.030;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:927,104:0.10:1031
chr13	25671271	rs79246694	A	G	2406.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-18.528;QD=2.31;ReadPosRankSum=3.647;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:916,124:0.12:1040
chr13	25671272	rs376589131	AG	A	2473.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DB;DP=1046;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-18.478;QD=2.39;ReadPosRankSum=3.553;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:911,124:0.12:1035
chr13	25671274	rs76994938	C	T	2512.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DB;DP=1041;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-18.427;QD=2.44;ReadPosRankSum=3.466;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:906,124:0.12:1030
chr13	25671292	rs80261016	C	T	2535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260;ClippingRankSum=0.000;DB;DP=1008;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-20.377;QD=2.54;ReadPosRankSum=2.409;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:870,127:0.13:997
chr13	25671310	rs371130768	TTATGA	T	2374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=1039;ExcessHet=3.0103;FS=4.252;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-13.295;QD=2.34;ReadPosRankSum=1.481;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:896,120:0.12:1016
chr13	25671320	.	A	G	2424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DP=988;ExcessHet=3.0103;FS=5.584;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-12.565;QD=2.48;ReadPosRankSum=0.718;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:859,119:0.12:978
chr13	25671332	rs371570689	CA	C	1890.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=983;ExcessHet=3.0103;FS=6.013;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-10.059;QD=1.97;ReadPosRankSum=-0.746;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:850,109:0.11:959
chr13	25802491	rs4770813	A	G	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr13	25808286	rs9551188	A	C	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:31,102:0.77:133
chr13	25823441	rs62619824	C	T	17852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.71;ReadPosRankSum=-0.658;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:151,450:0.75:601
chr13	25823451	rs17082035	A	G	18147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.544;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.18;ReadPosRankSum=0.380;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:161,461:0.74:622
chr13	25823615	.	T	C	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.475;ClippingRankSum=0.000;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-1.555;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:332,97:0.23:429
chr13	25825889	rs4312169	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:71,26:0.27:97
chr13	25828354	rs116994084	G	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:17,58:0.77:75
chr13	25831888	rs7995033	T	C	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DB;DP=843;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.65;ReadPosRankSum=1.089;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:660,175:0.21:835
chr13	25832082	rs142779718	AAAAT	A	2472.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr13	25832831	rs149367120	CTAAAAT	C	3987.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:28,100:0.78:128
chr13	25836053	rs41290732	G	A	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:26,88:0.77:114
chr13	25840496	rs75290152	T	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr13	25848404	rs4387458	A	C	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	25876011	rs11556093	G	A	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.850;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.065;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:565,134:0.19:699
chr13	25886932	rs4341628	A	G	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr13	25887738	rs12866994	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=1.123;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:115,28:0.20:143
chr13	25887811	rs12871608	T	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-0.348;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:258,44:0.15:302
chr13	25893363	rs59567333	GTTTATA	G	3040.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	25899091	rs373891548	CT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=6.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.075;SOR=0.222;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr13	25901781	rs7997070	A	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	25911050	rs75002041	AT	A	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.077;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:141,53:0.27:194
chr13	26043182	rs7317185	A	C	17260.77	.	AC=1;AF=0.500;AN=2;DB;DP=1015;set=Intersection	GT:AD:AF:DP	0/1:245,769:0.76:1014
chr13	26104547	rs9581376	G	A	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:32,84:0.72:116
chr13	26107595	rs7319869	CT	TG	6378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.27;ReadPosRankSum=-0.009;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:47,157:0.77:204
chr13	26107606	rs7319993	C	T	5879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.44;ReadPosRankSum=-0.278;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:43,144:0.77:187
chr13	26108557	rs4257084	G	A	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:17,102:0.86:119
chr13	26125731	rs9581389	T	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr13	26127821	rs9740054	G	C	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:21,96:0.82:117
chr13	26128096	rs9742643	T	C	7032.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:91,316:0.78:407
chr13	26128128	rs7331675	CA	AG	7320.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;JOINED;set=Intersection	GT:AD:AF:DP	0/1:65,182:0.74:247
chr13	26133009	rs12862551	C	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr13	26137989	rs12871941	T	C	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr13	26144896	rs17729346	C	T	3084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=1257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=2.776;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:993,258:0.21:1251
chr13	26148727	rs12854617	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.580;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=13.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.862;SOR=0.087;set=HC	GT:AD:AF:DP	0/1:63,21:0.25:84
chr13	26148966	rs6491066	C	T	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr13	26155953	rs7335339	G	C	6434.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr13	26273385	rs6491088	G	C	11026.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr13	26273538	rs2296003	C	T	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	26411561	rs72194516	CCACA	C,CCA	496.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=0.091;SOR=0.859;set=HC	GT:AD:AF:DP	1/2:1,9,9:0.47,0.47:19
chr13	26436641	rs2249800	C	T	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr13	26445248	.	G	GT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-0.056;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:189,37:0.16:226
chr13	26501227	rs1185907	C	T	11464.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr13	26535625	rs9511998	G	A	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	26586775	rs2274135	C	T	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.009;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-1.582;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:106,38:0.26:144
chr13	26586788	rs9553698	A	C	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:26,84:0.76:110
chr13	26625047	rs4770911	G	A	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	26625135	rs4769452	A	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	26625172	rs4770912	G	A	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	26788114	rs301047	A	G	9990.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:109,401:0.79:510
chr13	26959593	rs7327769	T	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	26967477	rs71809345	C	CT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=4.020;QD=0.39;ReadPosRankSum=1.706;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:358,63:0.15:421
chr13	26974562	rs998692	G	A	13619.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr13	27239161	rs977351	A	G	7638.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:81,321:0.80:402
chr13	27250823	rs3764108	T	C	6459.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:65,291:0.82:356
chr13	27256728	rs9507763	C	G	14474.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:201,644:0.76:845
chr13	27664139	rs41300570	A	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.960;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-0.739;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr13	27690448	.	CAA	C	163.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=16.38;ReadPosRankSum=-0.126;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr13	27828529	.	A	ATTTTTTTT	580.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.26;ReadPosRankSum=-0.869;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr13	27829310	rs3094293	G	A	10702.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr13	27845284	rs9507866	C	A	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr13	27845548	rs9512592	C	G	6742.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:66,296:0.82:362
chr13	27997758	rs75326986	C	T	4162.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:39,168:0.81:207
chr13	27997985	rs33932496	GC	G	22654.73	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr13	27997999	rs3759433	G	A	8040.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:108,333:0.76:441
chr13	27998074	rs35458689	CT	C	704.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-2.362;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:8,53:0.87:61
chr13	28003997	rs9581848	C	T	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:17,94:0.85:111
chr13	28009851	rs7669	G	A	7452.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:72,315:0.81:387
chr13	28009920	rs1218825	G	C	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr13	28011158	rs74811644	G	A	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:27,87:0.76:114
chr13	28133956	rs373436911	TA	T	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.659;QD=1.91;ReadPosRankSum=0.190;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:289,113:0.28:402
chr13	28136989	rs11838661	A	G	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.303;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:173,53:0.23:226
chr13	28143229	rs8002697	A	G	18726.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr13	28155994	rs9512753	G	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	28195972	rs2232676	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.544;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.892;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:344,74:0.18:418
chr13	28196011	rs2232677	C	A	2059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.068;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:671,164:0.20:835
chr13	28367061	rs1231058	A	G	26188.77	.	AC=2;AF=1.00;AN=2;DB;DP=930;set=Intersection	GT:AD:AF:DP	1/1:0,926:1.00:926
chr13	28367275	rs3742112	G	C	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.008;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=2.024;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:395,113:0.22:508
chr13	28498323	rs9805632	G	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr13	28519354	rs2504220	A	C	6123.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr13	28537242	rs1805108	A	C	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr13	28537317	rs1805107	G	A	14085.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr13	28537537	rs2504212	T	G	9979.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr13	28539185	rs2481953	T	A	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr13	28541583	rs2481967	T	G	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr13	28562605	rs3897926	T	G	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:70,278:0.80:348
chr13	28589267	rs4073630	C	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.114;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr13	28589495	rs9579142	C	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=5.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-1.001;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:136,37:0.21:173
chr13	28589509	rs9579143	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=9.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.469;SOR=1.737;set=HC	GT:AD:AF:DP	0/1:121,25:0.17:146
chr13	28589662	rs4497507	C	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.86;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	28602226	rs60462219	AAG	A	4409.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:5,138:0.97:143
chr13	28602247	.	AGC	A	1201	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=18;MMLQ=28;MQ=60.24;NF=36;NR=49;PP=1201;QD=14.1882352941;SC=AGAGAGAGAGAGCAAACATCC;SbPval=0.53;Source=Platypus;TC=109;TCF=46;TCR=63;TR=85;WE=28602256;WS=28602237;set=Platypus	GT:AD:AF:DP	1/0:24,85:0.78:109
chr13	28607916	rs2491222	T	A	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	28607989	rs2491223	T	G	13644.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:1,475:1.00:476
chr13	28609825	rs2491227	A	G	15149.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:2,544:1.00:546
chr13	28609846	rs2491228	A	T	10942.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr13	28609991	rs2491229	T	C	7698.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=1.126;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	28609997	rs2491230	T	C	7870.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.78;SOR=1.100;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr13	28610183	rs2491231	A	G	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr13	28622356	rs2153000	G	A	9008.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr13	28624294	rs1933437	G	A	25280.77	.	AC=2;AF=1.00;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	1/1:0,940:1.00:940
chr13	28636084	rs7338903	G	A	8110.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr13	28644510	rs2387350	C	A	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	28647489	rs199898517	GAA	G,GA	2459.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.486;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.62;MQRankSum=1.998;QD=10.34;ReadPosRankSum=1.628;SOR=0.907;set=HC	GT:AD:AF:DP	1/2:49,71,118:0.30,0.50:238
chr13	28674797	rs117145034	G	A	4409.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:37,193:0.84:230
chr13	28712689	rs138028125	C	G	4758.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:69,219:0.76:288
chr13	28835527	rs5802469	T	TC	4776.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	28877629	rs5802470	A	AC	67.79	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr13	28882948	rs9579177	G	A	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:44,220:0.83:264
chr13	28883061	rs7993418	G	A	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:22,100:0.82:122
chr13	28885672	rs4771238	C	T	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.46;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	28886113	rs7328692	A	G	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	28893484	rs2296188	T	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	28893642	rs2296189	A	G	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:44,189:0.81:233
chr13	28942840	.	CT	C	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.835;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:117,59:0.34:176
chr13	28958955	rs3751395	C	A	1789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-1.290;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:33,94:0.74:127
chr13	28970917	rs7990486	C	T	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	28980150	rs5802481	A	AG	3529.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	29236489	rs1340815	C	T	4308.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:32,174:0.84:206
chr13	29238576	rs3737528	T	C	4101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-2.301;QD=18.99;ReadPosRankSum=-0.369;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:34,182:0.84:216
chr13	29274977	rs3831478	T	TA	735.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr13	29275102	rs947027	T	C	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	29275129	rs705423	C	T	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:16,90:0.85:106
chr13	29278063	rs34444192	T	TA	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.133;QD=1.80;ReadPosRankSum=-1.379;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:180,40:0.18:220
chr13	29278264	rs34310301	G	GA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.631;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.686;QD=2.01;ReadPosRankSum=0.370;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:92,26:0.22:118
chr13	29599092	.	A	G	8058.77	.	AC=1;AF=0.500;AN=2;DP=397;set=Intersection	GT:AD:AF:DP	0/1:80,313:0.80:393
chr13	29607948	rs17072576	G	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.936;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=11.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-1.013;SOR=2.541;set=HC	GT:AD:AF:DP	0/1:100,19:0.16:119
chr13	29674840	rs1536720	T	C	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr13	29674855	rs1536719	A	G	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr13	29855822	rs3751335	C	T	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr13	29898768	rs928661	A	C	14973.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:1,564:1.00:565
chr13	29898881	rs928660	A	G	23655.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,556:1.00:556
chr13	29898889	rs928659	G	C	22651.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.85;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr13	30014373	rs7337496	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	30054139	rs73154405	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:18,61:0.77:79
chr13	30071310	rs2258198	G	T	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	30075114	rs882953	C	T	7313.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr13	30077088	rs2482096	C	T	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr13	30090404	rs2989592	T	C	7810.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	30091516	rs2490267	T	C	13819.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr13	30091714	rs2482089	G	A	8767.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr13	30091819	rs2482090	G	C	10490.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr13	30098215	rs2776957	C	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	30098226	rs2776958	A	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	30346188	rs2234416	A	C	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.830;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:207,79:0.28:286
chr13	30351248	rs35681461	T	TA	12420.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr13	30351266	rs3818368	A	G	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-1.432;QD=3.40;ReadPosRankSum=0.289;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:348,118:0.25:466
chr13	30804797	rs73163470	A	G	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.73;ReadPosRankSum=0.175;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:10,39:0.80:49
chr13	30805627	rs202087	A	G	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	30829757	rs11348486	CA	C	1089.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.143;QD=10.90;ReadPosRankSum=0.338;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:17,83:0.83:100
chr13	31036642	rs3742305	C	G	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-2.126;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:448,133:0.23:581
chr13	31036681	rs1929606	A	G	11690.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr13	31037903	rs2249825	G	C	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr13	31195409	.	G	GT	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.100;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:212,46:0.18:258
chr13	31231513	rs7983138	C	T	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:19,118:0.86:137
chr13	31231806	rs7984952	T	C	13838.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:190,571:0.75:761
chr13	31233063	rs3742302	G	A	14200.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:185,603:0.77:788
chr13	31287811	rs9508825	T	C	6535.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:59,274:0.82:333
chr13	31287978	.	G	GGTGT	1113.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=62.01;MQRankSum=-3.738;QD=3.56;ReadPosRankSum=2.784;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:264,49:0.16:313
chr13	31287979	rs147763360	G	GTA	6887.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:68,203:0.75:271
chr13	31287995	rs58228189	G	A	1393.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-1.306;QD=5.28;ReadPosRankSum=0.013;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:213,51:0.19:264
chr13	31287996	rs9315035	C	T	8600.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:52,211:0.80:263
chr13	31309571	rs59918130	TAAAAAA	T	958.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=35.51;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	31309830	rs4769055	C	A	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr13	31318020	rs4360791	G	A	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	31318308	rs3803277	C	A	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:4,215:0.98:219
chr13	31318401	rs3803278	T	C	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.466;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.422;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr13	31480827	rs9531945	A	G	6856.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr13	31513931	rs2225505	T	A	9499.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:152,400:0.72:552
chr13	31531009	rs12857479	G	A	6203.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:78,260:0.77:338
chr13	31531195	rs6560988	T	C	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr13	31540569	.	CTTTT	C,CTTTTT	454.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.513;QD=12.29;ReadPosRankSum=-0.969;SOR=1.501;set=HC	GT:AD:AF:DP	1/2:6,12,19:0.32,0.51:37
chr13	31715455	rs3761866	A	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:81,31:0.28:112
chr13	31722620	rs35594388	TA	T	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.000;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:87,43:0.33:130
chr13	31725374	rs3736861	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.763;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.116;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr13	31725617	rs2146895	C	T	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	31728666	rs2274018	G	A	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=1.025;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:117,40:0.25:157
chr13	31728703	rs2274019	T	C	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=2.263;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:199,60:0.23:259
chr13	31729889	rs3818350	A	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr13	31733057	rs41292151	G	A	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:21,78:0.79:99
chr13	31735759	rs2280059	G	A	21123.77	.	AC=1;AF=0.500;AN=2;DB;DP=1230;set=Intersection	GT:AD:AF:DP	0/1:310,913:0.75:1223
chr13	31789169	rs35344913	CT	C	1644.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.433;QD=13.59;ReadPosRankSum=0.045;SOR=0.683;set=HC	GT:AD:AF:DP	1/1:15,106:0.88:121
chr13	31796969	rs2147515	G	C	7249.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr13	31821093	rs9542300	T	C	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.321;QD=8.83;ReadPosRankSum=3.502;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:39,70:0.64:109
chr13	31821240	rs9564692	C	T	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=2.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=2.222;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:450,97:0.18:547
chr13	31821992	rs4943266	T	C	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	31835011	rs73172886	T	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.431;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:78,14:0.15:92
chr13	31835375	rs4943289	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr13	31843598	rs1924817	A	G	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	31848535	rs912600	G	A	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	31850714	rs1028751	G	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	31850989	rs4065552	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	31891561	rs1041074	T	C	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	31891746	rs1041073	G	A	12603.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr13	31903834	rs1060709	G	T	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	32336040	rs1536635	C	T	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:45,109:0.71:154
chr13	32339382	rs12870532	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:20,88:0.81:108
chr13	32340193	rs35564049	T	TA	3398.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	32349017	rs3848100	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr13	32360547	rs7325513	A	G	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.263;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:581,155:0.21:736
chr13	32360691	rs140904878	T	TAA	1140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.492;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=5.993;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=4.73;ReadPosRankSum=1.806;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:175,66:0.27:241
chr13	32606162	rs112681499	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.000;QD=16.95;ReadPosRankSum=1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr13	32606164	rs77392398	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.000;QD=16.95;ReadPosRankSum=0.842;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr13	32660137	rs423932	T	G	13391.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr13	32676114	rs364995	A	G	14265.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr13	32698544	rs629265	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	32723799	rs204558	C	T	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	32731667	rs11409421	T	TA	287.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	32747468	rs2073998	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr13	32758834	rs798971	A	G	11365.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr13	32776253	rs2520704	A	T	6981.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr13	32776306	rs2762035	A	C	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	32776318	rs2762036	T	C	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	32776603	rs2428249	T	C	12093.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.58;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr13	32776603	.	TG	CA,CG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=26;MQ=60.0;NF=119,141;NR=101,117;PP=2944,339;QD=20;SC=GCGTGTCACTTGCCCTCTTGT;SbPval=0.54;Source=Platypus;TC=261;TCF=141;TCR=120;TR=220,258;WE=32776612;WS=32776593;set=Platypus	GT:AF:DP	0/1:0.84:261
chr13	32776604	rs138780336	G	A	5660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.59;ReadPosRankSum=3.182;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:46,243:0.84:289
chr13	32785086	rs798981	G	A	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr13	32786416	rs798983	T	A	23200.77	.	AC=2;AF=1.00;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	1/1:0,882:1.00:882
chr13	32786614	rs798984	A	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	32798225	rs9533917	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.324;QD=1.19;ReadPosRankSum=1.566;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:79,15:0.16:94
chr13	32798235	rs5802638	T	TA	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.050;QD=1.44;ReadPosRankSum=0.063;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr13	32805318	.	C	A	3491.77	.	AC=1;AF=0.500;AN=2;DP=181;set=Intersection	GT:AD:AF:DP	0/1:40,139:0.78:179
chr13	32811607	rs2806639	G	A	7221.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:96,306:0.76:402
chr13	32813818	rs45467296	T	C	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.995;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:115,34:0.23:149
chr13	32823882	rs2806630	G	A	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	32825913	rs2806632	A	G	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.592;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:245,79:0.24:324
chr13	32825941	rs2806633	C	A	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.431;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:337,108:0.24:445
chr13	32828553	rs2157961	A	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.425;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:118,45:0.28:163
chr13	32832149	rs2520686	T	C	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=1.498;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:204,57:0.22:261
chr13	32832350	rs2806636	A	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr13	32834538	rs5802640	C	CTATCT	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.637;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:97,17:0.15:114
chr13	32848907	rs147812266	TC	T	699.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:78,33:0.30:111
chr13	32849345	rs183269	A	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.480;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.031;QD=1.65;ReadPosRankSum=0.598;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr13	32849359	.	C	CA	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.069;QD=8.82;ReadPosRankSum=1.010;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr13	32866221	rs6561216	A	G	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	32868498	rs2301386	T	A	6081.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:77,266:0.78:343
chr13	32882912	rs34528008	G	GT	832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.951;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:216,76:0.26:292
chr13	32883052	rs206103	G	A	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.224;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:181,47:0.21:228
chr13	32884653	rs206110	G	T	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	32884771	rs206111	T	C	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.543;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:439,132:0.23:571
chr13	32885654	rs445909	T	C	5259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.255;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:391,157:0.29:548
chr13	32885658	rs371193	G	A	5272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-0.602;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:379,156:0.29:535
chr13	32905265	rs206073	G	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	32906729	rs144848	A	C	11856.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:170,513:0.75:683
chr13	32912299	rs543304	T	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:98,45:0.31:143
chr13	32913055	rs206075	A	G	14492.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr13	32915005	rs206076	G	C	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr13	32920844	rs206080	T	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	32929387	rs169547	T	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr13	33052294	rs380627	C	T	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	33101731	rs391612	T	C	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr13	33222831	rs2301389	G	A	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	33226282	rs34522910	G	GT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.626;QD=0.71;ReadPosRankSum=-0.817;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr13	33232334	rs7335546	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	33232435	rs2301393	A	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	33253136	rs11355777	GA	G	2567.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	33268573	rs561056	T	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	33275733	rs34184885	G	GCA	718.70	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr13	33309563	rs17516382	C	G	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	33315186	rs2320469	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	33315189	rs2320470	G	T	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.80;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	33315206	rs733487	G	A	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.50;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	33320054	rs4942867	A	G	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr13	33332648	rs3752474	G	T	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr13	33333876	rs7988089	A	C	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr13	33338507	.	CTGAT	C	1770.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr13	33344241	rs112309957	AT	A	1647.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr13	33349235	rs67068819	C	CTTTTT	1383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.000;QD=27.13;ReadPosRankSum=-0.640;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:12,39:0.76:51
chr13	33349341	rs3492	A	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	33590851	rs2772364	T	C	24525.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	1/1:0,895:1.00:895
chr13	33627760	rs7323281	A	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr13	33627825	rs9536312	C	T	3327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=8.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=-0.389;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:90,142:0.61:232
chr13	33627829	rs570875	T	G	9302.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.92;SOR=1.628;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr13	33627858	rs9536313	C	G	5664.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:127,240:0.65:367
chr13	33628138	rs9536314	T	G	11626.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:139,465:0.77:604
chr13	33628193	rs9527025	G	C	14253.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:173,579:0.77:752
chr13	33628239	rs9527026	G	A	14900.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:214,631:0.75:845
chr13	33629657	rs9527029	C	T	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:34,102:0.75:136
chr13	33635463	rs648202	T	C	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr13	33635835	rs649964	T	C	8818.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr13	33635939	rs650439	T	A	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	33637913	rs34137141	C	CA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.493;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:133,39:0.23:172
chr13	33680854	rs642899	T	G	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:34,143:0.81:177
chr13	33686844	rs34128539	G	GA	4234.73	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:83,224:0.73:307
chr13	33700374	rs1980781	T	G	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:68,147:0.68:215
chr13	33701347	rs2764617	C	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr13	33703656	rs495680	T	C	18744.77	.	AC=1;AF=0.500;AN=2;DB;DP=1066;set=Intersection	GT:AD:AF:DP	0/1:265,797:0.75:1062
chr13	33704065	rs3742321	T	C	12541.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:155,508:0.77:663
chr13	33739427	rs17596765	T	G	5139.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:88,223:0.72:311
chr13	33739629	rs797232	G	A	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr13	33741559	rs797229	C	T	2552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=-0.706;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:45,105:0.70:150
chr13	33923314	rs9597272	T	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.247;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:223,69:0.24:292
chr13	35252882	rs9572094	T	C	6979.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:96,297:0.76:393
chr13	35618991	rs7996448	A	G	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	35619385	rs9543121	A	G	3758.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:52,152:0.75:204
chr13	35738430	rs9543506	A	G	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	35745239	rs2120822	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.570;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:98,34:0.26:132
chr13	35806549	rs9565113	T	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.743;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.300;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr13	35926398	.	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.936;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:144,34:0.19:178
chr13	35926497	rs9565205	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.625;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr13	36124764	rs12584746	G	A	6121.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:63,253:0.80:316
chr13	36141009	rs9544667	G	A	5820.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.46;ReadPosRankSum=-0.749;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:2,218:0.99:220
chr13	36141009	.	GTA	ATA,ATG	2535	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=19;MQ=59.93;NF=133,102;NR=72,55;PP=396,2535;QD=2.10132298804;SC=CATTTTGTGTGTACAAATTTT;SbPval=0.64;Source=Platypus;TC=214;TCF=134;TCR=80;TR=205,157;WE=36141019;WS=36140999;set=Platypus	GT:AF:DP	0/1:0.96:214
chr13	36141011	rs35877639	A	G	3652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=0.046;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:54,169:0.76:223
chr13	36220292	rs3818424	T	C	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	36224051	rs200267946	TACTGGG	T	1356.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	36242513	rs41292209	C	A	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.478;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:91,32:0.26:123
chr13	36244990	rs3794387	A	G	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:89,223:0.71:312
chr13	36379735	.	C	T	3622.77	.	AC=1;AF=0.500;AN=2;DP=193;set=Intersection	GT:AD:AF:DP	0/1:49,143:0.74:192
chr13	36401746	rs9574698	A	G	6766.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:98,281:0.74:379
chr13	36401909	rs9574699	T	C	7867.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:112,325:0.74:437
chr13	36402426	rs2296645	A	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.020;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:109,28:0.20:137
chr13	36402475	rs2296646	G	A	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	36700338	rs144431309	TTA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=3.167;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:57,8:0.12:65
chr13	36745029	rs1328641	C	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	36747798	rs1410633	C	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	36940028	rs1041140	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	37007040	rs4245378	A	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	37007491	rs71438101	A	G	301.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.77;QD=37.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	37007494	rs145868841	GTTGA	G	292.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	37015242	rs17188012	C	G	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	37401917	rs11285105	GT	G	1643.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	37439964	rs3748305	C	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	37526560	rs6563506	G	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	37546280	rs9576146	G	C	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	37569200	rs2323165	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	37580139	rs1127446	G	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	37581051	rs9576154	T	G	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	37583831	rs9469	G	A	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	37584838	rs7317750	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	37598113	rs4943441	A	G	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	37600199	rs4941856	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	37600284	rs9576155	G	A	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	37621528	rs1199983	A	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	37625601	rs1543738	T	C	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	37625770	rs5802853	A	AG	1219.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr13	37679268	rs9576175	G	T	2654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=890;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.403;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:681,208:0.23:889
chr13	38154959	rs9576307	G	C	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	38156706	rs2274082	T	G	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	38164445	rs1006416	G	A	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	38166357	rs9603229	T	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	38237872	rs2985171	A	G	6099.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr13	38266000	rs7329237	G	T	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	38320594	rs35278654	TA	T	1019.84	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:8,61:0.88:69
chr13	38357471	rs3904512	G	A	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr13	38924083	rs2231330	A	T	13269.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr13	38924263	rs2231332	T	C	16246.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr13	38930783	rs2455410	G	A	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	38930838	.	C	CAA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.99;ReadPosRankSum=1.189;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr13	38930893	rs2481880	C	T	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	38931144	rs9548318	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	38931650	rs34489703	G	GTT	3581.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr13	38932194	rs2150470	G	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.825;QD=12.10;ReadPosRankSum=2.314;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr13	38932207	rs67284300	TA	T	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.959;QD=7.99;ReadPosRankSum=0.539;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr13	38932545	rs11381230	G	GT	957.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.424;QD=17.10;ReadPosRankSum=0.524;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:5,51:0.91:56
chr13	38932648	rs2485786	C	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	38932681	rs2485785	G	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	39262057	rs1868464	G	A	15643.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr13	39263023	rs12874397	C	T	8376.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr13	39263714	rs2496423	T	C	46118.77	.	AC=2;AF=1.00;AN=2;DB;DP=1702;set=Intersection	GT:AD:AF:DP	1/1:4,1690:1.00:1694
chr13	39338612	rs2442370	T	C	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	39420663	rs9548502	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,52:0.72:72
chr13	39420923	rs9548503	T	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:43,84:0.66:127
chr13	39420971	rs9548504	A	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr13	39422624	rs9548505	C	T	8320.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:157,374:0.70:531
chr13	39424253	rs9548506	CT	GC	8304.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;JOINED;set=Intersection	GT:AD:AF:DP	0/1:96,206:0.68:302
chr13	39430314	rs9548509	C	T	5066.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:98,227:0.70:325
chr13	39430443	rs9548510	G	A	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,79:0.68:116
chr13	39433606	rs9532292	A	G	7155.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:141,303:0.68:444
chr13	39435552	rs36084034	C	CG	1077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=50.941;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.940;SOR=4.742;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr13	39446869	rs9532295	G	A	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:46,155:0.77:201
chr13	39448476	rs4943614	T	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr13	39450139	rs1945510	A	C	3673.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:83,151:0.65:234
chr13	39450583	rs67517056	T	TA	552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=1.102;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:28,39:0.58:67
chr13	39452235	rs1540131	T	C	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:32,84:0.72:116
chr13	39454771	rs41306664	G	C	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.548;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:324,108:0.25:432
chr13	39546530	rs8000175	C	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	39598616	rs61945763	G	A	7413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.677;QD=15.81;ReadPosRankSum=0.222;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:146,323:0.69:469
chr13	39608335	.	T	TA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.09;ReadPosRankSum=0.291;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:567,95:0.14:662
chr13	39618366	.	TTG	T	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.015;QD=2.80;ReadPosRankSum=0.345;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:70,26:0.27:96
chr13	39622075	rs9532318	T	C	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.894;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:79,31:0.28:110
chr13	40229744	rs9603589	C	T	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:316,155:0.33:471
chr13	40230204	.	A	G	2192.77	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:56,93:0.62:149
chr13	40233404	rs7330515	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr13	40233691	rs7330016	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr13	40238162	rs4636783	C	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.211;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:62,14:0.18:76
chr13	40238175	rs67976778	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.546;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr13	40238387	rs4566029	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr13	40239139	rs7991151	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr13	40252190	rs4941939	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr13	40253901	rs4941940	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr13	40256252	rs74842409	C	T	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr13	40293288	rs5803008	AT	A	3569.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	40293601	rs199617496	CTCTT	C	2110.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:18,54:0.75:72
chr13	40297684	rs7985075	C	T	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	40298620	rs58666375	CT	C	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.754;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:23,33:0.59:56
chr13	40298805	rs9532421	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	40325310	rs4245396	C	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:58,24:0.29:82
chr13	41185309	rs7331212	G	A	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,89:0.68:131
chr13	41382711	rs17849654	A	T	1359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=7.274;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-1.327;QD=4.84;ReadPosRankSum=1.441;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:198,83:0.30:281
chr13	41382807	rs60754171	T	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.178;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:86,25:0.23:111
chr13	41515286	rs1056820	T	A	3265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.212;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:462,192:0.29:654
chr13	41517985	rs3764056	A	G	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=0.783;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:69,36:0.34:105
chr13	41523876	rs9525435	T	C	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.105;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:370,137:0.27:507
chr13	41525586	rs3736953	A	G	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-1.065;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:168,68:0.29:236
chr13	41533052	rs7799	T	C	23396.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:0,853:1.00:853
chr13	41639425	rs78988439	TAA	T	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.092;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr13	41675332	.	TA	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-1.048;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr13	41705495	rs584594	A	G	9217.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr13	41706800	rs9566703	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	41767338	rs2039134	A	G	10159.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.14;QD=44.95;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr13	41767341	rs2039135	A	G	10110.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.76;QD=44.54;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	41791440	rs2274903	T	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	41797601	rs2026469	A	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	41807950	rs3751344	T	C	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	41834578	rs66465270	GT	G	1448.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.871;MLEAC=2;MLEAF=1.000;MQ=60.55;MQRankSum=0.569;QD=19.06;ReadPosRankSum=0.220;SOR=1.995;set=HC	GT:AD:AF:DP	1/1:5,71:0.93:76
chr13	41834744	rs2297555	C	T	17725.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr13	41835076	rs3215932	T	TA	2453.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:8,113:0.93:121
chr13	41835089	rs1332940	T	G	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	41837220	rs3818721	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	41893105	rs2065498	T	G	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	41902939	rs3812896	T	C	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	41947712	.	G	GT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.070;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=4.392;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.468;QD=1.48;ReadPosRankSum=-0.711;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr13	41948051	rs9525478	G	C	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	41949804	rs6560982	G	T	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	42041193	rs45453494	T	C	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:54,125:0.70:179
chr13	42042873	rs150442518	ACT	A	646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.216;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:592,78:0.12:670
chr13	42043086	rs2324791	C	G	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	42044508	rs396963	A	G	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr13	42144853	rs9562321	A	G	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:319,134:0.30:453
chr13	42161863	rs2282210	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:72,36:0.33:108
chr13	42164636	rs200938861	T	TC	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.540;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=8.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=2.672;SOR=2.059;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr13	42189232	rs3862741	C	G	5407.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	42266889	rs7140090	T	C	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=1.075;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:113,34:0.23:147
chr13	42275473	rs7322461	A	G	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	42277675	rs9315858	A	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.019;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=8.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.272;SOR=2.205;set=HC	GT:AD:AF:DP	0/1:52,25:0.32:77
chr13	42303934	.	G	GAC	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-0.805;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr13	42306139	rs9315861	T	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr13	42306411	rs9315862	T	C	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr13	42335135	rs9566843	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr13	42335222	rs9566844	T	C	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:56,142:0.72:198
chr13	42352285	rs12864636	T	C	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.61;ReadPosRankSum=-0.079;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,36:0.86:42
chr13	42361743	rs112297676	T	TACAC	1201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=31.62;ReadPosRankSum=-0.904;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr13	42385421	rs138075452	C	T	1930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.024;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:524,142:0.21:666
chr13	42385446	rs9562353	T	C	1846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.393;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:546,151:0.22:697
chr13	42407759	rs9315868	C	T	7704.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:127,334:0.72:461
chr13	42442546	rs3742262	A	G	4456.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:100,206:0.67:306
chr13	42465490	rs7332372	C	T	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	42465713	rs9562362	C	T	7560.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:138,332:0.71:470
chr13	42481712	rs2003064	C	T	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr13	42486383	rs35273694	TTA	T	1618.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr13	42701717	rs605371	A	G	8653.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr13	42701739	rs670676	A	T	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr13	42701803	rs957255	G	A	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	42703682	rs3742261	T	C	8221.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:2,299:0.99:301
chr13	42733380	.	C	CTTTTTTTT	479.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=39.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	42734389	rs10492444	C	G	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:43,81:0.65:124
chr13	42748118	rs140630635	T	TGC	1626.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:113,48:0.30:161
chr13	42748136	rs9590674	T	C	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=5.006;QD=8.52;ReadPosRankSum=0.395;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:151,63:0.29:214
chr13	42761399	rs17598471	A	G	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-2.722;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:150,47:0.24:197
chr13	42763533	rs55656510	A	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr13	42764439	rs1170119	T	C	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	42764564	rs7324235	C	G	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-1.242;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:375,103:0.22:478
chr13	42772717	rs9533031	G	T	5574.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:98,245:0.71:343
chr13	42772774	rs35298264	GT	G	736.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=7.02;ReadPosRankSum=1.078;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:48,57:0.54:105
chr13	42773629	rs4942097	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.81;ReadPosRankSum=0.799;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr13	42780148	.	C	CT	739.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.380;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:139,81:0.37:220
chr13	42780398	rs9594704	T	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,25:0.31:81
chr13	42783012	rs168329	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	42793298	rs9315899	G	T	5663.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:92,238:0.72:330
chr13	42793479	rs180870	G	A	5197.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:89,216:0.71:305
chr13	42793766	rs11277175	AGGTTTTTC	A	3385.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:31,85:0.73:116
chr13	42794004	rs347382	G	A	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr13	42799301	.	G	A	447.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:64,25:0.28:89
chr13	42803341	rs545602	T	C	4248.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:71,184:0.72:255
chr13	42869720	rs3835266	A	AG	1424.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr13	42882762	rs238314	A	G	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	42888230	rs9566957	A	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr13	43155168	rs2277438	G	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr13	43155443	rs2277439	G	A	3302.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:68,149:0.69:217
chr13	43358176	rs1324422	G	A	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.620;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:198,66:0.25:264
chr13	43358309	.	C	CT	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.347;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:47,37:0.44:84
chr13	43358437	rs1853637	C	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:51,16:0.24:67
chr13	43360772	.	T	TAA	1385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=0.230;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:36,59:0.62:95
chr13	43462352	rs45505295	T	C	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:49,105:0.68:154
chr13	43463299	rs1323864	T	C	5678.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:100,252:0.72:352
chr13	43469157	rs1128105	G	A	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr13	43469211	rs1359184	G	A	10856.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr13	43474371	rs4942174	C	T	7288.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr13	43491778	rs61066479	G	GAA	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.493;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.305;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr13	43537240	rs1054813	A	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.82;SOR=5.376;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	43537240	.	AAAAAAC	GAAAAAC,GAAAAAT	926	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=6;HapScore=1;MGOF=31;MMLQ=25;MQ=60.0;NF=45,9;NR=2,0;PP=926,29;QD=20.4419406925;SC=AATGGAAGGAAAAAAACTGGA;SbPval=0.59;Source=Platypus;TC=47;TCF=45;TCR=2;TR=47,9;WE=43537254;WS=43537230;set=Platypus	GT:AF:DP	0/1:1.00:47
chr13	43537246	rs9562444	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.711;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr13	43537277	rs34758461	A	AAG	2263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.61;ReadPosRankSum=0.861;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:22,70:0.76:92
chr13	43544819	rs66702221	GA	G	1842.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.978;QD=12.45;ReadPosRankSum=1.933;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:47,101:0.68:148
chr13	43544964	rs9567077	G	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr13	43566099	rs942311	T	A	5779.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:93,246:0.73:339
chr13	43566373	rs3825511	A	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	43597706	rs17553284	C	T	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.321;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.212;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:143,38:0.21:181
chr13	43597865	rs12015	A	G	3816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.780;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:701,243:0.26:944
chr13	43597932	rs2281777	C	G	4277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180;ClippingRankSum=0.000;DB;DP=1220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.069;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:914,304:0.25:1218
chr13	43597977	rs2281778	C	G	6573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=-1.241;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:636,208:0.25:844
chr13	43597980	rs2281779	G	A	6524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;ClippingRankSum=0.000;DB;DP=819;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-0.938;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:617,200:0.24:817
chr13	43597995	rs2281780	G	T	2785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-1.162;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:506,175:0.26:681
chr13	43681427	rs61651931	G	GA	871.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=4.425;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.418;QD=9.91;ReadPosRankSum=0.559;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:34,54:0.61:88
chr13	43788031	rs1044753	C	T	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	43788158	rs703207	G	A	13605.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr13	43798077	rs9533433	A	C	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:42,162:0.79:204
chr13	43839494	rs4306408	G	A	17700.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr13	43843812	rs730210	A	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	43872419	rs4451860	C	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	43872451	rs141332734	C	CA,CAA	1061.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.000;QD=13.97;ReadPosRankSum=0.396;SOR=0.845;set=HC	GT:AD:AF:DP	1/2:14,39,23:0.51,0.30:76
chr13	43930337	rs2281713	A	G	7436.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr13	43986771	rs2296041	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	44433700	rs1562216	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	44948295	rs201663302	T	TG	2245.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.83;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	44948302	rs199705926	GA	G	2186.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.59;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	44964723	rs2281848	C	T	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	44969907	rs1467624	G	A	12089.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr13	45010283	rs1555781	T	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	45010616	rs7997320	G	A	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr13	45090478	rs1336163	A	C	8999.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr13	45090580	rs1336164	C	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	45517486	.	AAC	A	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=5.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=1.264;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:53,10:0.16:63
chr13	45556056	rs148833607	T	TCATGTTTAACATAAAACATAAAA	1668.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	45563464	rs1140993	G	C	11643.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr13	45710748	rs9534041	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr13	45723823	rs141823802	G	GT	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr13	45724053	rs9534044	A	G	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr13	45725763	rs13378297	A	T	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.344;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.53;ReadPosRankSum=-0.654;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:22,47:0.68:69
chr13	45726046	rs71664538	CT	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=11.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=2.645;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr13	45768759	rs9534059	G	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:35,83:0.70:118
chr13	45826876	rs7982845	A	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	45826994	rs139972349	A	AT	1447.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:45,79:0.64:124
chr13	45841502	rs7331090	G	A	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:42,83:0.66:125
chr13	45912634	rs9595305	T	C	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	45914957	rs2234216	T	C	12844.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr13	45973231	rs11330086	GA	G	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.787;QD=3.71;ReadPosRankSum=2.773;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:89,51:0.36:140
chr13	45976349	rs11617888	G	A	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:164,67:0.29:231
chr13	45980223	rs34513916	AT	A,ATT	665.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.543;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.771;SOR=1.133;set=HC	GT:AD:AF:DP	1/2:9,14,40:0.22,0.63:63
chr13	45982934	rs6561227	G	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	45985583	rs12872200	T	G	1615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.347;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:371,109:0.23:480
chr13	45985608	rs7997155	T	A	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.940;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.498;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:259,83:0.24:342
chr13	45985705	rs4941527	G	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:16,63:0.80:79
chr13	46039407	rs11619408	G	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr13	46050519	rs2986001	T	C	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=3.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=1.101;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:156,47:0.23:203
chr13	46060467	rs374009383	CG	C	3394.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:29,89:0.75:118
chr13	46060473	rs113621277	AC	A,AGGGAGAGGGAGC	4042.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=136;set=Intersection	GT:AF:DP	1/2:0.86,0.14:103
chr13	46060474	.	C	A	855.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.468;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=4.555;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=0.957;QD=7.31;ReadPosRankSum=2.262;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:89,28:0.24:117
chr13	46066163	rs3014948	T	C	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	46067593	rs2985959	G	A	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:157,72:0.31:229
chr13	46077301	rs3014959	G	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	46077381	rs3014960	G	A	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	46085699	rs2985969	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	46085864	rs2985970	A	G	10231.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr13	46093284	rs3818456	C	G	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:37,90:0.71:127
chr13	46098994	rs3014966	T	C	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	46099171	rs144497765	C	T	1737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.236;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:401,122:0.23:523
chr13	46099243	rs2985984	A	G	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr13	46103935	rs2274285	A	G	11596.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr13	46104130	rs2274286	G	C	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr13	46105021	rs66498730	AT	A	1927.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:23,58:0.72:81
chr13	46108643	rs3014901	T	C	2082.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	46108853	rs3014902	TG	CA	14718.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr13	46115731	rs1536207	C	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:83,34:0.29:117
chr13	46124290	rs2860345	T	A	2444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.224;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:474,161:0.25:635
chr13	46137837	rs3014917	T	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:118,46:0.28:164
chr13	46137883	rs60300837	G	A	1379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.437;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-1.002;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:229,84:0.27:313
chr13	46148855	rs747652	A	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr13	46148943	rs140782618	TG	T	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=8.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=0.978;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:59,49:0.45:108
chr13	46170609	rs3014939	C	T	16983.77	.	AC=1;AF=0.500;AN=2;DB;DP=1135;set=Intersection	GT:AD:AF:DP	0/1:345,777:0.69:1122
chr13	46170719	rs142875900	CCCAGATACTCTTCCTCCT	C	22400.73	.	AC=1;AF=0.500;AN=2;DB;DP=944;set=Intersection	GT:AD:AF:DP	0/1:278,583:0.68:861
chr13	46287153	rs9316154	A	C	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:30,89:0.75:119
chr13	46288145	rs7317245	A	G	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:103,172:0.63:275
chr13	46358320	rs10578981	CAACA	C	1150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.40;ReadPosRankSum=-2.199;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:12,30:0.71:42
chr13	46541673	rs9534264	T	A	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr13	46550061	rs11428563	G	GT	2055.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	46562935	rs1134071	A	G	11184.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr13	46616462	rs3783200	A	C	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	46619026	rs962694	T	C	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	46619316	rs3736944	T	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	46627677	rs1049669	T	C	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	46629944	rs1926447	A	G	9512.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr13	46629995	rs1926446	C	A	7677.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr13	46641324	rs151045790	TA	T	2588.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	46641466	rs9316179	A	G	15051.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:2,586:1.00:588
chr13	46641481	rs7337140	T	C	15628.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr13	46648094	rs3742264	C	T	10285.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr13	46656669	rs2296642	A	G	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	46708291	rs4941543	T	C	18655.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr13	46717047	rs9534341	T	C	6212.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:100,278:0.74:378
chr13	46717246	rs2182485	T	C	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr13	46722703	rs10631906	C	CTTAA	1116.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr13	46728771	rs4258501	T	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr13	46728924	rs2296122	C	T	5019.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:114,230:0.67:344
chr13	46836201	rs2764598	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	46917428	rs41284169	C	A	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=4.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.198;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:165,52:0.24:217
chr13	46917469	rs2478046	G	A	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=3.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.021;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:261,77:0.23:338
chr13	46919092	rs259738	A	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr13	46919095	rs10682466	T	TTG	429.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr13	46919762	rs259735	T	G	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.105;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:131,45:0.26:176
chr13	46928784	rs259697	G	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.747;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.830;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:113,42:0.27:155
chr13	46930372	rs9526171	T	C	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:18,67:0.79:85
chr13	46930536	rs181977	C	A	1776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.014;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:421,128:0.23:549
chr13	46937097	rs11843301	A	C,ATC	963.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.112;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.07;ReadPosRankSum=2.088;SOR=2.093;set=HC	GT:AD:AF:DP	1/2:3,15,8:0.58,0.31:26
chr13	46942081	rs2476664	A	G	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.271;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:94,32:0.25:126
chr13	46942835	rs41284175	T	C	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-3.056;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:176,62:0.26:238
chr13	46946157	rs1408184	C	T	2037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.733;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:339,127:0.27:466
chr13	47256065	rs45439193	C	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	47256071	rs71077914	T	TTGTGTG,TTGTGTGTGTGTGTGTGTG	1248.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.03;MQRankSum=0.000;QD=59.46;ReadPosRankSum=0.666;SOR=1.292;set=HC	GT:AD:AF:DP	1/2:1,7,13:0.33,0.62:21
chr13	47260054	rs842381	T	C	10432.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr13	47261970	rs842375	T	C	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr13	47273458	rs706621	G	C	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	47279375	rs11483731	C	CT	3449.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:10,159:0.94:169
chr13	47279454	rs842387	A	G	7421.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr13	47279680	rs3832915	A	AT	2961.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr13	47286523	rs2275679	G	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr13	47289958	rs9526223	C	T	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr13	47297352	rs7319836	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:158,61:0.28:219
chr13	47302934	rs3742273	T	A	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	47308109	rs2298086	A	G	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	47315984	rs3742274	T	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	47358540	rs8192889	T	C	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.541;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:137,53:0.28:190
chr13	47408902	rs58145637	A	AT	1099.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=9.540;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.309;QD=5.21;ReadPosRankSum=-0.329;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:130,81:0.38:211
chr13	47409034	rs6314	G	A	3674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=843;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-1.689;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:609,227:0.27:836
chr13	47469940	rs6313	G	A	7087.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:129,292:0.69:421
chr13	47470824	rs6312	C	T	8641.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr13	48523567	rs17425881	T	C	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	48547467	rs7320366	A	T	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	48563008	rs6561424	G	A	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	48563246	rs6561425	A	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	48571213	rs8001509	C	T	10682.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr13	48575207	rs11316376	GA	G	11688.73	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr13	48575292	rs9567972	C	T	17176.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr13	48653864	rs5803423	CA	C	1218.70	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:13,78:0.86:91
chr13	48664556	.	T	TA	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DP=512;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.141;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:387,79:0.17:466
chr13	48669064	rs3809330	C	T	9943.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr13	48828102	rs11415000	A	AT	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.783;SOR=1.930;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr13	48830601	rs3818455	A	C	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:152,69:0.31:221
chr13	48878271	rs2854351	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	48878292	rs2252544	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr13	48916895	rs520342	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=2.112;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr13	48919358	rs198617	T	G	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	48921884	rs198616	A	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	48923011	rs4151477	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr13	48947469	rs185587	G	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	48953655	rs11449461	C	CA	452.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.481;QD=14.60;ReadPosRankSum=-0.797;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr13	48955659	rs4151540	C	CAA	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr13	48955676	rs2804086	T	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	49033747	rs198580	G	A	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	49034022	.	A	ATTTCTTTCT,ATTTCT	9111.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=314;set=Intersection	GT:AF:DP	1/1:1.00:284
chr13	49051012	rs3020646	C	T	9065.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr13	49051481	rs3092904	T	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.115;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr13	49077088	rs9332043	C	CA	4940.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.995;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.863;QD=9.12;ReadPosRankSum=-0.408;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:372,170:0.31:542
chr13	49089223	rs9316388	T	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr13	49089620	rs3215827	CT	C	397.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr13	49107241	rs7997110	T	C	26763.77	.	AC=2;AF=1.00;AN=2;DB;DP=1037;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,1037:1.00:1037
chr13	49684341	rs3834947	C	CT	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=1.509;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:67,28:0.29:95
chr13	49684436	.	CA	C	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.654;QD=2.05;ReadPosRankSum=-0.749;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:155,56:0.27:211
chr13	49752915	rs1407826	A	G	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	49765596	rs189708457	A	G	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:33,115:0.78:148
chr13	49833774	rs4942809	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr13	49839889	rs9535182	A	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr13	49839979	rs7326191	G	A	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-1.005;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:181,49:0.21:230
chr13	49840024	rs6561512	A	G	10824.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr13	49852377	rs2274150	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:75,31:0.29:106
chr13	49852430	rs2274149	T	G	4717.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:92,186:0.67:278
chr13	49865727	rs143390986	G	GCC	816.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.850;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:89,26:0.23:115
chr13	49865748	rs6561514	A	G	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	49866869	rs3751418	G	C	2279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.094;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,103:0.71:146
chr13	49885216	rs912547	A	G	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr13	49934045	rs9535208	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr13	49951027	rs111664849	G	GTAGATAGATAGATAGA,GTAGATAGATAGATAGATAGA	4178.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=86;set=Intersection	GT:AF:DP	1/2:0.78,0.22:81
chr13	49951142	rs8002829	T	C	8875.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr13	49951193	rs8002858	T	C	9212.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr13	49951310	rs8002153	G	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	50007393	rs7998660	C	T	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	50008112	rs3764091	G	A	6894.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr13	50008301	rs3764090	A	G	19504.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr13	50035151	rs721457	G	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	50035208	rs2077848	G	A	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.227;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	50038080	rs12429813	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	50050620	rs7998427	A	G	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	50054308	rs4142285	G	A	10206.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr13	50054346	rs7996852	G	T	14518.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=1.155;set=HC	GT:AD:AF:DP	1/1:0,525:1.00:525
chr13	50057097	rs2057413	G	A	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr13	50057633	rs11619265	A	G	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	50070244	rs370049093	GGGGC	G	1128.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.52;QD=41.80;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	50080847	rs2031532	A	G	9597.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr13	50087142	rs2247119	T	C	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr13	50087464	rs5803468	AT	A	377.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.747;QD=11.80;ReadPosRankSum=-1.543;SOR=0.343;set=HC	GT:AD:AF:DP	1/1:4,28:0.88:32
chr13	50092127	rs66480424	TACTC	T	3000.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	50095127	rs3765526	A	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	50096127	rs2274277	C	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr13	50098407	rs144805189	TAAAAC	T	1206.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=43.10;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	50100090	rs7322908	T	A	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	50100320	rs7321952	A	G	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=38.57;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	50100389	rs7323493	T	C	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	50100627	rs10546233	GTT	G	3145.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	50100637	rs371713260	ATATT	A	2930.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	50100647	rs61960012	C	T	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	50100667	rs6561533	G	A	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	50102810	rs1046295	G	A	13252.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr13	50108252	rs7317982	T	C	7867.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr13	50115669	rs1536195	C	T	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	50121211	rs1570883	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	50121311	rs3039280	C	CA,CAA	4199.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.789;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.216;QD=22.10;ReadPosRankSum=-2.425;SOR=1.219;set=HC	GT:AD:AF:DP	1/2:16,34,140:0.18,0.74:190
chr13	50121511	rs1570884	A	G	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	50123622	rs3751384	G	C	10141.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr13	50126382	rs2274278	G	A	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	50129615	rs2274284	A	G	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr13	50134358	rs12146924	T	C	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	50141345	rs4942848	G	A	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	50205025	rs3803185	T	C	15939.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr13	50242696	rs7999786	C	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.93;QD=25.73;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	50244041	rs9535292	T	C	9175.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr13	50260905	rs6561552	T	C	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr13	50275515	rs7446	C	T	10373.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr13	50276679	rs12877931	C	T	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	50295961	rs9535309	A	G	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	50296026	rs9535310	T	C	5555.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr13	50296115	rs1127021	C	T	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr13	50299648	rs3215711	AC	A	6067.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:4,250:0.98:254
chr13	50366743	rs201124891	A	AG	685.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=29.81;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	50464734	rs61747168	A	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=7.562;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-4.689;QD=5.75;ReadPosRankSum=0.024;SOR=0.190;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chr13	50464739	rs61747167	G	A	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=8.474;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-4.585;QD=4.98;ReadPosRankSum=0.298;SOR=0.205;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr13	50465577	rs75540113	A	G	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.799;QD=3.29;ReadPosRankSum=1.496;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:523,161:0.24:684
chr13	50466911	rs34448316	G	A	6102.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:128,263:0.67:391
chr13	50467124	rs7316930	T	C	15684.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr13	50495555	rs9568357	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr13	50501980	rs11617754	G	A	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=2.795;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:185,70:0.27:255
chr13	50570774	rs3116591	G	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr13	51287408	rs41284836	C	G	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:183,80:0.30:263
chr13	51397440	rs9563002	C	A	9109.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr13	51417535	rs898861	G	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	51484356	rs2274069	C	T	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	51528055	rs200721645	A	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.004;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:173,49:0.22:222
chr13	51530414	rs1328360	A	T	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	51594741	rs1328361	T	G	1444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.098;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.634;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:216,82:0.28:298
chr13	51600806	rs77187004	C	T	7293.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:149,327:0.69:476
chr13	51603768	rs9568497	T	C	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.725;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.719;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:463,132:0.22:595
chr13	51796468	rs7320388	T	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	51825548	rs3825409	T	C	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:44,115:0.72:159
chr13	51929375	rs9596506	T	C	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	51938576	rs9316536	G	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr13	51953840	rs3818360	C	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	51956122	rs9526753	T	C	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	52277693	rs9535738	G	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr13	52293532	rs912097	T	C	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	52313195	rs1885854	C	T	5809.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:78,256:0.77:334
chr13	52333955	rs147876825	TTTAACCCAAATCA	T	5110.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:73,131:0.64:204
chr13	52342206	rs1058142	G	A	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	52342241	rs141642989	GTCT	G	1618.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.012;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:147,50:0.25:197
chr13	52343391	rs10676	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:56,14:0.20:70
chr13	52343499	rs11374211	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=2.038;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:23,21:0.48:44
chr13	52343551	rs9596572	A	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr13	52345637	rs2296028	G	C	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:74,154:0.68:228
chr13	52345781	rs57280031	T	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr13	52345838	rs2296027	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:100,42:0.30:142
chr13	52351037	rs2296026	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:14,71:0.84:85
chr13	52373814	rs9535761	G	C	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	52391341	rs975504	C	T	8895.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr13	52425587	rs36141261	A	AT	3781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=2.232;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=14.66;ReadPosRankSum=0.730;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:45,213:0.83:258
chr13	52440130	rs1054515	A	G	2199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-0.787;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:332,136:0.29:468
chr13	52482399	rs35577493	CAG	C	5128.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:62,128:0.67:190
chr13	52511275	rs200831452	GAA	G	979.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.892;QD=15.79;ReadPosRankSum=0.222;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:19,43:0.69:62
chr13	52511362	rs9535795	C	G	5795.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:94,235:0.71:329
chr13	52511606	rs2282057	G	A	8944.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:121,370:0.75:491
chr13	52515354	rs1801249	A	G	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:82,172:0.68:254
chr13	52520704	rs2296246	C	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr13	52520719	rs41292784	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr13	52523808	rs732774	C	T	7312.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:129,296:0.70:425
chr13	52524488	rs1061472	T	C	4544.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:66,180:0.73:246
chr13	52524560	rs9526811	C	T	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr13	52542796	rs2147363	T	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	52544805	rs1801244	C	G	8675.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:141,367:0.72:508
chr13	52544978	rs3742288	T	G	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr13	52548140	rs1801243	A	C	11358.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:1,419:1.00:420
chr13	52585548	rs2277448	G	T	10973.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr13	52585591	rs148013251	T	TCGGCG	7889.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	52593352	.	C	CT	61.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.282;QD=6.81;ReadPosRankSum=0.812;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr13	52602919	rs3825528	A	C	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr13	52603194	rs3742289	G	T	12811.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr13	52603775	rs3742291	C	T	11058.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr13	52603896	rs17402034	G	A	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=4.116;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.274;QD=4.88;ReadPosRankSum=0.100;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:233,90:0.28:323
chr13	52605154	rs141049018	C	G	7216.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:173,298:0.63:471
chr13	52645995	rs117288113	C	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-1.993;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:128,41:0.24:169
chr13	52657287	rs9563091	A	G	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:10,137:0.93:147
chr13	52657689	rs12585654	T	G	2118.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.84;SOR=3.113;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	52663491	rs9535861	A	G	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr13	52684801	rs71665641	TAC	T	6409.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	52684817	rs9535865	C	T	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=-1.868;QD=7.48;ReadPosRankSum=-0.049;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:111,63:0.36:174
chr13	52701490	rs3076657	A	ACTT	11977.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr13	52701637	rs1886544	T	G	16514.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:1,615:1.00:616
chr13	52701782	rs1886543	T	C	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	52707240	rs3368	C	G	11080.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr13	52707751	.	T	TCACACACA,TCACACACACA	2386.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=67;set=Intersection	GT:AF:DP	1/2:0.49,0.51:51
chr13	52709742	rs2408611	G	A	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	52709938	rs2296351	A	C	12439.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr13	52710044	rs2296350	T	C	5181.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	52710058	rs2296349	T	G	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr13	52717950	rs3783242	C	T	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	52718050	rs3837575	C	CT	3861.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	52952928	rs113543720	CA	C	1558.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:31,84:0.73:115
chr13	52958319	.	CA	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.260;QD=3.76;ReadPosRankSum=-0.251;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr13	52971893	rs3803264	G	A	9786.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:163,416:0.72:579
chr13	52989863	rs1056335	C	T	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:44,81:0.65:125
chr13	53007886	.	G	GA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=5.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.630;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:96,18:0.16:114
chr13	53009048	rs11148252	C	T	1623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=8.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-1.180;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:35,70:0.67:105
chr13	53010353	.	AAC	A,AACACACACAC	877.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.82;ReadPosRankSum=0.257;SOR=0.804;set=HC	GT:AD:AF:DP	1/2:2,15,17:0.44,0.50:34
chr13	53029770	rs72440971	CGCGGTGGCGGTGGCGGTG	C	7417.73	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:141,191:0.58:332
chr13	53030565	rs9536079	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr13	53035783	rs7337054	T	C	13981.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr13	53035925	rs7335867	A	G	14328.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr13	53036398	rs3803262	A	G	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr13	53233194	rs9536223	A	T	394.78	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr13	53240884	rs9316580	G	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	53254082	rs4539485	T	C	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	53254296	rs7986540	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	53277833	.	C	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.906;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=8.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.057;SOR=1.489;set=HC	GT:AD:AF:DP	0/1:138,30:0.18:168
chr13	53278067	rs3742297	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr13	53287023	rs2147692	G	C	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr13	53297962	rs61959657	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr13	53313112	rs113584845	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:107,44:0.29:151
chr13	53602970	rs2298229	A	G	6983.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:114,290:0.72:404
chr13	53608479	rs2298230	G	A	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.632;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:185,65:0.26:250
chr13	53608632	rs2298231	C	T	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=3.191;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:97,34:0.26:131
chr13	53608757	rs2298232	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr13	53616051	rs201799697	G	A	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:34,93:0.73:127
chr13	58299434	rs5803842	G	GA	1185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.971;QD=13.32;ReadPosRankSum=0.058;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:21,68:0.76:89
chr13	60385060	rs10665848	A	ATTAC	3156.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	60407054	rs341514	G	A	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	60582651	rs339540	C	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr13	60590299	rs2762134	C	T	6432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.73;ReadPosRankSum=-1.426;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:65,167:0.72:232
chr13	60590307	rs12429010	C	T	6172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.12;ReadPosRankSum=-2.221;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:60,152:0.72:212
chr13	60617060	rs2800294	A	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr13	60971593	rs9538679	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	61013615	rs9528136	G	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	61058724	rs7329723	G	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	61058808	.	A	AT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=7.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-1.050;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr13	61084936	rs370448567	CT	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=2.360;QD=1.91;ReadPosRankSum=-1.437;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr13	61102575	rs148917045	GATA	G	16463.73	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:168,411:0.71:579
chr13	61103438	rs9538735	A	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr13	61109375	rs41293436	A	C	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:192,97:0.34:289
chr13	61986918	rs3812872	C	A	19217.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr13	61988107	rs4281600	T	G	9413.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr13	61988153	rs3812873	C	G	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:51,106:0.68:157
chr13	63745832	rs298898	G	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,64:0.57:112
chr13	66540575	rs3843944	C	T	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=3.312;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chr13	67800935	rs9571740	G	A	12302.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr13	67802339	rs8000556	A	T	8936.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr13	70314433	rs1559465	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr13	70314807	rs7331253	A	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr13	70370853	rs17727950	A	G	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr13	70371071	.	C	A	10275.77	.	AC=1;AF=0.500;AN=2;DP=661;set=Intersection	GT:AD:AF:DP	0/1:209,450:0.68:659
chr13	70535355	rs9592668	T	A	1701.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	70681305	rs9564649	G	A	3415.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:92,150:0.62:242
chr13	70681873	rs3751428	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr13	72014625	rs11391038	C	CT	447.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;QD=19.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	72038653	rs915052	C	A	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	72440658	.	TGCCGCC	T	5159.73	.	AC=2;AF=1.00;AN=2;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=44.10;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	73293249	.	C	CA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-1.148;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr13	73301480	rs9652239	G	A	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr13	73301655	rs1465897	A	C	7126.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr13	73301728	rs1465896	T	C	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr13	73301804	rs1465895	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,28:0.34:83
chr13	73302157	rs11350390	CT	C	16356.73	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr13	73302261	rs2277417	G	A	5114.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:144,249:0.63:393
chr13	73302481	rs4885034	G	A	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	73309278	rs58536774	T	G	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:367,202:0.36:569
chr13	73309347	rs9543106	C	T	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr13	73317585	rs9600019	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr13	73317847	rs34245891	C	CT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.113;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr13	73329358	rs10887	G	A	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:406,200:0.33:606
chr13	73335383	rs9573028	G	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr13	73335820	.	T	C	3762.77	.	AC=1;AF=0.500;AN=2;DP=589;set=Intersection	GT:AD:AF:DP	0/1:382,200:0.34:582
chr13	73343039	rs2196979	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.963;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr13	73350079	rs4883918	T	C	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:179,108:0.38:287
chr13	73366704	rs11148921	A	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.351;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr13	73402075	rs9564921	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:94,63:0.40:157
chr13	73409508	.	TA	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=7.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-1.353;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr13	73410370	rs117674558	T	G	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:73,158:0.68:231
chr13	73505177	rs9564931	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr13	73636910	rs113148226	A	AGT,AGTGT	3868.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=186;set=Intersection	GT:AF:DP	1/2:0.63,0.29:129
chr13	73638125	rs4885061	G	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.76;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	73650064	.	C	G	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.808;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-2.160;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:137,52:0.28:189
chr13	73650112	rs9573097	C	A	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.78;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	74289799	rs6562780	A	T	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr13	74339104	rs3764134	G	T	10474.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr13	75860804	rs534538	C	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	75866284	rs9600455	G	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr13	75873787	rs2297207	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:103,55:0.35:158
chr13	75876389	rs2297208	G	A	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:140,61:0.30:201
chr13	75880667	rs2297209	G	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr13	75884216	rs1062087	C	T	6200.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr13	75884290	rs2297203	G	A	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr13	75887127	rs2274757	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr13	75894015	rs2274758	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr13	75898596	rs2297210	C	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr13	75901749	rs2297206	G	T	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	75910909	rs693134	C	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.526;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:54,29:0.35:83
chr13	75910950	rs9573525	T	G	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-1.712;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:95,69:0.42:164
chr13	75915215	rs80163254	T	C	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=0.656;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr13	75915216	rs80143047	A	C	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.777;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:110,38:0.26:148
chr13	75915217	rs76964739	T	A	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=0.843;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:111,38:0.26:149
chr13	75915250	rs35018625	T	TA	1667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=-1.259;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:151,63:0.29:214
chr13	75915859	rs9888477	C	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr13	75923536	rs3831188	T	TA	140.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr13	75936519	rs7983969	C	G	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr13	75936636	rs17254379	G	A	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:319,146:0.31:465
chr13	76055397	rs9573565	C	T	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr13	76055820	rs7327548	G	C	10145.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.01;ReadPosRankSum=-0.580;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:1,389:1.00:390
chr13	76100639	rs1050235	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr13	76102137	rs71127549	GCACACACA	G,GCACA	1195.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;QD=41.23;SOR=2.147;set=HC	GT:AD:AF:DP	1/2:0,19,10:0.66,0.34:29
chr13	76124151	rs8192738	C	T	12132.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr13	76135028	rs4884008	T	A	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	76140814	rs56945758	CT	C	1451.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr13	76164313	rs35178906	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.848;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr13	76169234	rs7330411	G	A	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	76210742	rs2224797	A	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chr13	76378459	rs625033	T	C	12296.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr13	76409436	rs2273997	A	G	5134.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr13	76410725	rs2273996	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	76412589	.	TAA	T	951.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.15;ReadPosRankSum=-0.918;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:4,41:0.91:45
chr13	76417101	rs920701	C	T	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	76419421	rs3832886	AT	A	1782.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	76423248	rs7986131	T	C	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	76429619	rs4885354	C	A	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	76445155	rs9544057	G	C	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	76445189	rs9600566	A	G	3332.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:68,144:0.68:212
chr13	76445316	rs9600567	C	T	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:62,118:0.66:180
chr13	76457148	rs7987971	A	G	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	76457183	rs9530477	T	C	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	77522725	rs67524409	GACTT	G	10450.73	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:156,268:0.63:424
chr13	77522925	rs588702	T	C	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	77527707	rs9530614	A	G	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:117,215:0.65:332
chr13	77531361	rs41287034	C	T	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:197,96:0.33:293
chr13	77565972	rs654196	A	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	77569901	rs605153	G	A	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	77574518	rs58476086	T	TA	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.690;QD=7.18;ReadPosRankSum=0.152;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr13	77589725	rs599115	A	C	4623.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:3,187:0.98:190
chr13	77625946	rs117836900	C	T	5074.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:172,227:0.57:399
chr13	77725106	rs9574006	C	A	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	77732333	rs3861128	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	77739291	rs9318468	A	T	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	77750765	.	T	TA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.26;ReadPosRankSum=1.598;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:142,27:0.16:169
chr13	77751892	rs4885445	C	T	9240.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr13	77792099	rs374242789	TA	T	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.551;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:82,28:0.25:110
chr13	77818100	rs35429706	C	CA	2311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-0.273;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:63,163:0.72:226
chr13	77835520	rs11436373	T	TA	2378.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:15,124:0.89:139
chr13	78142653	rs11325667	GA	G	745.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	78146301	rs678047	C	T	7626.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr13	78177082	rs7490669	T	A	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	78178451	rs6563011	C	T	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	78183087	rs9593240	A	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	78183167	rs912293	G	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	78191824	rs4142585	G	T	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	78192207	rs9574090	T	C	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	78211386	rs72078326	CAT	C	1279.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.99;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	78216873	rs1053985	A	G	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	78272267	rs201380414	T	TGG	2885.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	78272276	rs71102772	G	GC	2725.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	78317054	rs372604248	CT	C	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.667;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.117;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:116,44:0.28:160
chr13	78475313	rs5351	T	C	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	78477674	rs5348	A	G	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr13	79177291	rs9601093	G	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr13	79194670	rs9593348	G	A	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr13	79194750	rs35712557	TGA	T	5887.73	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:107,170:0.61:277
chr13	79209382	rs9805409	A	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr13	79216178	rs9601108	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr13	79216418	rs7327732	A	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr13	79766188	rs2988039	A	G	5666.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:134,254:0.65:388
chr13	79894736	rs3187338	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:93,41:0.31:134
chr13	79894877	rs71696319	CA	C,CAA	650.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.478;QD=10.85;ReadPosRankSum=-1.121;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:7,17,36:0.28,0.60:60
chr13	79915389	rs7981067	G	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.017;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-1.819;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr13	79916792	rs374223990	T	TA	1553.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	79916973	rs3742118	A	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr13	79918323	rs2274555	T	C	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr13	79927157	rs11341470	CA	C	491.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr13	79928477	rs9574411	A	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr13	79929183	rs9530900	G	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr13	79929326	rs9530901	G	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:267,120:0.31:387
chr13	79932617	rs7994560	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	79939606	rs7319252	C	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr13	79939921	rs11279869	TAAGAGA	T	1457.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr13	79940150	rs3831152	CTG	C	960.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr13	79940811	rs7327603	T	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:81,44:0.35:125
chr13	79943166	rs10710579	TA	T	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-0.113;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:35,35:0.50:70
chr13	79946071	rs369797909	TA	T	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.499;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:58,34:0.37:92
chr13	79946104	rs9545093	A	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr13	79946163	rs7325232	G	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	80095030	rs11549502	C	T	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.433;QD=5.95;ReadPosRankSum=3.022;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:174,96:0.36:270
chr13	80095143	.	CT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.665;QD=1.00;ReadPosRankSum=-0.454;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr13	80910786	rs4728	C	A	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	80910792	rs700397	T	G	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	86369120	rs3825413	C	T	10233.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr13	87045827	rs9513670	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	88270840	rs4036976	CTGT	C	5875.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=1.821;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	88270860	rs956960	A	G	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	92408505	rs3783054	T	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	92408838	.	C	T	154.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr13	92560425	rs1854735	G	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr13	92796964	rs12429836	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr13	93142312	rs2149060	T	A	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	93142362	rs722178	C	T	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	94938785	rs1409174	A	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:12,55:0.82:67
chr13	94938808	rs56210803	GAT	G	1291.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr13	94958100	rs10492630	T	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr13	95090692	rs1540979	T	A	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	95096505	rs7339198	G	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	95097956	rs755684	C	T	8185.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr13	95230877	rs16949940	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr13	95235522	rs117188419	T	C	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-1.709;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:99,34:0.26:133
chr13	95243270	rs9301979	G	A	16820.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr13	95254382	rs9556404	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr13	95273447	rs12429818	G	A	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:118,165:0.58:283
chr13	95275576	rs4296139	C	G	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.736;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:157,50:0.24:207
chr13	95363884	rs9556411	G	C	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=13.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=0.741;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr13	95364046	rs1060474	C	G	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:247,129:0.34:376
chr13	95364337	rs2253604	T	G	11534.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr13	95673791	rs3742106	A	C	6413.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:149,277:0.65:426
chr13	95673939	rs9524765	A	G	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:8,158:0.95:166
chr13	95705284	rs71431495	C	T	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:69,89:0.56:158
chr13	95714976	rs1751034	C	T	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr13	95715148	rs202097426	AAAAG	A	1728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=5.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.323;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:41,112:0.73:153
chr13	95725359	rs2274401	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr13	95726541	rs1189466	A	G	18547.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	1/1:2,701:1.00:703
chr13	95727780	rs1678339	T	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr13	95735604	rs1189437	G	T	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	95822761	rs11568663	C	T	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:87,129:0.60:216
chr13	95829870	rs1751005	T	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	95847020	rs2274403	A	G	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:143,74:0.34:217
chr13	95858686	rs3818493	G	A	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	95858704	rs3818494	G	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	95858978	rs2274405	T	C	8001.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr13	95858996	rs2274406	T	C	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr13	95859974	rs2274408	T	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	95860288	rs2274410	C	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	95861804	rs899494	A	G	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr13	95861981	rs1678403	C	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	95862860	rs3046400	AGAGT	A	2673.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,66:0.77:86
chr13	95862873	rs4148472	G	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.041;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr13	95862896	rs899496	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	95863143	rs899497	A	G	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	95900172	rs145006616	G	GCACACACACACACACACA	832.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.65;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	95921690	rs1970476	T	A	106.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.15;ReadPosRankSum=0.792;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr13	95953405	rs61974974	G	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr13	96485417	rs3099359	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr13	96505952	rs3099360	T	C	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:32,78:0.71:110
chr13	96506664	rs11070154	A	G	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-1.333;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:250,100:0.29:350
chr13	96508385	rs374143073	A	C	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:111,68:0.38:179
chr13	96513187	rs34859372	T	C	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr13	96529376	rs10601193	TCTGC	T	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr13	96529725	rs4773930	A	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr13	96539977	rs11842395	T	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.98;ReadPosRankSum=-1.383;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr13	96539979	rs11842396	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.98;ReadPosRankSum=-0.998;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr13	96540141	rs9525075	T	C	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	96540141	.	TTT	CTC	1662	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=24;MQ=60.0;NF=25;NR=20;PP=1662;QD=38.1215083303;SC=TTCACTCAGATTTACCTTTCT;SbPval=0.54;Source=Platypus;TC=45;TCF=25;TCR=20;TR=45;WE=96540151;WS=96540131;set=Platypus	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	96540143	rs9525076	T	C	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	96540204	rs12876018	T	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr13	96578189	rs7985727	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	96579462	rs9525086	T	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr13	96599271	rs7986005	C	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr13	96599433	rs9556512	A	C	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=6.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-0.718;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr13	96599445	rs9556513	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr13	96636170	rs9562008	G	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr13	96638636	rs816142	A	C	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	96641695	rs555120	T	G	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.241;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	97079618	rs9556587	A	G	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr13	97639414	rs9284174	C	T	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:305,155:0.34:460
chr13	97995509	.	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=2.073;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:58,8:0.12:66
chr13	98087096	rs3803251	T	C	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr13	98637917	.	C	CT	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.368;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr13	98829176	rs628778	T	C	12880.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr13	98860660	rs285108	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.385;QD=10.38;ReadPosRankSum=-1.318;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr13	98860731	rs60575077	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.61;ReadPosRankSum=1.373;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr13	98860749	rs285109	A	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr13	98896776	rs7318267	C	T	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:36,93:0.72:129
chr13	99017533	rs587377	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr13	99037146	.	G	A	1705.77	.	AC=1;AF=0.500;AN=2;DP=276;set=Intersection	GT:AD:AF:DP	0/1:183,93:0.34:276
chr13	99042158	rs9582224	G	A	4921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=2.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-1.233;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:175,235:0.57:410
chr13	99061556	rs5806061	C	CT	6854.73	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:8,303:0.97:311
chr13	99064244	rs11556829	T	C	4913.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:162,221:0.58:383
chr13	99090040	rs35861926	T	G	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr13	99090166	rs59023150	TG	T	2618.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	99090168	rs1969794	G	T	201.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-4.397;QD=2.97;ReadPosRankSum=0.015;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr13	99092052	rs4772080	G	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr13	99093094	rs2146998	T	C	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	99098318	rs2274053	C	T	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr13	99098470	rs2274054	C	T	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	99098882	rs2281766	A	C	17895.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr13	99100474	rs9517310	C	T	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:43,79:0.65:122
chr13	99100547	rs12261	T	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:137,66:0.33:203
chr13	99105395	rs8481	G	A	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=0.271;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:32,45:0.58:77
chr13	99109319	rs2031237	C	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr13	99109719	.	CTTTT	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=1.623;QD=7.69;ReadPosRankSum=0.689;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr13	99112468	rs112280830	T	TGCCTGAC	10878.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr13	99112680	rs4771305	C	T	13376.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr13	99112754	rs4772083	TT	GC	6899.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	99115838	rs56325686	TA	T	1864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.086;QD=11.17;ReadPosRankSum=-0.295;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:38,129:0.77:167
chr13	99115927	rs2296149	A	G	11415.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:1,433:1.00:434
chr13	99127052	rs9582232	C	T	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,84:0.71:119
chr13	99127252	rs9513430	C	G	6397.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:122,279:0.70:401
chr13	99127496	rs2274055	C	T	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:101,173:0.63:274
chr13	99134626	rs9513431	A	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr13	99354931	rs1768042	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=1.157;QD=10.41;ReadPosRankSum=-1.309;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr13	99356612	rs1339067	A	G	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:145,84:0.37:229
chr13	99361221	rs61087152	CT	C	167.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.671;QD=6.71;ReadPosRankSum=-1.972;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr13	99361959	rs2297319	G	A	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:180,120:0.40:300
chr13	99363919	rs6145194	GGTTTT	G	687.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.020;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=2.491;QD=16.37;ReadPosRankSum=-0.965;SOR=1.641;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr13	99404743	rs4646208	T	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	99404761	rs4646207	C	T	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	99447005	rs812808	T	C	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr13	99449579	rs1289314	T	C	12407.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr13	99449755	rs1289315	G	A	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	99482135	rs9517460	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr13	99505632	rs9513497	C	T	8311.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr13	99532622	rs6491460	G	A	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	99534048	rs6491461	G	A	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	99536031	rs9517474	G	A	8063.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr13	99536215	rs2296996	C	T	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=2.861;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	99536220	rs2296997	A	G	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	99537202	rs2274641	C	A	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	99537217	rs2274642	G	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	99538711	rs6491465	C	G	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	99538935	rs6491466	C	G	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr13	99540395	rs1928104	A	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	99540500	rs2274643	A	G	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr13	99555187	rs35240640	AT	A	3690.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:10,179:0.95:189
chr13	99574524	rs7983462	C	T	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	99575775	rs7989935	C	T	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	99578265	rs7318788	T	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	99853225	rs7332516	C	G	12680.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr13	99853443	rs7338947	T	G	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr13	99890849	.	G	GT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=4.436;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.912;QD=1.06;ReadPosRankSum=0.744;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:112,29:0.21:141
chr13	99895965	rs4771326	G	A	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	99966516	.	C	CT	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.031;QD=6.59;ReadPosRankSum=-0.555;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:37,44:0.54:81
chr13	99970429	rs56695114	CT	C	3345.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr13	100170081	rs142214854	ATCTTTTTTTTAATGTT	A	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr13	100181915	rs4772217	A	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr13	100199224	rs3751373	C	T	1454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=1.223;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:132,85:0.39:217
chr13	100201640	rs3803255	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr13	100214847	rs41280154	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr13	100258863	rs35123470	C	CG	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr13	100517028	rs12430038	G	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:86,49:0.36:135
chr13	100517195	rs3831038	CTG	C	2241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.191;QD=8.59;ReadPosRankSum=-1.941;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:174,87:0.33:261
chr13	100518400	rs2390354	T	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr13	100518580	rs3783185	A	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.019;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:113,41:0.27:154
chr13	100537221	rs912283	T	C	13437.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr13	100537232	rs912284	T	C	14518.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr13	100537376	rs912285	G	A	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr13	100622667	rs71114653	TGGC	T	6689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=2.717;QD=27.53;ReadPosRankSum=0.067;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:67,176:0.72:243
chr13	100635377	rs1831992	C	T	17469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0.000;DB;DP=1377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=0.430;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:544,823:0.60:1367
chr13	100637102	rs9585308	T	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr13	100638090	rs34544768	G	GT	943.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.960;QD=8.35;ReadPosRankSum=0.279;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:43,70:0.62:113
chr13	100638392	rs13542	G	A	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:110,170:0.61:280
chr13	100755044	rs2184382	G	A	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	100915080	.	A	T	500.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr13	100921056	rs4306370	A	G	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	100945533	rs9300598	G	A	8876.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr13	101020695	rs9518061	A	G	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	101020914	rs142289178	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr13	101144108	rs12428535	A	C	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	101264623	rs72661053	C	T	3754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.402;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.09;ReadPosRankSum=0.049;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:74,96:0.56:170
chr13	101264633	rs1572641	C	T	4055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.48;ReadPosRankSum=0.068;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:85,113:0.57:198
chr13	101264908	rs145949805	TACACAC	T	350.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.567;QD=21.89;ReadPosRankSum=-0.320;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr13	101286924	rs1890861	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr13	101286974	rs17475563	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:67,35:0.34:102
chr13	101287365	rs946838	T	C	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:173,92:0.35:265
chr13	101288992	rs3803256	C	T	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:102,152:0.60:254
chr13	101308836	rs11315434	AC	A	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr13	101316313	rs1298168	C	T	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr13	101321067	rs2791680	T	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr13	101714358	.	G	A	3938.77	.	AC=1;AF=0.500;AN=2;DP=299;set=Intersection	GT:AD:AF:DP	0/1:126,172:0.58:298
chr13	101720300	rs1289556	T	G	7415.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:182,329:0.64:511
chr13	101727043	rs34229756	C	CAG	1366.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:125,58:0.32:183
chr13	101727071	rs112963196	CAG	C	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.193;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:136,20:0.13:156
chr13	101736075	rs686141	A	G	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr13	101747878	rs609246	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr13	101747984	rs9513851	G	A	1936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=3.755;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:34,85:0.71:119
chr13	101753023	rs113145864	C	CTG	3514.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr13	101753025	rs57703343	GT	G	5949.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	101755813	rs7331375	C	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr13	101757036	rs41281138	G	T	4638.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:85,202:0.70:287
chr13	101776869	rs117986283	C	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr13	101795160	rs660622	C	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	101795244	rs146138824	C	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr13	101795317	rs673213	A	C	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr13	101795373	rs17484928	C	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:124,68:0.35:192
chr13	101795422	rs661585	A	G	6550.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr13	101833386	rs9582462	A	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr13	101833450	rs896560	C	T	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:45,99:0.69:144
chr13	101881777	rs3916906	G	A	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:118,215:0.65:333
chr13	101882016	rs145537012	ATTATT	A	1387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.867;QD=22.75;ReadPosRankSum=-1.700;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:25,36:0.59:61
chr13	101890040	rs9518352	A	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr13	101944752	rs570252	C	T	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	102021517	.	A	ATG	87	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=22;MQ=57.84;NF=0;NR=3;PP=87;QD=30.0;SC=GACAAAATAAATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=20;TCF=3;TCR=17;TR=3;WE=102021525;WS=102021507;set=Platypus	GT:AD:AF:DP	0/1:17,3:0.15:20
chr13	102106276	rs2297700	G	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr13	102220193	rs1140605	G	T	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:53,107:0.67:160
chr13	102235609	rs145784947	G	A	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.936;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:73,90:0.55:163
chr13	102235764	rs370279713	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=-0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.49;ReadPosRankSum=-0.345;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr13	102250542	rs150262172	C	T	5113.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:100,230:0.70:330
chr13	102344867	rs981073	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	102366825	rs2281991	A	G	4602.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:110,197:0.64:307
chr13	102368056	rs1436266	G	T	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr13	102375150	rs149661933	C	T	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.868;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:275,84:0.23:359
chr13	103289409	rs9518799	A	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	103297435	rs10713633	CT	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.939;QD=0.59;ReadPosRankSum=1.564;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:170,40:0.19:210
chr13	103301537	rs664660	G	T	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr13	103346659	rs7981120	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:83,33:0.28:116
chr13	103346806	rs2390760	C	G	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=1.743;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:153,64:0.29:217
chr13	103383417	rs9554897	T	C	7127.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:155,306:0.66:461
chr13	103384824	rs9300756	G	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:127,56:0.31:183
chr13	103385015	rs6491707	A	G	12171.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr13	103385299	rs7335290	A	C	6610.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr13	103385798	rs7983175	T	C	9419.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr13	103386116	rs7982465	C	G	12521.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr13	103386283	rs7982670	A	G	11959.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr13	103388220	rs9300758	A	G	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr13	103388764	rs113711522	T	C	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:303,159:0.34:462
chr13	103391634	rs7322112	C	T	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	103394003	rs1449707	G	A	12437.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr13	103394613	rs9585986	T	G	10839.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr13	103394716	rs9585987	T	C	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	103395819	rs1375720	C	T	6820.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr13	103396716	rs6491708	C	G	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	103397583	rs9582626	C	G	12572.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr13	103400083	rs1026158	G	A	20498.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	1/1:0,749:1.00:749
chr13	103400729	rs12583104	G	A	10380.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr13	103402522	rs9300760	C	T	12850.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr13	103402772	rs9284197	T	C	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	103410710	rs9585989	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr13	103410782	rs1375719	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:62,23:0.27:85
chr13	103410914	rs12855785	A	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:105,51:0.33:156
chr13	103422515	rs112245981	T	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr13	103445609	rs11441956	G	GT	2000.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	103474031	rs2148449	C	T	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	103484060	rs2181676	G	A	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr13	103484107	rs3825519	C	T	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	103491172	rs2281886	G	A	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	103491223	rs7337774	C	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	103504517	rs1047768	T	C	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:296,190:0.39:486
chr13	103506509	rs1535729	A	C	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	103510896	rs3736865	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr13	103511301	rs4150299	T	C	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:246,115:0.32:361
chr13	103511428	rs3918332	G	A	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:31,106:0.77:137
chr13	103514091	rs7982448	T	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.72;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	103518769	rs6491716	T	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	103518844	rs3759500	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr13	103524762	rs4150360	C	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:103,50:0.33:153
chr13	103527849	rs9514066	G	C	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr13	103527930	rs9514067	G	C	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr13	103528337	rs873601	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	103698363	rs2301157	A	G	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	103698630	rs279940	C	T	9034.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr13	103703579	rs8000956	T	C	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr13	103705044	rs188096	A	C	13108.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,480:1.00:481
chr13	103710571	rs142412008	G	A	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:64,113:0.64:177
chr13	106119446	rs2391191	G	A	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	107145463	rs7995379	G	C	10127.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr13	107145829	rs3742160	A	T	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:67,95:0.59:162
chr13	107145904	rs3742159	C	T	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr13	107209378	rs9587157	T	C	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:72,133:0.65:205
chr13	107862841	rs3751448	T	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	108183631	rs912446	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr13	108518444	rs1771137	G	A	4732.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:118,200:0.63:318
chr13	108863591	rs1805388	G	A	1459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=-0.404;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:25,68:0.73:93
chr13	108955464	rs1224145	C	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	108959080	rs11381410	A	AT	1071.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:11,59:0.84:70
chr13	108959364	.	CAAAAAAAAAAAAAA	C	753.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.87;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	109282072	rs927855	T	G	2350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.423;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=0.915;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:46,98:0.68:144
chr13	109459020	rs9301323	G	A	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	109472601	rs2146327	G	C	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	109472849	rs9521065	A	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	109472886	rs7994148	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr13	109472920	rs55787628	A	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr13	109472933	rs9514924	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr13	109496601	rs7989143	C	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr13	109496636	rs17393735	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:95,67:0.41:162
chr13	109496813	rs16973313	T	C	3056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=1.592;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:345,178:0.34:523
chr13	109496928	rs7989802	C	T	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	109508011	rs423376	A	C	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr13	109518676	rs112184150	C	CAGTA	1123.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr13	109535317	rs196141	A	G	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr13	109538659	rs148087685	TA	T	2545.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:56,81:0.59:137
chr13	109538698	rs196136	C	T	2989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.241;QD=14.10;ReadPosRankSum=-1.874;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:71,141:0.67:212
chr13	109550561	rs7322768	A	G	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:170,76:0.31:246
chr13	109562298	rs7339032	G	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr13	109609951	rs9559450	G	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:145,71:0.33:216
chr13	109661359	rs3825491	C	G	7424.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:147,319:0.68:466
chr13	109680620	rs10574005	GTATAA	G	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.566;QD=19.05;ReadPosRankSum=0.926;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr13	109700757	.	A	AT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.629;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr13	109717874	.	GA	G	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.378;QD=1.66;ReadPosRankSum=-0.145;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:147,48:0.25:195
chr13	109717928	rs1431267	A	G	12562.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr13	109779906	rs3815983	C	T	2568.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:225,131:0.37:356
chr13	109793474	rs28705148	T	C	14253.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr13	109793720	rs7986595	A	C	12524.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr13	109832084	rs1033870	G	A	3661.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:66,139:0.68:205
chr13	109858890	rs11430851	A	AT	3755.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:53,115:0.68:168
chr13	110408608	rs1865434	C	T	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr13	110435231	rs1805097	C	T	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:116,66:0.36:182
chr13	110435914	rs12853546	G	A	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:65,136:0.68:201
chr13	110435953	rs4773092	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:143,73:0.34:216
chr13	110436232	rs3742210	G	A	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:234,109:0.32:343
chr13	110807474	rs615742	T	C	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	110807496	rs616089	T	C	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr13	110813523	rs2275842	C	T	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	110813532	rs2275843	G	A	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.41;SOR=1.727;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	110817171	rs1816884	G	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	110819457	rs652572	A	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=2.173;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	110819460	rs1778817	G	A	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=2.206;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	110819586	rs589985	G	A	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr13	110821844	rs3832901	A	AAC	445.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr13	110821874	rs59694732	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:80,20:0.20:100
chr13	110839550	rs536174	T	G	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	110843985	rs1373744	T	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	110844721	rs2241967	C	T	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	110845314	rs685884	G	A	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	110847227	rs505050	G	T	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	110850770	rs683309	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	110851014	rs496916	G	C	13800.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr13	110855995	rs371161272	TA	T	2657.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:59,89:0.60:148
chr13	110856085	rs648263	A	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	110857823	rs482757	C	T	7598.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr13	110857895	rs677877	A	G	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr13	110859316	.	G	GA	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.070;QD=1.35;ReadPosRankSum=0.354;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:88,25:0.22:113
chr13	110859690	rs598819	A	G	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr13	110859743	rs598893	C	T	9502.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:1,361:1.00:362
chr13	110861785	rs645114	C	G	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	110864225	rs532625	A	T	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	110864396	rs626444	T	C	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr13	110895092	rs41275104	A	G	6841.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:177,301:0.63:478
chr13	110895150	rs41275106	A	G	5126.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:135,231:0.63:366
chr13	110959464	rs113651836	C	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr13	111077197	rs4238272	G	A	8989.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr13	111077400	rs58151684	AT	A	2701.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr13	111077450	rs7326522	G	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	111082157	rs3929758	C	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr13	111091157	.	C	CCTCCACA	1317.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.51;SOR=5.486;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	111091995	rs7991229	T	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr13	111098110	rs7489705	C	T	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	111098226	rs4103	C	T	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	111098338	rs7988186	A	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	111099057	rs45612833	G	A	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	111099122	rs7326449	G	A	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	111099338	rs35275552	T	TA	1910.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.284;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.274;QD=21.96;ReadPosRankSum=-1.420;SOR=1.725;set=HC	GT:AD:AF:DP	1/1:4,83:0.95:87
chr13	111101931	rs56676181	C	T	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.320;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	111101952	rs75082326	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	111102042	rs76425569	G	A	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	111102126	rs74941798	C	T	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr13	111102183	rs34734302	A	G	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	111109157	rs28502737	G	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=26.82;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	111109576	rs9521780	G	C	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr13	111109618	rs9515216	G	C	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:6,278:0.98:284
chr13	111109859	rs9515218	A	G	10220.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr13	111109882	rs9555703	A	G	10844.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr13	111109960	rs9515219	T	C	9432.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:2,353:0.99:355
chr13	111110303	rs7319009	T	C	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	111110385	.	C	T	5026.77	.	AC=1;AF=0.500;AN=2;DP=309;set=Intersection	GT:AD:AF:DP	0/1:82,223:0.73:305
chr13	111110418	rs7325055	G	C	11890.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr13	111110666	rs7326779	T	C	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.95;SOR=6.138;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	111110674	rs7325334	C	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=7.328;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	111111023	rs9521781	T	C	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	111111043	rs9521782	G	A	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	111111173	rs7990214	G	A	10961.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr13	111111235	rs7990383	G	A	5767.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr13	111114751	rs7992330	G	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	111115467	rs9521786	G	A	6618.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	111115480	rs9515223	C	T	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	111117745	rs3803236	C	T	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	111118221	rs1983932	T	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	111118546	rs1927350	T	G	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	111118574	rs1927351	A	G	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	111118580	rs1927352	G	A	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=3.669;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	111118615	rs1927353	A	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	111119296	rs3803232	A	G	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.252;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr13	111120684	rs34167123	AT	A	9101.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr13	111121444	rs9559813	C	A	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	111121483	rs9559814	A	G	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	111121717	rs9515229	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	111130226	rs9559818	G	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	111130519	rs2281974	C	T	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr13	111132820	rs1475438	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr13	111137167	rs1983930	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	111137906	rs9521806	G	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	111143755	rs413756	T	C	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr13	111145676	rs2391833	G	C	6791.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr13	111153934	rs378601	G	A	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	111154058	rs439831	T	A	8677.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr13	111154061	rs409858	T	C	8628.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr13	111154160	rs2281968	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	111155363	rs406174	G	A	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	111155428	rs401316	C	T	8929.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr13	111155711	rs4773198	C	T	3085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=0.363;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:333,174:0.34:507
chr13	111155773	rs438758	T	C	7170.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.16;SOR=2.068;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr13	111155773	.	TGGGGCG	CGGGGCA,CGGGGCG	2107	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=7;MMLQ=24;MQ=60.0;NF=15,59;NR=52,152;PP=1134,2107;QD=17.7234011173;SC=CTGGACCCACTGGGGCGGTGG;SbPval=0.8;Source=Platypus;TC=211;TCF=59;TCR=152;TR=67,211;WE=111155787;WS=111155763;set=Platypus	GT:AF:DP	0/1:0.32:211
chr13	111155779	rs4773199	G	A	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.773;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=1.182;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:120,70:0.37:190
chr13	111156021	rs4773200	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr13	111156047	rs9284254	C	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr13	111156153	rs9301460	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:149,56:0.27:205
chr13	111156411	rs414881	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr13	111156499	rs4771683	C	T	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr13	111156773	rs4771684	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	111158874	rs445348	A	G	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr13	111164614	rs422733	T	C	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=7.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=1.437;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:45,42:0.48:87
chr13	111164628	rs3074455	TAA	T	605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=1.585;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:33,27:0.45:60
chr13	111176393	rs419244	A	G	6791.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:206,313:0.60:519
chr13	111267706	rs371554585	A	AC	1456.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	111268196	rs330551	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.84;SOR=4.461;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	111277810	rs330561	C	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	111290630	rs41275126	T	C	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr13	111290880	rs330563	G	A	15183.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr13	111290967	rs41275128	T	C	10872.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr13	111291044	rs330564	T	C	6794.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr13	111293489	rs144796593	A	ATGC	1729.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	111293499	rs61970495	G	A	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	111293551	rs330569	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	111293585	rs10709696	TG	T	935.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	111293640	rs7998306	G	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	111293683	rs2308073	A	AATCG	3082.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	111293694	rs147019789	A	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr13	111293847	rs330570	G	A	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:121,80:0.40:201
chr13	111293915	rs1043886	T	G	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	111294920	rs11414164	G	GC	20506.73	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr13	111295188	rs77749976	G	C	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	111295216	rs79847822	C	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	111298304	rs141996297	G	A	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:107,174:0.62:281
chr13	111298392	rs436462	A	G	8211.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr13	111315299	rs4622384	T	C	7421.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr13	111315405	rs7993933	G	A	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr13	111315489	rs2296659	A	G	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	111315506	rs376834	A	C	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	111315595	rs2296657	A	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	111319754	rs4628819	T	C	16934.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr13	111335319	rs61971611	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	111340042	rs78646508	A	C	1537.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.31;ReadPosRankSum=0.875;SOR=0.604;set=HC	GT:AD:AF:DP	1/1:7,77:0.92:84
chr13	111350205	rs34523940	C	T	6713.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr13	111358000	rs9521906	T	G	13292.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:3,461:0.99:464
chr13	111368164	rs7338333	T	G	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	111545198	rs10664568	A	AGT	933.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr13	111555680	rs111812847	GTTTTAA	G	461.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr13	111562803	rs35930208	T	C	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr13	111566989	rs59070384	A	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	111567039	rs56924528	G	C	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	111806245	rs61966721	A	G	5654.77	.	AC=1;AF=0.500;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	0/1:516,294:0.36:810
chr13	111929973	rs141685999	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr13	111955465	rs1555751	T	C	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr13	111973050	rs11841171	G	A	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr13	111973098	rs12855715	T	C	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:48,86:0.64:134
chr13	111973342	rs57892141	T	TG	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr13	111973353	rs56975726	A	G	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.56;ReadPosRankSum=0.784;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr13	111980478	rs2479955	A	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr13	111980537	rs1359428	C	T	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=2.196;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:94,46:0.33:140
chr13	111991463	rs9522188	G	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	112278338	rs7992732	G	A	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-0.777;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:133,57:0.30:190
chr13	112278521	rs7992659	C	G	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:171,76:0.31:247
chr13	112297403	rs8000950	C	T	8436.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr13	113032962	rs9550063	G	A	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=0.775;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:68,41:0.38:109
chr13	113153114	rs9549532	T	C	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:43,90:0.68:133
chr13	113159187	rs7320173	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr13	113181415	rs9603905	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr13	113201849	rs113243133	T	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=63.17;MQRankSum=3.552;QD=15.93;ReadPosRankSum=0.124;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr13	113201852	rs75968030	A	G	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=63.17;MQRankSum=3.552;QD=15.93;ReadPosRankSum=-0.264;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr13	113201864	.	C	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.434;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.80;MQRankSum=3.974;QD=14.62;ReadPosRankSum=-2.686;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr13	113201878	rs41288618	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr13	113201879	.	C	T	355	.	AC=1;AF=0.500;AN=2;BRF=0.02;FR=0.5000;HP=2;HapScore=3;MGOF=33;MMLQ=21;MQ=62.18;NF=12;NR=4;PP=355;QD=24.3607007842;SC=GGGAAAGTCGCGCGTGGGAAA;SbPval=0.44;Source=Platypus;TC=43;TCF=34;TCR=9;TR=16;WE=113201887;WS=113201868;set=Platypus	GT:AD:AF:DP	0/1:27,16:0.37:43
chr13	113202667	rs9550139	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr13	113333684	rs7338610	C	T	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=1.637;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:81,30:0.27:111
chr13	113439586	rs11616475	G	T	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=1.312;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:148,92:0.38:240
chr13	113465109	rs9577843	G	T	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr13	113473598	rs34166778	CAT	C	15324.73	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr13	113474348	rs9603957	C	T	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:45,104:0.70:149
chr13	113479820	rs368865	A	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:142,58:0.29:200
chr13	113487043	rs2297223	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr13	113487133	.	C	T	1761.77	.	AC=1;AF=0.500;AN=2;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr13	113496566	rs946006	C	G	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.091;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:216,82:0.28:298
chr13	113508537	rs11424633	A	AT	1337.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:122,60:0.33:182
chr13	113508839	rs9549573	G	C	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:116,75:0.39:191
chr13	113512004	rs7325522	C	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr13	113525952	rs1765767	A	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	113527967	rs1320525	G	A	12185.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr13	113536132	rs1290177	T	C	12294.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr13	113563351	rs2993328	A	G	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	113639869	rs3011543	A	G	6165.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=1.478;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	113639872	rs3011542	A	G	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=1.490;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	113656216	rs7986677	C	T	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	113681243	rs9549343	C	A	4988.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:132,217:0.62:349
chr13	113699488	rs3814266	T	C	6872.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:159,307:0.66:466
chr13	113717022	rs7982214	G	A	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-3.515;QD=2.59;ReadPosRankSum=-0.652;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:190,50:0.21:240
chr13	113733096	.	G	A	1158.77	.	AC=1;AF=0.500;AN=2;DP=159;set=Intersection	GT:AD:AF:DP	0/1:102,56:0.35:158
chr13	113735390	rs494129	T	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	113738175	rs491455	G	A	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	113739126	rs72663544	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr13	113739518	rs546818	G	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	113740706	rs1745949	A	G	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	113741770	rs150786675	C	T	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:76,107:0.58:183
chr13	113741851	rs514181	C	A	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr13	113742805	rs7986589	C	G	17114.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr13	113743768	.	T	C	1929	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=2;HapScore=1;MGOF=15;MMLQ=24;MQ=56.7;NF=65;NR=15;PP=1929;QD=24.5471401568;SC=TCTCATCCAGTCCGTCCGGGT;SbPval=0.57;Source=Platypus;TC=83;TCF=67;TCR=16;TR=80;WE=113743776;WS=113743758;set=Platypus	GT:AD:AF:DP	1/1:3,80:0.96:83
chr13	113744139	rs4907483	G	A	4042.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:387,217:0.36:604
chr13	113745611	rs4907485	T	G	6620.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr13	113748690	rs7327099	C	T	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	113749475	rs2146752	G	A	10716.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr13	113750586	rs12855893	G	A	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,53:0.63:84
chr13	113776947	rs563964	T	C	2552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.136;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.68;ReadPosRankSum=-2.366;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:23,63:0.73:86
chr13	113776947	.	TGC	CGA	2581	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=24;MQ=60.0;NF=53;NR=4;PP=2581;QD=20;SC=GATGAGGTTCTGCGGGGCCTC;SbPval=0.68;Source=Platypus;TC=84;TCF=77;TCR=7;TR=57;WE=113776957;WS=113776941;set=Platypus	GT:AD:AF:DP	1/0:27,57:0.68:84
chr13	113776949	rs3211717	C	A	2552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.68;ReadPosRankSum=-1.417;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:25,64:0.72:89
chr13	113792754	rs2251102	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr13	113792893	rs2026160	C	A	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.895;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:57,33:0.37:90
chr13	113801737	rs5960	C	T	5734.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr13	113801843	rs2031184	A	G	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	113812962	rs2273971	G	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	113818708	rs3024731	A	T	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:42,81:0.66:123
chr13	113818817	rs45606038	T	C,TC	9888.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=356;set=Intersection	GT:AF:DP	1/2:0.21,0.79:324
chr13	113818900	rs564081	A	G	7851.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr13	113819009	rs494860	T	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr13	113819513	rs3024735	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.019;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr13	113833221	rs9549352	A	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:181,89:0.33:270
chr13	113833499	rs486407	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr13	113852425	rs546686	C	T	7525.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	113854560	rs3751411	G	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr13	113854600	rs3751412	T	C	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	113854715	rs3751413	C	T	5654.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:105,249:0.70:354
chr13	113862801	rs9549692	G	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr13	113882221	rs34413442	C	CA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.507;QD=4.54;ReadPosRankSum=-0.028;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr13	113888201	rs2146408	T	C	7941.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr13	113888425	rs9549705	T	C	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr13	113889355	rs2287249	A	G	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:185,79:0.30:264
chr13	113889474	rs2287250	C	T	8347.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:163,376:0.70:539
chr13	113889499	rs2287251	A	G	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:347,155:0.31:502
chr13	113891075	rs2287253	G	A	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,77:0.64:120
chr13	113891359	rs2287254	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=0.473;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr13	113893625	rs7317558	G	A	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:77,36:0.32:113
chr13	113893729	rs3794422	G	A	1856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.504;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:290,119:0.29:409
chr13	113897320	rs3764124	C	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:216,128:0.37:344
chr13	113899004	rs3932499	C	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	113900197	rs2302756	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr13	113907391	rs9549365	A	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:77,42:0.35:119
chr13	113909339	rs2302757	A	G	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:242,113:0.32:355
chr13	113917767	rs4907602	T	C	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	113951722	rs7983578	C	T	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	113965002	.	A	AT	1082.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.386;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:76,75:0.50:151
chr13	113965176	rs9577503	C	A	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr13	113978969	rs912010	G	A	3236.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	113999051	rs4406954	C	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-1.490;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr13	114018038	rs9549753	C	A	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=-0.789;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr13	114083421	rs148154052	A	AAG	5528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=4.470;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.143;QD=21.26;ReadPosRankSum=-2.281;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:93,167:0.64:260
chr13	114087997	rs12874568	T	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-1.043;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:20,27:0.57:47
chr13	114088341	rs59659705	T	TG	637.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr13	114112287	rs3814254	C	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:212,98:0.32:310
chr13	114128382	rs74378879	G	A	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:348,213:0.38:561
chr13	114138107	rs41288602	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.088;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr13	114144842	rs2490953	T	C	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:111,75:0.40:186
chr13	114150107	rs11164135	C	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.939;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:121,43:0.26:164
chr13	114155965	rs2490958	G	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:117,54:0.32:171
chr13	114157846	rs9805588	G	A	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:72,105:0.59:177
chr13	114158078	rs9805651	G	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr13	114174798	rs11415817	C	CA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.719;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr13	114175038	rs7319493	G	A	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:144,76:0.35:220
chr13	114175109	rs12430718	C	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr13	114188291	rs2260722	A	G	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:168,79:0.32:247
chr13	114201742	rs2259387	T	C	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr13	114202532	rs12428641	T	C	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.134;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:94,34:0.27:128
chr13	114202549	rs12431354	C	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:99,42:0.30:141
chr13	114202560	rs12429311	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:106,48:0.31:154
chr13	114202575	rs2259398	T	C	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:118,51:0.30:169
chr13	114204128	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.693;QD=1.67;ReadPosRankSum=-1.738;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr13	114240067	rs113638790	CT	C	813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.108;QD=5.15;ReadPosRankSum=0.893;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:83,75:0.47:158
chr13	114309226	rs11164142	G	A	15553.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr13	114312354	rs9285616	T	G	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr13	114312605	rs58459344	G	GA	2977.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.30;QD=44.44;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	114312606	rs58758822	T	G	2986.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.88;QD=44.58;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	114312606	.	TT	AT	1916	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=24;MQ=70.0;NF=14,2;NR=40,40;PP=1207,1916;QD=22.9957631953;SC=GCCAGGGCCGTTTATCAGCGC;SbPval=0.53;Source=Platypus;TC=54;TCF=14;TCR=40;TR=54,42;WE=114312614;WS=114312596;set=Platypus	GT:AD:AF:DP	0/1:0,54:1.00:54
chr13	114312606	.	TT	TGT	1916	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=24;MQ=70.0;NF=14,2;NR=40,40;PP=1207,1916;QD=22.9957631953;SC=GCCAGGGCCGTTTATCAGCGC;SbPval=0.53;Source=Platypus;TC=54;TCF=14;TCR=40;TR=54,42;WE=114312614;WS=114312596;set=Platypus	GT:AD:AF:DP	0/1:1,42:0.98:43
chr13	114322289	rs9796035	A	G	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr13	114323997	rs9796234	T	C	8944.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr13	114325686	rs184061766	G	T	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:96,53:0.36:149
chr13	114469150	rs149974408	G	A	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.825;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:174,52:0.23:226
chr13	114498034	rs9577895	G	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	114498328	rs117636092	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:60,25:0.29:85
chr13	114498362	rs28653123	T	C	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	114502416	rs7400029	T	C	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	114503915	rs9577890	CA	TG	8251.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	114503989	.	TA	CG	689	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=4;HapScore=1;MGOF=60;MMLQ=24;MQ=58.7;NF=2;NR=27;PP=689;QD=25.6023405125;SC=TGGGGACCCCTATATCTACAC;SbPval=0.74;Source=Platypus;TC=33;TCF=3;TCR=30;TR=29;WE=114503998;WS=114503979;set=Platypus	GT:AD:AF:DP	1/1:4,29:0.88:33
chr13	114507836	rs7323732	A	G	26433.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.03;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,587:1.00:587
chr13	114507840	rs7332019	G	A	26891.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=1.177;set=HC	GT:AD:AF:DP	1/1:0,620:1.00:620
chr13	114514911	rs368905669	T	G	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=1.922;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:57,71:0.55:128
chr13	114514918	rs34217684	T	A	2911.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.87;ReadPosRankSum=-0.084;SOR=1.213;set=HC	GT:AD:AF:DP	1/1:3,119:0.98:122
chr13	114524944	rs7400002	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,35:0.39:90
chr13	114530114	rs1803628	G	A	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:177,67:0.27:244
chr13	114537517	rs8191974	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:128,50:0.28:178
chr13	114620051	rs11259844	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr13	114623880	rs7399982	G	A	15226.77	.	AC=1;AF=0.500;AN=2;DB;DP=1133;set=Intersection	GT:AD:AF:DP	0/1:435,693:0.61:1128
chr13	114751040	rs71449038	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr13	114751359	rs10781677	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:55,29:0.35:84
chr13	114762068	.	C	T	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=0.160;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:123,34:0.22:157
chr13	114772917	.	CA	TG	890	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=24;MQ=55.58;NF=23;NR=5;PP=890;QD=33.6952812451;SC=CCCTGCCGGACACCACCTTAC;SbPval=0.86;Source=Platypus;TC=72;TCF=53;TCR=19;TR=28;WE=114772926;WS=114772907;set=Platypus	GT:AD:AF:DP	0/1:44,28:0.39:72
chr13	114772933	.	T	TCC	1108	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=5;HapScore=2;MGOF=35;MMLQ=28;MQ=56.75;NF=25;NR=9;PP=1108;QD=33.5882352941;SC=CTTACCCTTCTCCCCTCCTGC;SbPval=0.65;Source=Platypus;TC=73;TCF=52;TCR=21;TR=34;WE=114772941;WS=114772923;set=Platypus	GT:AD:AF:DP	1/0:39,34:0.47:73
chr13	114773126	rs9562086	C	T	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:69,139:0.67:208
chr13	114774813	rs6560943	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr13	114778593	rs7322518	C	T	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:48,63:0.57:111
chr13	114778859	rs146849472	C	CTCTCCCTCTCTCTG	1285.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr13	114780648	rs2274719	A	C	4044.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:88,183:0.68:271
chr13	114780764	rs2274717	A	G	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:114,196:0.63:310
chr13	114780893	rs41291217	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,57:0.65:88
chr13	114781868	rs2274716	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr13	114783444	rs7986543	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr13	114787031	rs2274713	T	G	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:26,67:0.72:93
chr13	114792842	rs3829340	C	T	7021.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:174,315:0.64:489
chr13	114795094	.	T	C	782	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=4;HapScore=4;MGOF=18;MMLQ=24;MQ=57.2;NF=12;NR=0;PP=782;QD=68.0642677123;SC=ACCTCTAAAATGGCGTCATCC;SbPval=1.0;Source=Platypus;TC=20;TCF=20;TCR=0;TR=12;WE=114795115;WS=114795084;set=Platypus	GT:AD:AF:DP	1/0:8,12:0.60:20
chr13	114795107	.	GT	G	821	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=1;HapScore=4;MGOF=18;MMLQ=28;MQ=58.75;NF=13;NR=2;PP=821;QD=56.9333333333;SC=CGTCATCCTGGTGGGCCAGGA;SbPval=0.52;Source=Platypus;TC=26;TCF=23;TCR=3;TR=15;WE=114795115;WS=114795084;set=Platypus	GT:AD:AF:DP	1/0:11,15:0.58:26
chr13	114806741	rs9525346	C	A	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:63,117:0.65:180
chr13	114839462	rs41291225	T	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr13	115010254	rs3211416	C	T	6439.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr13	115011550	rs201167565	G	GT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=2.216;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr13	115047374	.	T	TGGAGGGAGG	182.73	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr13	115047700	rs9590410	A	T	6592.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:155,297:0.66:452
chr13	115064542	rs2701318	T	C	3800.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:85,177:0.68:262
chr14	19685269	rs376856717	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.40;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	19685620	.	C	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.22;MQRankSum=0.524;QD=22.55;ReadPosRankSum=-1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr14	19685626	.	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.00;MQRankSum=-0.000;QD=17.59;ReadPosRankSum=-0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr14	19889793	rs187412518	C	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.84;QD=18.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	20201972	rs4391979	A	C	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr14	20202040	rs8011997	T	A	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr14	20216298	rs12896533	T	C	12689.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr14	20248828	rs2635535	C	T	22560.77	.	AC=2;AF=1.00;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	1/1:0,820:1.00:820
chr14	20249176	rs2815960	G	A	18257.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr14	20249456	rs2815959	G	A	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	20296541	rs56930122	C	CA	521.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.329;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:77,44:0.36:121
chr14	20344373	rs142226597	CTT	C	1422.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=7.586;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.344;QD=20.92;ReadPosRankSum=1.863;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:10,58:0.85:68
chr14	20345346	rs12883767	A	T	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	20403909	rs2792148	T	C	9641.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr14	20404736	rs2792146	G	A	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr14	20404767	rs2792145	A	G	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr14	20404874	rs2792144	C	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	20444490	rs11158071	C	T	14334.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;MQ=59.86;set=Intersection	GT:AD:AF:DP	1/1:2,530:1.00:532
chr14	20470399	rs7493807	G	A	13634.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr14	20482471	rs12590785	C	T	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	20501962	rs2775261	G	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	20502120	rs17277032	C	T	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	20528359	rs1959630	G	T	15048.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr14	20585547	rs200403018	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.039;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr14	20586042	rs8005245	G	C	7454.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:155,317:0.67:472
chr14	20586432	rs9323534	C	T	5388.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:123,246:0.67:369
chr14	20586650	rs10140123	C	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr14	20642034	rs7143334	A	T	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr14	20665790	rs4981822	T	A	5425.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:150,253:0.63:403
chr14	20665840	rs4981088	G	A	6186.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:141,281:0.67:422
chr14	20665887	rs4981823	G	C	10612.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr14	20666175	rs55781225	C	CA	7448.73	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:222,352:0.61:574
chr14	20666556	rs2318886	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr14	20666587	rs139162797	TA	T	138.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr14	20666623	rs2318887	T	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr14	20692188	rs12891553	T	C	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=0.920;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:377,147:0.28:524
chr14	20692291	rs34693535	C	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:323,147:0.31:470
chr14	20692453	rs17211285	G	T	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:205,86:0.30:291
chr14	20692574	rs17277221	T	C	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:210,108:0.34:318
chr14	20692643	rs17277228	T	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:226,99:0.30:325
chr14	20697600	rs12434822	T	G	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:82,178:0.68:260
chr14	20698068	rs4981844	G	T	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:279,138:0.33:417
chr14	20698239	rs1953558	T	C	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:212,113:0.35:325
chr14	20698298	rs1953559	T	G	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:299,139:0.32:438
chr14	20698504	rs1953560	G	A	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:298,141:0.32:439
chr14	20711895	.	G	T	1737.77	.	AC=1;AF=0.500;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr14	20763388	rs61995497	C	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr14	20763446	rs1953551	T	C	2370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.050;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:59,105:0.64:164
chr14	20763716	rs72671250	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr14	20763824	.	T	TA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.721;QD=0.62;ReadPosRankSum=-0.499;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr14	20767618	rs2318864	G	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:51,103:0.67:154
chr14	20767706	rs945459	C	T	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.652;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=0.013;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:23,55:0.71:78
chr14	20769870	rs3825766	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr14	20770036	rs3742945	T	C	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:44,85:0.66:129
chr14	20784121	rs74717577	AAGAG	A	862.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr14	20784718	rs1132644	G	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	20788652	rs11292211	TA	T	1528.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	20794509	rs884368	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr14	20813289	rs2297616	G	A	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	20813672	rs3093890	A	G	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	20815013	rs1713430	C	T	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:3,195:0.98:198
chr14	20818602	rs3093902	C	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	20819112	rs3093904	T	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	20820537	rs1760919	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	20824181	rs3093930	T	C	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:85,205:0.71:290
chr14	20824415	rs3093933	G	T	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	20825013	rs878157	C	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	20825321	rs10625811	T	TTTCAC	6910.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	20825323	rs200223594	T	G	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	20825362	rs3093939	G	A	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	20825965	rs2700	A	C	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr14	20836923	rs10531088	GCACA	G	664.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr14	20837033	rs2104978	T	C	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr14	20844383	rs2228042	C	T	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.576;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:64,100:0.61:164
chr14	20845374	.	T	TA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.458;QD=2.00;ReadPosRankSum=0.251;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr14	20845521	rs2229101	A	C	4525.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:111,192:0.63:303
chr14	20846521	rs2297615	A	T	7921.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:160,343:0.68:503
chr14	20846950	rs8022805	C	T	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:53,115:0.68:168
chr14	20848718	rs142580077	ACAATAGTAAGTCT	A	485.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	20849169	rs2228039	G	A	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:18,68:0.79:86
chr14	20849854	rs12433941	G	A	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:48,115:0.71:163
chr14	20849940	rs12436041	G	A	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:66,115:0.64:181
chr14	20850014	rs1713455	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:131,71:0.35:202
chr14	20850093	rs1713456	C	T	12318.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr14	20851839	rs112044157	GA	G	1126.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:159,81:0.34:240
chr14	20852029	rs1760904	A	G	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr14	20852267	rs2228041	C	T	4952.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:103,214:0.68:317
chr14	20852770	rs1713458	G	T	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:229,136:0.37:365
chr14	20852817	rs1760903	G	A	8836.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	20854734	rs945011	A	G	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	20856327	rs76575764	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr14	20857600	rs111751048	A	G	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:30,75:0.71:105
chr14	20858944	rs4981171	T	C	3966.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:103,178:0.63:281
chr14	20859013	rs872072	G	A	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	20859084	rs872073	T	C	3803.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:100,165:0.62:265
chr14	20863677	rs2228036	C	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,33:0.33:100
chr14	20864049	rs2228026	A	G	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:56,103:0.65:159
chr14	20864720	rs77610051	G	A	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:29,94:0.76:123
chr14	20864995	rs75786003	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr14	20865008	rs4982042	C	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr14	20869019	.	A	AAATCGTTTTCAGT	352.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr14	20869819	rs2297612	A	T	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=6.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-2.022;SOR=1.488;set=HC	GT:AD:AF:DP	0/1:87,27:0.24:114
chr14	20871645	rs8009925	C	A	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	20871846	rs55790286	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr14	20872101	rs112374310	A	C	3955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=0.405;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:107,178:0.62:285
chr14	20872863	rs6413437	A	G	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:56,98:0.64:154
chr14	20872881	rs1760898	G	T	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:55,86:0.61:141
chr14	20873524	rs3762146	A	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	20873795	rs111482622	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr14	20874411	rs61734876	T	C	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=1.030;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:35,65:0.65:100
chr14	20876253	rs1760897	A	G	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:225,99:0.31:324
chr14	20896857	rs7140768	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr14	20897064	rs7145318	C	T	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:221,127:0.36:348
chr14	20897882	rs17111534	G	A	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:190,89:0.32:279
chr14	20903349	rs1713408	T	C	11798.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr14	20903906	rs8017603	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr14	20916958	rs938883	T	C	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:85,145:0.63:230
chr14	20916987	rs938882	G	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:61,141:0.70:202
chr14	20917442	rs938881	A	T	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:57,152:0.73:209
chr14	20919551	rs3120068	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr14	20919623	rs3120067	T	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.675;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr14	20919667	rs3120066	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=2.001;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr14	20919712	rs3120065	C	T	314.03	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr14	20920043	rs1320150	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr14	20920250	rs2275007	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr14	20920340	rs2275006	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr14	20920360	rs3215948	A	AG	546.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr14	20920749	rs1878703	C	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr14	20925154	rs1130409	T	G	9364.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr14	20978531	rs2319198	G	A	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	21024605	rs8014474	G	A	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:49,110:0.69:159
chr14	21024619	rs1243647	A	G	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:67,121:0.64:188
chr14	21024786	rs12590446	A	G	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:101,199:0.66:300
chr14	21026773	rs891297	C	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr14	21052259	rs1429539	T	C	6037.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:117,263:0.69:380
chr14	21058337	rs4981259	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr14	21109141	rs17277522	C	T	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	21109170	rs11628297	T	A	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	21215600	rs17211691	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.955;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr14	21215692	rs10136680	C	T	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	21215728	rs10135976	G	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	21215923	rs34552133	G	T	3294.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:53,141:0.73:194
chr14	21238318	rs3827905	G	A	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	21238798	rs3827907	T	C	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	21250366	rs7156801	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	21360344	rs2233860	G	C	11745.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr14	21388397	rs12147654	C	T	9268.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr14	21458131	rs2741733	G	A	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	21460578	rs2297718	T	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	21463430	rs2741739	G	T	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	21463474	rs2783801	G	A	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	21467913	rs2234632	T	G	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,80:0.70:115
chr14	21468156	rs2149666	T	G	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr14	21486137	rs1243445	G	C	11026.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr14	21486442	rs1243446	A	G	6035.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:122,262:0.68:384
chr14	21488046	rs1243448	G	C	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:33,76:0.70:109
chr14	21488452	rs11325826	CA	C	47.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=9.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	21490125	rs1243449	A	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	21500395	rs1243462	A	G	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:38,82:0.68:120
chr14	21500541	rs35274235	T	TA	3554.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:88,152:0.63:240
chr14	21500597	rs3818616	C	T	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:92,121:0.57:213
chr14	21501095	rs3748346	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr14	21501195	rs3748348	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr14	21502345	rs8007176	A	G	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:95,192:0.67:287
chr14	21503743	rs1243463	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr14	21504447	rs1243464	A	G	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:70,168:0.71:238
chr14	21511458	rs1263872	G	C	12179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=804;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.717;QD=15.22;ReadPosRankSum=0.867;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:273,527:0.66:800
chr14	21511497	rs1243469	C	T	9213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=1.559;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:207,404:0.66:611
chr14	21526044	rs12435011	T	C	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	21526079	rs12437266	C	T	7479.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,250:1.00:251
chr14	21542037	rs4982405	C	T	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr14	21544056	rs7140850	C	T	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	21544842	rs11483416	T	TG	5191.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	21549893	rs7143633	G	C	6747.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	21551058	rs1958395	G	A	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	21551069	rs1958396	T	C	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	21555087	rs145744937	AAATC	A	7878.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=44.26;SOR=1.570;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	21556963	rs35186993	A	AT	4623.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	21560727	rs79837221	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:73,31:0.30:104
chr14	21560752	rs3841049	GGAGGCT	G	733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.880;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.588;QD=9.29;ReadPosRankSum=-0.275;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:56,23:0.29:79
chr14	21562560	rs7149011	T	C	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:55,86:0.61:141
chr14	21570273	rs745696	T	C	6354.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:116,269:0.70:385
chr14	21570614	rs4982408	A	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	21571119	rs12432043	A	G	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=-2.005;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr14	21571208	rs12880628	G	T	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr14	21623010	rs8007993	T	C	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	21623290	rs7145814	T	C	8731.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	21623648	rs7161544	G	A	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	21623836	rs4982419	G	A	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr14	21624197	rs10135366	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr14	21770681	rs17792599	A	G	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:93,125:0.57:218
chr14	21785790	rs3748357	G	A	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=-1.684;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:36,74:0.67:110
chr14	21825924	rs3762156	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr14	21826718	rs3762157	T	G	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr14	21828520	rs927412	T	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr14	21829129	rs3762158	C	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr14	21829404	rs1543494	T	C	4930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.730;QD=14.38;ReadPosRankSum=-0.565;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:118,225:0.66:343
chr14	21829470	.	CTT	C	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.261;QD=11.78;ReadPosRankSum=1.464;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:19,32:0.63:51
chr14	21830635	rs1983768	C	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr14	21831052	rs10138699	T	C	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:54,108:0.67:162
chr14	21831112	rs10146717	G	A	3100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-2.156;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:85,151:0.64:236
chr14	21831692	rs10139379	T	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr14	21833147	rs2295866	G	A	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr14	21834815	.	C	CTTTT	62	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5026;HP=11;HapScore=3;MGOF=2;MMLQ=25;MQ=60.0;NF=1;NR=5;PP=62;QD=11.8333333333;SC=AGTCCACTCACTTTTTTTTTT;SbPval=0.34;Source=Platypus;TC=15;TCF=1;TCR=14;TR=6;WE=21834823;WS=21834805;set=Platypus	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	21836400	rs8008670	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr14	21838160	rs2181125	A	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,50:0.68:73
chr14	21838781	rs4982445	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr14	21859079	rs35057134	GA	G	4981.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:56,141:0.72:197
chr14	21859536	rs3762159	T	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:34,62:0.65:96
chr14	21860360	rs1998332	G	A	6540.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:110,282:0.72:392
chr14	21861211	rs7152833	C	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr14	21864124	rs10134108	C	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	21869705	rs113076568	C	CT	866.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr14	21871653	rs8022395	C	T	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:93,143:0.61:236
chr14	21874068	rs7155123	G	C	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,56:0.67:84
chr14	21899631	rs10467770	C	T	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:42,83:0.66:125
chr14	21930361	rs60977608	TA	T	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.171;QD=2.26;ReadPosRankSum=0.234;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:76,35:0.32:111
chr14	21930596	rs10143000	G	A	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:72,122:0.63:194
chr14	21950836	rs6571850	T	G	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	21955930	rs1061031	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	21956695	rs3215876	GA	G	1025.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=4.279;QD=6.07;ReadPosRankSum=-1.233;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:116,53:0.31:169
chr14	21957159	rs12880071	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr14	21960408	rs3737050	A	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	21960816	rs1060722	T	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:24,56:0.70:80
chr14	21960969	rs7617	G	A	5284.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:146,225:0.61:371
chr14	21967109	rs1061026	T	G	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.939;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=2.528;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:159,54:0.25:213
chr14	21967916	rs1139130	A	G	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:403,210:0.34:613
chr14	21968876	rs3752411	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:148,106:0.42:254
chr14	21971246	rs17106830	G	A	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:117,80:0.41:197
chr14	21971729	rs2242526	C	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:148,66:0.31:214
chr14	21993498	rs1263811	G	A	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	22037905	rs8009501	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr14	22038525	rs11626693	G	T	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:66,135:0.67:201
chr14	22038659	rs17792778	T	C	4185.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:73,177:0.71:250
chr14	22038915	rs4982462	A	G	3319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=-0.456;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:51,145:0.74:196
chr14	22133648	rs2874103	G	A	13286.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr14	22133997	rs970382	A	G	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	22167296	rs6572018	G	C	8914.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr14	22192106	rs926027	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.52;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	22237127	rs760008	C	T	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	22279809	rs2856411	A	C	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	22293510	rs2178782	T	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	22293554	rs35339724	G	GC	4928.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	22337119	rs909075	G	C	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	22337181	rs909076	C	T	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	22337393	rs876093	G	A	8678.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:2,315:0.99:317
chr14	22470693	rs5807105	T	TA	3080.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr14	22509188	rs4982545	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	22555013	rs2272549	T	C	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	22573582	rs2075498	A	C	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	22573824	rs112427980	T	TA	971.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.093;MLEAC=2;MLEAF=1.000;MQ=67.26;MQRankSum=1.845;QD=23.14;ReadPosRankSum=0.826;SOR=1.718;set=HC	GT:AD:AF:DP	1/1:1,41:0.98:42
chr14	22573825	rs11408894	T	A	1372.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.11;QD=31.92;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr14	22573825	.	TA	AA	935	.	AC=1;AF=0.500;AN=2;FR=1.0000,1.0000;HP=7;HapScore=1;MGOF=0;MMLQ=28;MQ=66.71;NF=14,5;NR=27,26;PP=935,744;QD=23.6529564036;SC=GACTCTTTTTTAAAAAAACAG;SbPval=0.7;Source=Platypus;TC=45;TCF=17;TCR=28;TR=41,31;WE=22573833;WS=22573814;set=Platypus	GT:AD:AF:DP	0/1:4,41:0.91:45
chr14	22573825	.	TA	TAA	935	.	AC=1;AF=0.500;AN=2;FR=1.0000,1.0000;HP=7;HapScore=1;MGOF=0;MMLQ=28;MQ=66.71;NF=14,5;NR=27,26;PP=935,744;QD=23.6529564036;SC=GACTCTTTTTTAAAAAAACAG;SbPval=0.7;Source=Platypus;TC=45;TCF=17;TCR=28;TR=41,31;WE=22573833;WS=22573814;set=Platypus	GT:AD:AF:DP	0/1:9,31:0.78:40
chr14	22580570	rs1040301	C	G	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	22580623	rs1040302	G	T	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	22600863	rs3811291	G	A	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	22616554	rs34355797	C	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	22631217	rs2075492	C	T	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	22631678	rs2075493	C	T	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	22636784	rs11157435	A	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	22636954	rs11157437	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	22690133	rs17198040	T	C	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	22690191	rs17198047	G	A	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	22690209	rs2272551	A	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	22695084	rs4982579	C	T	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	22739862	rs2075500	A	T	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	22740245	rs2075501	A	G	8637.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	22740270	rs2075502	G	A	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	22749189	rs35972042	T	C	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	22749282	rs2075503	G	C	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	22749742	rs4435168	T	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	22887459	rs3216790	CG	C	6099.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	22891883	rs2072616	G	C	6238.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr14	22924531	rs760020	C	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	22942890	rs2254272	G	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	22947814	rs227858	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	22948471	rs227859	T	C	7360.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr14	22952088	rs227861	G	A	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	22958350	rs3833810	ATGCC	A	1754.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	22961854	rs17255862	A	G	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	22963632	rs11372266	G	GC	674.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	22964840	rs137998884	T	TG	1682.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	22965118	rs11334443	TC	T	1009.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	22965144	rs11334442	AC	A	742.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	22972622	rs226990	A	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	22972742	rs2170810	G	A	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=26.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr14	22972783	rs5807141	AC	A	6016.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	22972815	rs2170811	C	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	22972844	rs5020726	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	22973923	rs4343183	T	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	22973960	rs4343184	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	22974041	rs4343185	T	G	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=27.48;SOR=1.252;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	22974150	rs11324184	TC	T	4917.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	22974256	rs3811207	A	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr14	22975700	rs969914	T	G	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	22975728	rs3794450	G	A	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=26.80;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	22975755	rs3794451	T	C	1836.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.289;QD=32.80;ReadPosRankSum=0.177;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr14	22975756	rs112338851	G	GCACACACA,GCACACACACA	2311.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=70.05;SOR=1.981;set=HC	GT:AD:AF:DP	1/2:0,10,23:0.30,0.70:33
chr14	22976559	rs1872160	A	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	22976790	rs170543	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	22978335	rs226997	C	T	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=25.79;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	22978451	rs11443893	G	GC	2645.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	22978577	rs226999	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	22979847	rs5807144	G	GA	495.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=3.459;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:10,34:0.77:44
chr14	22982069	rs11444527	A	AG	282.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	22984499	rs227027	C	T	1523.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	22984500	rs144430862	G	GGTT	1514.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	22985463	rs227029	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	22985487	rs11453171	A	AC	1776.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	22988022	rs227009	C	G	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	22988748	rs227010	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	22989292	rs3811199	A	T	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	22990844	rs11624650	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	22990930	rs11380759	A	AT	5148.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	22993278	rs5807151	A	AG	1364.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	22994810	rs33919257	T	TC	349.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	22998590	rs5807161	AG	A	2961.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	22998619	rs5807162	AC	A	2200.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	22999179	rs11412657	T	TC	3432.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	22999202	rs11412658	A	AG	4032.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	23000185	rs227004	C	T	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr14	23002265	rs11289756	GC	G	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	23005041	rs5807163	A	AG	6210.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	23006663	rs11396434	G	GC	775.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	23006674	rs1154157	G	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	23009291	rs1263637	G	C	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	23011096	rs1263639	T	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	23012873	rs56158321	C	A	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=10.69;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:0,4:1.00:4
chr14	23012926	rs11627600	T	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	23013878	rs56031439	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	23014062	rs1263641	G	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	23014106	rs7153643	C	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	23020688	rs11462449	G	GC	7737.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr14	23020706	rs17461	C	A	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr14	23020820	rs5807168	G	GC	10585.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	23020825	rs3699	G	C	10768.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	23026369	rs33982989	C	CG	840.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=60.42;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	23027743	rs4982639	G	C	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	23044002	rs7621	G	T	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	23058084	rs1051101	A	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	23074899	rs1242924	C	T	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	23078969	rs140776429	C	CT	194.87	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr14	23079730	rs1242933	A	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	23102626	rs11846290	G	A	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	23102784	rs1753429	A	G	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	23102882	rs1681596	C	A	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	23102896	rs1681597	A	G	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	23102969	rs1753430	G	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	23103040	rs3829405	C	T	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	23103282	rs3751481	T	C	7487.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr14	23103347	rs3751482	T	C	13182.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr14	23103354	rs3751483	AC	GT	13432.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr14	23103743	rs56305436	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	23235697	rs1957373	C	T	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	23235808	rs1957374	G	A	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr14	23236524	rs8572	C	T	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr14	23239512	rs2075846	A	G	6074.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr14	23239880	rs1957502	G	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	23242828	rs1061040	T	C	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	23245301	rs3850290	T	C	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	23286343	rs10130537	T	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	23286350	rs111507412	T	TATTTTTTA	669.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=44.65;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	23286528	rs150800938	TTTTTA	T	1565.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=42.32;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	23299135	rs1135641	G	T	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	23299286	rs4982685	T	C	5503.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	23300095	rs9646148	T	G	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	23302585	rs12050397	T	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	23306048	rs1042703	C	T	10582.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr14	23311042	rs17879412	CT	C	1884.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	23311044	rs57542488	T	C	1893.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	23312594	rs1042704	G	A	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr14	23314675	rs911912	C	T	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	23315331	rs743257	T	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	23342735	.	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=3.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=1.137;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:110,28:0.20:138
chr14	23352464	.	TGCACACGCACAC	T	8430.73	.	AC=2;AF=1.00;AN=2;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	23355548	rs3751490	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	23391913	rs8007089	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	23415990	rs11414358	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-1.939;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr14	23424186	rs2016392	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	23444084	rs61737805	C	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	23456315	rs1043675	T	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	23459156	rs11624528	G	A	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	23496860	.	G	GA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.068;QD=0.63;ReadPosRankSum=1.567;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr14	23504238	rs4144360	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	23511357	rs4981456	G	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	23530622	rs60168438	T	C	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr14	23548783	rs148403158	A	AGAACGT	4427.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	23549319	rs1885097	A	G	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	23549379	rs941719	C	G	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	23549785	rs3811182	T	C	8408.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr14	23550126	rs4982727	T	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	23550887	rs717984	C	A	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	23559973	rs8020434	T	C	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	23571671	rs4444236	A	T	7524.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr14	23572776	rs148655160	T	TAAAACAAAAC	1220.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	23574095	.	GGCA	G	1357	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=24;MQ=60.04;NF=3;NR=25;PP=1357;QD=48.6785714286;SC=GACTAGTGGCGGCAGCAGCAG;SbPval=0.83;Source=Platypus;TC=37;TCF=6;TCR=31;TR=28;WE=23574105;WS=23574085;set=Platypus	GT:AD:AF:DP	1/1:9,28:0.76:37
chr14	23574112	rs57331962	CA	C	3278.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.84;QD=42.58;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	23574114	rs55686792	GCA	G	3278.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=42.04;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	23574116	.	A	G	732	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.6868;HP=1;HapScore=1;MGOF=24;MMLQ=24;MQ=60.41;NF=28;NR=27;PP=732;QD=13.9412947736;SC=CAGCAGCAGCAGCAGCAGCAG;SbPval=0.57;Source=Platypus;TC=64;TCF=32;TCR=32;TR=55;WE=23574124;WS=23574106;set=Platypus	GT:AD:AF:DP	0/1:9,55:0.86:64
chr14	23596320	rs761874	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	23598952	rs7157021	A	G	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	23600662	rs12436035	G	T	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	23607271	rs1569951	C	T	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	23609916	rs10151002	A	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	23612489	rs2273394	C	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	23624583	rs8011016	C	T	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	23727902	rs35193725	CTT	C	2006.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;QD=40.13;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	23727919	rs8015556	T	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	23729188	rs2144038	T	C	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	23729750	rs2064483	G	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	23731855	rs139713000	C	CT	2965.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr14	23732091	rs11625337	AT	GC	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr14	23732300	rs34260336	G	GT	593.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.599;QD=12.37;ReadPosRankSum=0.794;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:9,39:0.81:48
chr14	23733725	rs3811180	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	23733978	rs59984693	GT	G	348.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	23734032	rs11628689	T	A	356.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	23734037	rs5807215	T	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	23744826	rs67447855	TTCC	T	3490.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	23746269	rs1057119	C	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	23755270	.	GC	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr14	23777374	rs910332	A	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	23789096	rs10640563	C	CTT	3606.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	23792019	rs8020117	T	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	23793305	rs45528934	C	T	7904.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr14	23816998	rs12896494	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	23829958	rs2231800	G	A	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	23856896	rs178642	A	G	12041.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr14	23858271	rs193922652	AG	A	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=27.03;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	23872666	rs434273	T	C	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	23892645	rs10545532	AAC	A	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=10.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.241;SOR=2.355;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr14	23924704	rs2331984	G	A	95.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	23924767	rs60519724	AT	A	367.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	23924818	rs8005802	C	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	23924830	rs10131038	A	G	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	23938813	rs8015781	A	G	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	23939927	rs5807217	GT	G	101.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.19;ReadPosRankSum=1.501;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr14	23940081	rs1028587	A	G	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	23940086	rs1028588	A	G	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	23940089	rs3215682	AC	A	4581.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	23944505	rs2236260	G	A	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.94;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	23944514	rs2236261	C	A	5394.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	23945366	rs2295706	A	G	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	23947374	rs1956950	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	23992296	rs223123	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	23992742	rs223124	T	G	9237.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr14	23994517	rs4982766	A	G	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	23996772	rs8016202	A	G	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	23999520	rs7150257	A	G	4854.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	23999627	rs35092523	TA	T	6100.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	24002459	rs142802231	GGAGGA	G	852.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	24002887	rs3742489	G	T	9764.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr14	24033027	rs12897422	G	A	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	24107922	rs3818304	G	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	24436381	rs33966071	GA	G	2402.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.20;MQRankSum=-0.319;QD=17.29;ReadPosRankSum=2.034;SOR=0.648;set=HC	GT:AD:AF:DP	1/1:14,125:0.90:139
chr14	24439132	rs373068733	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr14	24439567	.	C	G	188	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=12;HapScore=2;MGOF=21;MMLQ=22;MQ=53.49;NF=0;NR=14;PP=188;QD=15.9122294677;SC=CGGTGGGGGGCGGGGGGCCGA;SbPval=1.0;Source=Platypus;TC=36;TCF=10;TCR=26;TR=14;WE=24439575;WS=24439557;set=Platypus	GT:AD:AF:DP	0/1:22,14:0.39:36
chr14	24473478	.	TA	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.053;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr14	24476689	.	T	TGGG	411.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.83;QD=31.67;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	24512897	rs62000819	C	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	24519959	rs6573541	T	C	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	24522821	rs9972282	C	T	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	24523594	rs11158525	G	A	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	24525634	rs4982851	C	A	11955.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr14	24525782	rs4982852	A	G	8809.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr14	24526287	rs7161473	G	C	7356.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	24526593	rs12431698	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	24529890	rs1951635	A	G	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	24533539	rs10146906	C	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	24542458	rs3742497	T	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	24543873	rs2025256	G	A	5881.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	24544248	rs2073350	C	T	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	24545366	rs2070342	T	C	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	24545835	rs45621931	C	T	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr14	24545984	rs2070345	G	C	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	24563212	rs4982856	T	C	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	24563339	rs4982857	A	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	24567304	rs2759409	C	A	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	24567498	rs3021119	A	C	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr14	24614361	rs7146672	T	G	5564.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr14	24646406	rs10690822	G	GGAA	3570.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	24679877	rs2295322	C	T	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	24702987	rs11158615	A	G	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	24710819	rs111384535	C	CA	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.259;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:37,22:0.37:59
chr14	24718379	rs41294726	TCTCCGGGAGCCCTGGACTCCCC	T	2453.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	24718515	rs2229463	G	A	7287.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	24739055	rs2295313	T	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	24761690	rs1051883	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	24765622	rs2295307	G	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	24765684	rs2295306	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	24769849	rs113258190	A	AGAGGAG,AGAG	5633.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=182;set=Intersection	GT:AF:DP	1/1:0.97:135
chr14	24771137	rs4247000	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	24771256	rs4247001	T	C	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	24772822	rs4982894	G	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	24772922	rs4982895	C	T	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	24791136	rs4981504	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	24793600	rs1884366	G	A	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	24795115	rs11622527	G	T	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	24795231	rs67156008	CCA	C	8583.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	24795237	rs55970272	T	C	8785.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr14	24795258	rs11622863	C	T	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	24800879	rs3181256	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	24801635	rs1950502	A	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	24801956	rs2332322	G	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	24802263	rs8003158	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	24803956	rs1124644	A	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	24806229	rs724165	G	A	6921.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	24806800	rs1950501	G	C	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	24808168	rs3181248	G	A	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	24835017	rs11362560	CG	C	391.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	24839083	rs2229309	G	C	6845.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	24843620	rs2295298	T	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	24843699	rs12890614	C	T	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	24845154	rs12880769	C	A	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	24845841	rs7149586	T	C	9898.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr14	24846757	rs2243891	A	G	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	24882373	rs3818251	G	A	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	24882440	rs4982909	G	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	24882805	rs10146609	T	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	24883887	rs8017377	G	A	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	24887302	rs201911127	CA	C	569.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	24887462	rs3814811	T	C	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	24898558	rs2273632	C	T	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	24898693	rs2273631	C	T	6449.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	24898696	rs2273630	T	C	6449.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	24898751	rs2273629	G	A	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	24898780	rs5025771	C	G	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	24900209	rs1956905	C	G	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	24901249	rs3742520	A	C	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	24901276	rs7151995	G	T	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	24901844	rs2255591	A	G	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	24905533	rs2277488	G	A	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr14	24905548	rs2277489	G	A	7233.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr14	24909281	rs1043839	C	T	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	24909362	rs1043831	T	C	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	24909475	rs3211056	C	G	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	24909731	rs2273628	C	T	8053.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr14	24910210	rs712487	C	A	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr14	24910317	rs10668100	C	CTT	2503.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	24910846	rs11628143	C	T	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	24910876	rs11158703	G	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	24910973	rs11625819	TT	GA	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	24911116	rs11158704	C	T	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	24911169	rs11158705	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	24911764	rs1956903	G	A	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	24911852	rs12897925	C	G	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	24970942	rs4600392	A	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	24975435	rs5249	G	T	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	24975509	rs1885108	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	25078610	rs66505306	G	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	25078914	rs1957526	A	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	25100110	rs8192919	G	A	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	25100247	rs2236337	T	C	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	25100282	rs2236338	A	G	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	25100933	rs6573911	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	25101548	rs1126639	G	A	96.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	25101589	rs11539752	G	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	25101629	rs10909625	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.50;QD=26.70;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	25101706	rs10873219	G	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	25101878	rs8192918	C	CT	5987.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	25102056	rs9671454	G	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	25103409	rs2273843	T	C	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	25103414	rs2273844	G	A	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	25287095	rs854398	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	25288212	rs71405872	A	C	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	25288227	rs749594	T	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	26939474	rs1245213	T	A	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	29242271	rs35069942	AT	A	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-1.810;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr14	29247285	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.416;QD=3.70;ReadPosRankSum=1.015;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr14	29261309	rs56025822	A	AAAC	9666.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr14	30047580	rs2273815	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	30063202	rs2273814	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	30098349	rs1191601	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	30102025	rs1209180	T	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	30103441	rs1191599	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	31191543	.	A	G	113.03	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	31344039	rs11555426	A	G	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr14	31354374	rs12881068	A	T	1870.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=-0.931;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:1,72:0.99:73
chr14	31359024	rs13122	A	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	31364283	.	AAAG	A	42.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.444;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.34;ReadPosRankSum=-0.000;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	31364286	.	G	A	100.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.60;ReadPosRankSum=-0.545;SOR=3.229;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	31364288	.	AGAAGAAGAAGAG	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.53;ReadPosRankSum=-0.000;SOR=2.795;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr14	31535603	rs6571386	G	C	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	31538984	rs7155228	C	G	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	31542391	rs140738043	GA	G	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.70;ReadPosRankSum=-2.260;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	31582380	rs1315794	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	31582526	rs2273483	T	C	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	31583512	rs61976859	C	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.16;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	31597685	rs7157007	C	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	31610939	rs12888959	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	31625994	rs35553721	CA	C	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.680;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=15.777;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.266;SOR=0.023;set=HC	GT:AD:AF:DP	0/1:17,50:0.75:67
chr14	31647241	rs2274201	G	A	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	31647448	rs34666986	G	A	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	31782394	rs61754286	G	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	31793053	rs57656564	GAT	G	1742.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr14	31806943	rs4595710	T	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	31809486	rs8012940	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	31809568	rs11408327	G	GA	2636.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	31819047	rs3736918	C	T	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	31819913	rs7158257	A	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	31819966	rs10602248	TTTTG	T	822.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	31828076	rs942907	A	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	31841162	rs5025288	T	C	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	31858025	rs3887865	C	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	31858209	rs7157977	C	T	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	31863225	rs17097870	G	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	31864300	rs7142126	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	31864485	rs7141532	G	C	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	31952744	rs17097918	C	T	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	32047217	rs7142098	T	C	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	32123347	rs4981874	A	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	32295772	rs17379143	T	A	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	32296018	rs1540425	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	32315901	rs8006872	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	32414145	rs1278926	C	A	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	32414386	rs1278927	C	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	32414463	rs1278928	T	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	32419235	rs1278941	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	32419331	rs1278942	C	T	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	32419398	rs2236532	G	A	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	32419548	rs1278943	C	T	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	32562179	rs146041775	T	C	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	32562652	rs148845374	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	32563640	rs8004384	A	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	33015014	rs7150894	G	A	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	33046388	rs1950703	A	G	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	33046471	rs768787	T	G	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	33147414	rs1950697	C	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	33147765	rs2273417	C	A	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	33165084	rs3742927	A	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	33165182	rs3742929	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	33242863	rs2273163	T	C	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	33525317	rs35719018	G	GA	707.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	34047414	rs1958541	T	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	34149997	rs2297117	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	34243477	rs8019077	T	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	34263034	rs36025922	TAAA	T	2287.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=34.66;SOR=2.137;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	34396100	rs10137361	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	34396358	rs145933066	G	GATTT	161.87	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.31;QD=32.37;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	34985645	rs7797	G	A	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	34993859	rs111420332	A	ATGTGTGTG,ATGTGTGTGTG	1405.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=63;set=Intersection	GT:AF:DP	1/2:0.35,0.65:49
chr14	34993863	rs61981524	A	G	2630.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	34993888	.	T	TGTGTGTGTGA	2995	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=1;MGOF=28;MMLQ=28;MQ=58.87;NF=10;NR=13;PP=2995;QD=20;SC=TGTGTGTGTGTCCTTCATCCA;SbPval=0.35;Source=Platypus;TC=73;TCF=27;TCR=46;TR=23;WE=34993896;WS=34993878;set=Platypus	GT:AD:AF:DP	0/1:50,23:0.32:73
chr14	34998705	rs12147949	T	C	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr14	35037008	rs11156848	T	C	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	35045136	rs34357905	G	GT	224.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=0.160;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr14	35050586	rs4403967	G	T	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	35062312	rs12432539	C	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	35073261	rs77834149	GA	G	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.550;QD=1.70;ReadPosRankSum=1.031;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr14	35075022	rs7151774	G	T	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	35182406	rs35219728	GATA	G	4287.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	35183548	rs10149653	C	A	170.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	35237939	.	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.039;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr14	35343629	rs2145031	A	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	35476673	rs28456062	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	35477785	rs1712351	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	35515606	rs4007475	TGG	T	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	35515953	rs201725571	TC	T	11563.73	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr14	35576458	rs10132769	A	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr14	35596092	rs10147080	C	A	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	35735967	rs11156878	A	G	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	36004075	rs1958260	A	G	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	36044337	rs61622892	G	GA	366.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;QD=19.30;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	36096255	rs34349314	G	GA	523.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.978;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.567;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:8,34:0.81:42
chr14	36121087	rs35892589	CA	C	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	36159218	.	G	GA	38.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.46;ReadPosRankSum=-0.000;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr14	36231816	rs11847872	G	A	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	36240374	.	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-2.720;QD=4.83;ReadPosRankSum=1.024;SOR=1.567;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr14	36278000	rs148182075	G	A	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	36334030	rs12890607	G	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	36334905	.	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.780;QD=0.72;ReadPosRankSum=-1.394;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr14	36768276	rs4900833	T	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	36781037	rs7154340	C	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	36789729	rs3168891	T	G	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	36789775	rs2899849	A	T	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	36789795	rs11558802	G	A	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.63;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	36840650	rs3742592	A	T	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr14	36840695	rs3742593	A	G	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	36944188	rs1012914	G	A	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	37050233	.	G	A	633.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr14	37194681	.	A	AAAAT	509.86	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr14	37344229	rs5807914	A	AG	4031.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	37344275	rs712384	C	T	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	37641880	rs1403	C	A	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	37838604	rs35277854	C	CA	538.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	38014928	rs17179204	C	T	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	38016099	rs991786	C	T	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	38016179	rs5807955	G	GA	425.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	38060646	rs33984772	C	T	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	38092025	rs117711529	GAG	CTC	6480.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	38092289	rs35036497	GATA	G	2339.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	38149606	rs74630859	C	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	38193960	rs34548330	G	T	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	38194107	rs34543736	A	G	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	38194294	rs71407722	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	38205027	rs1570399	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	38206818	rs4901157	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	38207008	rs11439106	A	AT	390.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	38207018	rs17107021	A	T	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	38218872	rs17768594	T	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	38260089	rs7153624	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	38264358	rs969446	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	38265344	rs1951639	T	A	281.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.31;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	38277999	rs4901284	C	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	38679473	rs2228497	C	T	10706.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr14	39502539	rs11418467	G	GA	1030.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	39502626	rs11283010	A	AAATAGAAC	362.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	39511952	rs3837584	CT	C	746.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	39512122	rs4902326	T	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	39514231	rs1884384	T	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	39517691	rs4902344	T	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	39524614	rs11301994	AT	A	79.50	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr14	39543814	rs147995893	T	TAAG	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	39554893	rs66970820	TAC	T	890.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.20;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	39556185	rs8018720	G	C	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	39565403	rs3818163	T	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	39583481	rs2277458	A	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	39587348	rs10136536	A	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	39591081	rs200666636	T	TG	377.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.48;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	39591083	.	A	T	386.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.23;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	39591613	rs60205535	G	GT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.253;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr14	39602849	.	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.386;QD=2.19;ReadPosRankSum=1.405;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr14	39605542	rs9322993	T	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	39620788	rs8003485	A	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	39620936	rs8003807	C	T	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	39623533	rs12147991	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	39627695	rs9322994	C	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	39627747	rs761804	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	39644498	rs1061583	G	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	39645863	rs2252040	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	39645921	rs3215670	G	GC	222.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	39650234	rs2180792	A	T	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	39716808	rs3825549	T	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	39736680	rs7140561	T	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	39748480	rs7158558	G	A	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	39763006	rs956109	T	C	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	39773639	rs2274398	G	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	39777676	rs1950952	G	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	39784012	.	A	ATGTGTGTGTG	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DP=39;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.000;QD=15.36;ReadPosRankSum=1.242;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr14	39784014	rs2415539	A	G	994.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=38.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	39784042	rs2415540	A	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	39784965	rs10150863	G	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	39796048	rs36031495	GT	G	1295.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	39815250	rs141233863	TTTC	T	2773.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	39818145	rs1060878	G	A	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	39818222	rs7156249	G	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	39856043	rs10146207	G	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	39870296	rs10146622	T	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	39871017	rs7156962	T	C	6404.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr14	39871742	rs7158282	T	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	39900836	rs45453296	A	G	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr14	39901157	rs61999077	C	A	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	42998026	rs10148466	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	44974123	.	TCTCCTCAGCTGGTAGAGACTGAACTTCAGCAGGGGC	T	639.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	45512771	rs72672914	C	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	45571012	.	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-1.477;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr14	47310983	rs11844549	T	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.41;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	47341055	rs1491910	C	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	47341131	rs2933208	C	G	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	47528470	rs8009302	T	C	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	47528551	rs10144183	T	A	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	47530841	rs7147260	A	C	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	47530845	rs7147741	G	C	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=4.875;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	47687187	rs8011854	A	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	50032993	rs10149195	G	C	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	50044392	rs2883438	T	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	50065359	rs2281837	C	G	12465.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr14	50065717	rs2281836	G	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	50068299	rs11625804	C	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	50069282	rs2354444	A	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	50070384	rs7146398	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	50070427	.	AA	TT	199	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=20;HapScore=2;MGOF=59;MMLQ=29;MQ=51.64;NF=0;NR=4;PP=199;QD=63.1169687156;SC=TTTTTTTTTTAATGAGACAGA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=50070436;WS=50070417;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50074014	rs2354445	G	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	50080871	rs6572592	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	50087753	rs7519	T	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	50092471	rs9989177	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	50094913	rs2985696	C	A	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	50100386	rs2985687	T	C	6078.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr14	50100683	rs2985686	C	G	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	50101370	rs2985685	G	A	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr14	50101682	rs2985684	C	G	8235.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr14	50175792	rs11157703	T	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	50192609	rs10147220	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	50195679	rs4301946	A	G	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	50199337	rs60013005	A	AT	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	50199375	rs10146753	A	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	50206702	rs4898631	G	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	50241258	rs4499141	A	C	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	50244835	rs4900949	C	T	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	50245374	rs6572613	C	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	50247290	rs4900952	G	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	50251369	rs10143621	A	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	50251888	rs8009346	C	T	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	50280577	rs3126194	T	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	50280688	rs3126195	T	A	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	50298153	rs11365862	AT	A	233.79	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr14	50298962	rs3100906	T	A	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.149;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	50299051	rs56170989	CT	C	189.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.662;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr14	50300310	rs3100904	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	50319327	rs3126160	T	C	6575.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr14	50319499	rs3100887	G	T	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr14	50459598	rs61748277	G	A	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	50459609	rs10134002	T	C	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	50459673	rs10134096	T	C	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	50474006	rs4898643	C	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	50477643	rs4900978	G	C	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	50555664	rs2883738	G	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	50585574	rs10658395	C	CA	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.54;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	50596862	rs3759597	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	50600698	rs147458500	C	CA	75.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	50605267	rs35961944	A	AT	399.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=15.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=-1.051;SOR=1.970;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr14	50611845	rs2064667	C	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	50612401	rs1014879	T	C	183.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	50612414	rs726797	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	50616878	rs2229869	G	A	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	50619927	rs11628935	A	G	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	50623657	rs3736759	G	A	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:7,89:0.93:96
chr14	50623679	rs3736760	G	A	3304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.99;ReadPosRankSum=-1.633;SOR=1.374;set=HC	GT:AD:AF:DP	0/1:10,104:0.91:114
chr14	50623683	rs3736761	A	G	3304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.99;ReadPosRankSum=-1.573;SOR=1.374;set=HC	GT:AD:AF:DP	0/1:10,104:0.91:114
chr14	50626836	rs4900992	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	50641347	rs10782418	T	G	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	50647250	.	TTAA	T	108.27	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=13.53;SOR=2.526;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr14	50649228	.	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	50666263	rs1955924	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	50670965	rs1075537	G	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	50671020	rs1803661	C	T	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	50704331	rs4901000	C	T	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	50802972	rs10136242	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	50877491	rs1265878	C	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	50886952	rs17122518	C	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	50892498	rs75772037	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	50929508	rs11624731	C	A	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	50930609	.	CAAAAAAAAAAAAAAAAAAAAAAAA	C	270.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.08;ReadPosRankSum=0.282;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr14	50942047	rs12717408	C	T	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	50943034	rs200978623	T	TA	155.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-1.880;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr14	50949196	rs11364906	TA	T	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	50949221	rs111706100	G	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	50952367	rs112014477	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	50971446	rs7146431	C	T	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	51054475	rs77224287	G	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	51057727	rs1060197	G	A	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	51058234	rs2934684	G	T	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	51060452	rs2291672	A	G	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	51062236	.	TTCTC	T,TTC	2729.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=2.917;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.38;ReadPosRankSum=-0.283;SOR=1.872;set=HC	GT:AD:AF:DP	1/2:2,16,69:0.18,0.79:87
chr14	51062270	rs45570436	G	C	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr14	51089837	rs75329155	G	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	51096610	rs3080579	G	GTTCTT	1631.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	51097536	rs2934692	G	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	51107452	rs871643	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	51107737	rs4075253	G	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	51111485	rs36100794	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	51134038	rs45479904	C	G	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	51196142	rs2984274	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	51206021	rs3015485	A	G	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	51208211	rs7153080	C	T	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	51208236	rs76858548	T	TGTA	2869.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	51219099	rs79799330	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	51223106	rs2295846	G	T	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	51223789	rs2073347	C	T	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	51224374	rs12882191	T	G	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	51225132	rs2073349	G	T	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	51228682	rs6572694	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	51230428	rs139832186	ATTCT	A	1435.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;QD=38.80;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	51237701	rs17793018	A	G	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	51239067	rs8020503	C	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	51289874	rs1547077	G	T	1560.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.211;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.402;QD=15.77;ReadPosRankSum=0.853;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:12,87:0.88:99
chr14	51290141	rs9672090	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	51297448	rs201889202	G	GC	216.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	51324884	rs2027343	A	G	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	51324894	rs72242050	AAG	A	2831.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr14	51338875	rs11850408	A	C	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	51344584	rs10672040	C	CAA	867.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	51347023	rs12889998	T	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	51347107	rs2185300	G	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	51348281	.	C	CT	176.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=0.596;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr14	51353493	rs7158183	T	C	218.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	51355517	rs10144606	C	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	51382358	rs1890701	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	51448413	rs10150121	T	C	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	51475794	rs2297889	A	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	51710508	rs35110538	T	TA	1260.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	51710551	rs10131881	A	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr14	51712092	rs4606635	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	51716161	rs59489282	GT	G	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr14	51716188	rs7161242	T	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	51716467	rs7160810	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	51720906	rs11157811	T	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	52165083	rs6572784	T	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	52179059	rs4901146	T	C	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	52182081	rs731715	T	A	7761.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr14	52186972	rs2277494	A	G	10857.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:1,411:1.00:412
chr14	52194407	rs4433726	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	52294397	rs6572795	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	52308314	rs10498437	G	A	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	52308447	rs17124603	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	52381114	rs1253685	T	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	52383228	.	G	GA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=1.568;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr14	52477835	rs1151579	G	A	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	52495375	rs7144352	C	T	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	52496387	rs2273430	C	A	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr14	52496407	rs2273431	C	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	52505360	rs753051	A	G	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	52505375	rs753050	A	G	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	52505771	rs2029978	TT	AG	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	52505811	rs2029976	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	52507429	rs3742536	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	52509101	rs1982963	G	A	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	52509483	rs56834750	TG	CA	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	52520368	rs2101919	C	T	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	52520853	rs904059	A	G	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	52534997	rs7151874	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	52535387	rs984051	A	C	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr14	52535415	rs984050	G	A	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	52535648	rs3920038	G	T	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	52536512	rs1497082	T	C	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	52781195	rs1254598	G	A	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr14	52794234	rs708502	T	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	52957731	rs369712294	GA	G	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=7.420;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.672;QD=5.62;ReadPosRankSum=1.226;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr14	53235542	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=1.589;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr14	53235544	rs201363494	TA	T	30.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.542;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr14	53235545	rs2274274	A	T	652.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=1.542;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:9,31:0.78:40
chr14	53250293	rs2296494	G	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	53325090	rs6572868	C	T	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	53326454	rs3818453	C	A	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.35;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	53340666	.	CT	C	38	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=17;HapScore=2;MGOF=16;MMLQ=15;MQ=60.0;NF=4;NR=0;PP=38;QD=10.25;SC=GTTTCACAATCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=53340674;WS=53340658;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	53345266	rs2357946	G	C	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	53345378	rs2357947	G	A	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	53385733	rs35536399	T	TAC	752.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	53386172	rs5808695	A	ATAAT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	53409584	rs7157315	C	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	53513478	rs10599915	AAG	A	5581.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	53522324	rs5808701	T	TA	1829.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	53525392	rs915436	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	53529669	rs4898778	A	T	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	53539471	rs875663	A	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	53619463	rs2358188	G	A	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	53619480	rs140904345	T	TGCCGCC	3515.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	53619544	rs2358189	G	A	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	54415291	rs12898159	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	54418986	rs2761880	T	C	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	54868922	rs202192816	CA	C	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.157;QD=5.06;ReadPosRankSum=1.494;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr14	55154053	rs11626473	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	55168673	rs1022754	A	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	55218435	rs2295822	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	55221345	rs911612	G	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	55241531	rs35827295	CA	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.283;QD=3.28;ReadPosRankSum=0.877;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr14	55454155	rs139807986	C	CATAT,CATATAT	1091.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;MQ=60.32;set=Intersection	GT:AF:DP	1/2:0.22,0.78:27
chr14	55473900	rs9323275	T	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	55473949	.	T	TAA	359.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=-0.201;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr14	55475515	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.835;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr14	55530120	rs3742564	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	55604935	rs4644	C	A	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	55605036	rs4652	A	C	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	55609234	rs2075601	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	55617578	rs35448900	CA	C	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	55619311	rs15870	A	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	55629650	.	T	TA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.424;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr14	55647575	rs11351178	CA	C	1497.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	55647840	rs11622636	C	T	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	55817708	rs10144418	T	C	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	55818517	rs1045002	T	A	10007.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr14	55818706	rs3742569	T	C	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	55836773	rs10136596	A	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	55847466	rs946059	A	G	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	55847573	rs7145727	G	A	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=28.08;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	55848972	rs3783650	A	C	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	55864130	rs8003279	A	G	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	55880918	rs946055	A	G	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	55881276	rs1890256	C	T	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	55902698	.	TA	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.148;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr14	56100160	rs10135907	G	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	56103882	rs10483647	A	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	56108033	rs2341890	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	56111278	rs34100965	CT	C	226.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=0.065;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr14	56126456	rs7160678	C	A	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	56142480	rs3736877	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	56755425	rs34574403	C	CA	239.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	57046829	rs2275025	C	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr14	57052511	rs3737171	G	T	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	57070501	rs10782433	A	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	57072203	rs3818777	T	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	57092038	rs2274706	A	G	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	57099859	rs1041316	G	A	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	57101682	rs913742	A	G	8348.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr14	57113904	.	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=5.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.989;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:57,12:0.17:69
chr14	57116979	rs1958530	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	57672540	rs3742577	T	C	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	57672715	rs3742578	C	T	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	57866623	rs2152360	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	57876265	rs11620639	G	A	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	57938124	rs1152531	C	T	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	57938260	rs1152530	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	57945689	rs1152525	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	57948380	rs1152522	T	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	57957654	rs1203339	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	57957664	rs1203338	T	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.08;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	58047219	rs17093357	G	C	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	58056257	rs1190313	G	T	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	58060862	rs17724076	G	A	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	58471445	rs17094192	C	G	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	58471699	rs727203	T	C	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	58599674	rs149751032	GGT	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.992;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr14	58600107	rs2180520	T	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	58605790	rs3829765	G	A	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	58666882	rs61975916	A	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	58669660	rs75291796	AT	A	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr14	58674823	rs34557633	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.125;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr14	58697795	rs111932447	C	CAG	836.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;MQ=61.07;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	58724817	rs35486640	C	CTT	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	58730626	rs2348071	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	58734282	rs35846334	G	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	58737766	rs8005100	A	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	58758279	rs149972156	TAC	T	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.915;QD=1.84;ReadPosRankSum=-1.548;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:190,35:0.16:225
chr14	58758331	rs11461912	G	GT	7252.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr14	58766617	rs1957038	A	G	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	58770389	rs10145481	C	G	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	58771632	rs7155580	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	58827881	rs140418008	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	58838668	rs1051860	A	G	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr14	58838701	rs1051861	C	T	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	58869510	rs7153357	T	C	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	58875135	.	C	CA	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.026;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr14	58907006	rs138818880	TTC	T	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.829;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr14	58907825	.	AT	A	29	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=8;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=2;NR=1;PP=29;QD=15.3333333333;SC=AATATATACAATTTTTTTTCA;SbPval=0.57;Source=Platypus;TC=4;TCF=3;TCR=1;TR=3;WE=58907833;WS=58907815;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr14	58907908	.	CT	C	99.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=9.97;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	58917225	rs1748970	C	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	58917454	rs1748971	G	A	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	58920240	rs1748975	A	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	58923395	rs1743721	G	A	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	58926527	rs1748980	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	58932772	rs1743716	A	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	58934371	rs1632390	G	A	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	58937416	rs1748986	T	C	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	58953617	rs1743702	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	58953746	rs1617510	C	G	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	58954588	rs5808973	T	TA	1391.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr14	59105188	rs2003021	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	59112475	rs863091	C	T	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	59113430	rs698025	G	A	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	59789586	rs8021976	A	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	59789727	rs8022614	G	A	5522.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	59797115	rs941883	A	G	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	59797235	rs941884	A	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	59798473	rs2146012	C	G	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	59804999	rs1958180	A	G	8709.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr14	59814502	rs941886	C	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	59820780	rs10713024	AT	A	388.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr14	59834048	rs10130669	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	59978366	rs10635523	A	ATG	5749.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	60004844	rs4261431	C	T	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	60031996	rs1980580	G	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	60032046	rs1980579	A	G	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	60034840	rs982862	G	C	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	60043422	rs4898996	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	60063472	rs6573275	A	G	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	60071972	rs1950787	T	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	60072023	rs1950786	G	A	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	60443929	.	T	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=0.396;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr14	60444652	rs219328	A	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	60451770	rs219341	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	60451816	rs219342	G	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	60468661	rs219369	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	60483598	rs219388	C	T	272.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	60484931	rs219391	C	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	60485240	rs219392	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	60498876	rs219409	C	T	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	60519920	rs95425	C	T	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	60530160	rs201841893	TA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=8.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.879;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr14	60574539	rs12465	A	G	7301.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	60581673	rs35459418	CT	C	1923.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.457;MLEAC=2;MLEAF=1.000;MQ=60.38;MQRankSum=0.604;QD=18.50;ReadPosRankSum=0.513;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:8,96:0.92:104
chr14	60581863	rs219314	G	A	6259.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	60581935	rs150687	C	T	6283.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr14	60582053	rs150688	G	A	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	60616914	.	CA	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=3.184;QD=2.06;ReadPosRankSum=0.472;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:70,32:0.31:102
chr14	60921673	rs1262175	T	C	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	60923783	rs11625921	C	T	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	60928201	rs1956549	G	A	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	60932569	rs10529202	AACACACACACACACACACACAC	A	1092.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	60935281	rs12878738	C	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	60944959	rs11845369	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	60945203	rs11158285	G	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	60975956	rs1956558	T	C	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	60978071	rs1061108	C	G	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	61118783	rs4899014	C	T	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	61124940	rs10143202	A	G	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	61180657	rs3742636	T	G	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	61445967	rs7142228	A	G	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	61446607	.	T	TA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.416;QD=2.33;ReadPosRankSum=-1.034;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr14	61448510	rs2296924	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	61449167	rs2296923	T	C	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	61449328	rs976272	T	A	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	61451329	rs2182985	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	61451589	rs2149303	C	T	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	61453739	rs33922839	C	CT	2299.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	61497147	rs1465146	A	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	61497285	rs1465145	T	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	61509924	rs2296921	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	61747644	rs3196765	A	G	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	61789318	rs1886466	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	61915751	rs2296273	G	A	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	61924092	rs146597366	GGT	G	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-1.299;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr14	61952429	rs1536016	T	C	5964.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	61995673	rs2463117	C	T	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	61995691	.	C	CGTGTGTGTGTGT	412.74	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	61997226	rs1088680	C	T	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	61997393	rs1088679	T	C	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	62037297	rs798792	C	A	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	62205175	rs10138153	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	62208005	rs4902080	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	62211578	rs60361955	CGTGT	C	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	62212675	rs4902082	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	62213848	rs2057482	T	C	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	62213929	rs5809121	A	AT	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	62229113	rs17099207	G	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	62229434	rs7151978	G	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	62234159	rs10145554	A	G	92.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	62235250	rs147257744	CTG	C	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	62462766	rs8019076	T	C	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	62542186	rs35857227	TA	T	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.319;QD=7.48;ReadPosRankSum=-1.173;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr14	62546001	rs1892051	C	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	63174616	rs7161127	T	C	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr14	63179333	rs12435381	C	T	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	63453773	rs1950975	A	G	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	63779846	rs5809192	G	GA	2693.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	63784407	rs11382440	A	AG	8025.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr14	63881729	.	TTA	T	33.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr14	64434652	rs1255891	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	64444876	rs1255896	G	A	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	64449253	rs199597838	AAAG	A	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=0.931;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr14	64457079	rs1255907	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	64457638	rs1255908	T	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	64460536	.	A	ATT	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.82;ReadPosRankSum=0.568;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr14	64462007	rs1255912	A	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr14	64462071	rs1255913	G	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	64464236	rs8009321	C	A	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	64468918	rs12147217	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	64470159	rs4027385	ACT	A	2557.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	64491695	rs4902264	T	C	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	64494278	rs10151127	C	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	64496749	rs4027402	C	T	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	64496872	rs3866737	G	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	64497930	rs4027404	G	A	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	64498037	rs4027405	G	A	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	64501192	rs9783605	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	64519035	rs1890908	A	G	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	64519455	rs3829767	A	G	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	64520416	rs10138253	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	64522550	rs10676670	T	TAATAA	959.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.99;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	64522674	rs8010911	G	C	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	64522843	rs8010699	A	G	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	64523094	rs7153376	G	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	64532107	rs1255972	A	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	64537295	rs1255965	T	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	64537657	rs1255964	G	A	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	64542872	rs1255960	G	A	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	64551688	rs1255953	C	T	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	64564527	rs8007972	C	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	64612845	rs11629287	C	T	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	64612858	rs10151658	C	A	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	64637147	rs7161192	C	A	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	64640665	rs7148122	C	G	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	64655161	rs1255986	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	64656682	rs35676590	A	ATT	552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.42;ReadPosRankSum=0.284;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,24:0.80:30
chr14	64656855	rs2256191	T	C	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	64657543	rs189349163	T	C	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	64657684	rs1255988	C	A	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	64674981	rs1152595	T	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	64676098	rs1152592	A	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	64680848	rs1152591	A	G	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	64681193	rs1152590	C	T	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	64686125	rs35648226	G	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	64686207	rs915057	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	64688175	rs1152588	G	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	64691644	rs35455974	ATT	AT,A	486.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	1/1:0.88:34
chr14	64694195	rs928554	C	T	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	64699816	rs4986938	C	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	64746933	rs34967796	G	GA	323.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr14	64814311	rs1256112	C	T	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	64855041	rs1076991	T	C	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	64879352	rs10678665	A	AT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-1.961;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr14	64882380	rs1950902	A	G	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	64908845	rs2236225	G	A	6981.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr14	64909151	rs2236224	G	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	64911627	rs1256143	T	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	64926433	rs75480958	GTGCT	G	407.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	64935720	rs1256149	C	T	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr14	64988114	rs10624421	C	CAA	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	65007411	.	G	A	849.77	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	65008251	rs1063391	C	T	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	65009534	rs35270454	C	CT	1149.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.530;QD=17.69;ReadPosRankSum=0.832;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:6,59:0.91:65
chr14	65016702	rs7156953	T	G	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	65028728	rs2038271	C	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	65031534	rs6573560	C	T	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	65031572	rs4902293	A	G	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	65032226	rs8007313	C	T	6260.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	65068221	rs11158545	C	A	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	65068330	rs372346293	CTG	C	4823.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	65068333	.	T	C	4831.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.32;QD=44.74;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	65068336	rs369006858	G	A	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.26;QD=46.01;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	65068341	rs377267839	TTCTC	T	4809.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	65068346	.	G	A	4638.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	65289978	rs179338	A	G	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	65470831	rs12587546	A	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	65733748	.	CTTCTTTCTTTCT	C	783.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;MQRankSum=0.694;QD=27.03;ReadPosRankSum=-0.180;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr14	65801811	rs12881755	A	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	65878807	rs1953416	C	T	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr14	66028446	rs2229677	A	G	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	66028505	rs3825639	T	C	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	66082573	rs8012278	A	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	66209190	rs1054218	C	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	66424605	rs7141711	C	A	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	67555878	rs12323748	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	67790332	.	AAT	A	152.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr14	67814219	rs71129819	C	CT	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.849;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr14	67819567	rs10718799	CA	C	573.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=19.12;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	67857290	.	G	A	175.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr14	67912792	rs3742855	A	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	68022410	rs3742868	C	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	68028538	rs11628043	A	G	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	68035879	rs3825725	A	G	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	68038697	rs2236234	C	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	68038729	rs2236233	A	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	68039027	rs2236231	A	G	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	68040389	rs11625701	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	68042255	rs4902490	A	G	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	68042496	rs4902491	A	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	68044005	rs4902492	C	T	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	68045753	rs7152499	T	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	68045840	rs10635755	C	CTTCT	5369.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	68045935	rs6573781	G	A	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	68053802	rs734028	T	C	7880.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr14	68053977	rs6573783	A	C	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	68066949	rs11547225	G	A	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	68066979	rs7154825	C	T	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	68113293	rs742869	G	A	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	68115001	rs3742879	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	68191109	rs11331653	GT	G	289.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.625;QD=11.14;ReadPosRankSum=2.226;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr14	68191368	rs61991867	G	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	68192653	rs7156725	G	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	68196636	rs718212	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	68234539	rs3742883	T	C	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	68236522	rs2295111	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	68241611	rs11158695	A	G	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	68241648	rs141953477	CAAA	C	385.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	68242898	rs12886915	G	A	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.18;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	68244202	rs767972	C	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	68246855	rs2295106	T	A	1477.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	68246876	rs2295107	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	68248281	rs2235962	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	68264867	rs12891164	A	G	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	68265484	rs7160083	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	68273430	rs181576	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	68274020	rs181572	C	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	68331675	rs1474939	A	T	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	68331678	.	CTTTTTTTTTTTTTTTTTTTTTTTTT	C	4385.73	.	AC=2;AF=1.00;AN=2;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.55;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:3,117:0.97:120
chr14	68935789	rs2525505	T	C	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	68944343	rs67962762	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-0.970;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:99,31:0.24:130
chr14	68963746	rs765899	C	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	69012355	rs2525529	C	G	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	69328441	rs393673	A	G	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	69328594	rs412638	G	A	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	69328613	rs440689	C	T	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	69328777	rs34505623	C	CT	147.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;MQRankSum=0.640;QD=11.36;ReadPosRankSum=1.188;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr14	69329116	rs424806	T	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	69329149	rs1742501	C	T	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	69345647	rs12586591	C	T	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	69352230	rs15993	G	A	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	69376658	rs743128	A	C	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	69392264	rs4899272	T	G	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr14	69444661	rs11628773	G	A	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	69445057	rs11620922	G	C	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.925;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	69445118	rs1983700	C	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	69445616	rs59714290	C	CGGGGCTG	951.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.87;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	69445646	rs4902685	A	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	69695792	rs3742899	G	A	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	69697453	rs1013762	C	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	69704553	rs8007859	G	T	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	69704662	rs8008141	G	A	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	69787589	rs7147076	C	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	69792496	rs34996930	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	69792559	rs35024400	C	G	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	69799892	rs1275677	A	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	69813678	rs11625928	A	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	69966850	rs4902723	G	A	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	69967470	rs4902724	C	T	5860.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr14	69988954	rs10146531	T	G	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	69992873	rs8004574	A	G	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	69994473	rs1885400	C	G	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	70037611	rs7494244	A	T	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	70245877	rs113692047	TA	T	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=2.484;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr14	70346689	rs56307916	C	T	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	70459370	rs227419	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	70490264	rs2281663	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	70496919	.	CTT	C,CT	1527.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=2.383;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.748;QD=12.42;ReadPosRankSum=0.236;SOR=1.136;set=HC	GT:AD:AF:DP	1/2:16,39,68:0.32,0.55:123
chr14	70515779	rs61977411	G	A	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	70517985	rs61977412	T	A	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	70522353	rs998919	T	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	70522684	rs10142899	A	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr14	70530378	rs41285486	G	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.28;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	70530706	rs150956	C	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	70634087	rs2114024	A	G	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	70712880	rs2296918	A	C	8074.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr14	70713858	rs61979492	T	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr14	70713992	rs4902799	C	A	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=26.81;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	70714162	rs4899340	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.07;QD=42.53;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	70714172	rs4899341	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.21;QD=42.38;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	70924237	rs3751520	C	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.21;QD=42.57;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	70924249	rs3751521	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.52;QD=40.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	70924462	rs3751523	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	70924501	rs8010994	C	G	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:4,39:0.91:43
chr14	70924852	rs3829455	A	C	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.31;QD=28.53;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	70925257	rs12436346	A	G	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.94;QD=31.76;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	70925818	rs2022624	T	C	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.53;QD=33.48;SOR=1.530;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	70937494	rs8015742	T	G	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	71108942	rs7154268	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	71109153	rs4902834	C	G	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	71109276	rs3742852	G	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	71197755	rs1476610	T	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	71202650	rs4141095	C	T	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	71208996	rs4899368	A	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	71209025	rs4902843	C	A	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	71215729	rs10129495	G	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	71216863	rs10630067	C	CAT	4435.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	71227913	rs3814872	A	C	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	71228000	rs11621281	G	A	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	71275773	rs3832971	GCCT	G	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=3.497;QD=1.58;ReadPosRankSum=-0.292;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr14	71444788	rs3814871	G	A	8192.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr14	71445413	rs4391999	A	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	71455540	rs3829954	A	G	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	71462759	rs56021283	T	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	71485692	rs1859914	A	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	71495288	rs34488204	C	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	71500626	rs11461235	G	GT	511.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	71513930	rs3217014	TG	T	399.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	71517327	.	G	GT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=3.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.029;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:90,26:0.22:116
chr14	71568683	rs34093157	T	A	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	72040525	rs6574016	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	72055468	rs1859643	A	C	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	72117156	rs8017465	T	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	72201985	rs2097887	C	A	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	72932330	.	G	GTGGA	1573.73	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr14	72936954	rs8012037	T	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	72939495	rs10131300	C	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	72939735	rs10131497	C	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	72977054	rs138765558	CAT	C	309.75	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	72977057	.	C	G	318.78	.	AC=2;AF=1.00;ALERT;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	72977081	rs4617784	A	C	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	72977084	rs4346151	A	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	72985396	rs8009343	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	73003180	rs75385708	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	73006865	rs56953388	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=6.091;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.826;QD=1.42;ReadPosRankSum=-0.465;SOR=0.210;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr14	73007198	rs113373446	GA	G	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.749;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.633;QD=2.01;ReadPosRankSum=-1.305;SOR=0.221;set=HC	GT:AD:AF:DP	0/1:69,34:0.33:103
chr14	73008178	rs11628539	A	T	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	73079291	rs10649920	G	GAA	9654.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	73138189	rs1060570	C	A	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr14	73181428	rs4903049	T	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	73190444	rs35285137	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.859;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:68,15:0.18:83
chr14	73198380	.	A	G	1507.77	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	73198506	rs6574094	T	C	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	73220153	rs3742835	C	T	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	73240486	rs8015749	A	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	73346501	.	G	A	1952.77	.	AC=2;AF=1.00;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	73358945	rs11158986	A	C	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	73360819	rs5809598	T	TTGTC	12644.73	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr14	73360949	rs2215901	A	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	73408355	rs3742832	G	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	73425462	rs12882409	G	A	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	73440864	rs12931	C	T	8912.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr14	73459917	rs2333016	C	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	73460109	rs374753534	TA	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.352;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.60;ReadPosRankSum=-0.850;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr14	73465003	rs997667	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	73563899	rs10678855	C	CTTTTT	232.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.18;QD=29.09;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	73572825	rs362429	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	73581074	rs2158581	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	73664853	rs165932	G	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	73712922	rs12895249	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	73716774	rs177393	G	A	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	73719334	rs2242611	G	A	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.482;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	73721162	rs2293796	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	73721775	rs11628713	C	T	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	73727509	rs177389	T	G	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	73728957	rs177387	G	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	73730290	rs177385	C	A	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	73732302	rs177383	C	G	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	73735366	rs4903104	C	T	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	73957682	rs10144461	C	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	73957772	rs10144469	A	G	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	73957981	rs150704374	G	GC	3533.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	73958375	rs758109	T	C	6520.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr14	73958812	rs3813563	T	C	17304.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr14	73959703	rs10631979	C	CTT	1078.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.625;QD=13.65;ReadPosRankSum=0.036;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:20,59:0.75:79
chr14	73961765	rs11365617	CA	C	291.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.45;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	73961821	rs4519287	T	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	73961841	rs1019056	T	C	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	73963383	rs8014577	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	74004639	.	CTG	C	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=401;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.676;QD=1.14;ReadPosRankSum=-0.606;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:278,39:0.12:317
chr14	74340797	rs11159042	A	T	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	74343981	rs45542836	T	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr14	74349227	rs8005140	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	74358703	rs140665239	CCT	C	2437.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	74361126	.	C	CT	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.190;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr14	74364674	rs11381801	C	CA	71.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.15;ReadPosRankSum=-0.792;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr14	74371467	rs35370876	TA	T	586.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=61.13;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	74375956	rs2302136	A	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	74388908	rs1127392	T	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	74399212	rs6574155	C	T	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	74399291	rs2336547	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	74401030	rs45609933	G	A	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	74404756	rs28927675	T	C	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	74407811	.	CTT	C	301.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.000;QD=21.55;ReadPosRankSum=0.319;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr14	74409032	rs740506	G	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	74413129	rs7146634	C	G	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	74413420	rs7148485	T	C	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	74416600	rs11621743	T	C	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	74416649	.	CG	C	4329.73	.	AC=2;AF=1.00;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	74424938	rs3180946	T	C	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	74425056	rs3764859	C	A	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	74428286	rs7141392	A	G	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	74428445	rs8500	G	A	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	74433552	rs13743	A	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	74433859	rs3742813	T	C	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	74439495	rs11623794	G	A	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	74440441	rs11623041	T	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	74441537	rs2074933	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	74441684	rs2074932	G	A	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	74444090	rs201751093	G	GA	317.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=-1.264;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr14	74449664	rs12431489	A	G	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	74454819	rs12434581	T	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	74527203	rs8017248	G	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	74545063	.	C	CT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=5.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.623;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr14	74665543	rs10145171	G	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	74726515	rs11383441	G	GC	1801.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	74753278	rs929449	T	C	12626.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr14	74759006	rs3742801	C	T	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	74759301	rs4148078	G	T	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	74759477	rs4148077	C	T	8304.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr14	74766352	rs2301345	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	74767128	rs7158118	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	74970448	rs5809669	G	GC	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	74972008	rs10146812	A	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	74973556	.	A	ATGTG	1188.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=44.03;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	74973582	.	G	GTGTGCGCGCGCA	924	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=24;MQ=60.13;NF=6;NR=10;PP=924;QD=58.0;SC=GTGTGTGTGTGCGCGCGCGCG;SbPval=0.36;Source=Platypus;TC=20;TCF=6;TCR=14;TR=16;WE=74973591;WS=74973572;set=Platypus	GT:AD:AF:DP	0/1:4,16:0.80:20
chr14	74973583	.	C	T	399	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=2;HapScore=2;MGOF=18;MMLQ=24;MQ=59.46;NF=10;NR=8;PP=399;QD=24.0984006971;SC=TGTGTGTGTGCGCGCGCGCGT;SbPval=0.69;Source=Platypus;TC=25;TCF=13;TCR=12;TR=18;WE=74973591;WS=74973572;set=Platypus	GT:AD:AF:DP	1/1:7,18:0.72:25
chr14	74973583	.	C	CGCGCGCAT	1207.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=43.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	74976986	rs7160756	A	G	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	74989433	rs699371	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	74991855	rs862031	A	G	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	74991959	rs862030	T	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	74992800	rs699374	A	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	74992861	rs699375	A	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	74999108	rs862025	C	T	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	75002607	rs3742794	G	T	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	75016482	rs2196861	T	C	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	75017650	rs934999	G	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	75019157	rs11622992	T	C	5942.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	75070493	rs3742793	G	C	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	75137664	rs2302832	T	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	75151047	rs9671386	G	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	75182937	rs2287400	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	75200697	rs3825708	G	A	5231.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	75230953	rs45599947	C	T	9394.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr14	75276079	rs957345	C	G	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	75278211	rs12588415	G	A	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	75278302	rs8022046	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	75279395	rs2302834	T	A	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	75282873	rs200535544	ATT	A,AT	1261.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.679;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.30;MQRankSum=0.259;QD=18.29;ReadPosRankSum=1.700;SOR=0.296;set=HC	GT:AD:AF:DP	1/2:2,22,45:0.32,0.65:69
chr14	75373626	rs78810423	C	CTGAT	5813.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	75378296	rs3081755	GTGTGTA	G	2052.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	75378331	rs759057	T	C	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	75386530	rs60425478	T	TG,TGG	851.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;QD=29.37;SOR=2.226;set=HC	GT:AD:AF:DP	1/2:0,15,14:0.52,0.48:29
chr14	75412908	rs8005277	A	G	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr14	75415194	rs2159907	G	C	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	75416000	rs2268614	C	T	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	75470446	rs175041	C	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	75485406	rs175052	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	75485489	rs175053	A	G	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	75489632	rs175057	C	T	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.294;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	75497130	rs175070	C	A	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	75505016	rs175075	A	G	5031.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	75506549	.	CATATATATATATATATAT	C,CAT	3105.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.87;SOR=2.925;set=HC	GT:AD:AF:DP	1/2:1,11,70:0.13,0.85:82
chr14	75513828	rs175080	G	A	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.31;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr14	75513883	rs175081	T	C	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	75535927	rs175499	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	75551254	rs175487	C	T	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	75551442	rs175486	A	C	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	75553655	rs175485	T	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	75572559	rs119077	T	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	75580152	rs175464	G	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	75587351	rs175454	T	C	1835.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.795;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.00;ReadPosRankSum=-0.620;SOR=1.793;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chr14	75590846	rs175449	A	T	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	75601782	rs175444	G	C	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	75735859	rs4903300	G	A	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	75745551	rs2239615	T	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	75745626	rs7101	C	T	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	75746690	rs1046117	C	T	9212.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr14	75747407	rs3216792	AG	A	4560.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	75758885	rs3742769	A	G	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr14	75759172	rs11159133	T	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	75760855	rs3742767	G	C	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	75989286	rs175722	G	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	76201482	rs2288141	G	T	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	76203747	rs967889	A	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	76224153	rs2113577	T	A	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	76232398	rs2359870	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	76238254	rs57636956	AT	A	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.733;QD=11.02;ReadPosRankSum=0.127;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr14	76242089	rs1035614	A	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	76287061	rs12206	T	C	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	76352929	rs1882827	C	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	76370530	rs10137007	T	C	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	76432136	rs3917187	T	C	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	76488551	rs2058941	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	76542940	.	C	T	2001.77	.	AC=1;AF=0.500;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	0/1:102,92:0.47:194
chr14	76619167	rs3813547	A	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr14	76638466	rs3783997	A	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	76644623	rs2121069	G	A	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	76662446	rs1900127	C	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	76777321	.	T	TTCTC	139	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=34.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	76957745	rs2361292	G	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	76957887	rs2361293	T	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	77229539	rs2270324	G	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	77236147	rs7142166	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	77236380	rs3815550	C	T	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	77244496	rs72737518	A	C	836.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=8.751;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.89;ReadPosRankSum=0.928;SOR=3.825;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr14	77245286	rs2242621	C	T	8571.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr14	77245644	rs17104866	G	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	77269788	rs2075773	A	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	77276622	rs57335731	A	C	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	77279064	rs8008004	A	G	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	77293072	rs72737548	C	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	77294876	rs17104907	T	C	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	77305508	rs11628619	T	C	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	77305833	rs12893724	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	77311296	rs12896621	A	G	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	77311445	rs11620630	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	77319773	rs61011979	G	GGTGTGT	692.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.535;QD=32.99;ReadPosRankSum=1.791;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr14	77327254	rs45536531	T	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	77332367	rs1882844	C	T	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	77333852	rs2293805	A	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	77336428	rs11625243	G	A	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	77492891	rs879027	G	A	13139.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr14	77493788	rs28692724	C	T	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr14	77493791	rs377151545	CTGT	C	2125.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr14	77493875	rs71428775	T	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr14	77600344	rs7141511	G	T	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	77686303	rs2287377	A	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	77697810	.	T	TA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.294;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr14	77697967	rs375566	A	G	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	77699933	rs17750404	C	T	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	77703057	rs403291	A	G	3141.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=-1.188;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:4,128:0.97:132
chr14	77704974	rs8010477	G	C	7597.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	77705726	rs4899646	C	T	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	77709120	rs2287380	A	G	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	77709450	rs409109	T	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	77737088	rs4903565	G	A	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	77745193	rs3209079	A	C	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	77746812	rs4540995	T	C	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	77750057	rs2216089	T	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	77751925	rs2270419	C	T	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	77755221	rs2287387	T	G	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	77772599	rs3815627	G	A	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	77787695	rs8177537	G	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	77793207	rs7975	G	A	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	77793237	rs7972	G	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	77794283	rs1046428	T	C	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	77795311	rs5809824	CT	C	1875.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	77795638	rs2270423	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	77796641	rs731346	G	A	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	77880493	rs8005759	C	T	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	77880524	rs10592368	CTT	C	531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.183;QD=22.16;ReadPosRankSum=-0.075;SOR=0.204;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr14	77880593	rs11159258	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	77914752	rs2091916	A	G	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	77919587	rs2364158	T	C	6549.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr14	77926011	rs1061629	C	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	77928476	rs12436593	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	77928525	rs1061638	A	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	77928735	rs11159262	A	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	77930752	rs11624314	G	A	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	77932017	rs7146595	A	C	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	77932111	rs7146784	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	77934392	.	C	CTT	59.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.90;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr14	77934394	rs28378084	C	T	68.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=17.13;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr14	77934758	rs4903584	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	77934905	rs11419661	A	AT	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.654;QD=10.30;ReadPosRankSum=-0.137;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr14	77935239	rs5809831	T	TG	969.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	77935520	rs7250	G	A	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	77951124	rs3742728	C	T	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	77984573	rs926114	C	T	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	77987958	rs2072672	C	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	78018246	rs11159275	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	78018614	rs2178876	C	T	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	78023519	rs2272587	C	G	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	78028803	rs2364602	A	G	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	78036899	rs11344772	AG	A	4917.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	78036935	rs4903606	A	G	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	78063823	rs34670650	AT	A	647.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	78170896	rs8021036	C	G	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	78174473	rs11159286	A	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	78176851	rs1076496	A	G	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr14	78183706	rs176959	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	78184566	rs176960	C	A	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	78185056	.	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.05;ReadPosRankSum=1.563;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	78187316	rs176965	A	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	78197365	rs114763	C	T	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	78199019	rs12587825	T	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	78200392	rs10134425	G	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	78201079	rs5809849	CA	C	90.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	78226850	rs1477264	G	A	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	78285461	rs3214433	GT	G	2109.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	78325698	rs7149884	C	T	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	78353259	.	AC	A	2539.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.52;QD=40.96;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	78353261	.	ACACACACACAC	A	2469.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=39.83;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr14	78353368	rs17826188	T	C	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	78365612	rs2287650	C	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	78366933	rs3837641	G	GAAC	15238.73	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:1,337:1.00:338
chr14	78366967	rs734654	A	G	12297.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:2,461:1.00:463
chr14	78390880	rs2302944	T	C	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	78744823	rs10134857	G	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	78748366	rs10147289	C	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	78766814	rs4903742	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	79176133	rs12147248	G	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	79181046	rs1465481	A	T	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	79276733	rs4133797	C	A	318.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.462;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr14	79276735	rs8013394	A	C	611.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.251;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.66;ReadPosRankSum=0.695;SOR=0.591;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr14	79454519	rs154325	G	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	80271565	rs45445000	T	G	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr14	80290425	rs932265	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	80993330	rs34838656	G	GA	482.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.23;MQRankSum=0.959;QD=16.65;ReadPosRankSum=0.353;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,26:0.90:29
chr14	80993773	.	TAA	T	70.27	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.71;ReadPosRankSum=-0.842;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:2,4:0.67:6
chr14	80993776	.	A	T	79.31	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=13.22;ReadPosRankSum=-0.524;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:2,4:0.67:6
chr14	81025522	rs1530771	C	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	81046810	rs71456210	A	AACGAGTT	1274.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	81228062	.	C	A	96.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr14	81251255	rs327463	T	C	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr14	81360893	rs34375242	C	CA	60.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.08;ReadPosRankSum=-1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr14	81360958	rs2288347	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	81371088	rs8016507	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	81422257	rs2239610	G	C	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	81574687	rs3837640	T	TTCTC	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	81574845	.	T	TTTTTTTCTTTTTAC	3062.73	.	AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.52;QD=51.91;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	81574959	rs3783942	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr14	81575005	rs3783941	C	A	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	81610583	rs1991517	G	C	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	81667852	rs8019633	A	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	81676360	rs201118427	C	CT,CTA	1958.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=75;set=Intersection	GT:AF:DP	1/1:1.00:44
chr14	81676361	.	AG	CT	785	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=5;NR=10;PP=785;QD=55.8978583241;SC=CATTTTCGGCAGGACAATTCT;SbPval=0.6;Source=Platypus;TC=15;TCF=5;TCR=10;TR=15;WE=81676410;WS=81676350;set=Platypus	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	81676361	.	A	AC	2004.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	81676362	rs199721074	G	T	2013.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	81676370	rs368782223	CTTTATCATACAGAATGGTCCCACAAGAAATA	CGAATGGTCCCACAAGAAATA,C	1997.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=66;set=Intersection	GT:AF:DP	1/1:1.00:45
chr14	81676382	rs372189020	GAATGGTCCCACAAGAAATAT	G	1989.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=3.865;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	81676402	.	T	G	350	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=5;NR=10;PP=350;QD=25.6514141698;SC=ACAAGAAATATGCAGGAATTG;SbPval=0.23;Source=Platypus;TC=23;TCF=5;TCR=18;TR=15;WE=81676410;WS=81676350;set=Platypus	GT:AD:AF:DP	1/1:8,15:0.65:23
chr14	81686938	rs145594822	A	AT	1865.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	81728288	.	TA	T	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.355;QD=1.68;ReadPosRankSum=-0.581;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr14	81737076	rs2241621	A	C	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	81744736	rs3813535	A	G	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	86088056	rs10141266	T	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	87386516	.	A	G	598.77	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	88400353	rs412915	C	T	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	88400449	rs413750	TG	CA	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	88401213	rs421262	T	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	88406404	rs417276	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	88407716	.	TA	T	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=1.273;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr14	88407734	rs448805	G	C	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.19;SOR=1.227;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	88407875	rs421466	T	A	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	88407888	rs398607	A	G	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	88411803	rs444902	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	88411837	rs366615	G	A	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	88411947	rs367327	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	88414211	rs398076	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	88414283	rs398343	G	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	88416390	rs440426	A	G	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	88416441	rs451073	C	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	88417095	rs11300320	GA	G	521.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr14	88417161	rs431748	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	88417244	rs443019	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	88651826	.	AAC	A	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.757;QD=0.77;ReadPosRankSum=-0.305;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:188,26:0.12:214
chr14	88652389	rs3742692	C	T	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	88706920	rs41286550	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	88707211	rs369769888	AT	A	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.53;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	88792816	rs3742690	T	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	88852031	rs709886	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	88852279	rs5810413	TG	T	900.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	88862529	rs3179969	G	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	88894210	rs2295135	T	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	88895669	rs386579	T	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.85;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	88895941	rs61975260	C	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	88934651	rs366476	G	A	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	88935925	rs2297129	A	G	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	88936254	rs2297128	A	G	9091.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr14	88938652	rs2274736	A	G	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	88945591	rs879932	A	G	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	88946622	rs2401751	G	A	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	88967280	rs45446997	T	C	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	88970925	rs1998670	C	T	7788.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr14	88971758	rs2274735	T	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	88974131	rs34965888	GAT	G	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	88974417	rs10143744	T	C	183.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	88983670	rs10150986	G	A	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	89037482	rs10682918	C	CAT	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	89042180	rs1469602	T	G	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	89063167	rs2297124	A	G	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr14	89082396	rs61173654	A	AT	1779.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	89087278	rs201884924	TA	T	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=2.14;ReadPosRankSum=2.133;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:49,28:0.36:77
chr14	89088266	rs4635267	C	T	7145.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr14	89088357	rs56144430	G	A	9292.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr14	89088388	rs2983488	G	C	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr14	89089149	rs11382327	C	CT	565.19	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:5,35:0.88:40
chr14	89094243	rs1144916	G	C	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	89105287	rs1152383	T	A	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	89148486	rs17260380	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	89151392	rs17204164	C	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	89205265	rs17188228	T	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	89258877	rs61982739	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	89297204	rs113982416	G	A	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	89307320	rs17700296	T	C	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	89591829	rs17777553	G	T	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	89647259	rs140257053	G	GGCAGAGAACATGCATGGA	1686.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	89647297	rs34338248	T	TAC	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr14	89747473	rs7147341	T	C	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	89867978	rs12147030	T	C	9957.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr14	90097939	rs139214677	GC	G	1702.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	90097941	rs201292636	T	A	1711.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	90390948	rs12100727	A	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	90390968	rs12101251	T	A	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	90391072	rs11159940	T	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	90397718	rs57465932	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	90398834	rs3833988	A	AT	602.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	90398907	rs8778	G	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	90399058	rs3752966	T	C	210.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	90451303	rs1296406	A	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	90456188	rs2401863	G	T	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	90529028	rs41286552	G	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	90723109	rs6575119	T	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	90731687	.	GAA	G	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.389;QD=1.02;ReadPosRankSum=-0.781;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr14	90734826	rs11624246	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	90740324	rs34512486	ATCT	A	12515.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr14	90740588	rs10140761	G	C	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	90744672	rs10184	G	A	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	90745422	rs3737035	T	C	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	90767607	rs3825661	C	T	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	90767746	rs3742669	C	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	90767759	rs3742668	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	90767856	rs3742667	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	90769539	rs2149647	C	T	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	90770210	rs4904670	C	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	90863489	rs12886342	G	A	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	90865283	rs2300497	T	C	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	90865462	rs2300498	C	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	90865548	rs2300499	C	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	90866346	rs2268433	C	T	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	91007944	rs145392805	CAG	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-1.258;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:177,21:0.11:198
chr14	91077278	rs3215800	AC	A	2148.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	91084338	rs754247	C	T	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	91110582	rs3830889	TACATAC	T	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	91113471	rs2277512	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	91113537	rs1286422	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	91282452	rs2401918	T	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	91282470	rs943700	G	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.88;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	91360733	rs77438853	G	GT	5804.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	91365646	rs61587732	GAA	G	3011.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.48;ReadPosRankSum=1.009;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:18,116:0.87:134
chr14	91365649	rs117599685	A	G	1181.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-0.718;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:60,83:0.58:143
chr14	91365650	.	A	G	96.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.537;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:118,28:0.19:146
chr14	91372685	rs60178849	CA	C	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.987;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr14	91389772	.	TCATC	T	21	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.4995;HP=1;HapScore=2;MGOF=3;MMLQ=21;MQ=51.96;NF=0;NR=1;PP=21;QD=26.0;SC=AATGGTACCATCATCCATCCA;SbPval=1.0;Source=Platypus;TC=10;TCF=1;TCR=9;TR=1;WE=91389783;WS=91389762;set=Platypus	GT:AD:AF:DP	0/1:9,1:0.10:10
chr14	91409615	rs111743702	A	AT	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.206;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr14	91467567	rs1286147	A	C	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	91592748	rs57615276	C	CTTCTT	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	91642234	rs2295528	A	G	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	91690000	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.223;QD=0.29;ReadPosRankSum=-1.992;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:91,17:0.16:108
chr14	91710562	rs71656519	GAC	G	370.75	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr14	91739081	rs941920	A	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	91751788	rs11341843	TC	T	7192.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	92185731	rs17783516	G	A	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	92189366	rs17127513	T	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	92191350	rs3814837	C	T	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	92264080	rs71120197	TA	T	696.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.948;QD=10.25;ReadPosRankSum=-0.111;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:18,50:0.74:68
chr14	92268615	rs2402073	T	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	92280037	rs10134181	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	92336775	rs929608	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	92343764	rs2430341	C	T	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	92353791	rs78277125	G	A	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	92420861	rs2430336	C	T	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=60.57;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	92441066	rs1051340	C	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	92454604	rs2273182	A	G	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	92460098	rs2273185	C	A	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	92461963	rs34736578	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.37;ReadPosRankSum=-0.816;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr14	92473943	rs3818095	T	C	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	92477168	rs2277526	A	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	92484227	rs11849778	T	C	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	92491853	rs2295171	T	C	698.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	92537105	rs7158238	C	T	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.80;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	92537163	rs3092822	T	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	92537223	rs7158733	G	T	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	92537353	.	C	CG,CGCTGCTGCTGCTGCT,CGCTGCTGCTGCTGCTGCT	6501.73	.	AC=2,0,0;AF=1.00,0.00,0.00;ALERT;AN=2;DP=152;set=Intersection	GT:AF:DP	1/1:1.00:151
chr14	92537354	.	C	G	1689	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=4;HapScore=1;MGOF=7;MMLQ=24;MQ=62.7;NF=30;NR=43;PP=1689;QD=23.6133042815;SC=GATAGGTCCCCCTGCTGCTGC;SbPval=0.66;Source=Platypus;TC=93;TCF=41;TCR=52;TR=73;WE=92537362;WS=92537342;set=Platypus	GT:AD:AF:DP	1/1:20,73:0.78:93
chr14	92537354	.	C	CTGCTGCTGCTGCTG,CTGCTGCTGCTGCTGCTG	6213.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.71;QD=65.41;SOR=0.757;set=HC	GT:AD:AF:DP	1/2:0,12,83:0.13,0.87:95
chr14	92546144	rs2003721	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	92547145	rs761551	G	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	92547176	rs761552	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	92547425	rs761553	C	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	92548785	rs1048755	C	T	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	92548896	rs10146519	A	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	92549586	rs16999141	G	A	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.237;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	92549632	rs12590497	C	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	92555199	rs8003041	T	C	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	92559411	rs11340209	AT	A	213.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=19.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	92559678	rs4904834	G	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	92559768	rs1997917	T	C	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	92560008	rs1997920	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	92560288	rs10606586	GTTT	G	621.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.548;QD=32.72;ReadPosRankSum=1.537;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr14	92560311	rs2402108	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	92562277	rs17847278	C	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	92562288	.	G	GA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.549;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr14	92562568	rs12147767	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	92563254	rs35079962	A	AT	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=9.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-1.327;SOR=0.041;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr14	92588155	rs34343740	AT	A	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.844;QD=1.22;ReadPosRankSum=0.293;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr14	92792255	rs941646	G	A	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	92792432	rs941645	T	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	92905817	rs4900122	A	G	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	92909073	rs941650	T	C	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	92915625	rs72053272	TAC	T	374.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.555;QD=22.04;ReadPosRankSum=-1.493;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr14	92920371	rs7144273	C	T	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	92922667	rs56007403	C	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	92922681	rs7156906	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	92922713	rs7158400	T	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	92959216	rs11623883	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	92960025	rs4904942	T	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	92981606	rs55930890	C	G	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	93118669	rs3742716	G	A	10497.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr14	93170741	rs2250672	T	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	93170901	rs2402189	A	C	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	93170993	rs9791	C	T	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	93178191	rs1951708	A	G	12867.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr14	93182466	rs1242119	G	A	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	93273195	.	A	C	6471.77	.	AC=2;AF=1.00;AN=2;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	93303843	.	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.818;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr14	93397758	rs145227561	AGAG	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.546;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:82,10:0.11:92
chr14	93407301	rs13316	C	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	93581340	.	GCACCGGGCTCGGGCCGGGGGT	G	3784.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=10.068;MLEAC=2;MLEAF=1.000;MQ=61.05;MQRankSum=0.712;QD=25.40;ReadPosRankSum=0.192;SOR=1.624;set=HC	GT:AD:AF:DP	1/1:4,145:0.97:149
chr14	93649501	rs1046099	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	93686568	.	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.930;QD=5.49;ReadPosRankSum=-0.822;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr14	93693422	rs2905	C	T	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	93712644	rs55659625	TA	T	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-0.228;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:41,41:0.50:82
chr14	93933974	rs34277584	C	CTTTTTTTT	90.25	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=45.12;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	93953904	rs61992611	G	A	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.44;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	93953907	rs33942732	A	AT	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-1.185;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr14	93962691	rs8006093	G	A	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	93994870	rs17094893	A	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	93994954	rs28420706	G	A	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	93998806	rs942068	C	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	94007075	rs1951716	C	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	94008717	.	T	A	119.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr14	94008753	rs12893237	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	94088587	rs4905081	G	A	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	94097287	rs2148563	G	A	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	94103602	rs4905082	G	A	6141.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	94109829	rs943318	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	94125746	rs143089220	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	94129223	.	AAC	A	57	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=57;QD=20.0;SC=AAACACTTTAAACACACACAC;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=3;WE=94129232;WS=94129213;set=Platypus	GT:AD:AF:DP	1/0:16,3:0.16:19
chr14	94152768	rs2296686	C	G	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	94160521	rs943323	C	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	94160611	rs960888	G	A	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	94187832	rs1887197	C	T	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	94245452	rs34914817	A	G	227.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	94245649	rs4905087	A	G	10162.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	94245652	rs4900195	C	T	10205.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr14	94394715	rs11554726	C	T	8491.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr14	94400431	rs11625548	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	94405871	rs10873442	G	C	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	94406096	rs7155320	A	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	94410447	rs10134105	T	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	94417421	rs7147919	G	A	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr14	94417541	rs4277287	A	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	94417586	rs4483793	G	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	94419888	rs4243701	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	94503578	rs10138711	G	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	94510964	rs2273226	T	C	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	94512415	rs8021300	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	94517533	rs112814907	C	CCACGG	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	94519199	rs3790045	C	T	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	94524216	rs1056810	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	94527525	rs11846519	C	T	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	94563193	rs7157940	T	C	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	94563265	rs79237142	C	T	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	94564035	rs2896258	A	G	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.66;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	94564039	rs2402407	A	G	1262.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.38;ReadPosRankSum=1.227;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:2,52:0.96:54
chr14	94564058	rs2402408	G	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	94567032	rs3818119	CC	TT	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	94582130	rs3833507	T	TGGCCATGGC	5279.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	94583098	rs150792259	T	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	94594768	rs958187	T	G	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	94595794	rs45539232	G	A	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.05;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	94696808	rs3833506	CAT	C	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	94697192	rs35773091	G	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	94700138	rs4905172	C	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	94708494	rs12431501	C	T	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	94716388	rs4905173	G	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	94722748	rs6575402	T	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	94722764	rs6575403	C	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	94724949	rs2180399	T	C	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	94731910	rs1107110	A	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	94732107	rs3827899	T	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	94733474	rs1950644	A	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	94745083	rs5810667	G	GT,GTT	1432.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.041;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.352;QD=18.37;ReadPosRankSum=0.318;SOR=0.242;set=HC	GT:AD:AF:DP	1/2:8,32,38:0.41,0.49:78
chr14	94750292	rs1950641	G	A	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.104;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	94750486	rs2232710	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	94756119	rs2232704	C	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	94756450	rs2232700	T	A	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	94756750	rs941591	T	C	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	94756794	rs941590	T	C	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	94772429	rs2228543	G	A	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	94847415	rs6647	A	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	94909630	rs3818257	C	T	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	94914455	rs10129672	A	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	94929367	rs2295652	G	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	94929541	rs2224418	G	A	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	94929660	rs11624364	G	A	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	94930984	rs13379439	G	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	94931016	rs8020984	T	G	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	94931105	rs11628722	A	G	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	94933473	rs28618118	C	A	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	94933640	rs28583900	A	T	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	94933695	rs17090921	G	A	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	95028020	rs910352	C	T	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	95053890	rs6115	G	A	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr14	95054176	rs6112	T	C	11221.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.91;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr14	95057270	rs6107	G	A	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	95057401	.	T	C	225	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=2;MGOF=52;MMLQ=27;MQ=61.07;NF=1;NR=8;PP=225;QD=28.8634680608;SC=CCAGTTCACTTTATTCAATTC;SbPval=0.65;Source=Platypus;TC=9;TCF=1;TCR=8;TR=9;WE=95057409;WS=95057391;set=Platypus	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	95058360	rs6109	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	95058462	rs6116	A	C	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	95058631	rs6108	A	T	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	95081744	rs2896288	G	A	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	95085465	rs8004988	C	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	95088626	rs9323910	G	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	95088847	rs11625058	G	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	95109739	rs17091191	G	A	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr14	95236204	.	G	GCGC	2836.73	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	95566101	rs71899983	AC	A	122.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.662;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr14	95566103	rs35300142	AC	A	1029.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.18;ReadPosRankSum=1.153;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:4,28:0.88:32
chr14	95566105	rs367764979	ACAC	A	603.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=0.435;SOR=1.295;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr14	95682152	.	CTG	C	462.73	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.85;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	95875342	rs3742345	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	95884323	rs12434757	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	95898487	rs1187747	G	A	2079.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.456;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.37;ReadPosRankSum=-0.722;SOR=0.585;set=HC	GT:AD:AF:DP	1/1:1,88:0.99:89
chr14	95923421	rs3036484	CA	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.911;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr14	95923756	.	GGT	G	219	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=60.0;NF=0;NR=10;PP=219;QD=22.3;SC=AGCCTGCCTGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=45;TCF=3;TCR=42;TR=10;WE=95923765;WS=95923746;set=Platypus	GT:AD:AF:DP	0/1:35,10:0.22:45
chr14	95932223	rs12434921	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	95932628	rs4900270	T	C	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	95999676	rs373834979	TA	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.899;QD=0.44;ReadPosRankSum=-1.301;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr14	96009307	rs716315	C	T	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	96103099	rs4905366	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	96103269	rs11160283	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	96131432	rs1743491	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	96136775	rs2296310	C	A	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	96136794	rs2249778	A	G	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr14	96137935	rs911678	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	96152728	rs11160284	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	96157694	rs79081800	T	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.33;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	96157698	rs1748958	A	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	96178173	rs2296311	G	A	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	96180242	rs1122138	C	A	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr14	96556914	rs2093722	T	C	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	96557121	rs10148419	T	C	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr14	96671222	rs5223	G	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	96703484	rs1046248	C	T	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	96707457	rs5224	A	G	8318.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr14	96728943	.	CTT	C	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=1.020;QD=15.89;ReadPosRankSum=1.335;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr14	96730142	rs2071084	A	G	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	96770720	rs8007718	T	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	96770952	rs34674555	CAA	C,CA	1186.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.550;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=-1.051;SOR=1.109;set=HC	GT:AD:AF:DP	1/2:3,48,13:0.75,0.20:64
chr14	96771959	rs2289622	A	G	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	96772330	rs2289623	A	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	96772942	rs72704880	C	T	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	96776008	rs2289628	A	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	96778095	rs7359066	T	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	96779865	rs7155874	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	96781912	rs9323945	T	C	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	96797724	rs1822372	G	A	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	96813703	rs4905483	A	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	96829290	rs12434329	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	96848899	rs4905486	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	96864309	rs8019939	A	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	96871104	rs2275554	G	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	96871337	rs8009774	CC	TT	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	96916232	rs11424079	G	GT	240.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr14	96922752	rs2369679	C	G	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	96998621	rs10677291	T	TTG	728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.521;MLEAC=1;MLEAF=0.500;MQ=61.23;MQRankSum=1.039;QD=24.29;ReadPosRankSum=1.629;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr14	97022168	.	A	AT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=-1.208;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:100,19:0.16:119
chr14	97312642	rs1951311	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	97342500	rs45457797	C	G	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr14	98435696	rs2124843	T	C	6043.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	98444369	rs8016584	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	99392468	rs200318	C	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	99641543	.	GCTC	G	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=6.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.434;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:102,14:0.12:116
chr14	99737635	.	G	GCGCCGCTGC	2221.73	.	AC=1;AF=0.500;AN=2;DP=198;set=Intersection	GT:AD:AF:DP	0/1:11,101:0.90:112
chr14	99737699	.	G	GT	2263	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=9;HapScore=1;MGOF=131;MMLQ=22;MQ=60.0;NF=3;NR=46;PP=2263;QD=46.5306122449;SC=CCGGGTTGGTGTTTTTTTTCC;SbPval=0.45;Source=Platypus;TC=79;TCF=4;TCR=75;TR=49;WE=99737707;WS=99737689;set=Platypus	GT:AD:AF:DP	0/1:30,49:0.62:79
chr14	99871812	rs1262304	T	G	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	99876505	rs1047351	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	99924979	rs67963270	TAA	T	1815.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	99929801	rs2273386	G	A	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	99988724	rs2400681	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	100002473	rs12882209	A	G	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	100046271	rs34139518	T	TC	15424.73	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr14	100069742	rs8007401	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	100119238	rs3825570	G	T	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	100125731	rs11621678	C	T	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	100126173	rs56204154	C	T	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.75;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	100126181	.	GCA	G	186.77	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	100138831	rs80321378	G	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	100150975	rs61984440	T	C	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	100161941	.	T	TTTA	336.74	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	100174092	.	AT	A	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.515;QD=2.08;ReadPosRankSum=-0.466;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr14	100189287	rs10151332	C	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	100344698	rs1191118	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	100352375	rs746698	C	T	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	100363336	rs17652784	T	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	100363671	rs2273707	GA	CG	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	100375707	rs34198557	C	T	8898.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr14	100376502	rs10140426	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	100380540	.	C	T	3795.77	.	AC=2;AF=1.00;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	100380948	rs2250718	T	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	100383963	rs3818279	C	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	100384232	rs2273704	A	C	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.193;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	100387242	rs34263849	A	AT	7869.73	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr14	100402326	rs3215696	ATTG	A	3829.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	100404067	rs2295788	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	100404351	rs2295787	T	C	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	100405757	rs2236282	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	100592959	rs726514	G	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	100594926	.	GC	G	1189.73	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	100599164	rs941897	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	100607360	rs1951486	T	C	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	100608274	rs4905933	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	100615665	rs4905936	T	C	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	100625902	rs7157599	C	T	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	100740904	rs4905942	G	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	100758502	rs11557208	G	A	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	100772672	rs11557209	G	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	100792220	rs7155877	C	T	16501.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr14	100792482	rs1951519	C	A	9133.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:1,339:1.00:340
chr14	100795139	rs35007880	G	T	10349.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr14	100801423	rs2234532	T	C	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	100803364	rs2234530	A	G	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	100803655	rs2234528	C	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	100808493	rs5810992	G	GA	3298.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr14	100808510	rs1373	T	A	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	100808845	rs9453	G	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	100813077	rs941923	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	100820980	rs1009812	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	100826773	rs2234524	C	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	100831835	rs1998902	C	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	100832282	rs2146105	C	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	100832391	rs724391	T	C	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	100847523	rs2181170	T	C	5356.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr14	100847707	rs2273800	A	G	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	100847930	rs3742387	A	G	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	101007072	rs6575788	C	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	101138230	rs8011237	A	C	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	101194944	rs10151914	T	G	82.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	101198417	rs6575799	A	G	5860.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	101301012	rs10132552	T	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	101301261	rs11160606	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	101302800	rs12889884	C	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	101403072	rs1956732	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	101403075	rs1956731	C	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	101406011	rs1951026	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	101411953	rs12433065	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	101412173	rs11847325	G	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	101418192	rs10713875	TG	T	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	101420572	rs8015089	G	A	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	101429568	rs16791	G	A	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	101429659	rs17172	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	101431194	rs4547276	A	G	3994.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	101432440	rs111435301	C	CAGA	12394.73	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	101433469	rs67466596	A	T	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	101433552	rs2145502	C	T	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	101435371	rs12432302	A	G	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	101436159	rs34955121	GT	G	2528.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	101439870	rs1956727	G	T	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	101439916	rs1956726	T	G	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	101440072	rs150296823	CTTG	C	8725.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	101442218	rs12893444	A	G	6580.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr14	101442692	rs28586880	T	G	186.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	101447517	rs10131435	A	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	101452574	rs4906029	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	101453344	rs3742401	G	T	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	101454578	rs74797707	A	G	8893.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	101454594	rs78341223	A	G	7823.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr14	101495787	rs4906031	G	A	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	102018917	rs75480446	T	A	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	102018946	rs17100344	A	G	7648.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	102018963	rs60082567	G	C	8268.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	102019157	rs12147061	A	C	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	102276205	.	CT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=1.583;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr14	102302490	.	G	GT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.000;QD=0.94;ReadPosRankSum=-0.179;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr14	102442247	.	C	CT	100.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	102496394	rs3830916	AGT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=5.387;QD=0.48;ReadPosRankSum=-2.370;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr14	102507065	rs17541540	G	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	102548224	rs2298877	T	C	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	102548384	rs6575895	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	102549262	rs10782495	A	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	102550069	.	T	TA	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.051;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr14	102550569	rs3742429	G	A	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	102550803	rs4947	G	A	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	102551795	rs35308930	T	TTAA	5210.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	102552773	rs8004640	A	G	26684.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,599:1.00:599
chr14	102552773	.	AAT	GAG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=59.96;NF=233;NR=316;PP=2947;QD=20;SC=GGCAACACGAAATTCCATCGC;SbPval=0.5;Source=Platypus;TC=562;TCF=236;TCR=326;TR=549;WE=102552783;WS=102552763;set=Platypus	GT:AD:AF:DP	1/1:13,549:0.98:562
chr14	102552775	rs3736807	T	G	26684.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=1.084;set=HC	GT:AD:AF:DP	1/1:0,588:1.00:588
chr14	102568296	rs10873531	G	A	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	102568367	rs8005905	T	A	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	102894559	.	G	GT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=0.434;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr14	102894593	rs1309353	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	103177420	rs3783383	G	C	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	103192667	.	CA	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=1.030;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr14	103338324	rs2295402	T	A	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr14	103341865	rs10668366	G	GT	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=-0.046;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr14	103342049	rs1131877	T	C	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	103370163	rs9671376	C	T	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	103388999	rs2295828	T	C	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	103389003	rs2295829	G	C	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	103397055	rs1190233	G	C	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	103412101	rs10138676	C	T	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	103412268	rs2403107	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	103413941	rs8007924	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	103434530	rs2093414	T	A	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.59;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	103440282	rs1018550	G	T	10196.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr14	103440473	rs8009219	G	C	9262.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr14	103449863	rs36061149	C	CA,CAA	2995.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.731;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.81;MQRankSum=1.738;QD=12.86;ReadPosRankSum=0.312;SOR=0.844;set=HC	GT:AD:AF:DP	1/2:50,121,62:0.52,0.27:233
chr14	103453067	rs35202201	T	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	103523598	rs34302315	T	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	103570134	.	C	CGTGTGT,CGTGTGTGT	1378.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=46;set=Intersection	GT:AF:DP	1/2:0.50,0.44:36
chr14	103570166	.	T	TGTGTGTGG	633	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=21;MQ=58.58;NF=7;NR=13;PP=633;QD=31.8;SC=TGTGTGTGTGTACAGATGCCC;SbPval=0.85;Source=Platypus;TC=52;TCF=24;TCR=28;TR=20;WE=103570174;WS=103570156;set=Platypus	GT:AD:AF:DP	0/1:32,20:0.38:52
chr14	103574714	rs10144543	C	T	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	103576415	rs729184	A	G	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	103589193	rs116958646	T	G	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	103593950	rs1132339	C	G	8348.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr14	103595997	rs2234130	G	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	103596488	rs2234131	G	A	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	103596609	rs2234133	T	A	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr14	103597565	rs749206	G	A	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	103599938	rs2234143	C	T	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	103602278	rs710100	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	103802918	.	C	CA	899.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.075;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-0.207;SOR=1.435;set=HC	GT:AD:AF:DP	1/1:10,54:0.84:64
chr14	103802950	rs148149408	TGTGA	T	5354.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	103803575	rs77923596	C	G	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	103918182	rs2273702	G	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	103923414	rs2273700	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	103923475	rs2273699	A	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	103928657	rs4906326	T	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	103932888	rs1951393	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	103933341	rs11320440	CA	C	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-0.500;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr14	103933348	rs201971883	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.347;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr14	103934488	rs10137161	T	C	5562.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr14	103934653	.	T	TC	300	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.81;MQRankSum=2.188;QD=18.75;ReadPosRankSum=1.145;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr14	103946636	rs8014010	A	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	103964807	rs202211193	A	AT	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=0.395;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,37:0.76:49
chr14	103987305	rs8017780	C	A	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	103995489	rs2765038	C	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.15;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	103996396	rs2765037	G	A	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	103996733	rs2756138	C	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	104027557	rs11625397	C	T	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	104029246	rs2274269	G	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	104029378	rs2274268	C	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	104029792	rs2296483	G	A	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	104129352	rs7150141	G	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	104136469	rs11333716	CT	C	3756.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	104139570	rs11160757	G	T	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	104143928	rs4906357	A	C	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	104145625	.	GT	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.755;QD=1.15;ReadPosRankSum=0.887;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr14	104165753	rs861539	G	A	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	104167075	rs861537	C	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	104167545	rs709399	G	A	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	104167564	rs861536	A	G	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	104172807	rs861531	C	A	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	104177190	.	AACAC	A,AAC	1931.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.93;QD=29.27;SOR=3.442;set=HC	GT:AD:AF:DP	1/2:0,14,52:0.21,0.79:66
chr14	104193099	rs2295151	C	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	104193284	rs145869085	C	CGTTTTTTTTTTT	92	.	AC=1;AF=0.500;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.16;QD=6.57;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr14	104194196	rs1535100	C	G	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	104194278	rs1535099	C	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	104195610	rs2295148	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	104199356	rs2295146	C	T	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr14	104199590	rs112502838	TG	T	479.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	104202304	rs2295145	G	A	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	104203938	rs8004408	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	104206103	rs45444495	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	104212949	rs2295141	T	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	104216293	rs2295140	C	T	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	104219578	rs35740460	C	CT	300.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=0.191;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr14	104245034	rs74372983	C	T	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	104251006	rs4900594	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	104251276	rs3742369	T	C	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	104394835	rs9324065	T	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	104429302	rs140667603	A	AGT	316.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr14	104429453	rs6576013	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	104465037	rs10133836	T	C	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	104465177	rs2005081	T	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	104470698	rs200858855	GTTTA	G	640.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	104481016	rs7150795	G	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	104491086	rs71863477	TACAC	T	309.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.41;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	104498472	rs4906405	G	A	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	104500427	rs10150865	A	G	4893.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=-0.532;SOR=0.290;set=HC	GT:AD:AF:DP	1/1:1,188:0.99:189
chr14	104500528	.	TTC	T	54.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=12.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.99;ReadPosRankSum=0.381;SOR=4.400;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr14	104518453	rs7150461	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	104569801	rs8012482	C	G	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	104570904	rs1744299	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	104571054	rs8012505	C	G	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	104571820	rs2282377	C	G	4190.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=2.930;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	104571826	rs1744300	A	G	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.51;SOR=3.284;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	104573690	rs1744301	A	G	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	104575466	rs1771012	C	T	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	104640011	rs2275593	T	C	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	104641612	rs4906422	T	C	20545.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:0,753:1.00:753
chr14	104642341	rs2487304	A	G	11535.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr14	104642422	rs3742947	A	G	9285.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr14	104643409	rs2487303	A	G	6291.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	104645755	rs35751202	G	GC	493.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	104647224	rs884996	C	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	104710505	rs7142555	T	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	104940930	rs28453989	C	T	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	104940967	rs28699424	G	A	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	104941016	rs28715110	G	A	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	105055291	rs3840008	TG	T	964.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	105055304	rs11160811	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	105057948	rs3803317	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	105059573	rs28656783	C	T	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	105060024	rs12879330	A	G	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.41;SOR=2.102;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	105060029	rs12880651	T	C	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.66;SOR=2.245;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	105063253	rs11629201	C	T	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	105070791	rs3803313	G	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	105167807	rs4983530	C	T	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	105170163	rs7145815	G	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	105170175	rs7146817	T	G	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	105170222	rs7145851	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	105179043	rs4497619	G	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	105179194	rs10133301	T	C	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	105180484	rs9672043	C	T	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	105180565	rs4983535	T	C	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	105180706	rs1128840	A	G	9720.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr14	105185083	rs138798126	TAC	T	3382.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	105196235	rs34672588	G	A	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=26.18;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	105196365	rs33958252	T	C	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	105201596	rs7149183	T	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	105206172	rs71421880	T	A	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	105207040	rs12894569	C	T	12690.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr14	105207134	rs3803307	A	G	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	105208037	rs4983539	A	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	105211426	rs7155192	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	105213343	rs6644	A	G	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	105219467	rs3809453	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	105219976	rs12889167	T	C	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr14	105220210	rs7151424	G	A	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	105223194	rs34992074	C	CAT	3012.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	105223495	rs35550015	G	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	105223525	rs12590163	T	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	105223853	rs35165446	T	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	105225620	rs10142660	G	T	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	105241378	rs3730346	C	T	8705.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	105258892	rs2494748	CA	TG	26252.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr14	105267579	rs12878684	A	G	8365.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr14	105268228	rs4983387	G	A	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	105309252	rs12895703	T	C	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=1.824;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	105309256	rs12894371	A	T	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	105309608	rs12878750	C	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	105335049	rs12431850	C	T	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	105344111	rs78118267	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	105344157	rs75824199	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	105344188	rs370824172	TCCCC	T	1562.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	105344293	rs61995995	C	T	15684.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr14	105344318	rs2304758	G	A	16187.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr14	105344347	rs2304757	C	G	8718.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr14	105344419	rs34009344	A	G	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	105344603	rs41310934	C	T	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	105344761	rs41317300	C	T	8229.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr14	105344872	rs61995998	C	T	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	105349220	rs2028415	T	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	105349388	rs2028414	A	C	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr14	105349877	rs10145119	C	T	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=1.677;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	105349886	rs10145122	C	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	105349891	rs10145270	G	A	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.72;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	105349897	rs10145031	A	G	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.82;SOR=2.211;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	105350178	rs45449696	C	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	105350355	rs2841236	A	G	10975.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr14	105350799	rs9788593	C	T	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	105350868	rs9788594	C	T	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	105351637	rs2582549	A	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	105351673	rs894038	C	T	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	105352255	rs2251389	T	A	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	105354293	rs2582548	A	G	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	105356137	rs2919629	G	C	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	105356240	.	CAAATG	C	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-0.422;QD=22.16;ReadPosRankSum=-3.326;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr14	105356241	.	A	G	408	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=50;MMLQ=24;MQ=59.65;NF=0;NR=21;PP=408;QD=21.0843434546;SC=ATGGATGGACAAATGGATGGA;SbPval=1.0;Source=Platypus;TC=23;TCF=1;TCR=22;TR=21;WE=105356259;WS=105356230;set=Platypus	GT:AD:AF:DP	1/1:2,21:0.91:23
chr14	105356247	.	ATGGATGG	A	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.610;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.434;QD=23.12;ReadPosRankSum=-3.068;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr14	105359306	rs3742939	G	C	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	105359827	rs2247712	T	C	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	105360746	rs2841244	T	C	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	105363157	rs7152667	A	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.93;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	105363202	rs10147348	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	105393556	rs2841280	G	C	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	105414280	rs2819429	T	G	15351.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr14	105417731	rs199870471	GG	CA	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=50.69;QD=50.41;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	105417738	.	G	C	3861.77	.	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.79;QD=47.68;SOR=1.854;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	105417747	rs373120351	A	G	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.51;QD=37.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	105417774	rs2013228	G	A	5562.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.16;QD=28.67;SOR=1.313;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	105417894	rs2819440	C	G	13232.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr14	105452035	rs10150682	A	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	105457771	rs2247140	A	G	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	105461067	rs894039	C	T	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	105478102	rs3803294	G	A	12293.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr14	105523663	rs7147439	G	A	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	105622056	rs2816679	A	G	13293.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr14	105675946	rs118016083	G	A	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	105905126	rs4983620	C	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	105911639	rs6576102	G	A	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	105916420	rs4983409	C	T	11404.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr14	105924538	rs7492915	G	A	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	105924786	rs4074001	G	A	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	105929443	rs7143366	C	T	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	105930406	rs4983413	G	A	10111.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr14	105930923	rs11845995	G	A	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	105931585	rs4983339	A	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	105935721	rs10150545	A	G	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	105935824	rs13707	G	A	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	105936064	rs10150915	A	G	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	105936100	rs144496498	A	ACCTTGGCTGGTGGCC	5458.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	105945891	rs11849001	C	T	16514.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr14	105953474	rs7160858	G	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	105953595	rs7140395	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	105960319	rs61641418	A	G	279.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=0.966;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr14	105962234	rs7494350	T	C	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	105962369	rs7494717	A	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	105963944	rs4983426	CT	TC	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	106054428	rs9972103	C	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.59;QD=30.92;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	106054456	rs61984162	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	106066454	rs4983454	T	C	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	106067618	rs12884681	G	A	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	106110330	rs8014709	T	C	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	106173790	rs17349690	A	G	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:90,205:0.69:295
chr14	106173808	rs371291470	G	A	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.066;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=42.022;MLEAC=1;MLEAF=0.500;MQ=49.23;MQRankSum=-7.862;QD=3.62;ReadPosRankSum=-2.248;SOR=3.093;set=HC	GT:AD:AF:DP	0/1:190,54:0.22:244
chr14	106173971	rs10220590	T	C	853.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=29.251;MLEAC=1;MLEAF=0.500;MQ=43.71;MQRankSum=2.352;QD=23.72;ReadPosRankSum=0.710;SOR=3.517;set=HC	GT:AD:AF:DP	0/1:4,32:0.89:36
chr14	106188045	rs11624491	C	T	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	106188230	rs1134590	C	T	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.46;QD=26.95;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	106188309	rs11624581	C	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	106208082	rs11621259	G	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.83;QD=43.72;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	106208086	rs1045853	A	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.28;QD=42.12;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	106209340	rs11552998	T	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	106236128	rs12890621	T	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	106236451	rs12895160	T	G	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.17;QD=41.29;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	106236458	rs11628528	C	T	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.35;QD=43.11;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	106237105	rs2753552	A	G	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	106237642	rs2983777	T	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.27;QD=24.68;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	106237811	rs11621054	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	106303325	rs3764172	A	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	106303699	rs10139433	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	106303846	rs1005582	C	T	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	106303948	rs1005581	A	G	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	106304899	rs762807	G	T	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	106306841	rs709589	C	T	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	106307054	rs2753491	C	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	106307418	rs2753492	G	A	8027.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr14	106310962	rs3751509	C	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	106311374	rs2856940	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	106318342	rs2256593	T	C	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr14	106318440	rs2256589	T	C	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=1.321;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	106318450	rs2753504	G	A	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.321;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	106321590	rs12365	C	A	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	106321913	rs1136534	G	A	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	106322388	rs2753506	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	106329435	rs1950943	T	G	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	106329449	.	ATG	A	7232.73	.	AC=2;AF=1.00;AN=2;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	106329451	.	GTA	ACC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=19;MQ=60.0;NF=65;NR=56;PP=2937;QD=20;SC=AGACGTCCATGTAGTAGTAGT;SbPval=0.53;Source=Platypus;TC=140;TCF=75;TCR=65;TR=121;WE=106329464;WS=106329425;set=Platypus	GT:AD:AF:DP	1/1:19,121:0.86:140
chr14	106329453	.	A	ACC	7241.73	.	AC=2;AF=1.00;AN=2;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	106330320	rs2857385	A	C	12579.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr14	106330370	rs2857384	G	A	14682.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,561:1.00:561
chr14	106346740	rs2244932	A	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	106346795	rs2244930	G	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	106346990	rs2244917	G	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	106347371	rs112800624	T	A	10995.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr14	106347420	rs72481504	T	C	15257.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr14	106347467	rs2516984	A	C	16395.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr14	106349827	rs188955129	G	A	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr14	106354418	rs12894229	G	A	8068.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr14	106354450	rs113647906	A	G	10370.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:2,362:0.99:364
chr14	106354474	rs199550558	TACAGGAG	T	18993.73	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr14	106354495	rs200584328	A	AG	21428.73	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.76;QD=46.28;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr14	106354498	rs202197703	CT	C	21812.73	.	AC=2;AF=1.00;AN=2;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.00;QD=45.35;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr14	106354503	rs111599611	C	T	21755.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.04;QD=44.95;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,484:1.00:484
chr14	106354531	rs112554218	T	C	13452.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr14	106354666	rs188457056	C	T	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.30;QD=44.78;SOR=3.797;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	106354668	rs190753651	T	C	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.29;QD=45.92;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	106356790	.	T	C	302	.	AC=2;AF=1.00;AN=2;BRF=0.07;FR=1.0000;HP=2;HapScore=2;MGOF=233;MMLQ=28;MQ=60.0;NF=12;NR=1;PP=302;QD=25.9054778882;SC=ATCCCTGTCTTTCTGAGGACA;SbPval=0.64;Source=Platypus;TC=13;TCF=12;TCR=1;TR=13;WE=106356798;WS=106356788;set=Platypus	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	106356922	rs192882575	G	A	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	106357467	rs191478264	G	A	10369.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=45.68;SOR=2.230;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	106357470	rs113407144	C	T	10402.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.27;SOR=2.194;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	106357527	rs190681079	G	C	14462.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr14	106357644	rs149695294	T	C	18985.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr14	106357673	rs145534823	T	G	15230.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr14	106357749	rs2254707	CA	TG	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=3.779;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	106357758	rs143569449	A	G	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.82;SOR=4.054;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	106359218	rs185679996	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	106359259	rs2857366	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.86;QD=27.45;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	106359285	rs181750527	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	106359348	rs184135818	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	106359388	rs369242089	A	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	106359404	.	C	T	331.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.86;QD=41.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	106359406	.	A	G	331.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.86;QD=41.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	106359409	.	G	GCCA	322.75	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.86;QD=40.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	106359412	.	G	A	286.80	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.22;QD=57.36;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	106359416	.	C	T	196.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.22;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	106360217	rs150427734	C	T	5276.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=45.88;SOR=1.736;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	106360217	.	CG	TA	1844	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=1;HapScore=1;MGOF=30;MMLQ=21;MQ=60.17;NF=71;NR=28;PP=1844;QD=19.1663421703;SC=CCAGCCCATCCGCTGTGATGG;SbPval=0.44;Source=Platypus;TC=104;TCF=76;TCR=28;TR=99;WE=106360239;WS=106360207;set=Platypus	GT:AD:AF:DP	1/1:5,99:0.95:104
chr14	106360218	rs138235754	G	A	5276.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=43.25;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	106360231	rs149611346	G	A	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	106360281	rs144346910	T	C	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	106360292	rs3838842	GA	G	10674.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr14	106361376	rs190627972	T	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	106361418	rs2753533	T	C	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	106361515	rs143676405	C	T	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=24.88;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	106361561	rs61993631	GC	AT	6408.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=56.92;QD=44.51;SOR=1.235;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	106361564	rs61993633	A	T	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.79;QD=46.21;SOR=1.263;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	106361605	rs192568966	G	A	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	106363823	.	AGCT	A	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=3.402;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-10.734;QD=0.26;ReadPosRankSum=-4.503;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:322,17:0.05:339
chr14	106363828	.	C	T	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-12.351;QD=1.68;ReadPosRankSum=-6.151;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:333,27:0.07:360
chr14	106363835	rs199871660	T	C	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.327;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=4.315;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-9.529;QD=2.10;ReadPosRankSum=-6.821;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:369,48:0.12:417
chr14	106363843	rs200630737	C	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.726;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=2.936;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-5.100;QD=2.01;ReadPosRankSum=-5.288;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:406,56:0.12:462
chr14	106363915	rs112931456	T	C	1820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=8.670;QD=2.42;ReadPosRankSum=-1.169;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:655,96:0.13:751
chr14	106363919	.	T	C	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.802;ClippingRankSum=0.000;DP=738;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=9.141;QD=2.32;ReadPosRankSum=-1.356;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:651,86:0.12:737
chr14	106363921	.	T	TG	1577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.609;ClippingRankSum=0.000;DP=736;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=9.129;QD=2.15;ReadPosRankSum=-2.276;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:649,86:0.12:735
chr14	106363923	.	T	C	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DP=733;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=10.177;QD=2.18;ReadPosRankSum=-3.010;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:650,82:0.11:732
chr14	106363932	.	T	C	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.863;ClippingRankSum=0.000;DP=725;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=10.836;QD=1.82;ReadPosRankSum=-5.848;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:646,78:0.11:724
chr14	106368453	.	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=4.721;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-4.203;QD=5.11;ReadPosRankSum=-3.828;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr14	106368455	.	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=4.721;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-4.203;QD=5.11;ReadPosRankSum=-3.411;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr14	106368526	rs200686094	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.335;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-3.678;QD=6.10;ReadPosRankSum=0.458;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr14	106368542	rs201662702	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-3.738;QD=12.84;ReadPosRankSum=1.201;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr14	106368544	rs200115395	G	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-3.666;QD=13.18;ReadPosRankSum=0.953;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr14	106368551	rs201130584	A	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-3.666;QD=13.18;ReadPosRankSum=0.716;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr14	106369395	rs139933477	T	C	9584.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr14	106369433	rs112597211	T	C	11378.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr14	106369534	rs2516960	A	G	6812.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr14	106370370	rs141575023	C	T	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	106370603	rs2857350	G	C	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	106373085	rs139694830	TT	CC	8664.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	106373208	rs146631355	T	G	7388.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr14	106375551	rs2857348	C	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.88;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	106375555	rs2516957	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	106375560	rs112674522	C	T	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	106375721	rs111736413	G	A	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	106376354	rs2516955	A	G	11519.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:2,433:1.00:435
chr14	106377963	rs55694532	T	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	106378962	rs11160893	C	T	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	106379020	rs113166883	G	A	8787.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr14	106380073	rs2856850	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	106380171	rs3794478	C	T	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	106380174	rs2157630	C	A	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	106385233	rs2857334	AC	GT	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	106385245	rs2857332	C	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	106385271	.	G	A	709.77	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	106385332	rs2250700	G	C	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	106386996	rs59137576	T	C	8392.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr14	106387171	rs56082637	T	C	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	106388588	rs2516944	A	T	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	106436780	rs67875134	A	G	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	106437080	rs72715495	C	T	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	106452628	rs7144717	T	G	5380.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	106452766	rs112806369	T	A	19668.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:2,715:1.00:717
chr14	106471268	rs1143505	A	G	20417.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=45.47;SOR=1.290;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr14	106471273	rs77346190	C	T	20911.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=43.48;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr14	106471353	rs34069216	C	T	24359.77	.	AC=2;AF=1.00;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr14	106471388	rs34874585	C	A	24298.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr14	106471410	rs200773107	T	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;ClippingRankSum=0.000;DB;DP=849;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-8.264;QD=0.65;ReadPosRankSum=-8.403;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:777,70:0.08:847
chr14	106471417	rs201932522	G	A	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.393;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=3.381;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-13.352;QD=1.27;ReadPosRankSum=-6.569;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:743,80:0.10:823
chr14	106471426	rs199743220	G	T	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.413;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=4.683;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-14.984;QD=1.81;ReadPosRankSum=-3.382;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:695,85:0.11:780
chr14	106471437	rs114502996	G	T	1776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.678;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=7.079;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-16.980;QD=2.41;ReadPosRankSum=0.244;SOR=1.446;set=HC	GT:AD:AF:DP	0/1:642,94:0.13:736
chr14	106471509	rs113475512	C	A	2348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.118;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=5.084;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-6.836;QD=6.07;ReadPosRankSum=-0.407;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:302,85:0.22:387
chr14	106471515	rs200143794	C	A	2105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.561;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-7.245;QD=5.85;ReadPosRankSum=-0.061;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:289,71:0.20:360
chr14	106471522	rs111605692	C	T	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=5.263;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-7.451;QD=4.97;ReadPosRankSum=-0.473;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:277,60:0.18:337
chr14	106471528	rs35966079	C	A	10464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=4.358;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=6.587;QD=32.60;ReadPosRankSum=2.818;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:60,261:0.81:321
chr14	106471534	rs36065697	A	C,G	12722.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.31;QD=42.84;SOR=1.700;set=HC	GT:AD:AF:DP	1/2:0,52,245:0.18,0.82:297
chr14	106471547	rs1143496	A	G	12008.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr14	106471555	rs185587264	A	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=39.680;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=-5.953;QD=2.64;ReadPosRankSum=-4.775;SOR=4.252;set=HC	GT:AD:AF:DP	0/1:225,30:0.12:255
chr14	106471560	.	A	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=42.854;MLEAC=1;MLEAF=0.500;MQ=52.59;MQRankSum=-4.963;QD=1.72;ReadPosRankSum=-4.739;SOR=5.316;set=HC	GT:AD:AF:DP	0/1:213,24:0.10:237
chr14	106471563	.	C	G	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=40.897;MLEAC=1;MLEAF=0.500;MQ=52.38;MQRankSum=-4.692;QD=1.52;ReadPosRankSum=-5.181;SOR=5.339;set=HC	GT:AD:AF:DP	0/1:206,23:0.10:229
chr14	106471565	.	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=33.238;MLEAC=1;MLEAF=0.500;MQ=52.31;MQRankSum=-4.563;QD=1.42;ReadPosRankSum=-4.462;SOR=4.854;set=HC	GT:AD:AF:DP	0/1:202,18:0.08:220
chr14	106471566	.	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=30.691;MLEAC=1;MLEAF=0.500;MQ=52.31;MQRankSum=-4.630;QD=0.91;ReadPosRankSum=-4.498;SOR=4.725;set=HC	GT:AD:AF:DP	0/1:198,17:0.08:215
chr14	106471573	.	G	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.327;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=25.181;MLEAC=1;MLEAF=0.500;MQ=51.92;MQRankSum=-4.415;QD=0.28;ReadPosRankSum=-5.096;SOR=4.346;set=HC	GT:AD:AF:DP	0/1:185,15:0.07:200
chr14	106471580	rs56320742	GC	TT	8331.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr14	106471595	rs34652473	T	C	6986.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr14	106471689	rs56372013	A	C	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	106478183	rs77628366	G	T	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	106478194	rs76899215	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.51;QD=28.69;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	106478218	rs77238211	G	C	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.89;QD=23.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	106478354	rs188216744	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.40;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	106478401	rs78225485	G	A	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.89;QD=26.79;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	106494269	rs12895651	T	C	5314.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.73;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	106578952	rs11160922	A	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	106667902	rs58794564	A	AC	28122.73	.	AC=2;AF=1.00;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	1/1:0,791:1.00:791
chr14	106691657	rs34019594	T	C	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-6.616;QD=2.08;ReadPosRankSum=2.349;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:219,43:0.16:262
chr14	106691688	rs201063032	C	A	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.500;MQ=52.37;MQRankSum=-7.504;QD=2.65;ReadPosRankSum=-2.523;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:357,90:0.20:447
chr14	106691778	rs4470054	T	A	7166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=4.989;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-24.387;QD=6.94;ReadPosRankSum=9.596;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:795,237:0.23:1032
chr14	106691796	.	GTAA	G	7337.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.145;ClippingRankSum=0.000;DP=1066;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-27.616;QD=6.92;ReadPosRankSum=7.295;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:827,234:0.22:1061
chr14	106691800	.	C	G	7256.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.759;ClippingRankSum=0.000;DP=1056;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-27.620;QD=6.90;ReadPosRankSum=6.700;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:815,236:0.22:1051
chr14	106725482	rs56069819	A	C	15905.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr14	106725517	rs140098248	A	G	5119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=11.204;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-6.309;QD=8.98;ReadPosRankSum=-3.198;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:417,153:0.27:570
chr14	106725521	rs143792912	A	C	5359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.897;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=12.708;MLEAC=1;MLEAF=0.500;MQ=54.54;MQRankSum=-6.453;QD=9.35;ReadPosRankSum=-1.747;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:419,154:0.27:573
chr14	106725523	rs146848049	C	A	5770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.775;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=11.101;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-6.322;QD=9.90;ReadPosRankSum=-1.301;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:424,159:0.27:583
chr14	106725538	rs71416657	G	T	6547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.774;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=9.206;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=-6.080;QD=10.93;ReadPosRankSum=1.731;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:418,181:0.30:599
chr14	106725545	rs184685096	GT	AA	7114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=9.015;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.43;MQRankSum=-6.202;QD=11.78;ReadPosRankSum=3.028;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:411,193:0.32:604
chr14	106725558	.	C	A	7565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.906;ClippingRankSum=0.000;DP=618;ExcessHet=3.0103;FS=6.385;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-8.048;QD=12.30;ReadPosRankSum=5.212;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:404,211:0.34:615
chr14	106725574	rs12433829	T	C	7924.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:402,225:0.36:627
chr14	106725644	.	CCA	C	3511.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.201;ClippingRankSum=0.000;DP=366;ExcessHet=3.0103;FS=12.263;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-13.975;QD=10.30;ReadPosRankSum=-0.266;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:239,102:0.30:341
chr14	106725647	.	A	ATG	3511.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=11.153;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-13.774;QD=10.55;ReadPosRankSum=-0.578;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:231,102:0.31:333
chr14	106725653	.	A	T	3097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.459;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=7.541;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-13.443;QD=10.40;ReadPosRankSum=-2.076;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:208,90:0.30:298
chr14	106725658	.	GA	G	2863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=7.006;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-13.714;QD=10.19;ReadPosRankSum=-2.208;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:200,81:0.29:281
chr14	106725662	rs12433853	T	C	2731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=8.404;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-14.031;QD=9.93;ReadPosRankSum=-2.003;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:198,77:0.28:275
chr14	106725667	.	C	G	2416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.566;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=3.668;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-14.263;QD=9.55;ReadPosRankSum=-1.836;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:187,66:0.26:253
chr14	106733216	rs201747581	T	C	10426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510;ClippingRankSum=0.000;DB;DP=1034;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-14.756;QD=10.44;ReadPosRankSum=5.138;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:693,306:0.31:999
chr14	106733223	rs200123370	T	G	9995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=1040;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-15.265;QD=9.93;ReadPosRankSum=5.891;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:716,291:0.29:1007
chr14	106733228	rs201071498	C	T	9792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.114;ClippingRankSum=0.000;DB;DP=1053;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-15.476;QD=9.60;ReadPosRankSum=5.608;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:736,284:0.28:1020
chr14	106733254	rs200146986	G	C	7174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.551;ClippingRankSum=0.000;DB;DP=1043;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-17.124;QD=7.06;ReadPosRankSum=0.045;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:782,234:0.23:1016
chr14	106733261	.	G	T	7045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DP=1026;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-17.775;QD=7.02;ReadPosRankSum=-2.954;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:778,225:0.22:1003
chr14	106733287	.	A	C	3125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.695;ClippingRankSum=0.000;DP=921;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-23.567;QD=3.43;ReadPosRankSum=-5.821;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:777,134:0.15:911
chr14	106733289	.	CC	AG	3150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.233;ClippingRankSum=0.000;DP=908;ExcessHet=3.0103;FS=3.888;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-24.146;QD=3.50;ReadPosRankSum=-5.882;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:772,127:0.14:899
chr14	106733318	.	A	G	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.163;ClippingRankSum=0.000;DP=752;ExcessHet=3.0103;FS=2.094;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-26.448;QD=1.22;ReadPosRankSum=-7.738;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:677,71:0.09:748
chr14	106733325	rs370730270	C	T	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.587;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=3.560;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-25.839;QD=1.28;ReadPosRankSum=-7.705;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:653,65:0.09:718
chr14	106733339	.	GGA	G	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;ClippingRankSum=0.000;DP=621;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-22.529;QD=0.67;ReadPosRankSum=-3.022;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:568,49:0.08:617
chr14	106733343	.	A	AGT	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.613;ClippingRankSum=0.000;DP=588;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-21.175;QD=0.76;ReadPosRankSum=-4.389;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:535,47:0.08:582
chr14	106733345	.	T	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.512;ClippingRankSum=0.000;DP=565;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-19.902;QD=0.80;ReadPosRankSum=-0.905;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:515,44:0.08:559
chr14	106733348	rs8012809	A	G	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-19.114;QD=0.50;ReadPosRankSum=-0.180;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:496,43:0.08:539
chr14	106733353	.	G	A	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.883;ClippingRankSum=0.000;DP=532;ExcessHet=3.0103;FS=3.481;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-17.571;QD=1.07;ReadPosRankSum=-0.230;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:477,49:0.09:526
chr14	106733363	rs200751248	G	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.215;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-16.593;QD=1.51;ReadPosRankSum=1.668;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:441,51:0.10:492
chr14	106733380	rs200914519	CC	TT	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=2.795;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-13.651;QD=3.63;ReadPosRankSum=2.491;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:353,61:0.15:414
chr14	106733389	rs200188513	AG	TA	1705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.401;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=3.260;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-12.570;QD=4.47;ReadPosRankSum=3.115;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:317,65:0.17:382
chr14	106733437	rs112335453	G	C	2153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=4.526;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-8.005;QD=8.76;ReadPosRankSum=1.881;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:179,67:0.27:246
chr14	106733458	rs116600694	G	A	2652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-5.996;QD=11.39;ReadPosRankSum=-0.576;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:158,75:0.32:233
chr14	106733461	rs78432605	C	G	2573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-5.832;QD=11.09;ReadPosRankSum=-0.467;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:158,74:0.32:232
chr14	106733463	rs116472681	G	A	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-5.695;QD=11.12;ReadPosRankSum=-0.231;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:160,73:0.31:233
chr14	106733520	rs2338199	C	A	7268.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr14	106733532	rs116710349	G	A	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:141,71:0.33:212
chr14	106733555	rs8013154	A	G	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:138,73:0.35:211
chr14	106733593	rs4511432	G	T	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-4.725;QD=8.04;ReadPosRankSum=-1.825;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:110,74:0.40:184
chr14	106733638	rs8013719	G	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr14	106733653	rs114563889	A	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr14	106733679	rs116541104	G	C	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-3.442;QD=15.12;ReadPosRankSum=-0.183;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr14	106733682	rs114939362	G	C	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-3.533;QD=15.44;ReadPosRankSum=0.327;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr14	106758201	rs2073677	G	T	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	106780634	rs34629512	G	A	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	106780757	.	G	GTC	7295.73	.	AC=2;AF=1.00;AN=2;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=43.95;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	106780760	.	TCC	T	7206.73	.	AC=2;AF=1.00;AN=2;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.78;QD=45.04;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	106780817	rs8009554	A	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	106845193	rs10129987	C	G	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.06;QD=35.00;SOR=8.051;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	106845209	rs10129994	C	G	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	106859351	rs1008525	G	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.73;QD=28.06;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	106859421	rs11160957	A	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.84;QD=31.15;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	106877551	rs8020298	A	C	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	106937467	.	G	GC	522.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.63;QD=34.85;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	106940351	rs142032068	C	T	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=15.138;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-15.633;QD=2.71;ReadPosRankSum=-5.397;SOR=1.586;set=HC	GT:AD:AF:DP	0/1:205,53:0.21:258
chr14	107013201	rs2073673	G	T	17559.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr14	107078567	rs2516904	T	C	12884.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr14	107078790	rs1858692	C	T	12370.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr14	107082871	rs144729059	A	ATGC	2796.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	107082879	rs59681319	C	CG	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.82;QD=45.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	107082880	.	T	G	511	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=24;MQ=56.81;NF=12;NR=12;PP=511;QD=22.7404671895;SC=GATGAGAAGCTTGATATATAT;SbPval=0.45;Source=Platypus;TC=28;TCF=15;TCR=13;TR=24;WE=107082905;WS=107082861;set=Platypus	GT:AD:AF:DP	1/1:4,24:0.86:28
chr14	107082881	rs59072447	T	TA,TTAG	2662.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AF:DP	1/1:1.00:58
chr14	107082882	rs61261254	G	GA	2572.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.58;QD=47.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	107082889	rs4043174	A	ATTT	2387.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	107082897	rs2337902	T	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	107170005	rs1141720	T	C	12830.77	.	AC=1;AF=0.500;AN=2;DB;DP=1200;set=Intersection	GT:AD:AF:DP	0/1:590,605:0.51:1195
chr14	107170243	rs74089692	G	C	5134.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:212,206:0.49:418
chr14	107170398	rs4448834	C	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:97,105:0.52:202
chr14	107178795	rs10144331	A	G	6382.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	107178832	rs10144402	A	G	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	107178941	rs10133751	T	A	4973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=10.77;ReadPosRankSum=0.255;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:230,232:0.50:462
chr14	107178965	rs2073669	A	C	4625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.962;QD=9.50;ReadPosRankSum=0.038;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:254,233:0.48:487
chr14	107179017	rs61732209	A	G	4112.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:238,199:0.46:437
chr14	107179106	rs10144703	C	T	3894.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:164,168:0.51:332
chr14	107198866	rs1987970	T	G	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	107211211	rs2073668	G	A	15196.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr14	107282742	.	C	CT	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.938;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=41.991;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-12.533;QD=2.56;ReadPosRankSum=-4.509;SOR=5.543;set=HC	GT:AD:AF:DP	0/1:140,19:0.12:159
chr14	107282744	.	A	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.930;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=47.480;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-12.804;QD=2.47;ReadPosRankSum=-2.889;SOR=5.721;set=HC	GT:AD:AF:DP	0/1:145,21:0.13:166
chr14	107282746	.	AT	A	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.224;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=47.030;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-12.960;QD=2.75;ReadPosRankSum=-2.626;SOR=5.680;set=HC	GT:AD:AF:DP	0/1:149,21:0.12:170
chr14	107282752	.	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.165;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=52.649;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-13.124;QD=2.97;ReadPosRankSum=-3.441;SOR=5.916;set=HC	GT:AD:AF:DP	0/1:159,24:0.13:183
chr14	107282756	.	C	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.476;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=46.038;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-12.499;QD=2.94;ReadPosRankSum=-3.466;SOR=4.654;set=HC	GT:AD:AF:DP	0/1:163,27:0.14:190
chr14	107282785	.	TG	CT	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.124;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=49.973;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-13.355;QD=7.09;ReadPosRankSum=-2.242;SOR=3.001;set=HC	GT:AD:AF:DP	0/1:206,60:0.23:266
chr14	107282791	.	A	C	1961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.458;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=48.521;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-13.622;QD=7.21;ReadPosRankSum=-1.032;SOR=2.915;set=HC	GT:AD:AF:DP	0/1:209,63:0.23:272
chr14	107282809	rs201928713	T	C	2653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.141;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=58.369;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-14.595;QD=8.91;ReadPosRankSum=1.715;SOR=2.989;set=HC	GT:AD:AF:DP	0/1:218,80:0.27:298
chr14	107282813	rs199801132	CA	AG	2675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=54.127;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-14.862;QD=8.72;ReadPosRankSum=2.989;SOR=2.795;set=HC	GT:AD:AF:DP	0/1:226,81:0.26:307
chr14	107282836	rs201902530	T	A	4569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=15.338;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-12.484;QD=13.09;ReadPosRankSum=0.852;SOR=1.327;set=HC	GT:AD:AF:DP	0/1:225,124:0.36:349
chr14	107282846	rs200859769	G	A	5784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=4.067;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-11.523;QD=15.43;ReadPosRankSum=-0.038;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:226,149:0.40:375
chr14	107282852	rs201336503	T	C	3347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.247;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-10.966;QD=8.35;ReadPosRankSum=-1.572;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:227,174:0.43:401
chr14	107282859	rs201095197	G	A	7206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.627;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-10.378;QD=17.12;ReadPosRankSum=-2.211;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:223,198:0.47:421
chr14	107282872	rs61741319	T	A	5899.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:225,235:0.51:460
chr14	107282909	rs202202987	T	C	5404.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:258,259:0.50:517
chr14	107282926	rs149038822	A	T	9537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.997;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=10.454;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-12.445;QD=17.47;ReadPosRankSum=6.387;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:290,256:0.47:546
chr14	107282935	rs201762529	A	T	9232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=11.946;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-12.174;QD=16.76;ReadPosRankSum=7.413;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:309,242:0.44:551
chr14	107282973	rs200848671	G	C	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:319,203:0.39:522
chr14	107282988	.	C	G	4456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=11.795;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-12.354;QD=9.67;ReadPosRankSum=-9.244;SOR=1.452;set=HC	GT:AD:AF:DP	0/1:311,150:0.33:461
chr14	107282994	.	G	C	3842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.051;ClippingRankSum=0.000;DP=416;ExcessHet=3.0103;FS=26.335;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-14.453;QD=9.26;ReadPosRankSum=-6.512;SOR=2.236;set=HC	GT:AD:AF:DP	0/1:316,99:0.24:415
chr14	107282996	.	G	A	3156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.973;ClippingRankSum=0.000;DP=409;ExcessHet=3.0103;FS=25.181;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-14.605;QD=7.74;ReadPosRankSum=-6.540;SOR=2.277;set=HC	GT:AD:AF:DP	0/1:315,93:0.23:408
chr14	107283002	.	AC	GG	2199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.494;ClippingRankSum=0.000;DP=377;ExcessHet=3.0103;FS=49.995;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-15.531;QD=5.85;ReadPosRankSum=-6.400;SOR=2.606;set=HC	GT:AD:AF:DP	0/1:304,72:0.19:376
chr14	107283008	rs113134619	A	T	1698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.502;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=48.308;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-16.374;QD=4.73;ReadPosRankSum=-7.037;SOR=2.772;set=HC	GT:AD:AF:DP	0/1:298,61:0.17:359
chr14	107283150	rs35227799	G	T	6793.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.417;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	107283156	rs10133664	A	G	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	107283160	rs10133737	C	T	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=1.422;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	20170150	rs10431885	C	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.878;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-3.087;QD=1.72;ReadPosRankSum=-2.386;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:386,81:0.17:467
chr15	20433733	rs3926481	A	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr15	20433755	rs4114043	G	A	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	20444794	rs2722084	C	T	9493.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:243,397:0.62:640
chr15	20445987	rs4931804	C	T	4391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=4.545;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.672;QD=11.44;ReadPosRankSum=0.138;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:168,216:0.56:384
chr15	20446043	rs1823751	T	A	8140.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:157,368:0.70:525
chr15	20447987	rs8024775	A	G	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:6,40:0.87:46
chr15	20448056	rs8024950	A	G	1915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=10.452;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-8.672;QD=11.90;ReadPosRankSum=-0.721;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:73,88:0.55:161
chr15	20448077	rs3963874	T	A,C	6217.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=255;set=Intersection	GT:AF:DP	1/2:0.55,0.45:255
chr15	20450100	.	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.648;ClippingRankSum=0.000;DP=314;ExcessHet=3.0103;FS=5.666;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-0.041;QD=0.32;ReadPosRankSum=1.197;SOR=1.240;set=HC	GT:AD:AF:DP	0/1:275,39:0.12:314
chr15	20450241	rs201398108	C	A	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-4.288;QD=2.33;ReadPosRankSum=0.566;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:642,88:0.12:730
chr15	20450242	rs2444187	G	T	1721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-4.674;QD=2.35;ReadPosRankSum=0.818;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:646,88:0.12:734
chr15	20450400	.	A	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.21;ReadPosRankSum=-1.864;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:331,45:0.12:376
chr15	20453825	rs7167849	A	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:7,47:0.87:54
chr15	20453896	rs2601517	G	C	2302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-0.938;QD=21.32;ReadPosRankSum=-1.439;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:16,92:0.85:108
chr15	20453896	.	GTGGA	CTGGA,CTGGG	1295	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=28;MQ=57.8;NF=52,5;NR=34,3;PP=1295,58;QD=15.4624559599;SC=GGACCCACATGTGGATGCAGA;SbPval=0.54;Source=Platypus;TC=101;TCF=61;TCR=40;TR=86,8;WE=20453922;WS=20453886;set=Platypus	GT:AF:DP	0/1:0.85:101
chr15	20453992	rs4931912	T	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=7.676;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-4.277;QD=0.63;ReadPosRankSum=-0.515;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:141,22:0.13:163
chr15	20454025	rs4931913	A	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=55.80;MQRankSum=-4.740;QD=1.60;ReadPosRankSum=1.659;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:129,28:0.18:157
chr15	20454042	rs7168242	A	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-3.620;QD=0.71;ReadPosRankSum=1.785;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:125,20:0.14:145
chr15	20454162	rs4931914	C	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.661;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-5.022;QD=1.40;ReadPosRankSum=-0.070;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr15	20456517	rs12593833	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr15	20456640	rs8041606	A	G	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.682;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-10.720;QD=8.27;ReadPosRankSum=1.801;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:114,42:0.27:156
chr15	20456665	rs8026258	T	A	1761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-10.870;QD=10.55;ReadPosRankSum=0.571;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:120,47:0.28:167
chr15	20456673	rs8033709	C	G	1702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-10.883;QD=9.96;ReadPosRankSum=0.614;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:122,49:0.29:171
chr15	20456677	rs8037872	G	A	1705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-10.616;QD=9.92;ReadPosRankSum=0.289;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:121,51:0.30:172
chr15	20456682	rs58201907	G	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-7.494;QD=0.76;ReadPosRankSum=1.142;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:151,26:0.15:177
chr15	20456740	rs2954579	A	G	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:33,172:0.84:205
chr15	20457155	rs11856094	A	C	5037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.846;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=54.32;MQRankSum=-10.998;QD=22.59;ReadPosRankSum=-0.785;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:98,125:0.56:223
chr15	20457155	.	ACC	CCT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=1;MGOF=8;MMLQ=28;MQ=51.33;NF=93;NR=30;PP=2944;QD=20;SC=GCCAGCATTTACCGCCCACTC;SbPval=0.55;Source=Platypus;TC=225;TCF=169;TCR=56;TR=123;WE=20457165;WS=20457154;set=Platypus	GT:AD:AF:DP	0/1:102,123:0.55:225
chr15	20457157	rs11854770	C	T	5037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.731;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=54.13;MQRankSum=-11.156;QD=21.81;ReadPosRankSum=-0.861;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:101,130:0.56:231
chr15	20457291	rs6599891	T	C	13485.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:181,573:0.76:754
chr15	20457319	rs8038741	C	A	3665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-5.026;QD=4.51;ReadPosRankSum=0.525;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:587,225:0.28:812
chr15	20462585	rs3901622	A	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:122,56:0.31:178
chr15	20462613	rs28374902	G	C	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:139,89:0.39:228
chr15	20462690	rs6422224	T	G	4870.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:80,217:0.73:297
chr15	20462720	rs28522508	G	A	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-3.798;QD=6.55;ReadPosRankSum=-1.627;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:163,94:0.37:257
chr15	20462792	rs62009635	T	G	68.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.178;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.062;QD=0.76;ReadPosRankSum=-0.041;SOR=1.303;set=HC	GT:AD:AF:DP	0/1:79,12:0.13:91
chr15	20462793	rs77195941	ATTT	A	834.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.699;QD=9.59;ReadPosRankSum=0.260;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr15	20462810	rs28679605	T	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr15	20462828	rs8039793	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr15	20464736	rs112424577	C	CA	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.685;QD=2.19;ReadPosRankSum=0.287;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:104,38:0.27:142
chr15	20464860	rs7177447	G	T	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:61,95:0.61:156
chr15	20465014	rs62009640	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-0.294;QD=2.39;ReadPosRankSum=0.646;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr15	20465103	rs6599901	A	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr15	20465167	rs10794632	A	T	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-3.878;QD=3.98;ReadPosRankSum=1.497;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:92,19:0.17:111
chr15	20465182	rs10794633	T	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-3.270;QD=5.52;ReadPosRankSum=-0.619;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr15	20465246	rs8038116	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr15	20466348	rs11248734	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.417;QD=0.27;ReadPosRankSum=-0.033;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:98,15:0.13:113
chr15	20466352	rs4983837	T	C	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.388;QD=8.66;ReadPosRankSum=0.300;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:81,41:0.34:122
chr15	20466516	rs4983836	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	20466546	rs4931936	C	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=42.26;MQRankSum=0.620;QD=2.96;ReadPosRankSum=-0.748;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	20466604	rs4983834	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.75;QD=33.65;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	20467075	rs60364561	C	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.542;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-2.888;QD=1.68;ReadPosRankSum=1.310;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:142,34:0.19:176
chr15	20467100	rs4983661	A	G	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:69,159:0.70:228
chr15	20467242	rs59808209	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=0.302;QD=1.22;ReadPosRankSum=0.358;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:155,26:0.14:181
chr15	20468050	rs4983831	A	G	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:197,83:0.30:280
chr15	20476942	rs4983659	C	T	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.266;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:892,198:0.18:1090
chr15	20477005	rs4248783	G	C	3837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.372;ClippingRankSum=0.000;DB;DP=2086;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.100;QD=1.85;ReadPosRankSum=0.484;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:1700,370:0.18:2070
chr15	20477090	rs4931940	T	C	6398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=1602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-1.339;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:1168,427:0.27:1595
chr15	20481817	rs61468854	CA	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-1.054;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr15	20481882	rs11248739	G	T	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=4.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.954;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr15	20482021	rs28602347	C	G	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:313,152:0.33:465
chr15	20482083	rs28576026	G	A	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:255,126:0.33:381
chr15	20482115	rs28702675	A	G	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:198,87:0.31:285
chr15	20482142	rs60748331	A	C	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.038;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:149,62:0.29:211
chr15	20588563	rs2291972	A	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:76,37:0.33:113
chr15	20588705	rs4931826	C	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.185;QD=0.58;ReadPosRankSum=0.534;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:236,39:0.14:275
chr15	20613928	rs373703433	G	A	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.070;QD=3.56;ReadPosRankSum=-0.621;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:326,112:0.26:438
chr15	20874897	rs7497658	A	G	18964.77	.	AC=2;AF=1.00;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	1/1:51,782:0.94:833
chr15	20875055	rs7496378	C	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.124;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:181,27:0.13:208
chr15	20875100	rs7497715	A	G	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:44,81:0.65:125
chr15	20875126	rs7497743	A	G	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.10;ReadPosRankSum=-0.932;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:32,57:0.64:89
chr15	20876423	rs10902996	A	G	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:272,135:0.33:407
chr15	20876515	rs6422240	A	G	15674.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:40,617:0.94:657
chr15	21145489	rs61998326	A	C	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.95;MQRankSum=-2.965;QD=15.52;ReadPosRankSum=0.191;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	21145503	rs74912473	G	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.32;QD=40.88;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	21236521	rs369925461	C	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=13.40;ReadPosRankSum=1.180;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	22156674	rs138833999	C	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-3.323;QD=2.44;ReadPosRankSum=-0.827;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr15	22156928	rs150801989	G	C	2241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.548;QD=8.93;ReadPosRankSum=0.164;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:137,114:0.45:251
chr15	22318824	rs35131467	AC	A	1778.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,51:0.82:62
chr15	22318963	rs1429506	A	T	7807.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:50,339:0.87:389
chr15	22319148	rs71455753	C	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.265;QD=1.64;ReadPosRankSum=-0.020;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:356,69:0.16:425
chr15	22319380	rs143307154	C	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:133,54:0.29:187
chr15	22319483	rs995427	G	A	8524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.943;QD=20.06;ReadPosRankSum=-0.687;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:64,361:0.85:425
chr15	22319497	rs1366875	G	C	4192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=4.057;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=2.120;QD=9.87;ReadPosRankSum=-0.854;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:225,200:0.47:425
chr15	22319565	rs4779265	G	A	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.989;QD=1.76;ReadPosRankSum=-1.230;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:219,49:0.18:268
chr15	22332751	rs930109	T	C	9103.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr15	22344871	rs28571003	A	G	15049.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.90;QD=43.88;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr15	22344879	rs1366870	C	G	14660.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.31;QD=45.11;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr15	22344951	rs1366871	T	C	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.99;QD=33.38;SOR=3.932;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	22345038	rs1429471	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.39;QD=32.96;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	22345134	rs13380116	C	G	2867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=6.984;MLEAC=1;MLEAF=0.500;MQ=50.86;MQRankSum=1.097;QD=18.74;ReadPosRankSum=-0.626;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:26,127:0.83:153
chr15	22345178	rs61690271	C	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-0.376;QD=2.22;ReadPosRankSum=-1.037;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:156,36:0.19:192
chr15	22368862	rs1835183	G	A	17140.77	.	AC=1;AF=0.500;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	0/1:151,699:0.82:850
chr15	22368905	rs1835182	G	A	17566.77	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:153,733:0.83:886
chr15	22369248	rs491208	T	C	13618.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr15	22369290	rs12593418	A	G	5993.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:299,289:0.49:588
chr15	22369426	rs4087943	G	A	15172.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=27.19;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,558:1.00:558
chr15	22382739	rs2671839	A	G	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.53;QD=32.19;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	22383066	rs559754	A	G	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	22383189	rs1820851	G	A	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr15	22383482	rs3841636	GA	G	1903.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	22413700	rs267612	A	G	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.66;QD=32.12;SOR=1.573;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	22413825	rs267613	C	T	10474.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:79,442:0.85:521
chr15	22413940	rs7167256	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=0.455;QD=0.12;ReadPosRankSum=0.128;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:282,37:0.12:319
chr15	22414393	rs200221521	C	CAAA	2767.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.971;QD=22.50;ReadPosRankSum=2.672;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:26,97:0.79:123
chr15	22440816	rs4505267	A	G	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.166;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:383,78:0.17:461
chr15	22482858	rs1807224	A	G	6086.77	.	AC=1;AF=0.500;AN=2;DB;DP=1171;set=Intersection	GT:AD:AF:DP	0/1:810,358:0.31:1168
chr15	22483277	rs753259	A	G	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:73,48:0.40:121
chr15	22489958	rs111826301	C	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.239;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:86,15:0.15:101
chr15	22489966	rs72687799	A	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.041;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr15	22489988	rs72687801	G	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.00;ReadPosRankSum=0.645;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:68,15:0.18:83
chr15	22490019	rs112521162	T	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.56;ReadPosRankSum=2.097;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr15	22490035	rs72687802	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr15	22840279	rs61744212	G	T	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:19,93:0.83:112
chr15	22845637	rs144200387	T	TTATTTTTAAA	1982.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:8,42:0.84:50
chr15	22845652	rs71400446	T	C	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:8,62:0.89:70
chr15	22855009	rs201832987	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr15	22855425	rs35571762	C	T	693.28	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:3,26:0.90:29
chr15	22864438	rs35914296	A	G	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:17,76:0.82:93
chr15	22869764	rs2289814	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:9,61:0.87:70
chr15	22873325	rs1046860	A	G	5999.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:43,241:0.85:284
chr15	22926307	rs7403459	A	G	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr15	22939192	rs11633474	G	A	4805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=5.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.38;ReadPosRankSum=-0.676;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:39,209:0.84:248
chr15	22940670	rs3751566	C	T	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:21,103:0.83:124
chr15	22940866	rs45464395	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=3.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=-0.859;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:307,42:0.12:349
chr15	22955013	rs2289816	T	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	22962359	rs72698053	C	T	4148.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:26,176:0.87:202
chr15	22963733	rs72698056	C	T	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:30,151:0.83:181
chr15	22999940	rs11307802	TG	T	771.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;MQ=60.39;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr15	23000272	rs999842	A	G	3058.18	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:14,129:0.90:143
chr15	23006215	rs78803812	CCTTT	C	3249.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:6,79:0.93:85
chr15	23019676	.	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.813;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr15	23021113	rs7170784	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr15	23049369	rs12592629	G	A	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:14,96:0.87:110
chr15	23052632	rs11263683	T	C	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	23059394	rs1991922	C	T	9018.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr15	23131745	rs7181884	G	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.30;QD=27.72;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	23138992	rs202076313	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.73;QD=31.66;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	23182537	rs189988840	C	T	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	23200698	rs58552405	A	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.49;QD=29.32;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	23300033	rs1058831	T	C	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	23685004	rs34879341	G	GCAT	13069.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr15	23685343	rs74203443	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.58;QD=22.26;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	23685463	.	G	GCTCCCATATC	2971	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=1;MGOF=61;MMLQ=28;MQ=46.84;NF=12;NR=2;PP=2971;QD=20;SC=TTCTGCTCCTGATCTCCTGCT;SbPval=0.88;Source=Platypus;TC=16;TCF=12;TCR=4;TR=14;WE=23685483;WS=23685453;set=Platypus	GT:AD:AF:DP	0/1:2,14:0.88:16
chr15	23685475	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=1;MGOF=61;MMLQ=22;MQ=48.45;NF=182;NR=78;PP=2962;QD=20;SC=TCTCCTGCTCCTGCATCTTCT;SbPval=0.55;Source=Platypus;TC=506;TCF=352;TCR=154;TR=260;WE=23685483;WS=23685453;set=Platypus	GT:AD:AF:DP	0/1:246,260:0.51:506
chr15	23685541	rs375981990	CT	C	35909.73	.	AC=2;AF=1.00;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	1/1:0,912:1.00:912
chr15	23685583	rs368496365	T	C	9954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=3.679;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-2.791;QD=10.18;ReadPosRankSum=-8.424;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:663,315:0.32:978
chr15	23685604	.	TC	T	5211.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.680;ClippingRankSum=0.000;DP=919;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-1.748;QD=5.78;ReadPosRankSum=-11.591;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:639,262:0.29:901
chr15	23685606	.	TCTTCCTGCTCCCACATCTTCTCCTCCTGCTCCCGCATCTTC	T	4743.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DP=966;ExcessHet=3.0103;FS=2.901;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-2.172;QD=5.04;ReadPosRankSum=-11.663;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:682,260:0.28:942
chr15	23685639	rs374969803	C	T	9418.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:279,431:0.61:710
chr15	23685895	rs111853398	C	T	10314.77	.	AC=1;AF=0.500;AN=2;DB;DP=1164;set=Intersection	GT:AD:AF:DP	0/1:609,548:0.47:1157
chr15	23685922	.	C	CCCGCATCTTCTCCTCCTGCTT	23457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230;ClippingRankSum=0.000;DP=1339;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-10.855;QD=20.10;ReadPosRankSum=2.558;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:628,539:0.46:1167
chr15	23686010	.	T	TCTC	8672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;ClippingRankSum=0.000;DP=1212;ExcessHet=3.0103;FS=8.599;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-12.725;QD=7.99;ReadPosRankSum=4.002;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:814,271:0.25:1085
chr15	23686019	.	G	C	8038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;ClippingRankSum=0.000;DP=1096;ExcessHet=3.0103;FS=9.009;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-13.514;QD=7.42;ReadPosRankSum=0.072;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:834,249:0.23:1083
chr15	23686031	rs75983100	T	C	6977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=1056;ExcessHet=3.0103;FS=6.604;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-14.321;QD=6.64;ReadPosRankSum=-5.982;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:830,221:0.21:1051
chr15	23686045	.	A	ATCTTCTCCTCCTGGCCCCACATCT	6461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.615;ClippingRankSum=0.000;DP=1014;ExcessHet=3.0103;FS=8.884;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-16.999;QD=6.40;ReadPosRankSum=-10.840;SOR=1.465;set=HC	GT:AD:AF:DP	0/1:833,177:0.18:1010
chr15	23686062	rs202194865	T	C	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=899;ExcessHet=3.0103;FS=5.755;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-28.199;QD=0.69;ReadPosRankSum=-2.216;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:826,69:0.08:895
chr15	23686067	.	TCTC	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DP=904;ExcessHet=3.0103;FS=4.114;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-29.430;QD=0.12;ReadPosRankSum=0.601;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:839,61:0.07:900
chr15	23686598	rs35708006	T	C	11140.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr15	23686673	rs59122400	G	A	9917.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr15	23686914	rs57504140	T	A	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.05;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	23686924	rs58446506	T	C	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.69;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	23687812	rs2344891	T	G	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	23687818	rs72495057	CT	C	4571.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=39.75;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	23688944	rs4778531	A	G	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	23689510	rs12902150	C	G	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr15	23807195	rs142074537	G	A	9683.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:93,430:0.82:523
chr15	23811592	rs2239669	C	T	4239.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:31,174:0.85:205
chr15	23889033	rs9785	G	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	23891604	rs2233061	G	A	1359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.568;QD=18.38;ReadPosRankSum=-0.398;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:11,63:0.85:74
chr15	23931507	rs2192206	G	A	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:17,89:0.84:106
chr15	23932467	rs3743340	G	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=0.740;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr15	24922208	rs12905237	C	G	27490.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr15	24922230	rs3742950	C	G	30496.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:0,745:1.00:745
chr15	24923390	rs60574723	C	T	21726.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr15	25212955	.	GAAAAAAA	G	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.81;ReadPosRankSum=-0.381;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,26:0.93:28
chr15	25307562	rs7402542	A	G	13866.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:2,546:1.00:548
chr15	25310440	rs6576402	A	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	25319287	.	GT	G	1081.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=4.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=0.072;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:55,89:0.62:144
chr15	25321029	rs4906699	C	T	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:42,183:0.81:225
chr15	25324141	rs4344720	C	T	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:12,60:0.83:72
chr15	25328715	rs3803326	T	C	4602.18	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:23,182:0.89:205
chr15	25330550	rs3803328	T	A	6819.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:36,278:0.89:314
chr15	25415693	rs2739837	T	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.96;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	25415693	.	TG	CA,CG	468	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.02;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=29;MMLQ=23;MQ=60.0;NF=8,35;NR=1,2;PP=61,468;QD=12.7186527625;SC=ATGGTGACCATGGAGGAAGAC;SbPval=0.39;Source=Platypus;TC=37;TCF=35;TCR=2;TR=9,37;WE=25415702;WS=25415692;set=Platypus	GT:AF:DP	0/1:0.24:37
chr15	25415694	rs1883008	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.665;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	25415759	rs2714734	G	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	25415809	rs2739838	C	T	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	25415825	rs1883009	C	T	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:25,105:0.81:130
chr15	25427395	rs145371358	G	A	1005.10	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:4,38:0.90:42
chr15	25474284	rs150139827	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-1.556;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:263,40:0.13:303
chr15	25652101	rs8032479	C	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	25924539	rs1047700	T	C	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:26,143:0.85:169
chr15	25925094	rs3816800	C	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.003;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:114,23:0.17:137
chr15	25925195	rs3736186	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	25926179	rs2076744	C	T	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.71;ReadPosRankSum=-0.372;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:12,85:0.88:97
chr15	25926186	rs2076743	G	A	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=42.44;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	25926325	rs35849027	T	TAAC	895.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=42.65;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	25932718	.	ACAGGCGAAGGAGGATGGAGCAGGTTGTCCATGGCCTCCCATCTGCTCCATCCTCCTTCGCCTCATT	A	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.993;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.646;QD=0.79;ReadPosRankSum=-2.548;SOR=1.961;set=HC	GT:AD:AF:DP	0/1:44,6:0.12:50
chr15	25937004	rs2066705	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.137;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:311,52:0.14:363
chr15	25937033	rs4906745	T	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.591;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:196,30:0.13:226
chr15	25958797	rs2291351	G	A	3760.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:29,165:0.85:194
chr15	25961964	rs10873607	A	G	8645.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr15	25963599	rs8024374	A	G	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	25967085	rs1564828	T	C	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr15	25972202	rs33946132	C	CAAAA	1024.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;QD=42.70;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	25981190	rs7173593	A	G	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	25981367	rs7177724	C	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	26260456	rs370137954	CT	C	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.358;QD=3.12;ReadPosRankSum=-1.398;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr15	26806064	rs3751582	T	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr15	26866738	rs45542840	C	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	26887814	rs754186	A	G	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=2.459;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	26887879	rs754185	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	27017536	rs8179186	G	A	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:142,70:0.33:212
chr15	27018187	.	TGCC	T	512.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	27018797	rs20318	G	A	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-1.453;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr15	27018937	rs20317	G	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,21:0.32:66
chr15	27019040	rs4906901	C	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	27128174	rs79895435	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.927;SOR=0.080;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr15	27128461	rs140680	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr15	27182357	rs140682	T	C	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr15	27184435	rs12910925	C	T	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:120,72:0.38:192
chr15	27184482	rs34560927	C	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:109,52:0.32:161
chr15	27184517	rs17647384	G	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:86,37:0.30:123
chr15	27188335	rs140683	T	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr15	27188353	rs140684	C	A	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	27188459	rs140685	C	T	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-2.255;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:76,48:0.39:124
chr15	27216746	rs2288694	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr15	27516740	rs76888516	GAGTC	G	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=1.661;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:69,16:0.19:85
chr15	27772676	rs140679	C	T	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:41,66:0.62:107
chr15	27772892	rs2303879	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr15	27890359	rs1841875	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr15	27890571	rs5811500	GT	G	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr15	28090326	rs74005248	G	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr15	28096538	rs1800419	A	G	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr15	28116275	rs7175046	G	C	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:39,100:0.72:139
chr15	28196821	rs7173419	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr15	28200408	rs7170989	T	C	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=1.592;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:28,41:0.59:69
chr15	28211758	rs4778218	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.163;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr15	28211921	rs1800411	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.469;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr15	28228644	rs12910433	G	A	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.688;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:73,28:0.28:101
chr15	28230097	rs1900758	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	28230318	rs1800407	C	T	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:84,147:0.64:231
chr15	28231793	rs10852218	T	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,38:0.35:110
chr15	28235773	rs1800404	C	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr15	28356859	rs1129038	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr15	28357230	rs4778245	T	C	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	28359744	rs7495441	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	28360081	rs7497014	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	28360888	rs5811542	C	CT	1301.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	28361764	rs4778247	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	28362459	rs7495875	G	A	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	28375872	rs6416603	A	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	28377196	rs10627923	C	CCT	1744.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	28377772	rs8025035	C	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	28378122	rs4778141	T	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	28412872	rs61756152	G	A	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=2.063;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:49,87:0.64:136
chr15	28414665	rs7494786	T	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	28437061	rs72714143	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr15	28441817	rs2525936	G	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr15	28473275	.	T	TA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=5.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.153;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr15	28478799	rs72714147	G	A	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.174;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.462;QD=15.13;ReadPosRankSum=0.376;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:22,45:0.67:67
chr15	28502279	rs11631797	A	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:93,37:0.28:130
chr15	28517436	rs75181529	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.065;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr15	29052021	rs4036877	A	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr15	29347019	rs8040932	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr15	29368221	rs2279498	A	G	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=1.554;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:17,45:0.73:62
chr15	29385149	rs4779760	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	29385204	rs4779761	A	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	29386593	rs8037972	G	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	29390858	rs57100286	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr15	29390915	rs59616706	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr15	29394009	rs73370275	C	T	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:33,98:0.75:131
chr15	29398781	rs3816857	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr15	29399148	rs2306935	G	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr15	29415879	rs58084514	T	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr15	29416812	rs74469041	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr15	29417099	rs12438521	G	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chr15	29418520	rs2256273	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr15	29418573	rs2672680	AT	GC	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr15	29418745	rs968476	G	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr15	29428556	rs8023368	C	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	29444130	rs59230279	GC	G	848.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	29544523	rs11071669	A	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.355;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr15	29544656	rs4583203	T	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.683;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:112,43:0.28:155
chr15	30008856	rs7166878	C	A	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	30008889	rs2229518	G	A	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	30011427	rs11073215	C	T	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	30018553	rs4073316	A	T	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	30064495	rs1383315	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	30069920	rs34542662	AT	A	795.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	30070198	rs1904812	A	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	30248646	rs141195905	C	CA	431.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr15	30336850	rs7173045	G	T	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	30337377	rs10775120	G	C	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr15	30663397	rs199781709	A	AAAC	179.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.19;QD=35.97;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	30664453	rs149526715	C	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.60;QD=23.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	30665280	rs201490160	TCA	T	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=47.41;MQRankSum=-2.133;QD=4.31;ReadPosRankSum=-0.468;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr15	30700159	rs62016504	A	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.661;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=17.726;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-13.687;QD=1.32;ReadPosRankSum=-1.618;SOR=2.154;set=HC	GT:AD:AF:DP	0/1:245,29:0.11:274
chr15	30700168	.	C	CTTG	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.397;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=16.722;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-13.143;QD=1.22;ReadPosRankSum=-0.069;SOR=2.099;set=HC	GT:AD:AF:DP	0/1:242,25:0.09:267
chr15	30700263	rs2564642	T	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	30700278	rs62016505	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	31119861	rs3829484	G	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	31129037	rs11070624	G	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	31197564	rs4779794	G	A	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:39,64:0.62:103
chr15	31203093	rs3794594	C	T	365.03	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr15	31217912	rs57426776	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr15	31218164	rs2959037	T	C	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr15	31220709	rs143970863	T	TTG	265.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.839;QD=9.83;ReadPosRankSum=2.167;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr15	31221493	rs80120912	C	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr15	31221745	rs10152143	C	A	63.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	31229420	rs2955795	T	C	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=9.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.232;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:23,39:0.63:62
chr15	31233220	rs2955792	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr15	31234064	rs6493352	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr15	31235357	rs2293319	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	31244083	rs2955790	T	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr15	31244263	rs2955789	C	T	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr15	31245880	rs1404467	C	T	506.53	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr15	31251333	rs11340006	GA	G	234.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr15	31251366	rs2949573	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr15	31267147	rs1133642	C	T	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr15	31283136	rs3743231	A	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:190,93:0.33:283
chr15	31283844	rs28564430	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr15	31330280	rs2288242	A	G	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	31339151	rs11636121	A	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	31341461	rs10851487	G	A	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	31341516	rs2288241	C	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	31342744	rs1035705	C	T	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	31357138	rs919001	A	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	31359457	rs3784599	T	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	31362352	rs2241493	C	T	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	31368915	rs2241497	C	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr15	31369123	rs4779816	A	G	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	31369223	rs4779817	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	31369258	rs4779818	C	T	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr15	31373727	rs4779504	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr15	31453147	rs75638145	G	A	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-1.196;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:63,90:0.59:153
chr15	31515493	.	CCTGTCGTCTGCTG	C	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.667;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr15	31515494	.	C	T	313	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=3;MGOF=2;MMLQ=22;MQ=60.0;NF=4;NR=2;PP=313;QD=57.9618687579;SC=TCAGTGCGGCCTGTCGTCTGC;SbPval=0.67;Source=Platypus;TC=29;TCF=19;TCR=10;TR=6;WE=31515527;WS=31515484;set=Platypus	GT:AD:AF:DP	0/1:23,6:0.21:29
chr15	31515508	.	TGTC	T	292.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-0.332;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr15	31515512	.	ATGTGGAG	A	284.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-0.513;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr15	31516008	rs1865873	T	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr15	31521505	rs3835087	CGG	C	1495.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.35;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	31746320	rs12102124	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-2.205;QD=5.64;ReadPosRankSum=-0.968;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr15	31776004	rs2338682	C	G	75.80	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr15	31776210	rs199744400	TGGC	T	570.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr15	31779595	rs62004065	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr15	31779838	rs16956777	C	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr15	31862448	rs1459198	C	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr15	32393486	rs201765366	C	CTT	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.003;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=-2.235;SOR=1.626;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr15	32393663	rs28650375	C	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	32450062	rs199927660	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.40;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	32450704	rs201822909	G	A	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.83;MQRankSum=-2.343;QD=5.85;ReadPosRankSum=1.467;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:80,48:0.38:128
chr15	32925419	.	A	T	1696.77	.	AC=2;AF=1.00;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr15	32926076	rs11632524	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	32984196	rs6494593	A	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	33023486	rs12915554	C	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:14,61:0.81:75
chr15	33068888	.	CTT	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.790;QD=1.01;ReadPosRankSum=-1.500;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr15	33191023	rs173224	A	G	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	33200804	rs71424680	CAAA	C	1517.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;QD=26.63;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr15	33202602	rs3812926	A	G	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:17,74:0.81:91
chr15	33218472	rs11382878	G	GA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.074;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.640;QD=1.71;ReadPosRankSum=0.080;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr15	33218589	rs36016183	C	CTCT	560.27	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:1,15:0.94:16
chr15	33357262	rs2306277	A	G	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:18,106:0.85:124
chr15	33358587	.	C	T	1079.94	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:5,44:0.90:49
chr15	33359574	rs11858145	C	A	4616.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:38,188:0.83:226
chr15	33446258	rs28377066	G	A	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.514;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:317,84:0.21:401
chr15	33446311	rs28507600	G	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-2.421;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:263,72:0.21:335
chr15	33446879	rs1399077	G	T	5699.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:31,233:0.88:264
chr15	33446947	rs1399078	A	C	5155.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:35,211:0.86:246
chr15	33757840	rs2596163	G	A	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	33765761	rs2245508	A	G	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	33795710	rs2572204	A	G	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	33822742	rs41279200	G	A	3036.41	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:14,121:0.90:135
chr15	33822969	rs12900227	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.468;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:185,35:0.16:220
chr15	33833213	rs16972012	T	G	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:4,66:0.94:70
chr15	33840304	rs10519827	G	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr15	33840414	rs1435100	A	G	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	33842222	rs1865496	C	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	33855345	rs2304379	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	33872177	rs674155	C	T	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	33873657	rs668570	C	T	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,220:0.99:222
chr15	33876517	rs2643364	A	G	5319.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:43,219:0.84:262
chr15	33876543	rs624954	C	T	6668.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:64,289:0.82:353
chr15	33923237	rs28696769	C	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr15	33925364	rs2291732	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.463;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:162,25:0.13:187
chr15	33926812	rs371947863	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=0.668;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:146,22:0.13:168
chr15	33954652	rs4780144	C	T	13137.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr15	33990250	rs1111611	G	A	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	33990294	rs1390161	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.399;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr15	34015013	rs2293027	G	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-2.566;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:202,37:0.15:239
chr15	34016274	rs6495228	G	A	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:17,65:0.79:82
chr15	34021276	rs7498093	T	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:4,51:0.93:55
chr15	34030865	rs4780171	T	C	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:12,65:0.84:77
chr15	34030887	rs12907197	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.299;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr15	34030904	rs56011633	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.074;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr15	34032225	rs61219904	G	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=6.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.845;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:188,35:0.16:223
chr15	34060740	rs2278317	C	T	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	34064043	rs1429754	T	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	34103272	rs4780181	C	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.762;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:107,21:0.16:128
chr15	34111876	rs150186949	AAAATAAATAAATAAAT	A,AAAATAAATAAATAAATAAAT	7537.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=209;set=Intersection	GT:AF:DP	1/2:0.89,0.10:188
chr15	34112825	rs1036005	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.602;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:245,40:0.14:285
chr15	34112865	rs1036006	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=1.163;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:392,52:0.12:444
chr15	34112906	rs1036007	C	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-1.504;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:432,67:0.13:499
chr15	34113010	rs2288613	C	T	6310.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:42,259:0.86:301
chr15	34113536	rs2288614	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.775;QD=0.36;ReadPosRankSum=-0.235;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:162,23:0.12:185
chr15	34113592	rs2288615	T	G	4718.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:29,198:0.87:227
chr15	34115088	rs8032198	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.037;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr15	34117947	rs200179292	TC	T	655.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.57;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	34117954	rs72715190	A	G	313.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=13.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=0.559;SOR=2.939;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr15	34118994	rs4041449	C	CAG	6865.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr15	34129357	rs7182398	C	T	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	34132875	rs4780184	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.774;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:146,28:0.16:174
chr15	34133130	rs3764232	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.566;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:92,14:0.13:106
chr15	34135826	rs2303868	G	A	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	34136971	rs7181900	T	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	34137292	rs12899715	C	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	34140735	rs2278314	A	G	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	34146783	rs2303308	G	A	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	34146886	rs713201	T	C	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr15	34146922	rs713203	C	T	9004.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr15	34151668	rs7180084	G	C	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	34152777	rs2303310	T	A	10743.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr15	34156284	rs11072759	C	G	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	34156312	rs11072760	T	C	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	34330855	.	A	AGGCGCC	327.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr15	34331113	.	CCCGCCGCCGCCT	C	946.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr15	34331290	rs112609265	C	T	205.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.60;ReadPosRankSum=-0.674;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr15	34380216	rs377063587	TA	T	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.781;QD=1.02;ReadPosRankSum=0.565;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:166,47:0.22:213
chr15	34437863	rs4780222	A	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	34441102	rs6495551	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	34446955	rs77111922	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr15	34517995	rs17236770	T	G	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:23,92:0.80:115
chr15	34520887	.	CTTTTTT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.791;QD=4.34;ReadPosRankSum=1.209;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr15	34521253	rs7167503	A	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=2.478;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr15	34521940	rs8033087	C	A	2868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.35;ReadPosRankSum=1.251;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:20,121:0.86:141
chr15	34527632	.	AT	A	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.65;ReadPosRankSum=-1.905;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr15	34528948	rs4577050	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=2.500;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:174,33:0.16:207
chr15	34529488	rs35994446	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.669;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr15	34537435	rs4371122	C	T	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	34537617	rs74010036	G	A	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:28,126:0.82:154
chr15	34542461	rs117589457	A	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.815;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:202,32:0.14:234
chr15	34543055	rs10851964	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.149;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:83,15:0.15:98
chr15	34543298	rs11382535	G	GA	2620.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:7,125:0.95:132
chr15	34547757	rs11421665	G	GA	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	34551082	rs7164902	G	A	5795.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:49,251:0.84:300
chr15	34610964	rs347867	G	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	34628570	rs347836	C	G	2225.78	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:9,79:0.90:88
chr15	34634324	rs422388	C	G	6691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.06;ReadPosRankSum=2.136;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:57,294:0.84:351
chr15	34635029	rs2615357	G	T	3115.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:16,116:0.88:132
chr15	34635200	rs2169479	C	T	13339.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:100,587:0.85:687
chr15	34635369	rs2169480	A	G	1836.78	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:8,66:0.89:74
chr15	34640054	rs150911418	AAAAAAT	A	3199.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	34640218	rs374230	C	T	32346.77	.	AC=2;AF=1.00;AN=2;DB;DP=1194;set=Intersection	GT:AD:AF:DP	1/1:0,1185:1.00:1185
chr15	34640378	rs430083	T	C	22830.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:0,856:1.00:856
chr15	34640959	rs371061	G	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	34643103	rs347796	A	G	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	34649211	rs2279683	C	A	5244.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:35,224:0.86:259
chr15	34649247	rs2279684	C	G	5317.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:37,235:0.86:272
chr15	34651587	rs4984236	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	34652261	rs72625170	C	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:8,86:0.91:94
chr15	34653914	rs35483472	T	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	34654339	rs10626628	T	TTC,TTCTC	14053.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.404;QD=35.58;ReadPosRankSum=-1.789;SOR=0.654;set=HC	GT:AD:AF:DP	1/2:21,76,298:0.19,0.75:395
chr15	34654718	rs2279686	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.191;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:56,10:0.15:66
chr15	34655092	rs2339434	T	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	34657589	rs4984237	A	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	34673588	rs368554203	G	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.46;MQRankSum=0.842;QD=14.46;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr15	34781807	rs8033870	T	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-1.310;QD=5.32;ReadPosRankSum=0.105;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr15	34781815	rs8028789	C	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-1.123;QD=6.58;ReadPosRankSum=0.269;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr15	34782244	.	T	C	9714.77	.	AC=1;AF=0.500;AN=2;DP=511;set=Intersection	GT:AD:AF:DP	0/1:88,418:0.83:506
chr15	34782508	rs12593353	A	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.797;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.555;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:158,27:0.15:185
chr15	34782792	rs2655313	C	A	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:17,75:0.82:92
chr15	34820345	.	ACC	A	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.53;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	34820351	.	ACCCCACCCC	A	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.53;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	34825132	rs199645647	C	G	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.33;QD=26.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	35045312	rs651724	T	A	8413.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:65,358:0.85:423
chr15	35083508	.	T	TCA	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.245;QD=11.69;ReadPosRankSum=-1.815;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr15	35149008	rs8035240	C	T	8307.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr15	35168056	rs2290321	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	35174666	rs34949352	T	TA	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.393;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:11,35:0.76:46
chr15	35174693	.	A	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.463;QD=1.65;ReadPosRankSum=-1.045;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:98,23:0.19:121
chr15	35185810	.	A	ACG	366.73	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr15	35185812	rs6495722	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr15	35196492	rs12898639	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	35207397	rs2044920	C	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	35230924	rs12594085	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	35230934	rs10701045	A	ATAGT	3082.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	35252767	rs11636350	G	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	35256624	rs9920529	C	G	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	35261649	rs7164169	A	G	20906.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:0,767:1.00:767
chr15	35261952	rs7164070	C	T	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	35664406	rs141638132	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.565;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr15	35674184	rs80019930	T	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=2.235;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr15	35834547	rs1020307	T	C	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr15	36218922	rs6495804	T	A	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	36218926	rs62005169	T	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.68;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	36218930	rs1532477	T	A	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	36218934	rs1532476	T	A	1758.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.936;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.49;ReadPosRankSum=1.530;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr15	36219181	rs145934061	AAAG	A	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=1.502;QD=7.71;ReadPosRankSum=-0.194;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr15	36937405	rs11073191	G	T	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	36937606	rs11073192	A	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	36946153	rs10220771	G	A	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	36946303	rs3784678	C	G	9643.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr15	36946441	rs10220785	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	36949952	rs6495863	T	A	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	36983962	rs7183415	T	C	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.761;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.706;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:431,82:0.16:513
chr15	36989469	rs2381887	G	A	7320.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr15	37026565	rs1037439	A	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	37026600	.	ATT	A,AT	1542.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;QD=26.15;SOR=0.796;set=HC	GT:AD:AF:DP	1/2:0,47,12:0.80,0.20:59
chr15	37110637	rs1194621	T	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	37168502	rs10518914	G	A	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:17,92:0.84:109
chr15	37173119	rs67033548	A	AT	5442.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr15	37173147	rs12909623	T	G	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr15	37173267	rs12903788	G	A	7591.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr15	37184342	rs77635771	G	A	5599.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:38,233:0.86:271
chr15	37187197	rs61146116	A	AT	876.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	37242440	.	G	GA	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.404;QD=2.09;ReadPosRankSum=1.518;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:99,37:0.27:136
chr15	37387971	rs3751544	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.422;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chr15	38230400	.	C	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.726;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.932;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:84,12:0.12:96
chr15	38230565	rs59125264	TG	T	1271.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	38233223	rs1021796	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr15	38233869	rs2937991	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	38258772	rs2959336	A	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	38590722	rs8040553	T	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	38590771	rs8036280	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	38590854	rs8034630	G	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	38614525	rs7182445	G	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	38631840	rs7163339	T	C	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	38631930	rs7180446	C	A	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr15	38632148	rs7181472	A	G	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	38641773	rs61670754	G	GTT	4753.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	38641774	.	A	T	1369	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=15;NR=46;PP=1369;QD=23.0126428286;SC=TAATTAATAGATAGGTAAAGT;SbPval=0.45;Source=Platypus;TC=65;TCF=15;TCR=50;TR=61;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:4,61:0.94:65
chr15	38641774	rs34352434	A	AAAT	4754.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=1.747;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	38641776	.	A	AAATTAGT	2900	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=2;NR=44;PP=2900;QD=20;SC=ATTAATAGATAGGTAAAGTTT;SbPval=0.58;Source=Platypus;TC=47;TCF=2;TCR=45;TR=46;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:1,46:0.98:47
chr15	38641777	.	G	A	1377	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=11;NR=44;PP=1377;QD=25.6685675009;SC=TTAATAGATAGGTAAAGTTTT;SbPval=0.45;Source=Platypus;TC=59;TCF=11;TCR=48;TR=55;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:4,55:0.93:59
chr15	38641777	rs59928364	G	GTA	4372.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.52;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	38643574	rs3751526	T	C	10864.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr15	38856923	rs55699464	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr15	38857631	rs60389828	C	G	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:16,82:0.84:98
chr15	38857736	rs147370061	TC	T	542.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr15	38988760	rs7171233	T	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:4,48:0.92:52
chr15	38988815	rs7165988	C	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:5,76:0.94:81
chr15	38990803	rs12595568	T	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	39876062	rs3830465	C	CAT	314.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr15	39876412	rs7170682	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:93,46:0.33:139
chr15	39879517	rs2664141	C	T	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.189;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chr15	39879717	rs2229364	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr15	39880358	rs2228261	C	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-0.543;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:71,38:0.35:109
chr15	39880822	rs2292305	A	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr15	39882873	rs45607038	C	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr15	39887848	rs3743125	G	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr15	39910052	rs16969386	C	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.232;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:117,44:0.27:161
chr15	39910404	rs12908846	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr15	39910431	rs10152640	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr15	40005793	.	G	GA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.114;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=3.618;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.211;QD=0.34;ReadPosRankSum=0.692;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:90,18:0.17:108
chr15	40030440	rs1906163	G	A	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.096;QD=9.77;ReadPosRankSum=1.289;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr15	40030457	rs34646792	GA	G	324.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr15	40031715	rs8033687	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	40056219	rs34937456	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.720;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr15	40056223	rs62004778	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.785;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr15	40062825	rs1565560	C	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=2.510;QD=7.41;ReadPosRankSum=0.570;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr15	40062838	rs7179838	G	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr15	40062855	rs1565561	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr15	40062884	rs7180846	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr15	40094564	rs17717859	C	T	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	40212031	rs77245879	C	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr15	40226294	rs508281	A	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr15	40226495	rs566792	T	C	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	40231625	rs524240	A	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr15	40248122	rs8030025	G	A	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	40254155	rs510949	A	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	40259504	rs522933	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr15	40259519	rs33911018	C	CT	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.344;QD=6.40;ReadPosRankSum=1.197;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr15	40259848	rs2291627	A	C	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:43,105:0.71:148
chr15	40265799	rs2307105	A	G	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	40269052	rs34298786	G	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:101,69:0.41:170
chr15	40269079	rs77645462	G	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr15	40269102	rs149792847	A	AT	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=11.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.657;SOR=2.073;set=HC	GT:AD:AF:DP	0/1:52,27:0.34:79
chr15	40269126	rs112695691	T	TTTCC	1178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=20.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.79;ReadPosRankSum=-0.353;SOR=0.012;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr15	40270214	rs7174071	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	40282625	rs4144472	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	40284523	rs7178419	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr15	40284802	rs11070241	C	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr15	40285120	rs11633992	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr15	40291140	rs2412457	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	40293036	rs72248603	AAAT	A	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;MQ=60.63;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	40299016	rs2291623	C	T	151.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.90;ReadPosRankSum=1.534;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr15	40300092	rs2279581	T	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	40300214	rs2279580	G	C	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:53,100:0.65:153
chr15	40300443	rs2279579	T	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr15	40313083	rs12916520	G	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	40314967	rs8030856	C	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	40322552	rs2250402	G	T	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	40324481	rs4432245	T	C	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:66,153:0.70:219
chr15	40324837	rs2291621	C	T	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	40327290	rs4594236	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr15	40327301	rs2898985	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr15	40328575	rs7535	G	C	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	40328665	rs8208	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:79,37:0.32:116
chr15	40328973	rs2291620	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr15	40329033	rs2291619	A	G	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	40329480	.	G	GGAAAAAAAAAAAAAA	2210	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5010;HP=15;HapScore=1;MGOF=18;MMLQ=23;MQ=58.54;NF=3;NR=4;PP=2210;QD=316.142857143;SC=TCCTTTTGGGGAAAAAAAAAA;SbPval=0.39;Source=Platypus;TC=9;TCF=5;TCR=4;TR=7;WE=40329488;WS=40329470;set=Platypus	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	40330564	rs7321	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	40330629	rs8041057	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.148;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:91,26:0.22:117
chr15	40330693	rs937215	C	T	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	40453307	rs2277559	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	40457129	rs3214012	A	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	40477831	rs1801376	G	A	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	40488851	rs1047130	G	A	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	40491952	rs2172742	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	40494952	rs2412482	A	T	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	40494960	rs12898804	A	C	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	40500986	rs11630664	C	T	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	40556581	rs1075506	G	A	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr15	40556654	rs1075507	G	A	2669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=0.487;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:82,123:0.60:205
chr15	40556952	rs2277563	AG	CA	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;JOINED;set=Intersection	GT:AD:AF:DP	0/1:27,61:0.69:88
chr15	40558002	rs3743132	A	G	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:51,81:0.61:132
chr15	40558064	rs2412504	A	G	3968.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:102,172:0.63:274
chr15	40558482	rs3743135	A	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:55,82:0.60:137
chr15	40565705	rs936214	G	A	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:194,114:0.37:308
chr15	40573675	rs12440450	G	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-1.115;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr15	40573716	rs4924446	A	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	40582128	.	AAGAGAG	A	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=5.008;MLEAC=1;MLEAF=0.500;MQ=61.57;MQRankSum=-1.401;QD=7.65;ReadPosRankSum=0.104;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr15	40582159	.	AGAGAGAGAGAGT	A	51.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=2.261;QD=0.98;ReadPosRankSum=2.695;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr15	40582169	rs8036867	A	T	452.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=9.657;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=-0.516;QD=7.42;ReadPosRankSum=2.147;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr15	40583093	rs2412506	A	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	40583107	rs117658605	T	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr15	40583458	rs936209	A	G	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	40583876	rs9972418	T	G	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr15	40583937	rs9972407	G	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:118,52:0.31:170
chr15	40584164	rs2290550	C	A	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:51,107:0.68:158
chr15	40587322	rs8025304	C	A	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:177,111:0.39:288
chr15	40589830	rs2305649	G	A	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:55,109:0.66:164
chr15	40590134	rs2229690	G	A	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:28,67:0.71:95
chr15	40590265	rs2305648	C	G	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	40593939	rs2305647	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr15	40595414	rs1869902	G	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	40595565	rs2305645	C	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=5.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-1.211;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr15	40595627	rs1869901	G	A	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=1.316;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:20,42:0.68:62
chr15	40630073	rs78494549	G	A	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	40632302	rs12440659	G	C	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr15	40646520	rs71132169	CT	C	1615.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	40650435	rs139273189	C	T	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=25.22;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	40650455	.	A	ACCG	1277.73	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr15	40655845	rs1898883	C	G	7238.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr15	40655873	rs1898882	G	C	8435.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr15	40655980	rs146107339	C	T	4417.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:87,195:0.69:282
chr15	40660192	rs8040755	C	T	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	40662773	rs3803358	C	T	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	40675155	rs7164132	C	A	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	40675329	rs7164321	A	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	40675443	rs7169404	G	T	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	40675493	rs7169262	C	T	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	40676574	rs143882095	CA	C	75.50	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr15	40681854	rs78604110	C	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	40683702	rs11541642	A	G	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	40683780	rs2289332	G	A	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	40684387	rs10681422	G	GTTT	180.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=25.85;ReadPosRankSum=1.465;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr15	40698197	rs373206450	GCCCCAAGGCCTCCTTCCTGCCTGGT	G	1285.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr15	40699940	rs2289331	T	C	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	40700006	rs3214685	G	GTT	678.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	40703114	rs8033938	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	40703339	rs8034416	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	40703609	rs4924466	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	40705105	rs2289330	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	40708422	rs11070270	A	G	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	40711270	rs2075625	C	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	40712737	rs11790	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	40716253	rs2304645	G	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	40751555	rs3803357	C	A	6647.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr15	40820805	rs7164166	A	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	40824710	rs8029208	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	40827030	rs12916323	C	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	40856989	rs3803354	C	T	7527.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr15	40862191	rs141235042	G	GGTTTTGTTTTGTTTTGTTTT	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	40898643	rs7177192	G	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	40900943	rs35446763	CA	C	107.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=0.000;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr15	40903101	.	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-2.287;QD=3.18;ReadPosRankSum=-0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr15	40903109	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-2.287;QD=3.18;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr15	40903684	rs12911738	A	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	40907698	rs11427985	T	TG	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	40913840	rs2412541	G	T	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	40914177	rs11858113	T	C	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	40914772	rs11855334	C	T	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	40915045	rs8041534	T	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	40915190	rs8040502	A	G	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	40915894	rs11070285	T	C	7395.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr15	40921693	.	CTTTTTTTTTTTTT	C	188.87	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.77;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	40937727	rs6492959	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	40939448	rs8041095	G	A	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	40942715	rs34904135	GT	G	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.175;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr15	40944103	rs3092980	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	40947023	rs10444817	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	40949526	rs2412544	C	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	40998305	rs45592734	T	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	41022010	rs184978188	G	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr15	41028692	rs11856571	C	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr15	41030579	rs34355108	C	CA	535.74	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:4,30:0.88:34
chr15	41030865	rs2304582	C	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	41036448	rs4923884	G	A	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	41047024	rs7169010	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	41060070	.	T	TA	39	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=14;HapScore=2;MGOF=8;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=39;QD=14.3333333333;SC=GGTAAAATCTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=15;TCF=8;TCR=7;TR=3;WE=41060078;WS=41060060;set=Platypus	GT:AD:AF:DP	1/0:12,3:0.20:15
chr15	41063244	rs1866170	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	41065890	rs2289219	C	T	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	41099899	rs142730574	T	TGGGGC	439.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr15	41101124	rs3743033	C	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr15	41101145	rs3743034	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr15	41102015	rs139518738	C	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:81,58:0.42:139
chr15	41104789	rs78854020	A	AAG	148.82	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	41104817	rs35853942	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr15	41104874	rs17657877	G	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.241;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=-0.660;QD=9.96;ReadPosRankSum=0.547;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:39,41:0.51:80
chr15	41105658	rs3736286	G	A	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,72:0.69:104
chr15	41105926	rs690347	T	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	41106485	rs7915	A	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr15	41109371	rs12148058	G	A	69.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.99;ReadPosRankSum=-0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr15	41137332	.	C	CT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.265;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr15	41146581	rs3736287	T	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	41148199	rs659232	C	T	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	41149161	rs690458	G	C	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	41165739	rs1814692	A	C	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	41193274	rs9806730	T	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	41193316	rs9806683	C	T	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	41224124	rs3212278	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr15	41224280	rs3212279	G	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr15	41245676	rs11557249	G	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:59,19:0.24:78
chr15	41246237	rs3033592	A	ATC	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	41276158	rs11855248	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.651;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr15	41297711	.	T	TA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.347;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr15	41313064	rs3214068	C	G	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr15	41315591	rs72527311	A	AAT	2613.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	41319844	rs149600837	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr15	41339481	rs11070320	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	41346092	rs2899010	T	C	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	41350766	rs72522214	TGC	T	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.467;QD=5.57;ReadPosRankSum=0.435;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr15	41350772	rs58264392	T	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=6.739;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.205;QD=9.49;ReadPosRankSum=1.285;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr15	41476101	rs521088	T	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	41476209	rs522063	T	C	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr15	41476465	rs690733	G	A	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.019;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:140,61:0.30:201
chr15	41476875	rs2467297	T	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	41483631	rs11371504	T	TA	2241.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	41483636	rs2412609	C	T	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	41487934	rs28382348	G	C	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr15	41509288	rs7173086	T	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.656;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.247;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr15	41634774	rs78809244	G	A	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr15	41672441	rs11376196	A	AT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.22;ReadPosRankSum=0.807;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr15	41766966	rs167581	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	41797573	rs35233496	T	TG	1752.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr15	41803914	rs2254078	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr15	41805115	rs2253936	G	A	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:41,62:0.60:103
chr15	41805237	rs2305030	C	T	318.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr15	41814172	rs2289740	G	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr15	41815516	rs8027526	G	C	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	41816190	rs2297378	T	G	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,80:0.57:141
chr15	41817367	rs2274858	A	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr15	41819283	rs2297379	G	A	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:56,117:0.68:173
chr15	41819716	rs1200345	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:39,98:0.72:137
chr15	41820200	rs2289741	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:74,25:0.25:99
chr15	41821752	rs1200349	T	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr15	41822025	rs2305031	C	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr15	41822323	rs11632399	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr15	41827243	rs7181115	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	41828459	rs3215915	CT	C	420.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr15	41828571	rs2297383	A	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr15	41851709	rs113721358	A	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	41853840	.	G	GTGCC	167.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-3.586;QD=4.66;ReadPosRankSum=-1.181;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr15	41853841	.	A	ATTTTTCACAGT	167.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.190;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-3.586;QD=4.66;ReadPosRankSum=-1.840;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr15	41853846	.	G	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=7.812;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-4.238;QD=3.26;ReadPosRankSum=-2.353;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:27,3:0.10:30
chr15	41856543	rs11070339	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	41857303	rs2277536	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:51,73:0.59:124
chr15	41860698	rs2289743	C	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr15	41862353	.	GGGTAAGGGGATGGGGATGTGGAGGGAGAGGCAGGTAATGATGAAAGACCTTGGAGCTGACCCCAAATCCTGGGTTTTCCTTTA	G	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.922;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=9.893;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-10.085;QD=2.37;ReadPosRankSum=-3.214;SOR=1.660;set=HC	GT:AD:AF:DP	0/1:199,29:0.13:228
chr15	41865488	rs2246444	C	T	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-0.054;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:91,53:0.37:144
chr15	41865525	rs62001448	G	T	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:183,116:0.39:299
chr15	41988194	.	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.153;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr15	41991315	rs2178004	A	T	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	41991391	rs11285992	CT	C	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.913;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr15	42005772	rs1918313	A	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	42021512	rs17677811	T	C	1829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.414;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:200,108:0.35:308
chr15	42026764	rs1918314	C	T	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	42041712	rs2695163	G	A	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	42046568	rs2695164	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	42059521	rs2605570	A	T	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	42103822	rs1197672	C	T	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:65,94:0.59:159
chr15	42105918	rs1201689	C	G	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:101,161:0.61:262
chr15	42109223	rs1197689	T	C	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,52:0.73:71
chr15	42111745	.	C	CGGG	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.320;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr15	42114414	rs2303517	C	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr15	42115019	rs34055060	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr15	42115426	rs1197688	A	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr15	42120342	rs151053095	A	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr15	42120437	rs13380315	C	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr15	42132896	rs1122884	C	T	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:97,134:0.58:231
chr15	42133885	rs1648837	TG	CA	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	42134097	rs3816533	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,31:0.32:96
chr15	42134301	rs1648835	A	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	42134371	rs1648834	G	C	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	42134523	rs1648833	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	42134652	rs1672464	G	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	42134839	rs1672465	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	42134930	rs1648832	G	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	42135988	rs1672466	C	T	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	42137036	rs3214841	CT	C	161.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr15	42137282	rs1648829	G	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	42137576	rs1648828	C	T	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=2.137;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	42137581	rs1648827	A	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	42138321	rs1197670	A	G	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	42138456	rs1197669	G	A	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:88,185:0.68:273
chr15	42139038	rs890508	G	A	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	42139390	rs3214531	GT	G	792.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	42139642	rs883329	C	T	2957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.135;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:325,164:0.34:489
chr15	42143118	rs78489122	T	C	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.587;QD=4.73;ReadPosRankSum=0.413;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:218,86:0.28:304
chr15	42143145	rs58422701	C	CCA	3111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=5.419;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.495;QD=9.13;ReadPosRankSum=-1.590;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:241,100:0.29:341
chr15	42143227	rs2054151	T	C	4183.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:100,190:0.66:290
chr15	42143533	rs1197665	T	G	4552.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	42143597	rs890507	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr15	42144332	rs1197662	T	C	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr15	42144979	rs1197661	C	G	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=16.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-2.357;SOR=1.989;set=HC	GT:AD:AF:DP	0/1:61,37:0.38:98
chr15	42145936	rs1197660	G	C	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr15	42147206	rs1648826	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	42147639	rs2305655	A	C	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	42147663	rs1672467	G	C	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	42147893	rs56199567	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr15	42148550	rs28495273	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr15	42148800	rs56230030	C	T	2339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=-0.339;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:46,111:0.71:157
chr15	42149472	rs1456235	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr15	42149506	rs12442525	G	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,21:0.27:77
chr15	42149596	rs1197675	C	G	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:47,102:0.68:149
chr15	42149952	rs1197674	T	C	394.74	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr15	42150888	rs890503	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:41,98:0.71:139
chr15	42153085	rs2278964	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr15	42154738	rs16972193	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr15	42155841	rs1648841	T	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-1.349;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr15	42156321	rs1197657	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	42159110	rs3816534	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr15	42159290	rs2290553	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr15	42159623	rs8032462	T	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	42166475	rs12593435	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr15	42166500	rs12593397	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.130;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr15	42168400	rs2290559	C	T	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:46,107:0.70:153
chr15	42170499	rs1201690	T	G	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-0.193;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr15	42170506	rs747780	C	T	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.172;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr15	42171462	rs12708402	C	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr15	42171537	rs1197683	A	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	42171800	rs2271283	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr15	42171877	rs1197685	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	42175104	rs1197691	G	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr15	42175507	rs1197692	T	C	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr15	42178155	rs1210795	T	C	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr15	42182442	rs12905012	T	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr15	42185439	rs1672459	C	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,38:0.45:85
chr15	42187492	rs1197701	T	C	4615.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:120,208:0.63:328
chr15	42187661	rs1704380	T	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	42211486	rs1704396	A	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:46,72:0.61:118
chr15	42235173	rs11631075	G	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	42279598	rs28438985	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr15	42287578	rs1668586	G	A	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	42289522	rs1704357	C	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	42292532	rs1668557	T	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	42297092	rs2598464	G	A	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	42298133	rs1704366	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	42302590	rs1668568	A	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	42305769	rs75965569	GC	AT	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.26;ReadPosRankSum=-1.758;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr15	42305773	rs62004282	A	G	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.87;ReadPosRankSum=-2.258;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr15	42305852	rs10625152	A	AGAG	1674.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr15	42305998	rs1668565	T	C	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=2.281;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:26,28:0.52:54
chr15	42306015	rs1668564	G	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr15	42311454	rs2724935	T	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr15	42362821	rs2459692	C	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	42363769	rs1668589	A	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr15	42364652	rs1668587	G	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	42373432	rs600415	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr15	42374601	rs138949725	A	ATCAT	2159.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr15	42377744	rs605253	C	G	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.921;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:33,54:0.62:87
chr15	42433802	rs2280248	A	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	42434254	rs655427	G	A	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-2.017;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:41,36:0.47:77
chr15	42434505	rs654527	C	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr15	42434837	rs1356410	T	C	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	42436043	rs681264	G	A	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	42436069	rs77217281	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr15	42438508	rs116962748	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr15	42439376	rs4923929	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=0.455;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr15	42440069	rs78451061	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr15	42442186	rs60486546	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr15	42442422	rs60506946	T	G	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.512;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:137,51:0.27:188
chr15	42442741	rs73403545	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:75,29:0.28:104
chr15	42442823	rs73403546	G	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr15	42442999	rs78230130	G	T	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr15	42445554	rs10220859	G	T	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.184;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:85,44:0.34:129
chr15	42445654	rs1703754	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr15	42445679	rs681029	T	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr15	42445724	rs624841	C	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr15	42445987	rs1624183	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr15	42446208	rs678778	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr15	42447632	rs147272656	ACT	A	1803.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr15	42452874	.	G	A	784.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr15	42452942	.	G	C	1923.77	.	AC=1;AF=0.500;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	0/1:68,87:0.56:155
chr15	42452993	.	G	A	2600.77	.	AC=1;AF=0.500;AN=2;DP=223;set=Intersection	GT:AD:AF:DP	0/1:101,121:0.55:222
chr15	42453851	rs148082104	GA	G	4994.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:19,141:0.88:160
chr15	42459034	rs1619030	T	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-2.561;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:298,54:0.15:352
chr15	42481170	.	AAAAT	A	54	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=6;HapScore=2;MGOF=2;MMLQ=23;MQ=60.0;NF=2;NR=0;PP=54;QD=35.0;SC=TCTCAGGAAAAAAATAAATAA;SbPval=1.0;Source=Platypus;TC=14;TCF=8;TCR=6;TR=2;WE=42481181;WS=42481160;set=Platypus	GT:AD:AF:DP	0/1:12,2:0.14:14
chr15	42491708	rs73407403	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr15	42519136	rs1678988	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	42520760	rs1678987	C	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	42520829	rs1712417	T	C	8652.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr15	42523341	rs56119841	T	TC	8973.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	42524065	rs1630294	T	C	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	42524165	rs1712420	C	T	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	42528676	rs1679012	C	T	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:26,135:0.84:161
chr15	42529892	rs66512609	C	CT	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.414;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr15	42531768	rs11070363	C	T	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	42553218	rs5812215	AT	A	2524.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.70;ReadPosRankSum=0.122;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:1,84:0.99:85
chr15	42560312	rs2412681	C	T	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	42564369	rs4244587	C	T	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=-0.921;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:14,58:0.81:72
chr15	42564369	.	CA	TG	600	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=21;MQ=60.0;NF=26;NR=20;PP=600;QD=14.2058233666;SC=CTTCAATTACCAAAGCATCAT;SbPval=0.57;Source=Platypus;TC=59;TCF=33;TCR=26;TR=46;WE=42564378;WS=42564359;set=Platypus	GT:AD:AF:DP	0/1:13,46:0.78:59
chr15	42564370	rs4244588	A	G	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.25;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	42564902	rs7181758	A	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	42568547	rs8043515	C	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	42568630	rs8023678	G	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	42570105	rs12916792	G	C	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=19.13;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	42570113	.	GAAAA	G	181.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.765;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.140;QD=20.19;ReadPosRankSum=0.589;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr15	42570201	rs12916523	A	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	42570433	rs8024390	C	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	42570718	rs8024732	A	G	8321.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:105,374:0.78:479
chr15	42573067	rs8037020	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr15	42575963	rs2412689	A	G	10461.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr15	42579822	rs11070371	T	C	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	42579948	rs8037627	T	C	10627.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr15	42579984	rs16973008	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.194;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=1.247;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:411,56:0.12:467
chr15	42580106	rs8036596	A	C	2238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=6.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.12;ReadPosRankSum=0.527;SOR=0.182;set=HC	GT:AD:AF:DP	0/1:20,86:0.81:106
chr15	42584909	rs4923939	C	T	9578.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr15	42589987	rs4924651	T	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=41.76;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	42589996	rs4924652	C	T	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=44.68;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	42590034	rs72029141	TATTCATTC	T	350.74	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	42603083	rs2412694	C	T	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	42606094	rs7173358	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	42606153	rs141877658	A	AAACAACAACAAC,AAACAACAACAACAAC	2479.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=55;set=Intersection	GT:AF:DP	1/2:0.85,0.15:46
chr15	42606161	rs11637731	G	A	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	42619508	rs1659215	C	T	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr15	42622968	rs71108160	CTT	C	283.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.932;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.69;ReadPosRankSum=-2.029;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:3,14:0.82:17
chr15	42641755	rs71823989	CTCAAA	C	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.040;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr15	42643529	rs7181742	T	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=5.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.259;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:117,13:0.10:130
chr15	42643538	rs7180279	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.136;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:132,16:0.11:148
chr15	42644105	rs3743008	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.177;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.834;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr15	42694944	rs2241827	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=1.552;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:92,13:0.12:105
chr15	42695875	rs17764849	C	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.936;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr15	42696158	rs7163986	A	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.176;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.440;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr15	42696238	rs111814065	C	CAGAG	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.245;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:62,13:0.17:75
chr15	42703886	rs72093530	CGG	C	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.79;ReadPosRankSum=1.004;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	42704105	rs3098423	C	T	7104.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr15	42709998	rs62022300	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.009;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:92,23:0.20:115
chr15	42710177	rs17708630	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.841;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:91,16:0.15:107
chr15	42713462	rs62022303	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=1.896;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr15	42720288	rs11544099	G	C	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.532;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:174,43:0.20:217
chr15	42744094	rs12440118	A	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.178;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:251,47:0.16:298
chr15	42749476	rs62022313	C	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.752;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:87,20:0.19:107
chr15	42758159	rs2244773	T	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	42764519	rs7177521	G	C	8536.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	42805000	rs4573906	G	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr15	42820451	rs9302112	C	T	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:13,83:0.86:96
chr15	42850380	rs3986280	A	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr15	42850528	.	T	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=5.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.30;ReadPosRankSum=1.101;SOR=2.048;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr15	42851464	rs11070374	C	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr15	42851471	.	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.755;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr15	42927182	rs17767439	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr15	42930891	rs1197550	A	T	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr15	42954888	rs7166373	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr15	42955967	rs938047	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:106,37:0.26:143
chr15	42957373	rs8039765	C	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.518;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:73,16:0.18:89
chr15	42957532	rs8024902	T	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.047;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr15	42966288	rs35738819	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr15	42977526	rs6493059	A	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:117,67:0.36:184
chr15	42977676	rs6493060	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:169,124:0.42:293
chr15	42981022	rs28744617	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:99,68:0.41:167
chr15	42981806	rs8030587	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:58,20:0.26:78
chr15	42982340	rs8031218	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr15	42983923	rs3742993	A	G	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:150,58:0.28:208
chr15	43017426	rs16957091	T	G	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.007;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:123,48:0.28:171
chr15	43017919	rs6493062	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr15	43018486	rs2305085	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr15	43018691	rs2305084	T	G	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=1.369;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr15	43020983	rs8023524	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.180;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:104,34:0.25:138
chr15	43021563	rs12905385	G	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:109,51:0.32:160
chr15	43021628	rs16957104	C	T	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.931;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-2.969;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:77,36:0.32:113
chr15	43022690	rs7174041	C	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr15	43023482	rs12917189	T	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr15	43024063	rs12917018	C	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr15	43025174	rs8027427	T	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.750;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.360;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr15	43025209	rs11448523	A	AG	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-1.091;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr15	43025476	rs34650750	C	CT	761.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.112;QD=5.40;ReadPosRankSum=-0.475;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:83,58:0.41:141
chr15	43025524	rs28549876	T	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:54,15:0.22:69
chr15	43028592	rs7167392	G	A	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr15	43028749	rs4265781	T	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr15	43075531	rs9920092	C	T	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr15	43086737	rs16957167	G	T	458.28	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr15	43090520	rs16957168	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.101;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr15	43109127	.	CAT	C	263	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=23;MQ=60.6;NF=4;NR=3;PP=263;QD=38.8571428571;SC=AACAAATATACATATATATAT;SbPval=0.21;Source=Platypus;TC=13;TCF=10;TCR=3;TR=7;WE=43109136;WS=43109117;set=Platypus	GT:AD:AF:DP	1/0:6,7:0.54:13
chr15	43109140	rs66534174	AT	A	473.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=9.332;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.919;QD=23.69;ReadPosRankSum=-0.734;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr15	43109142	rs66947001	AT	A	473.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.967;QD=18.95;ReadPosRankSum=0.291;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr15	43109385	rs7182753	C	T	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	43170690	rs10650948	T	TAC	409.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr15	43170793	rs6493068	A	G	6076.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.152;QD=34.92;ReadPosRankSum=1.488;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:1,173:0.99:174
chr15	43170823	rs16957250	C	T	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.787;QD=12.70;ReadPosRankSum=0.110;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:58,97:0.63:155
chr15	43330175	rs7166596	A	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	43378118	.	CA	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.303;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:58,27:0.32:85
chr15	43498479	rs147713872	ATG	A	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=1.005;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:222,24:0.10:246
chr15	43512847	rs3832982	AC	A	2455.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.95;ReadPosRankSum=0.341;SOR=4.824;set=HC	GT:AD:AF:DP	1/1:8,99:0.93:107
chr15	43527236	rs579178	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr15	43531411	rs28756768	G	C	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:6,241:0.98:247
chr15	43568999	rs530683	C	T	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	43584370	rs117942086	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.994;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=6.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.592;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr15	43720155	.	CA	C	213.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.542;QD=3.06;ReadPosRankSum=-0.993;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr15	43748556	rs28903075	A	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=1.087;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:440,69:0.14:509
chr15	43784000	rs555252	C	T	8251.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	43819244	rs202116613	C	G	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=7.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.442;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:195,38:0.16:233
chr15	43903129	rs56385906	A	G	2322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.146;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=7.517;MLEAC=1;MLEAF=0.500;MQ=51.34;MQRankSum=-0.513;QD=14.61;ReadPosRankSum=-0.996;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:60,99:0.62:159
chr15	43903198	.	TTG	T	612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-5.093;QD=4.47;ReadPosRankSum=-2.498;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:99,38:0.28:137
chr15	43927623	rs375933133	CA	C	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=4.482;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.092;QD=0.91;ReadPosRankSum=-0.235;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:436,115:0.21:551
chr15	43941125	rs2470122	G	C	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	43988696	rs2411268	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-0.566;QD=13.40;ReadPosRankSum=-0.566;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	43988709	rs3866939	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	44028569	rs56181031	G	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.40;QD=31.05;SOR=3.113;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	44038899	rs2411284	C	T	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=26.60;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr15	44053617	rs8040336	C	T	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	44061802	rs1053492	C	T	9606.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr15	44062874	rs7181912	A	T	1604.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.93;ReadPosRankSum=-0.646;SOR=0.502;set=HC	GT:AD:AF:DP	1/1:4,66:0.94:70
chr15	44068160	rs3844075	C	G	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	44084705	rs4644832	G	A	16549.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr15	44090854	rs654276	T	C	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	44091351	rs656473	A	T	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	44093970	rs200501830	A	G	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:20,141:0.88:161
chr15	44107382	.	G	GT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=15.199;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.112;QD=2.54;ReadPosRankSum=-0.263;SOR=0.021;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr15	44120559	rs678084	T	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr15	44599410	rs199591388	CT	C	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.894;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:70,40:0.36:110
chr15	44778936	rs2453275	T	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:11,63:0.85:74
chr15	44792032	rs79808511	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr15	44855292	rs375706902	C	G	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:43,212:0.83:255
chr15	44859547	.	C	CA	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=5.389;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.678;QD=3.44;ReadPosRankSum=-1.599;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr15	44903285	rs12909507	C	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.90;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	44951174	rs7165146	A	G	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:13,76:0.85:89
chr15	44966389	rs8026845	T	C	8219.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr15	45028919	rs11388295	C	CT	1717.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:43,99:0.70:142
chr15	45047134	rs2470911	G	A	15600.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr15	45047573	rs3100139	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	45048757	rs3759881	T	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	45059390	rs6493127	C	T	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	45060014	rs3100143	A	T	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	45123909	.	TA	T	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=51.63;MQRankSum=-5.780;QD=2.67;ReadPosRankSum=0.484;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr15	45250515	rs11633942	G	T	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.825;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-1.330;QD=34.88;ReadPosRankSum=1.338;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:6,36:0.86:42
chr15	45250518	rs11633824	A	G	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.528;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-1.330;QD=34.88;ReadPosRankSum=1.448;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:6,36:0.86:42
chr15	45250755	rs373082	CA	TG	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	45353230	rs2854446	C	T	10402.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr15	45357410	rs2854437	T	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	45361011	rs28662287	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.20;QD=28.90;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	45361046	.	AT	A	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-2.469;QD=11.17;ReadPosRankSum=0.029;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:6,33:0.85:39
chr15	45364534	rs930337	A	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	45364706	rs71114308	TG	T	281.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.89;QD=25.61;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	45387550	rs199138	A	G	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	45388382	rs2554451	C	T	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	45391566	rs269869	A	T	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	45392075	rs269868	G	A	6869.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	45394007	rs112428007	T	C	26850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=1368;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=-1.063;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:206,1154:0.85:1360
chr15	45398965	rs269862	G	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr15	45399467	rs190599	A	G	31457.77	.	AC=2;AF=1.00;AN=2;DB;DP=1157;set=Intersection	GT:AD:AF:DP	1/1:1,1146:1.00:1147
chr15	45400164	rs269861	T	C	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	45400358	rs269860	C	G	11570.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr15	45404066	rs2001616	G	A	11556.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr15	45404979	rs182090	T	G	9875.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr15	45405463	rs269856	G	T	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr15	45408414	rs2576090	C	G	8080.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr15	45408691	rs2576091	C	G	12810.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.75;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr15	45408699	rs2252371	C	T	13369.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr15	45408710	rs2554459	A	G	8967.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr15	45408933	rs2576092	T	C	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	45409271	rs955152	C	T	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr15	45424286	rs1706810	C	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:7,77:0.92:84
chr15	45433646	rs1648283	T	G	8726.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:63,392:0.86:455
chr15	45435603	rs117618181	T	C	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr15	45439910	rs938129	A	G	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	45442767	rs141856935	T	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.098;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:47,9:0.16:56
chr15	45444518	rs1706804	A	G	18406.77	.	AC=1;AF=0.500;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	0/1:166,810:0.83:976
chr15	45445499	rs1648304	G	C	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:16,96:0.86:112
chr15	45445691	.	AATGTGTGTGTGTGT	AGTGTGTGTGTGT,A	5446.77	.	AC=1,0;AF=0.500,0.00;AN=2;DP=208;set=Intersection	GT:AF:DP	0/1:0.91:202
chr15	45445692	.	ATGTGTGTGTGTGTGTG	GTGTGTGTGTGTGTGTG	658	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=18;MQ=59.94;NF=2,69;NR=48,63;PP=658,607;QD=13.22;SC=GTAAGTGCGAATGTGTGTGTG;SbPval=0.24;Source=Platypus;TC=106;TCF=2;TCR=104;TR=50,132;WE=45445720;WS=45445681;set=Platypus	GT:AD:AF:DP	0/1:81,132:0.62:213
chr15	45445692	.	ATGTGTGTGTGTGTGTG	A	658	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=18;MQ=59.94;NF=2,69;NR=48,63;PP=658,607;QD=13.22;SC=GTAAGTGCGAATGTGTGTGTG;SbPval=0.24;Source=Platypus;TC=106;TCF=2;TCR=104;TR=50,132;WE=45445720;WS=45445681;set=Platypus	GT:AD:AF:DP	0/1:56,50:0.47:106
chr15	45445732	.	GTGTGTGTGTGTGTA	G	196.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=7.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.195;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr15	45445734	.	GTGTGTGTGTGTA	G	843.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=3.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-1.616;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:44,43:0.49:87
chr15	45445746	.	A	G	707	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=1;MGOF=142;MMLQ=25;MQ=60.0;NF=11;NR=55;PP=707;QD=11.2389577659;SC=GTGTGTGTGTATAATGGGGAG;SbPval=0.76;Source=Platypus;TC=78;TCF=16;TCR=62;TR=66;WE=45445754;WS=45445736;set=Platypus	GT:AD:AF:DP	0/1:12,66:0.85:78
chr15	45446084	rs11306605	CA	C	994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.205;QD=9.95;ReadPosRankSum=0.622;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:25,75:0.75:100
chr15	45446156	rs2458236	C	T	4799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=3.150;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-2.890;QD=18.46;ReadPosRankSum=1.163;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:38,222:0.85:260
chr15	45454720	rs1706811	G	A	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.48;ReadPosRankSum=-0.329;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:17,90:0.84:107
chr15	45457106	rs12438755	G	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-0.160;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:282,38:0.12:320
chr15	45457127	rs7169193	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.13;ReadPosRankSum=-1.352;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:225,29:0.11:254
chr15	45467540	rs1632144	C	G	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	45491082	rs80131405	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-2.040;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:277,49:0.15:326
chr15	45544319	rs2899376	T	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	45545378	rs17215668	GC	G	1864.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:9,59:0.87:68
chr15	45545478	rs11854484	C	T	3899.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:25,166:0.87:191
chr15	45554267	rs1060896	C	A	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:28,284:0.91:312
chr15	45556829	rs11631021	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:5,59:0.92:64
chr15	45557456	rs11632419	C	A	3284.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:24,130:0.84:154
chr15	45557468	rs2271438	A	G	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:21,122:0.85:143
chr15	45561868	rs2413769	C	A	815.74	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:3,30:0.91:33
chr15	45567529	rs12440356	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=3.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-1.336;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:257,46:0.15:303
chr15	45694516	rs1346266	G	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-0.216;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:55,8:0.13:63
chr15	45694579	rs1820518	C	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.258;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:125,24:0.16:149
chr15	45694610	rs1365610	C	T	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.015;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:165,33:0.17:198
chr15	45695695	rs1153849	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.680;QD=0.31;ReadPosRankSum=0.129;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:357,50:0.12:407
chr15	45695830	rs3833012	GT	G	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.742;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.645;QD=1.44;ReadPosRankSum=-0.590;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:131,20:0.13:151
chr15	45707693	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.316;QD=3.25;ReadPosRankSum=0.887;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr15	45777344	rs1153829	T	C	3842.18	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:17,161:0.90:178
chr15	45779810	rs2453531	G	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	45894485	.	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.810;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr15	45951409	rs55658411	A	T	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.80;ReadPosRankSum=1.358;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr15	45951413	rs56364627	T	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=2.625;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr15	45966101	rs16946821	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr15	45968535	rs12914266	A	C	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	47873477	rs4775698	T	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr15	47873549	rs4775699	C	T	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=0.489;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr15	47873605	rs4774498	T	A	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=2.211;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,32:0.80:40
chr15	48053730	rs9920019	A	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr15	48058071	rs532598	G	A	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr15	48058484	rs528882	G	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr15	48059137	rs11353659	CT	C	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr15	48063076	rs568215	T	C	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:46,74:0.62:120
chr15	48443699	rs2470103	T	C	6404.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	48450517	rs3736482	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	48460786	rs11070626	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	48460927	rs8023906	C	T	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr15	48520699	rs1484547	T	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	48529390	rs11852323	A	G	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr15	48538979	rs35669481	A	AAAC	1020.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	48539026	rs11636073	A	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr15	48539043	rs8028035	G	A	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	48539587	rs6493311	T	C	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.490;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:69,54:0.44:123
chr15	48541700	rs2279365	G	A	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:70,111:0.61:181
chr15	48547976	rs2291340	T	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,35:0.34:104
chr15	48561834	rs1484551	A	G	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	48580573	rs12442530	A	T	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr15	48580713	rs1552311	T	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	48584083	rs2291342	A	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr15	48591267	rs35405890	C	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.912;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr15	48623248	rs66822811	TCGGGCGCGGTGTCTTGCCCACAGCTTGGGGAGCGGCCC	T	244.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	48623524	rs12592157	C	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.296;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr15	48712699	rs3214528	AT	A	598.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	48713996	rs1820488	G	T	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	48720526	rs363832	G	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	48729648	rs2042746	T	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	48736684	rs2303502	A	T	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	48749040	rs6145556	C	CGTGT,CGT	771.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/1:1.00:18
chr15	48764655	.	TAAA	T,TAA	664.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.832;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;MQRankSum=0.408;QD=17.49;ReadPosRankSum=0.359;SOR=0.916;set=HC	GT:AD:AF:DP	1/2:4,15,19:0.39,0.50:38
chr15	48807637	rs4775765	C	T	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	48903126	rs1018148	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	49044538	rs2306187	C	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr15	49074539	rs2289179	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr15	49083577	rs58156069	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr15	49097734	rs72739872	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.72;ReadPosRankSum=0.366;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr15	49098016	rs1426200	C	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.41;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	49098016	.	CGAAAAT	AGAAAAC,AGAAAAT	116	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=1;MMLQ=28;MQ=60.0;NF=0,1;NR=7,16;PP=116,82;QD=24.2096964089;SC=GGTGATTCACCGAAAATAGCT;SbPval=1.0;Source=Platypus;TC=17;TCF=1;TCR=16;TR=7,17;WE=49098030;WS=49098006;set=Platypus	GT:AF:DP	0/1:0.41:17
chr15	49098022	rs62009409	T	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.334;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.80;ReadPosRankSum=0.967;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	49118087	rs3743292	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr15	49135892	rs882824	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr15	49143232	rs17467239	G	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.086;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=14.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.437;SOR=0.043;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr15	49148356	rs16961733	C	A	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr15	49149828	rs4774526	C	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	49168649	rs34156861	TAC	T	115.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	49168841	rs34224664	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.304;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr15	49285001	rs34895054	G	C	2249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.899;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:62,108:0.64:170
chr15	49311651	rs192860722	A	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.219;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:70,26:0.27:96
chr15	49320270	rs76487480	T	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr15	49325289	rs11638215	A	C	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr15	49422885	rs2289389	T	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr15	49493250	.	AGT	A	286.73	.	AC=1;AF=0.500;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.89;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr15	49620971	rs5812480	AT	A	400.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;QD=16.70;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	49663405	rs12903238	G	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	49800394	rs58845336	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr15	49867122	rs12901416	A	G	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	49867148	rs12902794	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	49867323	rs12902107	G	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	49869141	rs12912703	C	G	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr15	49923026	rs1976551	C	G	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr15	50152274	rs4494483	T	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.546;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr15	50152583	rs4774549	G	T	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	50158695	rs11630021	C	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:96,52:0.35:148
chr15	50189303	rs2413975	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	50189448	rs2413976	C	A	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=1.341;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	50193553	rs2009833	G	A	263.89	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr15	50226313	rs2452524	G	T	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-0.262;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:69,36:0.34:105
chr15	50254280	rs12442430	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr15	50289094	rs72734852	C	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr15	50303318	rs72734857	G	T	101.88	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr15	50311135	rs12591825	C	A	3700.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:107,169:0.61:276
chr15	50311148	rs11070741	A	G	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:103,160:0.61:263
chr15	50366486	rs77018215	G	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr15	50474766	rs1648348	A	C	2010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=11.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=-3.493;SOR=1.626;set=HC	GT:AD:AF:DP	0/1:56,86:0.61:142
chr15	50474900	rs34490804	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:158,75:0.32:233
chr15	50489677	rs1863511	A	T	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	50497354	rs2278166	G	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr15	50518146	rs8043431	A	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr15	50521265	rs5812509	T	TA	5202.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	50526030	rs16963464	T	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr15	50526249	rs17848313	A	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr15	50546933	rs367785479	TTTTC	T	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.052;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr15	50550405	rs184770443	G	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr15	50555544	rs17740607	G	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=1.741;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:78,38:0.33:116
chr15	50555710	rs854160	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	50557738	rs854163	G	A	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,74:0.68:109
chr15	50754339	rs3098169	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr15	50773755	rs3131561	G	A	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	50776525	rs10220843	T	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr15	50781963	rs3098176	T	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-1.529;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr15	50782335	rs2289108	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr15	50786024	rs16963739	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr15	50787871	rs16963744	T	G	44.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.20;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	50787955	rs17645290	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.44;ReadPosRankSum=1.552;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr15	50787955	.	TCT	CCC	150	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=23;MQ=60.0;NF=4;NR=2;PP=150;QD=33.911312477;SC=TGTTTCTAAATCTGGCAAGTG;SbPval=0.4;Source=Platypus;TC=9;TCF=7;TCR=2;TR=6;WE=50787965;WS=50787945;set=Platypus	GT:AD:AF:DP	1/0:3,6:0.67:9
chr15	50787957	rs72738980	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.44;ReadPosRankSum=1.353;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr15	50792874	rs3803373	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr15	50821945	rs3098200	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr15	50830876	rs72740407	A	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr15	50833113	rs2003359	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr15	50836243	rs3109878	T	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	50867082	rs473357	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr15	50867142	rs16963774	C	T	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:57,102:0.64:159
chr15	50867441	rs16963775	G	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr15	50873121	rs147578012	A	AAC	1710.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chr15	50878478	rs539383	G	A	240.22	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr15	50882044	rs200417073	T	TTTTTTTTG	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.27;ReadPosRankSum=0.303;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	50884090	rs78432285	C	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr15	50885976	rs567109	G	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr15	50888619	rs675011	A	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	50899309	rs11633404	C	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr15	50901929	rs35281039	TA	T	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=5.587;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=2.010;QD=7.80;ReadPosRankSum=0.409;SOR=0.262;set=HC	GT:AD:AF:DP	0/1:29,42:0.59:71
chr15	50903600	rs4775894	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr15	50906498	rs2163098	C	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr15	50920509	.	C	CTTTTT,CT	34.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	0/1:0.33:6
chr15	50941108	rs2063011	C	G	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr15	51024991	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.27;ReadPosRankSum=-0.325;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr15	51204364	rs1147129	G	A	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	51204394	rs3214932	C	CT	4307.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	51207818	rs2663553	G	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	51350655	rs76241791	AT	A	629.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr15	51502844	rs4646	A	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.529;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:105,41:0.28:146
chr15	51502986	rs10046	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-2.846;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:119,32:0.21:151
chr15	51503881	rs28757202	T	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=1.957;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr15	51503897	rs28757201	G	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.014;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr15	51504061	rs28757200	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.35;ReadPosRankSum=-0.366;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr15	51504811	rs1065779	A	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr15	51507508	rs2289105	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr15	51507782	rs2289106	T	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr15	51510702	rs1143704	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.300;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.345;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr15	51510868	rs4324076	A	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:79,42:0.35:121
chr15	51514698	rs76174961	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr15	51519945	rs28892005	A	AAAG	535.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=3.995;QD=7.05;ReadPosRankSum=-1.566;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr15	51634255	rs2446421	T	G	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:54,84:0.61:138
chr15	51675625	rs2445738	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr15	51689624	rs1147142	A	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.28;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	51748610	rs3736485	A	G	32.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.93;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr15	51749726	rs930920	A	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr15	51751091	rs111734926	TAGCAGC	T	1452.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	51758345	rs10706765	CA	C	186.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=18.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	51770456	rs11291027	AT	A	431.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	51780722	rs17524750	C	T	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	51790677	rs117042600	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr15	51829812	rs17524906	G	A	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	51829995	rs12904173	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.685;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	51981597	.	GGT	G	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=5.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.281;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr15	52005713	rs2305720	C	T	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	52029406	rs2606128	G	A	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	52069228	rs3078875	GCAATCT	G	4145.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	52073380	rs369170523	T	C	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.130;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:129,50:0.28:179
chr15	52185961	rs11370809	C	CA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=7.568;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.493;QD=2.34;ReadPosRankSum=-0.618;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	52264094	rs17612102	T	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	52401933	rs2231297	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr15	52401951	rs2227308	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr15	52404862	rs2231292	A	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr15	52404934	rs4776003	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.683;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr15	52405008	rs139441006	GCCCCGGC	G	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.27;ReadPosRankSum=-0.398;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	52420491	rs12909161	G	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,52:0.72:72
chr15	52486335	rs59434591	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr15	52487523	rs3751604	T	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.871;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr15	52504142	rs2278295	T	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr15	52505563	rs3751608	C	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.557;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr15	52506655	rs6493546	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=1.497;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr15	52506937	rs34638854	A	AT	102.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.56;ReadPosRankSum=0.429;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr15	52510669	rs3751609	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr15	52515678	rs4405492	G	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=2.447;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr15	52517737	rs11070887	A	C	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:91,122:0.57:213
chr15	52521529	rs3838857	AAAT	A	1104.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr15	52531941	rs11635028	A	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.874;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:122,41:0.25:163
chr15	52534344	rs3751631	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,31:0.35:89
chr15	52539673	rs10163109	C	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	52548759	.	A	AACACAC,AACAC	60	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.4998,0.5002;HP=1;HapScore=2;MGOF=37;MMLQ=20;MQ=56.02;NF=5,5;NR=1,1;PP=27,60;QD=5.16666666667;SC=TCTTTCCACGAACACACACAC;SbPval=0.55;Source=Platypus;TC=8;TCF=7;TCR=1;TR=6,6;WE=52548767;WS=52548749;set=Platypus	GT:AF:DP	0/1:0.75:8
chr15	52548784	.	A	ACGCGCG,ACACGCGCGCG	416.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	1/1:1.00:7
chr15	52553007	rs4497629	C	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	52553068	.	T	C	1871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-0.982;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:40,84:0.68:124
chr15	52556429	rs4776032	A	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	52561891	.	AT	A	673.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.887;QD=6.61;ReadPosRankSum=0.203;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:48,54:0.53:102
chr15	52564191	rs3751629	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	52564913	.	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.125;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:77,30:0.28:107
chr15	52569261	rs16964849	C	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.640;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr15	52571270	.	G	GT	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=3.792;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.225;QD=5.23;ReadPosRankSum=0.475;SOR=1.350;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr15	52575170	rs3751624	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr15	52611451	rs2290332	A	G	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr15	52628489	rs8035295	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr15	52638972	rs12593477	A	T	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	52640990	rs11386962	T	TA	114.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	52641120	rs139493603	T	TAA	107.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr15	52662670	rs2290335	T	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	52664408	rs11637651	G	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-2.075;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr15	52667552	rs2414145	G	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	52667689	rs9282795	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr15	52667735	rs2290336	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr15	52675261	rs4774621	T	C	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	52681377	rs1405184	T	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr15	52681573	rs1724623	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	52684004	rs1669872	C	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	52689526	rs2924130	T	C	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	52689631	rs1724577	T	G	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	52708189	rs1669858	C	T	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	52820904	rs1693513	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.056;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr15	52897478	rs2414163	T	C	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	52901433	rs12915981	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	52901638	rs3751614	T	C	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	52901977	rs2414166	G	A	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	52904046	rs4776063	C	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	53082214	rs149161886	GTC	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-1.207;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr15	53815527	rs139512794	A	AAGAG,AAG	883.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=74;set=Intersection	GT:AF:DP	0/1:0.85:33
chr15	53905729	rs62005937	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	53905779	rs35292476	C	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	53905820	rs34829468	GA	G	965.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr15	53905869	.	G	A	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.390;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr15	53997089	rs578595	C	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	53998314	rs690235	G	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	54003091	rs551225	G	A	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	54005244	rs2459380	T	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	54008795	rs690337	T	C	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	54008845	rs690346	T	C	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr15	54008889	rs34828731	GA	G	5641.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	54008966	rs6145564	A	AGTGCTGCACTTAAGT	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	54304988	rs17633589	T	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr15	54306925	rs12437941	G	A	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	54336662	rs76849034	A	G	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.085;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:28,51:0.65:79
chr15	54529629	rs7162346	T	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=1.766;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr15	54542392	rs149000556	G	A	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr15	54556259	rs12917364	A	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr15	54592355	rs7164993	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	54630552	rs57449290	T	TTGTC	1364.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:77,38:0.33:115
chr15	54630758	rs12913366	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.085;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	54685463	rs489526	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.798;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr15	54792428	rs8025195	A	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-2.583;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr15	54841696	rs10468008	G	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	54841874	rs9302181	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	54847509	rs8039515	G	T	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	54847677	rs11639005	C	T	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	54847786	rs11639014	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	54914716	rs2681964	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	54915975	rs2414332	A	T	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	54918911	rs11856235	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	54918943	rs11852743	G	A	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	54919047	rs1520411	A	G	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	55474552	rs117367525	A	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr15	55484903	rs78560556	G	A	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chr15	55489065	rs9300	G	A	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:46,66:0.59:112
chr15	55489104	rs13733	A	G	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr15	55497691	rs1050931	G	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr15	55611433	rs28668016	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr15	55621889	rs28459661	T	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr15	55625933	rs569333	C	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr15	55632859	rs678892	G	T	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr15	55647227	rs8039224	G	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr15	55647492	rs8043415	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.362;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr15	55653031	rs501231	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.753;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr15	55664110	rs117236526	G	C	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=1.497;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:108,69:0.39:177
chr15	55664220	rs3203152	G	A	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr15	55665089	rs8041885	T	C	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-0.985;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:138,63:0.31:201
chr15	55665313	rs8041044	C	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr15	55700981	rs16953240	C	A	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.803;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:193,77:0.29:270
chr15	55710369	rs6493785	T	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	55759193	rs600753	T	C	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr15	55782708	rs73411030	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-1.921;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr15	55789910	rs17819126	C	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr15	55790298	rs28369251	A	G	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.585;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:100,30:0.23:130
chr15	55790310	rs3743204	G	T	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	55790352	rs74475478	A	G	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:52,159:0.75:211
chr15	55790530	rs3743205	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.940;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-2.433;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr15	55838506	rs11858599	G	A	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:72,113:0.61:185
chr15	55838585	rs11858624	G	T	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=0.839;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:49,84:0.63:133
chr15	55840995	rs2617227	A	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	55841032	rs12917202	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.222;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr15	55841209	rs76474612	T	A	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=5.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.324;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:40,55:0.58:95
chr15	55881111	rs1992236	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-2.284;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr15	55912875	rs1438914	T	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.83;ReadPosRankSum=0.709;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr15	55933199	rs1550326	G	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr15	55964778	rs149494002	C	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr15	55965490	rs142116445	TATAAAC	T	746.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.541;QD=20.74;ReadPosRankSum=0.642;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr15	55971737	rs76111246	T	C	94.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr15	55974742	.	T	TTTTA	380.73	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr15	56030543	rs12906885	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr15	56030756	rs4774222	T	C	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=7.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.190;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr15	56032519	rs10152116	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:37,11:0.23:48
chr15	56032975	rs7182733	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr15	56035010	rs12910180	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=2.224;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr15	56122664	rs12910830	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:74,51:0.41:125
chr15	56125135	rs8024944	C	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:63,21:0.25:84
chr15	56125182	rs8026172	T	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:72,37:0.34:109
chr15	56130286	.	A	T	20	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=23;MQ=60.0;NF=2;NR=2;PP=20;QD=13.6928031368;SC=AATAAAATACATACTAATAAA;SbPval=0.59;Source=Platypus;TC=16;TCF=9;TCR=7;TR=4;WE=56130294;WS=56130276;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr15	56130909	rs8028559	A	G	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	56139153	rs2288346	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-1.282;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	56140995	rs12232351	T	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:77,45:0.37:122
chr15	56144888	rs201121993	AATATATATAT	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.96;ReadPosRankSum=0.180;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	56152598	rs4774228	A	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	56152729	rs2303579	T	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr15	56152872	rs2303580	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr15	56207983	rs7174459	C	T	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:72,100:0.58:172
chr15	56258809	rs6493829	A	T	162.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.81;ReadPosRankSum=1.602;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr15	56285625	rs62045233	C	A	57.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	56297909	rs3959682	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr15	56297947	rs62046378	C	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.39;MQRankSum=-4.731;QD=4.39;ReadPosRankSum=-0.264;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr15	56386577	rs7170589	T	G	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	56387931	rs11071247	C	T	6981.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr15	56390616	rs748344	T	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr15	56394295	rs17238601	T	C	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=1.875;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr15	56535174	rs2460649	A	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr15	56657581	rs2682033	A	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	56680865	rs16976890	G	A	413.84	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr15	56680944	rs1477589	T	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	56686239	rs34544252	A	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	56719797	rs795785	G	T	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	56720715	rs1554410	T	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr15	56721264	rs795787	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	56721406	rs808730	C	T	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	56726212	rs72742658	T	C	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.073;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr15	56736681	rs35775595	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr15	56923714	rs8043381	G	A	7082.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr15	56946296	rs8028457	C	A	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	56959028	rs28620278	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	56981703	rs1871861	T	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	57210562	rs213150	C	A	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	57458784	rs3794617	C	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	57523563	rs3838866	AT	A	1662.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	57731335	rs1280395	A	C	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr15	57731728	rs1280396	A	G	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	57732743	rs1280398	T	C	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	57743933	rs1280406	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	57753867	rs1511951	C	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:60,20:0.25:80
chr15	57817050	rs10518925	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr15	57817066	rs2270488	C	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr15	57835766	rs78743802	C	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,15:0.25:61
chr15	57835868	rs1620315	C	G	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:119,47:0.28:166
chr15	57835903	rs1620402	T	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:105,44:0.30:149
chr15	57836552	rs1908189	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr15	57836823	rs8029295	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	57838258	rs2635390	T	C	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	57884181	rs1690328	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	57884219	rs2453089	A	G	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr15	57891858	rs12443389	A	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr15	57896366	rs2172611	A	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr15	57896658	rs2453091	C	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr15	57910164	rs937254	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	57910444	rs935548	A	G	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	57914094	rs2934439	G	T	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	57917821	rs2470360	C	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	57918069	rs2069133	A	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	57918090	rs2958059	A	G	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	57924586	rs2733593	T	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	57953564	rs986868	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	57967219	rs1991252	T	C	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	57967285	rs5812908	AT	A	1389.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:32,83:0.72:115
chr15	57976523	rs6493944	A	G	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	57976583	rs2554032	A	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	58000981	rs1062707	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	58247563	rs4646640	C	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	58253062	rs3784263	C	T	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	58253106	rs3784262	T	C	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	58253269	rs3784260	T	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	58256127	rs4646626	C	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	58256296	rs4646625	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	58257847	rs3784259	C	T	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	58357611	rs186496587	G	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr15	58465171	rs2292712	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	58465483	rs2292713	C	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	58471368	rs2249783	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	58476092	rs3832977	G	GA	1522.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	58476281	rs1867380	A	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	58729144	rs17190517	C	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	58834741	rs690	G	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr15	58837910	rs2414592	T	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	58838010	rs6083	A	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr15	58838038	rs6084	C	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr15	58840450	rs1007543	A	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	58853079	rs3829462	C	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	58853109	rs3829461	A	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	58853212	rs71964604	GAC	G	4912.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	58853218	rs55913623	C	T	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	58853307	rs4774305	C	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	58853363	rs1869129	C	T	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	58857230	rs4775080	G	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	58857255	rs4775081	A	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	58857378	rs17269397	A	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr15	58983318	rs7179724	G	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:70,31:0.31:101
chr15	58983425	rs7161889	G	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr15	58983588	rs7163162	T	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.314;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:65,27:0.29:92
chr15	58985164	rs4774310	T	G	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.666;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:128,43:0.25:171
chr15	59144199	rs16940850	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr15	59172382	rs34042545	T	TG	266.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr15	59180748	rs112400142	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr15	59185929	rs4238332	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;MQ=59.42;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	59213678	rs11630160	G	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:91,41:0.31:132
chr15	59225818	rs2279719	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.58;ReadPosRankSum=0.949;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	59323048	rs2899642	C	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr15	59453384	rs2306791	T	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.728;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr15	59464039	rs2306788	G	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr15	59494673	rs2306787	C	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr15	59499228	rs3809529	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.531;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:97,40:0.29:137
chr15	59499274	rs3809528	C	A	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.300;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.906;QD=4.79;ReadPosRankSum=0.976;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:108,43:0.28:151
chr15	59515434	rs2306779	C	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	59524056	rs7165587	T	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	59528994	rs11356613	AT	A	280.52	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr15	59548475	rs4508371	C	T	10372.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr15	59664607	rs7175010	C	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	59750930	rs11071448	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	59750960	rs7359171	A	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	59752053	rs3803445	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	59784334	rs4291860	C	A	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	59784493	rs4296198	C	T	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	59784648	rs4417505	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr15	59799278	rs4278683	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	59911892	rs3743119	G	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	59931556	rs8033208	G	C	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	59960261	rs6151568	T	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	59960956	rs71425879	T	TAC	485.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr15	59963488	rs1135148	A	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	59964798	rs4774342	C	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	59964987	rs6151535	G	A	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	59970298	rs2307272	C	A	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	59972353	.	G	GT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.969;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=12.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-1.959;SOR=3.684;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr15	59974566	rs2307275	C	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	59974777	rs6151483	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	59981242	rs2306358	C	T	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	59981515	rs3087328	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	59981590	rs754641	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	59981719	rs754642	C	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	60643302	rs3743269	T	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	60644074	rs11633619	C	T	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:110,175:0.61:285
chr15	60644157	rs11633657	C	T	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:29,72:0.71:101
chr15	60649579	rs5813020	TC	T	1895.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	60653205	rs17845226	C	A	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=1.017;QD=5.44;ReadPosRankSum=-0.603;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:49,24:0.33:73
chr15	60674672	rs3759911	C	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,64:0.57:112
chr15	60678298	rs11855679	T	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-0.085;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:34,58:0.63:92
chr15	60678328	rs11858864	C	T	1512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=-0.232;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:36,68:0.65:104
chr15	60678350	rs7182242	T	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr15	60685141	rs60755565	TAA	T	347.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.605;QD=13.38;ReadPosRankSum=-1.261;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr15	60685176	rs11631777	G	A	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.651;QD=16.27;ReadPosRankSum=0.980;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:17,45:0.73:62
chr15	60689927	rs12904756	G	C	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	60720488	rs59228235	T	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	60724118	rs12437617	C	G	250.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.73;ReadPosRankSum=-0.608;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr15	60724317	rs60675189	T	TA	125	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	60734697	rs1063100	A	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-1.266;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr15	60740915	rs1901993	C	T	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	60742063	rs1869484	G	T	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=0.056;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:31,43:0.58:74
chr15	60748783	.	T	TACACAC	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	60748810	rs7163427	T	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	60771289	rs3743267	A	G	7442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=1.003;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:150,332:0.69:482
chr15	60771438	rs11389291	G	GC	1060.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr15	60789798	rs11071539	G	T	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	60797607	rs7171309	T	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr15	60824108	rs10851682	T	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	60849026	rs78039601	A	C	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-1.249;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:91,50:0.35:141
chr15	61521567	.	A	G	402	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=2;HapScore=3;MGOF=33;MMLQ=24;MQ=58.93;NF=3;NR=13;PP=402;QD=27.2982007842;SC=CGACCGGCGAAAGCAGGAGGG;SbPval=0.59;Source=Platypus;TC=16;TCF=3;TCR=13;TR=16;WE=61521589;WS=61521557;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	61521579	.	AAA	GAG	375	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=4;HapScore=3;MGOF=33;MMLQ=29;MQ=58.89;NF=3;NR=12;PP=375;QD=28.5645249908;SC=GCAGGAGGGAAAAAGCAGGCG;SbPval=0.59;Source=Platypus;TC=15;TCF=3;TCR=12;TR=15;WE=61521589;WS=61521557;set=Platypus	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	62160758	rs7163441	C	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.969;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr15	62169072	rs11071634	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.253;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr15	62172977	rs3809516	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.263;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:61,7:0.10:68
chr15	62172985	rs3809517	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.592;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:62,8:0.11:70
chr15	62175003	rs12442506	C	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.568;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr15	62199342	rs28413840	T	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=1.523;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:67,10:0.13:77
chr15	62202277	rs79855776	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.950;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.150;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr15	62202482	rs10851704	C	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.763;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:360,66:0.15:426
chr15	62210274	rs11071639	G	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.353;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr15	62211450	rs963024	G	A	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	62212781	rs17238189	T	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.959;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr15	62221592	rs28411984	A	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	62221679	rs72747895	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.063;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:188,30:0.14:218
chr15	62223273	rs9788670	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.732;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:199,36:0.15:235
chr15	62228696	rs11071641	G	C	488.78	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr15	62239304	rs7166891	A	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	62239658	rs76905147	T	G	284.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=-0.796;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr15	62239697	rs7172145	C	T	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	62243090	rs10639244	A	AATAT	424.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	62244281	rs17238252	C	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr15	62254989	rs3784635	T	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-1.311;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:224,54:0.19:278
chr15	62255172	rs17304010	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr15	62259637	rs3784634	C	T	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	62259772	rs3784633	C	T	47.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr15	62274531	rs72749730	C	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.495;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr15	62284087	.	CT	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.071;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr15	62304420	.	GAC	G	164.73	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr15	62534764	rs2414766	A	T	2827.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=5.096;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.68;ReadPosRankSum=1.767;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:4,102:0.96:106
chr15	62535030	rs1996469	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	62539151	rs7402021	T	C	10106.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr15	62539153	rs59880159	T	TGG	10665.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr15	62539162	rs2955803	A	C	11078.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr15	62539185	rs2945418	T	C	10387.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr15	62539781	rs2611797	A	G	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	62936830	rs11852582	C	T	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	62939440	rs938979	T	C	1346.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=5.414;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.22;ReadPosRankSum=-0.710;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:4,54:0.93:58
chr15	62944448	rs10775179	G	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr15	62967342	rs1878785	A	G	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	62967395	rs1878784	C	T	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	62967554	rs1878783	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	62979016	rs12917611	A	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	62985267	rs2009523	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr15	62989775	rs8034474	T	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	62990971	rs12905981	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-1.382;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:204,30:0.13:234
chr15	62991210	rs9630428	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr15	62994428	rs12594220	G	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	63009733	rs938983	A	G	5350.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr15	63009804	rs1320191	C	T	7610.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr15	63014548	rs10775181	A	G	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr15	63030398	rs12900862	T	C	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr15	63040516	.	C	CA	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=4.881;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.625;QD=11.53;ReadPosRankSum=-1.942;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:12,44:0.79:56
chr15	63044379	rs7171264	A	G	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	63044637	rs7176359	A	G	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-2.480;SOR=0.282;set=HC	GT:AD:AF:DP	0/1:120,24:0.17:144
chr15	63047778	rs8033767	C	T	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-2.796;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:235,49:0.17:284
chr15	63047793	rs4775538	C	T	6040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=2.243;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:56,256:0.82:312
chr15	63055658	rs10152548	T	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	63075918	.	CTCTGTGTG	C,CTG	1652.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=46;set=Intersection	GT:AF:DP	1/2:0.21,0.79:39
chr15	63111739	rs3816988	T	C	11630.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:100,493:0.83:593
chr15	63127983	rs8038919	G	A	6734.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:77,281:0.78:358
chr15	63131117	rs937418	T	A	6603.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:50,281:0.85:331
chr15	63131237	rs10679176	C	CAG	4054.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:14,110:0.89:124
chr15	63335326	rs150546552	T	TTTG	541.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr15	63340416	rs73431508	A	G	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:26,132:0.84:158
chr15	63340607	rs4075047	T	C	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:17,112:0.87:129
chr15	63340647	rs4374117	A	G	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	63340705	rs111470259	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr15	63340989	rs148517607	C	CG	7596.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:23,184:0.89:207
chr15	63340990	rs117389407	C	T	7605.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:23,183:0.89:206
chr15	63349096	rs4775613	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-1.991;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:186,32:0.15:218
chr15	63351687	rs4775614	A	G	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	63351840	rs1071646	C	A	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	63353760	rs4774472	C	A	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	63355092	rs12442826	C	G	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:15,117:0.89:132
chr15	63358032	rs58304847	CT	C	615.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.652;QD=10.80;ReadPosRankSum=-1.061;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:13,44:0.77:57
chr15	63363401	rs201620283	C	CATTTT,CATTTTGTTTT	4633.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=123;set=Intersection	GT:AF:DP	1/2:0.82,0.18:76
chr15	63413997	rs8182083	C	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	63414083	rs34317102	A	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	63421796	rs111647885	T	C	9610.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:76,417:0.85:493
chr15	63433766	rs2729835	G	A	11158.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr15	63434110	rs8468	C	T	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	63446199	rs59953192	CAAAATT	C	2869.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:18,71:0.80:89
chr15	63446332	rs35018260	C	T	960.96	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:4,37:0.90:41
chr15	63447732	rs113399665	T	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr15	63448780	rs2270948	C	G	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:17,115:0.87:132
chr15	63449543	rs7170846	A	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-1.379;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:343,55:0.14:398
chr15	63449680	rs2292038	C	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=1.706;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:380,53:0.12:433
chr15	63449777	rs12902921	G	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,75:0.84:89
chr15	63515946	rs11632192	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	63516266	rs17828874	G	C	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	63552039	.	AT	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.733;QD=0.96;ReadPosRankSum=-0.263;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr15	63554824	rs72363505	GTA	G	774.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.471;QD=28.69;ReadPosRankSum=-1.974;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:3,24:0.89:27
chr15	63570441	.	G	GA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.102;QD=1.16;ReadPosRankSum=-0.587;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr15	63571279	.	GT	G	768.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.130;QD=11.14;ReadPosRankSum=2.380;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:17,52:0.75:69
chr15	63639016	rs2270764	A	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	63668010	.	C	CT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.307;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr15	63829538	rs11853890	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.918;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:73,11:0.13:84
chr15	63837058	rs62011333	G	A	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:9,51:0.85:60
chr15	63848805	rs3751043	C	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	63855190	rs61751106	G	A	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:8,108:0.93:116
chr15	63901113	rs1131647	A	G	485.10	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr15	63908587	rs62012820	G	T	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:27,109:0.80:136
chr15	63922752	rs10851731	T	A	9115.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:62,393:0.86:455
chr15	63925061	rs62012830	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr15	63927155	rs17766325	T	G	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,64:0.71:90
chr15	63937209	rs2229749	C	G	10429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.83;ReadPosRankSum=0.051;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:76,450:0.86:526
chr15	63941906	rs138962471	G	GT	1964.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,60:0.78:77
chr15	63946203	rs17185876	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr15	63953153	rs2272209	A	G	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:25,176:0.88:201
chr15	63954029	rs2228511	C	T	6535.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:46,269:0.85:315
chr15	63958105	rs10152174	A	G	5996.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:48,247:0.84:295
chr15	63958762	rs1815130	T	C	810.79	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr15	63966452	rs184807896	A	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr15	63966513	rs72367123	C	CA	1733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.168;QD=8.58;ReadPosRankSum=-1.770;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:77,125:0.62:202
chr15	63988357	rs2255243	C	G	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:15,77:0.84:92
chr15	63998863	rs17186968	T	G	326.80	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr15	64004913	rs75229626	C	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr15	64011104	rs7176133	T	C	2789.80	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:14,105:0.88:119
chr15	64015330	rs62012365	G	A	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,75:0.84:89
chr15	64019758	rs113752258	T	TA	473.06	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr15	64020073	rs9920746	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	64050300	rs12912999	G	A	1193.89	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:5,48:0.91:53
chr15	64215375	rs4776669	G	C	13864.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr15	64275645	rs55986634	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.771;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-1.642;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:85,13:0.13:98
chr15	64283625	rs7168753	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	64367745	rs332233	T	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	64367775	rs332234	T	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	64385851	rs332259	T	C	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	64388052	rs332258	G	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	64448365	rs2253557	C	T	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	64455123	rs4904	G	T	4705.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:36,198:0.85:234
chr15	64458281	rs143314613	TA	T	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.890;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr15	64496926	rs62024569	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.428;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:102,14:0.12:116
chr15	64508763	rs6494466	G	A	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr15	64551199	rs58926018	C	A	36.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr15	64551279	rs6494469	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=1.104;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr15	64558040	rs62021612	C	G	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.049;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:114,22:0.16:136
chr15	64675313	rs11635527	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr15	64679594	rs112815338	A	T	3466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.27;ReadPosRankSum=3.572;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:21,142:0.87:163
chr15	64693149	rs11380356	G	GT	1729.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=22.76;SOR=2.439;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	64706259	rs2046356	G	A	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:23,122:0.84:145
chr15	64737103	rs7167394	G	C	297.53	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr15	64737225	rs7167612	G	A	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.56;ReadPosRankSum=0.675;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:14,60:0.81:74
chr15	64742670	rs7172012	T	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,42:0.82:51
chr15	64915106	rs525878	C	T	12863.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr15	64968523	rs148512780	G	T	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:17,75:0.82:92
chr15	64972760	rs376039877	TTG	T	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-2.927;QD=2.33;ReadPosRankSum=-1.566;SOR=1.319;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr15	65040928	rs12911708	C	T	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	65041622	rs6494493	C	A	8020.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr15	65054562	rs57945504	T	TG	7098.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	65054571	rs71133474	A	AG	7720.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr15	65107804	rs74935506	G	T	3631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.845;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.75;ReadPosRankSum=-0.267;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:24,143:0.86:167
chr15	65108504	rs17802279	A	T	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:16,148:0.90:164
chr15	65108652	rs6494498	T	C	6330.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:37,266:0.88:303
chr15	65108707	rs7180207	G	C	4222.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:26,165:0.86:191
chr15	65110034	rs5024311	G	T	6658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.23;ReadPosRankSum=1.153;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:31,158:0.84:189
chr15	65110039	rs5024312	C	T	6771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.19;ReadPosRankSum=0.515;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:32,172:0.84:204
chr15	65110391	rs55945924	C	T	5988.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:28,226:0.89:254
chr15	65113493	rs1872592	G	A	16086.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr15	65116328	rs12899195	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	65116390	rs75683534	C	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.148;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:128,27:0.17:155
chr15	65140715	rs35048171	C	G	10485.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr15	65204285	rs11071820	G	T	1294.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.55;ReadPosRankSum=-0.188;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:6,57:0.90:63
chr15	65208227	rs1471834	G	A	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	65209880	rs2056497	A	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	65222875	rs7168400	T	C	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	65234869	rs3057944	C	CT,CTT	2274.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.025;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.000;QD=13.87;ReadPosRankSum=1.287;SOR=0.488;set=HC	GT:AD:AF:DP	1/2:34,41,89:0.25,0.54:164
chr15	65235776	rs34988193	A	G	6045.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:52,256:0.83:308
chr15	65235861	rs35136467	TC	T	2602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.715;QD=25.27;ReadPosRankSum=0.217;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:20,83:0.81:103
chr15	65236875	rs2414865	T	C	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:21,66:0.76:87
chr15	65242260	rs67821096	C	T	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:12,98:0.89:110
chr15	65268979	rs4776255	C	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	65275609	rs111408068	T	TATAA	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.57;ReadPosRankSum=-0.524;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr15	65295300	rs71136309	C	CA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.321;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr15	65298672	rs4776660	G	A	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.65;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	65308981	rs12912782	T	A	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:22,141:0.87:163
chr15	65312614	.	CA	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=3.071;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.363;QD=0.46;ReadPosRankSum=0.696;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr15	65315961	rs4776661	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-1.837;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:111,22:0.17:133
chr15	65344035	rs2946676	G	A	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	65347405	rs2232762	G	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.687;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:110,31:0.22:141
chr15	65350743	rs2232759	C	G	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:45,195:0.81:240
chr15	65350968	rs2232758	T	A	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:20,152:0.88:172
chr15	65351484	rs7175752	C	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	65357434	rs2232754	C	T	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:10,45:0.82:55
chr15	65357491	rs2232753	G	A	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	65369531	rs2946642	G	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.993;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:216,47:0.18:263
chr15	65369951	rs2919359	A	G	11522.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr15	65370353	rs2919360	T	C	17751.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,657:1.00:657
chr15	65370652	rs12901617	T	C	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:13,70:0.84:83
chr15	65449169	rs2946670	C	T	17593.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr15	65477364	.	AC	A	715.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DP=545;ExcessHet=3.0103;FS=13.925;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.491;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:401,79:0.16:480
chr15	65477387	.	G	A	7338.77	.	AC=1;AF=0.500;AN=2;DP=490;set=Intersection	GT:AD:AF:DP	0/1:74,392:0.84:466
chr15	65489128	rs938952	C	T	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	65489688	rs2679117	T	C	33734.77	.	AC=2;AF=1.00;AN=2;DB;DP=1288;set=Intersection	GT:AD:AF:DP	1/1:2,1282:1.00:1284
chr15	65490901	rs2679118	T	C	14061.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr15	65499461	.	AC	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.764;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:92,13:0.12:105
chr15	65621138	rs11853777	G	A	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr15	65621441	rs12907128	C	A	7616.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr15	65621857	rs509652	T	C	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr15	65623124	rs3058049	C	CTCTA	3005.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	65624228	rs686739	G	C	20826.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	1/1:4,798:1.00:802
chr15	65667724	rs666623	A	G	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	65681801	rs11071841	G	A	4308.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:25,172:0.87:197
chr15	65685968	rs11638647	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr15	65688558	rs35517676	C	CT	2642.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:5,80:0.94:85
chr15	65688791	rs66699194	T	G	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:35,150:0.81:185
chr15	65688824	rs1550028	C	G	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:22,81:0.79:103
chr15	65693397	rs667436	T	C	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:19,103:0.84:122
chr15	65694613	rs12439363	C	G	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,44:0.85:52
chr15	65703625	rs34355056	C	G	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:16,157:0.91:173
chr15	65744267	rs377663509	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=4.106;QD=0.93;ReadPosRankSum=-2.013;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr15	65746474	rs370866269	CA	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=1.016;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr15	65766399	rs8043478	C	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr15	65771121	rs72739494	T	C	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:24,117:0.83:141
chr15	65782451	rs60062953	A	AT	2988.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	65792839	rs11071846	G	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.952;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.458;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:124,34:0.22:158
chr15	65804213	rs352478	C	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	65804537	rs352477	A	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	65822823	rs422390	C	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	65828036	.	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.785;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr15	65856653	rs11539008	G	A	8730.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:57,383:0.87:440
chr15	65902922	rs6494529	G	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:7,100:0.93:107
chr15	65903398	rs4366668	G	A	17611.77	.	AC=1;AF=0.500;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	0/1:115,783:0.87:898
chr15	65931908	rs111310111	A	ACTGAGGC	9192.73	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:58,217:0.79:275
chr15	65935195	rs12101597	C	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr15	65935299	rs80200212	G	A	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:26,191:0.88:217
chr15	65952767	rs80093582	C	T	3538.79	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:15,138:0.90:153
chr15	65959645	rs113627784	C	T	561.89	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr15	65960195	rs6494531	A	G	1074.94	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:4,37:0.90:41
chr15	66023799	rs28556680	G	T	7851.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:62,339:0.85:401
chr15	66025010	rs11071849	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr15	66025275	rs1435126	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:5,59:0.92:64
chr15	66044604	rs8033741	A	T	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;MQ=59.85;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	66257236	.	C	CA	52	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=28;MQ=60.0;NF=2;NR=2;PP=52;QD=28.9614401178;SC=CGCCCATTCCCAGCTCATACC;SbPval=0.63;Source=Platypus;TC=22;TCF=12;TCR=10;TR=4;WE=66257244;WS=66257226;set=Platypus	GT:AD:AF:DP	1/0:18,4:0.18:22
chr15	66257408	rs333550	T	C	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	66274690	rs551474	T	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	66386853	rs7168565	G	A	3494.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:32,149:0.82:181
chr15	66600955	rs6494563	T	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-3.198;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:130,23:0.15:153
chr15	66612896	rs72748367	T	C	4041.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:29,173:0.86:202
chr15	66614922	rs10518685	A	C	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.660;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr15	66629403	rs3759786	C	A	2755.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:17,115:0.87:132
chr15	66639640	rs149405648	C	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-2.042;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:161,26:0.14:187
chr15	66641417	rs11856320	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=2.066;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr15	66644521	rs9806123	C	G	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	66645300	rs62627274	GA	G	324.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:86,27:0.24:113
chr15	66679819	rs4483802	G	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.348;QD=0.76;ReadPosRankSum=-0.995;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:99,18:0.15:117
chr15	66679850	rs71447901	TG	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=3.942;QD=0.50;ReadPosRankSum=-0.365;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:68,9:0.12:77
chr15	66727689	rs368099654	A	ATT	849.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.28;ReadPosRankSum=0.450;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr15	66735551	rs6494573	C	T	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.78;ReadPosRankSum=0.607;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:6,36:0.86:42
chr15	66745890	rs7169326	G	A	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	66777345	rs17586159	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:8,60:0.88:68
chr15	66792590	rs72752414	A	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.144;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr15	66795585	rs36076768	T	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.468;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:418,65:0.13:483
chr15	66795980	rs8043062	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.803;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:63,10:0.14:73
chr15	66801138	rs62011884	A	G	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.799;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr15	66806308	rs4238406	C	T	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	66821174	rs6494580	G	C	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-1.215;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:173,36:0.17:209
chr15	66850503	rs67124721	G	A	553.80	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr15	66857434	rs140244065	A	AC	622.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.47;ReadPosRankSum=0.585;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr15	66874670	rs8041988	C	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	66956824	rs7178388	A	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	66976149	rs2414910	G	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr15	67003841	rs2245159	C	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	67008708	rs2278603	G	A	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:27,176:0.87:203
chr15	67008737	rs2278604	C	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.436;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:254,38:0.13:292
chr15	67009941	rs2469123	C	G	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:19,154:0.89:173
chr15	67234251	rs266383	A	G	10062.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr15	67391394	rs5813427	GT	G	3660.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	67391497	rs1866319	C	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	67430223	rs1866318	T	C	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	67435075	rs745103	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	67457335	rs1065080	A	G	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	67476952	rs2289791	G	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	67476970	rs2289790	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	67501033	rs2289262	G	A	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	67528374	rs7173826	T	G	14790.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr15	67547301	rs3743347	C	A	16308.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr15	67596815	rs10438290	T	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	67652097	rs3743349	G	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	67652379	rs34407381	G	GA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=7.129;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.733;QD=9.91;ReadPosRankSum=1.483;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr15	67692502	rs7495023	T	C	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	67768151	rs3985641	G	C	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	67782440	rs10574862	AGGAAAT	A	5524.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	67885058	rs28637534	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	67951150	rs12438118	G	T	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=768;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.555;QD=0.62;ReadPosRankSum=1.201;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:656,102:0.13:758
chr15	67951228	rs5813451	GA	G	7196.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr15	67984705	rs4343227	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.958;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:217,30:0.12:247
chr15	67984818	rs55966838	C	T	10234.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:84,442:0.84:526
chr15	67985931	rs8034680	T	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	68041070	rs8037011	A	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	68114499	rs61734073	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr15	68117300	rs7170185	T	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.703;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:119,23:0.16:142
chr15	68121428	rs28539889	T	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.500;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr15	68121483	rs7183168	A	C	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	68122509	rs28587941	T	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=6.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.644;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:197,37:0.16:234
chr15	68124853	rs12901293	G	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:9,71:0.89:80
chr15	68346549	rs11855475	T	C	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	68445912	rs11633620	T	A	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	68468695	rs12438361	T	C	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:10,68:0.87:78
chr15	68492028	rs11071986	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=1.207;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:304,45:0.13:349
chr15	68510770	rs8025947	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.233;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=1.179;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:70,12:0.15:82
chr15	68522105	.	A	AGCGGAGCGGAGGGAGGCGGG	226.79	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	68583175	rs6494729	T	C	13360.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr15	68603596	rs145367554	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.493;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.890;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:97,25:0.20:122
chr15	68603625	rs898591	C	T	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	68603817	rs2271729	G	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.051;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr15	68605067	rs4776394	A	C	934.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=-1.495;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:5,41:0.89:46
chr15	68605169	rs4777035	G	A	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:10,106:0.91:116
chr15	68606098	rs7174384	C	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.289;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr15	68609833	rs1516871	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	68612385	rs35808090	C	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	68618961	rs2271722	T	C	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	68624175	rs7167822	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	68624290	rs2292745	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=1.631;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:293,45:0.13:338
chr15	68624396	rs7168069	A	C	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:3,178:0.98:181
chr15	68624641	rs6494733	A	C	16567.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr15	68624887	.	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.403;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:132,20:0.13:152
chr15	68628143	rs2306023	C	T	13881.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:1,483:1.00:484
chr15	68631740	rs2125998	A	G	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	68641362	rs61119953	AG	A	3160.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr15	68649587	rs12907890	G	A	5646.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:77,249:0.76:326
chr15	68656864	rs2306013	A	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	68656960	rs2306012	A	G	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr15	68695448	rs4777049	T	C	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	68724262	rs2305078	G	C	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	68987315	rs11072043	A	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	68987341	rs7359311	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	68987450	rs149581487	TTC	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.819;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:120,13:0.10:133
chr15	69003871	rs3736272	G	T	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	69007656	rs1542746	T	G	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr15	69011389	rs1491640	A	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.51;SOR=1.712;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	69011394	rs1491639	C	T	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.76;SOR=1.704;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	69018111	.	C	CT	635.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr15	69112946	rs4777089	C	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	69112971	rs35802209	G	GCA	1483.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:8,51:0.86:59
chr15	69238445	rs3743093	G	A	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:81,134:0.62:215
chr15	69325581	rs311893	C	T	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	69327825	rs311889	C	T	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	69328226	rs12907196	C	T	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.774;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:37,62:0.63:99
chr15	69329623	rs34924807	G	A	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=-1.006;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr15	69329623	.	GA	AG	363	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5002;HP=1;HapScore=2;MGOF=1;MMLQ=20;MQ=60.0;NF=13;NR=13;PP=363;QD=16.017995187;SC=GGAGCAGCTGGATACCCTGTC;SbPval=0.56;Source=Platypus;TC=30;TCF=15;TCR=15;TR=26;WE=69329632;WS=69329613;set=Platypus	GT:AD:AF:DP	1/0:4,26:0.87:30
chr15	69329624	rs2246273	A	G	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	69347593	rs311905	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	69349087	rs311906	T	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	69548046	.	TA	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.022;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr15	69561518	rs3865014	G	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:41,97:0.70:138
chr15	69676892	.	A	G	383	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=1;HapScore=3;MGOF=22;MMLQ=24;MQ=55.33;NF=18;NR=0;PP=383;QD=23.2095118082;SC=CGTGTTCATCATGGAGGGTGA;SbPval=1.0;Source=Platypus;TC=18;TCF=18;TCR=0;TR=18;WE=69676912;WS=69676882;set=Platypus	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	69676904	.	C	T	525	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=4;HapScore=3;MGOF=22;MMLQ=28;MQ=55.89;NF=21;NR=0;PP=525;QD=26.6557720261;SC=GGAGGGTGAGCGGGCCCTCCG;SbPval=1.0;Source=Platypus;TC=21;TCF=21;TCR=0;TR=21;WE=69676912;WS=69676882;set=Platypus	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	69676944	.	T	C	1116	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=1;HapScore=1;MGOF=22;MMLQ=22;MQ=59.25;NF=41;NR=13;PP=1116;QD=21.3105780101;SC=GCGGGTCCTCTGTGTTCATGG;SbPval=0.61;Source=Platypus;TC=55;TCF=41;TCR=14;TR=54;WE=69676952;WS=69676934;set=Platypus	GT:AD:AF:DP	1/1:1,54:0.98:55
chr15	69683945	rs2242464	C	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	69684376	rs7183388	G	A	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.15;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	69684389	rs11634798	A	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	69684477	rs58280155	T	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	69684481	rs112633523	AT	A	901.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	69684507	rs11634850	A	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=26.25;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	69709686	rs3759825	G	A	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	69709792	rs61751119	C	T	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-0.609;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:63,36:0.36:99
chr15	69715488	rs7180624	C	T	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	69715791	rs146515193	G	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr15	69728949	rs3825858	A	G	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr15	69732483	rs4776448	G	A	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	69732736	rs937724	C	T	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	69740350	rs13613	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	69746222	rs79243634	A	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr15	69747675	rs1463911	A	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	69754221	rs8041861	T	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr15	70345626	rs1057865	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:79,36:0.31:115
chr15	70346923	rs2228178	C	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=1.228;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:56,25:0.31:81
chr15	70347362	rs4777227	C	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr15	70347816	rs11440222	A	AG	101.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr15	70348523	rs2270871	G	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=1.572;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr15	70349744	rs8036209	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.016;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr15	70350457	rs2291982	C	G	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.203;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.084;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:37,57:0.61:94
chr15	70351649	rs7176098	C	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.617;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr15	70351788	rs2133977	T	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	70352968	rs2228176	C	G	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:46,78:0.63:124
chr15	70353075	rs3825968	C	A	1849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=1.653;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:53,86:0.62:139
chr15	70368571	rs3830411	A	ATGC	1406.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr15	70371571	rs12901770	A	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	70388449	rs71149952	AG	A	3080.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	70958944	rs62016909	G	A	771.94	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:3,30:0.91:33
chr15	70964274	rs62016910	T	G	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:8,49:0.86:57
chr15	70971741	rs143519196	C	CTAAATAAA	1061.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=66.36;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	70975092	rs62016913	T	C	3272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.72;ReadPosRankSum=-1.709;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:21,145:0.87:166
chr15	70991925	rs4776525	G	C	30824.77	.	AC=2;AF=1.00;AN=2;DB;DP=1198;set=Intersection	GT:AD:AF:DP	1/1:0,1185:1.00:1185
chr15	70992005	rs1424400	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=2.088;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:551,81:0.13:632
chr15	70994283	rs6494889	G	A	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr15	71124505	rs150824038	G	A	9804.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:69,425:0.86:494
chr15	71175296	rs1528828	A	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	71184278	rs2959174	G	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	71184495	rs2955035	A	G	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	71185793	rs2955036	T	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	71185837	rs2955037	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	71185853	rs5813612	CTT	C	1152.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	71186811	rs1881568	C	G	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	71186863	rs113843622	G	C	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=5.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-1.607;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:195,42:0.18:237
chr15	71276480	rs3834543	GCAA	G	5479.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:21,133:0.86:154
chr15	71341050	rs1713569	G	A	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:20,90:0.82:110
chr15	71403406	rs6494895	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=1.031;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr15	71535458	rs12440013	G	C	4152.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:34,175:0.84:209
chr15	71548937	rs4777350	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.648;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:232,38:0.14:270
chr15	72023422	rs2277540	C	T	7985.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:55,345:0.86:400
chr15	72037610	rs2291994	G	A	1966.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.92;ReadPosRankSum=1.065;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:10,84:0.89:94
chr15	72050163	rs2625533	C	G	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	72073003	rs2291275	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=-2.270;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:345,46:0.12:391
chr15	72105928	rs11351249	AC	A	12625.73	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr15	72142280	rs71281963	A	ATTTATGAACCCATTCACTAT	1565.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr15	72143855	rs16956328	A	T	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,55:0.83:66
chr15	72152224	rs3214958	CG	C	1170.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr15	72191073	rs2415128	T	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.480;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:411,85:0.17:496
chr15	72191266	rs2415129	C	T	11426.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr15	72227837	rs2306490	A	G	2482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=1.604;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:19,115:0.86:134
chr15	72252189	rs5813671	T	TA	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=1.861;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:42,37:0.47:79
chr15	72252498	rs12916951	C	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:8,46:0.85:54
chr15	72292115	rs2306488	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:15,83:0.85:98
chr15	72302667	rs2200056	T	C	4047.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:28,173:0.86:201
chr15	72302894	rs2957742	G	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.420;SOR=0.046;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr15	72431883	rs7175792	G	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-1.093;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr15	72432583	rs930871	A	G	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	72454729	rs897731	C	G	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,224:1.00:225
chr15	72457551	rs2959944	A	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	72459971	rs35713471	C	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr15	72460339	rs8025939	T	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-1.168;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr15	72462165	rs11072348	A	C	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	72462350	rs34487006	G	T	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:12,79:0.87:91
chr15	72462831	rs7182776	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr15	72509647	rs8192395	C	CA	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr15	72543084	rs713048	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr15	72543656	rs2959904	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	72545876	rs1426166	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	72546765	rs2912227	A	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	72548765	rs12904652	T	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr15	72556799	rs11072352	G	A	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	72556847	rs12591338	T	A	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.999;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-0.026;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:33,72:0.69:105
chr15	72557955	rs1426170	T	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	72559060	rs4776589	G	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:38,56:0.60:94
chr15	72559243	rs67268368	AAC	A	1141.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr15	72637795	rs4777502	T	C	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	72638892	rs1800431	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	72767214	.	TGGC	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.396;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:67,8:0.11:75
chr15	72859047	rs11403578	A	AT	227.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	72864578	rs5813687	AT	A	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=1.607;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr15	72875521	.	G	GT	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=3.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-1.301;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr15	72879653	rs139334001	A	ATTG	1122.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	72987588	rs4777527	G	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	73002035	rs8033604	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	73009208	rs80334351	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=0.995;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr15	73021855	rs6495015	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	73023937	rs12914333	T	C	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr15	73024181	rs9806635	G	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	73027478	rs2277598	T	C	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	73028372	rs79602431	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=0.674;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	73028375	rs12324395	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	73044575	rs9460	G	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	73067234	rs11634630	T	C	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	73408756	rs143744012	CTA	C	228.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	73409213	rs3840037	A	AT	470.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:3,26:0.90:29
chr15	73418741	.	AT	A	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=5.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=1.461;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:55,22:0.29:77
chr15	73528937	rs747873	T	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	73541513	rs3736510	A	G	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	73545732	rs2623989	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	73551250	rs2251205	A	G	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	73564881	rs1131854	C	T	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	73566942	rs497539	G	A	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	73595089	rs3833036	T	TA	5149.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	73614834	rs529004	T	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	73616635	rs481579	T	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	73848808	rs922687	A	C	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr15	73982965	rs6495076	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr15	74000839	rs2291011	G	A	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=0.954;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:30,118:0.80:148
chr15	74032179	rs71678977	AAT	A	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.25;ReadPosRankSum=1.282;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr15	74032234	rs11857595	C	T	778.81	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr15	74032479	rs150411210	G	C	10552.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:81,438:0.84:519
chr15	74033033	rs11858458	A	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	74043523	rs7497362	A	G	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr15	74173668	rs7496005	A	G	3642.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:30,164:0.85:194
chr15	74176453	rs66619071	GA	G	5290.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	74177250	rs35697698	C	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.894;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:273,49:0.15:322
chr15	74178605	rs2278864	G	T	1924.89	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:7,73:0.91:80
chr15	74180923	.	TTCC	T	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=2.916;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=5.39;ReadPosRankSum=2.098;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:80,20:0.20:100
chr15	74181255	rs7170803	A	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	74219546	rs1048661	G	T	8711.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:60,348:0.85:408
chr15	74234082	rs11638944	C	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.704;QD=2.87;ReadPosRankSum=-1.796;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr15	74234171	rs8042181	A	G	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	74234393	rs189632283	C	T	1025.88	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:5,41:0.89:46
chr15	74239253	rs78826069	G	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:11,64:0.85:75
chr15	74240354	rs2304721	C	A	8315.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:63,334:0.84:397
chr15	74244278	rs8818	C	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	74276551	rs9630436	T	C	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	74276560	rs9630437	T	C	8049.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=2.007;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	74277795	rs10851866	T	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	74280867	rs11072460	T	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	74282833	rs3214695	G	GC	2817.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	74282880	rs3816197	C	T	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	74284209	rs3816198	C	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	74284406	rs2304715	C	G	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	74317043	rs2277599	T	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	74325182	rs2304716	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	74326711	rs2304718	G	A	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	74328116	rs743580	A	G	16627.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr15	74328141	rs743581	G	T	14923.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr15	74421010	rs2279379	C	G	5172.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:36,214:0.86:250
chr15	74467856	rs1052622	G	A	17715.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr15	74472716	rs351242	G	A	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	74477216	rs351238	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	74477239	rs351237	G	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	74483415	rs351228	T	C	6558.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	74489883	rs351218	A	G	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	74499956	rs351222	G	C	9193.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr15	74536285	rs67845844	CA	C	685.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.183;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:10,50:0.83:60
chr15	74558927	rs440793	A	G	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	74560566	rs1038436	C	T	5241.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:33,213:0.87:246
chr15	74572242	rs351165	T	A	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	74572917	rs351164	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	74611182	rs751528	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-1.533;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:60,7:0.10:67
chr15	74611189	rs751527	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.360;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:55,6:0.10:61
chr15	74622365	rs2277601	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr15	74622457	rs2277602	A	C	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=0.012;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:11,55:0.83:66
chr15	74622678	rs1564782	G	A	1024.81	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:4,41:0.91:45
chr15	74623272	rs2277605	G	A	6639.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:38,293:0.89:331
chr15	74623302	rs2277606	T	C	7689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=3.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=0.139;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:45,329:0.88:374
chr15	74627222	rs2279356	G	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:10,61:0.86:71
chr15	74628242	rs900802	C	T	6784.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:41,282:0.87:323
chr15	74628891	rs2959003	A	G	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:11,58:0.84:69
chr15	74659609	rs28681535	G	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-2.100;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:244,44:0.15:288
chr15	74659769	.	GA	G	593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.055;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:250,38:0.13:288
chr15	74703929	rs741761	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=6.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-1.556;SOR=1.437;set=HC	GT:AD:AF:DP	0/1:121,20:0.14:141
chr15	74709566	rs2075590	T	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=6.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-3.645;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:78,19:0.20:97
chr15	74710485	rs2072649	G	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.435;SOR=1.462;set=HC	GT:AD:AF:DP	0/1:99,18:0.15:117
chr15	74710593	rs28362912	C	T	9574.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr15	74742468	rs2289188	A	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=2.426;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:101,24:0.19:125
chr15	74749015	rs7166701	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.340;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:111,17:0.13:128
chr15	74836316	rs8043032	A	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-0.517;QD=1.01;ReadPosRankSum=2.427;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:220,38:0.15:258
chr15	74865017	rs377466587	CA	C	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=10.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.839;SOR=0.134;set=HC	GT:AD:AF:DP	0/1:114,39:0.25:153
chr15	74865409	rs10459601	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=1.084;SOR=2.651;set=HC	GT:AD:AF:DP	0/1:39,6:0.13:45
chr15	74883323	rs62005806	G	A	621.78	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:2,21:0.91:23
chr15	74883851	rs4886601	T	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.330;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:217,33:0.13:250
chr15	74908132	rs8040674	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.974;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr15	74914649	rs56298217	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.880;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:158,35:0.18:193
chr15	74919593	rs11629749	C	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.285;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.592;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:122,25:0.17:147
chr15	75041917	rs762551	C	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	75044238	rs2472304	G	A	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	75047426	rs2470890	C	T	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	75080872	rs2168519	T	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	75081078	rs2168518	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	75112974	rs148169854	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.436;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr15	75114322	rs11636952	T	C	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	75115895	rs7162232	G	A	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	75120521	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=4.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.626;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:308,48:0.13:356
chr15	75129594	rs2290573	G	A	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	75130015	rs11312224	AG	A	7720.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:43,281:0.87:324
chr15	75130093	rs12898397	T	C	10327.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=28.14;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr15	75130573	rs2290572	A	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	75131661	rs4886615	A	G	6884.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr15	75131959	rs936227	A	G	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	75132490	rs12908814	C	G	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	75135447	rs2290574	T	C	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	75140854	rs3765066	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	75183809	.	C	A	3827.77	.	AC=1;AF=0.500;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	0/1:34,162:0.83:196
chr15	75183935	rs11638130	G	A	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	75185670	rs7495739	A	G	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr15	75189930	rs1130741	A	G	9233.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr15	75230502	rs6495131	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	75305040	rs7174129	A	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=1.346;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:415,74:0.15:489
chr15	75310075	rs12593566	C	A	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	75336729	rs2304899	A	G	17287.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr15	75498548	rs1466663	A	G	12714.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr15	75498744	rs1873379	G	C	15375.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:111,635:0.85:746
chr15	75499602	rs12591506	C	A	24336.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:0,852:1.00:852
chr15	75499619	rs11072531	T	C	20936.77	.	AC=2;AF=1.00;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	1/1:0,783:1.00:783
chr15	75499861	rs11072532	G	A	17542.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr15	75499995	rs28509789	T	G	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.175;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:519,79:0.13:598
chr15	75503147	rs3743211	G	A	7707.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr15	75518241	rs1994639	G	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.03;QD=43.29;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	75518246	rs1994640	A	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.20;QD=42.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	75518870	.	G	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=6.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-1.453;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:97,13:0.12:110
chr15	75521833	rs6495165	G	C	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	75630562	rs143588533	C	T	5187.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:45,210:0.82:255
chr15	75630635	rs7166436	A	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:14,64:0.82:78
chr15	75640423	rs79244935	C	T	1321.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.61;ReadPosRankSum=1.593;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:8,63:0.89:71
chr15	75643714	rs11634109	T	C	2428.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.43;ReadPosRankSum=-2.431;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:14,111:0.89:125
chr15	75648617	rs5745935	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=4.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.470;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:235,35:0.13:270
chr15	75651022	rs149997575	C	CCCACATGCTGCCCAGCCCATA	14628.73	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:69,353:0.84:422
chr15	75653378	rs7174408	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	75655765	rs34386653	G	GT	2720.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:18,82:0.82:100
chr15	75660662	rs75458893	C	T	916.98	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:4,36:0.90:40
chr15	75664570	rs4886696	AA	TT	4313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.792;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.56;ReadPosRankSum=-1.672;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:13,105:0.89:118
chr15	75692303	rs4886699	A	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.662;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:465,67:0.13:532
chr15	75699523	rs8024276	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.20;ReadPosRankSum=-0.733;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:183,26:0.12:209
chr15	75702754	rs79147131	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr15	75890612	rs3210683	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr15	75890689	rs1128585	G	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:16,74:0.82:90
chr15	75897646	rs372246427	AT	A	254.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-0.322;SOR=2.613;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr15	75902469	rs76965612	G	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:21,84:0.80:105
chr15	75913430	rs77935734	C	T	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:4,57:0.93:61
chr15	75916931	rs4886719	T	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	75916940	rs4886720	T	G	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	75916965	rs113978196	G	A	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=1.978;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:11,54:0.83:65
chr15	75932129	rs13737	G	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-1.043;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:188,26:0.12:214
chr15	75967814	rs1127646	A	G	301.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.07;ReadPosRankSum=0.881;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr15	75970070	rs8023621	C	T	4276.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:26,176:0.87:202
chr15	75977920	rs62027240	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:5,52:0.91:57
chr15	75979782	rs8030131	G	T	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:19,103:0.84:122
chr15	75980112	rs4414463	A	G	10339.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:103,451:0.81:554
chr15	75981507	rs12900539	A	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr15	75982428	rs7182906	C	T	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:18,123:0.87:141
chr15	76030993	rs12904654	A	G	1104.96	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr15	76031008	rs7181595	C	T	947.56	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:3,30:0.91:33
chr15	76067911	rs12101948	A	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:18,70:0.80:88
chr15	76067987	rs34243492	A	G	2733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.23;ReadPosRankSum=-0.407;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:28,122:0.81:150
chr15	76074518	rs3991352	T	G	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:16,86:0.84:102
chr15	76075343	rs79164384	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.898;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:112,16:0.12:128
chr15	76075943	rs11852472	C	A	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:17,65:0.79:82
chr15	76078290	rs148309049	G	T	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:20,115:0.85:135
chr15	76168406	rs66475371	C	CA	188.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=9.031;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.516;QD=9.93;ReadPosRankSum=-0.817;SOR=4.034;set=HC	GT:AD:AF:DP	1/1:4,15:0.79:19
chr15	76175828	rs1868020	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	76182949	rs335713	C	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	76183191	rs62028936	T	A	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:9,94:0.91:103
chr15	76189624	rs335692	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	76191802	rs335689	G	A	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr15	76191852	rs335688	T	C	6313.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr15	76191966	rs335687	T	C	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	76197071	rs3073843	A	ATCT	2222.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	76222139	rs56311307	A	G	1211.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.85;ReadPosRankSum=-0.751;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr15	76222139	.	AG	GT	872	.	AC=2;AF=1.00;AN=2;BRF=0.08;FR=1.0000;HP=1;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=34;NR=3;PP=872;QD=25.0126452665;SC=GTGGAGTGCAAGTCAGTAACA;SbPval=0.51;Source=Platypus;TC=41;TCF=38;TCR=3;TR=37;WE=76222148;WS=76222135;set=Platypus	GT:AD:AF:DP	1/1:4,37:0.90:41
chr15	76222140	rs335679	G	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	76248427	rs10711025	GT	G	1016.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:6,58:0.91:64
chr15	76251344	rs11638364	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr15	76251452	rs12913434	A	G	1503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=0.750;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:13,69:0.84:82
chr15	76496232	rs937732	G	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.842;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:633,100:0.14:733
chr15	76496340	rs937733	C	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.730;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:356,53:0.13:409
chr15	76510073	rs1533600	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	76518346	rs11281932	C	CCCTTA	1671.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	76584686	rs3215000	T	TA	1095.27	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:5,44:0.90:49
chr15	76603679	rs62027051	G	C	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.534;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:167,28:0.14:195
chr15	76630303	rs4636879	T	C	12918.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr15	76632907	rs7180257	A	G	7195.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr15	76673627	rs17460201	T	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr15	76673716	rs3765115	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-2.609;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:116,18:0.13:134
chr15	76726465	rs1607017	G	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.974;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.611;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:197,43:0.18:240
chr15	76763514	rs11072597	C	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.255;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr15	76957958	rs280021	A	G	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	76994111	rs117552750	T	C	6966.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:65,306:0.82:371
chr15	77064389	rs66496622	TGAA	T	1704.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	77085740	rs3102707	C	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	77176158	rs3812908	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.201;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:82,16:0.16:98
chr15	77197745	rs907594	C	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.902;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr15	77231158	rs4886841	C	T	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr15	77241542	rs15939	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.360;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:174,32:0.16:206
chr15	77241568	rs1711018	T	C	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	77308255	rs78138579	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=1.692;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:84,14:0.14:98
chr15	77308387	rs7173067	G	A	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	77310636	rs3812911	G	C	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	77323009	rs2469237	T	C	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	77323029	rs12903227	C	A	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:24,89:0.79:113
chr15	77324880	rs4078354	A	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.035;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:158,31:0.16:189
chr15	77328108	rs11373069	G	GA	2296.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	77363451	rs11072641	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.88;ReadPosRankSum=0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	77450964	rs12909704	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.440;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:203,29:0.12:232
chr15	77907145	rs3743481	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=-0.858;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:242,32:0.12:274
chr15	77907535	rs2271396	C	G	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	77907775	rs2271397	T	C	17687.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr15	77907784	rs2271398	G	A	17793.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr15	78189075	rs4569232	G	A	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=0.649;QD=1.52;ReadPosRankSum=0.936;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:246,50:0.17:296
chr15	78189084	rs4243062	T	C	8711.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	78189206	rs4886959	C	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:8,98:0.92:106
chr15	78189268	rs11630652	A	T	1469.88	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:7,62:0.90:69
chr15	78189370	rs4441238	A	C	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	78196212	rs7178928	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	78207762	rs57642131	C	A	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:10,68:0.87:78
chr15	78207864	rs66955965	C	A	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:19,61:0.76:80
chr15	78207914	rs67793790	T	C	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-1.595;QD=17.88;ReadPosRankSum=-1.595;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:17,58:0.77:75
chr15	78207974	rs71400903	T	C	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:21,107:0.84:128
chr15	78208021	rs58158543	T	C	4177.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:27,163:0.86:190
chr15	78208141	rs58331113	C	T	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:43,161:0.79:204
chr15	78208236	rs76380402	A	G	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.563;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=40.526;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-5.328;QD=18.76;ReadPosRankSum=-1.479;SOR=2.976;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr15	78208239	rs74587726	T	C	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=41.197;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=-5.682;QD=18.73;ReadPosRankSum=-1.445;SOR=3.123;set=HC	GT:AD:AF:DP	0/1:42,38:0.47:80
chr15	78211339	rs71400918	T	C	4279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-1.006;QD=36.89;ReadPosRankSum=1.191;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,103:0.89:116
chr15	78211344	rs144363575	C	T	4346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-0.855;QD=35.92;ReadPosRankSum=0.657;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:13,108:0.89:121
chr15	78211345	rs12592294	A	G	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;QD=42.64;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	78211411	.	GCCTCCTGCTCTCGGAGCATCT	G	5857.73	.	AC=1;AF=0.500;AN=2;DP=222;set=Intersection	GT:AD:AF:DP	0/1:44,159:0.78:203
chr15	78211471	rs67630434	C	T	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:35,146:0.81:181
chr15	78232240	rs12907147	G	C	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	78234183	.	G	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-0.831;QD=2.24;ReadPosRankSum=1.513;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:97,25:0.20:122
chr15	78268603	rs28360704	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:8,59:0.88:67
chr15	78269731	rs11852862	G	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.07;QD=44.26;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	78269737	rs11852790	AC	TT	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=56.69;QD=44.28;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	78269747	rs11852867	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.19;QD=44.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	78269760	rs71402931	C	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.05;QD=43.27;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	78269762	rs78023616	C	T	1254.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.86;QD=44.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	78269763	rs75184028	A	G	1254.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.86;QD=44.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	78269793	rs67603081	CT	C	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	78269798	rs142983118	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.07;QD=46.15;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	78269801	rs140951103	G	A	781.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.07;QD=43.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	78269802	rs143146370	T	TG	772.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.07;QD=42.93;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	78272318	rs12439777	C	G	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=3.117;QD=1.46;ReadPosRankSum=-1.277;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:271,57:0.17:328
chr15	78272330	rs56081051	C	T	4876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-4.938;QD=14.56;ReadPosRankSum=0.705;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:96,239:0.71:335
chr15	78272478	rs58205250	G	A	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=54.03;MQRankSum=1.943;QD=15.76;ReadPosRankSum=1.941;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:35,75:0.68:110
chr15	78276594	rs72732526	AC	CA	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;JOINED;set=Intersection	GT:AD:AF:DP	0/1:11,83:0.88:94
chr15	78276660	rs12916320	A	G	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	78369972	rs7176425	G	C	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:12,48:0.80:60
chr15	78390414	rs2289524	T	C	12445.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:99,549:0.85:648
chr15	78390909	rs12593575	C	T	6563.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:56,279:0.83:335
chr15	78401540	rs12592068	A	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	78401620	rs77370542	C	T	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:12,81:0.87:93
chr15	78403004	rs1992469	A	G	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	78403179	rs2867986	C	G	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	78423479	rs8040395	T	C	6122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=1.571;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:44,289:0.87:333
chr15	78457242	rs12904700	A	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.270;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr15	78457537	rs11394499	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=0.837;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr15	78458485	rs3816253	T	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=1.089;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:125,31:0.20:156
chr15	78458797	rs2304825	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.998;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.289;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:62,10:0.14:72
chr15	78466597	rs11631653	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.608;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:55,9:0.14:64
chr15	78472157	rs370177754	TCA	T	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr15	78473309	rs12915634	G	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.764;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:203,38:0.16:241
chr15	78474776	rs66983917	AC	A	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=2.822;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.015;QD=2.28;ReadPosRankSum=0.986;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:230,51:0.18:281
chr15	78518951	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=1.340;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr15	78519135	.	T	TATATATATAATATATATAATATATATATATATA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.96;ReadPosRankSum=0.189;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	78526556	rs10162606	C	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	78556571	rs62007805	G	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	78556589	rs12898295	C	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.37;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	78556967	.	A	AGCG	1889.73	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	78557005	rs28484827	A	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	78557086	rs66489434	GC	G	8868.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=29.86;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr15	78557720	rs62007832	C	G	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:8,67:0.89:75
chr15	78558509	rs2037347	G	A	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	78558584	rs142025971	CAT	C	9634.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:49,236:0.83:285
chr15	78565478	rs7163689	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	78565616	rs56229935	A	G	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.89;ReadPosRankSum=0.428;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:10,48:0.83:58
chr15	78572359	rs9806426	C	G	9840.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr15	78580481	rs2277551	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	78581892	rs1879153	C	T	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	78581938	rs16969675	C	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.793;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:147,25:0.15:172
chr15	78585106	rs2280364	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=1.943;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:99,17:0.15:116
chr15	78587111	rs138711577	TTTG	T	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.770;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:74,11:0.13:85
chr15	78587743	rs34232388	C	CT	248.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.813;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.577;QD=13.10;ReadPosRankSum=2.520;SOR=1.492;set=HC	GT:AD:AF:DP	1/1:3,16:0.84:19
chr15	78587910	rs1040262	A	G	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	78633595	rs2139440	T	G	4990.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:34,204:0.86:238
chr15	78730591	rs954144	C	T	9620.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr15	78758677	rs2958720	G	C	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	78758853	rs2938672	A	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;MQ=60.45;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	78777312	rs9788758	G	A	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	78780104	rs2230940	T	C	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	78786410	rs4887060	A	C	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	78789488	rs13180	C	T	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr15	78807231	rs148681032	C	CCTCTCTCTCTCT	561.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=0.385;QD=35.11;ReadPosRankSum=1.687;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr15	78807250	.	C	CTCTCTCTCTATA	2992	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=3;MGOF=41;MMLQ=26;MQ=57.46;NF=10;NR=7;PP=2992;QD=20;SC=CTCTCTCTCTCTATATATATA;SbPval=0.72;Source=Platypus;TC=26;TCF=14;TCR=12;TR=17;WE=78807262;WS=78807240;set=Platypus	GT:AD:AF:DP	0/1:9,17:0.65:26
chr15	78807252	rs59105191	A	C	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-0.407;QD=21.55;ReadPosRankSum=-1.080;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr15	78819627	rs67056220	CA	C	401.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.516;QD=12.55;ReadPosRankSum=-0.363;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr15	78825498	rs12907169	G	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=6.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.429;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr15	78825562	rs12906951	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=0.674;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:131,18:0.12:149
chr15	78834689	rs2292117	A	G	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:11,62:0.85:73
chr15	78836631	rs67437837	CTGA	C	6725.73	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:31,164:0.84:195
chr15	78838837	rs76189127	C	A	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:25,5:0.17:30
chr15	78839110	rs35886075	CT	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-1.039;QD=6.98;ReadPosRankSum=-0.818;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr15	78841220	rs8053	T	C	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:16,89:0.85:105
chr15	78857896	rs503464	T	A	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:15,98:0.87:113
chr15	78889158	.	C	T	702.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr15	78911261	rs2869547	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	79044330	rs11632672	A	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	79045517	rs34816637	G	A	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.99;QD=44.10;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	79045521	rs12917502	T	C	5926.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.61;QD=44.56;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	79054900	rs7495616	C	G	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	79054911	rs11852980	A	G	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.51;MQRankSum=-3.874;QD=32.25;ReadPosRankSum=-1.006;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:12,62:0.84:74
chr15	79054919	rs11853054	G	A	2254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.69;MQRankSum=-4.413;QD=33.16;ReadPosRankSum=-0.514;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:13,55:0.81:68
chr15	79054932	rs11072801	G	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr15	79056526	rs3830240	TC	T	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	79057093	rs6495267	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	79058572	rs1809421	T	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	79058923	rs1809422	G	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	79058951	rs28699256	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr15	79059449	rs1810165	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-0.351;QD=2.58;ReadPosRankSum=0.927;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr15	79060414	.	GGGGGTGGGGAGTTGGCGGGGGAT	G	168.80	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	79063474	rs1809409	A	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr15	79064080	rs11635931	G	A	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:13,86:0.87:99
chr15	79064143	rs11635870	C	G	1881.85	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:11,83:0.88:94
chr15	79065380	rs7177201	T	C	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	79065562	rs8036224	A	G	6443.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.41;QD=27.19;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr15	79069121	rs11854507	A	G	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:23,136:0.86:159
chr15	79069187	rs145673455	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.145;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.887;QD=1.16;ReadPosRankSum=-1.634;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr15	79069734	rs7161774	G	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=1.467;QD=1.15;ReadPosRankSum=1.630;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr15	79069991	.	T	C	1346.77	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,59:0.75:79
chr15	79083376	rs2277546	C	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr15	79083591	rs2277545	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr15	79089007	rs3743057	T	C	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:90,178:0.66:268
chr15	79089111	rs3825807	A	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr15	79092481	rs3971703	G	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	79092750	rs7173267	G	C	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:38,89:0.70:127
chr15	79132814	rs7402877	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=-0.148;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr15	79133026	rs6495341	C	T	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=1.273;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:58,38:0.40:96
chr15	79170757	rs144035412	ATTG	A	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	79177324	.	C	G	743.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:82,42:0.34:124
chr15	79177460	rs16970187	C	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr15	79215568	rs34577742	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr15	79217690	rs2044226	G	C	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr15	79221662	rs2289696	G	C	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=2.204;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr15	79223681	rs2289699	G	A	800.82	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr15	79224747	rs13345	C	T	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:19,68:0.78:87
chr15	79225813	rs3837715	CT	C	3194.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:51,100:0.66:151
chr15	79229644	rs62013199	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr15	79231518	rs11638844	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=1.381;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr15	79231523	rs35398112	G	GA	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.617;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr15	79237180	rs1036937	C	A	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.556;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:124,44:0.26:168
chr15	79237247	rs1036938	C	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:118,50:0.30:168
chr15	79237324	rs1036939	C	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.979;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr15	79237403	rs67943698	GGA	G	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	79254480	rs4778732	T	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	79264097	rs4238514	G	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	79265866	rs3743195	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr15	79273098	rs2278650	C	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr15	79277150	rs3840034	A	AC	432.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr15	79277247	rs4778750	A	C	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	79277298	rs3803544	T	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:123,50:0.29:173
chr15	79277511	rs2230518	A	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:100,64:0.39:164
chr15	79277608	rs4778751	G	A	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	79288011	rs6495359	A	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	79291262	rs12914556	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr15	79310288	rs2304994	G	A	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	79317602	rs2304992	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr15	79324419	rs2304991	A	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	79327686	rs736554	C	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	79350624	rs16970524	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr15	79502096	rs12903401	G	C	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	79586361	rs8038778	T	C	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:43,83:0.66:126
chr15	79606137	rs3825933	G	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	79606408	rs3784544	C	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	79614206	rs906440	T	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	79614418	rs906439	A	G	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr15	79675301	rs9302288	T	C	6903.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr15	79750307	rs1004724	T	C	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.143;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.498;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:45,29:0.39:74
chr15	79755604	rs2297773	A	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:104,48:0.32:152
chr15	79755685	rs3831283	GGT	G	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.162;QD=3.62;ReadPosRankSum=-0.145;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr15	80191343	rs7257	G	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.769;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:102,38:0.27:140
chr15	80191488	rs12440609	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=1.057;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr15	80215300	rs2733102	T	C	6534.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:164,284:0.63:448
chr15	80215597	rs2303824	G	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:106,59:0.36:165
chr15	80216015	rs3803540	C	A	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=1.089;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:132,59:0.31:191
chr15	80365745	rs2866367	T	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=-1.501;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	80367831	rs2469600	G	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	80405098	rs12594035	C	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.174;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:161,45:0.22:206
chr15	80413994	rs12915043	A	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr15	80414173	rs1522636	C	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr15	80415304	rs72630427	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr15	80445292	rs112474268	G	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr15	80445513	rs376322780	GGGAGT	G	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=4.978;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=3.416;QD=5.40;ReadPosRankSum=-1.635;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:74,40:0.35:114
chr15	80450328	rs1370276	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	80450389	rs1370275	G	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr15	80452013	rs35880073	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr15	80452075	rs1370274	T	C	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	80452172	rs33929922	G	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr15	80452268	rs1370273	G	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	80452886	rs733679	T	G	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr15	80452943	rs2014531	G	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr15	80454745	rs2114716	T	C	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr15	80460524	rs1545119	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	80460576	.	G	GT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.288;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:47,23:0.33:70
chr15	80465248	rs58363292	GA	G	1093.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr15	80472431	rs2043691	C	A	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:20,70:0.78:90
chr15	80478587	rs369845634	GCACC	G	1059.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:54,30:0.36:84
chr15	80478593	.	C	CTTTG	1101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=1.490;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:54,30:0.36:84
chr15	80478599	rs200464452	AC	A	1046.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr15	80478645	rs1049194	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr15	80736682	rs79968897	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.819;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.634;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr15	80736696	rs72238944	GGT	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.175;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr15	80845136	rs3924894	CT	TC	3877.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	0/1:63,99:0.61:162
chr15	80867480	rs72732083	G	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.909;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:99,31:0.24:130
chr15	80867529	rs72732084	T	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:66,26:0.28:92
chr15	80884025	rs4072568	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:97,80:0.45:177
chr15	80884171	rs3935130	C	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr15	80886191	rs8033706	T	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	80987812	rs62007944	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	81180981	rs8028511	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr15	81199236	rs2271164	A	G	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.539;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=6.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=1.063;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:9,40:0.82:49
chr15	81212608	rs1553647	G	A	8118.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr15	81214611	rs2271162	A	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr15	81217848	rs2271163	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	81234741	rs1553646	C	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	81294774	rs11541231	G	C	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:125,65:0.34:190
chr15	81426539	rs2683255	G	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	81430287	rs60867938	C	CA	69.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	81440147	rs11395672	C	CA	440.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr15	81578139	rs4072111	C	T	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:60,119:0.66:179
chr15	81582406	rs11632576	G	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr15	81582868	rs8031107	G	A	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=1.336;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:28,37:0.57:65
chr15	81584389	rs4072680	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr15	81584925	rs61752774	C	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr15	81600995	rs4238526	A	G	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	81616177	rs148236522	C	CT	1070.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr15	81624768	rs4417518	C	T	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	81625385	rs11636318	C	T	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	81631681	rs4489964	C	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	81636267	rs7161991	C	T	5481.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr15	81637284	rs4278705	G	A	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	81649001	rs7167034	T	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	81651624	rs55904609	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr15	81651651	rs12903128	G	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr15	81654757	rs5814058	T	TG	315.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr15	81660718	rs7162538	A	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,54:0.64:85
chr15	81660812	rs55873314	C	CT,CTACTACTCT	622.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	0/1:0.80:20
chr15	81660814	.	C	CTACTCTACT,CT	622.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=20;set=Intersection	GT:AF:DP	0/1:0.80:20
chr15	81665021	rs76902501	T	A	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=1.878;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:16,42:0.72:58
chr15	81665211	rs71708360	CGT	C	169.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.78;ReadPosRankSum=1.383;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	81666431	rs77997646	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr15	81666529	rs11634486	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=1.564;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr15	82335444	rs11073028	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.96;SOR=3.981;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	82387862	rs3087595	G	C	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:40,74:0.65:114
chr15	82387951	rs1969090	G	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr15	82431219	rs2457497	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	82443939	rs4725	G	A	5305.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:39,219:0.85:258
chr15	82444437	rs905450	A	G	12179.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr15	82444663	rs2292071	T	C	5350.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:37,216:0.85:253
chr15	82456227	rs1128431	T	C	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:35,177:0.83:212
chr15	82512429	rs2292189	C	G	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:15,93:0.86:108
chr15	82517649	.	T	TA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=3.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.460;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr15	82545214	rs4344697	A	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:7,87:0.93:94
chr15	82558034	rs3858954	G	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr15	82574461	rs76375505	C	T	4804.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:37,194:0.84:231
chr15	82890961	rs200122594	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	83215251	rs1267657	T	C	4774.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:39,206:0.84:245
chr15	83224696	rs1145171	C	T	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	83230904	rs66642827	CT	C	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=3.111;QD=1.97;ReadPosRankSum=1.662;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:170,69:0.29:239
chr15	83240293	rs783544	A	C	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:27,190:0.88:217
chr15	83241876	rs3809507	A	G	4452.80	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:22,190:0.90:212
chr15	83297138	rs10400906	C	T	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:36,173:0.83:209
chr15	83328542	rs11635442	C	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=1.162;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:347,53:0.13:400
chr15	83330584	rs184007787	C	T	4175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.33;ReadPosRankSum=0.723;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:36,180:0.83:216
chr15	83331155	rs2278355	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr15	83334128	.	AACACACACACACACACACACACACAC	A	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-1.595;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr15	83334419	rs7494860	T	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-1.241;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:97,18:0.16:115
chr15	83346018	rs3217364	TC	T	8035.73	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:50,253:0.83:303
chr15	83395340	rs11633991	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-0.190;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:338,51:0.13:389
chr15	83441012	rs1105287	C	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=1.310;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:105,18:0.15:123
chr15	83447631	rs4779061	T	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.497;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:193,39:0.17:232
chr15	83561606	rs41310978	A	G	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr15	83677270	rs373204607	CA	C	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.859;QD=1.16;ReadPosRankSum=-1.521;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:138,44:0.24:182
chr15	83680439	rs147639630	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr15	83735449	rs66531444	AGCCCG	A	958.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	83808031	.	TA	T	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=6.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.693;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:100,32:0.24:132
chr15	84257351	rs7182482	G	A	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:17,133:0.89:150
chr15	84277839	rs76851398	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.220;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr15	84324441	rs2730080	G	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.366;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:190,41:0.18:231
chr15	84373319	rs3079595	C	CAG	3598.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	84373370	rs890309	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr15	84473325	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=7.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=1.948;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr15	84473531	rs7179507	G	A	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	84488529	rs4583200	T	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.964;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr15	84488636	rs4483821	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=4.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.073;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:108,20:0.16:128
chr15	84539619	rs4144691	C	G	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.426;QD=0.82;ReadPosRankSum=0.173;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:215,37:0.15:252
chr15	84554018	rs8028931	G	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.030;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:67,12:0.15:79
chr15	84568504	rs6603004	A	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.108;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:354,66:0.16:420
chr15	84581904	rs4842923	T	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=1.401;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:180,33:0.15:213
chr15	84582124	rs4842838	G	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.484;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.318;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:207,39:0.16:246
chr15	84611630	rs12901723	G	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=1.645;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:227,55:0.20:282
chr15	84611805	rs61752778	C	T	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:24,165:0.87:189
chr15	84651185	rs8031704	C	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=4.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-2.547;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:173,24:0.12:197
chr15	84651290	rs7176737	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.309;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:347,54:0.13:401
chr15	84706461	rs950169	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=2.657;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:206,38:0.16:244
chr15	84722521	rs1818950	A	G	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.531;QD=2.02;ReadPosRankSum=1.579;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:277,63:0.19:340
chr15	84749815	.	C	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.487;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=4.285;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.434;QD=0.84;ReadPosRankSum=1.305;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:117,20:0.15:137
chr15	84758840	rs1567086	A	G	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	84770946	rs28474939	A	G	4558.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:24,185:0.89:209
chr15	84782417	rs11638297	A	C	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.393;QD=0.63;ReadPosRankSum=-1.416;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:363,54:0.13:417
chr15	84784964	rs11637158	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	84790476	rs2659154	T	C	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:21,92:0.81:113
chr15	84950209	rs10152249	T	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.82;MQRankSum=0.306;QD=1.16;ReadPosRankSum=-1.366;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:68,12:0.15:80
chr15	85149771	rs2271433	G	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.209;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:240,40:0.14:280
chr15	85159397	rs10083683	C	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-0.975;QD=1.16;ReadPosRankSum=-0.218;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr15	85175102	rs2121452	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=3.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=2.368;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:181,27:0.13:208
chr15	85186637	rs510875	G	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	85186876	rs11267906	ACTTGGCTCCGTGTTCCAT	A	9991.73	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:49,243:0.83:292
chr15	85188994	rs2271432	T	C	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.898;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:524,101:0.16:625
chr15	85189464	rs2271431	T	G	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-1.028;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:233,48:0.17:281
chr15	85201419	rs12904605	T	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:29,7:0.19:36
chr15	85235757	rs12900890	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=0.216;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:66,11:0.14:77
chr15	85259053	rs6496355	C	A	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	85333953	rs2241645	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.729;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:392,67:0.15:459
chr15	85340993	.	C	A	9122.77	.	AC=1;AF=0.500;AN=2;DP=426;set=Intersection	GT:AD:AF:DP	0/1:69,354:0.84:423
chr15	85382193	rs1896864	C	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-2.277;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:99,21:0.17:120
chr15	85383145	rs3803403	C	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.461;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:143,30:0.17:173
chr15	85383640	rs3803405	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.638;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:172,30:0.15:202
chr15	85383839	rs3803406	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-0.508;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:309,45:0.13:354
chr15	85401259	rs306197	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-2.768;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:121,30:0.20:151
chr15	85401419	rs167379	T	C	7342.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr15	85407564	rs2289138	A	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.679;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.358;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:50,8:0.14:58
chr15	85411482	.	A	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DP=408;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.217;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:346,61:0.15:407
chr15	85432117	rs8187746	G	A	2424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=0.240;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:23,109:0.83:132
chr15	85438118	rs7166433	T	G	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:21,122:0.85:143
chr15	85448906	rs2290269	C	T	3128.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:29,129:0.82:158
chr15	85461851	rs8187763	C	T	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:37,252:0.87:289
chr15	85467207	rs3825875	T	C	8361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=0.043;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:61,364:0.86:425
chr15	85469711	rs2343674	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.215;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr15	85476441	rs2305367	G	A	9203.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:78,407:0.84:485
chr15	85478153	rs7163966	G	T	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	85478410	rs2242048	A	G	9823.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr15	85478729	rs2242046	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.538;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:246,42:0.15:288
chr15	85487960	rs11479919	GC	G	22500.73	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr15	85488298	rs62021453	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.422;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:123,16:0.12:139
chr15	85488572	rs8025045	T	G	3132.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	85504753	rs111460093	G	C	1235.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.86;ReadPosRankSum=-0.892;SOR=0.278;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr15	85504762	rs112431612	A	T	1185.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.89;ReadPosRankSum=-0.738;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr15	85619248	rs11631548	C	T	2931.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:21,123:0.85:144
chr15	85632728	.	A	AT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.848;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr15	85633845	rs17540307	A	G	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:17,83:0.83:100
chr15	85656568	rs2304422	A	G	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:18,102:0.85:120
chr15	85659150	rs71466073	C	CAA	1184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.011;QD=14.81;ReadPosRankSum=-0.198;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,59:0.74:80
chr15	85664280	rs142004997	CTCTT	C	1077.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;MQ=61.45;set=Intersection	GT:AD:AF:DP	0/1:3,29:0.91:32
chr15	86029097	rs11856869	C	G	1227.78	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:5,43:0.90:48
chr15	86063681	rs11634589	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr15	86064870	rs143785838	TA	T	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.099;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:81,17:0.17:98
chr15	86076749	rs62023885	T	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.158;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:128,20:0.14:148
chr15	86087212	rs7162720	C	T	14138.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr15	86087309	rs2291049	T	C	11287.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.050;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr15	86098507	rs7180143	G	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	86098641	.	C	T	4796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=3.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.70;ReadPosRankSum=2.425;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:99,122:0.55:221
chr15	86098644	.	C	T	4841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.71;ReadPosRankSum=-0.537;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:96,127:0.57:223
chr15	86098647	rs7164821	T	C	8359.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr15	86098743	.	C	G	1626.77	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr15	86098748	.	C	CTGGGCGTTGAACTGGTCAAAAGAGCAGGCAACACCCTGTCTTGACCGTGAGTACAAACCGAGATAT	1554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-4.826;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:68,50:0.42:118
chr15	86122529	rs139682746	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=1.404;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:163,27:0.14:190
chr15	86122654	rs2061821	T	C	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	86122779	rs2061822	T	C	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	86122916	rs2061823	T	C	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr15	86123019	rs2061824	C	T	7564.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	86123364	rs7177107	G	A	13304.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr15	86123833	rs4075256	T	C	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr15	86123924	rs4075255	C	T	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	86123988	rs4075254	G	A	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	86124419	rs4843073	C	T	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	86124483	rs4843074	C	G	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr15	86124555	rs4843075	G	A	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	86124946	rs7162168	T	C	8725.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr15	86124968	rs11633087	G	A	9463.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr15	86125031	rs7178065	G	A	9061.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	86129201	rs931082	T	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	86181286	rs201112050	A	AT	201.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	86182856	rs35727345	C	CT	722.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	86189006	rs71468130	G	GT	523.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=0.310;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr15	86213172	rs338523	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	86235235	rs16943251	T	G	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	86253768	rs8037947	T	A	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	86253911	rs8038249	T	G	10889.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr15	86265644	rs7179917	G	A	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	86278174	rs2241267	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	86278395	rs17638180	A	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	86278479	rs16943741	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	86284817	rs13511	T	C	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	86287910	rs11073517	C	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	86311593	rs8041288	C	A	16785.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:95,703:0.88:798
chr15	86312294	rs35582838	C	T	6884.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:36,280:0.89:316
chr15	86313048	rs2614657	T	C	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	86313622	rs62025272	G	A	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	86368835	rs4627292	A	G	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	86368898	rs4414449	G	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	86368959	rs4577031	A	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	86369050	rs72757332	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	86768264	rs35578252	CT	C	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.945;QD=4.97;ReadPosRankSum=0.756;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:60,49:0.45:109
chr15	86800209	rs1353578	C	T	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	86806029	rs1566088	C	T	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr15	86807761	rs10520618	A	G	8004.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr15	86809807	rs8041327	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	86814654	rs11852354	T	G	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	86814866	rs11858435	A	G	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	87217488	rs11853730	T	C	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:26,160:0.86:186
chr15	87217613	rs8028043	A	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	87217721	rs11856329	C	G	387.18	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr15	87531281	rs1006030	A	C	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr15	88423463	rs1560975	C	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:13,84:0.87:97
chr15	88428702	rs2117655	C	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	88576185	rs2229910	G	C	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	88669382	rs3825882	G	C	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:29,126:0.81:155
chr15	88679785	rs1863480	G	A	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	88690736	rs66493620	CCTT	C	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=0.155;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr15	88726586	rs55725904	G	A	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	89056040	rs13835	C	A	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	89071124	rs34611303	A	AAAC	2761.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=40.61;SOR=2.602;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chr15	89151262	rs2350271	T	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr15	89155270	rs12908122	A	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr15	89169614	rs3743476	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.233;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:190,32:0.14:222
chr15	89169858	rs8027765	A	G	13976.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr15	89172352	rs3826040	C	T	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	89172558	rs3743475	G	C	13613.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,508:1.00:508
chr15	89173136	rs3826039	A	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-2.003;SOR=0.017;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr15	89173556	rs17777460	C	T	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:12,110:0.90:122
chr15	89173657	rs3826038	A	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	89174509	rs11559060	C	T	2043.96	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:9,79:0.90:88
chr15	89182596	rs3200942	A	G	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	89193584	rs8041679	G	C	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	89195526	rs1137166	A	G	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	89386543	rs11324188	AG	A	6460.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=31.36;SOR=1.360;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr15	89391160	rs2272023	C	A	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	89392745	rs1568116	T	C	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr15	89398105	rs2351491	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=4.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.802;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:313,75:0.19:388
chr15	89398330	rs3743399	G	A	21778.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:0,777:1.00:777
chr15	89398553	rs35430524	C	A	7221.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:34,293:0.90:327
chr15	89398605	rs938608	G	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.364;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:262,36:0.12:298
chr15	89398631	rs938609	T	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.679;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:247,29:0.11:276
chr15	89400339	rs2882676	A	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.832;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:118,23:0.16:141
chr15	89401109	rs4932439	A	G	8189.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr15	89401615	rs3825994	T	G	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	89402051	rs1042630	A	G	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	89402239	rs1042631	T	C	11162.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr15	89402596	rs698621	T	G	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.228;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:490,82:0.14:572
chr15	89430506	rs3743395	C	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.325;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:139,34:0.20:173
chr15	89436167	rs59440069	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:20,81:0.80:101
chr15	89436244	rs8024779	T	C	8994.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr15	89436295	rs8039131	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.140;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:349,55:0.14:404
chr15	89436375	rs58786421	A	G	3807.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:24,169:0.88:193
chr15	89436407	rs191986737	G	A	2668.89	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:12,104:0.90:116
chr15	89442606	rs2280214	C	T	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:11,84:0.88:95
chr15	89444760	rs2015495	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	89450546	rs1878327	C	T	11088.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr15	89450587	rs1878326	G	T	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr15	89456306	rs35936125	C	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr15	89456356	rs3743387	G	C	432.81	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr15	89456544	rs4945	G	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr15	89734466	rs2239287	G	A	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	89758552	rs4932483	A	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	89816742	.	T	TA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=5.930;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.607;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr15	89817689	rs11073853	G	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	89838236	rs7183618	G	A	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr15	89856047	rs11321073	TA	T	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.842;QD=8.86;ReadPosRankSum=-0.022;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr15	90029828	rs4032797	A	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=7.474;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-0.771;QD=1.30;ReadPosRankSum=1.801;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:58,10:0.15:68
chr15	90029830	rs28385443	A	T	1014.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;QD=28.99;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr15	90118767	rs56144360	G	A	3809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=21.77;ReadPosRankSum=0.565;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:24,151:0.86:175
chr15	90126121	rs10775247	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.393;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:345,58:0.14:403
chr15	90128799	rs893724	T	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	90128834	rs11639246	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.264;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:84,15:0.15:99
chr15	90128910	rs893723	T	C	5499.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:41,230:0.85:271
chr15	90128966	rs11629584	C	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.410;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.402;QD=1.21;ReadPosRankSum=1.010;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:350,61:0.15:411
chr15	90129188	rs1540504	T	C	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	90129227	rs1540503	A	C	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	90135172	rs35892197	C	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=9.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.223;SOR=0.058;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr15	90135196	rs8041127	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	90135432	rs34494298	A	G	5728.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr15	90138670	rs8042146	C	T	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	90138926	rs16974170	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr15	90144851	rs4932233	T	C	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	90144894	rs4932234	T	C	4609.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	90144944	rs4244876	G	A	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	90159575	rs56036125	T	C	5050.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:35,214:0.86:249
chr15	90161355	rs2289486	G	A	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	90168108	rs894157	C	T	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	90168693	rs1866928	T	A	5372.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:40,223:0.85:263
chr15	90169331	rs55653159	A	G	6565.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:57,283:0.83:340
chr15	90170237	rs3743372	C	T	2983.41	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:16,124:0.89:140
chr15	90172133	rs12914042	C	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=11.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=0.024;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:136,18:0.12:154
chr15	90172419	.	GGGGTGGGGGCTGTGGGCTGGGT	G	1675	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=4;HapScore=1;MGOF=21;MMLQ=24;MQ=55.77;NF=1;NR=1;PP=1675;QD=850.5;SC=CAGGGCTGTGGGGGTGGGGGC;SbPval=0.33;Source=Platypus;TC=11;TCF=2;TCR=9;TR=2;WE=90172448;WS=90172409;set=Platypus	GT:AD:AF:DP	1/0:9,2:0.18:11
chr15	90172600	rs74251725	G	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:12,64:0.84:76
chr15	90172834	rs72750748	T	G	13182.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:96,576:0.86:672
chr15	90173734	rs35820949	C	CAG	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.551;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.423;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:46,7:0.13:53
chr15	90174789	rs9672286	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.039;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:122,28:0.19:150
chr15	90174824	rs12900805	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.761;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:156,37:0.19:193
chr15	90174955	rs9672296	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.319;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:144,24:0.14:168
chr15	90176432	rs3803531	T	G	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr15	90177157	rs894156	C	T	6206.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:37,278:0.88:315
chr15	90188514	rs894159	A	G	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr15	90191827	rs8037349	T	C	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	90192905	rs4932240	T	C	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	90195712	rs11634571	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.167;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.791;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:132,36:0.21:168
chr15	90195765	rs11630003	AA	GG	15811.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr15	90195967	rs8179066	C	G	9009.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr15	90196008	rs8179065	C	T	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:52,261:0.83:313
chr15	90208310	rs1052700	A	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,42:0.82:51
chr15	90211047	rs894162	A	T	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	90213134	rs2304794	T	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	90213229	rs6496589	G	C	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	90214948	rs1077903	C	A	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	90226947	rs7169981	C	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.060;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:206,40:0.16:246
chr15	90233969	rs8029037	G	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr15	90248819	rs17238056	A	T	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:13,73:0.85:86
chr15	90258144	rs17238390	C	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr15	90273040	rs16943559	C	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:14,74:0.84:88
chr15	90273070	rs12148067	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:9,53:0.85:62
chr15	90274639	rs5814401	T	TG	4026.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:33,147:0.82:180
chr15	90281045	rs11638276	C	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.116;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:78,12:0.13:90
chr15	90286679	rs146296299	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.676;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr15	90293776	rs2305441	A	C	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:10,49:0.83:59
chr15	90293794	rs2305440	G	C	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,50:0.83:60
chr15	90294306	rs6496598	C	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr15	90308026	rs35308090	G	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr15	90308061	rs34284515	T	G	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=-1.250;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr15	90308110	rs34936212	A	G	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=-0.124;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr15	90308166	rs72754547	A	C	150.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.10;ReadPosRankSum=-1.834;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr15	90308194	rs72754548	G	A	230.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.19;ReadPosRankSum=-1.456;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr15	90308231	rs62023459	A	T	254.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr15	90308253	rs62024160	G	A	314.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	90308305	rs62024161	T	C	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	90320120	rs200021459	GAGGGGCAGGGGCAAGGGCAGGGGC	G	216.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:128,16:0.11:144
chr15	90320134	rs199821487	AGGGCAGGGGCAG	A	4705.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:18,127:0.88:145
chr15	90328551	rs10584	G	C	4540.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:34,195:0.85:229
chr15	90328774	rs71464487	A	AAC	4174.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:12,106:0.90:118
chr15	90333851	rs17239917	G	A	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:20,104:0.84:124
chr15	90393808	rs4932252	G	C	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr15	90393949	rs11435035	C	CT	630.94	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:5,35:0.88:40
chr15	90414642	rs3759831	C	G	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	90420673	rs12440156	G	A	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr15	90437301	rs3784388	C	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.183;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:264,39:0.13:303
chr15	90455940	rs1256836	G	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-1.050;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr15	90610807	rs74038806	C	A	13141.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:84,543:0.87:627
chr15	90623052	rs2970357	T	C	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:23,96:0.81:119
chr15	90634684	rs11316815	CG	C	7718.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	90634691	.	G	C	4245.77	.	AC=1;AF=0.500;AN=2;DP=195;set=Intersection	GT:AD:AF:DP	0/1:31,164:0.84:195
chr15	90634941	rs10852126	A	G	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	90634994	rs34936041	GC	G	1708.74	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:4,53:0.93:57
chr15	90744960	rs11547964	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr15	90758151	rs10083685	C	T	5788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=1.068;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:45,255:0.85:300
chr15	90760991	rs1543116	T	C	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.987;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.797;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:564,90:0.14:654
chr15	90761136	rs1543115	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.398;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.279;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:151,27:0.15:178
chr15	90763285	rs3751658	C	A	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:10,156:0.94:166
chr15	90764203	rs3825998	C	A	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:24,166:0.87:190
chr15	90764219	rs4932305	G	A	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:35,203:0.85:238
chr15	90764348	rs3825999	C	G	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr15	90764357	rs3826000	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.007;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.16;ReadPosRankSum=-0.271;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:221,27:0.11:248
chr15	90764359	rs3826001	T	G	7080.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr15	90765093	rs66795544	CG	C	4224.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	90765104	rs35147120	A	G	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	90766754	rs908048	A	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	90768156	rs1040083	A	G	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	90768271	rs11547966	C	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.558;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:339,77:0.19:416
chr15	90768959	rs908044	A	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=6.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.520;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:215,36:0.14:251
chr15	90771060	rs2271553	C	A	7457.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr15	90771704	rs3751656	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.606;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:384,58:0.13:442
chr15	90771750	rs3751655	T	G	10304.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr15	90772156	rs11547961	A	G	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.638;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.716;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr15	90772200	rs1044246	G	A	3832.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:43,149:0.78:192
chr15	90772831	rs7024	C	T	11625.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr15	90773782	rs2073706	C	T	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	90774259	rs1044813	G	C	4918.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:32,194:0.86:226
chr15	90774447	rs34604050	TAGAG	T	27942.73	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr15	90775397	rs2073703	G	A	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	90775700	rs4628940	G	A	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	90784045	.	C	CA	248	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=11;HapScore=3;MGOF=17;MMLQ=23;MQ=59.37;NF=10;NR=5;PP=248;QD=17.1333333333;SC=GACTCCATCTCAAAAAAAAAA;SbPval=0.8;Source=Platypus;TC=50;TCF=29;TCR=21;TR=15;WE=90784065;WS=90784035;set=Platypus	GT:AD:AF:DP	1/0:35,15:0.30:50
chr15	90784057	rs113126276	T	A	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=1.561;QD=7.48;ReadPosRankSum=0.899;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr15	90784207	rs7166441	A	G	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	90784250	rs7171194	T	C	7532.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr15	90794102	rs4932171	G	A	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=-0.661;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:16,80:0.83:96
chr15	90794188	rs4932309	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr15	90794757	rs4357917	T	G	7619.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:65,325:0.83:390
chr15	90794845	rs2882858	G	A	5410.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:37,231:0.86:268
chr15	90796558	rs12912620	G	A	5423.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:31,236:0.88:267
chr15	90796704	rs12914094	C	T	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:30,144:0.83:174
chr15	90798953	rs2063739	C	T	5164.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:38,223:0.85:261
chr15	90799282	rs1996179	A	G	2348.28	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:11,93:0.89:104
chr15	90800293	rs2063741	G	A	6006.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:40,257:0.87:297
chr15	90800408	rs2063742	C	G	8905.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:60,373:0.86:433
chr15	90800449	rs2063743	C	T	7313.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:57,323:0.85:380
chr15	90801248	rs2048706	C	A	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:18,183:0.91:201
chr15	90801584	rs2048707	G	C	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:25,113:0.82:138
chr15	90805084	rs12592600	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	90806029	rs78960146	T	C	1589.79	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:5,57:0.92:62
chr15	90806140	rs9920862	G	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.766;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:90,17:0.16:107
chr15	90809633	rs9635390	G	A	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr15	90818400	rs4533265	A	T	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:20,93:0.82:113
chr15	90818469	rs12595409	C	T	4036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=-0.969;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:33,171:0.84:204
chr15	90818641	rs56294733	G	C	8146.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:65,324:0.83:389
chr15	90818827	rs4595780	G	A	7536.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:60,324:0.84:384
chr15	90891982	rs3803539	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr15	90892293	rs2589973	C	T	5092.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:27,188:0.87:215
chr15	90892585	rs7162211	G	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:4,60:0.94:64
chr15	90897885	rs8042825	G	C	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:24,92:0.79:116
chr15	90897952	rs8023776	C	T	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:19,92:0.83:111
chr15	90898527	rs16944254	C	T	4920.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:32,209:0.87:241
chr15	90902293	rs10548073	AT	A	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=1.154;QD=1.34;ReadPosRankSum=0.709;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr15	90903311	rs2589957	A	G	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:30,179:0.86:209
chr15	90905980	rs199859238	TAC	T	333.76	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.516;QD=20.86;SOR=2.381;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr15	90931457	rs2589941	C	T	3231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=-1.627;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:30,152:0.84:182
chr15	90931720	rs111592783	G	A	405.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.51;ReadPosRankSum=2.637;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr15	90969195	rs2301827	A	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr15	90969335	rs2256388	G	T	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:39,135:0.78:174
chr15	90976811	rs67352281	TGAATGCCACCGATGTTTTCTAA	T	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=6.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=2.048;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:96,14:0.13:110
chr15	90982756	rs6496675	C	T	1547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.64;ReadPosRankSum=-1.625;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:10,65:0.87:75
chr15	90983706	rs8027211	T	C	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:20,105:0.84:125
chr15	90992687	rs2301829	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr15	91009147	rs2074581	T	G	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:8,52:0.87:60
chr15	91009177	rs2074582	A	G	3771.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:17,89:0.84:106
chr15	91009192	rs2074583	T	C	4148.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:19,112:0.85:131
chr15	91009381	rs2074584	G	A	6811.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:43,279:0.87:322
chr15	91009484	rs2074585	G	A	5709.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:43,236:0.85:279
chr15	91010776	rs1505936	T	C	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,74:0.84:88
chr15	91017232	rs1145325	G	A	9046.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr15	91017274	rs10657378	T	TTTC	7849.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:47,191:0.80:238
chr15	91026477	rs8040585	T	C	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.78;ReadPosRankSum=-1.761;SOR=2.753;set=HC	GT:AD:AF:DP	0/1:11,45:0.80:56
chr15	91037754	rs28516870	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	91040725	rs2301832	A	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.311;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:83,13:0.14:96
chr15	91043183	rs201766044	ACTGT	A	1798.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,44:0.80:55
chr15	91043192	rs72311245	ATGTTTTGTTT	A,ATTGTTT	2665.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=72;set=Intersection	GT:AF:DP	1/2:0.18,0.82:66
chr15	91043197	.	T	A	1807.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr15	91073464	rs139118057	GCGGCCA	G	5150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=61.03;MQRankSum=1.160;QD=37.06;ReadPosRankSum=0.340;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:11,128:0.92:139
chr15	91083186	rs7174198	C	T	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:27,120:0.82:147
chr15	91162945	rs147910113	A	T	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:23,115:0.83:138
chr15	91168976	rs3743405	T	C	3618.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:22,143:0.87:165
chr15	91185485	rs2286287	A	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr15	91294897	rs7183841	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr15	91358271	rs10685387	G	GGAA	4645.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:13,110:0.89:123
chr15	91419432	rs11372849	T	TC	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.196;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.265;QD=2.08;ReadPosRankSum=0.695;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:116,23:0.17:139
chr15	91423543	rs6224	G	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.161;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr15	91424574	rs6226	G	C	26704.77	.	AC=2;AF=1.00;AN=2;DB;DP=976;set=Intersection	GT:AD:AF:DP	1/1:0,972:1.00:972
chr15	91428290	rs11539637	C	T	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:23,102:0.82:125
chr15	91428589	rs7183988	T	G	6113.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:61,253:0.81:314
chr15	91428636	rs7177338	G	A	5641.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:56,258:0.82:314
chr15	91430436	rs2071383	T	C	22867.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:0,834:1.00:834
chr15	91430617	rs2071384	G	A	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:25,118:0.83:143
chr15	91430647	rs28438927	A	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-1.094;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:80,20:0.20:100
chr15	91432707	rs111693762	G	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.852;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.293;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:243,39:0.14:282
chr15	91433265	rs4932376	C	G	6627.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:47,274:0.85:321
chr15	91435422	rs12909124	G	A	3590.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:18,144:0.89:162
chr15	91436525	rs143228307	C	A	4313.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:21,156:0.88:177
chr15	91452835	rs147151470	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.485;QD=2.39;ReadPosRankSum=1.020;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr15	91483531	rs17593423	C	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:14,72:0.84:86
chr15	91523742	rs35250469	CT	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.227;QD=1.35;ReadPosRankSum=-0.023;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:35,18:0.34:53
chr15	91524841	rs7172758	G	T	13445.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr15	91537820	rs113028686	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=0.542;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:267,48:0.15:315
chr15	91544539	.	C	CA	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.072;QD=0.84;ReadPosRankSum=-1.332;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:131,43:0.25:174
chr15	92432263	.	C	CA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.562;QD=3.13;ReadPosRankSum=0.117;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr15	92484837	rs8027174	G	T	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	92638193	rs2286355	G	A	5893.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:18,232:0.93:250
chr15	92638326	.	GCCTCT	G	2197.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.30;ReadPosRankSum=0.473;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:11,55:0.83:66
chr15	92638331	.	T	TGAG	2197.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.30;ReadPosRankSum=0.775;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:11,55:0.83:66
chr15	92638332	.	GT	G	2954	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=28;MQ=60.0;NF=0;NR=31;PP=2954;QD=20;SC=CCCTGCCTCTGTAGCTGGGGC;SbPval=1.0;Source=Platypus;TC=39;TCF=0;TCR=39;TR=31;WE=92638340;WS=92638317;set=Platypus	GT:AD:AF:DP	0/1:8,31:0.79:39
chr15	92638333	.	T	TG	2197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.88;ReadPosRankSum=0.671;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:11,52:0.83:63
chr15	92647645	rs1517618	G	C	16185.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr15	92647684	rs72655652	A	C	8540.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:59,377:0.86:436
chr15	92647834	rs917355	A	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	92663630	rs6496893	A	G	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr15	92937268	rs3743365	G	T	8349.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	92937276	rs3743364	C	T	8707.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr15	93007302	rs11399611	C	CT	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.302;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr15	93015427	rs1455773	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.047;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:172,22:0.11:194
chr15	93016128	rs13380006	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.868;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:174,34:0.16:208
chr15	93198670	.	C	CGCGGCCCGA	758.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=44.131;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.874;QD=8.93;ReadPosRankSum=0.913;SOR=5.865;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr15	93198671	rs501381	A	G	2200.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:23,61:0.73:84
chr15	93198672	.	C	CCCGAGCGCGAG	759.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.403;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=43.799;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.855;QD=9.04;ReadPosRankSum=-0.346;SOR=5.784;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr15	93198673	.	T	TC	744.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.442;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=37.281;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.773;QD=9.31;ReadPosRankSum=-0.967;SOR=5.421;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr15	93198676	.	T	G	590.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.286;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=38.412;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.793;QD=7.67;ReadPosRankSum=-2.199;SOR=5.594;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr15	93198677	.	G	GCCACCGCCCGGCCCGGGGCCCGGGAACACCACCCGATCCATTACA	581.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.915;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=38.412;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=-0.793;QD=7.55;ReadPosRankSum=-2.702;SOR=5.594;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr15	93198678	rs68056278	TTGGAGC	T	2119.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:4,56:0.93:60
chr15	93198784	rs2438194	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=29.47;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	93306459	rs56099640	G	A	468.03	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr15	93306602	rs11634113	TG	CA	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;JOINED;MQ=59.78;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	93339219	rs7164758	T	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.032;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.446;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:244,48:0.16:292
chr15	93447631	rs1439619	T	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	93496874	rs1371390	C	T	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	93510603	rs4777755	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	93515798	.	G	GA	914.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=41.58;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	93515801	.	G	GTCTTAATTTTTACTTGCATGCCTTTAGGCTACCATATGAAAGTGGTCATGAGGAGA	885.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	93518187	rs146944583	T	C	8300.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:64,347:0.84:411
chr15	93521604	rs11074121	A	G	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	93521651	rs11074122	T	G	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.09;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	93522312	rs2272461	G	A	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=1.503;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	93527794	rs2272459	A	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	93536197	rs2272457	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	93540089	rs11630582	T	C	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	93543907	rs147884853	A	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=2.192;SOR=1.362;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr15	93552330	rs12915582	C	T	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	93555717	rs2119010	A	G	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	93563661	rs964034	G	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	93567527	rs12905032	CC	TT	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	93567864	rs12906163	A	C	7885.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr15	93588264	rs4299103	G	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.253;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:125,21:0.14:146
chr15	93588289	rs4778078	G	A	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:24,171:0.88:195
chr15	93588336	rs4238485	A	C	8989.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr15	93595855	rs1997382	T	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr15	93609460	rs11074135	A	T	3685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.751;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=1.907;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:43,184:0.81:227
chr15	93609617	rs4778090	A	G	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	93616283	rs112633977	A	AAAG,AAGG	8892.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=231;set=Intersection	GT:AF:DP	1/2:0.16,0.84:219
chr15	93616933	rs55816698	C	G	24074.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:0,857:1.00:857
chr15	93616975	rs4598860	A	G	15891.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr15	93844616	rs12914371	T	A	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr15	93844762	rs12909691	C	T	3784.78	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:19,156:0.89:175
chr15	93844836	rs34239935	G	A	10625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.84;ReadPosRankSum=0.532;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:50,264:0.84:314
chr15	93844843	rs12914719	T	A	10461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.75;ReadPosRankSum=-1.102;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:52,258:0.83:310
chr15	94304132	rs12905790	C	T	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	94304189	rs12910750	T	C	9135.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr15	94410009	rs11857265	C	T	406.84	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr15	94410296	rs12908831	A	G	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:33,117:0.78:150
chr15	94857347	rs294553	T	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	94857890	rs294552	G	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	94858686	rs1655455	G	A	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr15	94859051	rs294550	C	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	94859068	rs294549	T	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	94882733	rs10686457	G	GACGT	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=1.565;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr15	94884108	rs8025851	G	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-2.070;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:134,20:0.13:154
chr15	94913190	rs35497644	A	AT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.679;QD=1.61;ReadPosRankSum=-0.637;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr15	94927493	rs3217405	AT	A	1123.27	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:6,49:0.89:55
chr15	94945324	rs6497203	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.484;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr15	94945704	rs7180682	A	G	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.092;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:406,52:0.11:458
chr15	94945719	rs7178698	G	T	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.368;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:470,56:0.11:526
chr15	94986135	rs117165439	G	C	5278.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:30,216:0.88:246
chr15	94986276	.	CT	C	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=5.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.150;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:78,35:0.31:113
chr15	96880510	.	A	ATTC	317.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr15	97940810	rs4076597	T	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr15	98301845	rs2048115	C	T	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	98302002	rs143322276	TAAC	T	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	98504100	rs4965046	G	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	98504322	rs112100339	C	T	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.921;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr15	98504326	rs12101554	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	98508735	rs55823836	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr15	98508736	rs55909216	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.390;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	98508942	rs80248174	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr15	98509063	rs61281998	C	CT	783.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr15	98512288	rs77329358	A	C	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=7.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.48;ReadPosRankSum=-1.399;SOR=0.076;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr15	98512294	rs78893610	T	C	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.736;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=11.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.52;ReadPosRankSum=-0.465;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr15	98512622	rs5814833	CT	C	564.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr15	98512676	rs75861391	G	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr15	98513087	rs199552180	T	TC	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.373;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr15	98514103	rs75444538	A	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	98514282	rs62023730	A	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:40,57:0.59:97
chr15	98514489	rs3803385	A	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr15	98995052	rs56374714	G	GT	2805.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	98995081	rs12101356	A	G	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	99192754	rs72419751	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.848;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr15	99456253	rs2272037	T	C	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	99465274	rs28637929	C	T	631.80	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr15	99472734	rs4486868	T	C	9644.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr15	99472734	.	TG	CA,CG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=120,141;NR=54,67;PP=2944,81;QD=20;SC=AGAAATGAAATGAGCAAATTG;SbPval=0.57;Source=Platypus;TC=214;TCF=146;TCR=68;TR=174,208;WE=99472743;WS=99472724;set=Platypus	GT:AF:DP	0/1:0.81:214
chr15	99472735	rs184302689	G	A	4827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.142;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.81;ReadPosRankSum=-2.015;SOR=1.180;set=HC	GT:AD:AF:DP	0/1:35,197:0.85:232
chr15	99477911	rs2715449	T	G	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	99478225	rs2229765	G	A	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	99478493	rs10400894	T	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	99478505	rs34389972	A	AC	1801.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	99478713	rs2293117	T	C	9545.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=-0.784;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:2,359:0.99:361
chr15	99492045	rs2684789	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=7.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-1.231;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:70,11:0.14:81
chr15	99511873	rs2715423	G	A	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:18,170:0.90:188
chr15	99544429	rs2593051	G	A	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr15	99646107	rs60530833	A	AG	1040.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	99653666	rs2305446	C	T	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	99653800	rs2305445	T	C	6775.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr15	99666979	rs5030691	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-2.148;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:299,49:0.14:348
chr15	99667524	rs260090	G	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.046;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:143,23:0.14:166
chr15	99670278	rs3134587	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.596;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:259,42:0.14:301
chr15	99670518	rs1670227	T	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.421;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:388,60:0.13:448
chr15	99670989	rs3743248	T	C	10752.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr15	99671760	rs260087	T	C	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr15	99672722	rs2292288	A	G	6912.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:39,283:0.88:322
chr15	99679489	rs34077294	GAGAT	G	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.964;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:91,13:0.12:104
chr15	99679830	rs260118	A	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.246;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:257,50:0.16:307
chr15	99701857	rs3803472	A	G	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:22,177:0.89:199
chr15	99715352	rs2602016	A	G	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr15	99798934	rs7162949	G	A	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:23,131:0.85:154
chr15	99799474	rs62023769	C	T	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.40;ReadPosRankSum=1.259;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:439,80:0.15:519
chr15	99799750	rs1976589	T	C	8209.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr15	99799860	rs78782813	C	T	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.320;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:361,74:0.17:435
chr15	99901749	rs3817147	C	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.301;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr15	100230908	rs325385	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	100243487	rs34131461	GT	G	2710.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	100246834	rs325409	T	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	100246936	rs325408	T	C	6139.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.93;ReadPosRankSum=2.123;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:2,226:0.99:228
chr15	100246942	rs325407	G	A	10464.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=1.213;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr15	100252892	rs34851361	A	G	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.807;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:275,50:0.15:325
chr15	100269309	rs6598263	T	G	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	100269796	rs6598264	A	G	7444.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr15	100271253	rs12185079	C	T	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	100271449	rs199881670	A	C	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:15,148:0.91:163
chr15	100272337	rs73466515	A	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	100330587	rs138586565	C	G	831.94	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr15	100330730	rs79063960	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-1.265;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr15	100331100	rs936037	A	G	1806.94	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:9,78:0.90:87
chr15	100331664	rs2002316	GC	TT	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,84:0.82:103
chr15	100331752	rs746071	C	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.898;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:91,18:0.17:109
chr15	100331800	rs2004045	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=7.786;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.960;QD=1.09;ReadPosRankSum=0.301;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:125,22:0.15:147
chr15	100331819	rs2958994	A	G	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=41.93;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	100331819	.	AGAGGA	GGAGGA,GGAGGC	2005	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=7;MMLQ=24;MQ=59.66;NF=88,74;NR=55,42;SC=CAAGCAACCCAGAGGACCTGG;SbPval=0.51;Source=Platypus;TC=143;TCF=88;TCR=55;TR=143,116;WE=100331832;WS=100331809;set=Platypus	GT:AF:DP	0/1:1.00:143
chr15	100331824	rs2004046	A	C	3191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.952;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-1.181;QD=20.73;ReadPosRankSum=2.120;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:25,129:0.84:154
chr15	100331961	rs1809156	A	G	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr15	100332215	rs76943657	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.563;QD=0.75;ReadPosRankSum=2.027;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:234,36:0.13:270
chr15	100332523	rs2077186	G	A	6596.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:43,255:0.86:298
chr15	100332835	rs137855402	C	G	7713.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:60,308:0.84:368
chr15	100332877	rs6598274	T	C	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:13,227:0.95:240
chr15	100332919	rs2603217	T	C	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	100333075	rs11634114	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.500;MQ=49.24;MQRankSum=0.540;QD=1.62;ReadPosRankSum=-1.353;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:75,16:0.18:91
chr15	100514561	rs2581340	G	C	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	100514614	rs2573652	T	C	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr15	100516472	rs11634977	G	A	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	100533218	rs7175995	C	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	100537494	rs12900132	C	T	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	100589181	rs61752831	G	A	5513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.20;ReadPosRankSum=-1.967;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:34,239:0.88:273
chr15	100603776	rs6598297	T	A	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	100672237	rs12907333	T	G	9751.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr15	100693032	rs10664668	C	CTT,CTTT	3109.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=6.606;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.000;QD=28.53;ReadPosRankSum=-2.646;SOR=1.799;set=HC	GT:AD:AF:DP	1/2:3,85,21:0.78,0.19:109
chr15	100695347	rs8024690	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=4.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.448;SOR=1.313;set=HC	GT:AD:AF:DP	0/1:133,19:0.12:152
chr15	100794172	rs7172834	T	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	100794363	rs4369638	C	T	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	100801698	rs4965613	G	A	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:21,98:0.82:119
chr15	100801965	rs6598316	G	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr15	100802495	rs4965296	G	A	2543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.47;ReadPosRankSum=0.162;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:14,62:0.82:76
chr15	100802499	rs4965297	A	G	2543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.61;ReadPosRankSum=-1.476;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:14,64:0.82:78
chr15	100821426	rs7496614	G	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:5,75:0.94:80
chr15	100821467	rs7496640	G	A	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:6,98:0.94:104
chr15	100821576	rs7496668	G	A	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:18,116:0.87:134
chr15	100821647	rs7497712	T	C	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:18,102:0.85:120
chr15	100871329	rs11639041	G	A	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:35,146:0.81:181
chr15	100889405	rs4965641	G	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.984;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:105,23:0.18:128
chr15	100889407	rs76220467	C	T	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-1.699;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:107,23:0.18:130
chr15	100889496	rs2289584	T	G	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	100890190	rs2289585	C	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.724;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.751;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:305,50:0.14:355
chr15	100942843	rs1023782	G	T	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	100942962	rs2439928	T	C	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	100996038	rs12595207	C	T	7556.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr15	101009474	rs34108242	A	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	101009530	rs12909732	G	A	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	101019529	rs2654574	C	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	101019819	rs2587763	G	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	101041896	rs1354332	T	C	6085.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	101112342	rs1493652	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	101113700	rs34816737	C	CT	174.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.539;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr15	101113862	rs12719734	C	T	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	101114482	rs34231390	AAC	A	1774.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	101115448	rs4965678	C	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	101152745	rs4965683	A	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	101425703	rs4646656	T	C	1058.89	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:5,45:0.90:50
chr15	101436307	rs4646669	C	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chr15	101440988	rs4646674	A	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.335;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:152,22:0.13:174
chr15	101447588	rs4646684	A	G	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=2.046;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr15	101448783	rs4646687	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.864;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:109,20:0.16:129
chr15	101527052	rs1551467	A	G	7437.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:49,314:0.87:363
chr15	101527096	rs1551466	G	C	4969.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:28,199:0.88:227
chr15	101527411	rs2168376	CA	TG	8757.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;JOINED;set=Intersection	GT:AD:AF:DP	0/1:27,209:0.89:236
chr15	101527635	rs7176015	G	A	10892.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:68,464:0.87:532
chr15	101529118	rs4357923	C	T	1942.79	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:6,73:0.92:79
chr15	101550543	rs72765097	T	C	989.98	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr15	101550858	rs12595297	G	T	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr15	101550861	.	CTTT	C,CT	4320.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=2.775;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=22.04;ReadPosRankSum=0.743;SOR=0.515;set=HC	GT:AD:AF:DP	1/2:24,47,125:0.24,0.64:196
chr15	101552180	rs72765101	A	G	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:27,112:0.81:139
chr15	101555399	rs2034809	G	A	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	101555714	rs753930	T	A	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	101561980	.	CGTGTGTGTGTGTGT	C,CGT	2626.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=80;set=Intersection	GT:AF:DP	1/2:0.14,0.84:70
chr15	101562793	rs11247253	G	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	101566118	rs4427776	C	T	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	101569467	rs11639307	T	C	5412.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	101588923	rs34698485	C	G	1368.56	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:5,47:0.90:52
chr15	101591857	rs10710683	CG	C	4977.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr15	101591923	rs4965778	A	G	8671.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr15	101592004	rs201580059	G	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.367;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.693;QD=0.85;ReadPosRankSum=0.220;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:422,68:0.14:490
chr15	101593051	rs4965781	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr15	101593641	rs11631875	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=2.065;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:175,25:0.12:200
chr15	101597266	rs2924845	A	G	4385.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:23,175:0.88:198
chr15	101598200	rs11857803	G	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.375;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:327,67:0.17:394
chr15	101598314	rs11853661	C	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=5.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.411;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:150,45:0.23:195
chr15	101601367	rs148929418	C	CACTT	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.792;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:178,20:0.10:198
chr15	101606889	rs2924835	GC	AA	14452.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;JOINED;set=Intersection	GT:AD:AF:DP	0/1:68,353:0.84:421
chr15	101607513	rs2925201	T	C	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	101718700	rs2005180	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.992;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:165,23:0.12:188
chr15	101814650	rs117645634	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.111;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.593;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:157,29:0.16:186
chr15	101833492	rs151099296	T	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.697;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr15	101853281	rs117441572	G	A	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:30,156:0.84:186
chr15	101862690	rs36022203	G	T	6614.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:44,272:0.86:316
chr15	101862833	rs144769811	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.14;ReadPosRankSum=-0.969;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:423,58:0.12:481
chr15	101862970	rs1871975	T	C	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:10,77:0.89:87
chr15	101871941	rs34318939	G	GA	5259.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	101887767	rs2949	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	101887794	rs1030	T	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	101888081	rs875293	C	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	101924546	rs1135911	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-0.079;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:189,28:0.13:217
chr15	101929632	rs33912717	AT	A	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.835;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:110,44:0.29:154
chr15	101929825	rs6598460	G	C	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.854;SOR=0.146;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr15	101970308	rs2643354	G	A	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	101970323	rs3825896	G	T	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	101970336	rs3825895	T	C	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	101971388	rs2643356	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	101984036	rs11855154	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=10.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-1.632;SOR=0.054;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr15	102003442	rs12907397	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:12,65:0.84:77
chr15	102029685	rs199543153	G	GGC	1193.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	102191869	rs672314	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.228;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:128,20:0.14:148
chr15	102192034	rs507903	A	G	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.271;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:260,67:0.20:327
chr15	102192540	rs675436	T	G	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0.000;DB;DP=870;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.220;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:721,145:0.17:866
chr15	102192548	rs2939587	A	C	22917.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:0,780:1.00:780
chr15	102196186	rs572705	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.948;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:353,61:0.15:414
chr15	102224341	rs12901450	G	A	4909.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:38,213:0.85:251
chr15	102251993	rs11247320	G	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:11,84:0.88:95
chr15	102255246	.	G	GT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=4.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-1.281;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:84,24:0.22:108
chr15	102264304	rs1143138	G	C	3269.22	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:14,133:0.90:147
chr15	102284495	rs71407366	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr15	102284542	rs71154345	AG	A	1948.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:96,70:0.42:166
chr15	102284585	rs145709204	A	C	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:176,117:0.40:293
chr15	102284675	rs182931332	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:185,120:0.39:305
chr15	102291955	rs397212	G	A	5736.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:34,231:0.87:265
chr15	102312315	rs57638732	GA	G	10103.73	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	102313716	rs352719	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.628;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr15	102313869	rs72761685	G	A	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.393;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:93,29:0.24:122
chr16	81639	rs118023239	C	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.02;QD=27.15;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	97354	rs8466	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr16	97610	rs798675	G	A	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:104,107:0.51:211
chr16	97707	rs148403942	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr16	103423	rs2541593	C	A	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	103449	rs11376822	C	CG	5638.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	103517	rs183360	A	C	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	103923	rs2562145	C	G	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr16	105320	rs216596	A	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.56;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	105320	.	ATAACG	GTAACA,GTAACG	231	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=59.46;NF=9,23;NR=2,2;PP=231,175;QD=25.8607158966;SC=TTGGGAAACCATAACGTACAG;SbPval=0.21;Source=Platypus;TC=26;TCF=24;TCR=2;TR=11,25;WE=105333;WS=105310;set=Platypus	GT:AF:DP	0/1:0.42:26
chr16	105325	rs2858042	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.903;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-1.690;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr16	105444	rs2541594	C	T	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr16	106777	rs216597	G	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	106952	rs11435836	G	GC	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	107162	rs10266	C	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=1.432;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:76,58:0.43:134
chr16	107275	rs1045001	T	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	108585	rs216598	T	C	7096.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	108796	rs34941405	T	TG	2982.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	109671	rs216599	A	G	9030.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr16	110165	rs216600	T	C	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr16	110925	rs2562146	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr16	112112	rs216601	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	112151	rs216602	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	112513	rs216604	T	C	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr16	113883	rs10659183	G	GCC	12602.73	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr16	113886	rs11285099	GC	G	12787.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr16	113924	rs216605	A	G	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:130,114:0.47:244
chr16	113970	rs2157115	T	C	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:122,117:0.49:239
chr16	114535	rs2562147	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr16	115041	rs2288490	C	T	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:160,178:0.53:338
chr16	115072	rs6600227	A	C	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:172,172:0.50:344
chr16	128179	rs2562162	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	136888	rs743725	T	C	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	138772	rs57321480	A	AG	9207.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	142825	rs2541618	T	C	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	148352	rs2541616	G	A	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	160668	rs808892	T	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	175075	rs61016911	CA	C	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.675;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.930;QD=4.19;ReadPosRankSum=-0.059;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr16	188303	.	AGAGGAGGACGGAGCCGGAGGCGGAGGGGGCCT	A	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=11.856;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.392;QD=20.87;ReadPosRankSum=-1.333;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr16	203132	rs2541598	C	G	249.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=35.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	203135	rs2858919	T	A	249.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.88;QD=35.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	216190	rs11431675	C	CG	5036.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	223706	rs2541640	A	G	7008.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	223735	rs2685121	A	G	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	240280	rs1211375	A	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	284556	rs7191945	G	C	2423.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.548;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.93;ReadPosRankSum=-1.166;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chr16	284833	rs7202423	T	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	304514	rs3213508	C	T	2178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.889;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:106,109:0.51:215
chr16	309720	rs56337617	C	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr16	310243	rs56284809	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr16	311970	.	CTCTCTTCCTGGGCCTTGTGTCATTGCAGCCCCAGGCTCAGGTCCT	C	1531.73	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr16	312253	rs10903013	A	G	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:103,153:0.60:256
chr16	313202	rs2239738	C	A	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:59,103:0.64:162
chr16	313406	rs7189326	A	G	4450.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:145,206:0.59:351
chr16	313848	rs12325227	C	T	3695.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:79,154:0.66:233
chr16	314519	.	AGACATAGAGCTCCAGGCACGGTCACTCTGACAGCAGTGTCCT	A	2839.73	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:67,75:0.53:142
chr16	319398	rs916194	C	G	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:74,128:0.63:202
chr16	319511	rs739999	A	G	5872.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:171,275:0.62:446
chr16	319725	rs740000	T	C	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr16	319761	rs60300448	C	T	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr16	320759	rs9806942	C	T	5602.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:195,248:0.56:443
chr16	322934	rs9940585	C	T	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	324052	rs2685126	A	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:81,45:0.36:126
chr16	325683	rs200964940	C	CG	400.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	325695	rs201791993	A	AG	467.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	325732	rs202190256	A	AG	405.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	325771	rs111978133	GT	G	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	325943	.	A	AG	284.75	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	330678	rs368146102	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	332558	rs61572786	CG	C	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.074;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:38,23:0.38:61
chr16	334580	rs432925	G	C	4698.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:146,220:0.60:366
chr16	334732	rs45593734	C	T	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:117,124:0.51:241
chr16	334920	rs45619835	C	T	4575.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:282,217:0.43:499
chr16	335639	rs45503792	G	T	4674.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:327,237:0.42:564
chr16	336660	rs11647490	G	A	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:383,252:0.40:635
chr16	336888	rs199887121	C	CA	2189.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:99,89:0.47:188
chr16	336916	rs1048786	C	T	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:100,92:0.48:192
chr16	338332	rs11374767	A	AC	2203.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:75,84:0.53:159
chr16	339672	rs412243	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr16	341079	rs12925669	G	A	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr16	347829	rs149536239	C	T	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:132,84:0.39:216
chr16	359953	rs2301522	A	G	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	396264	rs1805105	A	G	12279.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr16	397044	rs758033	G	T	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:93,145:0.61:238
chr16	417757	rs13226	T	C	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:188,175:0.48:363
chr16	418462	rs11640313	C	G	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:177,111:0.39:288
chr16	419092	rs3830160	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr16	419283	rs11434190	A	AG	4742.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	419512	rs67175660	G	T	2332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.334;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.305;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:242,130:0.35:372
chr16	419614	.	C	CCCGACCTGCTCTGCTCGCCTCCCCGACCTGCTCTGCTCGCCTCT	8388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DP=738;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-4.767;QD=11.63;ReadPosRankSum=-8.371;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:532,189:0.26:721
chr16	419733	rs114829852	A	C	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:215,90:0.30:305
chr16	419923	rs73492331	G	C	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:139,127:0.48:266
chr16	420267	rs117264571	A	C	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr16	421912	rs17136392	G	A	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:66,49:0.43:115
chr16	422544	rs144177536	A	AG	2847.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:134,100:0.43:234
chr16	424420	rs3743888	C	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.353;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.952;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr16	424695	rs66485171	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr16	426432	rs2071915	T	C	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:132,100:0.43:232
chr16	426476	rs2071916	T	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:118,83:0.41:201
chr16	427349	rs763142	C	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr16	427479	rs11248931	T	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:85,68:0.44:153
chr16	427516	rs11649031	T	C	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:107,67:0.39:174
chr16	427657	rs11641693	G	A	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,64:0.47:135
chr16	427784	rs11641742	G	A	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.785;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:119,94:0.44:213
chr16	427820	rs12922073	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:92,66:0.42:158
chr16	427866	rs12933709	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr16	427925	rs61261356	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr16	431609	rs150272832	A	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr16	431890	.	AGCCTCTGCCGCCTCC	A	277.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	455646	rs873477	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:43,70:0.62:113
chr16	456239	rs11391097	G	GC	6163.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	456291	rs11391098	G	GC	9061.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr16	456416	rs3743890	T	G	2244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.914;QD=9.05;ReadPosRankSum=0.949;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:134,114:0.46:248
chr16	456483	rs3785290	T	C	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.374;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:76,70:0.48:146
chr16	460578	rs11315123	CT	C	542.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	460976	rs140561403	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:113,69:0.38:182
chr16	461697	rs4984667	C	T	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,64:0.63:101
chr16	532248	rs9935319	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr16	532279	rs12917958	C	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr16	539088	rs3830847	T	TAA	2766.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:81,76:0.48:157
chr16	539093	rs74390230	G	C	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,68:0.49:140
chr16	570454	rs11863276	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,59:0.58:102
chr16	570557	rs11537754	T	C	5009.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:142,226:0.61:368
chr16	570623	rs2071978	G	A	5644.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:151,247:0.62:398
chr16	601892	rs28422497	T	C	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:90,97:0.52:187
chr16	601914	rs12449064	G	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr16	602046	rs7196821	T	C	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	603471	rs11248937	A	G	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:131,117:0.47:248
chr16	613168	rs12597975	A	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr16	613729	rs45619831	T	G	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:61,99:0.62:160
chr16	614445	rs57546191	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr16	614658	rs60243750	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr16	614763	rs113355349	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr16	614821	rs1010761	A	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr16	615326	rs59985111	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr16	622565	rs12917944	A	G	6486.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:266,178:0.40:444
chr16	622568	rs144282116	G	GATGT	6488.73	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:266,174:0.40:440
chr16	624114	rs2071979	A	G	5089.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:381,263:0.41:644
chr16	624713	rs4984669	C	T	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr16	626346	rs2071980	A	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.022;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr16	628302	rs3752568	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr16	628994	rs113780855	TGGGC	T	3542.73	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:153,96:0.39:249
chr16	629006	rs59476302	C	T	3693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=7.012;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.205;QD=16.34;ReadPosRankSum=-0.955;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:133,93:0.41:226
chr16	630089	rs7191939	C	T	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr16	630367	rs7192508	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:88,68:0.44:156
chr16	630405	rs2071982	T	G	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr16	630902	rs1045274	C	G	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:355,225:0.39:580
chr16	632011	rs74872027	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr16	632051	rs2018789	T	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr16	632073	rs916414	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr16	632115	rs916415	G	A	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:94,50:0.35:144
chr16	632138	rs4262946	C	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:135,64:0.32:199
chr16	632180	rs4984897	G	C	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:198,117:0.37:315
chr16	632198	rs916416	T	A	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:204,132:0.39:336
chr16	632225	rs4006748	T	C	4820.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:204,133:0.39:337
chr16	632230	rs67976359	CG	C	4630.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:213,127:0.37:340
chr16	632233	rs62030874	T	C	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:212,126:0.37:338
chr16	632283	rs7187227	G	A	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:203,128:0.39:331
chr16	633125	rs1045277	T	C	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:235,134:0.36:369
chr16	633353	rs710924	TG	CA	8690.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;JOINED;set=Intersection	GT:AD:AF:DP	0/1:258,227:0.47:485
chr16	633843	rs8675	A	G	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=0.003;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:65,51:0.44:116
chr16	633851	rs8909	T	C	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.97;ReadPosRankSum=0.724;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:60,48:0.44:108
chr16	646246	rs72767868	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:119,96:0.45:215
chr16	667490	rs12447387	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr16	668443	rs34011309	A	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr16	679412	rs9929621	C	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr16	679814	rs12447874	T	C	13179.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr16	679953	rs17139376	C	T	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:150,117:0.44:267
chr16	681284	rs8062289	C	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,84:0.47:177
chr16	681587	rs111991728	TTAAGAA	T	391.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr16	699456	rs12934086	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr16	700644	rs13337278	G	C	5446.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:188,252:0.57:440
chr16	700896	.	C	T	1510.77	.	AC=1;AF=0.500;AN=2;DP=162;set=Intersection	GT:AD:AF:DP	0/1:89,72:0.45:161
chr16	701578	rs35244470	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr16	703721	rs9936879	A	C	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:165,235:0.59:400
chr16	703968	.	G	A	849.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr16	705360	rs3803697	T	C	3823.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:110,169:0.61:279
chr16	705795	rs12599798	C	T	9426.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:299,410:0.58:709
chr16	705844	rs8051645	T	C	7026.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:234,293:0.56:527
chr16	706010	rs35582942	C	CA	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr16	706067	rs9932866	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr16	706267	rs9933039	G	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-1.095;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr16	707034	rs6600228	A	C	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr16	707295	rs6600229	T	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr16	708419	rs7188691	T	C	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:75,112:0.60:187
chr16	709001	rs4984906	C	A	5933.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:282,283:0.50:565
chr16	709152	rs7184667	G	A	15603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.813;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.079;QD=20.97;ReadPosRankSum=1.437;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:343,401:0.54:744
chr16	709157	rs7194532	T	C	15539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.078;QD=20.78;ReadPosRankSum=1.401;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:345,403:0.54:748
chr16	710255	rs3752496	C	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr16	710808	rs73487454	G	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr16	710995	rs200911762	T	C	34.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-0.000;QD=11.44;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr16	711016	rs76032962	G	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-0.000;QD=9.48;ReadPosRankSum=-2.352;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr16	711326	rs9932282	G	C	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:59,81:0.58:140
chr16	711545	rs11284424	CG	C	6515.73	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:164,259:0.61:423
chr16	711582	rs8062685	C	G	6203.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:178,266:0.60:444
chr16	711712	rs3177415	C	T	7047.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:255,334:0.57:589
chr16	711905	rs2301426	A	G	6603.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:238,307:0.56:545
chr16	712127	rs10903018	A	G	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	712867	rs1057835	A	G	4570.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:141,211:0.60:352
chr16	713204	rs9929652	A	G	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.66;ReadPosRankSum=1.374;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:26,36:0.58:62
chr16	715847	rs3752494	A	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-0.880;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:32,48:0.60:80
chr16	715968	.	T	G	3461.77	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:69,92:0.57:161
chr16	715990	rs7190775	G	A	4113.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:91,122:0.57:213
chr16	716273	rs11866949	T	C	7230.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:231,327:0.59:558
chr16	716287	rs9934288	C	A	7728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.015;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=-1.379;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:241,358:0.60:599
chr16	716428	rs3743909	G	A	5773.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:192,252:0.57:444
chr16	716631	rs117904014	C	T	6816.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:440,334:0.43:774
chr16	717057	rs7189028	T	C	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:51,75:0.60:126
chr16	717523	rs3752493	G	T	5156.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:171,234:0.58:405
chr16	717544	rs3752492	G	C	4090.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:156,195:0.56:351
chr16	717828	rs3752490	G	T	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:49,109:0.69:158
chr16	718514	rs7204542	C	G	11478.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr16	719592	rs11557858	G	A	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:94,154:0.62:248
chr16	720071	rs62032482	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr16	720152	rs3752487	T	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:60,74:0.55:134
chr16	720960	rs3743912	C	T	4423.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:121,191:0.61:312
chr16	722331	rs3177338	C	T	3424.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:126,156:0.55:282
chr16	722548	rs1128550	A	G	3563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.800;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-2.399;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:112,155:0.58:267
chr16	723647	rs1045716	C	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr16	726907	rs111852492	C	T	11297.77	.	AC=1;AF=0.500;AN=2;DB;DP=1262;set=Intersection	GT:AD:AF:DP	0/1:701,553:0.44:1254
chr16	732287	rs3216838	GC	G	6821.73	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:343,231:0.40:574
chr16	737269	rs17850290	C	T	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:287,163:0.36:450
chr16	771181	rs56225914	C	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	771234	rs55708282	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	771286	rs11540049	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	771750	rs3752555	T	C	8188.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr16	772061	rs55956436	C	T	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	772141	rs11867009	G	C	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	772842	rs12599130	T	C	11501.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr16	773291	rs35843452	GC	G	5970.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	773313	rs58842228	G	GC	5987.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:9,216:0.96:225
chr16	773341	rs4984920	G	A	8170.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	773367	rs55787204	G	T	4711.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:151,221:0.59:372
chr16	773542	.	G	A	3582.77	.	AC=1;AF=0.500;AN=2;DP=439;set=Intersection	GT:AD:AF:DP	0/1:255,180:0.41:435
chr16	774045	rs145548033	TGGGGCAGTGGGTGGGTGG	T	2536.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,64:0.62:103
chr16	774520	rs4984921	C	T	8541.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	774692	rs2071950	A	G	9051.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr16	775947	rs12446058	G	C	4485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.43;ReadPosRankSum=1.382;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:83,117:0.58:200
chr16	775954	rs12448311	CC	AA	4577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.150;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=1.097;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:76,112:0.60:188
chr16	777627	rs7188886	C	T	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:110,173:0.61:283
chr16	778024	rs1406814	T	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:88,54:0.38:142
chr16	778158	rs1406815	C	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr16	778820	rs12448432	G	A	2987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-2.084;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:195,155:0.44:350
chr16	779689	rs1054788	G	C	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr16	780736	rs35455787	C	G	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:88,72:0.45:160
chr16	782397	rs12443803	C	T	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:180,253:0.58:433
chr16	784765	rs9928077	C	T	6645.77	.	AC=1;AF=0.500;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	0/1:494,328:0.40:822
chr16	784920	rs9932304	A	G	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	787738	rs12597563	G	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr16	787827	rs12449156	A	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr16	813775	.	A	AGCATCCCATCCCCCGTCCCCTCCCCCACACCCCTCCCCCACCCCCATGTCCCCTCCCCACCCCTCCCCCACACCCTCCCCCACCCCTCCCCATGTCCCCTCCCCTACCTCCTCCCCCCGCGTCCCCTCCCCCC	1385.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=4.928;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.76;ReadPosRankSum=2.309;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:3,31:0.91:34
chr16	813783	.	C	A	1194	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=3;HapScore=2;MGOF=141;MMLQ=28;MQ=59.69;NF=1;NR=24;PP=1194;QD=49.1508485019;SC=CCAGCATCCCCTCCCCCTTCC;SbPval=0.98;Source=Platypus;TC=30;TCF=5;TCR=25;TR=25;WE=813791;WS=813765;set=Platypus	GT:AD:AF:DP	1/0:5,25:0.83:30
chr16	815628	rs1737340	A	G	18199.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr16	820480	.	G	GCACCCC	1353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=-0.266;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:45,36:0.44:81
chr16	823386	.	CTT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=-0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.64;ReadPosRankSum=0.105;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr16	830747	.	TGTGTGCACGGGTAGGTGACG	T	1524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DP=454;ExcessHet=3.0103;FS=6.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=2.648;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:187,88:0.32:275
chr16	839262	rs569951	A	G	8062.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	845901	rs2982244	T	C	20542.77	.	AC=2;AF=1.00;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	1/1:0,745:1.00:745
chr16	846999	rs140737412	G	A	5047.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:185,220:0.54:405
chr16	905559	rs4984949	A	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr16	1014046	rs148550990	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,30:0.34:87
chr16	1020732	rs142343038	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:72,38:0.35:110
chr16	1031303	.	TGAGAGA	T	345	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=3;MGOF=21;MMLQ=18;MQ=54.11;NF=2;NR=9;PP=345;QD=31.6363636364;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.48;Source=Platypus;TC=28;TCF=4;TCR=24;TR=11;WE=1031316;WS=1031293;set=Platypus	GT:AD:AF:DP	0/1:17,11:0.39:28
chr16	1034834	rs237674	T	C	12510.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr16	1115849	rs80286221	C	A	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:93,131:0.58:224
chr16	1115904	rs66626263	G	A	7935.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr16	1116169	rs7189857	A	G	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	1116220	rs34024516	T	TG	3694.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	1116243	rs35432067	C	T	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.765;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:42,59:0.58:101
chr16	1116445	rs530518	A	G	9135.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr16	1129872	rs169068	C	T	6044.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:212,266:0.56:478
chr16	1129912	rs642249	A	G	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr16	1131181	rs12599155	C	T	8761.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:258,400:0.61:658
chr16	1204116	rs112034409	A	G	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.311;QD=6.77;ReadPosRankSum=1.621;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr16	1244877	rs9936834	G	A	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	1250831	rs60309396	G	A	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.515;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:46,62:0.57:108
chr16	1252259	rs9934839	A	G	6218.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:237,267:0.53:504
chr16	1252369	rs61734410	C	T	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:201,166:0.45:367
chr16	1252441	rs4984636	T	C	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:121,184:0.60:305
chr16	1255030	rs2974835	A	G	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	1255040	rs56412134	GC	G	2217.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,53:0.70:76
chr16	1255058	rs8052049	T	G	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr16	1256839	rs115172853	T	C	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr16	1257731	rs12930875	G	A	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:265,185:0.41:450
chr16	1260021	rs8056494	G	T	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	1260481	rs8063574	T	C	20669.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:0,760:1.00:760
chr16	1260767	rs2738897	G	A	9977.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr16	1261024	rs2738898	C	T	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	1261119	rs2738899	G	A	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	1261219	rs2753326	A	G	21863.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr16	1261222	rs2753325	A	G	21930.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr16	1261282	rs4984637	T	C	17006.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr16	1261377	rs2738900	G	A	9816.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr16	1265600	rs2235634	G	A	4465.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:313,230:0.42:543
chr16	1265720	rs3897150	C	T	8911.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr16	1266803	rs11395347	C	CT	2811.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	1268494	rs2745136	C	T	10148.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr16	1269029	rs2738893	T	C	7122.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr16	1270162	rs1054645	G	A	12238.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,465:1.00:465
chr16	1270349	rs4247094	T	C	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	1271890	rs1004041	G	T	6662.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	1272038	rs11248860	G	A	8749.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr16	1272684	rs4984638	C	G	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr16	1272865	rs4984639	G	A	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	1273490	rs760357	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,57:0.61:93
chr16	1273638	rs909920	A	G	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	1275135	rs9938123	T	C	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	1275208	rs200447029	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:84,94:0.53:178
chr16	1278599	rs4360940	A	G	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	1278744	rs62012862	C	T	4034.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.96;MQRankSum=1.155;QD=37.02;ReadPosRankSum=-0.863;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,108:0.99:109
chr16	1278767	rs201725275	C	T	2919.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;MQRankSum=0.758;QD=44.24;ReadPosRankSum=-1.223;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:1,65:0.98:66
chr16	1278806	rs199504258	G	A	873.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.552;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;MQRankSum=0.000;QD=31.21;ReadPosRankSum=-1.364;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr16	1278888	rs200768967	G	C	67.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=16.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	1278950	rs201636233	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	1279041	.	A	G	40.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	1279537	rs188458795	C	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.68;QD=43.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	1279545	rs1800990	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.51;QD=45.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	1279555	rs148897236	C	T	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.47;QD=49.90;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	1279574	rs199887053	C	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.23;QD=45.11;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	1279584	rs111992451	T	C	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.57;QD=42.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	1279623	rs72633259	G	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr16	1279704	rs202107419	A	G	1302.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.87;MQRankSum=1.903;QD=35.21;ReadPosRankSum=-1.322;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr16	1279710	rs200630968	G	A	1147.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.388;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.69;MQRankSum=1.888;QD=39.57;ReadPosRankSum=-0.045;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr16	1279714	rs192643610	A	G	974.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=1.927;QD=44.27;ReadPosRankSum=0.794;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,20:0.91:22
chr16	1279717	rs201728868	C	T	805.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=1.899;QD=38.37;ReadPosRankSum=0.936;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr16	1279732	rs201836020	C	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.145;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.79;MQRankSum=1.392;QD=33.74;ReadPosRankSum=1.992;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr16	1279778	rs368004602	G	C	226.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.04;MQRankSum=0.157;QD=28.36;ReadPosRankSum=-0.887;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr16	1279790	.	G	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.88;MQRankSum=-0.489;QD=24.97;ReadPosRankSum=0.992;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	1279816	rs371907673	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	1279817	rs200692215	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	1279908	.	G	C	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=1.036;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr16	1279909	.	C	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=1.036;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr16	1291075	rs71380253	T	C	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	1291188	rs17434400	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.89;QD=26.71;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	1291308	rs201568970	A	G	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.33;MQRankSum=-8.050;QD=3.30;ReadPosRankSum=0.696;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:129,22:0.15:151
chr16	1291318	rs151324823	G	C	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.75;MQRankSum=-7.962;QD=3.15;ReadPosRankSum=2.693;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:134,22:0.14:156
chr16	1291337	rs200843295	G	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.71;MQRankSum=-7.865;QD=3.74;ReadPosRankSum=3.495;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:123,23:0.16:146
chr16	1291355	rs112842602	G	C	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=51.11;MQRankSum=-7.679;QD=4.87;ReadPosRankSum=1.101;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:107,24:0.18:131
chr16	1291454	rs201351744	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=44.50;MQRankSum=-2.594;QD=1.53;ReadPosRankSum=2.146;SOR=1.930;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr16	1291554	rs202044288	T	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.348;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=12.505;MLEAC=1;MLEAF=0.500;MQ=43.83;MQRankSum=-2.021;QD=3.67;ReadPosRankSum=-4.692;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:64,9:0.12:73
chr16	1291555	.	C	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=15.402;MLEAC=1;MLEAF=0.500;MQ=43.82;MQRankSum=-2.012;QD=3.92;ReadPosRankSum=-5.076;SOR=3.567;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr16	1291564	rs200053482	C	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.022;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=28.882;MLEAC=1;MLEAF=0.500;MQ=44.38;MQRankSum=-1.753;QD=2.14;ReadPosRankSum=-4.109;SOR=4.707;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr16	1291591	rs201278990	G	C	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.111;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=9.367;MLEAC=1;MLEAF=0.500;MQ=45.39;MQRankSum=-2.356;QD=10.87;ReadPosRankSum=-4.834;SOR=1.400;set=HC	GT:AD:AF:DP	0/1:129,52:0.29:181
chr16	1291597	rs144979264	C	G	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:61,137:0.69:198
chr16	1291598	rs200334042	G	A	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=12.908;MLEAC=1;MLEAF=0.500;MQ=45.73;MQRankSum=-3.109;QD=10.52;ReadPosRankSum=-4.301;SOR=1.595;set=HC	GT:AD:AF:DP	0/1:141,62:0.31:203
chr16	1291608	rs201820654	A	G	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=14.058;MLEAC=1;MLEAF=0.500;MQ=46.04;MQRankSum=-4.078;QD=9.49;ReadPosRankSum=-2.102;SOR=1.530;set=HC	GT:AD:AF:DP	0/1:172,72:0.30:244
chr16	1291623	.	CC	TG	3223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=12.072;JOINED;MLEAC=1;MLEAF=0.500;MQ=46.48;MQRankSum=-3.686;QD=11.39;ReadPosRankSum=-0.652;SOR=1.344;set=HC	GT:AD:AF:DP	0/1:195,88:0.31:283
chr16	1291639	rs201223167	A	G	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:227,141:0.38:368
chr16	1291717	rs202230226	T	TG	4224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=2.388;MLEAC=1;MLEAF=0.500;MQ=45.58;MQRankSum=-0.172;QD=13.12;ReadPosRankSum=-1.877;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:168,154:0.48:322
chr16	1291753	rs369483846	CCTGGGCTCCCT	C	2536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.99;MQRankSum=-1.699;QD=15.56;ReadPosRankSum=0.582;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:95,68:0.42:163
chr16	1291800	rs375717182	G	C	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.809;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=9.319;MLEAC=1;MLEAF=0.500;MQ=38.91;MQRankSum=-0.412;QD=13.60;ReadPosRankSum=-0.354;SOR=0.051;set=HC	GT:AD:AF:DP	0/1:47,46:0.49:93
chr16	1291831	rs202156919	G	C	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.78;MQRankSum=0.029;QD=18.70;ReadPosRankSum=-0.811;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr16	1291850	rs200171211	T	C	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.085;MLEAC=1;MLEAF=0.500;MQ=38.83;MQRankSum=0.578;QD=18.57;ReadPosRankSum=0.328;SOR=0.198;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr16	1291941	rs201280504	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=39.17;MQRankSum=1.631;QD=11.26;ReadPosRankSum=0.338;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr16	1291972	rs202246813	C	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=11.761;MLEAC=1;MLEAF=0.500;MQ=39.30;MQRankSum=1.306;QD=6.58;ReadPosRankSum=-1.001;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr16	1291975	rs200303851	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=39.22;MQRankSum=0.765;QD=7.31;ReadPosRankSum=-0.549;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr16	1292003	rs199639987	C	G	262.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.29;QD=37.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	1292021	rs200521594	C	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=34.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	1292124	rs144701102	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=9.217;MLEAC=1;MLEAF=0.500;MQ=46.08;MQRankSum=-1.997;QD=1.76;ReadPosRankSum=1.476;SOR=2.497;set=HC	GT:AD:AF:DP	0/1:91,12:0.12:103
chr16	1292147	rs145402040	G	A	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=5.702;MLEAC=1;MLEAF=0.500;MQ=49.30;MQRankSum=-4.575;QD=3.00;ReadPosRankSum=-3.126;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:136,29:0.18:165
chr16	1292254	rs1060314	T	G	3702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-4.934;QD=7.80;ReadPosRankSum=4.805;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:361,114:0.24:475
chr16	1292257	rs17135220	G	T	3705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-5.530;QD=7.72;ReadPosRankSum=4.301;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:363,117:0.24:480
chr16	1292425	rs67723611	T	C	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.29;QD=33.13;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	1306346	rs3865205	CG	GC	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.133;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.101;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-9.535;QD=4.36;ReadPosRankSum=-3.444;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:107,22:0.17:129
chr16	1306355	rs1800984	T	C	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:37,76:0.67:113
chr16	1306410	rs3993979	A	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr16	1306439	rs2401941	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=16.056;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-1.983;QD=0.94;ReadPosRankSum=-1.599;SOR=2.807;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr16	1306642	rs61739908	C	T	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=2.287;QD=9.71;ReadPosRankSum=-0.282;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:76,77:0.50:153
chr16	1306671	rs1141966	G	A	2707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.264;QD=18.17;ReadPosRankSum=-1.176;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:73,76:0.51:149
chr16	1306681	rs1141967	G	A	2533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=18.63;ReadPosRankSum=0.912;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:71,65:0.48:136
chr16	1306802	rs2401930	A	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=24.708;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-5.959;QD=3.90;ReadPosRankSum=-0.937;SOR=3.601;set=HC	GT:AD:AF:DP	0/1:68,12:0.15:80
chr16	1306817	rs3993983	G	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=13.750;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-5.730;QD=4.45;ReadPosRankSum=-1.156;SOR=2.438;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr16	1306873	rs113333718	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=4.617;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-1.245;QD=1.34;ReadPosRankSum=-1.941;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:119,23:0.16:142
chr16	1306918	rs74470113	C	T	4715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=9.186;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-7.923;QD=22.14;ReadPosRankSum=0.912;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:97,116:0.54:213
chr16	1306921	rs78324915	G	A	4822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=7.899;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-8.028;QD=22.02;ReadPosRankSum=0.780;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:98,121:0.55:219
chr16	1306927	rs79472859	C	T	4867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=9.666;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-8.195;QD=21.07;ReadPosRankSum=0.845;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:103,128:0.55:231
chr16	1306971	rs72775466	A	G	4661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=13.296;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-8.871;QD=17.79;ReadPosRankSum=3.526;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:139,123:0.47:262
chr16	1306973	rs79313952	A	G	4661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=12.119;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-8.754;QD=17.93;ReadPosRankSum=3.310;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:139,121:0.47:260
chr16	1306986	rs72775467	C	T	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:139,115:0.45:254
chr16	1307050	.	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=8.249;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-12.058;QD=1.14;ReadPosRankSum=-4.923;SOR=1.496;set=HC	GT:AD:AF:DP	0/1:190,27:0.12:217
chr16	1311333	rs3765436	A	G	7764.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:240,356:0.60:596
chr16	1311513	rs3085832	G	GGGCA	5872.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:132,150:0.53:282
chr16	1312546	rs1610293	T	A	8423.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:262,395:0.60:657
chr16	1312826	rs7184111	A	G	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:139,163:0.54:302
chr16	1312976	rs8048322	T	G	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:141,181:0.56:322
chr16	1323539	rs8060254	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr16	1323781	rs1610294	T	C	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	1326785	rs35786958	A	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-0.881;QD=8.83;ReadPosRankSum=-0.294;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr16	1358608	rs148430996	ATGAGGGAGGGAGGGAATTAG	A	1237.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.19;QD=41.26;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	1358917	rs11644706	A	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	1358976	rs11645809	T	A	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	1364140	rs9941160	T	C	9937.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	1364281	rs4984806	T	C	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr16	1370303	rs909916	T	C	6383.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	1370309	rs909917	C	G	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	1370597	rs4017786	G	C	5569.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	1370614	rs8063770	C	G	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	1370630	rs8043720	A	G	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	1374656	rs761060	A	G	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	1374818	rs8063	A	G	11938.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr16	1388416	rs13338616	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	1388888	rs7197416	C	T	9507.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr16	1389153	rs7202563	C	A	10275.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr16	1389751	rs113792347	C	G	4065.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:169,191:0.53:360
chr16	1391221	rs34468534	G	A	6295.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:189,274:0.59:463
chr16	1391871	rs2369699	C	G	3955.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:130,169:0.57:299
chr16	1392877	rs742458	T	C	3681.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:84,174:0.67:258
chr16	1393020	rs2235632	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=2.672;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:79,33:0.29:112
chr16	1394507	rs1132356	A	C	8559.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr16	1394551	rs11248872	A	G	9038.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr16	1394741	rs151251565	AGCCAACAGG	A	11798.73	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:227,302:0.57:529
chr16	1395420	rs112377811	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr16	1397518	rs34339539	G	GC	6495.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	1397815	rs1132358	C	T	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:229,152:0.40:381
chr16	1398077	rs34766513	C	CCT	40535.73	.	AC=2;AF=1.00;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	1/1:0,903:1.00:903
chr16	1407792	rs4984644	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	1407809	rs4984820	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	1411894	rs76594024	G	A	9653.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:287,435:0.60:722
chr16	1417408	rs4984823	T	C	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	1419947	rs11248874	A	G	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	1433766	rs12918814	T	C	12952.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr16	1447278	rs61738727	A	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	1447319	.	G	A	181	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=4;HapScore=2;MGOF=49;MMLQ=28;MQ=55.55;NF=1;NR=10;PP=181;QD=19.615564777;SC=AGGTGTCAGGGGGACACAGAG;SbPval=0.68;Source=Platypus;TC=30;TCF=3;TCR=27;TR=11;WE=1447327;WS=1447309;set=Platypus	GT:AD:AF:DP	1/0:19,11:0.37:30
chr16	1451519	rs761068	G	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:9,47:0.84:56
chr16	1455900	rs8044833	C	T	14775.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr16	1458381	rs1609562	G	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	1458561	rs2179534	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	1464636	rs111437424	A	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.04;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	1476465	rs4984834	A	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	1479250	rs11646599	C	T	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:256,168:0.40:424
chr16	1484338	rs7192100	A	G	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	1484392	rs12598718	G	C	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	1484473	rs7192331	A	G	8143.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr16	1486598	rs76876166	G	A	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:208,169:0.45:377
chr16	1489234	rs45514093	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr16	1492660	rs760993	T	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	1493030	rs1883480	C	G	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	1493098	rs760994	G	A	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	1493130	rs760995	C	T	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	1493397	rs115280269	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr16	1493759	rs12596752	C	T	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	1496821	.	T	G	1449.77	.	AC=1;AF=0.500;AN=2;DP=206;set=Intersection	GT:AD:AF:DP	0/1:129,76:0.37:205
chr16	1497137	rs12599176	C	T	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	1498197	rs2235578	A	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr16	1498501	rs41292291	G	A	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:120,85:0.41:205
chr16	1498520	rs12597739	A	G	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:75,96:0.56:171
chr16	1499377	rs742408	C	T	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:81,87:0.52:168
chr16	1500708	rs61073146	G	GC	3117.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	1503879	rs2235579	T	A	10721.77	.	AC=1;AF=0.500;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	0/1:317,480:0.60:797
chr16	1504017	rs4786337	A	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.216;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.19;ReadPosRankSum=0.673;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:62,40:0.39:102
chr16	1504633	rs4265806	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr16	1505599	rs7190701	C	T	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr16	1507209	rs117974048	C	T	5895.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:184,266:0.59:450
chr16	1507737	rs117183989	G	A	5656.77	.	AC=1;AF=0.500;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	0/1:550,309:0.36:859
chr16	1507778	rs9922189	T	C	20922.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:0,807:1.00:807
chr16	1509273	.	A	AGGAGAGCAGCAGACACGTCGGGGCCTCAGGGAAGG	2296.73	.	AC=2;AF=1.00;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	1510567	rs2072950	T	G	7397.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	1511552	rs2744994	G	T	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	1515162	rs2235580	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	1515503	rs2744997	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	1545448	rs2235624	A	G	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	1547220	rs2235630	C	T	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	1551826	rs72779276	C	G	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:47,95:0.67:142
chr16	1557794	rs12927760	A	T	1649.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.359;QD=21.15;ReadPosRankSum=-0.557;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:7,71:0.91:78
chr16	1573810	rs2745176	A	G	15536.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr16	1706435	rs61739874	C	T	7313.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:358,345:0.49:703
chr16	1718844	rs181166388	C	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr16	1728147	rs113571946	A	G	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	1748888	rs34233915	G	A	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:274,172:0.39:446
chr16	1815946	rs2575371	C	T	17542.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr16	1817431	rs2575369	C	T	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	1817754	rs2076427	A	G	7927.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	1817768	rs2076428	T	G	8330.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr16	1817935	rs2076429	A	C	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr16	1818152	rs2076430	CT	TC	20752.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr16	1818503	rs2076431	G	C	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	1818680	rs2072989	G	C	9427.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr16	1820992	rs11890	T	A	17280.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr16	1822797	rs34595082	C	CACCT	2411.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	1822947	rs1076695	C	G	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-1.588;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:88,76:0.46:164
chr16	1823444	rs761065	C	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	1825768	rs2745169	A	C	12551.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:1,473:1.00:474
chr16	1826302	rs2437732	G	T	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr16	1826377	rs2235636	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.04;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	1827836	rs1178432	T	C	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	1836709	rs2575351	G	C	9618.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr16	1836796	rs2235648	C	A	9660.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,352:1.00:353
chr16	1837900	rs344358	T	C	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	1838640	rs344359	T	C	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	1838703	rs11540961	G	A	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:207,169:0.45:376
chr16	1838836	rs1065656	C	G	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	1842209	rs3751893	A	G	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	1843672	rs3817902	T	C	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	1844781	rs2256923	A	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	1859150	rs1057071	G	A	9386.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	1859153	rs1057070	T	C	9444.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=1.377;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	1859432	rs1628812	G	C	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	1859476	rs1629513	G	A	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=2.221;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	1859482	rs1629534	A	C	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	1859730	rs2745199	G	A	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	1859850	rs1742442	A	G	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr16	1870037	rs144480059	TGGGCTGCCTGCTGAGCTGAGG	T	4670.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr16	1872160	rs238680	G	A	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	1872479	rs238679	A	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	1873087	rs104843	C	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	1902889	rs1617255	T	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	1904239	rs10500322	T	A	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	1907652	rs428123	G	A	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	1907701	rs408286	AG	CA	11649.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr16	1907946	rs411193	C	T	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	1910219	rs391288	A	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	1910373	rs433268	C	G	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	1912139	rs380846	T	C	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	1917998	rs1742444	T	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	1918125	rs1742446	T	G	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr16	1961674	rs337285	G	C	6826.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	1968338	rs199930198	T	TC	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	2004718	rs2815301	T	C	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:108,75:0.41:183
chr16	2011126	rs758335	A	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr16	2014031	rs6366	C	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr16	2014283	rs2286466	A	G	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-0.508;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:57,47:0.45:104
chr16	2014424	rs403609	C	G	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:87,77:0.47:164
chr16	2028402	rs8460	A	C	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:178,103:0.37:281
chr16	2034661	rs2075812	T	C	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:101,67:0.40:168
chr16	2035868	rs1046502	C	T	3523.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:275,184:0.40:459
chr16	2048826	rs2240691	C	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:108,85:0.44:193
chr16	2049003	rs2286468	A	T	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=0.640;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:119,86:0.42:205
chr16	2049640	rs2286469	A	G	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	2050293	rs3743847	C	G	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:283,150:0.35:433
chr16	2050346	rs3743846	A	G	4348.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:424,246:0.37:670
chr16	2050941	rs8046471	A	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.66;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	2050941	.	AAAAAAGAGCTA	CAAAAAGAGCCG,CAAAAAGAGCTA	2121	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.09;FR=0.5000,0.5000;HP=8;HapScore=1;MGOF=8;MMLQ=17;MQ=59.98;NF=28,62;NR=8,18;PP=1475,2121;QD=42.7352187462;SC=AACAAACAAAAAAAAAGAGCT;SbPval=0.54;Source=Platypus;TC=81;TCF=63;TCR=18;TR=36,80;WE=2050960;WS=2050931;set=Platypus	GT:AF:DP	0/1:0.44:81
chr16	2050951	rs8050923	TA	CG	1652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.804;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.924;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=-0.926;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:51,44:0.46:95
chr16	2052806	rs55662859	G	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr16	2059621	rs11366527	GC	G	6325.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	2059674	rs71384660	T	C	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=38.56;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	2059698	rs71384661	T	G	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=46.68;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	2059708	rs71384662	T	G	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=45.15;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	2059710	rs71384663	T	G	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=44.74;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	2059736	rs71148116	CG	C	3017.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.36;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	2059762	rs71148117	GC	G	2329.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	2059778	rs71148118	GT	G	2154.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	2059782	rs71384664	T	C	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	2059790	rs968417	A	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	2059939	rs968418	A	C	7968.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	2059955	rs62038790	A	G	9749.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	2070164	rs2286471	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr16	2070317	rs76547132	C	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.942;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr16	2070327	rs3217040	G	GA	1427.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr16	2070568	rs2286472	A	C	8437.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:252,378:0.60:630
chr16	2086535	rs41286703	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr16	2087452	.	T	TG	811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.400;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=10.207;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.220;QD=7.73;ReadPosRankSum=-0.245;SOR=1.858;set=HC	GT:AD:AF:DP	0/1:63,42:0.40:105
chr16	2087460	rs12447809	G	T	1386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.978;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.734;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.915;QD=11.01;ReadPosRankSum=0.654;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:63,63:0.50:126
chr16	2087562	rs1132368	G	A	5705.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:179,265:0.60:444
chr16	2087658	rs12445258	A	G	9395.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr16	2087785	rs34165865	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:86,62:0.42:148
chr16	2088312	rs11876	C	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.703;QD=7.74;ReadPosRankSum=0.022;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:68,48:0.41:116
chr16	2088401	rs150212258	AC	A	1880.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr16	2105335	rs2516734	C	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	2105400	rs1800720	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr16	2107322	rs78160478	G	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr16	2110571	rs2074968	C	G	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	2111779	rs17135764	T	C	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	2115413	.	CAAAAAAAAAAAAAAA	C	2153.73	.	AC=1;AF=0.500;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;QD=33.65;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:11,53:0.83:64
chr16	2115481	rs45477195	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:111,71:0.39:182
chr16	2120402	rs7187438	T	C	5540.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:172,230:0.57:402
chr16	2132583	rs1800705	G	A	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:60,98:0.62:158
chr16	2138218	rs1800718	A	C	6420.77	.	AC=1;AF=0.500;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	0/1:543,326:0.38:869
chr16	2138269	rs1748	T	C	21763.77	.	AC=2;AF=1.00;AN=2;DB;DP=800;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,796:1.00:796
chr16	2138398	rs13332221	C	T	8574.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:338,238:0.41:576
chr16	2138422	rs13332222	C	G	9563.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:379,288:0.43:667
chr16	2140010	rs7203729	A	G	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:249,155:0.38:404
chr16	2140454	rs3087632	T	C	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:226,136:0.38:362
chr16	2140680	rs10960	T	C	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:172,130:0.43:302
chr16	2141396	rs11866494	C	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr16	2144299	rs34123233	T	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:79,53:0.40:132
chr16	2152651	rs9928278	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr16	2159996	rs9935526	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr16	2160503	rs71385734	T	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:89,42:0.32:131
chr16	2160973	rs116092985	A	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr16	2200184	rs78391622	C	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=0.856;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:67,47:0.41:114
chr16	2203456	rs26931	T	C	8051.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	2213760	rs3217255	G	GT	1394.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr16	2216073	rs8062006	G	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:49,48:0.49:97
chr16	2233565	rs889495	T	C	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	2255807	rs112805476	G	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr16	2259393	rs1129185	C	G	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:199,130:0.40:329
chr16	2259865	rs25852	C	G	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	2260921	rs76610224	C	T	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,61:0.63:97
chr16	2282256	rs26839	G	A	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	2318170	rs143373048	TA	T	3131.73	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:176,114:0.39:290
chr16	2328790	rs150928	G	A	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	2331430	rs149532	A	G	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	2334554	rs1183064	A	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	2337993	rs313909	G	A	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr16	2338363	rs313908	C	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	2342074	.	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.475;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr16	2349371	rs170447	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:131,102:0.44:233
chr16	2369485	rs5815117	C	CA	466.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=1.260;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr16	2373786	rs323060	C	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	2375961	rs46725	C	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	2480948	rs12923030	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	2485667	.	CATAT	C	232.75	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	2581081	rs71386675	C	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr16	2607730	rs200979773	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.995;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.95;MQRankSum=-1.006;QD=8.71;ReadPosRankSum=0.282;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr16	2608001	rs77373540	G	A	6788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=52.77;MQRankSum=-2.445;QD=9.44;ReadPosRankSum=-1.254;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:375,344:0.48:719
chr16	2645965	rs1005273	G	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	2802684	rs2240146	T	C	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	2808363	rs3094778	C	T	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	2810623	rs2285879	T	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	2812890	rs2240141	A	G	8319.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr16	2812939	rs2240140	C	A	8272.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.096;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=27.04;ReadPosRankSum=-0.630;SOR=0.297;set=HC	GT:AD:AF:DP	1/1:1,305:1.00:306
chr16	2814162	rs3094775	G	A	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr16	2815237	rs3094773	A	C	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr16	2818161	rs2301802	T	C	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	2818704	rs3094792	T	G	12008.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr16	2821573	rs8017	C	T	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:103,70:0.40:173
chr16	2825594	rs3094774	A	G	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	2836271	rs11643898	C	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr16	2854907	rs2015682	C	T	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	2867450	rs71386691	G	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.645;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr16	2868641	rs2074907	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	2891212	rs17854132	G	A	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	2891418	rs12596044	C	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr16	2891540	rs11859372	C	G	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:107,74:0.41:181
chr16	2891635	rs11860210	C	G	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:210,137:0.39:347
chr16	2892370	rs3810801	C	A	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:115,112:0.49:227
chr16	2903047	rs1054912	G	C	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	2903081	rs3743944	G	A	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:133,86:0.39:219
chr16	2903845	rs2074294	G	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:95,58:0.38:153
chr16	2949248	rs7281	T	C	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	2949269	rs34090411	C	CTT	781.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.36;ReadPosRankSum=0.752;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:9,36:0.80:45
chr16	2973249	rs11642228	T	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	2980361	rs11643417	A	G	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:392,262:0.40:654
chr16	2983516	rs61747747	C	T	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:144,98:0.40:242
chr16	2984542	rs76530521	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr16	2986233	rs9933986	G	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr16	2986289	rs9921808	C	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr16	2986323	rs9928222	T	C	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:158,106:0.40:264
chr16	2986894	rs113530410	G	T	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:174,102:0.37:276
chr16	2987074	rs140936158	G	GCTCTGAGAGCTGGTGTCCGCTGCTCCTCCCCTCCCATTTCTC	1003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.31;ReadPosRankSum=0.937;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr16	2987315	rs61747749	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr16	2988507	rs12373088	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr16	2989884	rs1060485	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr16	2989905	rs1060484	G	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr16	3016885	rs58462745	A	G	8070.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	3017124	rs11641195	C	A	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:80,80:0.50:160
chr16	3021116	rs4786365	T	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:129,99:0.43:228
chr16	3024188	rs2074528	T	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:92,63:0.41:155
chr16	3063264	rs2227269	C	T	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.178;QD=8.37;ReadPosRankSum=1.132;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:116,85:0.42:201
chr16	3065596	rs2257295	T	C	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:129,180:0.58:309
chr16	3065924	rs2269911	G	A	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:263,158:0.38:421
chr16	3071420	rs2232798	T	A	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	3073240	rs10508	G	T	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.164;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=19.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.471;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:38,40:0.51:78
chr16	3074336	rs116159486	A	C	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:219,145:0.40:364
chr16	3074426	rs56708449	G	C	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:264,164:0.38:428
chr16	3075633	rs2526260	G	C	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:30,99:0.77:129
chr16	3075701	rs2717664	C	T	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:100,182:0.65:282
chr16	3075999	rs2245000	C	G	15553.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr16	3078165	rs12448103	A	G	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-0.230;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:88,77:0.47:165
chr16	3078544	rs2079244	T	G	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	3078616	rs5815143	CATT	C	9122.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	3079685	rs2244494	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr16	3085335	rs7204908	G	C	4641.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:161,217:0.57:378
chr16	3085375	rs11077096	G	A	3956.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:119,181:0.60:300
chr16	3086447	rs7206805	C	G	20664.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	1/1:0,753:1.00:753
chr16	3097295	rs879734	C	T	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	3097596	rs3743936	T	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	3100095	rs10431961	C	T	7659.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr16	3105807	rs117271496	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr16	3106994	rs1064948	A	T	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	3108127	rs117500319	G	A	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:273,175:0.39:448
chr16	3117272	rs144171852	CTGTGTGTGTGTGTGTGTG	C,CTG	2308.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=63;set=Intersection	GT:AF:DP	1/1:1.00:56
chr16	3117354	rs1555001	T	A	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	3117937	rs2239303	G	A	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	3118865	rs12934561	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	3119020	rs371244098	A	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=30.599;MLEAC=1;MLEAF=0.500;MQ=43.81;MQRankSum=0.089;QD=7.09;ReadPosRankSum=-2.104;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:57,31:0.35:88
chr16	3119167	rs34184287	T	C	2164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=48.66;MQRankSum=-0.130;QD=13.04;ReadPosRankSum=-0.335;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:74,92:0.55:166
chr16	3119297	rs71818662	C	CG	4617.73	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:207,128:0.38:335
chr16	3119304	rs2981599	A	G	4678.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:214,128:0.37:342
chr16	3131566	rs2741927	G	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	3131663	rs4247354	A	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.69;QD=31.80;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	3131810	rs148052546	T	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.92;QD=30.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	3131895	rs117921794	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.04;QD=31.68;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	3131937	rs191732434	A	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.93;QD=46.58;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	3131940	rs58826170	C	CGG	1104.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	3141713	rs12935803	G	C	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	3142463	rs3810807	A	G	12787.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr16	3165425	rs909410	A	G	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	3166618	rs4785928	C	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.17;SOR=2.683;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	3191356	rs2735537	G	A	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	3197623	rs2735507	C	T	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	3199118	rs2238385	C	T	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	3199713	rs2735514	C	T	8231.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	3254418	rs61731432	C	G	7359.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:249,333:0.57:582
chr16	3254470	rs1834026	T	C	12307.77	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:341,549:0.62:890
chr16	3254972	rs2075851	T	C	5656.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:190,241:0.56:431
chr16	3265854	rs61743522	G	A	11493.77	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:465,524:0.53:989
chr16	3266071	rs2550401	A	G	11069.77	.	AC=1;AF=0.500;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	0/1:345,480:0.58:825
chr16	3266552	rs2741916	G	A	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:63,97:0.61:160
chr16	3273905	rs61731422	C	T	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:190,119:0.39:309
chr16	3282605	rs2075852	T	C	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:153,192:0.56:345
chr16	3293888	rs1231122	C	T	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:140,71:0.34:211
chr16	3293922	rs1231123	A	T	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:211,106:0.33:317
chr16	3294154	rs3974658	GT	G	2286.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:94,141:0.60:235
chr16	3294678	rs1231124	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr16	3296429	rs224204	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr16	3296616	rs224205	C	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:59,68:0.54:127
chr16	3297073	rs224206	A	G	6421.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:251,305:0.55:556
chr16	3297175	rs224207	T	C	10931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.954;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=-0.388;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:250,293:0.54:543
chr16	3297181	rs224208	C	T	10749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.87;ReadPosRankSum=-0.654;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:241,274:0.53:515
chr16	3298642	rs224211	G	A	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr16	3298865	rs224212	T	C	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:73,102:0.58:175
chr16	3299749	rs224213	G	A	5073.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:173,247:0.59:420
chr16	3302051	.	T	TA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=0.736;QD=7.21;ReadPosRankSum=-1.456;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	3405875	rs1009429	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	3405994	rs1228348	A	G	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr16	3406387	rs1218763	C	G	13073.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr16	3437268	rs11648996	G	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr16	3438865	rs11643983	G	A	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	3440390	rs4786412	C	T	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	3440394	rs27237	A	G	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	3441639	rs78047718	G	A	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-0.802;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr16	3441697	rs7204842	A	C	2708.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;QD=24.19;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	3444157	rs12448573	T	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	3444729	rs193240853	C	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr16	3445112	rs11077333	C	T	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:76,118:0.61:194
chr16	3452193	rs37811	T	G	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	3452453	rs377727247	C	CTT,CTTT	3293.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.99;MQRankSum=0.918;QD=25.93;ReadPosRankSum=2.261;SOR=0.765;set=HC	GT:AD:AF:DP	1/2:9,92,26:0.72,0.20:127
chr16	3455079	rs37813	T	C	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	3458219	rs37819	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	3490633	rs202008371	CA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.179;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.838;QD=1.08;ReadPosRankSum=0.670;SOR=1.877;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr16	3490922	rs2270494	G	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	3533577	rs1137454	C	G	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr16	3534892	rs13740	G	A	22527.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,804:1.00:804
chr16	3535116	rs4785936	T	C	7894.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	3535443	rs188884186	G	C	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:185,234:0.56:419
chr16	3535540	rs2240075	G	A	11521.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr16	3594162	rs60164526	GA	G	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.676;QD=2.56;ReadPosRankSum=0.860;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:57,37:0.39:94
chr16	3602227	rs56070390	AG	A	7022.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	3707409	rs1799892	G	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:107,54:0.34:161
chr16	3707747	rs1053874	G	A	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:144,101:0.41:245
chr16	3708193	rs1059857	G	A	3183.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:248,169:0.41:417
chr16	3708282	.	A	AT	1035.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-1.747;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:70,72:0.51:142
chr16	3726160	rs8050400	A	G	5446.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	3738887	rs2072379	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr16	3738961	rs2072380	T	G	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:132,93:0.41:225
chr16	3741122	rs8054755	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr16	3801964	rs55735138	G	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr16	3808052	.	T	TA	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.229;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr16	3811556	rs886528	A	G	12194.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr16	4015729	rs879620	C	T	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	4016676	rs2230742	A	G	10615.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	4027423	rs2072346	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	4027605	rs2240735	C	T	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	4027688	rs2531990	T	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	4027749	rs2601774	A	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	4033436	rs2230739	T	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:83,53:0.39:136
chr16	4039141	rs2072341	A	G	8481.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr16	4042449	rs2239307	C	T	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	4043292	rs2239309	C	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	4164364	rs2230738	C	T	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:266,167:0.39:433
chr16	4165432	rs2530898	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	4242093	rs8051399	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr16	4243020	rs72764668	G	A	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr16	4245393	rs11076822	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr16	4245426	rs11076823	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr16	4245693	rs10852643	A	G	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:177,105:0.37:282
chr16	4254479	rs4644864	G	A	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:144,66:0.31:210
chr16	4254523	rs60137128	C	T	2573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.130;QD=6.96;ReadPosRankSum=-2.179;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:233,137:0.37:370
chr16	4254699	rs62039297	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:193,123:0.39:316
chr16	4254725	rs8054937	A	G	6520.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr16	4254758	rs62039298	A	T	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,70:0.50:140
chr16	4256705	rs13334805	G	A	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:94,151:0.62:245
chr16	4256755	rs58255304	TC	T	6912.73	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:189,254:0.57:443
chr16	4257060	rs13334970	G	A	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:139,162:0.54:301
chr16	4257281	rs9922726	A	C	13780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.54;ReadPosRankSum=-2.037;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:313,358:0.53:671
chr16	4257286	rs9924822	T	C	14027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.06;ReadPosRankSum=-2.705;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:306,360:0.54:666
chr16	4258173	rs889807	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr16	4310468	rs251732	C	G	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	4386814	rs669561	T	C	23630.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:0,868:1.00:868
chr16	4393196	rs72766573	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:202,125:0.38:327
chr16	4405469	rs79336516	CT	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-2.003;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr16	4410867	rs140995663	TCACTGCTGGCCCCACCTCTCCA	T	2445.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr16	4414727	rs2277852	G	A	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:76,114:0.60:190
chr16	4414987	rs2277851	G	A	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:114,175:0.61:289
chr16	4415410	rs3747575	G	T	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:112,120:0.52:232
chr16	4415455	rs3747576	C	G	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:122,145:0.54:267
chr16	4431202	rs758044	A	G	23963.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	1/1:0,896:1.00:896
chr16	4432029	rs3810818	A	C	18527.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:1,694:1.00:695
chr16	4432499	rs371276157	G	A	8183.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:288,370:0.56:658
chr16	4445327	rs3747579	C	T	7399.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr16	4455675	rs3747580	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:83,42:0.34:125
chr16	4475868	rs2304631	A	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr16	4476089	rs1139652	T	C	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:133,70:0.34:203
chr16	4484328	rs4785962	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:58,24:0.29:82
chr16	4484396	rs1139653	A	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:154,77:0.33:231
chr16	4484613	rs4785964	A	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:115,67:0.37:182
chr16	4494549	rs12446640	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr16	4496973	rs2304633	T	A	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr16	4500544	rs2304634	C	T	1842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=0.295;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:156,98:0.39:254
chr16	4516092	rs3747584	T	C	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr16	4519548	rs62039231	A	G	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:106,85:0.45:191
chr16	4524060	rs3761680	C	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:79,78:0.50:157
chr16	4562351	rs8129	T	C	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=2.459;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:58,46:0.44:104
chr16	4562512	rs7665	A	G	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:221,146:0.40:367
chr16	4621725	rs35531180	GA	G	4827.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	4625126	rs9673241	G	A	3162.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:181,140:0.44:321
chr16	4625274	rs1256768	A	G	12794.77	.	AC=1;AF=0.500;AN=2;DB;DP=984;set=Intersection	GT:AD:AF:DP	0/1:382,599:0.61:981
chr16	4625938	rs2450386	A	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr16	4641814	rs5815211	AG	A	427.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr16	4649955	rs11076843	T	C	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=4.590;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	4649965	rs7403819	T	C	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	4660010	rs180916700	G	C	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:136,99:0.42:235
chr16	4660196	rs2306770	G	C	9446.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:352,453:0.56:805
chr16	4660247	rs863500	G	A	6002.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:224,287:0.56:511
chr16	4660342	rs841184	C	T	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	4664412	.	T	TG	47	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=12;HapScore=2;MGOF=10;MMLQ=28;MQ=60.39;NF=1;NR=3;PP=47;QD=16.0;SC=ACAAAAGGGGTGGGGGGGGTC;SbPval=0.68;Source=Platypus;TC=12;TCF=3;TCR=9;TR=4;WE=4664420;WS=4664402;set=Platypus	GT:AD:AF:DP	1/0:8,4:0.33:12
chr16	4664833	rs860889	T	G	8056.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	4674954	rs3747587	C	G	3139.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:230,165:0.42:395
chr16	4675116	rs1386092	G	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:138,79:0.36:217
chr16	4701850	rs58330296	T	C	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:146,95:0.39:241
chr16	4714639	rs1659479	T	C	4896.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:376,238:0.39:614
chr16	4714745	rs3890069	A	G	6232.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:407,301:0.43:708
chr16	4714836	rs3890068	T	C	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:128,99:0.44:227
chr16	4714998	rs150309093	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:76,71:0.48:147
chr16	4718509	rs114739310	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr16	4721288	rs78431070	T	G	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr16	4721468	rs715109	T	C	4903.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:353,253:0.42:606
chr16	4723451	rs2289314	A	G	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:131,77:0.37:208
chr16	4727400	rs377309672	G	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.026;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr16	4729992	rs143068748	G	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr16	4730136	rs74529238	C	T	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:236,105:0.31:341
chr16	4730264	rs80021013	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr16	4732990	rs137873490	G	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:110,72:0.40:182
chr16	4733282	rs78699679	C	T	3125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.040;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:210,158:0.43:368
chr16	4736316	rs841225	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:146,99:0.40:245
chr16	4744605	rs201516097	TT	GG	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.667;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-1.140;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:99,44:0.31:143
chr16	4747136	rs841215	G	C	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:121,79:0.40:200
chr16	4748351	rs192026783	G	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr16	4750849	rs78864110	G	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:154,65:0.30:219
chr16	4751004	rs117007233	G	A	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:158,113:0.42:271
chr16	4751045	rs863980	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:166,103:0.38:269
chr16	4751246	rs117674949	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr16	4752107	.	ACTG	A	3847.73	.	AC=1;AF=0.500;AN=2;DP=249;set=Intersection	GT:AD:AF:DP	0/1:139,101:0.42:240
chr16	4752134	rs841210	A	G	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:182,130:0.42:312
chr16	4755108	rs78074706	G	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	4755387	rs149367389	A	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr16	4774775	rs35182782	T	G	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:138,113:0.45:251
chr16	4777197	rs118150980	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr16	4786456	rs859314	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr16	4787987	rs859310	G	A	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:96,54:0.36:150
chr16	4790059	rs111697257	C	CA	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.276;QD=4.32;ReadPosRankSum=-0.608;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr16	4790273	rs859305	G	A	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:159,95:0.37:254
chr16	4792959	.	C	T	910.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:79,44:0.36:123
chr16	4794873	rs2075469	C	T	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:115,72:0.39:187
chr16	4796393	rs737700	A	G	4277.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:199,207:0.51:406
chr16	4796399	rs61746912	C	T	4375.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:212,203:0.49:415
chr16	4796418	rs61742417	G	A	4513.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:208,215:0.51:423
chr16	4796595	rs759988	T	C	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:129,108:0.46:237
chr16	4796871	rs2341988	A	G	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	4810344	rs76180687	C	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:181,125:0.41:306
chr16	4812705	rs61733564	A	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:237,125:0.35:362
chr16	4815425	rs4786548	T	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:88,58:0.40:146
chr16	4815501	rs12928542	G	C	4997.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:165,226:0.58:391
chr16	4815602	rs12919587	T	C	18388.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,421:1.00:421
chr16	4815608	rs4786549	A	G	17826.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr16	4833421	rs7201715	A	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr16	4833615	rs6500634	C	T	4228.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:169,198:0.54:367
chr16	4833861	rs112713748	T	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr16	4833970	rs759991	C	T	3337.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:126,157:0.55:283
chr16	4834165	rs8043579	C	T	2443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.189;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.44;ReadPosRankSum=-1.223;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:51,63:0.55:114
chr16	4834168	rs8043725	C	T	2433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.518;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.33;ReadPosRankSum=-2.256;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:47,62:0.57:109
chr16	4835794	rs3833435	G	GA	3099.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.04;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	4836155	rs71402568	G	GT	1378.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	4837362	rs741695	T	C	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:79,126:0.61:205
chr16	4837545	rs9673735	A	G	6789.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:287,321:0.53:608
chr16	4846068	rs2075465	T	C	6720.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	4846336	rs62036088	G	A	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:49,85:0.63:134
chr16	4847524	rs1982515	T	C	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	4847619	.	T	TGGGGTACACCAGACCCCAAGACTGGGGCGCTCTGAGGGCGTGGCAGGGCCCTCAGAACCCCTGCCCACTGTG	3443.73	.	AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=83.99;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	4847640	.	GT	AC	1314	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=1;MMLQ=15;MQ=59.89;NF=25;NR=16;PP=1314;QD=33.3528749966;SC=AGACCCCAAGGTTGGGGCGCT;SbPval=0.41;Source=Platypus;TC=96;TCF=62;TCR=34;TR=41;WE=4847649;WS=4847630;set=Platypus	GT:AD:AF:DP	1/0:55,41:0.43:96
chr16	4847658	.	T	C	333	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=4;HapScore=1;MGOF=15;MMLQ=20;MQ=59.9;NF=21;NR=14;PP=333;QD=10.5077489299;SC=GCTCTGAGGGTGTGGCAAGGA;SbPval=0.41;Source=Platypus;TC=116;TCF=74;TCR=42;TR=35;WE=4847666;WS=4847648;set=Platypus	GT:AD:AF:DP	1/0:81,35:0.30:116
chr16	4848494	rs8053790	C	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	4848807	rs3214843	TAA	T	3207.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:126,87:0.41:213
chr16	4849705	rs11553876	C	T	5293.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:158,243:0.61:401
chr16	4851862	rs75558393	G	A	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr16	4852579	.	AGGCCGCCGCCGAGCGCCCTCCCCACC	A	2971	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=0;NR=8;PP=2971;QD=20;SC=CCATGGCCGCAGGCCGCCGCC;SbPval=1.0;Source=Platypus;TC=18;TCF=1;TCR=17;TR=8;WE=4852612;WS=4852569;set=Platypus	GT:AD:AF:DP	0/1:10,8:0.44:18
chr16	4855279	rs8064024	A	G	7159.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	4861709	rs2085329	G	C	7574.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr16	4867565	rs6500635	A	G	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	4872760	rs11861487	C	T	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:66,99:0.60:165
chr16	4872970	rs2075466	G	C	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:100,116:0.54:216
chr16	4873743	.	CA	C	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.173;QD=3.21;ReadPosRankSum=0.693;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:53,38:0.42:91
chr16	4897103	rs111601308	C	G	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr16	4897153	rs2072595	A	G	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	4903243	rs8056889	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	4908504	rs3747613	C	G	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	4908667	rs3747614	A	G	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:121,185:0.60:306
chr16	4908990	rs117052750	A	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:109,64:0.37:173
chr16	4918732	rs56159834	A	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr16	4920335	rs35103368	A	G	6366.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:196,279:0.59:475
chr16	4920412	rs7200395	T	C	5741.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:184,265:0.59:449
chr16	4920661	rs6500637	T	C	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:56,77:0.58:133
chr16	4923089	.	T	C	2064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=4.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=1.384;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:120,97:0.45:217
chr16	4923089	.	TCG	CCA	1423	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=36;NR=52;PP=1423;QD=16.7780440325;SC=GTCAGTTTGCTCGGGTCACAT;SbPval=0.44;Source=Platypus;TC=208;TCF=81;TCR=127;TR=88;WE=4923099;WS=4923079;set=Platypus	GT:AD:AF:DP	1/0:120,88:0.42:208
chr16	4923091	rs2251666	G	A	7635.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.02;ReadPosRankSum=1.729;SOR=0.559;set=HC	GT:AD:AF:DP	1/1:1,211:1.00:212
chr16	4924160	rs12445265	A	G	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:58,93:0.62:151
chr16	4927285	rs12444761	C	T	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:83,121:0.59:204
chr16	4930100	rs1876359	C	T	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	4935146	rs1049206	C	T	7664.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:383,378:0.50:761
chr16	4938160	rs2734742	T	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	4939116	rs8060738	C	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-0.549;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr16	4939225	rs140073794	G	GTT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	4939243	rs200809589	T	G	105.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.32;MQRankSum=-0.253;QD=21.18;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr16	4940366	rs200582710	A	G	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:86,62:0.42:148
chr16	4940387	rs11644917	G	A	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr16	4940443	rs75403547	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr16	4940809	rs2471844	A	G	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	4940989	rs2471843	A	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	4944424	rs78894793	G	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:170,86:0.34:256
chr16	4944518	rs1876363	C	G	10561.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr16	4945221	rs12709119	A	G	10467.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	4945687	rs35340520	G	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:183,128:0.41:311
chr16	4947534	rs8051246	T	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	4948936	rs12443906	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr16	4949440	rs76087945	G	A	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr16	4950940	rs2075635	C	T	5311.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:350,255:0.42:605
chr16	4961003	rs8057613	A	G	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr16	5037498	.	T	TG	526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-0.732;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:40,30:0.43:70
chr16	5041778	rs2972265	T	C	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr16	5046787	rs2270260	G	C	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	5050897	rs2286966	G	C	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	5055864	rs55930593	CA	C	958.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.622;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.137;QD=7.92;ReadPosRankSum=1.185;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:38,83:0.69:121
chr16	5056122	rs2302555	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	5061085	rs2908669	A	C	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	5075542	rs887854	G	A	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	5077395	rs71402581	TGGGAGGA	T	2094.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.076;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.245;QD=27.20;ReadPosRankSum=-0.353;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:2,75:0.97:77
chr16	5077794	rs2937112	G	T	5436.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.822;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=16.402;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=3.094;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:4,207:0.98:211
chr16	5078841	rs1995278	T	C	8413.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr16	5080558	rs150783384	C	A	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.980;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:102,39:0.28:141
chr16	5083483	rs2972272	T	C	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	5094570	rs8055684	G	A	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	5122072	rs112683515	G	GGTCT	3071.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:126,82:0.39:208
chr16	5122191	rs34061670	C	CG	3250.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	5123270	rs62036244	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,54:0.74:73
chr16	5125365	rs4786590	C	T	8541.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	5127335	rs11076869	T	A	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	5517175	rs34212245	T	TTC	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=0.705;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr16	5649140	rs71404537	T	TTAGGAAA	20645.73	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr16	5649187	rs17138179	A	G	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:151,110:0.42:261
chr16	7102036	rs35212568	CT	C	3243.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:165,111:0.40:276
chr16	7645713	rs17757439	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr16	7645808	rs12935264	C	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	7657373	rs1507010	A	G	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:125,133:0.52:258
chr16	7657432	rs4616299	A	G	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr16	7703785	rs3217052	G	GCT	4086.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:109,142:0.57:251
chr16	7704032	rs2302216	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.49;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	7704032	.	TGGTCTTGACTCCCCCTCCG	CGGTCTTGACTCCCCCTCCG,CGGTCTTGATTCCCCCTCCA	624	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=9,1;NR=26,12;PP=214,624;QD=7.10774892992;SC=GAGCGCATGATGGTCTTGACT;SbPval=0.56;Source=Platypus;TC=35;TCF=9;TCR=26;TR=35,13;WE=7704059;WS=7704022;set=Platypus	GT:AF:DP	0/1:1.00:35
chr16	7715108	rs8064206	T	C	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	7721778	rs2286541	C	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr16	7726691	rs2191134	A	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	7743418	rs60812796	C	CTT	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.249;QD=6.08;ReadPosRankSum=-0.790;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:65,51:0.44:116
chr16	7758948	rs2270127	G	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr16	7759164	rs7196923	T	C	7876.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.93;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr16	7760846	rs5815427	T	TA	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.157;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	8619750	rs7198383	C	T	2285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=4.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-0.921;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:70,103:0.60:173
chr16	8620014	rs62018861	G	C	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:116,73:0.39:189
chr16	8620096	rs9922116	T	C	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	8719738	rs62019681	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr16	8728953	rs1731044	C	T	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	8729124	rs2302607	G	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:58,71:0.55:129
chr16	8729254	rs3108687	C	A	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	8729275	rs1641040	T	C	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	8729323	rs1731043	A	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	8732733	rs1362345	C	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	8732882	rs5815485	CA	C	5688.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr16	8733071	rs1641048	A	G	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	8734799	.	A	C	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=7.715;MLEAC=1;MLEAF=0.500;MQ=61.94;MQRankSum=2.930;QD=14.76;ReadPosRankSum=0.000;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr16	8734802	.	G	GAT	208.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.600;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=62.33;MQRankSum=-2.294;QD=10.99;ReadPosRankSum=1.902;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr16	8734803	.	G	GGA,C	721.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.33;QD=37.99;SOR=2.948;set=HC	GT:AD:AF:DP	1/2:0,7,12:0.37,0.63:19
chr16	8734807	rs62030896	G	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=62.42;MQRankSum=2.390;QD=19.91;ReadPosRankSum=-1.903;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr16	8734811	rs62030897	A	C	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=63.48;MQRankSum=2.693;QD=29.47;ReadPosRankSum=-2.018;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr16	8734830	.	G	GCTGGCTGT,GCTGTCTGGCTGT	1808.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=43;set=Intersection	GT:AF:DP	1/2:0.47,0.53:34
chr16	8735120	rs8062990	T	C	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:61,82:0.57:143
chr16	8735200	rs8045911	G	A	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:56,99:0.64:155
chr16	8735212	rs1629322	T	C	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	8735245	rs1641055	C	T	6250.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	8735355	rs1641056	A	G	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	8736028	rs1614616	T	C	8082.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	8736150	rs1615559	A	C	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	8736246	rs1731007	G	A	14606.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr16	8736499	rs1618219	C	T	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	8738350	rs11645418	C	T	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:59,116:0.66:175
chr16	8738398	rs1641065	A	G	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr16	8738427	rs1641066	T	C	8960.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr16	8738499	rs1731000	G	A	7275.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	8738579	rs1641067	A	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	8738622	rs9933132	C	T	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	8739954	rs1641070	G	A	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	8740015	rs1730994	A	C	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	8740151	rs1641071	G	A	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:208,112:0.35:320
chr16	8740235	rs1730993	T	C	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:208,130:0.38:338
chr16	8740418	rs1641072	T	C	8960.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr16	8740503	rs1730992	G	A	5735.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	8740653	rs1641073	C	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	8829715	rs1640998	T	C	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:114,73:0.39:187
chr16	8839954	rs1731017	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	8840025	rs2103340	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	8841794	rs753071	T	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	8841960	rs1641010	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	8842128	rs1641011	T	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	8851767	rs12930438	C	T	6902.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	8858580	rs2302608	T	A	8031.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr16	8858700	rs112675542	GCA	G	724.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=3.242;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.453;QD=1.73;ReadPosRankSum=0.026;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:355,63:0.15:418
chr16	8862212	rs8049072	C	T	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	8862506	rs1273406	C	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	8862592	rs1273407	T	C	5428.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	8868776	rs1641022	C	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr16	8873456	rs1079348	T	C	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr16	8873493	rs1079349	C	T	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	8873572	rs41305755	G	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-2.046;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr16	8873576	rs45545237	C	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-1.311;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr16	8895909	rs2304471	C	A	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:141,171:0.55:312
chr16	8896066	rs2304470	G	C	6720.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	8898458	rs8053440	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.485;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr16	8904877	rs34742119	T	TATG	2956.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	8907025	rs3743807	C	T	3629.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:273,187:0.41:460
chr16	8907145	rs9924186	G	T	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	8948974	rs6898	T	C	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	8952117	rs4985008	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:64,49:0.43:113
chr16	8952248	rs988065	A	G	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	8953081	rs8097	C	G	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.498;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=1.506;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:68,40:0.37:108
chr16	8988386	rs28362503	CG	C,CGG	398.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/2:0.26,0.68:19
chr16	8988777	rs2304467	C	G	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:48,77:0.62:125
chr16	8989403	rs1677473	A	G	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr16	8989511	rs61731196	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:193,121:0.39:314
chr16	8992342	rs2304465	G	A	5002.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:322,256:0.44:578
chr16	8992828	rs2289109	G	T	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,70:0.58:121
chr16	8992868	rs2437724	AC	CA	10394.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	8994563	rs2447919	C	T	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr16	8995177	rs199579856	GAAA	G,GAA	1421.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=29.62;SOR=1.067;set=HC	GT:AD:AF:DP	1/2:0,28,20:0.58,0.42:48
chr16	8995927	rs2304466	G	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,71:0.65:110
chr16	8996377	rs2447918	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr16	8998571	rs2437727	G	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr16	9004564	rs2447916	C	A	16932.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:1,610:1.00:611
chr16	9010213	rs7195624	T	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr16	9010260	rs138207509	ATTTTCTGAATTAGGTC	A	1141.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr16	9010446	rs57510291	A	AC	3074.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	9014350	rs1677470	T	C	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	9014385	rs7189170	G	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr16	9014434	rs2447912	T	G	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	9015252	rs30761	A	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.02;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	9015252	.	ATTTCAT	TTTTCAC,TTTTCAT	396	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=10,17;NR=14,25;PP=396,219;QD=18.7278281193;SC=CCCATTTATGATTTCATTGCT;SbPval=0.5;Source=Platypus;TC=43;TCF=17;TCR=26;TR=24,42;WE=9015266;WS=9015242;set=Platypus	GT:AF:DP	0/1:0.56:43
chr16	9015258	rs9940652	T	C	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=0.298;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:17,26:0.60:43
chr16	9017061	rs139138924	T	TACAACGATGTGGGGGTTTGTAGTTGCATCATTTAA	5878.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	9030444	rs1382390	C	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	9210373	rs8045589	A	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr16	9862556	rs11866328	G	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr16	9943471	rs56155349	T	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr16	10524656	rs56252625	GGAC	G	8597.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	10532211	rs1532824	A	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	10566146	rs4453490	G	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	10574829	rs12596111	A	T	10493.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:1,385:1.00:386
chr16	10575824	rs1970817	C	A	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	10625605	rs149380057	GATGAATGA	G	1750.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	10625887	rs7195563	C	T	8670.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	10625997	rs7194566	G	A	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	10626059	rs35914943	AG	A	4420.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr16	10627085	rs4780939	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	10631945	rs1504883	G	A	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	10631985	rs1504884	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	10769958	rs2719710	T	C	6039.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:236,288:0.55:524
chr16	10770075	rs2719711	A	G	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:93,126:0.58:219
chr16	10770091	rs2719712	T	C	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:73,96:0.57:169
chr16	10775855	rs12918646	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,76:0.53:144
chr16	10783088	.	TA	T	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.298;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:149,47:0.24:196
chr16	10788106	rs2251984	A	G	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:56,81:0.59:137
chr16	10788129	rs2251985	G	T	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:78,113:0.59:191
chr16	10788406	rs9922129	G	T	5439.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:179,238:0.57:417
chr16	10855521	rs36097495	CT	C	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=6.387;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.890;QD=1.02;ReadPosRankSum=0.276;SOR=1.344;set=HC	GT:AD:AF:DP	0/1:147,42:0.22:189
chr16	10855739	rs1084544	G	A	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:103,62:0.38:165
chr16	10861914	rs2233541	T	C	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr16	10862964	rs11716	A	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:136,82:0.38:218
chr16	10864350	rs9925173	T	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:55,29:0.35:84
chr16	10989374	rs11074937	C	T	6954.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	10992715	rs6498121	T	G	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	10995850	rs6498124	G	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr16	10995933	rs8046121	A	G	7072.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	10996332	rs6498125	C	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	11002133	rs4781018	C	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	11002904	rs2228238	G	A	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	11002927	rs7197779	A	G	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr16	11003157	rs45481191	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr16	11004150	rs4781019	C	T	3840.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	11010150	rs6498130	G	T	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	11015906	rs6498134	A	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	11063214	.	CT	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=4.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.970;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:43,23:0.35:66
chr16	11064865	rs35498388	AT	A	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=9.163;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.090;QD=3.93;ReadPosRankSum=-0.012;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:44,32:0.42:76
chr16	11136048	rs2302557	C	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:75,55:0.42:130
chr16	11137740	.	G	GA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.103;QD=0.47;ReadPosRankSum=1.576;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:90,19:0.17:109
chr16	11137978	rs8052325	A	G	3271.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:193,154:0.44:347
chr16	11154577	rs112716725	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.308;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr16	11154770	rs2286973	G	A	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-1.391;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:123,69:0.36:192
chr16	11214668	rs3217121	AAC	A	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.132;QD=2.90;ReadPosRankSum=0.000;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:48,14:0.23:62
chr16	11250351	rs77658795	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr16	11250413	rs7189563	C	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:75,32:0.30:107
chr16	11349403	rs27829	A	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	11350059	rs27831	T	C	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	11350155	rs33977706	C	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	11361895	rs8043625	C	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	11362729	rs11640138	G	A	6064.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	11367143	rs438289	G	A	8265.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	11367154	rs429744	C	T	8373.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	11367195	rs35598356	G	C	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	11367477	rs2301127	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	11369930	rs1646022	C	G	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	11370027	rs200072135	G	A	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:164,245:0.60:409
chr16	11374866	rs737008	G	T	5115.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	11439303	rs12149160	G	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	11439639	rs918737	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	11439679	rs918738	C	G	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	11439733	rs918739	G	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	11444403	rs2032929	T	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	11444430	rs2032930	T	G	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	11444454	rs57767216	GA	G	4260.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=44.85;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	11444469	rs2032931	C	T	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=39.66;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	11537347	.	A	AAGAGAGAGAGAGAG	4338.73	.	AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;QD=108.47;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	11537471	rs12925081	C	T	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;MQ=60.31;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	11540596	rs4359463	A	C	6582.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr16	11540712	rs4500747	T	C	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	11541685	rs4296278	A	G	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	11541896	rs4238608	G	A	8431.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr16	11542894	rs4467099	C	T	9424.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	11544673	rs12932948	G	A	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	11544741	rs6498192	G	A	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	11544824	rs6498194	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	11550979	rs4559925	C	T	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	11553842	rs7206698	G	C	9762.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:1,355:1.00:356
chr16	11554737	rs8046254	C	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	11554867	rs8050530	C	T	4939.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	11555016	rs6498202	C	G	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr16	11556121	rs4254342	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	11645776	rs35493477	CT	C	493.74	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,30:0.91:33
chr16	11647492	rs4280262	T	C	4206.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:173,195:0.53:368
chr16	11650325	rs3743582	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:81,101:0.55:182
chr16	11690308	rs113749419	A	AGAGGAGGAG	1134.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr16	11797365	rs147693005	TACAC	T	1215.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.22;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr16	11820888	rs148241045	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr16	11828018	rs4780398	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	11836398	rs3743587	C	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	11836508	rs3743588	G	A	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	11850003	rs7198247	A	G	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:116,92:0.44:208
chr16	11852354	rs8743	A	C	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:204,165:0.45:369
chr16	11859341	rs7199993	A	G	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:140,71:0.34:211
chr16	11861597	.	T	A	175.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr16	11862376	rs34038330	G	GA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.289;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr16	11870137	rs34393518	T	TA	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr16	11870560	rs35675698	T	C	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:48,75:0.61:123
chr16	11940390	rs8052900	T	C	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	11940764	rs1019814	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	11940829	rs1019813	C	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	11945231	rs2075158	T	C	15443.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr16	12009150	rs28653099	C	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	12009279	rs424518	A	G	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	12009304	rs11544193	C	A	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:4,304:0.99:308
chr16	12009530	.	CCCGCCGCCG	C,CCCGCCGCCGCCG	4372.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=204;set=Intersection	GT:AF:DP	1/2:0.64,0.29:128
chr16	12009614	rs435108	G	A	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	12009781	rs434762	G	A	22332.77	.	AC=2;AF=1.00;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	1/1:0,836:1.00:836
chr16	12021332	rs256390	G	A	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	12031346	rs637136	A	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,38:0.35:109
chr16	12031390	rs677507	C	T	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	12031448	rs636664	T	C	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.04;QD=25.90;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr16	12060163	rs373496	A	G	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	12070486	rs446289	T	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	12136954	rs1703492	A	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	12136993	.	C	T	521.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr16	12142130	rs56363861	C	T	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	12142172	rs3826097	T	G	9038.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=1.847;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	12142175	rs3826098	C	G	9120.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	12145683	rs373216147	CT	C	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=2.405;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:81,37:0.31:118
chr16	12154875	rs3894905	G	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr16	12162969	rs1641843	A	G	5815.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	12172873	rs4352067	C	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr16	12181510	rs11648468	C	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr16	12181702	rs11648228	G	T	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:208,158:0.43:366
chr16	12183500	rs12596549	C	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr16	12223637	rs62038898	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr16	12296803	rs1701115	G	T	10944.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr16	12297234	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=1;MGOF=24;MMLQ=16;MQ=57.82;NF=298;NR=212;PP=2962;QD=20;SC=GGAGGTGACAACTCTGAAGTT;SbPval=0.78;Source=Platypus;TC=1315;TCF=698;TCR=617;TR=510;WE=12297255;WS=12297224;set=Platypus	GT:AD:AF:DP	0/1:805,510:0.39:1315
chr16	12297247	.	A	ATAGTGTGGCCCTGATGTCAGATGGACTGGTGGCATTGGAGGTGACGTCTCTGAAGTTGTGTAGTGAGGCCTTGCTGTCAGGTGGACTGGTGGCATTGGAGGTGACAGCTCTGAAGTTGTGTAGTGTGACCCTGGTGTCAGGTGGACTGGTGGCATTGGAGGTGACAGCTCTGAAGTTGTG	22551.73	.	AC=2;AF=1.00;AN=2;DP=844;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=27.24;SOR=0.614;set=HC	GT:AD:AF:DP	1/1:818,10:0.01:828
chr16	12297313	.	T	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=3;HapScore=1;MGOF=41;MMLQ=18;MQ=56.26;NF=219;NR=321;PP=2962;QD=20;SC=TTGTGTAGTGTGGCCTTGCTG;SbPval=0.81;Source=Platypus;TC=1240;TCF=588;TCR=652;TR=540;WE=12297321;WS=12297303;set=Platypus	GT:AD:AF:DP	1/0:700,540:0.44:1240
chr16	12297353	.	GT	AG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=1;MMLQ=28;PP=2944;QD=20;SC=TGGAGGTGACGTCTCTGAAGT;SbPval=0.94;Source=Platypus;WE=12297362;WS=12297343;set=Platypus	GT:AD:AF:DP	1/0:680,311:0.31:991
chr16	12297562	rs1701113	G	A	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	12371915	rs12448443	T	C	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:74,105:0.59:179
chr16	12449855	rs7190509	T	C	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,50:0.77:65
chr16	12449925	rs11075062	C	G	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:56,119:0.68:175
chr16	12450163	rs4781211	C	G	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr16	12492133	rs8055030	C	T	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:64,87:0.58:151
chr16	12492153	rs8055044	C	G	3956.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:93,114:0.55:207
chr16	12536703	rs11075077	A	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	12536958	rs34889591	G	A	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=-0.262;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:18,43:0.70:61
chr16	12536988	rs11646776	A	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr16	12537037	.	C	T	89.77	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr16	12758966	rs1713480	T	C	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	12759027	rs1713479	A	G	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	13002359	rs9938751	T	C	9128.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	13297242	rs13331224	C	T	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	14016109	rs34861763	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=8.134;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.794;QD=0.59;ReadPosRankSum=-1.963;SOR=0.085;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr16	14026007	rs254942	G	A	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	14026902	.	CAAA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=2.216;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr16	14031520	rs31869	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	14530726	rs113631743	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:71,44:0.38:115
chr16	14675943	rs72787692	C	G	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:74,44:0.37:118
chr16	14700254	rs4782156	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	14742400	rs11546303	T	G	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:175,84:0.32:259
chr16	14749080	rs34400420	A	AT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.455;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr16	14951630	.	CTT	C,CT	773.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.97;MQRankSum=-0.486;QD=10.75;ReadPosRankSum=-0.424;SOR=0.829;set=HC	GT:AD:AF:DP	1/2:13,23,36:0.32,0.50:72
chr16	14968859	rs77578560	C	T	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-1.440;QD=6.95;ReadPosRankSum=-0.022;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:175,108:0.38:283
chr16	15068908	rs28418438	C	G	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.847;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=1.749;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:97,33:0.25:130
chr16	15083131	rs4985166	A	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:152,46:0.23:198
chr16	15083383	rs139221308	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr16	15083561	rs145963881	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr16	15083569	.	C	CGCA	490.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr16	15083868	rs9928601	A	C	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-0.174;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,30:0.53:57
chr16	15090275	rs11279533	ATATTATATG	A	814.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr16	15091589	rs11421981	C	CT	1830.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:73,109:0.60:182
chr16	15092116	rs6498535	C	T	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.634;QD=8.21;ReadPosRankSum=-0.794;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr16	15092122	rs139576977	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.614;QD=7.05;ReadPosRankSum=-0.025;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr16	15100202	rs71271216	A	G	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:99,113:0.53:212
chr16	15110077	rs4262938	C	T	4915.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:224,230:0.51:454
chr16	15116400	rs4985161	T	A	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:85,94:0.53:179
chr16	15116521	rs4985160	C	T	5941.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:360,302:0.46:662
chr16	15116625	rs1058637	G	T	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:163,125:0.43:288
chr16	15120411	rs62039476	T	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:79,37:0.32:116
chr16	15122812	rs112323280	C	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.467;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:233,50:0.18:283
chr16	15129940	rs3198697	C	T	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:60,104:0.63:164
chr16	15135071	rs7498279	G	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	15135269	rs9926473	T	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	15155898	rs2966157	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr16	15159022	.	CA	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-4.496;QD=0.79;ReadPosRankSum=-0.653;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:177,56:0.24:233
chr16	15168760	rs4985147	T	C	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-1.686;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr16	15173746	rs2941253	G	A	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr16	15178688	rs8061051	C	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr16	15187912	rs11075256	G	C	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.60;QD=27.11;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	15493046	rs153001	G	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	15501658	rs200953251	C	CT	1490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=0.355;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:139,101:0.42:240
chr16	15501787	rs72774859	C	T	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:108,82:0.43:190
chr16	15596142	rs12448500	G	C	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	15695059	rs2071331	A	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr16	15696480	rs71293163	A	AAGGAAAGAAGGAGGGAGGCAGAG	1901.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.83;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	15705605	rs7185421	A	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr16	15718591	rs2071333	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr16	15724113	rs3752422	C	T	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:62,87:0.58:149
chr16	15727459	rs5815838	AT	A	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.665;QD=9.12;ReadPosRankSum=-0.738;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:44,70:0.61:114
chr16	15730245	rs4781677	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr16	15758744	.	C	CTT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.657;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr16	15771601	rs6498567	T	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr16	15781054	rs8044738	A	G	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:81,109:0.57:190
chr16	15811023	rs1050163	C	T	8421.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:331,403:0.55:734
chr16	15811062	rs1050162	C	T	8380.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:332,401:0.55:733
chr16	15813211	rs11646134	G	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:83,72:0.46:155
chr16	15813633	rs17284411	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr16	15813945	rs2075512	C	T	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:77,132:0.63:209
chr16	15818141	rs2075511	A	C	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:66,88:0.57:154
chr16	15818310	rs11130	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr16	15818991	.	TA	T	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.143;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr16	15820863	rs16967494	C	T	3798.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:247,187:0.43:434
chr16	15838940	rs2384934	G	C	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:173,119:0.41:292
chr16	15839034	rs1050113	G	A	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:166,124:0.43:290
chr16	15843899	rs6498570	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:120,83:0.41:203
chr16	15850204	rs2272554	A	G	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr16	15853596	rs2280764	C	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr16	15869801	rs2072619	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr16	15967236	rs8056910	T	C	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr16	15973654	rs8045082	G	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.341;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	16108282	rs4148337	T	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	16108539	.	G	T	87.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr16	16110244	rs185005	C	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=3.091;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	16110253	rs246215	T	C	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=2.904;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	16126758	rs924137	C	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=7.276;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	16126764	rs924138	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=7.276;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	16161976	rs35604	G	A	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:240,153:0.39:393
chr16	16162019	rs35605	T	C	3774.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:297,194:0.40:491
chr16	16184232	rs2074087	C	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,53:0.48:110
chr16	16192565	rs2239995	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr16	16200756	rs11075296	C	T	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	16205141	rs4780592	A	G	14387.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.71;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr16	16205141	.	ACA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=1;MGOF=52;MMLQ=22;MQ=59.95;NF=132;NR=75;PP=2947;QD=20;SC=GCTGGGTGGCACAGTGCTGGT;SbPval=0.62;Source=Platypus;TC=219;TCF=135;TCR=84;TR=207;WE=16205151;WS=16205131;set=Platypus	GT:AD:AF:DP	1/1:12,207:0.95:219
chr16	16205143	rs4780593	A	G	14625.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.85;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr16	16205161	rs4238623	G	A	15463.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr16	16205167	rs111263400	G	GTGGGGC	9533.73	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:4,350:0.99:354
chr16	16205449	rs3851716	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	16219596	rs113369901	G	GAA,GAAAAAAAA	4947.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.60;ReadPosRankSum=-0.248;SOR=1.255;set=HC	GT:AD:AF:DP	1/2:2,80,91:0.46,0.53:173
chr16	16230290	rs212087	G	A	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	16243973	rs3902401	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr16	16244129	rs212097	T	C	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	16251435	rs3896244	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	16253283	rs56822940	GC	G	6029.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.875;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.71;ReadPosRankSum=-1.088;SOR=0.208;set=HC	GT:AD:AF:DP	1/1:2,208:0.99:210
chr16	16255195	rs3851721	T	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	16263837	rs7201980	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	16267079	rs11866320	A	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr16	16271357	rs6416668	T	C	12900.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr16	16272670	rs7500834	T	C	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	16280921	rs8056103	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	16284272	rs7193932	C	T	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	16286614	rs6498618	G	C	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	16291816	rs58394656	G	C	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.83;SOR=7.024;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	16291858	rs12929920	G	C	2794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.868;QD=8.90;ReadPosRankSum=1.113;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:178,136:0.43:314
chr16	16291871	rs9940089	G	C	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:217,163:0.43:380
chr16	16291971	rs9940825	C	T	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:305,201:0.40:506
chr16	16291983	rs9930886	A	G	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:279,184:0.40:463
chr16	16297168	rs150203830	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr16	16306192	rs116914614	G	T	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.40;MQRankSum=-0.568;QD=13.39;ReadPosRankSum=-1.101;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:28,55:0.66:83
chr16	17221423	rs4782034	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	17221755	rs3812961	T	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	17228368	rs12708815	G	A	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr16	17432427	rs4782002	T	C	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:167,172:0.51:339
chr16	18532238	rs200294351	C	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.514;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=42.85;MQRankSum=2.658;QD=5.13;ReadPosRankSum=-0.429;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr16	18549711	.	C	CAA	879.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.73;MQRankSum=-1.287;QD=17.25;ReadPosRankSum=-0.611;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:9,42:0.82:51
chr16	18804737	rs2650628	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.414;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr16	18804753	rs34143424	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.29;ReadPosRankSum=-1.719;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr16	18823192	rs2291662	A	G	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:263,255:0.49:518
chr16	18823379	rs2606556	T	C	7539.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	18839362	rs12445870	T	C	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.466;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:111,127:0.53:238
chr16	18839496	rs12448649	G	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr16	18849858	rs35168818	C	T	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:153,147:0.49:300
chr16	18858727	rs2650615	A	C	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:147,131:0.47:278
chr16	18860472	rs12931729	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr16	18861335	rs2650613	A	G	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:91,95:0.51:186
chr16	18865324	rs59703706	ATAGGAGG	AAGGAGG,A	1319.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=69;set=Intersection	GT:AF:DP	0/1:0.54:65
chr16	18865326	rs58740437	AGGAGGC	A	1319.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.62;ReadPosRankSum=-0.430;SOR=1.405;set=HC	GT:AD:AF:DP	0/1:29,35:0.55:64
chr16	18865332	.	C	A	1897	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=4;MGOF=6;MMLQ=28;MQ=60.0;NF=4;NR=21;PP=1897;QD=77.2708485019;SC=GCATAGGAGGCTCCTACTGTC;SbPval=0.71;Source=Platypus;TC=52;TCF=10;TCR=42;TR=25;WE=18865340;WS=18865314;set=Platypus	GT:AD:AF:DP	1/0:27,25:0.48:52
chr16	19041491	rs4381586	T	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	19041595	rs28583298	G	A	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	19049378	rs8043993	A	G	7205.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	19051520	rs11074355	A	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	19056069	rs55792501	A	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.93;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	19056769	rs12051270	G	A	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	19067933	rs17854511	G	A	6037.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr16	19079095	rs4531717	T	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	19079998	.	AAG	A	140	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=17;HapScore=2;MGOF=40;MMLQ=26;MQ=60.0;NF=4;NR=2;PP=140;QD=23.8333333333;SC=AAAAAAAAAAAAGAAATTTCA;SbPval=0.3;Source=Platypus;TC=11;TCF=9;TCR=2;TR=6;WE=19080007;WS=19079991;set=Platypus	GT:AD:AF:DP	1/0:5,6:0.55:11
chr16	19080184	rs4630530	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr16	19080227	rs75015998	C	CTG	2424.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	19083221	rs4782202	A	G	6649.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr16	19085298	rs11074359	C	T	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:118,115:0.49:233
chr16	19183957	rs113855661	C	CT	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.120;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:158,84:0.35:242
chr16	19195130	rs11541511	C	T	12567.77	.	AC=1;AF=0.500;AN=2;DB;DP=1197;set=Intersection	GT:AD:AF:DP	0/1:607,585:0.49:1192
chr16	19222713	rs229018	T	G	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:151,103:0.41:254
chr16	19222946	rs10716359	AT	A	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=7.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.335;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr16	19236181	rs2072076	C	T	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:53,67:0.56:120
chr16	19278429	rs11379176	T	TAA,TAAA	503.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=29.63;SOR=2.179;set=HC	GT:AD:AF:DP	1/2:0,9,8:0.53,0.47:17
chr16	19309812	rs1548448	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr16	19333111	rs8049175	T	C	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	19333153	rs8047832	A	C	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	19333202	rs79117596	C	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:129,107:0.45:236
chr16	19333224	rs8048432	G	A	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	19333241	rs6497343	G	C	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	19455284	rs8052298	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	19455318	rs144130376	AATGGATGG	A	2914.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	19455615	rs4782247	G	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	19460842	rs6497373	A	G	9969.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr16	19471665	rs6497375	T	C	12146.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr16	19481234	rs4444328	T	G,TG	2658.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=97;set=Intersection	GT:AF:DP	1/2:0.80,0.20:89
chr16	19485435	rs78883216	C	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr16	19503598	rs1475962	C	T	6438.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	19503770	rs1967950	T	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	19503773	rs1967951	T	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	19505406	rs1475964	T	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	19505730	rs2245423	T	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	19505751	rs2856608	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	19508573	rs2187659	A	G	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	19508583	rs2187660	C	G	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=2.322;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	19509333	rs2245086	C	T	7878.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr16	19547747	rs226891	C	G	11758.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr16	19548152	rs179050	T	C	6045.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:297,282:0.49:579
chr16	19553183	rs17325092	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,57:0.53:108
chr16	19576013	rs226880	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr16	19580490	rs62026186	T	C	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:111,120:0.52:231
chr16	19580699	rs121235	A	G	5120.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:214,222:0.51:436
chr16	19584332	rs371889	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr16	19589722	rs77656542	G	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.244;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:30,30:0.50:60
chr16	19593030	rs739640	T	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:105,107:0.50:212
chr16	19598562	rs111461972	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr16	19710702	rs9935063	A	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr16	19716505	rs739565	A	G	5239.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:233,250:0.52:483
chr16	19721731	rs720175	A	G	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr16	19721755	rs720174	C	T	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=1.716;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:67,72:0.52:139
chr16	19721806	rs720173	C	T	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=1.214;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:45,51:0.53:96
chr16	19799962	rs4782283	T	A	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	19800133	rs6497404	G	A	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,57:0.52:109
chr16	19800213	rs7191155	T	C	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=0.678;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:50,82:0.62:132
chr16	19868687	rs2729	G	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	19871982	rs11865578	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:102,116:0.53:218
chr16	19883082	rs172907	A	G	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr16	19883364	rs61742688	G	A	4828.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:197,217:0.52:414
chr16	19884285	rs2240047	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	20322425	rs11647569	T	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	20322439	rs11642182	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	20328685	rs1129818	T	C	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	20334679	rs4411505	C	T	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	20334807	rs368914613	AC	A	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=5.402;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=2.93;ReadPosRankSum=2.097;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:85,32:0.27:117
chr16	20334932	rs4393582	G	A	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	20335325	rs12930599	G	A	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:303,220:0.42:523
chr16	20339131	rs4643330	T	C	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	20352313	rs60764202	CA	C	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.059;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=6.17;ReadPosRankSum=1.806;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr16	20355651	rs8054296	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr16	20360101	rs7193058	G	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:122,77:0.39:199
chr16	20370810	rs9652588	C	T	19584.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr16	20370816	rs9652589	C	T	18996.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr16	20370981	rs9929710	A	C	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	20376734	rs8052918	A	G	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	20376755	rs8054266	T	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr16	20386115	rs4522429	T	C	10583.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr16	20422709	rs9927595	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr16	20423033	rs111864451	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr16	20430674	rs112760108	T	C	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:134,73:0.35:207
chr16	20432605	rs59025904	A	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:81,63:0.44:144
chr16	20432732	rs113494620	G	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr16	20435262	rs12103211	T	G	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.750;QD=7.00;ReadPosRankSum=-1.769;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:152,99:0.39:251
chr16	20439070	rs12921615	A	G	3399.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:214,172:0.45:386
chr16	20439199	rs11859961	G	A	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:224,132:0.37:356
chr16	20440953	rs12931611	A	G	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-5.081;QD=8.62;ReadPosRankSum=0.607;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr16	20441020	rs12932087	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr16	20441053	rs8062344	C	G	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=4.369;QD=16.56;ReadPosRankSum=2.779;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:18,56:0.76:74
chr16	20441084	rs8063682	T	C	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	20441215	rs8062563	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr16	20441233	rs113850482	G	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr16	20442510	rs35468793	C	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:97,61:0.39:158
chr16	20442653	rs34985819	G	A	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:110,62:0.36:172
chr16	20448330	rs11646020	A	G	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	20448351	rs71384450	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:90,63:0.41:153
chr16	20448520	rs7499667	T	C	12036.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=43.61;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	20448527	rs7499668	T	C	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.85;QD=44.46;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	20451054	rs199540360	C	G	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.37;QD=27.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	20451067	rs201039688	GA	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.93;MQRankSum=-1.876;QD=5.59;ReadPosRankSum=0.494;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr16	20451086	rs112873171	G	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.812;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=-2.762;QD=18.34;ReadPosRankSum=-0.230;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr16	20471364	rs6497489	T	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	20476852	rs7187246	T	C	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:7,145:0.95:152
chr16	20477163	rs7186805	G	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.19;QD=43.27;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	20477163	.	GTA	CTC	2039	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=51.17;NF=5;NR=34;PP=2039;QD=53.6530224324;SC=ATGCTGTCCTGTATCATATGA;SbPval=0.69;Source=Platypus;TC=40;TCF=6;TCR=34;TR=39;WE=20477173;WS=20477153;set=Platypus	GT:AD:AF:DP	1/1:1,39:0.97:40
chr16	20477165	rs7186307	A	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.81;QD=45.55;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	20480818	rs28615302	T	C	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	20482368	rs1827711	A	G	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	20482623	rs2271060	G	T	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	20482790	rs2271062	C	A	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:60,54:0.47:114
chr16	20486913	rs1634305	G	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:77,43:0.36:120
chr16	20487125	rs1629314	T	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	20488696	rs1700805	A	G	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.16;QD=31.26;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	20488795	rs144948273	G	A	2982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=49.46;MQRankSum=-2.087;QD=15.06;ReadPosRankSum=-0.136;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:73,125:0.63:198
chr16	20489868	rs1634309	A	C	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:149,121:0.45:270
chr16	20490068	rs1634310	A	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr16	20492000	rs146233716	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.57;QD=33.70;SOR=2.770;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	20492304	rs1700809	A	T	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.76;QD=42.69;SOR=3.516;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	20492307	rs1700810	G	A	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.86;QD=46.90;SOR=4.228;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	20492316	rs1617049	C	T	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.74;QD=45.07;SOR=3.981;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	20494408	rs1133607	C	T	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:163,104:0.39:267
chr16	20498079	rs2072080	T	G	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:75,60:0.44:135
chr16	20551855	rs28750179	A	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	20552075	rs16970280	G	T	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	20554613	rs62035054	G	A	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:190,103:0.35:293
chr16	20557688	rs12927522	T	C	1713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.814;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=49.55;MQRankSum=-0.908;QD=8.61;ReadPosRankSum=1.116;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:119,80:0.40:199
chr16	20565020	rs113333491	A	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr16	20565396	rs6497500	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr16	20565585	rs6497501	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr16	20570466	rs28712600	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr16	20570661	rs62035059	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.39;QD=30.29;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	20576048	rs112352583	C	A	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:210,104:0.33:314
chr16	20576267	rs12920996	T	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr16	20599347	rs117305368	A	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:63,19:0.23:82
chr16	20599444	rs201279014	C	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.370;MLEAC=1;MLEAF=0.500;MQ=50.28;MQRankSum=-3.744;QD=3.05;ReadPosRankSum=3.733;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr16	20599486	rs11643396	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.204;MLEAC=1;MLEAF=0.500;MQ=50.99;MQRankSum=0.330;QD=2.16;ReadPosRankSum=1.039;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr16	20599507	rs141896208	C	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr16	20599530	rs11648828	T	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.426;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.351;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=1.278;QD=3.74;ReadPosRankSum=1.039;SOR=0.037;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr16	20602082	rs7498598	T	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:100,97:0.49:197
chr16	20602163	rs28669334	A	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:95,72:0.43:167
chr16	20602287	rs28736286	A	G	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr16	20605328	rs11074464	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-1.003;QD=3.68;ReadPosRankSum=1.776;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr16	20634775	rs3087812	T	C	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:191,92:0.33:283
chr16	20638359	rs145110962	T	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr16	20638576	rs1692729	A	T	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:147,147:0.50:294
chr16	20647921	rs62033279	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr16	20648572	.	G	GATAAAAA,GATAAA	2977.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=183;set=Intersection	GT:AF:DP	0/1:0.43:176
chr16	20648574	rs2355930	G	A	3020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=1.711;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:104,78:0.43:182
chr16	20648580	rs201196954	AGG	A	2930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.42;ReadPosRankSum=1.123;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:109,81:0.43:190
chr16	20648702	rs151328	G	A	3448.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:230,178:0.44:408
chr16	20749461	rs9788809	T	C	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=0.743;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr16	20750498	rs34908456	AT	A	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.560;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-1.468;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr16	20753123	rs234271	T	C	5757.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:156,262:0.63:418
chr16	20792188	rs5715	T	C	5772.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:155,248:0.62:403
chr16	20796508	rs8058758	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr16	20810067	rs3213646	T	C	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:84,91:0.52:175
chr16	20810730	rs7198770	A	G	5122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=0.560;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:131,225:0.63:356
chr16	20811681	rs2301771	C	T	9053.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:289,417:0.59:706
chr16	20824666	.	CTT	C	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=9.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=1.560;SOR=2.437;set=HC	GT:AD:AF:DP	0/1:52,34:0.40:86
chr16	20824697	rs34169933	A	AG	1458.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr16	20827647	rs5816137	AT	A	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=5.073;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.266;QD=6.67;ReadPosRankSum=0.236;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:43,43:0.50:86
chr16	20855309	rs9929443	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr16	20860897	rs6654	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr16	20873767	rs7187522	T	G	6274.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:173,274:0.61:447
chr16	20956098	.	GAC	G	144.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr16	20963832	rs147732992	C	T	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,77:0.64:120
chr16	20976787	rs55780603	T	C	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr16	21030897	rs3095922	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	21030965	rs148237228	G	A	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:77,119:0.61:196
chr16	21033281	.	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	0/1:102,65:0.39:167
chr16	21078693	rs861424	T	G	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:126,88:0.41:214
chr16	21116051	rs11074481	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=10.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-0.639;SOR=0.103;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr16	21132298	rs13330317	T	C	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:106,90:0.46:196
chr16	21136477	rs7191215	A	G	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	21145648	rs11074483	C	T	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-0.645;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:158,107:0.40:265
chr16	21147885	rs3743698	T	C	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:155,95:0.38:250
chr16	21147999	rs730260	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr16	21151913	rs72780891	G	T	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:143,97:0.40:240
chr16	21161559	rs57863199	T	TA	867.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.955;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:73,63:0.46:136
chr16	21185495	.	TA	T	1466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.989;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.669;QD=16.30;ReadPosRankSum=0.972;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:31,59:0.66:90
chr16	21190853	rs1063087	A	C	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:141,99:0.41:240
chr16	21222672	rs2075520	C	A	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:99,72:0.42:171
chr16	21272591	rs14122	G	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	21272768	rs34784464	T	TA	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.111;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr16	21273286	rs226048	A	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr16	21279144	rs78459225	G	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.027;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:64,26:0.29:90
chr16	21286699	rs2733911	C	T	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:37,60:0.62:97
chr16	21286927	rs226045	A	G	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:61,87:0.59:148
chr16	21289023	rs2075628	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr16	21289626	rs3848259	C	G	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:110,136:0.55:246
chr16	21396859	rs368310563	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=5.109;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=-7.333;QD=0.25;ReadPosRankSum=-0.604;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:134,30:0.18:164
chr16	21397273	rs369341030	CTG	C	1019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=-7.391;QD=11.59;ReadPosRankSum=0.381;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:41,47:0.53:88
chr16	21531111	rs7197243	T	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:106,77:0.42:183
chr16	21531326	rs201115196	G	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,58:0.52:111
chr16	21531494	rs42138	T	C	11051.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;MQ=59.38;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr16	21531609	rs42139	C	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:132,62:0.32:194
chr16	21531681	rs42140	C	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr16	21531683	.	C	T	670.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr16	21558652	rs112723067	C	T	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.302;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.809;QD=1.94;ReadPosRankSum=0.362;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:202,43:0.18:245
chr16	21608472	rs194548	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr16	21623944	.	C	CT	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.109;QD=3.89;ReadPosRankSum=-0.534;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:56,42:0.43:98
chr16	21652720	rs1055740	A	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	21658266	rs3091404	C	T	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	21689790	rs201586930	T	TA	78.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.089;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr16	21689791	rs215894	T	A	1008.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=34.79;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	21696086	rs10597623	ATTT	A	511.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	21728261	rs150415498	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr16	21730449	rs215901	C	T	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	21732553	rs35961471	TAC	T	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=7.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-0.734;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr16	21763602	.	ATG	A	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-1.591;QD=4.06;ReadPosRankSum=1.885;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr16	21814068	rs58942468	A	G	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=5.126;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-7.806;QD=2.77;ReadPosRankSum=-0.035;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:110,35:0.24:145
chr16	21821976	rs148768203	C	CA	550.19	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:5,31:0.86:36
chr16	21970546	rs2967178	T	C	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	21991811	.	G	GA	21	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.4999;HP=11;HapScore=2;MGOF=6;MMLQ=19;MQ=60.0;NF=2;NR=1;PP=21;QD=11.0;SC=CCACCACTCAGAAAAAAAAAA;SbPval=0.45;Source=Platypus;TC=11;TCF=9;TCR=2;TR=3;WE=21991819;WS=21991801;set=Platypus	GT:AD:AF:DP	1/0:8,3:0.27:11
chr16	21992122	rs2965803	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	21994411	rs7282	G	A	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:111,123:0.53:234
chr16	22012146	rs143239876	AATGATG	AATG,A	1483.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=48;set=Intersection	GT:AF:DP	1/1:1.00:40
chr16	22114756	rs139030402	C	T	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:112,127:0.53:239
chr16	22128052	rs11649656	TT	GC	11803.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	22144318	rs1105929	C	T	6123.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:231,296:0.56:527
chr16	22144578	rs1105928	A	C	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr16	22149612	rs112136401	C	CTG	567.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr16	22152450	rs11862108	A	G	1571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=2.450;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:59,80:0.58:139
chr16	22161136	rs1991020	T	C	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	22178256	rs6497575	G	A	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:89,131:0.60:220
chr16	22178486	.	ATTTTTTTTTTTTTTTTT	A	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=10.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.09;ReadPosRankSum=1.106;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr16	22178509	.	T	G	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=8.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.60;ReadPosRankSum=2.047;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:4,24:0.86:28
chr16	22192784	rs55969568	G	A	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:124,151:0.55:275
chr16	22198157	rs146454107	T	TCCCTCCCTTCCTACCTCTCCCCAC	1327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=20.585;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.971;QD=21.08;ReadPosRankSum=1.398;SOR=4.518;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr16	22260293	.	AT	A	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.071;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr16	22261900	rs2303187	G	A	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,78:0.49:159
chr16	22262514	rs2303186	C	A	4109.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:102,177:0.63:279
chr16	22262737	.	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.258;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr16	22268526	rs11640501	A	C	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:48,83:0.63:131
chr16	22269867	rs4783453	A	G	6782.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	22271671	rs35233038	TA	T	630.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.595;QD=11.68;ReadPosRankSum=-1.239;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:11,43:0.80:54
chr16	22277965	rs1559316	T	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr16	22291442	rs35443873	C	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:63,77:0.55:140
chr16	22328094	rs2290830	G	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr16	22334035	rs8055191	A	G	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr16	22334084	rs8055349	A	G	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,78:0.57:136
chr16	22334337	rs112922359	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr16	22339756	rs112693034	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,71:0.54:132
chr16	22376218	rs118111122	A	T	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:197,224:0.53:421
chr16	22448149	.	A	AAAG	734.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=1.709;QD=8.54;ReadPosRankSum=0.214;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:48,38:0.44:86
chr16	22579730	rs376957934	A	ATG	462.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-0.054;QD=7.71;ReadPosRankSum=0.270;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr16	22587868	rs4783422	G	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=13.426;MLEAC=1;MLEAF=0.500;MQ=49.59;MQRankSum=-5.217;QD=0.77;ReadPosRankSum=1.455;SOR=2.811;set=HC	GT:AD:AF:DP	0/1:75,10:0.12:85
chr16	22826339	rs208951	A	G	11013.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr16	23079501	rs35254998	G	A	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	23097108	rs375351992	GT	G	1730.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	23221183	rs5740	A	G	11738.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr16	23221238	rs4281710	A	G	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	23224573	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.487;QD=1.94;ReadPosRankSum=-1.250;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr16	23379377	rs3214467	A	AG	609.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr16	23382967	rs13306634	C	T	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr16	23382982	rs3214466	CT	C	1973.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:50,78:0.61:128
chr16	23383247	rs2303157	G	A	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:89,100:0.53:189
chr16	23388415	rs250570	G	C	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:55,74:0.57:129
chr16	23400494	rs250586	C	A	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	23457290	rs71379679	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.582;QD=2.23;ReadPosRankSum=0.259;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr16	23486197	rs11074559	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.95;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	23486474	.	A	AAC	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-2.017;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr16	23486510	.	CTTT	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.501;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr16	23489711	rs1135045	C	G	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	23490353	rs4968008	T	G	9606.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr16	23498305	rs35896041	G	GTTT	353.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;MQRankSum=0.603;QD=29.48;ReadPosRankSum=0.903;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr16	23506940	rs722069	G	A	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	23521643	rs1071685	G	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	23521750	rs2285522	T	C	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	23521780	rs2285521	C	T	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	23533008	rs11074565	G	A	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	23533111	rs62031460	C	T	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:103,96:0.48:199
chr16	23535680	rs1468138	A	C	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	23536366	rs6497670	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	23536531	rs75133940	C	T	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:77,93:0.55:170
chr16	23536684	rs6497671	T	C	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	23540798	rs2072062	C	T	7147.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr16	23541223	rs2072061	G	A	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	23546561	rs2073951	G	C	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	23555726	rs2369009	C	T	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	23557718	rs7196534	T	C	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	23557790	rs4968019	T	C	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	23563501	rs7187920	C	T	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	23606895	rs240744	G	T	6237.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.54;ReadPosRankSum=1.492;SOR=0.292;set=HC	GT:AD:AF:DP	1/1:1,234:1.00:235
chr16	23615042	.	T	TA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=2.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.188;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:70,16:0.19:86
chr16	23625463	rs249936	A	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	23634521	rs35378559	CTT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.481;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr16	23718262	rs16972843	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:69,59:0.46:128
chr16	23721601	rs4967959	T	G	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:106,90:0.46:196
chr16	23722042	rs3899652	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:63,32:0.34:95
chr16	23724753	rs3809682	G	A	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr16	23768380	rs5816221	T	TG	1448.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	23768710	rs109592	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr16	23768802	rs80950	T	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	23848762	rs3729883	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr16	23848861	rs3729885	T	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr16	24000061	rs3729889	T	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr16	24043676	rs1971276	C	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr16	24104328	rs880824	A	G	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	24105669	rs7196765	G	A	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	24185815	rs72154122	CT	C	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=11.637;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.988;QD=3.75;ReadPosRankSum=-1.852;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:114,75:0.40:189
chr16	24202615	rs198145	A	G	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:135,94:0.41:229
chr16	24357998	rs5816249	T	TG	2192.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr16	24574691	rs66509757	CT	C	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=4.090;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.862;QD=2.40;ReadPosRankSum=0.436;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:90,46:0.34:136
chr16	24583712	rs148143334	TAAAGAG	T	767.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,23:0.37:63
chr16	24676090	rs149786252	T	TCA	139.75	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr16	24682396	rs75849092	G	T	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:182,101:0.36:283
chr16	24741005	.	TCGG	T	1347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=5.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-0.899;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr16	24741686	rs7202252	T	C	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.257;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:75,77:0.51:152
chr16	24762182	rs34485608	T	TA	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr16	24769570	rs138667551	TTA	T	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr16	24807165	rs1030211	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	24816492	rs2059134	A	G	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:333,212:0.39:545
chr16	24820823	rs56154395	CA	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.844;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:37,23:0.38:60
chr16	24828360	rs72770424	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr16	24873908	rs140369052	T	TC	915.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.151;QD=11.74;ReadPosRankSum=-0.576;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:23,55:0.71:78
chr16	24881152	rs11866271	A	C	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.80;SOR=2.790;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	24886886	rs60449337	TG	T,TGG	1488.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.22;SOR=1.981;set=HC	GT:AD:AF:DP	1/2:0,29,11:0.72,0.28:40
chr16	24886893	rs34534629	G	T	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.28;ReadPosRankSum=1.090;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr16	24888593	rs8052587	A	G	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:134,193:0.59:327
chr16	24888646	rs11074656	T	C	2564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.482;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:157,122:0.44:279
chr16	24895361	rs72770465	C	T	6883.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:237,315:0.57:552
chr16	24902194	rs274081	T	C	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr16	24918048	rs17772929	C	T	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:468,266:0.36:734
chr16	24919245	rs113206122	C	CAGGGA	756.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr16	24921854	rs201159355	A	ATT	1068.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.560;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:67,63:0.48:130
chr16	24975425	rs12599343	G	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr16	24980189	rs12103073	G	A	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:69,110:0.61:179
chr16	24990136	rs58340349	G	GA	168.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr16	24990187	rs56027541	TA	T	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=1.541;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr16	25043277	rs11074669	G	A	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:303,222:0.42:525
chr16	25043569	rs7498149	A	G	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:71,85:0.54:156
chr16	25066321	rs67051289	A	AG	373.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.92;QD=31.14;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	25066332	rs12924642	A	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.69;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	25137289	rs7189229	G	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	25137385	rs11861481	G	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:101,36:0.26:137
chr16	25137449	rs7188975	A	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:112,53:0.32:165
chr16	25151398	rs10681142	A	ACT	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr16	25163017	rs139504024	G	GGTGTGT,GGTGTGTGT	2952.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.000;QD=41.01;ReadPosRankSum=1.556;SOR=2.030;set=HC	GT:AD:AF:DP	1/2:2,13,57:0.18,0.79:72
chr16	25172274	rs277899	G	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr16	25172307	rs111379361	A	AT	547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=0.074;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:14,39:0.74:53
chr16	25180610	rs6497812	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	25239569	rs59534960	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr16	25239805	rs2287798	G	C	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	25239872	rs2287797	G	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr16	25255080	rs141745999	T	TAAAACTCCTTGGTTTTGCACC	3484.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:102,75:0.42:177
chr16	25255242	rs8059494	T	A	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:202,134:0.40:336
chr16	25255506	rs11642611	C	T	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:80,138:0.63:218
chr16	25258035	rs11649280	A	G	3934.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:173,181:0.51:354
chr16	25258655	rs61742723	A	G	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:143,159:0.53:302
chr16	25258780	rs36001886	T	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr16	25263278	rs2112811	G	A	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr16	25264196	rs4787702	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr16	25264440	rs11643089	T	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr16	25268368	rs4787310	A	G	11091.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr16	25704145	rs2943336	A	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	25944700	rs4303490	A	G	6963.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	27215380	rs908382	A	C	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	27222442	.	CT	C	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.222;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:72,44:0.38:116
chr16	27230261	rs75521851	T	C	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:57,95:0.62:152
chr16	27231740	rs34577370	G	C	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	27253059	rs28363677	G	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	27356203	rs1805010	A	G	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.655;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:117,81:0.41:198
chr16	27356359	rs2074572	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr16	27356398	rs2072130	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr16	27356667	rs3024560	T	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:136,59:0.30:195
chr16	27364158	rs3024610	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr16	27367334	rs4787423	C	T	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	27367405	rs36125482	CT	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=0.263;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr16	27367414	rs145435809	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.391;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	27370932	rs138640688	AGTG	A	1567.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	27371158	rs3024660	C	T	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	27414339	rs12934152	T	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr16	27414378	rs6498021	T	G	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:112,101:0.47:213
chr16	27441283	rs179760	A	G	6123.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	27456613	rs963154	G	C	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:55,66:0.55:121
chr16	27457158	rs3093375	T	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr16	27457518	rs3093377	C	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr16	27472772	rs2228248	C	T	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:110,142:0.56:252
chr16	27473860	rs12932325	G	A	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:39,81:0.68:120
chr16	27474910	rs12919017	A	G	4440.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:173,211:0.55:384
chr16	27476548	rs12925626	G	A	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:91,100:0.52:191
chr16	27483256	rs12933827	G	A	3765.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:106,164:0.61:270
chr16	27494675	rs232062	C	T	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:60,83:0.58:143
chr16	27501189	rs232067	C	T	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr16	27506825	rs232071	G	A	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:47,61:0.56:108
chr16	27510117	rs11452553	C	CA	4283.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	27512760	rs232072	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr16	27561584	rs4787969	G	A	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=1.119;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:139,67:0.33:206
chr16	27585442	.	GTCACTTGTAATAA	G	156.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr16	27629661	rs4787980	G	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr16	27642249	rs233453	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr16	27666204	rs233470	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr16	27692835	rs12923861	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:67,82:0.55:149
chr16	27709825	rs12920169	C	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr16	27713103	rs9923148	C	T	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=-3.082;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,48:0.63:76
chr16	27715377	rs34773854	AT	A	1302.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr16	27720201	rs12930355	C	T	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:28,79:0.74:107
chr16	27752135	rs12447120	C	T	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:81,123:0.60:204
chr16	27752314	rs5816442	T	TC	456.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	27761040	rs61734902	C	T	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:120,65:0.35:185
chr16	27772901	rs4787984	G	A	8710.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr16	27777831	rs8043555	A	G	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	27786145	rs8053976	G	A	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:90,121:0.57:211
chr16	27802805	rs1644600	C	T	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:187,116:0.38:303
chr16	27856156	rs772960	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.418;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr16	27861762	rs9923711	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr16	27861785	rs9923715	C	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=1.432;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr16	27861969	rs72782161	A	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-1.528;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr16	27974418	rs2051742	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr16	27974487	rs2051743	T	C	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr16	28074322	rs71377621	C	T	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:97,78:0.45:175
chr16	28143489	rs9930464	C	T	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	28157351	rs28379290	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	28167914	rs10445001	C	A	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	28167928	rs72789669	T	A	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=2.256;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:24,44:0.65:68
chr16	28181306	rs28479048	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	28328916	rs113394773	C	T	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:108,161:0.60:269
chr16	28498670	.	G	A	893.77	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:79,42:0.35:121
chr16	28508716	rs40832	T	C	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	28603393	rs27742	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	28617485	rs1801030	C	T	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	28618238	rs7499134	A	G	19008.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:1,700:1.00:701
chr16	28618708	rs11648192	C	T	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	28620800	rs3760091	C	G	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:139,123:0.47:262
chr16	28631314	rs141320733	T	TTGTGTG,TTGTG	1167.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=34;set=Intersection	GT:AF:DP	1/1:1.00:28
chr16	28631360	rs28410083	A	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	28835900	rs12920514	G	A	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:77,91:0.54:168
chr16	28838073	rs12448482	A	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr16	28842311	rs4344749	A	G	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	28844068	rs7498491	T	A	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.416;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=0.728;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chr16	28845584	rs35725751	C	T	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:226,178:0.44:404
chr16	28856819	rs8061877	C	T	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.391;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:164,68:0.29:232
chr16	28883327	rs28433345	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr16	28903656	rs6565261	C	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr16	28903763	rs200957871	CTG	C	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=1.073;SOR=2.453;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr16	28903764	.	TGTAA	T	1325	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=0;NR=18;PP=1325;QD=76.0;SC=TGAGAAAGGCTGTAACCTTGG;SbPval=1.0;Source=Platypus;TC=24;TCF=0;TCR=24;TR=18;WE=28903777;WS=28903754;set=Platypus	GT:AD:AF:DP	1/0:6,18:0.75:24
chr16	28903767	rs200961662	AAC	A	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=0.996;SOR=2.453;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr16	28903769	.	C	A	1326	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=1;NR=17;PP=1326;QD=75.5984006971;SC=AAGGCTGTAACCTTGGCTCCT;SbPval=0.93;Source=Platypus;TC=28;TCF=4;TCR=24;TR=18;WE=28903777;WS=28903754;set=Platypus	GT:AD:AF:DP	1/0:10,18:0.64:28
chr16	28906084	rs9931989	G	C	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	28913787	rs7189927	T	C	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	28914026	rs41292394	G	A	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:213,144:0.40:357
chr16	28915433	rs2071342	A	C	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:93,126:0.58:219
chr16	28915527	rs10499	G	A	15101.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr16	28922149	rs11646653	C	T	10810.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr16	28925978	rs3924376	T	C	10687.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr16	28944396	rs2904880	C	G	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	28944700	rs35979293	G	T	4424.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:143,200:0.58:343
chr16	28962755	rs12449272	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr16	28993049	rs6565300	A	C	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	28993649	rs11301233	AC	A	6615.73	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:188,270:0.59:458
chr16	28995757	rs7140	C	A	4876.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.443;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.02;ReadPosRankSum=-0.106;SOR=0.322;set=HC	GT:AD:AF:DP	1/1:4,199:0.98:203
chr16	28997997	rs1131543	G	A	3968.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:273,206:0.43:479
chr16	29001460	rs9929088	A	C	13740.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr16	29088128	rs67548829	TACAACTATTGCTGTTATACTAAAGACCAATAGAAATAGCAAGATTAATTAAGATACCAGTTGAAA	T	1910.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.367;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=14.555;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=1.401;QD=5.86;ReadPosRankSum=-5.451;SOR=1.485;set=HC	GT:AD:AF:DP	0/1:258,68:0.21:326
chr16	29088221	rs2442141	A	G	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.500;MQ=52.09;MQRankSum=-5.368;QD=5.36;ReadPosRankSum=0.526;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:56,22:0.28:78
chr16	29102189	rs56374327	C	CT	2000.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.18;QD=25.98;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	29113263	rs149472124	C	T	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:91,51:0.36:142
chr16	29113497	rs11366120	AT	A	2432.73	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:204,160:0.44:364
chr16	29127350	rs1540389	T	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr16	29142059	rs1642020	G	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr16	29142189	rs1642021	A	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr16	29142204	rs1642022	A	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr16	29150636	rs34323521	A	AC	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr16	29150785	rs1646119	G	A	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.288;QD=8.58;ReadPosRankSum=-0.376;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:50,40:0.44:90
chr16	29332380	rs257878	T	C	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr16	29376400	.	CTG	C	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.90;MQRankSum=-4.976;QD=4.78;ReadPosRankSum=-1.438;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:51,24:0.32:75
chr16	29705854	rs9936468	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	29708350	rs9932770	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	29790669	rs235634	T	A	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	29790678	rs183527	T	G	8179.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	29790709	rs12933548	C	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr16	29790767	rs235635	A	G	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	29790864	rs235636	G	A	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	29791561	rs235637	T	G	10471.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:1,390:1.00:391
chr16	29791721	rs235638	G	C	7632.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	29791818	rs35586094	TA	T	1218.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	29809634	rs5816499	TACACAC	TAC,T	1090.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	1/1:1.00:27
chr16	29811319	rs235648	C	T	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	29814234	rs2450399	G	A	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	29817998	rs111993640	C	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	29819437	.	G	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.385;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:77,13:0.14:90
chr16	29821744	rs2516825	G	A	9343.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr16	29822841	rs11150572	A	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr16	29823202	rs12923293	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	29825126	rs11150573	T	C	9764.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr16	29859430	rs11350750	CT	C	660.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:3,40:0.93:43
chr16	29872361	rs3815822	G	A	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr16	29888367	rs139403019	GTC	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.516;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:46,6:0.12:52
chr16	29891490	rs71373211	CT	C	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.176;QD=8.03;ReadPosRankSum=-0.463;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:20,31:0.61:51
chr16	29906546	rs4787484	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=6.188;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.608;QD=5.10;ReadPosRankSum=-0.046;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:65,26:0.29:91
chr16	29907298	rs34549819	G	GT	990.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr16	29908433	rs11649499	C	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr16	29910431	.	GTT	G	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.919;QD=10.49;ReadPosRankSum=1.159;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr16	29910518	rs11344	C	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr16	29918034	rs1129700	T	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr16	29923510	rs4548895	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr16	29934754	rs12596042	T	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.036;QD=4.16;ReadPosRankSum=-0.388;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:77,37:0.32:114
chr16	29937081	rs5816505	G	GA	913.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr16	29982611	rs10624125	A	ATTTTCCC	1131.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr16	29982961	rs9932702	C	T	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=1.605;QD=7.21;ReadPosRankSum=1.786;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr16	29993108	rs11642046	C	G	4197.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:286,214:0.43:500
chr16	29994736	rs3814884	T	A	6689.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:423,306:0.42:729
chr16	29994922	rs3814883	C	T	20133.77	.	AC=1;AF=0.500;AN=2;DB;DP=2636;set=Intersection	GT:AD:AF:DP	0/1:1549,1071:0.41:2620
chr16	29998200	rs4077410	A	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:91,76:0.46:167
chr16	29999488	rs10445105	T	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr16	30000901	rs3814881	G	A	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:92,78:0.46:170
chr16	30016022	rs12928610	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr16	30017895	rs3814880	T	C	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:307,177:0.37:484
chr16	30018500	rs3935873	C	T	5075.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:345,251:0.42:596
chr16	30018720	rs12921753	C	T	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,63:0.47:134
chr16	30021402	rs1140239	C	T	1921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.246;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:96,86:0.47:182
chr16	30037128	rs11544328	A	C	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:233,176:0.43:409
chr16	30081367	rs2071390	G	T	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:93,126:0.58:219
chr16	30093713	rs150994602	T	A	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:32,57:0.64:89
chr16	30093779	rs2278557	C	G	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:134,90:0.40:224
chr16	30096468	rs34627357	T	TG	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr16	30097630	rs2289292	C	T	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr16	30098189	rs3833842	GTGA	G	2945.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,80:0.43:185
chr16	30119525	rs8061772	C	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	30124847	rs61764618	C	T	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:95,55:0.37:150
chr16	30133378	rs139021825	C	T	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:74,71:0.49:145
chr16	30134312	rs36084237	C	G	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:198,177:0.47:375
chr16	30212154	.	A	G	40.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	30366039	rs35480350	G	A	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	30376486	rs8049108	T	C	11553.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr16	30376959	rs11646130	T	C	9614.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr16	30381303	rs12930787	C	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	30410338	.	C	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.330;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:352,52:0.13:404
chr16	30424888	rs11314620	GT	G	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.750;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.548;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr16	30485393	rs11574938	G	C	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:184,99:0.35:283
chr16	30492666	rs57608894	TA	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.977;QD=3.53;ReadPosRankSum=-0.045;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr16	30495412	rs2285459	T	C	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:96,63:0.40:159
chr16	30495657	rs7197010	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr16	30500761	rs3087438	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr16	30505513	rs4350585	A	G	5917.77	.	AC=1;AF=0.500;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	0/1:649,343:0.35:992
chr16	30507972	rs28708641	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr16	30522152	rs3087443	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:136,73:0.35:209
chr16	30528272	rs7196298	C	A	4048.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:114,178:0.61:292
chr16	30536672	rs3751847	A	G	17140.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:1,605:1.00:606
chr16	30536918	rs10871453	C	G	8228.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	30537754	.	AGCGGCG	A	3606.73	.	AC=1;AF=0.500;AN=2;DP=293;set=Intersection	GT:AD:AF:DP	0/1:168,99:0.37:267
chr16	30538259	rs3794703	T	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	30566747	rs17850402	G	A	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:213,142:0.40:355
chr16	30585139	rs142051127	TTAAA	T	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.650;QD=8.41;ReadPosRankSum=0.318;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr16	30718873	rs72793372	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr16	30724070	rs4889500	G	T	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	30724221	rs4889501	C	T	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.86;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	30732406	rs1470129	C	G	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	30734963	rs4889502	C	A	19350.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:1,688:1.00:689
chr16	30735038	rs79597785	C	G	14717.77	.	AC=1;AF=0.500;AN=2;DB;DP=1668;set=Intersection	GT:AD:AF:DP	0/1:950,707:0.43:1657
chr16	30760367	.	GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGC	G,CTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGC	6324.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.14;MQRankSum=-0.639;QD=39.78;ReadPosRankSum=-1.692;SOR=1.226;set=HC	GT:AD:AF:DP	1/2:1,121,37:0.76,0.23:159
chr16	30760370	rs375313391	G	C	417.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.517;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=48.554;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-0.377;QD=2.63;ReadPosRankSum=-4.381;SOR=5.644;set=HC	GT:AD:AF:DP	0/1:123,36:0.23:159
chr16	30760373	rs368306015	G	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.015;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=43.215;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-0.799;QD=2.51;ReadPosRankSum=-4.791;SOR=5.416;set=HC	GT:AD:AF:DP	0/1:123,32:0.21:155
chr16	30760376	.	G	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=35.079;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-1.557;QD=1.88;ReadPosRankSum=-5.263;SOR=5.017;set=HC	GT:AD:AF:DP	0/1:123,26:0.17:149
chr16	30762640	rs4889504	C	T	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr16	30766247	rs9941201	G	A	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	30768492	rs71820772	GCTCTGGC	G	2226.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	30770267	rs7188077	C	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	30770950	rs62622830	T	C	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=-0.431;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:104,65:0.38:169
chr16	30772040	rs4889505	A	G	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	30773822	rs1550477	T	C	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	30779716	rs7195142	A	G	7337.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	30780828	rs4889506	A	G	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	30832463	rs6565205	A	C	13211.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	30832475	rs6565206	T	C	13752.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr16	30832701	rs8045550	A	C	13677.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr16	30833246	rs9319587	C	T	8685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.499;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:294,419:0.59:713
chr16	30833272	rs8046609	A	G	22333.77	.	AC=2;AF=1.00;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	1/1:2,853:1.00:855
chr16	30833425	rs4889510	G	C	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	30886643	rs897984	T	C	7188.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	30938811	rs12930545	A	G	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	30964940	rs9926903	A	G	19094.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr16	30977799	rs11150601	G	A	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	30980902	rs897986	T	C	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	30999142	rs9938550	A	G	10479.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr16	30999462	rs2305880	T	C	7601.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	31004926	rs7194921	C	T	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	31012781	rs12920772	G	A	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.38;QD=22.83;SOR=4.152;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	31072909	rs8046978	G	A	7340.77	.	AC=1;AF=0.500;AN=2;DB;DP=915;set=Intersection	GT:AD:AF:DP	0/1:539,371:0.41:910
chr16	31075175	rs2303223	G	A	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:119,114:0.49:233
chr16	31075708	rs2032917	C	G	16485.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr16	31088347	rs749671	G	A	6141.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:160,261:0.62:421
chr16	31088625	rs749670	A	G	6821.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:229,296:0.56:525
chr16	31097574	rs4889535	G	C	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	31104192	rs144197331	C	CA	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr16	31104509	rs8050894	C	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr16	31104878	rs9934438	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr16	31105554	rs2884737	A	C	13737.77	.	AC=1;AF=0.500;AN=2;DB;DP=1138;set=Intersection	GT:AD:AF:DP	0/1:504,631:0.56:1135
chr16	31121793	rs14235	G	A	3332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-1.317;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:85,156:0.65:241
chr16	31122229	rs1549296	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	31131614	rs4527034	A	G	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:158,129:0.45:287
chr16	31138445	rs72785553	G	A	4493.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:275,219:0.44:494
chr16	31141826	rs1549295	A	G	7775.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr16	31141880	rs1549294	A	G	7962.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr16	31141993	rs1549293	C	T	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:108,149:0.58:257
chr16	31142271	rs17855606	A	G	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.034;QD=10.44;ReadPosRankSum=-2.651;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:52,52:0.50:104
chr16	31142381	rs2855479	A	G	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	31143993	rs45619735	C	T	4529.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:274,203:0.43:477
chr16	31151521	rs8047469	A	G	1373.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr16	31152697	rs150305650	T	TAAAC	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=1.414;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:42,23:0.35:65
chr16	31152717	rs889547	T	C	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.34;SOR=1.732;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	31153105	rs1549300	A	G	10075.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr16	31153780	rs889546	G	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	31154146	rs1549299	G	A	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	31191482	rs929867	A	G	10155.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr16	31193942	rs741810	C	A	3079.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:185,155:0.46:340
chr16	31195279	rs1052352	C	T	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:98,140:0.59:238
chr16	31195759	rs370126678	CT	C	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=9.334;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.263;QD=7.69;ReadPosRankSum=-0.191;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:31,61:0.66:92
chr16	31196141	rs71771375	GTCTTTTTACTT	G	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.577;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr16	31196224	.	G	GT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.177;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:100,24:0.19:124
chr16	31230463	rs7186832	C	T	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:40,57:0.59:97
chr16	31271545	rs11865830	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr16	31273129	rs3764327	T	C	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:108,137:0.56:245
chr16	31284618	rs201225943	T	TA	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.492;QD=3.01;ReadPosRankSum=1.775;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:118,52:0.31:170
chr16	31336719	rs1143682	G	A	6638.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:288,310:0.52:598
chr16	31339625	rs28372932	G	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr16	31340368	rs55742763	G	A	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr16	31342608	rs7188189	T	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	31342788	rs111881239	C	CTTG	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr16	31343181	rs142861575	C	CGTGTGTGCGA	640.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr16	31371193	rs4264407	C	G	9181.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr16	31372290	rs11150617	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr16	31374535	rs2230429	C	G	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:104,178:0.63:282
chr16	31384422	rs146920512	AAAGAAG	A	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.580;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr16	31384554	rs2070896	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr16	31392189	rs11150620	G	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr16	31404467	rs8050328	T	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr16	31404571	rs8050500	T	C	9681.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr16	31405463	rs112895789	A	G	650.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=6.732;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.833;QD=10.50;ReadPosRankSum=3.683;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr16	31422429	rs12444660	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	31427352	rs144776519	ATCTTG	A	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr16	31427678	rs8056122	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr16	31435366	rs116943658	GA	AG	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;JOINED;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr16	31435918	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.067;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr16	31439239	.	G	GCCC	322.75	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	31439243	.	GACC	G	322.75	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	31439248	.	C	G	286.80	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	31439253	.	C	G	241.84	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	31439256	.	CA	C	187.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.97;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	31470540	rs3813002	T	C	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	31471378	rs9926717	A	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:106,70:0.40:176
chr16	31473751	.	C	T	4054.77	.	AC=1;AF=0.500;AN=2;DP=314;set=Intersection	GT:AD:AF:DP	0/1:129,182:0.59:311
chr16	31476458	rs11150624	C	T	3860.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:143,172:0.55:315
chr16	31483622	rs11646911	C	T	8029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=1.193;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:335,395:0.54:730
chr16	31488916	rs10596	C	G	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:121,181:0.60:302
chr16	31495996	.	C	A	411.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr16	31503751	rs4536493	A	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	31519048	rs11861164	A	G	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	31539386	rs8050390	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr16	31575186	rs7192364	C	T	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	31575211	rs111880416	A	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:96,38:0.28:134
chr16	31580272	rs4889673	C	T	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	31580530	rs4889548	A	C	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	31613625	rs34368131	GT	G	15033.73	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr16	31724836	rs2884713	T	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	31734197	rs34186495	G	GA	2491.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:4,109:0.96:113
chr16	31770696	rs34487972	G	GA	3227.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	31770723	rs12921028	T	A	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	31926619	rs3850114	G	A	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	32890081	.	C	T	38.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.01;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	32891003	rs149883562	T	C	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:260,119:0.31:379
chr16	32893880	rs149083075	G	A	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	32936906	.	G	A	128.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.43;QD=25.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	33390298	.	G	A	1057.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr16	33391415	rs357994	A	C	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-1.207;QD=13.04;ReadPosRankSum=0.224;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:46,69:0.60:115
chr16	33410561	rs2632816	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr16	33410777	rs74905055	G	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.225;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=4.182;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-13.799;QD=0.59;ReadPosRankSum=2.610;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:264,38:0.13:302
chr16	33424634	rs60026982	T	C	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.807;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-3.177;QD=18.18;ReadPosRankSum=-0.359;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr16	33424637	rs62033013	AA	GG	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.101;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.543;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-2.952;QD=17.77;ReadPosRankSum=-1.296;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:23,21:0.48:44
chr16	33424691	rs2632824	T	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr16	33424761	.	A	C	2080.77	.	AC=1;AF=0.500;AN=2;DP=230;set=Intersection	GT:AD:AF:DP	0/1:128,101:0.44:229
chr16	33424787	rs2632823	C	T	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:158,132:0.46:290
chr16	33424917	rs1906318	A	C	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:209,172:0.45:381
chr16	33424950	rs2927971	C	T	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:195,135:0.41:330
chr16	33530772	.	T	C	140	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=4;MGOF=16;MMLQ=28;MQ=54.33;NF=2;NR=1;PP=140;QD=58.2570708491;SC=CAGAAAATGTTATATTTACTA;SbPval=0.33;Source=Platypus;TC=13;TCF=5;TCR=8;TR=3;WE=33530791;WS=33530762;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr16	33530783	.	C	CTTAA	147	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=4;MGOF=16;MMLQ=28;MQ=54.37;NF=1;NR=1;PP=147;QD=87.5;SC=ATATTTACTACTCAGTCAGTA;SbPval=0.39;Source=Platypus;TC=9;TCF=2;TCR=7;TR=2;WE=33530791;WS=33530762;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr16	33530831	.	G	A	38	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=28;MQ=53.26;NF=2;NR=4;PP=38;QD=12.1285354245;SC=AATTCATAAGGTCTATACTGG;SbPval=0.68;Source=Platypus;TC=17;TCF=6;TCR=11;TR=6;WE=33530839;WS=33530821;set=Platypus	GT:AD:AF:DP	1/0:11,6:0.35:17
chr16	33534128	rs4247491	G	C	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:57,31:0.35:88
chr16	33534161	rs4247492	T	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:91,31:0.25:122
chr16	33534194	rs112954068	C	CA	1424.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:112,43:0.28:155
chr16	33534198	rs146867572	C	A	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.671;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=11.197;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-12.107;QD=9.13;ReadPosRankSum=-2.772;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:114,43:0.27:157
chr16	33534205	rs75274563	T	C	1727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.898;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=12.473;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-12.239;QD=10.73;ReadPosRankSum=-2.569;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:114,47:0.29:161
chr16	33534209	rs111304289	T	A	1761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.800;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=12.471;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-12.144;QD=11.08;ReadPosRankSum=-2.296;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:111,48:0.30:159
chr16	33534212	rs74015084	C	T	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=11.846;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-11.695;QD=10.98;ReadPosRankSum=-2.697;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:108,53:0.33:161
chr16	33534254	rs79370116	C	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-7.075;QD=0.38;ReadPosRankSum=2.598;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:123,21:0.15:144
chr16	33534278	rs10445205	A	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr16	33534325	rs375310866	CT	C	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr16	33534330	rs28594967	G	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr16	33534334	rs372825979	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=53.36;MQRankSum=-2.057;QD=5.37;ReadPosRankSum=-0.139;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr16	33534339	.	A	ACTT	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=52.99;MQRankSum=-2.038;QD=2.79;ReadPosRankSum=0.343;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:57,10:0.15:67
chr16	33534343	.	TGGG	T	189.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=-1.910;QD=2.92;ReadPosRankSum=0.396;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:56,9:0.14:65
chr16	33534344	rs78083012	G	T	921.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.160;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.720;MLEAC=1;MLEAF=0.500;MQ=52.95;MQRankSum=-4.624;QD=15.36;ReadPosRankSum=-1.404;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr16	33534346	rs375719784	G	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.073;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=52.83;MQRankSum=-4.541;QD=14.35;ReadPosRankSum=-1.799;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:35,24:0.41:59
chr16	33534352	rs78884180	G	C	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.256;MLEAC=1;MLEAF=0.500;MQ=52.64;MQRankSum=-6.098;QD=21.26;ReadPosRankSum=-1.561;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:27,33:0.55:60
chr16	33534354	rs74594913	C	T	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-5.999;QD=22.00;ReadPosRankSum=-1.256;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:27,31:0.53:58
chr16	33534369	rs74800708	C	CAA	798.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr16	33539512	rs78972024	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr16	33539541	rs80334711	A	C	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=7.241;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=-7.563;QD=6.93;ReadPosRankSum=1.375;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:57,34:0.37:91
chr16	33539588	rs79792636	T	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=14.844;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-8.846;QD=2.51;ReadPosRankSum=1.588;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:109,28:0.20:137
chr16	33539634	rs76750868	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:108,16:0.13:124
chr16	33539648	rs56161129	C	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.004;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=27.999;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-7.332;QD=1.37;ReadPosRankSum=-0.500;SOR=4.718;set=HC	GT:AD:AF:DP	0/1:103,12:0.10:115
chr16	33961008	rs375442662	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.678;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=11.867;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-3.767;QD=6.51;ReadPosRankSum=2.223;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr16	33961010	rs143832052	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.569;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=12.643;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-3.885;QD=6.12;ReadPosRankSum=2.366;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr16	33961019	.	G	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=10.294;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-4.110;QD=5.37;ReadPosRankSum=1.153;SOR=0.071;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr16	33961030	rs77469183	T	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=11.554;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-4.323;QD=4.67;ReadPosRankSum=0.000;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr16	33961041	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=15.566;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-4.578;QD=1.21;ReadPosRankSum=-1.725;SOR=1.399;set=HC	GT:AD:AF:DP	0/1:42,4:0.09:46
chr16	33961317	rs75989665	G	A	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=66.481;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-4.386;QD=5.90;ReadPosRankSum=0.865;SOR=4.888;set=HC	GT:AD:AF:DP	0/1:90,23:0.20:113
chr16	33961327	rs79375500	G	T	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.352;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=68.815;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-4.966;QD=6.66;ReadPosRankSum=1.595;SOR=5.054;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr16	33961352	.	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=20.865;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=0.615;QD=2.33;ReadPosRankSum=3.697;SOR=3.486;set=HC	GT:AD:AF:DP	0/1:89,15:0.14:104
chr16	33961363	.	C	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.299;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=17.159;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=0.629;QD=5.92;ReadPosRankSum=-1.222;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:84,22:0.21:106
chr16	33961370	rs72797450	A	C	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr16	33961386	rs76705741	G	A	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-6.992;QD=8.72;ReadPosRankSum=0.125;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:96,35:0.27:131
chr16	33961390	.	GACCCGCTCCGCTGCGAGCCGGCTCTCC	G	1130.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-7.961;QD=7.20;ReadPosRankSum=0.252;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:121,36:0.23:157
chr16	33961400	rs113037697	G	T	970.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.570;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=18.131;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-0.266;QD=6.98;ReadPosRankSum=1.594;SOR=3.145;set=HC	GT:AD:AF:DP	0/1:106,33:0.24:139
chr16	33961418	rs113700972	A	G	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.799;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=17.694;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-0.301;QD=6.30;ReadPosRankSum=3.226;SOR=2.931;set=HC	GT:AD:AF:DP	0/1:116,33:0.22:149
chr16	33961453	rs74808338	A	G	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=6.890;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-12.164;QD=11.84;ReadPosRankSum=0.124;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:124,59:0.32:183
chr16	33961465	rs74932417	G	A	2303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.068;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=7.490;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-13.280;QD=10.02;ReadPosRankSum=-0.456;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:163,67:0.29:230
chr16	33961467	rs74834425	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=32.983;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=0.195;QD=1.79;ReadPosRankSum=2.529;SOR=4.846;set=HC	GT:AD:AF:DP	0/1:209,26:0.11:235
chr16	33961470	.	ACG	A	2413.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.737;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=5.901;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-13.630;QD=10.06;ReadPosRankSum=0.286;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:171,69:0.29:240
chr16	33961471	rs137972467	C	A	413.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=33.015;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=0.120;QD=1.74;ReadPosRankSum=1.846;SOR=4.719;set=HC	GT:AD:AF:DP	0/1:213,25:0.11:238
chr16	33961474	rs78784184	G	C	340.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=33.279;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=0.155;QD=1.41;ReadPosRankSum=0.971;SOR=4.812;set=HC	GT:AD:AF:DP	0/1:216,25:0.10:241
chr16	33961475	.	G	GCA	2578.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.850;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=5.743;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-13.764;QD=10.57;ReadPosRankSum=0.139;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:172,72:0.30:244
chr16	33961481	rs366164	A	T	2352.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=2.879;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-14.271;QD=9.97;ReadPosRankSum=1.497;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:160,76:0.32:236
chr16	33961482	rs78161808	T	C	3913.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.023;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.193;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-13.521;QD=14.82;ReadPosRankSum=0.870;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:163,101:0.38:264
chr16	33961483	rs77018326	G	T	3045.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-14.174;QD=11.49;ReadPosRankSum=0.786;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:181,84:0.32:265
chr16	33961499	rs75192280	CA	TG	4372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=6.606;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-15.627;QD=13.58;ReadPosRankSum=0.035;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:204,118:0.37:322
chr16	33961520	rs75815313	C	T	3814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-13.838;QD=9.21;ReadPosRankSum=3.769;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:302,112:0.27:414
chr16	33961529	rs77202604	G	A	3810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=2.914;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-13.679;QD=8.51;ReadPosRankSum=4.111;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:332,116:0.26:448
chr16	33961539	rs72797452	A	C	6392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-19.746;QD=13.13;ReadPosRankSum=0.009;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:318,169:0.35:487
chr16	33961541	rs79025441	T	G	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.331;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=7.694;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-11.228;QD=2.07;ReadPosRankSum=-5.701;SOR=1.603;set=HC	GT:AD:AF:DP	0/1:445,53:0.11:498
chr16	33961544	rs79909802	C	T	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.567;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=7.244;MLEAC=1;MLEAF=0.500;MQ=55.81;MQRankSum=-11.810;QD=2.95;ReadPosRankSum=-6.106;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:460,63:0.12:523
chr16	33961552	rs76049930	G	A	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=11.530;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-11.260;QD=4.44;ReadPosRankSum=-6.857;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:487,90:0.16:577
chr16	33961555	rs77111738	C	A	3631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.326;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=11.042;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-10.761;QD=6.02;ReadPosRankSum=-6.813;SOR=1.695;set=HC	GT:AD:AF:DP	0/1:502,101:0.17:603
chr16	33961556	rs75931509	A	G	9636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.037;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-20.517;QD=15.70;ReadPosRankSum=-1.602;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:382,232:0.38:614
chr16	33961563	rs112604583	C	G	5301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-17.751;QD=9.54;ReadPosRankSum=-7.393;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:404,152:0.27:556
chr16	33961564	.	A	C	3982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-14.244;QD=5.71;ReadPosRankSum=3.917;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:566,131:0.19:697
chr16	33961580	rs80277405	C	A	6858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=892;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-11.065;QD=7.71;ReadPosRankSum=-5.253;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:634,256:0.29:890
chr16	33961581	.	G	T	4516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DP=901;ExcessHet=3.0103;FS=3.553;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-13.268;QD=5.02;ReadPosRankSum=2.236;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:749,150:0.17:899
chr16	33961597	rs74415086	AG	CA	4884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.753;ClippingRankSum=0.000;DB;DP=987;ExcessHet=3.0103;FS=4.682;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-10.285;QD=4.96;ReadPosRankSum=-0.947;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:817,168:0.17:985
chr16	33961607	rs77756910	G	T	19569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=1028;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-19.769;QD=19.07;ReadPosRankSum=2.603;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:524,502:0.49:1026
chr16	33961621	rs74989315	G	A	5233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=1053;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=55.45;MQRankSum=-8.602;QD=4.98;ReadPosRankSum=-4.351;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:851,199:0.19:1050
chr16	33961628	rs72797455	A	G	20627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.972;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=55.28;MQRankSum=-22.516;QD=20.38;ReadPosRankSum=4.081;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:469,543:0.54:1012
chr16	33961648	.	G	C	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DP=997;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-11.287;QD=0.33;ReadPosRankSum=14.267;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:918,76:0.08:994
chr16	33961658	rs78363140	A	G	14476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=962;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-20.535;QD=15.10;ReadPosRankSum=4.649;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:558,401:0.42:959
chr16	33961658	.	AG	GA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=4;HapScore=1;MGOF=106;MMLQ=24;MQ=49.07;NF=222;NR=252;PP=2944;QD=20;SC=GGTGGGTGCCAGGGGCCGTCC;SbPval=0.54;Source=Platypus;TC=1061;TCF=498;TCR=563;TR=474;WE=33961680;WS=33961648;set=Platypus	GT:AD:AF:DP	0/1:587,474:0.45:1061
chr16	33961659	rs72797456	G	A	21534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.199;ClippingRankSum=0.000;DB;DP=953;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-22.036;QD=22.67;ReadPosRankSum=6.196;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:413,537:0.57:950
chr16	33961671	.	C	A	10515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DP=905;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-13.556;QD=11.66;ReadPosRankSum=0.674;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:608,294:0.33:902
chr16	33961672	rs72797457	T	G	16467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.696;ClippingRankSum=0.000;DB;DP=906;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-19.781;QD=20.51;ReadPosRankSum=1.812;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:387,416:0.52:803
chr16	33961676	rs201135753	T	C	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=899;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=54.81;MQRankSum=-12.741;QD=1.90;ReadPosRankSum=-1.550;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:797,99:0.11:896
chr16	33961689	rs75866886	G	A	14403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=4.161;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-11.437;QD=18.21;ReadPosRankSum=1.208;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:434,357:0.45:791
chr16	33961690	rs75534331	C	G	9114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;ClippingRankSum=0.000;DB;DP=790;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-12.003;QD=11.58;ReadPosRankSum=-1.941;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:543,244:0.31:787
chr16	33961702	rs79080425	C	A	13206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=6.222;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-13.768;QD=19.65;ReadPosRankSum=-1.319;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:352,320:0.48:672
chr16	33961705	rs72797458	A	G	13594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=4.303;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-18.084;QD=21.61;ReadPosRankSum=-3.003;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:294,335:0.53:629
chr16	33961714	rs74614742	G	A	2465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=54.75;MQRankSum=-1.133;QD=4.46;ReadPosRankSum=2.567;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:461,92:0.17:553
chr16	33961725	rs76585222	G	A	3261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-4.077;QD=7.48;ReadPosRankSum=0.317;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:336,100:0.23:436
chr16	33961748	.	C	T	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.203;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=32.000;MLEAC=1;MLEAF=0.500;MQ=54.52;MQRankSum=-11.530;QD=3.65;ReadPosRankSum=-0.213;SOR=2.739;set=HC	GT:AD:AF:DP	0/1:258,51:0.17:309
chr16	33961751	rs79409546	C	A	1070.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.764;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.33;MQRankSum=-3.990;QD=3.74;ReadPosRankSum=-0.601;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:235,51:0.18:286
chr16	33961752	rs77324679	T	C	5047.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=13.273;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-14.413;QD=17.84;ReadPosRankSum=-1.254;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:157,126:0.45:283
chr16	33961752	.	TT	CG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=3;MGOF=116;MMLQ=24;MQ=46.29;NF=34;NR=145;PP=2944;QD=20;SC=GTGGCCCGGCTTTGCCTGAGG;SbPval=0.92;Source=Platypus;TC=340;TCF=91;TCR=249;TR=179;WE=33961802;WS=33961738;set=Platypus	GT:AD:AF:DP	1/0:161,179:0.53:340
chr16	33961753	.	T	G	4987.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=10.589;MLEAC=1;MLEAF=0.500;MQ=54.37;MQRankSum=-14.131;QD=17.81;ReadPosRankSum=-1.206;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:155,125:0.45:280
chr16	33961759	.	G	C	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.447;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=37.327;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-10.141;QD=3.66;ReadPosRankSum=0.447;SOR=3.665;set=HC	GT:AD:AF:DP	0/1:227,39:0.15:266
chr16	33961768	rs115947274	T	G	2447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=53.97;MQRankSum=-11.770;QD=12.95;ReadPosRankSum=0.111;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:122,67:0.35:189
chr16	33961772	rs77705528	G	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.402;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=21.465;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=-2.618;QD=3.28;ReadPosRankSum=2.075;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:182,31:0.15:213
chr16	33961779	rs74332681	C	A	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.807;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=18.926;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-2.350;QD=4.10;ReadPosRankSum=2.909;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:164,32:0.16:196
chr16	33961787	rs201829623	G	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=31.051;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-8.228;QD=2.86;ReadPosRankSum=-1.113;SOR=4.759;set=HC	GT:AD:AF:DP	0/1:156,26:0.14:182
chr16	33961794	rs78260690	C	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:113,52:0.32:165
chr16	33961810	rs78551646	T	C	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:114,38:0.25:152
chr16	33961812	rs201198779	C	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.826;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=7.964;MLEAC=1;MLEAF=0.500;MQ=53.35;MQRankSum=-5.429;QD=2.05;ReadPosRankSum=0.141;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:130,19:0.13:149
chr16	33961846	.	C	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=52.69;MQRankSum=-4.667;QD=0.27;ReadPosRankSum=-0.351;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:106,9:0.08:115
chr16	33961848	.	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.62;MQRankSum=-4.938;QD=3.28;ReadPosRankSum=0.144;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:95,18:0.16:113
chr16	33961852	.	G	A	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.594;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=15.362;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=-0.520;QD=7.13;ReadPosRankSum=-0.413;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:64,42:0.40:106
chr16	33961855	rs72797460	T	G	3031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=5.262;MLEAC=1;MLEAF=0.500;MQ=53.54;MQRankSum=-6.851;QD=25.48;ReadPosRankSum=-0.006;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:44,75:0.63:119
chr16	33961873	rs75103985	G	A	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=8.612;MLEAC=1;MLEAF=0.500;MQ=54.30;MQRankSum=-0.794;QD=15.92;ReadPosRankSum=0.318;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:61,44:0.42:105
chr16	33961877	rs75193282	C	T	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.768;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=6.998;MLEAC=1;MLEAF=0.500;MQ=54.60;MQRankSum=-0.942;QD=15.51;ReadPosRankSum=0.687;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:61,43:0.41:104
chr16	33961878	rs76097628	A	G	2107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.773;MLEAC=1;MLEAF=0.500;MQ=54.60;MQRankSum=-3.826;QD=20.27;ReadPosRankSum=1.393;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:50,54:0.52:104
chr16	33961880	rs79165944	C	T	2152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-3.762;QD=20.90;ReadPosRankSum=1.462;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:50,53:0.51:103
chr16	33961881	rs72797461	A	G	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.832;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-5.885;QD=25.62;ReadPosRankSum=0.180;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:40,64:0.62:104
chr16	33961901	.	C	T	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-1.967;QD=1.64;ReadPosRankSum=-0.368;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:88,11:0.11:99
chr16	33961902	rs72797463	C	A	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.473;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-4.354;QD=20.13;ReadPosRankSum=1.370;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:40,38:0.49:78
chr16	33961917	.	C	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=-1.894;QD=2.38;ReadPosRankSum=1.384;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:75,11:0.13:86
chr16	33961918	rs74202243	G	T	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr16	33961923	.	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-1.466;QD=1.80;ReadPosRankSum=2.669;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:77,10:0.11:87
chr16	33961932	.	T	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=56.33;MQRankSum=-1.623;QD=2.05;ReadPosRankSum=3.117;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:71,10:0.12:81
chr16	33961935	.	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-1.654;QD=3.12;ReadPosRankSum=3.282;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:72,10:0.12:82
chr16	33961936	rs79877727	G	A	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=13.790;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-4.956;QD=17.45;ReadPosRankSum=-0.238;SOR=2.273;set=HC	GT:AD:AF:DP	0/1:40,30:0.43:70
chr16	33961938	rs76855422	T	C	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=12.825;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-4.086;QD=13.19;ReadPosRankSum=-0.785;SOR=2.140;set=HC	GT:AD:AF:DP	0/1:53,28:0.35:81
chr16	33961942	rs79267180	A	G	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-2.332;QD=5.47;ReadPosRankSum=1.395;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr16	33961944	rs79289835	G	C	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=15.611;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-4.679;QD=19.28;ReadPosRankSum=0.083;SOR=2.339;set=HC	GT:AD:AF:DP	0/1:37,36:0.49:73
chr16	33961960	rs78680157	G	C	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.094;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=24.056;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-4.479;QD=11.25;ReadPosRankSum=-2.488;SOR=4.068;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr16	33961961	rs76830030	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=22.713;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-3.812;QD=8.31;ReadPosRankSum=-2.434;SOR=3.816;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr16	33961968	rs75348294	C	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=20.133;MLEAC=1;MLEAF=0.500;MQ=56.51;MQRankSum=-5.518;QD=5.36;ReadPosRankSum=-0.860;SOR=4.241;set=HC	GT:AD:AF:DP	0/1:51,9:0.15:60
chr16	33961975	rs77416639	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=14.568;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-5.028;QD=2.65;ReadPosRankSum=-0.514;SOR=3.803;set=HC	GT:AD:AF:DP	0/1:51,7:0.12:58
chr16	33961983	rs112920839	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-1.342;QD=6.26;ReadPosRankSum=-0.476;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr16	33961990	rs72797465	C	A	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-3.198;QD=7.57;ReadPosRankSum=-1.217;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr16	33962001	rs75137392	G	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.651;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.405;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-4.447;QD=10.57;ReadPosRankSum=-3.048;SOR=1.737;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr16	33962009	rs72797468	T	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=7.970;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-4.599;QD=7.15;ReadPosRankSum=-2.565;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr16	33962014	.	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-1.855;QD=2.82;ReadPosRankSum=-3.146;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr16	33962026	rs72797469	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-5.870;QD=3.60;ReadPosRankSum=-2.600;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr16	33962026	.	AGA	GGC	169	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=2;MGOF=62;MMLQ=24;MQ=51.82;NF=3;NR=9;PP=169;QD=18.5389895719;SC=GGGCCTGGTGAGAGCCCGGAG;SbPval=0.89;Source=Platypus;TC=48;TCF=19;TCR=29;TR=12;WE=33962069;WS=33962016;set=Platypus	GT:AD:AF:DP	0/1:36,12:0.25:48
chr16	33962028	.	A	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-5.944;QD=3.52;ReadPosRankSum=-2.584;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr16	33962040	rs79907733	A	T	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:39,5:0.11:44
chr16	33962277	.	GT	CC	866	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=3;HapScore=1;MGOF=74;MMLQ=19;MQ=53.25;NF=16;NR=15;PP=866;QD=29.6602540278;SC=CGGTCTGCCTGTTCGCACGTG;SbPval=0.46;Source=Platypus;TC=94;TCF=45;TCR=49;TR=31;WE=33962286;WS=33962267;set=Platypus	GT:AD:AF:DP	1/0:63,31:0.33:94
chr16	33962298	.	T	G	455	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=2;MGOF=83;MMLQ=23;MQ=51.82;NF=22;NR=16;PP=455;QD=12.8887161197;SC=GGCGCGAAGGTTCGGGAGTGG;SbPval=0.28;Source=Platypus;TC=93;TCF=46;TCR=47;TR=38;WE=33962306;WS=33962288;set=Platypus	GT:AD:AF:DP	1/0:55,38:0.41:93
chr16	33962365	.	C	T	1066	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=3;HapScore=4;MGOF=129;MMLQ=24;MQ=52.59;NF=11;NR=18;PP=1066;QD=37.9576280189;SC=GGTTCGCCGCCCCACCACCCC;SbPval=0.11;Source=Platypus;TC=49;TCF=12;TCR=37;TR=29;WE=33962373;WS=33962341;set=Platypus	GT:AD:AF:DP	0/1:20,29:0.59:49
chr16	33962391	rs77260646	C	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-0.146;QD=5.43;ReadPosRankSum=-0.319;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr16	33962400	rs74410326	C	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.914;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.061;SOR=0.023;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr16	33962412	rs72797477	A	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=8.625;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-1.702;QD=12.93;ReadPosRankSum=-1.043;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr16	33962416	rs75367546	G	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-1.601;QD=13.87;ReadPosRankSum=-0.734;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr16	33962434	rs149073555	CG	C	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=-1.664;QD=15.52;ReadPosRankSum=-0.857;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr16	33962446	rs117915306	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=55.06;MQRankSum=-1.798;QD=16.52;ReadPosRankSum=-0.947;SOR=0.053;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr16	33962456	rs75550881	G	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.473;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=54.81;MQRankSum=-1.798;QD=16.52;ReadPosRankSum=0.094;SOR=0.053;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr16	33962470	rs74988619	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-2.466;QD=14.27;ReadPosRankSum=1.783;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	33962479	rs74016524	T	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.43;MQRankSum=-2.366;QD=20.70;ReadPosRankSum=1.581;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr16	33965402	.	G	A	1580	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=4;HapScore=2;MGOF=153;MMLQ=28;MQ=56.87;NF=37;NR=1;PP=1580;QD=42.4939792776;SC=TGTTGGGAGCGCCCTTGCCAA;SbPval=0.95;Source=Platypus;TC=98;TCF=90;TCR=8;TR=38;WE=33965416;WS=33965399;set=Platypus	GT:AD:AF:DP	1/0:60,38:0.39:98
chr16	33965407	rs140145020	T	C	1320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.169;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-1.199;QD=22.01;ReadPosRankSum=1.105;SOR=1.350;set=HC	GT:AD:AF:DP	0/1:26,34:0.57:60
chr16	33965407	.	TG	CA	2336	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=1;HapScore=2;MGOF=153;MMLQ=24;MQ=55.78;NF=28;NR=4;PP=2336;QD=74.6708710894;SC=GGAGCGCCCTTGCCAAATCCA;SbPval=0.55;Source=Platypus;TC=114;TCF=100;TCR=14;TR=32;WE=33965416;WS=33965399;set=Platypus	GT:AD:AF:DP	0/1:82,32:0.28:114
chr16	33965408	rs146483430	G	A	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.549;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.169;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-1.199;QD=14.33;ReadPosRankSum=1.029;SOR=1.350;set=HC	GT:AD:AF:DP	0/1:26,34:0.57:60
chr16	33965456	rs79575365	T	C	3954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.601;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=9.309;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.841;QD=24.87;ReadPosRankSum=0.062;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:63,96:0.60:159
chr16	33965460	rs112558134	G	A	4077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=9.774;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.859;QD=22.91;ReadPosRankSum=-0.157;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:76,102:0.57:178
chr16	33965482	rs370138825	GA	G	5596.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:118,137:0.54:255
chr16	33965489	.	A	T	6049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.735;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=15.238;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-2.742;QD=22.16;ReadPosRankSum=0.403;SOR=1.415;set=HC	GT:AD:AF:DP	0/1:124,149:0.55:273
chr16	33965493	.	T	C	6322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.421;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=13.097;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-2.759;QD=22.19;ReadPosRankSum=0.651;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:130,155:0.54:285
chr16	33965496	.	A	T	6431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=10.394;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-2.760;QD=21.58;ReadPosRankSum=0.604;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:136,162:0.54:298
chr16	33965505	rs375920374	C	T	6598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=7.669;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-3.455;QD=20.30;ReadPosRankSum=1.212;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:149,176:0.54:325
chr16	33965507	.	G	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=3;MGOF=114;MMLQ=24;MQ=53.78;NF=169;NR=73;PP=2962;QD=20;SC=TTGCAGGACAGATTGATCATC;SbPval=0.79;Source=Platypus;TC=569;TCF=369;TCR=200;TR=242;WE=33965515;WS=33965439;set=Platypus	GT:AD:AF:DP	1/0:327,242:0.43:569
chr16	33965533	rs78817399	A	C	11026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.567;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=6.192;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-5.673;QD=23.92;ReadPosRankSum=-0.648;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:187,274:0.59:461
chr16	33965537	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DP=482;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=0.898;QD=0.39;ReadPosRankSum=-6.798;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:452,25:0.05:477
chr16	33965538	rs146300192	A	G	12335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=5.125;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-5.424;QD=25.54;ReadPosRankSum=-1.260;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:189,294:0.61:483
chr16	33965542	.	C	T	9978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.452;ClippingRankSum=0.000;DP=510;ExcessHet=3.0103;FS=4.073;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-3.250;QD=19.76;ReadPosRankSum=4.113;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:248,257:0.51:505
chr16	33965560	rs75603223	T	A	13501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-5.900;QD=23.36;ReadPosRankSum=-1.642;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:198,380:0.66:578
chr16	33965560	.	TTGCCTGTCTG	ATGCCTGTCTA,ATGCCTGTCTG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=141;MMLQ=27;MQ=55.47;NF=138,350;NR=118,264;PP=2944,2962;QD=20;SC=TCCCAGGGCTTTGCCTGTCTG;SbPval=0.47;Source=Platypus;TC=885;TCF=491;TCR=394;TR=256,614;WE=33965605;WS=33965550;set=Platypus	GT:AF:DP	0/1:0.29:885
chr16	33965563	.	C	T	1562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=0.637;QD=2.66;ReadPosRankSum=-5.828;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:509,78:0.13:587
chr16	33965582	rs199951204	C	T	11698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-4.347;QD=19.56;ReadPosRankSum=0.442;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:288,310:0.52:598
chr16	33965589	rs62030476	G	A	14901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-4.210;QD=25.21;ReadPosRankSum=-1.090;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:170,421:0.71:591
chr16	33965618	.	C	T	7385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DP=777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-14.772;QD=9.62;ReadPosRankSum=1.986;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:552,216:0.28:768
chr16	33965620	.	G	A	2228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.816;ClippingRankSum=0.000;DP=754;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-5.958;QD=2.99;ReadPosRankSum=1.632;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:645,101:0.14:746
chr16	33965624	.	G	T	2360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DP=734;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-5.889;QD=3.26;ReadPosRankSum=0.905;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:622,103:0.14:725
chr16	33965627	rs74218440	T	C	7965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-16.165;QD=13.76;ReadPosRankSum=-0.582;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:363,216:0.37:579
chr16	33965635	.	G	A	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-5.870;QD=3.43;ReadPosRankSum=0.493;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:568,97:0.15:665
chr16	33965636	.	G	A	4227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0.000;DP=667;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=1.350;QD=6.44;ReadPosRankSum=0.764;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:518,138:0.21:656
chr16	33965642	.	TGA	T	1897.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.540;ClippingRankSum=0.000;DP=613;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-12.113;QD=3.15;ReadPosRankSum=-2.842;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:522,81:0.13:603
chr16	33965643	.	G	T	2332.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-5.011;QD=3.95;ReadPosRankSum=0.130;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:503,88:0.15:591
chr16	33965644	rs72799208	A	G	16058.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.084;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=4.776;QD=27.40;ReadPosRankSum=2.649;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:190,396:0.68:586
chr16	33965646	.	G	A	8180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DP=589;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-7.982;QD=16.26;ReadPosRankSum=0.242;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:290,213:0.42:503
chr16	33965655	rs113687113	C	A	6273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.948;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=6.476;QD=15.30;ReadPosRankSum=2.704;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:244,166:0.40:410
chr16	33965665	rs74016532	C	T	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:327,122:0.27:449
chr16	33965666	.	G	A	5596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=2.843;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=2.588;QD=12.69;ReadPosRankSum=2.617;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:294,147:0.33:441
chr16	33965669	.	C	G	5152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DP=424;ExcessHet=3.0103;FS=3.767;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=3.146;QD=12.42;ReadPosRankSum=2.029;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:277,138:0.33:415
chr16	33965672	.	C	T	2751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=1.410;QD=6.83;ReadPosRankSum=1.109;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:318,85:0.21:403
chr16	33965681	.	G	GA	4863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=4.891;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.954;QD=13.15;ReadPosRankSum=1.772;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:241,129:0.35:370
chr16	33965684	.	C	T	2418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=4.205;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.462;QD=6.99;ReadPosRankSum=1.087;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:273,73:0.21:346
chr16	33965685	.	G	A	2640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.543;QD=7.74;ReadPosRankSum=-2.372;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:261,80:0.23:341
chr16	33965687	rs78198861	C	T	2584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.222;QD=7.90;ReadPosRankSum=-2.719;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:249,78:0.24:327
chr16	33965688	.	G	C	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=3.469;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.059;QD=6.61;ReadPosRankSum=0.732;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:254,70:0.22:324
chr16	33965690	rs74964080	C	T	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:203,112:0.36:315
chr16	33965705	.	G	A	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.713;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.967;QD=6.94;ReadPosRankSum=0.066;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:180,46:0.20:226
chr16	33965708	.	G	A	4858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=6.317;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.157;QD=22.29;ReadPosRankSum=1.994;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:98,120:0.55:218
chr16	33965711	rs76711006	G	A	7009.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:42,172:0.80:214
chr16	33965727	.	C	T	2039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=12.652;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.982;QD=11.66;ReadPosRankSum=2.382;SOR=1.891;set=HC	GT:AD:AF:DP	0/1:119,56:0.32:175
chr16	33965731	.	C	T	1947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=11.930;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.003;QD=11.88;ReadPosRankSum=1.650;SOR=1.976;set=HC	GT:AD:AF:DP	0/1:110,54:0.33:164
chr16	33965735	.	C	T	1923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=11.956;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.008;QD=11.80;ReadPosRankSum=1.102;SOR=1.996;set=HC	GT:AD:AF:DP	0/1:109,54:0.33:163
chr16	33965736	rs74212775	G	A	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.792;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.612;QD=7.14;ReadPosRankSum=-0.354;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:123,36:0.23:159
chr16	33965741	rs111610856	C	T	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=10.600;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.117;QD=13.15;ReadPosRankSum=-0.434;SOR=1.988;set=HC	GT:AD:AF:DP	0/1:92,56:0.38:148
chr16	33965761	.	GG	AA	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.617;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=4.414;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=5.57;ReadPosRankSum=1.245;SOR=1.427;set=HC	GT:AD:AF:DP	0/1:106,26:0.20:132
chr16	34257013	rs1019991	A	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:97,34:0.26:131
chr16	34318731	rs6563853	T	G	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr16	34681677	.	C	A	1367.77	.	AC=1;AF=0.500;AN=2;DP=202;set=Intersection	GT:AD:AF:DP	0/1:127,74:0.37:201
chr16	34681938	rs237988	C	T	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	34682019	rs237989	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	46565019	rs1436436	T	G	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	46602819	rs12934443	C	T	6393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.05;ReadPosRankSum=0.884;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:105,270:0.72:375
chr16	46637746	rs4967259	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	46642456	rs8052092	A	G	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	46651417	rs34949348	TA	T	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	46655088	rs144172091	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.875;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr16	46655210	rs6598679	A	G	6932.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	46696284	rs168745	G	A	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	46697098	rs2304492	A	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr16	46705502	rs36310	T	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr16	46705576	rs4966616	C	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-0.313;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:73,18:0.20:91
chr16	46714529	rs700582	A	G	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:19,64:0.77:83
chr16	46715191	rs700581	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	46723598	rs33994299	T	C	4799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.673;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=-0.337;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:74,208:0.74:282
chr16	46743355	rs11420228	G	GA	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.660;QD=11.55;ReadPosRankSum=0.779;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:7,31:0.82:38
chr16	46743675	rs4141491	G	A	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:28,78:0.74:106
chr16	46755213	rs194055	C	G	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	46764482	rs36460	A	C	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	46773752	rs28185	G	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	46918908	rs59708508	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr16	47347780	rs2058769	G	A	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	47399670	.	CTT	C	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-0.496;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr16	47462851	rs17811434	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	47549597	rs78297758	G	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr16	47630539	rs12445959	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:48,13:0.21:61
chr16	47684686	rs150516784	TATTA	T	2846.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	48247523	rs11866529	T	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr16	48248918	rs8047091	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:61,26:0.30:87
chr16	48250011	rs11863233	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.895;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr16	48250026	rs11863236	G	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=1.575;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:124,31:0.20:155
chr16	48250218	rs28654935	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.018;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=1.581;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr16	48250221	rs28376623	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.702;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=1.751;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr16	48256484	rs16945972	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.437;SOR=1.936;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr16	48256602	rs16945974	T	C	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:139,58:0.29:197
chr16	48258381	rs73546424	T	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.502;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=7.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.661;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:184,50:0.21:234
chr16	48258419	rs9927238	C	A	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-1.930;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:112,32:0.22:144
chr16	48258424	rs9933821	T	C	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-1.872;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:102,28:0.22:130
chr16	48264617	rs13336759	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.944;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:46,8:0.15:54
chr16	48265777	rs16945988	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.536;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:120,32:0.21:152
chr16	48292513	rs16946038	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=1.372;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr16	48329918	rs5816590	TC	T	432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.471;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.244;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:94,24:0.20:118
chr16	48390512	rs8053839	G	T	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=0.572;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr16	48419291	.	GGCC	G	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.322;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr16	48579938	rs57931869	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=2.230;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr16	49412531	rs27813	A	G	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	49412608	rs27783	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.222;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:74,17:0.19:91
chr16	49412679	rs56152748	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.102;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.146;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr16	49432926	rs4785287	C	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.584;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.102;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr16	49557441	rs2287313	A	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr16	49557482	rs2287314	C	T	5512.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	49660026	rs16947716	A	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.355;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=1.771;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:83,25:0.23:108
chr16	49672520	rs3803665	A	G	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.299;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:182,61:0.25:243
chr16	49764948	rs2292155	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr16	50059279	rs9934704	C	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	50059314	rs9924833	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	50059500	rs7194313	C	T	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	50067905	rs9302745	G	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	50069312	rs2041918	C	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.838;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:98,19:0.16:117
chr16	50100214	rs7192665	G	C	7706.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:75,322:0.81:397
chr16	50100253	rs4389139	T	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.401;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:398,104:0.21:502
chr16	50100274	rs6500280	G	C	9218.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:110,393:0.78:503
chr16	50102618	rs60730387	G	GAAAT	4747.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	50104234	rs7191384	T	C	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:18,101:0.85:119
chr16	50106594	rs2287197	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.570;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr16	50109478	rs12931497	G	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=4.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.290;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:133,41:0.24:174
chr16	50112971	rs66756058	GT	G	307.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr16	50117828	rs5816672	CT	C	713.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.514;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:93,69:0.43:162
chr16	50118245	rs877639	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr16	50120122	rs2287196	C	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr16	50128572	rs60561577	A	G	229.78	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr16	50251590	rs3887556	G	A	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	50251671	rs10530119	G	GTCTCTCTCTCTCTCTCTC	717.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=42.22;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	50261735	rs4624170	C	T	6978.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	50322034	.	C	T	2155.77	.	AC=1;AF=0.500;AN=2;DP=221;set=Intersection	GT:AD:AF:DP	0/1:123,98:0.44:221
chr16	50323211	rs13332825	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	50326661	rs8051594	A	G	10593.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr16	50327456	rs2302713	C	T	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	50328421	rs2302716	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	50328483	rs8061123	G	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	50338267	.	G	A	338.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr16	50342847	rs2302681	C	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	50343373	.	A	ATGGT	1156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-1.452;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:103,35:0.25:138
chr16	50345710	.	GCCC	G,GC	869.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=7.959;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.408;QD=29.99;ReadPosRankSum=1.527;SOR=3.418;set=HC	GT:AD:AF:DP	1/2:1,16,12:0.55,0.41:29
chr16	50345778	rs2302679	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	50346748	rs3214383	T	TCC	1165.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	50348409	rs9926131	A	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	50359901	rs8046783	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	50367633	rs56370009	T	TA	99.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	50368863	rs143461189	GCATTTTTTTCCCCA	G	1719.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	50642201	rs933566	G	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-1.761;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:231,66:0.22:297
chr16	50709723	rs6596	G	A	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	50731096	rs5743266	G	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	50733374	rs2076753	G	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	50733969	rs2111235	A	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	50744624	rs2066842	C	T	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	50745199	rs2066843	C	T	15227.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr16	50745926	rs2066844	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=2.453;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:125,43:0.26:168
chr16	50756774	rs5743289	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	50756996	rs11292073	TA	T	53.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.68;ReadPosRankSum=-0.366;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	50759547	rs1077861	A	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	50827601	rs2302759	A	G	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	51170915	.	T	C	423.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr16	51171126	rs74499562	T	C	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.921;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:226,88:0.28:314
chr16	51171175	rs4614723	C	T	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	51172677	rs11645288	G	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	51177113	rs4399530	A	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr16	51177327	rs34204387	G	GA,GAA	4379.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.402;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.315;QD=23.55;ReadPosRankSum=0.551;SOR=0.843;set=HC	GT:AD:AF:DP	1/2:3,52,131:0.28,0.70:186
chr16	52085593	rs1582317	A	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:123,56:0.31:179
chr16	52107849	rs33338	C	A	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	52473263	rs9925256	A	G	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,91:0.68:133
chr16	52479771	rs2075236	A	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr16	52502318	rs2287144	A	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:125,56:0.31:181
chr16	52502571	rs9928698	A	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chr16	52992947	rs9933492	T	C	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	52993016	rs9931362	A	C	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr16	53035592	rs12149531	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr16	53037529	rs6499205	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	53319390	rs112281896	T	TAATGA	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	53341748	rs6499548	T	G	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	53404203	rs10775327	C	A	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr16	53476804	rs17800577	G	A	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	53481010	rs17800727	A	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr16	53487218	rs9941254	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	53487589	rs17192524	G	A	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr16	53493346	rs66521736	AT	A	401.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr16	53496598	rs7204496	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	53499599	rs1072910	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	53503934	rs1131220	G	A	19203.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.33;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr16	53503934	.	GCCTGGGCGC	ACCTGGGCGC,ACCTGGGCGG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=238,147;NR=233,139;PP=2469,2944;QD=5.31586244702;SC=ATGGAGGGACGCCTGGGCGCA;SbPval=0.53;Source=Platypus;TC=472;TCF=238;TCR=234;TR=471,286;WE=53503951;WS=53503924;set=Platypus	GT:AF:DP	0/1:1.00:472
chr16	53503943	rs11540358	C	G	7711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.492;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-0.588;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:178,333:0.65:511
chr16	53504721	rs10748	T	C	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr16	53513033	rs8043918	C	T	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	53513055	rs8049033	T	C	6040.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	53524308	rs3929	G	C	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	53526551	rs9931702	C	T	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	53635933	rs4784319	A	T	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr16	53656135	rs111775292	G	C	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	53672355	rs7203525	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr16	53699003	rs4133017	G	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr16	53738283	rs4783818	A	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr16	53860481	rs3826169	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr16	53878247	rs62033438	A	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr16	53913930	rs11076004	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr16	54318102	rs8050831	C	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	54318528	rs1450355	A	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=3.209;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	54319571	rs1868692	A	G	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	54319994	rs1868691	G	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	54691273	rs4784409	C	A	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:65,116:0.64:181
chr16	55359126	rs31078	A	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:22,68:0.76:90
chr16	55359141	rs31079	T	C	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr16	55360208	rs31081	G	T	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=-0.882;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:16,53:0.77:69
chr16	55361493	rs31082	C	T	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.200;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:61,74:0.55:135
chr16	55361504	rs146328122	C	T	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.493;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:58,67:0.54:125
chr16	55362502	rs31085	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr16	55362542	rs31086	C	G	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr16	55363238	rs31087	G	A	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:42,121:0.74:163
chr16	55513623	rs243862	C	T	4637.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:54,199:0.79:253
chr16	55515695	rs708269	A	T	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:72,135:0.65:207
chr16	55516708	rs857403	T	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	55523705	rs243849	T	C	7182.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	55525913	rs243846	G	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=3.804;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	55527298	rs243843	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	55530762	rs171498	G	T	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=3.675;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	55530772	rs243838	T	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.79;SOR=4.235;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	55536622	rs243835	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	55536637	rs17860002	G	C	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:12,69:0.85:81
chr16	55536687	rs243834	A	G	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	55539191	rs243832	C	G	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	55562257	rs837549	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	55562466	rs837550	G	A	6943.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:93,303:0.77:396
chr16	55562572	rs71393085	T	C	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.986;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-1.063;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr16	55579899	rs2397722	G	A	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	55583149	rs2160277	T	A	826.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr16	55583448	rs9934904	A	T	166.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	55601388	rs1502003	A	G	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	55612918	rs4784549	T	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	55617127	rs12934747	C	T	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	55726058	rs11568324	C	T	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.594;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:117,30:0.20:147
chr16	55728081	rs28613651	T	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	55731735	rs8047672	G	A	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr16	55731835	rs5569	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-2.191;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:109,32:0.23:141
chr16	55731946	rs998424	G	A	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:113,63:0.36:176
chr16	55735912	rs2242447	C	T	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:36,154:0.81:190
chr16	55806311	rs28538364	G	T	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	55806409	rs28366434	T	C	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	55806532	rs143032941	C	CAATACCT	6528.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	55807252	rs62030211	G	T	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.27;QD=42.09;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	55807256	rs60044394	A	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.27;QD=42.09;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	55807448	rs149224370	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	55807461	rs28444662	C	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	55807511	rs28411268	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	55813552	rs28666799	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	55813600	rs28538101	T	C	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.18;QD=26.16;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	55813644	rs28418425	C	T	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.49;QD=25.72;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	55813712	rs28613114	G	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	55813750	rs28594163	G	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	55844609	rs2244613	G	T	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.73;ReadPosRankSum=0.872;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:55,55:0.50:110
chr16	55844617	rs2244614	G	A	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=-0.549;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:48,51:0.52:99
chr16	55844925	rs11307366	A	AAC	45.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=0.617;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:93,20:0.18:113
chr16	55844926	rs112236246	A	AC	468.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.060;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:74,42:0.36:116
chr16	55845084	.	T	TG	955.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr16	55845095	rs142887261	C	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.260;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.513;QD=2.30;ReadPosRankSum=-0.257;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr16	55845122	rs146150314	C	CA	467.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.061;QD=13.36;ReadPosRankSum=2.237;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr16	55847045	rs3859092	A	G	1997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=6.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.29;ReadPosRankSum=-2.617;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,54:0.71:76
chr16	55847051	rs3859093	C	T	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.333;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.47;ReadPosRankSum=-1.697;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr16	55850708	rs2302719	T	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr16	55854246	.	G	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.72;MQRankSum=-2.065;QD=3.34;ReadPosRankSum=0.901;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr16	55854259	rs2307237	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.922;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.76;MQRankSum=-2.002;QD=3.73;ReadPosRankSum=0.086;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr16	55854412	rs2307229	A	T	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=0.465;QD=4.59;ReadPosRankSum=-2.814;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:71,29:0.29:100
chr16	55854452	rs2307233	G	A	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=2.680;QD=8.77;ReadPosRankSum=3.499;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr16	55854455	rs2307235	A	C	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=2.650;QD=8.64;ReadPosRankSum=3.864;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr16	55854473	rs4784587	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-7.241;QD=1.68;ReadPosRankSum=-4.380;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr16	55854514	rs8192940	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr16	55855150	rs3217164	TG	T	3381.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:60,97:0.62:157
chr16	55857396	rs150951789	A	C	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:121,85:0.41:206
chr16	55862571	rs79647997	A	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-2.735;QD=3.79;ReadPosRankSum=-2.066;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr16	55862583	rs77360769	G	T	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-2.702;QD=3.94;ReadPosRankSum=-1.087;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:138,26:0.16:164
chr16	55862590	rs79821028	G	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-3.627;QD=3.78;ReadPosRankSum=-0.784;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:156,30:0.16:186
chr16	55862605	rs3848300	G	A	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:79,176:0.69:255
chr16	55862647	rs62028646	A	G	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-6.376;QD=2.76;ReadPosRankSum=0.071;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:347,96:0.22:443
chr16	55862691	rs62028647	G	A	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-4.805;QD=2.99;ReadPosRankSum=-1.036;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:341,108:0.24:449
chr16	55862717	rs76828834	T	C	2502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-8.583;QD=6.09;ReadPosRankSum=0.738;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:320,91:0.22:411
chr16	55862720	rs74019278	T	C	2499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.652;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-8.579;QD=6.16;ReadPosRankSum=0.719;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:316,90:0.22:406
chr16	55862762	rs3826194	C	G	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.858;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=5.964;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-11.725;QD=2.00;ReadPosRankSum=-2.987;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:255,61:0.19:316
chr16	55862791	rs114632091	T	C	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-16.796;QD=2.24;ReadPosRankSum=-1.248;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:270,72:0.21:342
chr16	55862824	rs3826192	C	T	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:320,123:0.28:443
chr16	55862836	rs3826191	G	A	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:344,140:0.29:484
chr16	55862883	rs3826190	C	A	2933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=4.510;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-18.742;QD=4.67;ReadPosRankSum=1.737;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:441,187:0.30:628
chr16	55862901	rs3826189	T	G	2536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=5.741;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-18.299;QD=4.07;ReadPosRankSum=1.159;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:453,170:0.27:623
chr16	55862955	.	G	C	1838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DP=384;ExcessHet=3.0103;FS=22.178;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-16.289;QD=4.80;ReadPosRankSum=-3.805;SOR=1.680;set=HC	GT:AD:AF:DP	0/1:309,74:0.19:383
chr16	55862958	rs3826188	GC	AG	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.646;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=25.649;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-16.858;QD=5.20;ReadPosRankSum=-1.697;SOR=1.941;set=HC	GT:AD:AF:DP	0/1:302,61:0.17:363
chr16	55862961	rs3826187	T	A	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=23.038;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-17.354;QD=4.31;ReadPosRankSum=-1.915;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:292,56:0.16:348
chr16	55866894	rs56278207	T	TA	6102.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;MQ=59.65;set=Intersection	GT:AD:AF:DP	0/1:71,171:0.71:242
chr16	55867042	rs3815583	A	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:74,35:0.32:109
chr16	55883618	rs2160276	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.888;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:123,19:0.13:142
chr16	55905636	rs3859108	A	G	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	55907600	rs6416763	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr16	55909163	rs7194945	T	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:89,33:0.27:122
chr16	56228066	rs1190761	A	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	56362725	rs2241952	T	C	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:50,170:0.77:220
chr16	56368689	rs1065375	C	T	6286.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:101,273:0.73:374
chr16	56377748	rs1799917	A	G	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.711;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:316,85:0.21:401
chr16	56388893	rs116862304	C	T	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.719;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:360,86:0.19:446
chr16	56396486	rs4924	C	T	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.215;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:307,68:0.18:375
chr16	56436824	rs2440472	A	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.705;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=1.318;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:158,45:0.22:203
chr16	56441862	rs2920704	A	G	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.251;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:164,51:0.24:215
chr16	56442066	rs4238787	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.028;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:57,11:0.16:68
chr16	56468561	rs8056687	C	T	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr16	56504724	rs13337155	G	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.273;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=1.962;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr16	56548501	rs4784677	C	T	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	56599221	rs182221	C	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	56601720	rs666636	A	G	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	56601720	.	ATT	GTC	1976	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=3;HapScore=1;MGOF=0;MMLQ=20;MQ=60.0;NF=29;NR=39;PP=1976;QD=29.8451158068;SC=TGTAAAACATATTGGAAGAGT;SbPval=0.6;Source=Platypus;TC=71;TCF=31;TCR=40;TR=68;WE=56601730;WS=56601710;set=Platypus	GT:AD:AF:DP	1/1:3,68:0.96:71
chr16	56601722	rs666647	T	C	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.71;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	56602671	rs762604	C	T	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr16	56642491	rs28366003	A	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:17,84:0.83:101
chr16	56660841	rs72818418	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.426;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:218,33:0.13:251
chr16	56666848	rs56096004	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.909;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr16	56666886	rs1827208	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr16	56667242	rs55963173	T	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=4.165;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.608;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:183,40:0.18:223
chr16	56667282	rs1827210	C	A	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	56667614	rs2270836	C	T	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:15,74:0.83:89
chr16	56667854	rs2270837	A	G	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	56673227	rs11640851	C	A	5425.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:41,136:0.77:177
chr16	56673249	rs11647171	T	C	6476.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:56,182:0.76:238
chr16	56673436	rs58069153	A	AAG	4242.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	56683626	rs7189840	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:6,42:0.88:48
chr16	56685916	rs149279319	C	A	4641.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:40,199:0.83:239
chr16	56686002	rs2070838	G	C	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=1.690;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	56686005	rs4619400	T	A	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.715;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	56686030	rs964372	C	G	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	56686380	rs2013775	T	C	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-3.731;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:382,96:0.20:478
chr16	56686470	rs12051311	C	T	10191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.23;ReadPosRankSum=-1.534;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:116,443:0.79:559
chr16	56686471	rs964374	G	T	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.212;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:433,116:0.21:549
chr16	56687031	rs35231457	AT	A	2212.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:30,129:0.81:159
chr16	56691893	rs186322428	G	T	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.073;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:174,51:0.23:225
chr16	56700578	rs34777440	C	CTT	675.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr16	56701294	rs2298847	T	A	8144.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:30,205:0.87:235
chr16	56701315	rs2298846	A	G	7974.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:30,203:0.87:233
chr16	56701827	rs12448654	T	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.014;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:157,48:0.23:205
chr16	56701977	rs78780944	T	A	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:47,186:0.80:233
chr16	56702000	rs904770	T	C	7572.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	56704955	rs71381131	A	AT	4984.73	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:82,276:0.77:358
chr16	56709728	rs8046181	GA	CG	2759.77	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=9.294;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.58;SOR=4.067;set=HC	GT:AD:AF:DP	1/1:1,67:0.99:68
chr16	56716323	rs12921022	G	T	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:28,89:0.76:117
chr16	56718015	rs34700091	AT	A	476.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.637;QD=3.67;ReadPosRankSum=-0.154;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:74,56:0.43:130
chr16	56832302	rs9927884	C	T	716.98	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr16	56852822	rs1561139	G	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	56855496	rs2118017	C	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	56863027	rs3816116	G	A	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:50,105:0.68:155
chr16	56864398	rs1561140	C	T	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	56864618	rs4461062	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	56867101	.	ATCTCC	A	49	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=5;HapScore=1;MGOF=5;MMLQ=24;MQ=60.0;NF=2;NR=0;PP=49;QD=33.0;SC=AGTTGGTTTTATCTCCTCTCC;SbPval=1.0;Source=Platypus;TC=15;TCF=12;TCR=3;TR=2;WE=56867113;WS=56867091;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr16	56868700	rs1347591	A	G	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	56871469	rs145442551	TTTTATTGATTAC	T	4142.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:43,104:0.71:147
chr16	56872722	rs3764265	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:16,75:0.82:91
chr16	56873495	rs1138295	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.744;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:99,26:0.21:125
chr16	56876467	rs5817078	CT	C	88.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.40;ReadPosRankSum=-1.408;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr16	56899540	rs2304478	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:7,42:0.86:49
chr16	56904587	rs1529927	C	G	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	56921840	rs36049418	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.934;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr16	56933315	rs9922270	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	56966011	rs37025	G	A	4521.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:41,201:0.83:242
chr16	56966071	rs37024	T	G	6545.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:70,303:0.81:373
chr16	56994394	rs61631085	GT	G	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.559;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr16	56994528	rs17231506	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.594;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:132,32:0.20:164
chr16	56994894	rs4783961	G	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.926;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.517;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:160,40:0.20:200
chr16	56995038	rs4783962	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr16	56995236	rs1800775	C	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.236;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:120,23:0.16:143
chr16	56996158	rs3816117	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.136;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr16	56996211	rs711752	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.454;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr16	56996288	rs708272	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.091;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr16	57003723	rs891141	G	T	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	57003977	rs891142	T	C	12574.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr16	57003980	rs891143	T	C	12407.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	57004889	rs7205804	G	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=6.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.152;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:204,52:0.20:256
chr16	57005301	rs1532625	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:111,53:0.32:164
chr16	57007446	rs11076176	T	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.222;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:84,14:0.14:98
chr16	57007451	rs289714	G	A	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:14,81:0.85:95
chr16	57015463	rs7195984	G	A	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	57015545	rs1800774	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.644;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:153,27:0.15:180
chr16	57016092	rs5882	G	A	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	57017474	rs289741	G	A	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	57017762	rs289742	C	G	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	57057619	rs1684575	G	T	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	57057654	rs1672865	A	G	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	57059484	rs16965150	C	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.716;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:157,41:0.21:198
chr16	57062177	rs1684576	T	A	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	57065121	rs16965220	C	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr16	57067595	rs58124158	A	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=1.521;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:58,11:0.16:69
chr16	57069992	rs113408105	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.957;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:127,23:0.15:150
chr16	57070004	rs11409789	C	CT	5739.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	57070165	rs1651668	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	57071113	rs1684579	T	C	2393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.41;ReadPosRankSum=0.594;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:29,101:0.78:130
chr16	57071113	.	TA	CG	1219	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=24;MQ=60.0;NF=61;NR=27;PP=1219;QD=14.4598622143;SC=ACAGCCTCAGTAACAACGGGC;SbPval=0.57;Source=Platypus;TC=117;TCF=80;TCR=37;TR=88;WE=57071122;WS=57071103;set=Platypus	GT:AD:AF:DP	1/0:29,88:0.75:117
chr16	57071114	rs1672867	A	G	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.26;SOR=1.256;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	57071232	rs1684580	C	G	9115.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:2,352:0.99:354
chr16	57071335	rs1651670	G	A	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	57071375	rs1672866	T	C	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	57073683	rs864750	G	C	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	57074451	rs289726	T	C	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	57075379	rs35622257	G	GT	3158.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	57075781	rs289727	C	T	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	57076115	rs158482	T	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	57080528	rs289723	C	A	6524.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	57103579	rs289710	G	A	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	57103854	rs289711	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	57111825	rs27392	T	C	11774.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr16	57113229	rs42221	A	G	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:31,109:0.78:140
chr16	57114924	rs154045	A	G	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=1.218;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:10,33:0.77:43
chr16	57114982	rs154044	C	T	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=1.316;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,53:0.71:75
chr16	57115274	rs154043	T	C	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr16	57115604	rs77008839	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.754;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:44,8:0.15:52
chr16	57116287	rs27195	A	G	5528.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:46,230:0.83:276
chr16	57116514	rs27194	T	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr16	57127883	rs9926472	C	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-2.706;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:98,29:0.23:127
chr16	57128099	rs8057953	T	C	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=2.595;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:127,40:0.24:167
chr16	57128132	rs75443589	C	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-1.645;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:83,29:0.26:112
chr16	57144920	rs8053682	TG	AC	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	57149318	rs142941150	G	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-1.030;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:346,67:0.16:413
chr16	57155457	rs4783976	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr16	57161875	rs142917135	TC	T	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr16	57170936	rs72778715	G	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.342;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:73,12:0.14:85
chr16	57171233	rs2305693	C	G	11295.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr16	57197745	rs62037356	G	T	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	57242093	rs148079684	T	TTTTTG	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.88;ReadPosRankSum=-0.392;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr16	57249981	rs11391063	A	AT	1973.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=13.794;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.928;QD=6.39;ReadPosRankSum=0.341;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:143,166:0.54:309
chr16	57255363	rs7206038	T	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	57261146	rs11643790	A	C	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	57392733	rs4359426	A	C	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	57449607	rs149367659	CG	C	642.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr16	57481238	rs11862474	C	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr16	57481305	rs178602	T	C	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	57486583	rs62037143	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr16	57494178	rs223868	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	57494992	rs223869	C	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr16	57495026	rs223870	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	57496494	rs178601	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	57496841	rs142861649	TGCCCCCCTGCACCAGGGCTTTAGCTTTGGGA	T	2637.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:15,65:0.81:80
chr16	57496931	rs223837	G	C	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=28.92;SOR=4.119;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	57497579	rs73561591	C	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:53,17:0.24:70
chr16	57499782	rs1114156	T	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.071;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chr16	57499902	rs4937	T	C	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	57503330	rs2161647	C	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:29,124:0.81:153
chr16	57503360	rs170365	C	T	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:21,92:0.81:113
chr16	57503773	rs223874	G	A	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	57507991	rs75862393	C	T	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.151;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:82,32:0.28:114
chr16	57509164	rs223877	A	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	57509572	.	ATCTCTCTC	A	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.04;ReadPosRankSum=-1.061;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:1,18:0.95:19
chr16	57513275	rs116771309	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:25,85:0.77:110
chr16	57513539	rs62039360	G	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr16	57551966	rs28649020	A	T	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:24,88:0.79:112
chr16	57552088	rs28756858	T	C	11770.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:136,524:0.79:660
chr16	57562423	rs8045906	T	C	6003.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	57562804	rs12935069	G	A	9019.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr16	57563111	rs4784815	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	57595999	rs1004363	A	G	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	57596552	rs1859259	C	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	57601792	rs9937918	C	T	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:65,148:0.69:213
chr16	57624516	rs71387184	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-1.007;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:84,12:0.12:96
chr16	57684304	rs139359837	G	A	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-2.793;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:123,37:0.23:160
chr16	57687314	rs2305307	T	C	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:22,97:0.82:119
chr16	57689883	rs1376041	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:22,98:0.82:120
chr16	57690082	rs151113792	A	G	1780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.01;ReadPosRankSum=2.244;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:13,76:0.85:89
chr16	57697532	rs10852554	T	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=5.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-2.713;SOR=1.180;set=HC	GT:AD:AF:DP	0/1:166,29:0.15:195
chr16	57697568	rs10852555	C	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.587;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:98,14:0.12:112
chr16	57702473	rs7205731	T	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr16	57710093	rs12596635	C	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr16	57713250	rs4238795	C	T	3727.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:48,162:0.77:210
chr16	57713536	rs4784006	G	A	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:33,117:0.78:150
chr16	57722328	rs12444859	C	T	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:35,109:0.76:144
chr16	57722576	rs11648336	T	A	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr16	57735900	rs7196016	G	C	10201.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:129,433:0.77:562
chr16	57741346	rs12933056	C	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr16	57741612	rs2122486	G	C	3832.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:45,161:0.78:206
chr16	57756643	rs3809611	C	T	4738.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:53,195:0.79:248
chr16	57758732	rs2923144	C	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.902;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:119,31:0.21:150
chr16	57762401	rs2923147	T	C	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=-1.161;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:26,82:0.76:108
chr16	57778488	rs2967152	A	G	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	57778550	rs2967153	C	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	57785138	rs9938236	C	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.601;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:230,60:0.21:290
chr16	57785813	rs34438625	T	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.672;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:79,17:0.18:96
chr16	57786517	rs2965797	C	T	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	57786711	rs2965798	C	T	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:34,111:0.77:145
chr16	57790161	rs34131744	G	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.022;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-0.128;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:291,64:0.18:355
chr16	57792688	rs71387192	G	A	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.170;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:456,111:0.20:567
chr16	57793146	rs71387193	T	C	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.358;QD=2.54;ReadPosRankSum=0.996;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:400,107:0.21:507
chr16	57793222	rs71281832	G	GC	1095.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=3.196;QD=5.03;ReadPosRankSum=-0.046;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:168,50:0.23:218
chr16	57793521	rs12929142	G	A	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.693;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:100,36:0.26:136
chr16	57793595	rs12934801	T	C	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.069;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:184,69:0.27:253
chr16	57794888	rs2965799	A	T	6825.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:81,295:0.78:376
chr16	57795394	rs2967172	G	A	9132.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:102,396:0.80:498
chr16	57797913	rs11649013	C	T	9422.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:101,405:0.80:506
chr16	57803680	rs12148935	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.301;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:129,24:0.16:153
chr16	57803911	rs3803590	A	G	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	57805048	rs2967166	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	57805078	rs2965790	C	T	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr16	57805176	rs2967165	A	G	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	57806030	rs2965789	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	57829099	rs71387196	A	C	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.440;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:143,38:0.21:181
chr16	57849373	rs74019704	A	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=6.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.948;SOR=0.076;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr16	57937773	rs137853902	C	T	3479.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:28,152:0.84:180
chr16	57937788	rs2303785	T	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-1.261;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:137,28:0.17:165
chr16	57937856	rs413562	G	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.339;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:84,14:0.14:98
chr16	57946973	rs434961	A	G	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	57949251	rs483053	G	A	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	57950057	rs376270	G	A	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	57950178	rs440565	G	C	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	57951421	rs691490	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	57952870	rs489106	A	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	57954268	rs166000	A	G	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	57957138	rs247065	G	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	57973989	rs2303779	G	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:229,87:0.28:316
chr16	57974240	rs2303778	G	A	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=3.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-1.358;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:216,74:0.26:290
chr16	57984483	rs152143	G	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	57991123	rs34759686	GC	G	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.703;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr16	57991317	rs503686	C	T	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	57992119	rs399634	T	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.445;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.341;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr16	57994724	rs2288485	C	T	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:50,138:0.73:188
chr16	57996932	rs17821448	G	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.514;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:207,56:0.21:263
chr16	57996960	rs13336595	C	T	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	57998345	rs3859043	C	T	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	58019065	rs35768173	TG	T	350.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr16	58019070	rs2304485	G	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=2.174;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr16	58019253	rs2304486	G	C	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=34.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.178;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:182,46:0.20:228
chr16	58019396	rs9934227	G	A	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.675;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:448,113:0.20:561
chr16	58021395	rs2241771	A	C	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=6.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-3.013;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:196,65:0.25:261
chr16	58030401	rs3743555	T	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.234;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:106,29:0.21:135
chr16	58030634	rs3743556	C	T	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.706;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:376,120:0.24:496
chr16	58032026	rs56347618	G	A	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.980;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:119,24:0.17:143
chr16	58036347	rs3743560	G	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.170;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:180,51:0.22:231
chr16	58053161	rs3743562	C	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.578;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr16	58072153	rs2241774	C	T	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:32,100:0.76:132
chr16	58076422	rs2118018	A	G	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:10,58:0.85:68
chr16	58079165	rs3743563	G	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,54:0.75:72
chr16	58149082	rs3817070	C	T	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,67:0.73:92
chr16	58149097	rs3817069	T	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:29,77:0.73:106
chr16	58150943	rs2270919	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr16	58163096	rs3743574	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:16,93:0.85:109
chr16	58163123	rs200899599	CGAA	C	2532.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:11,62:0.85:73
chr16	58163189	rs3743575	C	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr16	58198139	rs2279803	G	C	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:18,63:0.78:81
chr16	58200464	rs112507755	ACT	A	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=5.095;QD=1.72;ReadPosRankSum=0.223;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:215,33:0.13:248
chr16	58200617	rs58415199	A	C	7564.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:109,325:0.75:434
chr16	58208536	rs3736397	T	C	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:17,61:0.78:78
chr16	58231487	rs149021498	G	A	2002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.89;ReadPosRankSum=0.778;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:16,90:0.85:106
chr16	58231677	rs186663369	G	A	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:8,59:0.88:67
chr16	58296542	rs9923694	T	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=4.680;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	58296545	rs3815802	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	58313566	rs6499945	T	G	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.22;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	58313578	rs71155257	CT	C	665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=0.529;SOR=1.327;set=HC	GT:AD:AF:DP	0/1:13,42:0.76:55
chr16	58318604	rs3815803	T	C	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	58318721	rs11313996	AT	A	610.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr16	58320211	rs4784916	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	58327646	rs2288012	A	G	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	58429239	rs144290609	A	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.18;ReadPosRankSum=0.967;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr16	58429241	rs80236227	A	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=33.53;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr16	58498995	rs202149077	CG	C	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr16	58528736	rs371388096	T	TAA	992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.601;QD=16.55;ReadPosRankSum=0.114;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:13,47:0.78:60
chr16	58528797	.	G	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.779;QD=0.50;ReadPosRankSum=-0.778;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:164,25:0.13:189
chr16	58533932	rs982697	A	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	58537897	rs2427787	G	A	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	58538662	rs9928398	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.403;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.018;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr16	58540037	.	C	CGT	210.73	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:66,11:0.14:77
chr16	58540062	rs2550426	C	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-1.295;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:87,14:0.14:101
chr16	58544640	rs12597973	C	G	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=3.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.208;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:213,58:0.21:271
chr16	58545426	rs42945	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.240;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:185,47:0.20:232
chr16	58550300	rs77328516	A	AAC	1966.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.601;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:185,61:0.25:246
chr16	58550484	rs3743567	G	A	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.554;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.456;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:239,89:0.27:328
chr16	58552921	rs3607	G	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-1.477;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:130,35:0.21:165
chr16	58557342	rs11644694	G	A	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.507;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:124,48:0.28:172
chr16	58561954	rs37057	T	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=2.483;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr16	58562206	.	AG	A	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.059;QD=4.18;ReadPosRankSum=-0.012;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:104,25:0.19:129
chr16	58566304	rs37060	G	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-1.170;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:82,25:0.23:107
chr16	58571185	rs2244453	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-1.278;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr16	58571189	rs2243463	T	C	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.547;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr16	58573901	rs246194	G	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr16	58573946	.	C	T	42	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=19;MQ=60.0;NF=1;NR=2;PP=42;QD=25.5904041824;SC=TAGAGGTCTACTAGTATGTTT;SbPval=0.54;Source=Platypus;TC=13;TCF=3;TCR=10;TR=3;WE=58573954;WS=58573936;set=Platypus	GT:AD:AF:DP	0/1:10,3:0.23:13
chr16	58577315	rs5817153	GA	G	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.598;QD=3.38;ReadPosRankSum=-2.511;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:75,37:0.33:112
chr16	58577421	rs41260	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.676;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.051;QD=2.55;ReadPosRankSum=-1.209;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:120,29:0.19:149
chr16	58579158	rs42947	A	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.867;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr16	58579274	rs246258	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.879;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr16	58580530	rs173475	T	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=4.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.704;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:150,37:0.20:187
chr16	58594340	rs71739184	AT	A	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.083;QD=5.96;ReadPosRankSum=0.521;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr16	58610257	rs9936144	C	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr16	58614733	rs72790275	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr16	58616984	rs17854029	T	C	6653.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:56,281:0.83:337
chr16	58616997	rs34830321	C	T	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.266;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:300,60:0.17:360
chr16	58620995	rs12443835	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr16	58622596	rs34716647	TC	T	3029.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:20,84:0.81:104
chr16	58622870	rs79349898	G	A	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:25,93:0.79:118
chr16	58703878	rs200232590	CAA	C	2004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.884;QD=15.07;ReadPosRankSum=-1.524;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:53,80:0.60:133
chr16	58703966	rs9923128	A	G	4566.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:59,209:0.78:268
chr16	58704861	rs9806843	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:14,71:0.84:85
chr16	58705934	rs200662927	CAAAGG	C	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.04;ReadPosRankSum=-0.219;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr16	58705944	rs200048425	T	TC	535.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.76;ReadPosRankSum=-0.548;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr16	58705945	rs62065312	G	C	544.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.67;ReadPosRankSum=-0.654;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr16	58709824	rs146093943	TGG	T	3426.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:20,97:0.83:117
chr16	58713798	rs7191331	G	A	5282.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:66,231:0.78:297
chr16	58743454	rs30842	A	C	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	58750604	rs1058192	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	58757668	rs14221	A	C	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	58757683	rs257636	A	G	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	58767916	rs3217426	AGT	A	2963.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	58768129	rs11558171	C	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:8,41:0.84:49
chr16	60393236	rs62048716	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:13,79:0.86:92
chr16	60393404	rs2407146	T	A	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	62055217	.	G	T	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.571;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.245;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:164,59:0.26:223
chr16	64982471	rs60503515	AAAGAG	A	1201.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=65.76;MQRankSum=6.611;QD=23.11;ReadPosRankSum=1.940;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:21,31:0.60:52
chr16	64982472	.	AAGAGT	CAGAGT	1376	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=1;MMLQ=28;MQ=65.32;NF=10,18;NR=8,8;PP=1376,1376;QD=78.3888888889;SC=ATGTCTGAGAAAGAGTATTGG;SbPval=0.39;Source=Platypus;TC=27;TCF=13;TCR=14;TR=18,26;WE=64982484;WS=64982462;set=Platypus	GT:AD:AF:DP	0/1:14,26:0.65:40
chr16	64982472	.	AAGAGT	A	1376	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=1;MMLQ=28;MQ=65.32;NF=10,18;NR=8,8;PP=1376,1376;QD=78.3888888889;SC=ATGTCTGAGAAAGAGTATTGG;SbPval=0.39;Source=Platypus;TC=27;TCF=13;TCR=14;TR=18,26;WE=64982484;WS=64982462;set=Platypus	GT:AD:AF:DP	0/1:9,18:0.67:27
chr16	64982477	rs57831187	T	C	1210.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=65.87;MQRankSum=6.532;QD=23.74;ReadPosRankSum=2.384;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:20,31:0.61:51
chr16	65005395	rs3785315	T	C	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:15,70:0.82:85
chr16	65005462	rs12597529	G	A	4076.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:33,171:0.84:204
chr16	65015908	rs35214	C	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.783;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr16	65016087	rs35213	A	C	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	65016285	rs35212	C	A	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	65022114	rs28216	C	T	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.320;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:314,82:0.21:396
chr16	65022234	rs1130821	C	T	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:45,130:0.74:175
chr16	65025658	rs35196	T	C	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	65025718	rs35195	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.220;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.557;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:154,33:0.18:187
chr16	65025849	rs35194	A	G	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	65032846	rs7190608	G	A	1425.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,56:0.78:72
chr16	65038674	rs35182	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.747;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr16	65397282	rs3913028	A	G	2354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.13;ReadPosRankSum=-1.896;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:7,62:0.90:69
chr16	65397291	rs58616603	T	C	2080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.50;ReadPosRankSum=-0.776;SOR=1.743;set=HC	GT:AD:AF:DP	0/1:7,50:0.88:57
chr16	66420885	rs1130844	C	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.035;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:168,36:0.18:204
chr16	66432423	rs1049970	T	C	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-3.785;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:234,81:0.26:315
chr16	66434571	rs6499082	G	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr16	66436460	rs113672170	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.214;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr16	66437131	rs1063438	A	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-2.740;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr16	66601057	rs377761335	CT	C	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.968;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:103,36:0.26:139
chr16	66646591	rs3743719	C	T	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	66757431	.	G	A	2291.77	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:12,84:0.88:96
chr16	66757487	.	G	GT	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.025;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:93,34:0.27:127
chr16	66757728	rs77481802	GA	G	974.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.460;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.488;QD=13.00;ReadPosRankSum=1.662;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:11,64:0.85:75
chr16	66759682	rs2305311	C	A	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	66759976	rs2305310	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	66762847	rs12599882	T	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	66776657	rs4407052	G	A	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	66789125	rs11075643	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	66792714	rs363156	T	C	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	66793226	rs363157	T	C	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	66812653	rs363161	T	A	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	66812797	rs363162	C	T	13493.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr16	66839540	.	C	CA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=6.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=2.562;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr16	66842794	rs363169	A	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	66851224	rs9889170	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	66861470	rs11372346	C	CA	284.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-1.659;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr16	66861966	rs152164	G	A	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	66885652	rs151460	A	G	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	66886496	rs375038584	AAAAG	A	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.715;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=1.203;QD=8.54;ReadPosRankSum=2.102;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr16	66886505	rs369232559	GAAAAGAA	G	560.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.59;MQRankSum=0.623;QD=18.09;ReadPosRankSum=2.212;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr16	66886559	rs152168	G	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	66946255	rs147611353	C	T	9444.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:105,406:0.79:511
chr16	66946894	rs150509525	CGT	C	962.73	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:147,59:0.29:206
chr16	66951783	rs2271025	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.863;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr16	66958581	.	A	AAATAATAATAATAATAAT	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=12.382;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=6.170;QD=2.71;ReadPosRankSum=1.751;SOR=2.377;set=HC	GT:AD:AF:DP	0/1:133,25:0.16:158
chr16	66966799	rs3890213	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.361;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:110,32:0.23:142
chr16	66977979	rs11568309	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr16	66977997	rs8192925	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr16	67006838	rs3848289	G	A	1591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.842;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.535;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:359,107:0.23:466
chr16	67116032	rs36017652	G	GA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.398;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr16	67197776	rs5817616	C	CG	1010.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.32;ReadPosRankSum=-0.609;SOR=0.323;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr16	67221050	rs9924876	A	G	7382.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr16	67223003	rs138207138	G	A	4661.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:55,200:0.78:255
chr16	67229793	.	ACAGCAG	A	3870.73	.	AC=1;AF=0.500;AN=2;DP=413;set=Intersection	GT:AD:AF:DP	0/1:83,180:0.68:263
chr16	67233266	rs12923138	A	C	5811.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:53,247:0.82:300
chr16	67286352	.	C	CA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.521;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr16	67292201	rs41280898	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.635;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:90,25:0.22:115
chr16	67300016	.	TGAG	T	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-1.087;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:80,11:0.12:91
chr16	67315123	.	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.325;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr16	67315128	rs78476762	C	T	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=1.554;SOR=1.562;set=HC	GT:AD:AF:DP	0/1:21,37:0.64:58
chr16	67316600	rs7200919	G	A	6254.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:101,286:0.74:387
chr16	67324957	rs27860	T	C	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	67472376	.	GCA	G	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=3.788;QD=2.58;ReadPosRankSum=-1.393;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr16	67670472	.	GTA	G	404.73	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr16	67687983	.	CG	C	85.82	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=14.30;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	67691668	rs6979	A	G	4842.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:46,191:0.81:237
chr16	67692863	rs139438549	T	C	11103.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:162,490:0.75:652
chr16	67761200	.	C	CTAA	785.73	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr16	67861296	rs113573401	G	A	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.180;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:534,124:0.19:658
chr16	67863451	rs3743733	T	C	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr16	67876823	.	A	ACAG	6449.73	.	AC=1;AF=0.500;AN=2;DP=521;set=Intersection	GT:AD:AF:DP	0/1:121,279:0.70:400
chr16	67876851	.	C	CAGT	2527	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=28;MQ=61.05;NF=60;NR=99;PP=2527;QD=20;SC=GCAGCAGCAGCAGTCCTCACC;SbPval=0.43;Source=Platypus;TC=339;TCF=123;TCR=216;TR=159;WE=67876859;WS=67876841;set=Platypus	GT:AD:AF:DP	1/0:180,159:0.47:339
chr16	67919766	rs201170067	G	A	4781.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:46,191:0.81:237
chr16	67964978	rs199780720	T	C	4807.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:77,213:0.73:290
chr16	67965752	rs142161993	A	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:149,58:0.28:207
chr16	67979541	rs76074266	C	G	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:22,82:0.79:104
chr16	68011749	rs200562605	G	T	4483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.25;ReadPosRankSum=0.811;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:61,199:0.77:260
chr16	68025801	rs255051	G	C	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	68057096	rs237831	T	C	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	68100461	rs2285912	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:25,94:0.79:119
chr16	68155860	.	G	GT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=5.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.750;SOR=1.929;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr16	68283370	.	AG	A	2229.73	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:15,81:0.84:96
chr16	68325665	rs10525504	G	GGTGT	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-2.775;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr16	68344696	rs3803650	C	T	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.916;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:463,118:0.20:581
chr16	68344945	rs3743741	G	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.370;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chr16	68345036	rs3743742	G	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.273;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr16	68356419	rs4783618	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr16	68363181	rs1111571	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr16	68382447	rs2863975	T	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.903;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.639;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr16	68387373	rs1562479	C	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.538;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:118,30:0.20:148
chr16	68387496	rs1868159	A	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.467;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:110,26:0.19:136
chr16	68389559	rs184288195	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr16	68391189	rs7192234	C	G	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.048;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:158,45:0.22:203
chr16	68395094	rs2279539	G	A	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.512;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:116,39:0.25:155
chr16	68397530	rs3826167	T	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=6.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.808;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr16	68397909	rs1465470	A	G	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.346;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr16	68397916	rs1465469	T	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-0.116;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr16	68398924	rs1868158	C	T	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.306;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:257,80:0.24:337
chr16	68399010	rs201935525	G	A	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:23,113:0.83:136
chr16	68573761	.	C	G	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DP=517;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.131;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:416,100:0.19:516
chr16	68573945	rs1182968	C	T	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	68591156	rs1728784	T	A	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	68591230	rs1728785	A	C	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	68591350	rs1645929	A	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.977;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr16	68591386	rs11859322	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr16	68598007	rs1177648	A	G	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=1.416;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:399,89:0.18:488
chr16	68710165	rs3118229	T	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	68711999	rs1952048	A	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	68712217	rs2296410	T	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	68713730	rs2296409	G	A	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	68713823	rs2296408	C	A	9062.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr16	68716066	rs1886698	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	68716179	rs1886697	T	C	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	68718367	rs4783661	T	C	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	68718750	rs2281850	A	G	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	68721340	rs2296406	G	A	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	68721470	rs2296405	T	C	9471.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	68721533	rs1126933	G	C	10269.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr16	68725783	rs2274239	G	A	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	68729112	rs8060790	A	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:3,162:0.98:165
chr16	68729785	rs17715450	C	A	14441.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr16	68771372	rs3743674	C	T	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	68771418	rs147838237	C	CGCCCCAGCCCCGT	2316.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	68771547	rs3743675	G	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.60;QD=26.39;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	68867342	rs115817750	C	T	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:19,104:0.85:123
chr16	68900878	.	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.83;ReadPosRankSum=1.466;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	69143577	rs2232228	A	G	7510.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	69334880	rs34703750	C	CA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.149;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:85,22:0.21:107
chr16	69385426	rs72795299	G	A	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr16	69395141	.	G	GA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-1.161;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr16	69599803	rs8048032	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	69600312	.	GGGGAGACA	G	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.676;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.408;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr16	69600335	rs142292515	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.499;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr16	69687457	rs8055148	T	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr16	69704122	rs72523664	C	CTG	2087.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	69704204	rs3217435	CT	C	452.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	69711311	rs3743673	A	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr16	69745145	rs1800566	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr16	69752373	rs689453	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.116;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr16	69752464	rs689452	C	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	69873992	rs2291959	T	G	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	69876164	rs9940315	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	69905668	rs1000640	G	C	4222.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:55,185:0.77:240
chr16	69942608	rs5817677	AG	A	7523.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	69959223	rs2270838	G	A	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:41,109:0.73:150
chr16	69963355	rs1566452	G	A	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	69965024	rs2270840	A	T	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr16	69965281	rs8052727	T	G	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	69965592	rs2291961	A	G	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	69967093	rs2102066	G	A	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	69967732	rs8047818	G	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	69967897	rs2270841	T	C	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	69970000	rs2270842	T	G	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	69970329	rs1983016	A	G	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	69973127	rs2270843	A	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.707;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr16	69973622	rs10712484	GC	G	6762.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	69973655	rs4985461	C	G	8609.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	69973825	rs3748389	G	A	8617.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:107,361:0.77:468
chr16	69988373	rs2549097	T	C	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	69988472	rs75776403	C	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:11,66:0.86:77
chr16	70010458	rs3206834	G	A	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	70016416	rs3748385	T	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.047;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:98,31:0.24:129
chr16	70048199	.	A	G	59	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=28;MQ=46.51;NF=1;NR=7;PP=59;QD=11.7214015684;SC=AAGTTCAGAGATTAATTTCAG;SbPval=0.58;Source=Platypus;TC=29;TCF=3;TCR=26;TR=8;WE=70048207;WS=70048189;set=Platypus	GT:AD:AF:DP	0/1:21,8:0.28:29
chr16	70068086	rs34921671	G	C	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=1.368;QD=1.57;ReadPosRankSum=-0.309;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:118,23:0.16:141
chr16	70076912	rs58544385	GA	G	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-3.910;QD=1.69;ReadPosRankSum=1.806;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,23:0.32:71
chr16	70161263	rs2549532	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.768;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=16.018;MLEAC=1;MLEAF=0.500;MQ=55.01;MQRankSum=-8.743;QD=0.53;ReadPosRankSum=1.555;SOR=2.003;set=HC	GT:AD:AF:DP	0/1:178,23:0.11:201
chr16	70162581	rs71151174	TC	T	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=1.086;QD=3.05;ReadPosRankSum=0.301;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:77,17:0.18:94
chr16	70163691	rs4985506	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-18.790;QD=1.44;ReadPosRankSum=-0.371;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:361,70:0.16:431
chr16	70163825	rs4985403	G	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.670;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-12.233;QD=2.26;ReadPosRankSum=1.860;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:130,27:0.17:157
chr16	70164248	rs7206450	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-2.080;QD=1.65;ReadPosRankSum=1.509;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:64,12:0.16:76
chr16	70164334	rs10852462	A	G	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=4.803;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-0.416;QD=3.91;ReadPosRankSum=-1.776;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:168,55:0.25:223
chr16	70165739	rs201458502	C	T	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-19.258;QD=2.65;ReadPosRankSum=-1.994;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:371,51:0.12:422
chr16	70165746	rs202188872	C	T	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.373;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-18.889;QD=2.79;ReadPosRankSum=-1.572;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:377,58:0.13:435
chr16	70165749	rs200381305	T	C	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-18.815;QD=2.84;ReadPosRankSum=-0.658;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:381,59:0.13:440
chr16	70165914	rs2113175	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:74,37:0.33:111
chr16	70166225	rs2549550	C	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:163,76:0.32:239
chr16	70170004	rs8045700	C	A	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:4,31:0.89:35
chr16	70170016	rs8045569	A	G	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr16	70170222	rs59034887	G	T	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=1.319;QD=1.27;ReadPosRankSum=2.306;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:292,57:0.16:349
chr16	70172890	rs142218067	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.659;MLEAC=1;MLEAF=0.500;MQ=44.06;MQRankSum=0.935;QD=0.80;ReadPosRankSum=-0.154;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:95,15:0.14:110
chr16	70176076	rs2549125	G	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-8.522;QD=2.63;ReadPosRankSum=1.014;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:120,31:0.21:151
chr16	70176321	rs113493832	CT	C	984.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-2.438;QD=2.38;ReadPosRankSum=0.273;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:284,129:0.31:413
chr16	70177577	rs2303198	G	A	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.49;MQRankSum=-6.400;QD=0.93;ReadPosRankSum=-1.910;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:269,43:0.14:312
chr16	70177618	rs7191901	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:141,44:0.24:185
chr16	70177648	rs2303200	G	A	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:20,112:0.85:132
chr16	70180088	rs200566106	A	T	6502.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:72,280:0.80:352
chr16	70181537	rs145995386	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-4.003;QD=1.00;ReadPosRankSum=0.067;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:81,15:0.16:96
chr16	70182325	rs55843501	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.994;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.356;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-9.610;QD=2.96;ReadPosRankSum=-0.817;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:111,26:0.19:137
chr16	70182375	rs62050977	T	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-1.583;QD=1.93;ReadPosRankSum=-3.052;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:201,26:0.11:227
chr16	70182390	rs62050978	T	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-1.635;QD=2.16;ReadPosRankSum=-0.662;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:206,29:0.12:235
chr16	70182489	rs145754705	ACTTCCCTTCC	A	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.858;QD=8.48;ReadPosRankSum=-0.047;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr16	70187164	rs2287979	G	A	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr16	70187270	rs2287980	T	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=4.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.10;ReadPosRankSum=0.181;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:312,43:0.12:355
chr16	70190401	rs6499302	C	T	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=3.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-2.126;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:139,64:0.32:203
chr16	70191029	rs4985509	T	G	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-2.179;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:253,84:0.25:337
chr16	70191161	rs11647087	C	T	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.356;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.583;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr16	70219659	rs371530724	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.466;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=13.778;MLEAC=1;MLEAF=0.500;MQ=41.63;MQRankSum=-1.484;QD=8.69;ReadPosRankSum=-0.051;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	70219777	.	A	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.140;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=25.737;MLEAC=1;MLEAF=0.500;MQ=49.68;MQRankSum=-7.430;QD=4.46;ReadPosRankSum=-0.037;SOR=2.836;set=HC	GT:AD:AF:DP	0/1:100,30:0.23:130
chr16	70219914	rs200703987	T	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr16	70287177	rs4081753	A	G	10405.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr16	70292798	rs34846578	CAG	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.000;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr16	70299692	rs72289034	TGCCCATCAGAAAATCCA	T	364.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	70303337	.	G	A	575.56	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr16	70303580	rs2070203	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=5.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.124;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:185,53:0.22:238
chr16	70323641	.	A	AC	300.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;MQRankSum=0.000;QD=21.50;ReadPosRankSum=1.742;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr16	70350114	.	G	GT	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.944;QD=3.14;ReadPosRankSum=-1.454;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:66,30:0.31:96
chr16	70359664	rs139391794	A	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr16	70384687	rs66588480	CTTAAAA	C	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,6:0.18:33
chr16	70395387	rs1134074	C	T	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.083;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:253,55:0.18:308
chr16	70400857	rs8058224	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr16	70422231	rs4985526	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr16	70502610	rs12446395	C	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr16	70506907	rs7192865	T	C	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=1.881;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:179,49:0.21:228
chr16	70513384	rs11075764	C	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:17,60:0.78:77
chr16	70515355	rs11054	C	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.898;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:178,45:0.20:223
chr16	70515600	rs6416698	T	G	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	70515915	rs11645572	A	C	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:20,67:0.77:87
chr16	70516109	rs12447090	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=7.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=1.830;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:175,46:0.21:221
chr16	70530359	rs2303793	A	G	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:12,72:0.86:84
chr16	70531366	rs2303792	C	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr16	70531754	rs2303791	T	G	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr16	70546234	rs3762171	G	A	2080.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.305;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.45;ReadPosRankSum=1.108;SOR=0.581;set=HC	GT:AD:AF:DP	1/1:9,88:0.91:97
chr16	70548297	rs3931036	G	A	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	70553382	rs7204583	G	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr16	70560361	rs8051506	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr16	70566260	.	C	CAAAAAAA	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.687;QD=9.84;ReadPosRankSum=-0.429;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr16	70569215	rs33910368	A	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:26,75:0.74:101
chr16	70575852	rs11645437	A	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr16	70601254	rs7197262	G	A	940.94	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr16	70602221	rs12909	C	T	3626.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:42,157:0.79:199
chr16	70603220	rs4985534	T	C	288.89	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr16	70680744	rs3813904	G	C	790.80	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:4,28:0.88:32
chr16	70690989	rs8046424	G	C	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:23,72:0.76:95
chr16	70693872	rs3214847	C	CT	1850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.697;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:66,112:0.63:178
chr16	70708093	rs67662127	CAGTCTCAACAGCTATAGT	C	169.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr16	70726795	rs2278983	C	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-2.218;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:93,19:0.17:112
chr16	70726940	rs2278984	G	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.429;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr16	70732483	rs7201952	G	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.929;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr16	70732761	rs9673700	G	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr16	70796515	rs2305689	G	A	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	70796535	rs2305690	C	T	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	70815838	rs146617185	G	A	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-2.590;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:137,36:0.21:173
chr16	70816893	rs1875941	C	T	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	70818557	rs72792880	A	G	477.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.75;ReadPosRankSum=1.379;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr16	70818759	rs2271047	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	70891790	rs138762682	G	A	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	70917705	rs138545276	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-1.981;QD=4.86;ReadPosRankSum=-0.040;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr16	70935224	rs75445533	A	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	70954915	rs1798531	G	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.40;QD=31.61;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	70972595	rs79004160	T	C	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.24;QD=26.12;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	70972784	rs1615602	A	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	70972795	.	G	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.62;MQRankSum=-1.290;QD=20.62;ReadPosRankSum=0.834;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr16	71004602	.	G	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=49.55;MQRankSum=1.267;QD=2.47;ReadPosRankSum=0.169;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr16	71025394	rs149427312	C	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.014;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=14.914;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-3.743;QD=3.65;ReadPosRankSum=1.602;SOR=0.102;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr16	71100838	rs74361942	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr16	71103114	.	A	G	248	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=27;MQ=40.76;NF=12;NR=0;PP=248;QD=23.5642677123;SC=AGGGCCCATGACTATTTTGAA;SbPval=1.0;Source=Platypus;TC=26;TCF=23;TCR=3;TR=12;WE=71103122;WS=71103104;set=Platypus	GT:AD:AF:DP	0/1:14,12:0.46:26
chr16	71103148	rs75792522	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr16	71109662	rs141412506	C	G	165.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.29;MQRankSum=-1.068;QD=23.58;ReadPosRankSum=-0.792;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	71163693	rs150028416	A	G	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr16	71212979	rs2158102	T	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr16	71218926	rs3785347	T	A	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,46:0.75:61
chr16	71219021	rs3785346	C	T	418.89	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr16	71220880	rs12927616	T	C	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr16	71237587	rs1895528	T	C	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=0.155;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:18,50:0.74:68
chr16	71237702	rs764600	C	T	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr16	71264399	rs3743954	G	C	6277.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:55,257:0.82:312
chr16	71264523	rs12449210	T	A	12049.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:153,522:0.77:675
chr16	71264561	rs3743953	A	G	8997.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:119,385:0.76:504
chr16	71318577	rs3803704	T	C	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:30,107:0.78:137
chr16	71319539	rs3826247	C	T	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	71319646	rs3096380	G	A	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	71319900	rs9928675	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr16	71406024	rs7203012	C	T	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:41,131:0.76:172
chr16	71406249	rs8061026	A	T	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr16	71408475	rs12444419	T	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr16	71408527	rs8046337	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.085;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr16	71411446	rs12445308	G	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.81;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	71416431	rs12919213	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	71417763	rs12597011	A	G	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:31,104:0.77:135
chr16	71418291	rs41280904	T	C	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.025;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:227,66:0.23:293
chr16	71418586	.	ACATG	A	566	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=3;MGOF=8;MMLQ=28;MQ=50.44;NF=6;NR=1;PP=566;QD=84.5714285714;SC=CACACATCACACATGCACACA;SbPval=0.91;Source=Platypus;TC=10;TCF=7;TCR=3;TR=7;WE=71418597;WS=71418563;set=Platypus	GT:AD:AF:DP	0/1:3,7:0.70:10
chr16	71419595	rs4327058	A	G	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	71466088	rs4620964	A	G	18286.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:2,684:1.00:686
chr16	71483931	rs730470	G	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	71487206	rs2070832	T	C	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	71487952	rs11641967	G	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.414;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:167,46:0.22:213
chr16	71509588	rs2288487	G	A	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	71509634	rs2288488	G	C	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	71509685	rs2288489	C	G	5903.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	71509796	rs8050871	C	G	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	71509976	rs147578256	C	T	3705.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:55,147:0.73:202
chr16	71603912	rs172650	C	A	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	71604469	rs2303226	A	G	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:24,74:0.76:98
chr16	71606716	rs72797767	A	C	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr16	71607384	rs2432520	T	G	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	71660115	rs4788820	G	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr16	71668800	rs7206470	G	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr16	71678679	rs7204608	G	C	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:29,74:0.72:103
chr16	71682796	rs61733125	T	C	696.41	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr16	71687002	.	CTT	C,CT	699.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=7.776;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.982;QD=11.66;ReadPosRankSum=0.660;SOR=2.038;set=HC	GT:AD:AF:DP	1/2:12,28,20:0.47,0.33:60
chr16	71690657	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.371;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr16	71701248	rs1423983	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr16	71703436	rs2032918	T	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:16,56:0.78:72
chr16	71710428	rs61733123	G	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:42,135:0.76:177
chr16	71712786	rs61733126	A	G	4780.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:51,198:0.80:249
chr16	71715915	rs11439127	G	GA	95.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.64;ReadPosRankSum=0.792;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	71718366	rs7195059	C	T	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:17,77:0.82:94
chr16	71718538	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.143;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr16	71748319	rs145529088	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.98;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr16	71757939	rs7201649	C	G	130.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr16	71772795	rs904764	G	A	1723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.02;ReadPosRankSum=-0.173;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:14,68:0.83:82
chr16	71773190	rs904763	G	T	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:27,76:0.74:103
chr16	71784000	rs2270829	A	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr16	71790166	rs8053186	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr16	71792190	rs11866559	G	A	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:6,40:0.87:46
chr16	71799347	rs12149092	A	G	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr16	71801958	rs7192956	T	C	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:18,56:0.76:74
chr16	71804956	rs9635524	C	G	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:51,132:0.72:183
chr16	71805160	rs4788443	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr16	71841850	rs117193414	T	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-2.782;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:108,27:0.20:135
chr16	71879868	rs4788563	A	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr16	71917058	rs2288029	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:25,65:0.72:90
chr16	71928850	rs11075908	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr16	71950450	rs1049794	C	T	911.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=0.389;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:5,39:0.89:44
chr16	71955400	rs4788450	T	G	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:16,67:0.81:83
chr16	71955426	rs56089063	C	CAT	1925.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:12,49:0.80:61
chr16	71956511	rs148848854	AATGCCC	A	19312.73	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:179,485:0.73:664
chr16	71956588	rs77712195	GTATA	G	14677.73	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:105,359:0.77:464
chr16	71961389	rs61334905	C	CA	222.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.064;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr16	71967886	rs147505098	G	A	7405.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:83,317:0.79:400
chr16	71977788	rs142428438	T	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.585;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.167;SOR=0.147;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr16	71981414	rs149635567	C	CTTTG	2953.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:25,72:0.74:97
chr16	71981630	rs9934803	T	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr16	71981652	rs9934812	T	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr16	71983664	rs1549292	T	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr16	71986764	rs11648353	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.26;ReadPosRankSum=-1.396;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr16	71986946	rs7204708	A	G	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:27,92:0.77:119
chr16	71986995	rs12708919	G	A	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.57;ReadPosRankSum=2.027;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:21,81:0.79:102
chr16	71987960	rs9888745	A	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr16	71988106	rs9921412	C	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:15,68:0.82:83
chr16	72001110	rs9928413	G	A	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:34,113:0.77:147
chr16	72001629	rs12708922	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr16	72001971	rs9930930	A	G	843.78	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,34:0.89:38
chr16	72003732	rs28629271	C	T	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:24,84:0.78:108
chr16	72003952	rs35259348	G	C	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:21,90:0.81:111
chr16	72011040	rs3929023	A	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,45:0.71:63
chr16	72011181	rs1559401	G	T	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:29,121:0.81:150
chr16	72011193	rs1559400	A	C	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:28,127:0.82:155
chr16	72011261	rs1559399	A	G	3417.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:40,149:0.79:189
chr16	72011450	rs1559398	G	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.64;ReadPosRankSum=1.086;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr16	72011456	rs139541803	G	GGTCTTC	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.31;ReadPosRankSum=0.538;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr16	72012072	rs8053841	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr16	72012368	rs201075633	G	GTA	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.34;ReadPosRankSum=1.029;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	72012374	.	A	ATATGTGTGTG	317	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=4;MGOF=34;MMLQ=21;MQ=59.67;NF=0;NR=11;PP=317;QD=29.3636363636;SC=ATATGTATATATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=36;TCF=0;TCR=36;TR=11;WE=72012384;WS=72012358;set=Platypus	GT:AD:AF:DP	0/1:25,11:0.31:36
chr16	72012396	rs2113217	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.95;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	72012398	rs2878405	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.95;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	72012400	rs62053844	A	G	222.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.83;ReadPosRankSum=-1.465;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	72012402	rs62053845	A	G	221.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.68;ReadPosRankSum=-1.465;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	72012413	.	TATATATAC	T	110.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.15;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	72012415	.	TATATAC	T	1540	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=2;MGOF=29;MMLQ=22;MQ=60.0;NF=0;NR=12;PP=1540;QD=128.666666667;SC=TATATATATATATATACATAC;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=12;WE=72012428;WS=72012386;set=Platypus	GT:AD:AF:DP	0/1:1,12:0.92:13
chr16	72013797	rs7185272	G	C	5999.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:71,250:0.78:321
chr16	72018099	rs12443563	C	T	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr16	72020294	rs4788590	G	A	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:27,97:0.78:124
chr16	72020323	rs4788591	A	G	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chr16	72027319	rs141893694	TAATC	T	1404.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr16	72032231	rs16973585	T	A	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,85:0.67:126
chr16	72042682	rs3213422	A	C	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=-0.616;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:13,56:0.81:69
chr16	72042825	rs3213423	T	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr16	72046268	rs1465457	C	G	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:7,45:0.87:52
chr16	72048332	rs3764310	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr16	72048632	rs8062895	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	72050885	rs11075914	G	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	72089958	rs148260617	ATG	A	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.848;QD=0.82;ReadPosRankSum=0.760;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:71,14:0.16:85
chr16	72139396	rs150617	T	C	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:34,87:0.72:121
chr16	72139537	rs42544	T	C	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	72822099	.	G	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.294;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.831;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:111,24:0.18:135
chr16	72827758	rs699444	T	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	72832135	rs740178	T	A	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	72984342	rs78266764	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr16	72984668	rs2228200	C	T	1745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.400;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:408,123:0.23:531
chr16	72991286	rs2157786	C	T	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-0.740;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:60,37:0.38:97
chr16	72991660	rs10852515	C	G	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.612;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:141,55:0.28:196
chr16	72991715	rs4788682	A	G	888.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=9.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-1.668;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:143,55:0.28:198
chr16	72992269	rs11075951	G	A	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.656;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:210,58:0.22:268
chr16	73126858	rs7189194	T	G	6371.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	73177898	rs76098878	A	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr16	73517248	rs1991048	G	C	971.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.764;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.521;QD=37.35;ReadPosRankSum=1.060;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr16	73517250	rs147828241	A	AAG	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.677;QD=25.18;ReadPosRankSum=0.137;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:4,23:0.85:27
chr16	73521307	rs35394633	A	ATT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-0.296;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr16	74333380	rs889641	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	74334967	.	G	A	321.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,22:0.27:82
chr16	74335204	rs17336700	T	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr16	74368661	rs376725405	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-0.344;QD=1.06;ReadPosRankSum=-2.729;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:82,15:0.15:97
chr16	74372302	rs2549259	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.036;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-12.811;QD=1.09;ReadPosRankSum=0.546;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:156,26:0.14:182
chr16	74372914	rs11353924	GT	G	206.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.455;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr16	74384296	rs11859725	C	T	5322.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:59,223:0.79:282
chr16	74384319	rs113276760	G	GT	6358.73	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:44,190:0.81:234
chr16	74384477	rs28550604	T	A	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-5.562;QD=3.07;ReadPosRankSum=1.463;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:183,55:0.23:238
chr16	74386002	rs148921572	A	G	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	74394671	rs62055171	T	C	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=10.029;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-8.200;QD=2.05;ReadPosRankSum=-1.616;SOR=1.415;set=HC	GT:AD:AF:DP	0/1:199,47:0.19:246
chr16	74425358	rs6564065	G	A	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:77,86:0.53:163
chr16	74425548	rs2868591	A	G	7650.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:160,272:0.63:432
chr16	74425569	rs11641596	C	T	1548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.998;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=7.056;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.306;QD=3.95;ReadPosRankSum=-0.337;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:294,98:0.25:392
chr16	74443401	.	T	C	934.77	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.20;QD=32.23;SOR=6.804;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	74447514	rs2650549	T	C	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:173,60:0.26:233
chr16	74452071	rs372741573	G	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.57;MQRankSum=-3.748;QD=5.19;ReadPosRankSum=1.435;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr16	74485788	rs3851731	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.510;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr16	74490529	rs3760055	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=2.558;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:106,22:0.17:128
chr16	74490789	rs12446054	G	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr16	74491733	rs2288054	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.291;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr16	74493530	.	G	GA	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.501;QD=2.21;ReadPosRankSum=-0.822;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr16	74493752	rs71158515	C	CT	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.519;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:29,49:0.63:78
chr16	74499589	rs2303275	G	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:13,48:0.79:61
chr16	74501856	rs6564117	C	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.339;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr16	74501924	rs61278296	G	A	749.78	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr16	74503031	rs2303277	G	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:32,91:0.74:123
chr16	74503860	rs2303278	T	A	5218.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:73,219:0.75:292
chr16	74504005	rs2303279	T	C	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	74504052	rs3217262	C	CTCT	2869.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:22,72:0.77:94
chr16	74504097	rs12716764	G	C	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	74504985	rs35209570	A	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr16	74516796	rs75124206	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.506;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.575;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr16	74530611	rs34221253	T	TACAC	476.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=28.04;ReadPosRankSum=-0.965;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr16	74566092	rs202047611	ATAT	A	298.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.261;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr16	74709207	rs117203179	G	A	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr16	74709610	rs34389205	G	A	5543.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:91,245:0.73:336
chr16	74750405	rs2301865	G	A	6308.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	74750440	rs199815871	C	T	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:44,143:0.76:187
chr16	74760292	rs11295057	CT	C	382.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr16	74808425	rs929881	G	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr16	74908439	rs2870148	C	T	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	74920075	.	C	CAA	152	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=13;HapScore=3;MGOF=61;MMLQ=20;MQ=55.65;NF=1;NR=2;PP=152;QD=52.3333333333;SC=ATTCTGTGTCCAAAAAAAAAA;SbPval=0.18;Source=Platypus;TC=19;TCF=14;TCR=5;TR=3;WE=74920083;WS=74920065;set=Platypus	GT:AD:AF:DP	1/0:16,3:0.16:19
chr16	74920090	rs9936830	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr16	74920191	rs14308	G	A	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,61:0.75:81
chr16	74920374	rs4888305	C	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	74921661	rs9940014	A	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr16	74922015	rs35324656	CA	C	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.885;QD=6.69;ReadPosRankSum=-0.315;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:12,31:0.72:43
chr16	74926520	rs11149776	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:14,60:0.81:74
chr16	74927507	.	CAA	C	2717.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=9.953;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.924;QD=20.43;ReadPosRankSum=1.163;SOR=0.108;set=HC	GT:AD:AF:DP	0/1:29,104:0.78:133
chr16	74937828	rs9930270	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	74938083	rs9930498	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	74943867	rs113238843	G	GT	421.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.551;QD=10.04;ReadPosRankSum=0.753;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr16	74943890	rs12325318	A	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	74951706	.	C	CAA	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.883;QD=6.55;ReadPosRankSum=1.739;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr16	74999522	rs72798674	T	A	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:21,75:0.78:96
chr16	75034133	rs6564195	A	G	7200.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	75034214	rs34462287	C	A	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr16	75034407	.	G	C	1178.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr16	75138927	rs2287989	A	G	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	75146711	rs34195333	C	G	7899.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr16	75148604	rs755099	G	A	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	75150673	.	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=7.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-1.925;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:138,25:0.15:163
chr16	75186727	rs11859007	G	A	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	75200378	rs9929570	T	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	75200407	rs11865310	G	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	75200416	rs7200789	T	C	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	75202998	rs12716783	A	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	75238103	rs4737	C	T	7103.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	75240883	rs72802352	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr16	75252820	rs68181471	AGC	A	333.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr16	75256738	.	C	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-1.881;QD=2.21;ReadPosRankSum=1.352;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr16	75258617	rs2287990	C	T	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:33,129:0.80:162
chr16	75263661	rs7190458	G	A	5234.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:75,219:0.74:294
chr16	75263974	rs6564241	T	C	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	75267676	rs4888361	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	75269267	rs3169330	A	G	8682.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	75269534	rs3743613	C	T	8055.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:83,346:0.81:429
chr16	75269958	rs10623347	C	CCA	978.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr16	75270721	rs2278020	C	A	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:25,87:0.78:112
chr16	75276295	rs7195938	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	75276775	rs1035539	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr16	75277344	rs4888363	A	T	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	75277446	rs76709948	AAGAC	A	1768.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr16	75277480	rs4887810	C	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr16	75281964	rs1862737	A	C	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.114;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:168,64:0.28:232
chr16	75285164	rs1862738	A	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	75300708	rs11149811	C	G	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	75301605	rs9319482	A	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	75301974	rs72804106	G	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.75;ReadPosRankSum=-0.126;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	75327916	rs6624	A	G	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.598;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:255,59:0.19:314
chr16	75338855	rs3743607	C	T	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-1.463;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:145,50:0.26:195
chr16	75339131	rs7192981	T	G	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	75445605	rs1109341	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.776;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr16	75445675	rs1109342	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.507;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr16	75445906	rs247435	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	75448659	rs8051407	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.141;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr16	75467063	rs185052	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr16	75467076	rs3833048	G	GC	141.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr16	75498252	rs150429885	C	CT	699.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.152;QD=4.66;ReadPosRankSum=-1.283;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:123,27:0.18:150
chr16	75498253	rs34904236	G	T	708.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.767;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:125,26:0.17:151
chr16	75498320	rs37596	C	A	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:27,105:0.80:132
chr16	75512959	rs146465655	G	A	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.260;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:191,48:0.20:239
chr16	75513467	.	G	A	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.084;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:269,62:0.19:331
chr16	75579242	rs144252983	G	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-2.478;QD=1.48;ReadPosRankSum=-1.451;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr16	75652407	.	C	CA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.575;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=5.094;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=3.845;QD=2.30;ReadPosRankSum=0.160;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:73,32:0.30:105
chr16	75670529	rs57060791	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.842;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr16	75688046	.	TAA	T	126.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;MQRankSum=0.319;QD=10.56;ReadPosRankSum=-0.259;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,9:0.75:12
chr16	75703213	rs199883674	T	TA	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.878;QD=7.48;ReadPosRankSum=0.645;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr16	75728506	rs143310087	C	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr16	75730037	rs5817959	T	TA	3377.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:23,97:0.81:120
chr16	75794738	rs7205764	T	C	2612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.33;ReadPosRankSum=0.235;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:44,116:0.72:160
chr16	76311602	rs59314262	G	GT	5899.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	76482546	rs56137120	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	76482910	rs3947083	G	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	76496025	rs57292037	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	76496131	rs34782687	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	76523792	rs7201030	A	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	76532583	rs12933808	A	G	4539.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:62,201:0.76:263
chr16	76555015	rs11353699	CT	C	3302.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.45;ReadPosRankSum=0.593;SOR=0.591;set=HC	GT:AD:AF:DP	1/1:11,168:0.94:179
chr16	76569754	rs6564348	A	T	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	76574500	rs72799059	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	76574842	rs72799060	T	A	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	76587647	rs4243123	G	C	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	76592633	rs12599021	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	76902722	rs34106659	C	G	675.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.48;ReadPosRankSum=0.605;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:3,30:0.91:33
chr16	76902847	rs7500280	T	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=-0.476;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr16	76902850	rs7499278	G	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.42;ReadPosRankSum=-0.377;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr16	77225217	rs3214483	A	AG	2248.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	77228629	rs2232503	A	G	11001.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr16	77228866	rs2232504	T	C	8692.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr16	77233394	rs4888607	A	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	77240217	rs9928151	G	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,27:0.84:32
chr16	77242035	rs9933799	G	A	523.89	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr16	77242083	rs9934426	C	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	77242284	rs1424146	G	A	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	77242513	rs2343035	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr16	77245971	rs9924848	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=0.518;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr16	77246218	rs13331769	G	A	312.81	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr16	77246795	rs2278049	C	G	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:61,180:0.75:241
chr16	77246847	rs2278048	T	G	5674.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:87,249:0.74:336
chr16	77246953	rs2278047	G	C	3860.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:65,168:0.72:233
chr16	77246988	rs7203616	T	G	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	77281779	rs35625788	GTC	G	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	77327226	rs4888618	C	A	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	77375703	rs113693298	TA	T	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.853;QD=1.92;ReadPosRankSum=-2.307;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:79,23:0.23:102
chr16	77389956	rs8059275	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-2.399;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:135,29:0.18:164
chr16	77393207	rs2650907	G	C	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.836;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:110,35:0.24:145
chr16	77393445	rs72406902	GGAAA	G	212.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr16	77393450	rs114891228	A	C	221.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.738;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.239;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr16	77395948	rs1909802	C	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr16	77397899	rs1948718	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr16	77398081	rs1948719	T	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.265;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:124,50:0.29:174
chr16	77398386	rs2562119	A	T	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr16	77401684	rs2434895	T	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr16	77465036	rs1366545	C	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr16	77769369	rs308926	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	77769647	rs186305	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	77775459	rs11648791	G	A	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	77918801	rs1864228	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr16	78062159	rs2075738	C	T	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:27,95:0.78:122
chr16	78062190	rs2735403	T	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	78062219	rs2204891	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	78063000	rs7197560	T	C	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:20,54:0.73:74
chr16	78063064	rs7190832	G	T	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr16	78063143	rs7192416	C	T	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	78085722	rs35713571	A	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:43,13:0.23:56
chr16	78085754	rs2344923	C	A	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	78142209	rs4887937	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	78143607	rs2287972	C	T	2607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.37;ReadPosRankSum=-1.812;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,108:0.84:128
chr16	78148794	rs1469117	T	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	78148830	rs12934051	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.281;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.508;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:42,6:0.12:48
chr16	78149067	rs12934985	A	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.334;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:118,42:0.26:160
chr16	78149173	rs7203387	A	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr16	78198192	rs2303191	T	C	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	78198236	rs2303190	G	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.389;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:141,35:0.20:176
chr16	78420775	rs11545029	G	A	3712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=5.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=-0.039;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:45,164:0.78:209
chr16	78790765	rs7199110	C	T	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	79245465	rs384216	T	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr16	79245820	rs383362	G	T	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:27,87:0.76:114
chr16	79245956	rs2288034	C	G	2533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=0.052;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:30,63:0.68:93
chr16	79245961	rs2288033	T	C	2503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.64;ReadPosRankSum=-0.276;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:30,64:0.68:94
chr16	79619727	rs60080524	GAAA	G	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=36.46;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	79628536	rs66467731	AT	A	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.059;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.802;QD=9.02;ReadPosRankSum=0.293;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:14,29:0.67:43
chr16	79633805	rs5818251	TGCC	T	4138.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	79998075	rs66539665	T	G	3349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=-1.502;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:43,145:0.77:188
chr16	80574886	rs9922406	T	C	7206.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	80577098	rs8049769	G	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	80581547	rs6564762	C	T	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	80581580	rs6564763	A	C	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	80581631	rs6564764	G	A	8040.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	80641906	rs9940301	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-1.665;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:85,15:0.15:100
chr16	80641931	rs9933302	T	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-2.093;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:100,23:0.19:123
chr16	80641936	rs9940376	G	C	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-1.929;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:109,26:0.19:135
chr16	80646761	rs111829728	C	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr16	80654633	rs4889169	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.561;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:120,36:0.23:156
chr16	80666886	rs59675671	T	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr16	80704886	rs7195952	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.446;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr16	80718879	rs8049284	A	G	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	80719086	rs8047798	G	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	81010073	rs1127390	C	T	1081.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=-0.967;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:6,48:0.89:54
chr16	81012303	rs9937731	C	A	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=-0.020;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:14,51:0.78:65
chr16	81014684	rs35505789	C	CA	34.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.96;ReadPosRankSum=-0.180;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr16	81025372	rs2244452	A	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.678;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.268;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr16	81025490	rs2113196	A	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.351;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:168,47:0.22:215
chr16	81025506	rs2113197	T	A	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.604;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:184,51:0.22:235
chr16	81050817	rs9889194	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr16	81050965	rs935939	A	T	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	81051203	rs11866803	T	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr16	81051327	rs935940	C	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	81053682	rs10602593	CT	C	371.50	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:4,24:0.86:28
chr16	81056111	rs9921914	C	A	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,68:0.71:96
chr16	81058170	rs112620608	T	TCAACTCAGC	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=33.35;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	81060124	rs11150336	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,47:0.81:58
chr16	81060197	rs184140976	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=7.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.661;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr16	81061827	rs2549887	G	A	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.707;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:114,38:0.25:152
chr16	81062030	rs2549888	G	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.225;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.834;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr16	81062151	rs35608064	CTT	C	2056.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.879;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.222;QD=10.66;ReadPosRankSum=0.106;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:130,63:0.33:193
chr16	81062157	rs114305409	T	C	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.721;QD=8.46;ReadPosRankSum=0.148;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:158,54:0.25:212
chr16	81062171	rs2602428	C	T	1864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.781;QD=7.04;ReadPosRankSum=1.165;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:201,64:0.24:265
chr16	81069449	rs2602430	A	G	164.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.60;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	81077915	rs2257378	T	C	10241.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr16	81094760	rs804884	A	G	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	81095363	rs804885	C	T	7826.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	81118289	rs7187102	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	81121145	rs7200400	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	81129822	rs8052579	G	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	81142257	rs1869348	T	C	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:57,196:0.77:253
chr16	81142358	rs4520846	C	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr16	81145630	rs8053975	C	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	81145664	rs8054611	A	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	81145675	rs8059153	T	C	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	81145737	rs8059318	T	G	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	81145755	rs11647962	A	T	4090.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:55,181:0.77:236
chr16	81145807	rs8054182	C	G	7164.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	81151122	rs4889238	A	C	14140.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr16	81151163	rs8053191	C	T	7404.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:68,314:0.82:382
chr16	81157324	rs4889241	G	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	81157385	rs8050204	G	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr16	81157521	rs4889242	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.146;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr16	81157577	rs76970623	T	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr16	81161473	rs145602984	G	GTACTGCCAAGCCTGGGGAAAGC	7143.73	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:86,148:0.63:234
chr16	81161552	rs16954717	C	T	5801.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:114,254:0.69:368
chr16	81161569	rs75417926	T	G	10233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.914;QD=28.75;ReadPosRankSum=-0.312;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:104,252:0.71:356
chr16	81161571	rs80097269	T	C	10252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.920;QD=28.80;ReadPosRankSum=0.038;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:105,251:0.71:356
chr16	81161578	rs7206183	G	A	9828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.917;QD=28.82;ReadPosRankSum=0.118;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:100,241:0.71:341
chr16	81161608	rs16954722	T	C	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:84,224:0.73:308
chr16	81161712	rs113658800	TA	T	3047.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:25,76:0.75:101
chr16	81161722	rs71183779	A	C	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:22,75:0.77:97
chr16	81161737	rs2084959	C	T	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:14,51:0.78:65
chr16	81161764	rs16954729	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr16	81164274	rs11150345	C	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	81164289	rs34186266	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	81167314	rs3826050	G	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr16	81167342	rs11150346	T	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	81171205	rs76104221	G	C	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:32,166:0.84:198
chr16	81173030	rs4889243	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	81173136	rs12918619	T	C	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	81173193	rs4889244	C	T	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.454;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:107,34:0.24:141
chr16	81180988	rs7194136	C	G	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:34,159:0.82:193
chr16	81183266	rs8044870	A	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	81185326	rs11649028	G	A	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	81185416	rs8061038	A	G	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	81190294	rs4889251	G	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	81190308	rs4889252	G	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	81190328	rs4889253	G	A	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	81190601	rs1453325	T	C	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	81190613	rs1453324	A	G	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	81190708	rs1453323	A	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	81193433	rs734823	G	C	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	81194382	rs2317117	T	C	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	81197117	rs4889255	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	81198441	rs7191852	T	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	81208056	rs745209	A	G	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	81208266	.	C	G	7165.77	.	AC=1;AF=0.500;AN=2;DP=398;set=Intersection	GT:AD:AF:DP	0/1:91,306:0.77:397
chr16	81211496	rs9935113	C	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.177;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:104,24:0.19:128
chr16	81211548	rs9934605	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.276;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.026;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:137,27:0.16:164
chr16	81213081	rs4889259	G	A	516.28	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr16	81213142	rs4889260	C	T	1936.10	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:8,76:0.90:84
chr16	81213378	rs4889261	A	G	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:22,139:0.86:161
chr16	81213422	rs4889262	C	T	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:13,77:0.86:90
chr16	81219187	rs13339342	C	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=6.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.826;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:131,38:0.22:169
chr16	81219329	rs9319563	G	T	9549.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr16	81219396	rs9674042	T	A	3550.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:29,149:0.84:178
chr16	81222672	rs4889271	T	C	689.78	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr16	81224234	rs12716909	T	C	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:17,49:0.74:66
chr16	81224423	rs11647179	G	A	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	81224495	rs72823811	G	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr16	81228814	rs72823822	G	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.372;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr16	81232275	rs7205673	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr16	81232564	rs7194871	T	G	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:86,150:0.64:236
chr16	81232743	rs9924038	G	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:74,31:0.30:105
chr16	81240931	rs11150368	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr16	81241098	rs11150369	C	T	3718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.05;ReadPosRankSum=0.682;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:35,93:0.73:128
chr16	81241100	rs11150370	G	C	3718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.05;ReadPosRankSum=1.037;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:35,93:0.73:128
chr16	81242085	rs7499175	C	T	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-2.241;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:108,33:0.23:141
chr16	81242102	rs6420424	G	A	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:36,121:0.77:157
chr16	81242148	rs55980345	GTT	G	4261.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:33,105:0.76:138
chr16	81242151	rs5818326	T	C	4270.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:33,105:0.76:138
chr16	81242194	rs6564838	T	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:30,84:0.74:114
chr16	81242366	rs6564839	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr16	81242386	rs6564840	T	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	81248716	rs12933806	C	T	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:27,78:0.74:105
chr16	81248935	rs8044334	T	G	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,55:0.83:66
chr16	81249954	rs7191351	T	A	3171.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:43,139:0.76:182
chr16	81253526	rs141224532	A	ATTATT	628.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr16	81253637	rs9924275	A	G	3892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.868;QD=31.39;ReadPosRankSum=1.839;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:33,91:0.73:124
chr16	81253642	rs62052455	AG	TC	4138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.857;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.820;QD=30.66;ReadPosRankSum=0.242;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:33,102:0.76:135
chr16	81253745	rs9934272	C	G	4419.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:65,190:0.75:255
chr16	81253759	rs9924371	A	G	4526.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:71,195:0.73:266
chr16	81253917	rs9924530	A	G	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:33,129:0.80:162
chr16	81254023	rs35807120	T	TA	1092.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr16	81295780	rs35683292	C	A	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:53,132:0.71:185
chr16	81314381	rs7188650	T	C	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr16	81320830	rs8048342	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	81396287	rs12448327	C	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=7.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.543;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:205,52:0.20:257
chr16	81398520	rs4889313	G	A	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:43,111:0.72:154
chr16	81398635	rs2608555	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.511;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:82,23:0.22:105
chr16	81528953	rs17777059	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	81641452	rs7203914	A	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	81679151	rs4889356	A	G	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.572;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:325,87:0.21:412
chr16	81694336	rs66465921	C	CT	1885.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=7.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.98;ReadPosRankSum=0.905;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:19,99:0.84:118
chr16	81703861	rs11150398	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	81704033	rs8044418	C	G	87.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.56;ReadPosRankSum=-0.842;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	81712240	rs74910737	G	GC	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.919;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr16	81726584	rs11642818	A	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.079;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr16	81726863	rs2288011	C	G	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=4.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=1.759;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:371,89:0.19:460
chr16	81730381	rs9933631	C	A	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr16	81736324	rs4888167	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:78,30:0.28:108
chr16	81739376	rs3968320	T	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	81739404	rs9936604	T	C	281.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	81740829	rs67721827	T	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:70,27:0.28:97
chr16	81743328	rs68116357	A	G	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.633;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:195,50:0.20:245
chr16	81816733	rs8045964	C	T	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.371;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=12.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.87;ReadPosRankSum=0.241;SOR=0.030;set=HC	GT:AD:AF:DP	0/1:5,43:0.90:48
chr16	81816787	rs4476171	T	A	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	81816818	rs72834729	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.811;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr16	81819486	rs4354929	C	G	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:15,52:0.78:67
chr16	81819768	rs1143685	T	C	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:23,66:0.74:89
chr16	81891998	rs4341734	G	C	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=27.77;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	81892041	rs5818357	GGGA	G	3141.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	81892048	rs5016604	A	C	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=45.65;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	81892708	rs4888183	T	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	81902797	rs12445580	A	G	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	81903055	rs4889420	G	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	81904374	rs146168517	A	AT	232.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	81904375	rs35039495	C	A	241.84	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	81904433	rs34761601	TG	T	763.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	81904674	rs7192509	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	81904711	rs7192535	T	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	81929488	rs1143688	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.698;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:227,43:0.16:270
chr16	81931362	rs8053636	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.003;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.142;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr16	81931403	rs8049305	A	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.957;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr16	81939150	rs4435248	G	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	81941319	rs1143689	C	T	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	81941444	rs71400183	C	T	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr16	81946423	rs4243222	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr16	81946471	rs4243223	G	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr16	81953081	rs12448130	T	C	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	81953368	rs12448152	A	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	81954789	rs12446127	C	G	791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.828;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:193,58:0.23:251
chr16	81956927	rs4485360	C	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	81956999	rs41311272	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr16	81962071	rs4366702	A	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.839;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr16	81964977	rs7187863	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr16	81971403	rs1071644	T	C	3074.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:48,138:0.74:186
chr16	81973474	rs4405546	C	A	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	82124776	rs2955154	G	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	82131623	rs8191243	C	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr16	82182832	rs11859599	C	G	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	82197883	rs2303266	G	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	82203705	rs2303265	A	C	10933.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.939;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	82203711	rs2303264	G	T	11271.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr16	82203742	rs1134847	T	C	13268.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr16	82203758	rs2303262	C	T	13617.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr16	82203768	rs2303261	G	T	13471.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr16	82203786	rs2303260	C	G	11949.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr16	82672920	rs12444222	G	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-1.204;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:111,29:0.21:140
chr16	82673047	rs4782724	C	T	6584.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	82882118	rs1585533	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.997;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.040;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr16	82882417	rs35862345	C	G	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:21,64:0.75:85
chr16	82891896	rs17740895	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.954;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:53,13:0.20:66
chr16	82917768	rs929847	G	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.035;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:65,23:0.26:88
chr16	82917852	rs929848	T	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.676;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:89,37:0.29:126
chr16	83065664	rs6565105	G	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=0.319;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:101,34:0.25:135
chr16	83065965	rs2228685	T	A	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr16	83159350	rs7196370	A	C	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	83205098	rs75527425	A	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-1.290;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr16	83205106	rs78371107	T	A	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-1.577;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr16	83205185	rs76964433	G	T	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.613;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:102,40:0.28:142
chr16	83205228	rs77405883	G	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.564;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:141,44:0.24:185
chr16	83205290	rs56165681	G	T	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	83205395	rs80050029	C	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-1.842;SOR=0.158;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr16	83214480	rs7188594	C	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	83520078	rs2306907	G	A	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.929;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:94,26:0.22:120
chr16	83541724	rs140872284	A	AAGGGAGGG	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr16	83541742	.	A	AAGGGG	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=0.431;QD=20.79;ReadPosRankSum=0.431;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr16	83542061	rs4782540	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr16	83658649	rs11639522	C	G	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	83711887	rs34697339	C	T	1563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.095;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:470,124:0.21:594
chr16	83775093	.	G	GTATATA	219	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=2;MGOF=16;MMLQ=28;MQ=60.0;NF=1;NR=3;PP=219;QD=58.0;SC=ATGTGTGTGTGTATATATATA;SbPval=0.46;Source=Platypus;TC=7;TCF=1;TCR=6;TR=4;WE=83775101;WS=83775083;set=Platypus	GT:AD:AF:DP	1/1:3,4:0.57:7
chr16	83781604	rs16961631	T	C	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	83813393	rs58658289	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr16	83813511	rs57930285	G	A	6565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.98;ReadPosRankSum=-1.386;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:58,161:0.74:219
chr16	83813514	rs16961737	A	G	6617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.629;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.03;ReadPosRankSum=-0.330;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:63,165:0.72:228
chr16	83816828	rs153654	A	G	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	83817019	rs1048612	A	G	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	83828544	rs3743617	C	G	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.697;QD=17.14;ReadPosRankSum=0.272;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:48,103:0.68:151
chr16	83873259	rs435383	G	A	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	83873285	rs435367	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.52;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	83873300	rs146203605	T	TTG,TTGTG	593.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=49.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:0,6,6:0.50,0.50:12
chr16	83873312	rs367415	C	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=39.92;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	83886468	rs150603407	GTGCACACA	G	9150.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	83933296	rs446036	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	83940480	rs3815804	A	G	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr16	83982670	rs2432561	G	A	13540.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:2,495:1.00:497
chr16	83983755	rs2245008	G	A	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	83983867	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=1;HapScore=1;MGOF=36;MMLQ=18;MQ=59.15;NF=303;NR=280;PP=2965;QD=20;SC=GGCAGATACGCACACACAGAC;SbPval=0.54;Source=Platypus;TC=583;TCF=303;TCR=280;TR=583;WE=83983875;WS=83983857;set=Platypus	GT:AD:AF:DP	1/1:0,583:1.00:583
chr16	83983949	.	T	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=1;MGOF=37;MMLQ=20;MQ=55.91;NF=134;NR=153;PP=2965;QD=20;SC=TGCACATACATACTGGCACAC;SbPval=0.55;Source=Platypus;TC=292;TCF=137;TCR=155;TR=287;WE=83983957;WS=83983939;set=Platypus	GT:AD:AF:DP	1/1:5,287:0.98:292
chr16	83983994	.	A	G	1634	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=1;MGOF=40;MMLQ=24;MQ=48.8;NF=28;NR=46;PP=1634;QD=22.5509623317;SC=GCACATGTGCACACATGCACA;SbPval=0.52;Source=Platypus;TC=75;TCF=28;TCR=47;TR=74;WE=83984002;WS=83983984;set=Platypus	GT:AD:AF:DP	1/1:1,74:0.99:75
chr16	83984706	rs147293432	CCT	C	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.776;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:267,41:0.13:308
chr16	83984844	rs2244899	A	C	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	83984850	rs2244898	C	G	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=1.469;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	83986885	rs7203516	C	G	15697.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	83986888	rs7203864	G	A	15641.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	83992785	rs2665296	G	A	9686.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr16	83994569	rs2136662	G	T	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr16	83999118	.	G	A	12838.77	.	AC=1;AF=0.500;AN=2;DP=733;set=Intersection	GT:AD:AF:DP	0/1:171,560:0.77:731
chr16	83999261	rs35132222	C	A	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.449;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:461,102:0.18:563
chr16	84027225	.	CTGTGTG	C	1043.73	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;QD=34.79;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr16	84030955	rs8052260	C	T	5194.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:53,223:0.81:276
chr16	84031722	rs2292328	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr16	84032023	rs7201492	T	C	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:12,48:0.80:60
chr16	84034310	rs36152286	C	T	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:60,127:0.68:187
chr16	84034434	rs141446650	GAGGGAGACAGAGGGAAGT	G	1826.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr16	84034500	rs36160302	G	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr16	84034513	rs16962491	C	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr16	84035268	rs144271537	CCCTGGGCACCCCCTCACCTT	C	1419.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr16	84035320	rs34647179	G	A	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:37,91:0.71:128
chr16	84035334	rs35654559	G	A	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:40,113:0.74:153
chr16	84035348	rs35016623	G	T	3510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.954;QD=17.82;ReadPosRankSum=-2.565;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:45,152:0.77:197
chr16	84035446	rs2271298	C	G	6189.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:72,278:0.79:350
chr16	84035531	rs2271300	A	G	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:33,152:0.82:185
chr16	84035594	rs2271302	A	G	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:12,62:0.84:74
chr16	84035838	rs1995866	G	A	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.306;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.12;ReadPosRankSum=-0.159;SOR=1.488;set=HC	GT:AD:AF:DP	0/1:12,37:0.76:49
chr16	84035844	rs5012586	T	C	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.79;ReadPosRankSum=-0.043;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:14,40:0.74:54
chr16	84035919	rs5012585	T	C	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:37,101:0.73:138
chr16	84036011	rs34037353	C	CCT	3017.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:56,140:0.71:196
chr16	84049993	.	T	TA	477.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	84063320	rs143276186	A	AAGGAAG	2451.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:14,62:0.82:76
chr16	84065448	rs180990479	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr16	84093062	rs2280024	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.045;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:125,33:0.21:158
chr16	84097132	rs3215186	CAAAT	C	933.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.403;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.905;QD=8.05;ReadPosRankSum=-1.733;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr16	84101240	rs3835163	C	CACATTTT	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.797;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:103,21:0.17:124
chr16	84102135	rs870584	G	C	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.514;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:107,31:0.22:138
chr16	84104478	rs1980011	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr16	84121078	rs5818481	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.732;QD=0.76;ReadPosRankSum=1.182;SOR=1.405;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr16	84124604	.	C	CA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.131;QD=0.67;ReadPosRankSum=0.007;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr16	84132628	rs10690442	G	GAC	6301.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:64,157:0.71:221
chr16	84135453	rs1049884	A	T	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:33,87:0.72:120
chr16	84135493	rs907045	A	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr16	84135515	rs11550471	C	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr16	84158248	rs4378600	G	C	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-1.819;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:191,54:0.22:245
chr16	84163126	rs17574602	A	G	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.917;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:130,35:0.21:165
chr16	84203730	rs9972733	G	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.119;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.599;QD=3.58;ReadPosRankSum=-0.366;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:92,31:0.25:123
chr16	84208446	rs111554344	AT	A	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=1.169;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:148,33:0.18:181
chr16	84209634	rs2288019	C	G	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.115;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:225,71:0.24:296
chr16	84211483	rs8692	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=1.265;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:118,30:0.20:148
chr16	84211788	rs1056612	G	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:54,17:0.24:71
chr16	84212031	rs1056611	A	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.307;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr16	84212779	rs2230131	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=15.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=2.280;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:91,38:0.29:129
chr16	84212928	rs3743642	G	A	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=5.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.750;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:178,48:0.21:226
chr16	84213965	rs2278043	G	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.628;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:113,33:0.23:146
chr16	84214837	rs2303234	G	C	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.151;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:322,103:0.24:425
chr16	84215314	rs3815814	T	C	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=2.252;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:392,92:0.19:484
chr16	84217062	rs4782591	C	T	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr16	84218565	rs2230126	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-1.226;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:118,17:0.13:135
chr16	84229559	rs2303238	T	C	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=0.395;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:313,59:0.16:372
chr16	84230376	rs2303242	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=6.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.325;SOR=1.376;set=HC	GT:AD:AF:DP	0/1:183,46:0.20:229
chr16	84270381	rs244811	G	A	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:49,168:0.77:217
chr16	84271193	rs11647665	C	T	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	84328494	rs400345	C	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:6,38:0.86:44
chr16	84328752	rs369797	G	T	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	84328756	rs401782	G	C	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.86;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	84328826	rs429725	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	84357925	rs244786	G	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	84358121	rs244787	A	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	84360361	rs4782921	C	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.422;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr16	84360427	rs34519449	C	CG	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.556;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:98,25:0.20:123
chr16	84360463	rs12933194	C	T	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.110;QD=1.93;ReadPosRankSum=0.039;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:136,31:0.19:167
chr16	84402133	rs13330390	G	T	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.033;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:16,45:0.74:61
chr16	84402275	rs62048787	G	C	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:13,66:0.84:79
chr16	84402381	rs72804627	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr16	84402417	rs72804628	T	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr16	84431973	rs12148971	C	T	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	84438512	rs11149650	G	A	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	84444349	rs247818	A	C	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	84449024	rs3743649	G	A	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=1.119;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:139,38:0.21:177
chr16	84449032	rs3743650	G	T	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.385;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:151,43:0.22:194
chr16	84449206	rs3826145	T	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=11.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.403;SOR=0.187;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr16	84456642	rs247814	G	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr16	84456705	rs185063	C	T	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:21,80:0.79:101
chr16	84472972	rs247905	G	A	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:20,76:0.79:96
chr16	84473137	rs247904	G	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:28,70:0.71:98
chr16	84473195	rs247903	T	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-0.368;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr16	84476200	rs247897	A	T	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:45,159:0.78:204
chr16	84481995	rs247891	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	84485573	rs247885	C	A	5426.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.907;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.147;QD=25.97;ReadPosRankSum=1.006;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:1,208:1.00:209
chr16	84485749	rs12149888	C	T	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:34,147:0.81:181
chr16	84486700	rs193704	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=10.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.822;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr16	84486867	rs2435172	A	G	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr16	84487056	rs247884	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.187;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr16	84488754	.	T	C	23	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=28;MQ=60.0;NF=2;NR=3;PP=23;QD=11.5542425094;SC=CAACCCCAAGTACCAACAGCC;SbPval=0.47;Source=Platypus;TC=27;TCF=8;TCR=19;TR=5;WE=84488762;WS=84488744;set=Platypus	GT:AD:AF:DP	1/0:22,5:0.19:27
chr16	84492683	rs693552	A	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr16	84493032	rs3743654	C	T	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:47,130:0.73:177
chr16	84493081	rs437299	G	A	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.566;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:145,44:0.23:189
chr16	84493144	rs410388	C	G	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	84493927	rs35858301	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr16	84493954	.	G	GA	1203.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr16	84494020	rs393515	G	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	84494275	rs2241640	C	T	5748.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:49,248:0.84:297
chr16	84494450	rs381467	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.224;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chr16	84494458	rs138039878	C	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:18,61:0.77:79
chr16	84495224	rs369750	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.712;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr16	84495761	rs34205686	G	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr16	84497169	rs891258	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.000;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:100,20:0.17:120
chr16	84513463	rs899250	T	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr16	84520396	rs422145	A	G	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	84520537	rs431818	T	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	84520780	rs378384	G	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	84528235	rs62050761	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	84528293	rs2082037	C	T	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.261;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	84528317	rs2435171	G	C	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	84600347	rs247860	T	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	84600595	rs12929880	T	C	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-1.135;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:100,37:0.27:137
chr16	84623989	rs2288584	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr16	84651566	.	C	T	288.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr16	84690467	rs72797510	C	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-1.228;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:68,13:0.16:81
chr16	84691044	rs3751762	C	T	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.271;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:582,180:0.24:762
chr16	84774120	rs4510001	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-2.123;SOR=1.792;set=HC	GT:AD:AF:DP	0/1:53,10:0.16:63
chr16	84778685	rs1862792	A	G	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=2.074;QD=2.34;ReadPosRankSum=-0.724;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:362,94:0.21:456
chr16	84792291	rs41327444	A	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.074;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:177,44:0.20:221
chr16	84792428	rs7202832	C	T	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	84796603	rs12932018	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:15,61:0.80:76
chr16	84796864	rs35594082	A	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr16	84797637	rs3213810	T	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.537;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.600;QD=4.44;ReadPosRankSum=-1.076;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:89,34:0.28:123
chr16	84808824	rs774298	C	G	8074.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	84808900	rs774299	G	A	7770.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	84808969	rs2303232	G	C	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:23,122:0.84:145
chr16	84808984	rs774300	T	C	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:20,94:0.82:114
chr16	84872051	rs1546124	G	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	84876693	rs12599235	T	C	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr16	84876879	rs12596928	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.524;QD=12.48;ReadPosRankSum=-0.000;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr16	84879286	rs12931881	G	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.359;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:99,34:0.26:133
chr16	84879324	rs12051168	T	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=4.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.806;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:174,44:0.20:218
chr16	84879464	rs12051468	A	G	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=1.758;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:215,69:0.24:284
chr16	84882911	rs4783086	T	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr16	84882974	rs4783087	C	A	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr16	84883102	rs8061351	C	T	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.666;QD=15.59;ReadPosRankSum=-0.017;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:37,88:0.70:125
chr16	84883195	rs140532417	A	ATTG	1430.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr16	84884072	rs4782673	T	G	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:35,115:0.77:150
chr16	84884116	rs4783090	A	G	3912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=1.882;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:59,173:0.75:232
chr16	84888295	rs4782674	C	T	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:18,73:0.80:91
chr16	84888310	rs4782675	C	T	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:24,86:0.78:110
chr16	84888519	rs72337724	TAAAG	T	6446.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:45,160:0.78:205
chr16	84888541	rs2646127	T	C	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:30,136:0.82:166
chr16	84888597	rs2646126	C	G	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:15,57:0.79:72
chr16	84900472	rs72799566	T	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-1.866;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:138,60:0.30:198
chr16	84902483	rs72799568	A	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.065;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:210,41:0.16:251
chr16	84906098	rs721005	C	G	2138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-0.571;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:31,99:0.76:130
chr16	84906707	rs147512774	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:89,33:0.27:122
chr16	84906820	rs2934490	T	C	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=1.985;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:13,52:0.80:65
chr16	84907499	rs11298434	GT	G	806.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=5.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.123;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:38,68:0.64:106
chr16	84907502	rs71386873	T	G	72.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.760;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:85,22:0.21:107
chr16	84907503	.	T	G	678.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=4.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=0.183;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:53,57:0.52:110
chr16	84907670	rs2934486	G	C	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:40,157:0.80:197
chr16	84914299	rs59111100	A	AAATT	1668.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr16	84922859	rs767050	C	T	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:36,138:0.79:174
chr16	84940479	rs1874008	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.362;SOR=1.538;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr16	85015671	rs56033302	G	C	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-2.426;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr16	85023855	rs931713	C	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=5.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.009;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:184,38:0.17:222
chr16	85141789	rs76073304	G	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:15,55:0.79:70
chr16	85143924	rs141444139	C	T	7631.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:100,329:0.77:429
chr16	85145800	rs60296580	C	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.068;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=1.885;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr16	85145977	rs9931038	T	C	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.980;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:158,40:0.20:198
chr16	85691294	rs7404958	A	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	85699527	rs7195186	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr16	85704584	rs2303202	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	85706047	rs9940601	A	C	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	85711860	rs1053328	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr16	85712105	rs3815795	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr16	85720945	rs3815796	C	T	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:30,135:0.82:165
chr16	85720955	rs3815797	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.536;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:165,35:0.17:200
chr16	85721297	rs9930592	T	A	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	85722355	rs2303204	GC	TT	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.279;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=7.093;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=1.952;SOR=1.615;set=HC	GT:AD:AF:DP	0/1:79,22:0.22:101
chr16	85722560	rs58171120	C	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:81,37:0.31:118
chr16	85743732	rs2305357	C	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr16	85743906	rs141454251	T	A	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:24,156:0.87:180
chr16	85768717	rs1862733	C	T	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.702;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:140,41:0.23:181
chr16	85775064	rs388855	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	85775097	rs72803098	G	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr16	85775175	rs446444	G	A	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	85813231	rs8587	A	C	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	85813526	rs301163	G	A	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	85813880	rs301164	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	85813963	rs301165	C	T	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	85814899	rs3081701	T	TAGTC	13320.73	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr16	85814995	rs301166	A	G	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	85815074	rs301167	C	T	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	85838093	rs2599088	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	85838115	rs2733963	G	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	85838166	rs2599089	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	85838195	rs2733964	A	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr16	85838503	rs2599090	T	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	85838532	rs2733965	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	85838653	rs2599091	T	C	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	85838804	rs11419687	G	GA	1335.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	85839140	rs2599092	T	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	85839186	rs2733966	C	T	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	85839211	rs2075532	G	C	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	85839543	rs2641797	C	G	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	85839977	rs2075553	G	C	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	85840035	rs5818557	CA	C	6529.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	86369368	rs2581295	G	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	86369500	rs150378865	TAATG	T	823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=6.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=1.009;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:105,28:0.21:133
chr16	86371037	rs61744045	G	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.193;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:143,43:0.23:186
chr16	86565826	rs3751803	C	G	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	86565882	rs3751802	G	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.567;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:150,31:0.17:181
chr16	86574726	rs1025057	C	G	4817.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:46,199:0.81:245
chr16	86574818	rs17192954	C	G	4710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=0.553;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:61,213:0.78:274
chr16	86574897	rs35698660	T	TA	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.738;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:32,35:0.52:67
chr16	86575460	rs3213418	C	G	5134.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr16	86581563	.	A	G	752.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr16	86585905	rs8046613	C	A	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	86588655	rs2354022	G	C	12307.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr16	86589166	rs116869463	T	C	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=1.953;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:273,66:0.19:339
chr16	87339450	rs141912735	C	T	2779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.27;ReadPosRankSum=-1.105;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:51,131:0.72:182
chr16	87349333	rs6540037	A	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	87349489	rs7193801	A	G	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	87349529	rs7198660	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	87350773	rs3748393	C	A	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr16	87350997	rs4843592	A	G	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	87376605	rs2303763	C	T	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.243;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:118,35:0.23:153
chr16	87376623	rs4843237	C	G	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	87377455	rs2303764	G	C	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.236;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:75,24:0.24:99
chr16	87416903	rs8058715	A	T	326.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=-0.331;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr16	87426028	rs8043569	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	87435823	.	C	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-0.648;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:129,20:0.13:149
chr16	87436382	rs8044820	G	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	87436720	rs1054521	G	T	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	87436764	rs1054528	A	G	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	87445363	rs1050846	G	A	6178.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	87445839	rs3748400	C	T	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	87446053	rs2042395	G	A	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	87452546	rs4240794	C	A	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	87452584	rs8046992	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr16	87493737	rs11648852	T	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.253;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:161,39:0.20:200
chr16	87637893	.	C	CCTGCTGCTGCTG	849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.011;QD=5.09;ReadPosRankSum=1.030;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:136,31:0.19:167
chr16	87678441	rs8051448	C	T	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.915;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:349,102:0.23:451
chr16	87729397	rs117376372	C	T	6207.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:58,264:0.82:322
chr16	87734747	.	C	G	64	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5003;HP=2;HapScore=2;MGOF=7;MMLQ=24;MQ=57.99;NF=2;NR=0;PP=64;QD=49.3856062736;SC=ATGCACAGCGCGTGGGGGGTG;SbPval=1.0;Source=Platypus;TC=5;TCF=3;TCR=2;TR=2;WE=87734755;WS=87734737;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr16	87735527	rs7199037	G	A	5798.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:57,238:0.81:295
chr16	87741662	rs2290019	C	A	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:26,136:0.84:162
chr16	87742129	rs2290017	G	A	4761.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:47,201:0.81:248
chr16	87748198	rs2081981	G	C	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:32,96:0.75:128
chr16	87760337	.	A	C	493	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=2;HapScore=1;MGOF=27;MMLQ=24;MQ=60.0;NF=17;NR=4;PP=493;QD=25.1319625022;SC=TTCCCGGTCCAACGCCTTGCC;SbPval=0.57;Source=Platypus;TC=21;TCF=17;TCR=4;TR=21;WE=87760345;WS=87760327;set=Platypus	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	87764267	rs9934565	A	T	4705.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:74,201:0.73:275
chr16	87782322	rs3751727	G	C	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:35,101:0.74:136
chr16	87788756	rs2303770	A	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr16	87788864	rs2303771	G	A	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:30,86:0.74:116
chr16	87871714	rs2287121	T	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	87873247	rs750950	A	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	87903082	rs3829509	G	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr16	87921654	rs58800453	G	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr16	87921846	rs72816311	T	A	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:37,103:0.74:140
chr16	87921935	rs60779524	T	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr16	87935958	rs5818651	C	CA	3493.73	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:82,209:0.72:291
chr16	87938398	rs7186698	G	A	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:24,84:0.78:108
chr16	87960560	rs12922226	A	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	87969777	.	TA	T	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=2.136;QD=2.52;ReadPosRankSum=-1.090;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:48,29:0.38:77
chr16	88008712	rs71156278	C	CT	2466.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	88012150	rs8052854	T	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	88017809	rs3815820	C	T	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	88052161	rs7499814	C	A	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	88066655	rs11641367	A	G	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.16;QD=44.87;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	88066659	rs11646301	C	A	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.35;QD=44.30;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	88104956	rs7498497	C	T	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	88105725	rs8050209	G	A	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	88123598	rs8063486	C	G	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	88123697	rs8063654	C	A	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	88124525	rs28650772	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	88134285	rs11860533	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	88494947	rs11648572	T	C	19715.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr16	88494976	rs11640794	A	C	21906.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	1/1:0,803:1.00:803
chr16	88495367	rs28723506	G	A	7519.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:86,319:0.79:405
chr16	88495407	rs7199961	G	C	9802.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr16	88495654	rs12927001	A	G	28341.77	.	AC=2;AF=1.00;AN=2;DB;DP=1058;set=Intersection	GT:AD:AF:DP	1/1:0,1054:1.00:1054
chr16	88496008	rs12918876	T	C	8362.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:105,344:0.77:449
chr16	88497031	rs9924504	T	C	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	88497400	rs9938800	G	A	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	88497446	rs7197071	A	G	7524.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr16	88498221	rs4782300	C	T	20518.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr16	88498297	rs12445417	T	G	25252.77	.	AC=2;AF=1.00;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	1/1:0,952:1.00:952
chr16	88499539	rs9931465	C	G	9928.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr16	88501034	rs12598474	G	C	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.895;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:268,69:0.20:337
chr16	88501971	rs3812956	T	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:102,48:0.32:150
chr16	88502482	rs3812953	C	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:39,131:0.77:170
chr16	88502505	rs1983014	A	G	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	88504850	rs1105066	G	C	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.487;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:293,88:0.23:381
chr16	88504868	rs904783	A	G	10853.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:2,405:1.00:407
chr16	88505635	rs4782301	A	G	14539.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:4,524:0.99:528
chr16	88505734	rs4782362	C	T	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	88505786	rs78600508	C	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=7.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.795;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr16	88520027	rs189408382	G	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-1.621;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr16	88535242	rs55823018	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr16	88535341	rs56292801	G	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:20,70:0.78:90
chr16	88535407	rs35613341	C	G	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:52,157:0.75:209
chr16	88535591	rs36024491	C	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:12,48:0.80:60
chr16	88552370	rs3751673	A	G	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:55,146:0.73:201
chr16	88555301	rs34251187	C	A	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:24,106:0.82:130
chr16	88593165	rs7187787	C	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.000;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr16	88593208	rs138875144	CCCT	C	605.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=19.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=2.850;SOR=1.944;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr16	88593209	rs199766456	CCT	C	73.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.963;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr16	88593210	rs35678431	CT	C	179.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr16	88593218	rs59292167	C	G	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=19.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=1.713;SOR=2.014;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr16	88593483	rs72807428	C	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.208;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr16	88599695	rs67712719	GGA	G	5768.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	88599697	.	AG	CC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=45;NR=55;PP=2947;QD=20;SC=GCCAGAGCGGAGCCTCTGGCC;SbPval=0.49;Source=Platypus;TC=102;TCF=45;TCR=57;TR=100;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:2,100:0.98:102
chr16	88599699	.	CCTCTGG	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=24;MQ=60.13;NF=5;NR=56;PP=2965;QD=20;SC=CAGAGCGGAGCCTCTGGCCCA;SbPval=0.53;Source=Platypus;TC=63;TCF=5;TCR=58;TR=61;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:2,61:0.97:63
chr16	88599700	rs67322929	CT	C	5791.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	88599702	rs67873604	CTGG	C	5791.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=44.90;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	88600079	rs13335396	C	G	5685.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.487;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=3.189;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=1.516;SOR=0.369;set=HC	GT:AD:AF:DP	1/1:1,222:1.00:223
chr16	88620071	.	C	CAAAA	187.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	88620195	rs2879897	T	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	88620312	rs2340955	T	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	88620345	.	A	ACGCAGTGCAGAGCTGGGACGGACGCC	2022.73	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	88643457	rs936621	A	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	88643633	rs34829088	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.069;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr16	88644005	rs899728	A	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	88652794	rs12447794	C	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	88664758	rs3887592	T	C	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	88666035	rs6500481	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	88675177	rs9932685	A	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	88675194	rs9932692	A	G	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	88675529	rs9930974	C	T	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	88695300	rs4782387	C	T	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	88695332	rs4782306	G	C	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	88695338	rs4782388	C	G	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=3.458;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	88697487	rs2291160	G	A	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	88705804	rs2254073	T	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.370;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr16	88709712	rs7195830	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.131;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr16	88709737	rs1049255	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=1.701;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr16	88709828	rs1049254	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.888;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr16	88712712	.	T	TGCAGACCCAGGGGACGTGTGCGGACCGGGGCTGCAAAGTCTCAGCACAAG	1856.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.03;ReadPosRankSum=-0.543;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:16,37:0.70:53
chr16	88712731	.	C	T	674	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=4;MGOF=34;MMLQ=24;MQ=60.0;NF=10;NR=15;PP=674;QD=28.3508485019;SC=AGGGGACGTGCGCGGACCGGG;SbPval=0.05;Source=Platypus;TC=67;TCF=42;TCR=25;TR=25;WE=88712741;WS=88712721;set=Platypus	GT:AD:AF:DP	0/1:42,25:0.37:67
chr16	88712733	rs12926425	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr16	88712767	rs12933505	A	G	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr16	88712780	rs12933512	A	C	2050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.334;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.88;ReadPosRankSum=0.984;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:23,48:0.68:71
chr16	88712780	.	ACA	CCG	2845	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=24;MQ=60.0;NF=36;NR=8;PP=2845;QD=20;SC=CTTGATGTGGACACTAGCGGC;SbPval=0.64;Source=Platypus;TC=70;TCF=56;TCR=14;TR=44;WE=88712790;WS=88712757;set=Platypus	GT:AD:AF:DP	0/1:26,44:0.63:70
chr16	88712782	rs12709103	A	G	2019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.29;ReadPosRankSum=0.649;SOR=1.529;set=HC	GT:AD:AF:DP	0/1:23,51:0.69:74
chr16	88713236	rs4673	A	G	8133.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:104,347:0.77:451
chr16	88713473	rs4782308	G	A	3825.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:51,172:0.77:223
chr16	88713501	rs4782393	A	G	5461.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:76,237:0.76:313
chr16	88714559	rs2306422	C	T	5470.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	88717285	rs149933335	T	C	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=2.443;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:289,73:0.20:362
chr16	88717386	rs8053867	T	C	7568.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	88719877	rs12926212	C	G	4438.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	88721012	rs12935454	G	A	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	88723538	rs112485764	T	TG	411.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.641;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.61;ReadPosRankSum=0.705;SOR=5.084;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr16	88724275	rs56812649	A	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr16	88724347	rs2279258	G	T	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	88752693	rs11076698	T	G	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	88762932	rs35639468	CT	C	1537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.550;QD=13.26;ReadPosRankSum=0.829;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:30,86:0.74:116
chr16	88762943	rs1132579	A	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.887;QD=1.54;ReadPosRankSum=0.782;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:102,27:0.21:129
chr16	88763896	rs2879899	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr16	88763958	rs11076700	G	A	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr16	88767769	rs2306049	G	C	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:24,72:0.75:96
chr16	88767861	rs2306048	C	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr16	88772491	rs7194105	A	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.699;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr16	88772746	rs112070238	C	T	878.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.13;ReadPosRankSum=-0.501;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:3,35:0.92:38
chr16	88772928	rs880234	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.399;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr16	88773414	rs57958330	G	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr16	88773528	rs11641194	C	A	8247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.199;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.635;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:126,371:0.75:497
chr16	88773738	rs881633	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.722;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr16	88776141	rs4598894	G	A	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=2.794;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	88776141	.	GGTGAGCC	AGTGAGCC,AGTGAGCT	1162	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=44,37;NR=10,9;PP=56,1162;QD=1.6809483805;SC=GGGAGGGGCCGGTGAGCCTCG;SbPval=0.54;Source=Platypus;TC=54;TCF=44;TCR=10;TR=54,46;WE=88776156;WS=88776131;set=Platypus	GT:AF:DP	0/1:1.00:54
chr16	88776148	rs4377140	C	T	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.31;ReadPosRankSum=-0.268;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:8,56:0.88:64
chr16	88776297	rs4390574	T	C	10146.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr16	88776499	rs61744010	G	T	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:26,84:0.76:110
chr16	88776716	rs199634578	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=2.578;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:90,24:0.21:114
chr16	88777995	rs11076704	C	T	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:28,155:0.85:183
chr16	88778133	rs2879902	C	A	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:34,90:0.73:124
chr16	88778167	rs73262659	T	C	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.798;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr16	88778422	rs202238363	GGTGAGCGGGGGCCCA	G	5265.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:43,130:0.75:173
chr16	88778427	rs11361741	GC	G	990.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:130,39:0.23:169
chr16	88778615	rs7205989	G	A	5540.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:93,235:0.72:328
chr16	88778831	rs7201610	C	T	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:17,76:0.82:93
chr16	88779132	rs2290895	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=5.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.335;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:95,26:0.21:121
chr16	88779323	rs12148926	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr16	88779328	rs67815044	GC	G	575.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr16	88779361	rs115078297	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr16	88779371	.	G	GC	386	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=5;HapScore=4;MGOF=27;MMLQ=24;MQ=48.7;NF=0;NR=10;PP=386;QD=41.2;SC=GCCCCTGAGAGCCCCCTTCCC;SbPval=1.0;Source=Platypus;TC=16;TCF=2;TCR=14;TR=10;WE=88779379;WS=88779351;set=Platypus	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	88779753	rs73262667	C	T	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.371;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:207,84:0.29:291
chr16	88779952	rs74757912	C	CCT	2915.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	88780023	rs1317756	G	A	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:34,124:0.78:158
chr16	88780090	rs2290904	G	A	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.523;QD=2.76;ReadPosRankSum=-0.483;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:296,83:0.22:379
chr16	88780472	rs7205626	T	C	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	88780518	rs3826076	A	G	7843.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr16	88780634	rs11278302	AGGTGTG	A	13695.73	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr16	88780685	rs7191439	C	T	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=26.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	88780923	rs8050715	C	G	10418.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.01;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	88781125	rs8043637	T	C	9668.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr16	88781419	rs2306046	A	G	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	88781534	rs61737996	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.756;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:124,32:0.21:156
chr16	88781614	rs1058158	G	C	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:36,92:0.72:128
chr16	88782217	rs35544968	G	A	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.902;QD=2.96;ReadPosRankSum=-1.425;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:386,105:0.21:491
chr16	88782319	rs3214887	GC	G	8418.73	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:92,314:0.77:406
chr16	88782676	rs2290902	A	G	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	88782855	rs35917730	G	A	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-2.093;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:269,53:0.16:322
chr16	88783100	rs1803382	T	C	7207.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:98,317:0.76:415
chr16	88783374	rs8044367	A	G	8484.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	88783440	rs117669855	G	T	4501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-1.111;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:427,142:0.25:569
chr16	88783449	rs8057031	C	G	4446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.556;QD=7.58;ReadPosRankSum=-0.044;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:447,140:0.24:587
chr16	88783521	rs6500491	T	C	17958.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr16	88783738	rs4782432	A	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	88784114	rs11641326	T	C	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:12,68:0.85:80
chr16	88785072	rs4620939	G	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.62;ReadPosRankSum=-0.494;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr16	88785126	rs4520817	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.73;ReadPosRankSum=0.172;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr16	88786967	rs4401037	C	T	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	88787607	rs150376294	CCTT	C	8705.73	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:80,218:0.73:298
chr16	88787673	rs35159887	G	A	5333.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:89,225:0.72:314
chr16	88787704	rs8043924	G	C	7449.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	88788477	rs9935872	A	G	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	88788903	rs4238687	T	G	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	88788934	rs4238686	A	G	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=4.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.393;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:116,37:0.24:153
chr16	88789053	.	G	A	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.240;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:129,46:0.26:175
chr16	88789666	rs11281795	G	GCCTGCT	1230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.879;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:320,91:0.22:411
chr16	88791458	rs11645197	G	A	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr16	88791703	rs78217493	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.397;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr16	88792047	rs4782430	A	G	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	88792097	rs4782429	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	88792895	rs79092320	C	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=2.262;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:157,30:0.16:187
chr16	88793068	rs143054492	T	TCAGCGGGGC	3127.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr16	88793090	rs4516218	A	G	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=44.98;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	88793101	.	T	TG	2967	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=4;HapScore=1;MGOF=30;MMLQ=24;MQ=60.23;NF=38;NR=0;PP=2967;QD=20;SC=GGGCGGTGGGTGCGGGGGGGC;SbPval=1.0;Source=Platypus;TC=102;TCF=90;TCR=12;TR=38;WE=88793111;WS=88793080;set=Platypus	GT:AD:AF:DP	0/1:64,38:0.37:102
chr16	88793103	rs4424896	C	G	7073.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=40.19;SOR=3.310;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	88793813	rs8057198	T	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	88793843	rs2242169	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=1.114;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr16	88793858	rs2242170	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr16	88793910	rs2242171	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=4.235;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	88798365	rs8055958	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-1.734;QD=2.64;ReadPosRankSum=-0.776;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr16	88800610	rs79319346	G	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr16	88803195	rs4782410	T	C	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	88803982	rs6500493	C	G	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.816;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:144,46:0.24:190
chr16	88804734	rs7184427	A	G	6556.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	88804924	rs34600315	TC	T	8780.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	88808111	rs11076707	T	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	88808311	.	T	C	477	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=4;HapScore=1;MGOF=26;MMLQ=24;MQ=57.79;NF=12;NR=12;PP=477;QD=21.3238005228;SC=TCTCCAGGTGTGGGTGGGAGC;SbPval=0.53;Source=Platypus;TC=25;TCF=13;TCR=12;TR=24;WE=88808319;WS=88808301;set=Platypus	GT:AD:AF:DP	1/1:1,24:0.96:25
chr16	88808743	rs6500495	A	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	88808862	rs7201439	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	88808918	rs11648555	C	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	88809368	rs28525359	G	T	9819.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:1,357:1.00:358
chr16	88809434	rs9925084	A	G	14129.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr16	88809480	rs9925171	A	G	13363.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr16	88809686	rs9927855	T	C	15042.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr16	88809773	rs8048714	G	C	9888.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr16	88809893	rs9933845	GG	AC	10754.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	88810129	rs8053135	A	G	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	88851310	rs2911442	A	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	88872145	rs507329	T	C	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	88872511	rs510862	T	C	4534.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:66,204:0.76:270
chr16	89160452	rs9938075	A	G	123.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	89167066	rs57558972	C	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr16	89167075	rs11273288	C	CCCCAGGAGGCTCCCGGGAG	2644.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr16	89167094	rs7188200	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:39,99:0.72:138
chr16	89167140	rs7201122	G	C	4319.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:60,178:0.75:238
chr16	89167395	rs6500526	C	T	9444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.790;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:133,241:0.64:374
chr16	89167404	rs7193255	T	C	9571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.73;ReadPosRankSum=-1.306;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:137,250:0.65:387
chr16	89167431	rs6500527	G	C	6047.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:134,260:0.66:394
chr16	89167443	rs6500528	T	C	6037.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:141,272:0.66:413
chr16	89167458	rs6500529	C	A	6153.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:150,273:0.65:423
chr16	89167792	rs8060043	C	T	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chr16	89168981	rs4782457	T	C	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr16	89169205	rs4782456	C	G	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:38,105:0.73:143
chr16	89169219	rs10578141	CCT	C	3490.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:34,87:0.72:121
chr16	89169312	rs4782455	T	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr16	89178457	.	G	GTGCCTGCTCATCTTCCCACCGAGTGCTTCCTTTCCTCCGCCGCCGTGGGTCTC	1178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=4.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=45.34;ReadPosRankSum=-0.250;SOR=1.730;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr16	89178773	rs4782449	A	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr16	89180664	rs9940965	C	G	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:32,100:0.76:132
chr16	89180883	rs3743979	G	A	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:28,95:0.77:123
chr16	89180935	rs3743980	G	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:7,46:0.87:53
chr16	89187378	rs3743983	G	C	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:26,75:0.74:101
chr16	89188672	rs8058601	C	A	3228.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:31,131:0.81:162
chr16	89199651	rs12447947	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	89212200	rs4302032	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	89238190	rs12927793	G	A	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	89258037	rs34314447	C	G	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.839;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:270,73:0.21:343
chr16	89265485	rs193205099	C	T	7329.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:85,321:0.79:406
chr16	89267769	rs34679577	GC	G	1154.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.23;QD=32.99;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	89287613	rs10586525	CAG	C	1615.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	89288418	rs9931258	A	G	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	89291210	rs113560259	G	GGTGA	3148.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	89291309	rs28533907	A	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	89291945	rs11464538	A	AT	4972.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	89291948	rs12926996	C	T	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=1.570;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	89291951	rs12926997	C	T	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=1.495;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	89293271	rs28417933	A	C	8725.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	89293614	rs4785626	A	G	6553.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	89294381	rs28415940	T	C	9011.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr16	89294439	rs9921361	G	T	8095.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	89294511	rs28638280	C	T	7903.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	89294697	rs60437616	C	T	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	89299054	rs71158785	T	TA	1727.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.011;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;MQRankSum=0.553;QD=18.19;ReadPosRankSum=-1.896;SOR=1.421;set=HC	GT:AD:AF:DP	1/1:8,87:0.92:95
chr16	89299200	rs61078268	C	A	27123.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr16	89299227	rs62068537	C	T	29299.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:0,722:1.00:722
chr16	89299280	rs62068538	T	A	19968.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:2,727:1.00:729
chr16	89299888	.	T	TCG	15830.73	.	AC=2;AF=1.00;AN=2;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=43.85;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr16	89299890	.	A	ACTGCGTGTGCAACTCAACTCG	19471.73	.	AC=2;AF=1.00;AN=2;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=49.80;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr16	89299899	rs34175485	A	G	19728.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=40.43;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr16	89300015	rs62068548	A	G	18924.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:0,725:1.00:725
chr16	89300147	rs62068549	A	G	21693.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;MQRankSum=-1.177;QD=24.68;ReadPosRankSum=11.020;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:51,828:0.94:879
chr16	89345122	rs3102367	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr16	89345408	rs3096305	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:186,73:0.28:259
chr16	89345822	rs199558535	G	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.75;MQRankSum=-2.241;QD=16.78;ReadPosRankSum=0.319;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr16	89350038	rs2279348	G	A	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.737;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:415,127:0.23:542
chr16	89350178	rs2279349	G	A	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr16	89371827	rs3114912	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.130;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:87,15:0.15:102
chr16	89371839	rs2277908	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.144;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:70,14:0.17:84
chr16	89379936	rs3102350	T	C	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	89389645	rs3114900	G	C	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	89574166	rs3809641	C	G	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:24,114:0.83:138
chr16	89576879	rs5818722	GT	G	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.983;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:15,40:0.73:55
chr16	89577046	rs3922633	C	T	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:41,122:0.75:163
chr16	89590060	rs28643511	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	89590168	rs113476208	T	TATCTC	3936.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:46,95:0.67:141
chr16	89590243	rs3803680	G	A	5095.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:78,217:0.74:295
chr16	89590667	rs3803679	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,44:0.85:52
chr16	89596106	rs3803676	C	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr16	89597057	rs4785690	G	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:16,63:0.80:79
chr16	89597221	rs4785691	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:4,53:0.93:57
chr16	89598760	rs463701	A	G	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:15,58:0.79:73
chr16	89612979	rs35936864	AC	A	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=22.352;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.096;QD=9.14;ReadPosRankSum=0.383;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:28,29:0.51:57
chr16	89613037	rs462464	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.394;QD=0.87;ReadPosRankSum=-1.657;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:161,27:0.14:188
chr16	89613123	rs2292954	A	G	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.437;QD=1.39;ReadPosRankSum=-0.195;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:246,49:0.17:295
chr16	89613233	rs461405	A	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.571;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:87,18:0.17:105
chr16	89615453	rs4325552	A	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.438;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:56,23:0.29:79
chr16	89615765	rs2019604	T	G	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-1.445;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:196,62:0.24:258
chr16	89616790	rs66845605	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.378;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-3.427;QD=2.96;ReadPosRankSum=-1.427;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr16	89617064	rs3794632	G	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:76,29:0.28:105
chr16	89620148	rs730264	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:101,39:0.28:140
chr16	89620328	rs12960	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.380;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.580;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr16	89627460	rs2280370	T	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=3.30;ReadPosRankSum=1.381;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr16	89627671	rs174035	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr16	89628073	rs9930567	G	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:18,61:0.77:79
chr16	89628870	rs885268	C	G	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.532;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:178,40:0.18:218
chr16	89629218	rs258327	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	89645437	rs369230	G	T	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	89649675	rs455868	G	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	89650371	rs408800	T	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	89653032	rs452176	G	A	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr16	89653563	rs9924678	G	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.55;QD=22.19;SOR=6.518;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	89653999	rs140664874	TTGAG	T	7824.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	89654123	rs76691791	A	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	89654124	rs79838180	G	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	89654130	rs71374184	C	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	89656163	rs397564	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.244;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr16	89656251	rs464349	T	C	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.310;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:184,60:0.25:244
chr16	89657270	rs466141	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-1.441;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr16	89662422	rs461227	A	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=11.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.428;SOR=0.091;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr16	89662990	rs694285	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.423;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:95,30:0.24:125
chr16	89663072	rs659974	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr16	89696999	rs395593	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=26.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	89703424	rs445537	A	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	89703519	rs461115	C	T	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	89712889	rs460879	C	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	89713174	rs460984	C	T	14629.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr16	89717781	rs141950187	AAAAC	A	1591.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;QD=43.02;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	89720409	rs258338	T	A	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	89724572	rs154664	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	89751830	.	G	A	253	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=27;MQ=54.59;NF=15;NR=1;PP=253;QD=17.9857007842;SC=CGCAGTGGGCGGTGGTTTGGG;SbPval=0.67;Source=Platypus;TC=29;TCF=27;TCR=2;TR=16;WE=89751838;WS=89751820;set=Platypus	GT:AD:AF:DP	1/0:13,16:0.55:29
chr16	89751857	.	CCGCAGTGGGCGGTGGTTTGGGCCCGACCGAGCTGGTCT	C	1159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=2.678;QD=22.74;ReadPosRankSum=-1.110;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:3,48:0.94:51
chr16	89751895	.	T	C	1156	.	AC=2;AF=1.00;AN=2;BRF=0.1;FR=1.0000;HP=2;HapScore=1;MGOF=9;MMLQ=22;MQ=57.94;NF=41;NR=22;PP=1156;QD=18.9011303579;SC=CGAGCTGGTCTCGCAGTGGGC;SbPval=0.56;Source=Platypus;TC=70;TCF=45;TCR=25;TR=63;WE=89751903;WS=89751885;set=Platypus	GT:AD:AF:DP	1/1:7,63:0.90:70
chr16	89753031	rs397891	G	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	89753971	rs258325	T	C	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	89754255	rs258324	T	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	89758973	rs187282	A	G	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	89760492	rs465507	C	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	89760552	rs460057	T	C	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	89760959	rs56380063	C	G	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=1.555;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr16	89761214	.	ACCCGCAGCCCCCGCCCGTGCCCACGCCCTCTGCG	A	1495.73	.	AC=2;AF=1.00;AN=2;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=46.74;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	89763045	rs460367	C	T	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	89763263	rs462769	T	C	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	89774411	rs11860230	T	C	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	89775422	rs59660050	C	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr16	89775429	rs143353176	C	CCCCG	2012.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	89777761	rs12920315	C	T	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:61,133:0.69:194
chr16	89778202	rs376041423	G	GCC	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.990;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr16	89778219	rs28588261	A	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.736;SOR=1.328;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr16	89778224	rs7206836	G	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	89782989	rs7206570	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	89783187	rs4785706	C	T	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	89784398	rs4785707	C	G	12661.73	.	AC=1;AF=0.500;AN=2;DB;DP=1439;set=Intersection	GT:AD:AF:DP	0/1:531,579:0.52:1110
chr16	89784521	rs10468304	T	A	33181.77	.	AC=2;AF=1.00;AN=2;DB;DP=1269;set=Intersection	GT:AD:AF:DP	1/1:1,1255:1.00:1256
chr16	89787040	rs4785589	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:33,9:0.21:42
chr16	89789898	rs6500437	T	C	5656.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:77,252:0.77:329
chr16	89790167	rs4785590	G	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.656;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:96,16:0.14:112
chr16	89793555	rs2099105	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	89795485	rs7204478	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	89800529	rs9935559	C	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.492;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:211,52:0.20:263
chr16	89804335	rs17233826	CT	C	11295.73	.	AC=1;AF=0.500;AN=2;DB;DP=631;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:157,439:0.74:596
chr16	89805261	rs1800359	A	G	5427.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:113,246:0.69:359
chr16	89805977	rs1061646	G	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:11,80:0.88:91
chr16	89806347	rs7195906	A	T	2577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=1.990;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:34,116:0.77:150
chr16	89811196	rs9923733	T	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr16	89815217	rs1800345	C	T	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr16	89818491	rs3743860	T	C	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:19,65:0.77:84
chr16	89828977	rs113028128	G	GA	522.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.10;QD=15.37;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:5,29:0.85:34
chr16	89829201	rs9806894	G	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr16	89836323	rs7195066	C	T	4680.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:58,195:0.77:253
chr16	89836507	rs7200990	T	C	6436.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	89836865	rs886951	A	G	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.56;ReadPosRankSum=-1.425;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr16	89836872	rs886950	T	C	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.55;ReadPosRankSum=-0.369;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:9,27:0.75:36
chr16	89838078	rs1800340	A	G	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:28,132:0.82:160
chr16	89842029	rs3785275	C	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr16	89842374	rs1558184	T	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.97;ReadPosRankSum=-0.035;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr16	89845110	rs7187436	A	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr16	89845194	rs1800337	A	G	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=0.646;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:22,69:0.76:91
chr16	89846195	rs1800335	A	G	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	89849480	rs2239359	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-0.891;SOR=1.386;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr16	89849583	rs2239360	C	T	153.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	89857622	rs1057042	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr16	89857700	rs8049660	A	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:14,61:0.81:75
chr16	89857964	rs1800330	T	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:9,57:0.86:66
chr16	89858505	rs6500452	T	C	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:54,171:0.76:225
chr16	89858525	rs1800287	C	G	3634.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:44,154:0.78:198
chr16	89859008	rs3856	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr16	89859015	rs35617323	GT	G	1046.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr16	89866043	rs7190823	T	C	3289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.13;ReadPosRankSum=-1.431;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,152:0.79:192
chr16	89866160	rs7186192	A	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr16	89869761	rs1800286	T	C	5293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.13;ReadPosRankSum=-0.299;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:57,235:0.80:292
chr16	89874559	rs11076627	A	C	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr16	89874628	rs1800285	C	T	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:35,150:0.81:185
chr16	89882807	rs78004870	G	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	89882826	rs72631431	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr16	89902482	rs12598477	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr16	89912063	rs13331995	T	C	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:26,88:0.77:114
chr16	89925556	rs7200842	G	A	4456.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:66,197:0.75:263
chr16	89930129	rs55999134	G	C	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:18,78:0.81:96
chr16	89973777	.	CTCCCAGT	C	1201	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=1;MGOF=26;MMLQ=24;MQ=52.09;NF=0;NR=20;PP=1201;QD=61.35;SC=CACCTCCCTCCTCCCAGTTCC;SbPval=1.0;Source=Platypus;TC=49;TCF=2;TCR=47;TR=20;WE=89973804;WS=89973767;set=Platypus	GT:AD:AF:DP	1/0:29,20:0.41:49
chr16	89973796	.	A	G	1192	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=3;HapScore=1;MGOF=26;MMLQ=28;MQ=51.49;NF=1;NR=19;PP=1192;QD=61.3385606274;SC=CCCAGCTCCCAGCTCCCACCT;SbPval=0.98;Source=Platypus;TC=40;TCF=8;TCR=32;TR=20;WE=89973804;WS=89973767;set=Platypus	GT:AD:AF:DP	1/0:20,20:0.50:40
chr16	89981303	.	G	T	431	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=2;MGOF=26;MMLQ=23;MQ=56.41;NF=19;NR=2;PP=431;QD=22.1795815499;SC=ACATTTGTGTGTGTGTGCCTG;SbPval=0.74;Source=Platypus;TC=32;TCF=28;TCR=4;TR=21;WE=89981320;WS=89981293;set=Platypus	GT:AD:AF:DP	0/1:11,21:0.66:32
chr16	89981345	.	T	TTG	969	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=20;MQ=58.36;NF=14;NR=11;PP=969;QD=39.2;SC=GGGTGCACATTTGTGTGTGTG;SbPval=0.38;Source=Platypus;TC=43;TCF=21;TCR=22;TR=25;WE=89981353;WS=89981335;set=Platypus	GT:AD:AF:DP	0/1:18,25:0.58:43
chr16	89985844	rs1805005	G	T	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.419;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:451,126:0.22:577
chr16	89999169	.	G	A	8103.77	.	AC=1;AF=0.500;AN=2;DP=424;set=Intersection	GT:AD:AF:DP	0/1:91,332:0.78:423
chr16	90000925	rs4396536	T	C	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	90002290	rs1135425	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr16	90004868	rs56378598	C	T	4880.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:65,209:0.76:274
chr16	90037828	rs4785755	G	A	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	90050880	rs4785759	A	C	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	90075100	rs11642185	C	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	90075412	rs2241084	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	90102835	rs868045	A	G	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-1.577;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:126,47:0.27:173
chr16	90103087	rs4464078	C	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=3.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.639;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:228,43:0.16:271
chr16	90103117	rs7498985	G	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=6.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=1.174;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:177,31:0.15:208
chr16	90108832	rs2241035	C	T	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=2.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=2.363;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:276,87:0.24:363
chr16	90109711	rs3743825	A	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	90109756	rs3833069	G	GC	1770.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:16,67:0.81:83
chr16	90110027	rs3743824	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr16	90110289	rs1048148	C	A	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:53,163:0.75:216
chr16	90110950	rs1048149	C	T	2556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=2.766;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:41,115:0.74:156
chr16	90128224	rs2077426	C	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	90133137	rs16966444	G	T	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	90141355	rs12925933	A	C	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr16	90141477	rs7196459	T	G	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	90142087	rs35256427	G	A	9844.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr16	90161164	rs8049480	G	A	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-10.242;QD=10.41;ReadPosRankSum=-2.034;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:105,48:0.31:153
chr16	90161168	rs191288996	T	G	1562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.223;MLEAC=1;MLEAF=0.500;MQ=54.00;MQRankSum=-10.163;QD=10.56;ReadPosRankSum=-1.328;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:102,46:0.31:148
chr16	90161231	rs8055916	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:82,31:0.27:113
chr16	90161292	rs6500468	G	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-0.039;QD=0.56;ReadPosRankSum=-0.034;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chr16	90161319	rs112273117	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr17	6188	rs17606552	C	T	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	11743	rs34663111	A	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	11802	rs111634325	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	11830	rs62054999	A	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.46;SOR=3.958;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	14008	rs2294075	G	C	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	65610	rs62057050	G	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr17	65720	rs11868664	A	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	69317	.	C	CTTTT	256.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.98;MQRankSum=-0.180;QD=36.68;ReadPosRankSum=0.792;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr17	131709	rs11150871	A	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	131756	rs12451279	T	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	181474	rs12953074	T	C	6238.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	182990	.	A	C	1725	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=2;HapScore=1;MGOF=9;MMLQ=23;MQ=54.56;NF=24;NR=67;PP=1725;QD=19.3381451928;SC=GACACAGAGAAGGCCATTAGA;SbPval=0.53;Source=Platypus;TC=94;TCF=25;TCR=69;TR=91;WE=182998;WS=182980;set=Platypus	GT:AD:AF:DP	1/1:3,91:0.97:94
chr17	260142	rs7503725	G	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	260182	rs7502594	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	263294	rs35229416	C	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	295777	rs9902142	C	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	423051	rs2034088	T	C	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	440108	rs11653961	A	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr17	463843	rs741677	A	G	2147.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.496;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-0.538;SOR=0.613;set=HC	GT:AD:AF:DP	1/1:1,84:0.99:85
chr17	465993	rs36070043	G	GA	531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.482;QD=16.62;ReadPosRankSum=-0.683;SOR=0.096;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr17	504978	rs10521105	C	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	505162	rs4968055	A	G	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	505250	rs4968092	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	600502	rs2657633	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	602469	rs2543781	G	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	617869	rs11558129	G	A	10161.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	617993	rs35915949	C	T	9952.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr17	636320	rs111405529	T	TCTC	5939.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	643741	rs71357104	G	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	648186	rs7813	G	A	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	648498	rs2740349	C	T	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	648916	rs12942598	T	C	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	649067	rs1062923	A	G	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	649547	rs910925	G	C	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	649935	rs2740348	G	C	8902.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	650518	rs35696687	G	A	12577.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr17	655293	rs1884726	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	673895	rs2644706	C	G	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	686296	rs34512506	GT	G	187.52	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr17	686589	rs35144249	C	CT	731.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.422;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=13.07;ReadPosRankSum=0.663;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,47:0.84:56
chr17	704480	rs570710	C	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	707174	rs610542	C	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	722478	rs78598486	G	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	725433	rs503779	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	725727	rs61197180	G	A	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	916446	rs9894835	G	A	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	916466	rs4968074	C	T	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	934753	rs201716920	TCAGCCCCCG	T	342.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	935088	.	G	GCCTCCCTCCCTCCCTCCCTCCCCGCGCTCC	212.90	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.48;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	953456	rs2257540	C	T	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	1083083	rs62070499	A	G	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.79;SOR=2.557;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	1183354	rs6502774	T	C	10027.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr17	1183464	rs6502776	A	G	12506.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr17	1183775	rs62090189	G	A	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	1248583	.	T	TAAA	552.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;QD=29.09;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr17	1264611	rs140254754	TA	T	953.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.945;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:8,65:0.89:73
chr17	1265325	rs3752827	T	A	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	1359363	rs2229075	T	G	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	1370459	rs2302459	T	C	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	1370720	rs2302457	C	T	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	1371088	rs8069059	T	C	223.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	1371123	rs8072859	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	1371473	rs8079811	C	G	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	1371818	rs8080389	C	T	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	1372987	rs9303175	T	G	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	1373518	rs9905106	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	1373612	rs8081370	C	T	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.14;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	1377878	rs2286871	T	C	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	1377884	rs2286872	C	T	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.82;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	1381005	rs2286876	T	C	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	1383033	rs201728676	G	T	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr17	1384066	rs4790518	A	G	9607.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr17	1386094	.	G	GCACTGA	2741	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=20;MQ=58.11;NF=19;NR=7;PP=2741;QD=20;SC=TCCCACACTGGGCTTCTCTCC;SbPval=0.75;Source=Platypus;TC=43;TCF=29;TCR=14;TR=26;WE=1386103;WS=1386065;set=Platypus	GT:AD:AF:DP	1/0:17,26:0.60:43
chr17	1387334	.	CA	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.732;QD=1.19;ReadPosRankSum=0.361;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:89,26:0.23:115
chr17	1389094	.	C	CCCGCCCCCCGCA	81.25	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=27.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	1395682	rs12941864	C	T	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	1412455	rs5818804	GC	G	823.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	1419853	rs3815465	C	A	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	1424948	rs2277669	A	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	1446391	rs118080062	C	A	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	1479741	rs6502794	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	1489088	rs4790208	C	G	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	1490379	rs143498029	A	ACACTGCGTTTCCCG	2351.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	1490409	rs8078582	T	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	1493972	rs7210368	T	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	1493999	rs7406591	G	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	1494027	rs4790668	T	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	1495023	rs2002673	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.78;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	1516267	rs7214201	A	G	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-1.114;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr17	1516480	rs7219369	T	C	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr17	1530897	rs5018812	T	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	1538546	rs4790250	C	T	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	1538628	rs3744644	C	G	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	1542803	.	GAA	G	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-0.879;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr17	1550106	rs2293067	C	T	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	1576369	rs11078563	C	T	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	1576562	rs11078564	C	T	8178.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	1577690	rs28715427	C	T	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	1578032	rs8070091	A	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	1578122	rs8066413	C	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	1578835	rs35570313	A	G	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	1578939	rs33965342	C	T	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	1580929	rs11078565	G	C	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	1582205	rs9902534	G	A	9135.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	1584324	rs7503397	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	1585055	rs17761292	G	A	12440.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr17	1585130	rs11559305	A	G	12021.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr17	1587983	.	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	1611433	rs4790809	A	G	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	1611545	rs4790810	A	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	1630208	rs57207396	C	T	10666.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	1630395	rs59643265	T	C	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	1630584	rs7221974	A	G	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	1633868	rs62090047	C	T	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	1635614	rs62090048	T	C	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	1636934	rs3809870	A	G	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	1637074	rs3809871	A	G	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.407;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	1637302	rs3809872	A	G	12233.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr17	1639458	rs11549259	A	G	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	1649267	rs7501729	A	G	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	1649342	rs370496071	G	A	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	1651780	rs2277695	A	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	1657979	rs67887323	TG	T	218.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	1673276	rs1136287	C	T	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr17	1673405	rs12603825	G	A	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	1674544	rs71375537	CT	C	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.625;QD=11.47;ReadPosRankSum=0.237;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr17	1703543	rs3809875	G	C	14016.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr17	1704398	rs34564270	C	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	1707762	rs8067685	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	1707893	rs8072508	T	A	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	1715435	rs7503422	G	A	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	1731268	rs8067660	T	C	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	1733210	rs17291738	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	1733399	rs5030749	A	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	1748028	rs4790827	A	G	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	1756351	rs2287321	A	G	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	1761278	.	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.63;MQRankSum=1.391;QD=2.65;ReadPosRankSum=-2.227;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr17	1761279	.	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.054;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.63;MQRankSum=1.391;QD=2.65;ReadPosRankSum=-2.192;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr17	1761283	.	T	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.61;MQRankSum=1.439;QD=2.61;ReadPosRankSum=-1.891;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:51,8:0.14:59
chr17	1761284	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.423;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.61;MQRankSum=1.439;QD=2.61;ReadPosRankSum=-1.849;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:51,8:0.14:59
chr17	1761297	.	A	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.120;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.72;MQRankSum=1.576;QD=0.97;ReadPosRankSum=-0.207;SOR=0.099;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr17	1761431	rs3809874	T	C	9673.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr17	1761436	.	A	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-11.932;QD=0.79;ReadPosRankSum=-5.217;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:324,27:0.08:351
chr17	1761445	.	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DP=389;ExcessHet=3.0103;FS=6.460;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-13.158;QD=1.21;ReadPosRankSum=-4.563;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:348,37:0.10:385
chr17	1761447	.	G	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=392;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-13.393;QD=1.21;ReadPosRankSum=-4.247;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:350,38:0.10:388
chr17	1761457	.	C	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DP=391;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-13.701;QD=1.27;ReadPosRankSum=-2.228;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:344,39:0.10:383
chr17	1783812	rs2277694	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	1783909	rs202068855	C	T	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	1787020	rs17338990	T	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr17	1792174	rs2270412	G	A	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	1800217	rs7406062	G	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	1839674	rs9902457	G	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	1840468	rs9903800	C	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	1943430	rs113084028	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	1943880	rs35394823	C	G	14792.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	1943888	rs2236375	T	C	14141.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=1.212;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	1945041	rs7216804	A	G	6486.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	1945225	rs869020	T	G	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	1945621	rs2015866	G	T	5118.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.911;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=29.001;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.59;ReadPosRankSum=2.087;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:6,211:0.97:217
chr17	1945795	rs146098354	C	CCTCT	2368.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	1964759	rs145926620	C	CG	1594.90	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:8,73:0.90:81
chr17	1965085	rs7214308	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	1965096	rs12939002	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	1968983	rs2232486	T	C	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	1985050	rs8076897	T	C	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	2091765	rs903160	C	T	8704.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	2092006	rs903161	A	T	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	2186100	rs749240	C	T	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	2196150	rs216205	C	T	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	2200434	rs170043	A	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	2203348	rs216194	T	C	9397.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	2238741	.	TA	T	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.616;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:38,41:0.52:79
chr17	2279621	rs2429916	A	G	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	2297571	.	GCA	G	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.622;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:67,11:0.14:78
chr17	2318550	rs4613098	G	C	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	2318695	rs4790335	G	A	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	2322776	rs1056321	T	C	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	2565299	rs8067353	T	A	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	2568884	.	C	CT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.631;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr17	2595215	rs5818873	GC	G	1731.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	2595248	.	CCGCCA	C	987.73	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.16;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	2595261	.	G	GC	990.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	2595278	.	G	GC	1627.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	2595281	rs377576086	A	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=46.13;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	2595291	rs62068251	C	T	1610.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=42.39;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	2597723	rs66960934	GCAGCGGGGACA	G	7851.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	2598627	rs1003398	T	C	13301.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr17	2598639	rs1003399	C	G	12644.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr17	2599612	rs2302200	C	G	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	2604375	rs758417	C	T	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	2606715	rs1065479	G	A	12048.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr17	2607560	rs12953041	A	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	2703721	rs72122107	GGGCTGTCCCGGGGACTCCTCCA	G	5876.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	2868935	rs12950923	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	2883500	rs4790400	A	G	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	2921210	rs56791699	C	CGT	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=8.310;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.560;QD=21.46;ReadPosRankSum=-1.499;SOR=1.889;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr17	2921251	rs8064800	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	2923597	rs2304981	C	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	2923767	rs2304982	A	G	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	2924011	rs4790416	T	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	2929286	rs4072679	A	C	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	2929392	rs55904912	G	A	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	2929674	rs12941934	T	C	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	2930223	rs4790114	T	C	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	2930339	rs4790115	G	A	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	2935591	rs4239039	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	3119008	rs4325604	T	C	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	3119871	rs17174920	C	T	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	3181555	rs2013809	A	G	12009.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr17	3181662	rs9901356	G	C	8234.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr17	3182309	rs2014057	GT	AG	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	3195336	rs61734042	A	G	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	3195353	rs61734043	T	C	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	3195603	rs7218125	T	A	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	3195941	rs201699638	AG	A	1309.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	3195947	rs181040267	A	G	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	3195952	rs7214042	C	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	3214181	rs231678	T	G	11165.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	3301549	rs150988	G	A	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	3324004	rs146946227	C	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.87;QD=32.41;SOR=5.630;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	3324086	rs227788	G	A	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.72;QD=30.57;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	3337057	rs769431	A	G	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	3397702	rs12948217	C	T	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	3417123	rs906418	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	3418119	rs10579788	AGTT	A	1673.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	3419690	rs8082339	A	G	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	3422032	rs7216486	G	A	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	3422077	rs12946883	G	A	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	3424183	rs8079980	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	3430271	rs11657715	A	G	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	3435935	rs454738	C	A	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	3436080	rs395357	C	T	10497.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr17	3446885	rs322937	T	C	13501.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr17	3457954	rs11453205	T	TG	1985.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr17	3458072	rs322965	T	C	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	3475018	rs224547	A	G	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	3475367	rs224548	T	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	3475405	rs224549	C	T	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	3475564	rs224550	C	T	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	3476826	rs11441416	G	GC	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	3476832	rs2456855	A	C	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.02;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	3492002	rs161390	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	3492107	rs58427247	T	TA	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.715;QD=8.10;ReadPosRankSum=2.538;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:33,47:0.59:80
chr17	3492319	rs7220415	C	A	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	3493200	rs222747	C	G	10320.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr17	3493533	rs161387	A	G	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	3514028	rs224496	G	C	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	3553526	rs161350	A	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	3558417	rs459613	C	G	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	3558698	rs467277	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	3558698	.	GCG	ACA	1484	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=10;NR=24;PP=1484;QD=45.2196433783;SC=TAGGAGCAGGGCGTTCCAGCA;SbPval=0.64;Source=Platypus;TC=35;TCF=11;TCR=24;TR=34;WE=3558708;WS=3558688;set=Platypus	GT:AD:AF:DP	1/1:1,34:0.97:35
chr17	3558700	rs12938401	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	3559823	rs1800528	G	A	5612.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	3561396	rs161400	C	T	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	3564068	rs760273	G	A	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	3564073	rs3826496	A	G	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=1.297;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	3564084	rs760274	T	C	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	3577146	rs1063497	C	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	3591822	rs220488	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	3592740	rs220487	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	3593074	rs220486	A	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	3618298	rs1367950	C	T	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	3620138	rs2293881	A	G	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	3627473	rs9907144	C	T	13191.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr17	3627840	rs220462	G	A	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr17	3628212	rs220461	T	C	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	3628362	rs3809806	T	C	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	3629698	rs170208	A	G	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	3632836	rs1716	G	A	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	3632952	rs2915554	C	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	3704483	rs3809805	G	A	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	3765599	rs177985	C	G	5577.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	3769357	rs2567875	G	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	3769379	rs2567874	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	3769407	rs2532946	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	3775916	rs7214864	T	C	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	3776555	rs34231122	T	C	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	3783872	rs11651131	T	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	3801080	rs711174	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	3828600	.	G	A	1836.77	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	3828702	rs887387	T	C	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	3831240	rs753960	C	T	8412.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	3832182	rs9747965	G	A	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	3833500	.	C	T	364	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=2;MGOF=6;MMLQ=18;MQ=55.62;NF=15;NR=2;PP=364;QD=23.4571301498;SC=GCGCCCAGCCCACCTGGACCC;SbPval=0.92;Source=Platypus;TC=38;TCF=29;TCR=9;TR=17;WE=3833508;WS=3833490;set=Platypus	GT:AD:AF:DP	1/1:21,17:0.45:38
chr17	3833740	rs10153291	G	A	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	3839685	rs1062683	G	A	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	3839829	rs17846891	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	3840686	rs36057213	A	C	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	3840694	rs34866939	GA	G	2394.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	3840928	rs3179783	A	G	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	3844671	rs55858476	G	A	18672.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,672:1.00:672
chr17	3844985	rs17846890	A	C	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	3845927	rs17846889	A	G	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	3846675	rs71366582	C	T	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	3846802	rs758641	A	G	9093.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	3846891	rs146621763	TG	T	5191.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;MQ=60.62;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	3846899	rs757611	C	A	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	3848013	rs1800911	A	C	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	3854837	rs56224024	A	AC	620.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr17	3854840	rs2302298	G	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr17	3856615	rs1800915	A	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	3979948	rs143736611	C	T	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	3985832	rs2727061	A	G	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	3989636	.	AGCG	A	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-0.389;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr17	3989639	.	G	A	79	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=2;MGOF=24;MMLQ=28;MQ=60.0;NF=5;NR=0;PP=79;QD=22.7542425094;SC=TTCCCACAGCGGCAATCCCTT;SbPval=1.0;Source=Platypus;TC=19;TCF=16;TCR=3;TR=5;WE=3989647;WS=3989629;set=Platypus	GT:AD:AF:DP	1/0:14,5:0.26:19
chr17	3989642	.	AATCCCTTTCTGGGGGATTCCCACAGCG	A	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=-0.903;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr17	3989669	.	G	A	282	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=14;NR=6;PP=282;QD=15.8385606274;SC=TTCCCACAGCGGCAATCCCTT;SbPval=0.58;Source=Platypus;TC=20;TCF=14;TCR=6;TR=20;WE=3989677;WS=3989659;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	3989968	rs2727060	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	3994170	rs2727075	T	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	4005770	rs1869493	T	C	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	4007875	rs9907500	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	4027036	rs11078481	C	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	4027047	rs7225521	A	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	4027392	rs7208760	G	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	4045809	rs4239043	T	C	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	4046101	rs1454121	A	G	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	4046270	rs1454122	T	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	4071302	rs4790583	G	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	4071326	rs4790178	C	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	4074261	rs897030	A	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	4077485	rs4790585	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	4088291	rs2020118	C	T	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	4098573	rs5818941	A	AT	4724.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:18,221:0.92:239
chr17	4166804	rs2325881	C	T	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	4192401	rs148114489	TACACAC	TAC,T	979.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/1:1.00:25
chr17	4337283	rs35751906	G	A	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	4337412	rs3809853	C	G	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	4350182	rs2047233	T	C	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	4350367	rs2047232	A	G	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	4350373	rs3055435	GGT	G	6141.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	4350407	rs2047231	G	C	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	4351396	rs6502786	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	4351640	rs884250	G	A	10510.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	4352539	rs7224464	C	T	7560.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	4391276	.	G	C	528.77	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,29:0.33:87
chr17	4402803	rs184566	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	4436005	rs9892232	T	C	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	4437214	rs4790202	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.80;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	4439313	rs1077200	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	4439497	rs12945732	A	G	19306.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	4439501	rs1076071	C	G	20078.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.95;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr17	4439512	rs11658114	A	G	20790.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr17	4439727	rs146210718	T	TGG	1426.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.144;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.94;ReadPosRankSum=-0.366;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:3,52:0.95:55
chr17	4439795	rs12945562	C	G	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	4448853	rs2306267	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	4455500	rs7206974	T	C	13970.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr17	4458598	rs3809849	G	C	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	4461748	rs7215121	G	A	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	4463699	rs7216284	G	A	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	4463796	rs7216474	G	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	4497160	rs8080130	T	C	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	4498682	rs4790655	C	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	4500072	rs9906333	A	G	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	4500304	rs72634012	C	T	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	4510600	rs35090819	C	CT	5482.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	4534834	rs916055	A	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	4535186	rs138472652	T	C	10975.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	4541545	.	C	T	128.85	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	4541560	rs3887815	G	A	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	4541744	rs899452	T	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	4541995	rs34766541	G	A	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	4542717	rs11078528	G	A	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	4544729	rs9906597	A	G	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr17	4544978	rs369435246	G	GAGA	2998.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	4545581	rs2255888	C	T	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	4575283	rs3862485	A	G	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	4577112	rs11658808	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	4578007	rs4790673	C	G	14273.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:2,524:1.00:526
chr17	4579638	rs8071990	G	A	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	4580137	rs6502806	A	G	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	4580224	rs11078530	C	T	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	4585821	rs11541059	G	A	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	4586253	rs34352526	GA	G	1544.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	4594847	rs7226084	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	4620497	rs7208257	C	T	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	4622071	rs2036656	C	G	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	4622077	rs11463798	C	CT	1268.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;QD=34.29;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	4622638	rs1045280	C	T	16351.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr17	4641755	rs1050997	C	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	4642069	rs2250333	A	G	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	4644491	rs9903643	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	4686340	rs3853643	TT	GG	10527.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	4689313	rs2279961	G	C	7234.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	4689572	rs4790706	T	C	7732.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr17	4692559	rs2304969	G	T	9407.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr17	4693170	rs34850425	T	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	4693342	rs35910358	C	A	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:3,89:0.97:92
chr17	4693508	rs34421346	G	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	4699552	rs3169950	G	A	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	4699947	rs2241933	T	G	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	4710957	rs3867173	G	T	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	4712314	rs3786043	G	A	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	4712563	.	GTC	G	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=4.169;QD=0.61;ReadPosRankSum=1.213;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:229,26:0.10:255
chr17	4712757	rs2286671	G	A	7160.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	4714021	rs3081314	G	GGAAA	3969.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.26;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	4718776	rs1132448	G	A	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	4720469	rs1052748	C	T	19440.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,743:1.00:743
chr17	4722299	rs2326097	T	C	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	4750573	rs9890271	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	4758174	rs73341669	C	A	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	4778487	rs8078776	G	A	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	4795307	rs2586532	C	T	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	4795619	rs36079581	TG	T	1351.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	4837171	.	GGAGCCCACCTCAGAGCCCGCCCCCAGCCCGACCACCCCA	G	1377.73	.	AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=29.95;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	4837952	rs199616811	A	AG	991.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	4845768	rs238247	G	A	6478.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	4856084	rs151153333	TC	T	7919.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	4856376	rs238238	A	G	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	4856580	rs238239	T	C	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	4859102	.	T	TTGTCTCTGCTC	3111.73	.	AC=2;AF=1.00;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	4859156	.	C	T	198	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=3;MGOF=50;MMLQ=28;MQ=61.11;NF=14;NR=7;PP=198;QD=11.0843434546;SC=CTGTCTCTGCCCTGTCTCTGC;SbPval=0.78;Source=Platypus;TC=37;TCF=22;TCR=15;TR=21;WE=4859175;WS=4859154;set=Platypus	GT:AD:AF:DP	0/1:16,21:0.57:37
chr17	4859156	.	CCTGTCTCTGCT	C	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=11.635;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.000;QD=26.82;ReadPosRankSum=-2.239;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr17	4859167	.	T	C	297	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=3;MGOF=50;MMLQ=28;MQ=59.49;NF=21;NR=8;PP=297;QD=11.4403866396;SC=CTGTCTCTGCTCTGTCTCTGC;SbPval=0.78;Source=Platypus;TC=41;TCF=27;TCR=14;TR=29;WE=4859175;WS=4859154;set=Platypus	GT:AD:AF:DP	1/1:12,29:0.71:41
chr17	4863410	rs238224	A	G	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	4875566	rs238230	T	C	9601.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr17	4877120	rs238229	G	A	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	4881776	rs376516	C	G	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	4882952	rs1859434	G	A	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.69;SOR=1.877;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	4883818	rs238234	C	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=2.880;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	4885982	rs238233	G	A	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	4886037	rs238232	A	G	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	4890843	rs8071428	T	C	4680.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	4891956	rs426475	G	A	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	4893357	rs427703	G	C	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	4906146	rs10533622	GC	G	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=8.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.457;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr17	4926882	rs346828	A	G	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	4936972	rs346821	G	A	8615.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	4937575	rs346822	T	C	10346.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	4937982	rs346824	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	5036191	rs75631218	G	A	1728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-8.456;QD=13.10;ReadPosRankSum=2.253;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:84,48:0.36:132
chr17	5036205	rs80328123	A	C	2015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-9.009;QD=13.26;ReadPosRankSum=2.147;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:96,56:0.37:152
chr17	5036210	.	TC	GT	2063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=1.302;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-9.302;QD=12.66;ReadPosRankSum=2.982;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:106,57:0.35:163
chr17	5036214	rs114647990	C	T	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-9.818;QD=12.82;ReadPosRankSum=3.202;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:119,60:0.34:179
chr17	5036224	rs72830922	C	G	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-9.986;QD=11.12;ReadPosRankSum=1.896;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:140,72:0.34:212
chr17	5036274	rs78465432	C	A	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-8.440;QD=10.86;ReadPosRankSum=-1.479;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:162,80:0.33:242
chr17	5036281	rs76236903	G	C	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-7.929;QD=10.77;ReadPosRankSum=-0.809;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:163,75:0.32:238
chr17	5036329	rs72830923	A	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-6.482;QD=4.08;ReadPosRankSum=0.205;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:107,36:0.25:143
chr17	5036383	rs76207017	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.403;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-3.799;QD=3.58;ReadPosRankSum=-0.627;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr17	5048207	rs2304447	A	G	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	5058808	rs9899177	G	A	12692.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=27.71;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr17	5066305	rs2307138	A	T	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	5084763	rs1689965	G	A	11260.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr17	5085893	rs4115657	C	T	11477.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	5087040	rs9908414	A	G	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	5087602	rs2641232	C	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	5126674	rs2641256	A	G	7572.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	5126689	rs2585271	G	A	7686.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	5126876	rs2641255	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	5268356	rs71151866	TA	T	472.84	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:4,33:0.89:37
chr17	5328659	.	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.556;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:63,21:0.25:84
chr17	5334804	.	T	TA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-1.524;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr17	5991364	rs138757706	C	T	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	6014176	rs2302837	A	G	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	6021541	rs2302838	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	6328996	rs200401166	C	T	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	6330068	rs2292546	T	C	9271.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	6330109	rs2292545	G	A	8443.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	6330153	rs925616	C	T	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	6331803	rs8075035	T	C	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	6331836	rs12453262	T	G	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr17	6337247	rs12449580	C	G	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	6338530	rs7211442	G	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	6348823	rs7220100	A	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	6353679	rs7218283	A	C	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	6364753	rs11654099	A	G	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	6367538	.	C	T	6435.77	.	AC=2;AF=1.00;AN=2;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	6371738	rs35021251	A	G	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	6373737	rs11654175	C	T	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	6377986	rs12452411	T	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	6381939	rs938288	G	A	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	6387482	rs11656015	G	C	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	6406731	rs3809836	T	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	6441164	rs165106	T	C	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	6441207	rs9907305	C	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	6493056	rs367918	T	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	6538355	rs2301873	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	6545702	rs9909640	C	T	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	6546259	rs2285999	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	6553583	rs2301874	G	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	6555546	rs56268735	C	CG	9334.73	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	6596497	.	A	AAC	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.169;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr17	6684003	rs17731806	C	G	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	6899559	rs312467	C	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	6899629	rs3218667	C	T	365.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.274;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.52;ReadPosRankSum=-0.307;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr17	6900362	rs2070589	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	6900383	rs312468	T	C	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	6902179	rs312470	G	A	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	6902743	rs1042356	G	A	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	6902760	rs1126667	A	G	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	6903537	rs2292353	G	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	6905061	rs1042357	T	G	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	6906085	rs11571338	C	CT	317.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	6909377	.	GC	G	1055	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=1;MGOF=94;MMLQ=28;MQ=58.71;NF=1;NR=0;PP=1055;QD=1104.03089987;SC=AAATGGTGGGGCCGGGGGGGG;SbPval=1.0;Source=Platypus;TC=11;TCF=6;TCR=5;TR=1;WE=6909385;WS=6909367;set=Platypus	GT:AD:AF:DP	1/1:10,1:0.09:11
chr17	6915401	rs2271316	C	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	6919093	rs14309	T	C	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	6926907	rs72834413	G	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	6927350	rs312461	A	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	6928019	rs146207245	C	CCAG	7771.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:11,190:0.95:201
chr17	6929924	rs379478	T	C	7936.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	6933217	rs421264	T	G	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	6942111	rs33979567	G	T	12116.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr17	6946357	rs75636181	C	A	6673.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	7011087	.	T	TACACATTACACACACCGC	20004.73	.	AC=2;AF=1.00;AN=2;DP=373;set=Intersection	GT:AD:AF:DP	1/1:1,363:1.00:364
chr17	7011129	rs530779	C	T	15559.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr17	7012073	rs2304980	G	T	8970.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.72;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	7012077	rs2304979	C	T	9093.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	7012079	rs2304978	C	T	9093.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	7080069	rs12945299	A	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	7080111	rs34652175	TCA	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.769;QD=0.65;ReadPosRankSum=-1.195;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:90,14:0.13:104
chr17	7080316	rs55714927	C	T	5569.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	7131117	rs77934771	G	A	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	7139238	rs222851	G	A	16130.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr17	7140606	rs222852	A	G	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	7145492	rs58574748	C	CA	6063.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	7185788	rs222848	T	C	11399.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr17	7197633	rs8069533	A	G	162.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	7197794	rs222859	C	A	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	7217944	rs62059197	G	A	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	7225425	rs2062771	T	C	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	7245371	rs4796407	A	G	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	7246940	rs3809829	T	G	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	7249870	rs11657406	G	T	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	7251605	rs2292066	G	C	5522.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	7251839	rs113342378	G	A	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	7253659	rs2292068	T	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	7258481	rs72840988	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	7286266	rs1554947	C	T	5599.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	7290787	rs5819155	TG	T	8348.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	7290821	rs968580	T	C	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr17	7290922	rs35318852	AT	A	369.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.728;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr17	7292107	rs6503018	G	A	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	7293715	rs3744549	C	T	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	7297452	rs4613118	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	7307103	.	A	ACC	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.03;ReadPosRankSum=1.052;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr17	7307287	rs9900153	T	C	13483.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr17	7317647	rs60631713	A	AC	3125.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	7318061	rs78355381	T	C	11533.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	7318396	rs2241233	C	T	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	7318559	rs6503019	G	A	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	7326835	.	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.327;QD=1.08;ReadPosRankSum=-1.328;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr17	7329134	rs72842820	G	A	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	7329632	rs13290	T	G	17596.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:2,650:1.00:652
chr17	7345819	rs4151129	A	AGGTAC	2302.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	7346302	rs3853818	T	C	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	7350544	rs2302767	G	A	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	7357864	rs7210231	C	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	7358520	rs2302761	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	7358803	rs7214344	G	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	7358861	rs2302762	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	7359356	rs71877980	G	GT	333.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;MQRankSum=0.000;QD=18.54;ReadPosRankSum=0.580;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr17	7366619	rs34914463	T	C	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	7385204	rs9891297	T	C	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	7399866	rs2301609	G	A	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	7400137	rs9898024	T	C	9387.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	7404107	rs7217707	T	C	10524.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	7404209	rs6503030	G	A	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	7404991	rs2228130	T	C	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	7406343	rs9890028	T	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	7411770	rs2228132	C	T	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	7411855	rs4796432	A	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	7413038	rs2269459	A	G	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	7413057	rs7213878	C	T	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	7413120	rs7218412	A	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	7416599	rs55931722	G	A	52515.73	.	AC=2;AF=1.00;AN=2;DB;DP=2429;set=Intersection	GT:AD:AF:DP	1/1:5,2056:1.00:2061
chr17	7416683	rs9894023	A	G	58333.77	.	AC=2;AF=1.00;AN=2;DB;DP=2276;set=Intersection	GT:AD:AF:DP	1/1:3,2248:1.00:2251
chr17	7417086	rs4344809	G	A	34087.77	.	AC=2;AF=1.00;AN=2;DB;DP=1269;set=Intersection	GT:AD:AF:DP	1/1:0,1261:1.00:1261
chr17	7452542	rs77711855	C	T	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	7452977	rs9899183	C	T	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	7460517	rs3803798	G	C	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	7460559	rs4968189	T	G	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	7460758	rs28362665	G	A	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	7462555	rs11552708	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	7462969	rs3803800	A	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	7464413	rs6608	C	T	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	7468216	rs4968212	T	C	8439.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	7470285	rs58837213	CA	C	7293.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	7474277	rs4968213	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	7477938	rs1057086	G	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	7480547	rs2270341	T	A	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	7484101	rs9901673	C	A	13779.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:3,494:0.99:497
chr17	7490379	rs2302661	G	C	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.40;SOR=4.590;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	7490810	rs10852891	G	A	9375.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr17	7499382	rs858526	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	7504858	rs17643401	G	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	7534671	.	C	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=1.409;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:58,10:0.15:68
chr17	7536527	rs6259	G	A	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	7578115	rs1625895	T	C	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	7578406	rs28934578	C	T	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	7578645	rs2909430	C	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	7578711	rs141204613	CTTT	C	185.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=23.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	7579472	rs1042522	G	C	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	7579643	rs146534833	CCCCCAGCCCTCCAGGT	C	12213.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	7579801	rs1642785	G	C	4481.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=54.516;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.239;QD=18.44;ReadPosRankSum=1.491;SOR=1.375;set=HC	GT:AD:AF:DP	1/1:12,231:0.95:243
chr17	7630505	rs11867551	T	C	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	7640300	rs150748195	A	AAAAT	3150.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr17	7646166	rs2642160	A	G	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	7677927	rs4791759	A	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	7681412	rs7359662	C	G	6627.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	7700712	rs1565817	C	T	14828.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr17	7702357	rs12949280	C	T	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	7705089	rs4791834	C	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	7708096	rs9889268	G	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	7708163	rs367854692	CA	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.521;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.69;ReadPosRankSum=0.708;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:88,24:0.21:112
chr17	7721931	rs10153304	G	A	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	7721995	rs116984006	G	A	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	7726612	rs34255363	C	CA	176.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.463;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr17	7726665	rs55758061	C	CAG	1036.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.000;QD=16.72;ReadPosRankSum=0.068;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:20,42:0.68:62
chr17	7733555	rs7405476	A	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	7733833	rs34121753	A	G	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	7750177	rs61462443	T	TACCACC,TACC	5815.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=234;set=Intersection	GT:AF:DP	1/1:0.98:130
chr17	7751050	rs62059713	C	T	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	7754993	rs12939056	G	A	6434.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	7788409	rs201772788	C	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	7811998	rs4239111	T	C	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	7948175	rs6503070	C	T	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	7950377	rs11541083	C	T	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	7950952	rs9898751	C	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	7951819	rs4792147	A	G	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	7960380	rs8072641	T	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	7960625	rs9896256	C	T	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	7961129	rs7214975	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	7977105	rs12937410	A	G	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	7979463	rs2289586	A	G	13011.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr17	7984157	rs3816263	A	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	7990577	rs3217514	GAC	G	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=3.71;ReadPosRankSum=3.480;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:129,37:0.22:166
chr17	7991330	rs9909784	T	G	600.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=13.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.03;ReadPosRankSum=2.094;SOR=6.438;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr17	7991628	rs9903712	C	A	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	7999957	rs3809881	G	A	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	8007650	rs2289587	T	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	8007683	rs2289588	C	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	8015579	rs894505	G	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	8027593	rs3027279	G	T	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr17	8045006	.	TCCCTTGAACTTGAGCTCAATTCTTTTTTCTCC	T	4360.73	.	AC=2;AF=1.00;AN=2;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=43.61;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	8046772	rs2585405	C	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	8048010	rs2289591	C	A	10204.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr17	8048169	rs2253820	T	C	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	8048283	rs2735611	G	A	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	8051639	rs10462024	A	G	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	8052415	rs56408410	G	A	534.84	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	8053085	rs3027178	T	G	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	8064081	rs144670087	A	AGG	606.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.39;QD=46.67;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	8064083	rs1061032	T	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=41.05;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	8064779	rs75664430	C	G	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	8076741	rs72479723	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	8076877	rs9893295	G	A	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	8076911	rs11655582	A	G	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	8076917	rs56346215	A	C	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	8092694	rs8531	T	G	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	8108331	rs1059476	A	G	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	8132763	rs3826543	T	C	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	8135061	rs3027238	T	C	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	8137737	rs4792621	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	8138643	rs12603646	A	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	8139327	rs4791626	A	G	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr17	8139339	rs66582670	T	C	9995.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:1,374:1.00:375
chr17	8139463	rs74506939	G	A	9284.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	8141324	rs11655903	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	8141707	rs6503093	T	C	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	8157310	rs9891699	C	T	10019.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	8158273	rs6503094	A	G	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	8159232	rs7221716	A	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	8166378	rs7206953	T	C	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	8167600	rs11078738	T	C	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	8167962	rs78296773	G	T	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	8168224	rs9902252	T	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	8168805	rs9897842	A	G	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	8169006	rs11655563	T	C	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	8193473	rs11245	G	A	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	8194319	rs6503098	T	C	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	8215534	rs3744651	C	T	25668.77	.	AC=2;AF=1.00;AN=2;DB;DP=1053;set=Intersection	GT:AD:AF:DP	1/1:0,1035:1.00:1035
chr17	8216468	rs871841	T	C	16928.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr17	8216737	rs2302867	A	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	8219478	rs2270445	A	G	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	8224133	rs3744646	T	C	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	8224276	rs3744647	T	C	7163.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	8243661	rs12601097	G	A	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	8243785	rs12936935	A	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	8272767	rs2430949	G	A	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	8339103	rs8065181	C	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	8339283	rs3744652	C	T	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	8339307	rs8064417	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	8349984	rs369297844	T	TC	204.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8383253	rs4791316	G	C	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	8383344	rs3215073	G	GC	1951.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	8383894	rs6503120	A	G	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	8384875	rs904417	T	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	8387438	rs113838551	G	GATGA	7163.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	8390655	rs7219356	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	8393900	rs2270744	G	C	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	8393979	rs2270743	C	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	8395894	rs904416	T	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	8396010	rs3744653	A	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	8397315	rs2277670	C	T	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	8412133	rs9889907	A	G	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	8413358	rs145464629	A	ATT	814.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.40;ReadPosRankSum=1.538;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:7,35:0.83:42
chr17	8416901	rs11374	C	T	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	8417006	rs66631876	GT	G	2721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.469;QD=13.09;ReadPosRankSum=-1.956;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:39,169:0.81:208
chr17	8424270	rs8067456	G	A	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	8449716	.	T	TA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.775;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr17	8449767	rs4791724	A	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	8451744	rs57472344	GA	G	1148.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	8455532	rs883811	G	A	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	8473182	rs422173	G	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	8478586	rs10573578	CAAT	C	1366.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	8478605	rs268460	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	8633310	rs1971773	C	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	8633656	rs12937401	T	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	8638591	rs116841782	C	T	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	8647181	rs9902109	T	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	8647337	rs7218546	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	8647931	rs10852904	G	C	6329.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	8659680	rs146385099	TGGA	T	1725.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=43.14;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	8660948	rs111500769	T	TTTCTCC	1433.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	8725214	rs56322041	A	AG	8812.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	8726160	rs2074258	A	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	8736394	rs12945801	T	C	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	8738575	rs1005898	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	8739821	rs12948724	G	C	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr17	8742830	rs9910718	C	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	8742862	rs9910741	C	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	8743118	rs16957654	G	A	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	8743174	rs28704961	G	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	8753004	rs7218411	G	T	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	8784149	rs4791764	T	C	10598.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	8784361	rs4791765	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	8784900	rs376963225	C	CAGTA	9095.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	8785087	rs9903447	A	C	43052.77	.	AC=2;AF=1.00;AN=2;DB;DP=970;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,961:1.00:961
chr17	8785092	rs9902600	C	T	43340.77	.	AC=2;AF=1.00;AN=2;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,984:1.00:984
chr17	8790074	rs11078770	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	8792003	rs9915880	C	T	7644.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	8792029	rs381309	A	G	7984.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	8792093	rs16957702	G	A	8604.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	8792171	rs11650737	T	C	6772.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	8792326	rs11654380	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	8792371	rs11654094	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	8792514	rs394811	G	A	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	8793905	rs365024	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	8794002	rs364676	T	C	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	8794014	rs381198	A	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	8809148	.	CT	C	300.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.80;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	8812683	rs181534	T	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	9086338	rs11078789	G	T	4509.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.987;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.64;ReadPosRankSum=-0.502;SOR=0.150;set=HC	GT:AD:AF:DP	1/1:2,181:0.99:183
chr17	9154103	rs2072322	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	9154118	rs17675967	C	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	9395033	rs6503214	A	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	9395231	rs9893664	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	9408594	rs2249929	A	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	9408609	rs2125348	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	9471711	rs1133295	T	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.70;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	9479048	rs7210038	T	C	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	9479098	rs7224817	C	A	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	9479364	rs6503230	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	9515777	rs6503235	G	A	5842.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	9632427	rs367655692	AT	A	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-1.241;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr17	9830171	rs56199323	C	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	9846521	rs17339499	G	C	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	9846631	rs8066006	G	A	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	9846724	rs733804	C	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	9850440	rs62064532	C	T	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	10205067	rs2008528	C	T	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	10216686	rs9989461	G	A	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	10219486	rs12453404	A	G	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	10227274	.	C	G	2181.77	.	AC=2;AF=1.00;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	10254197	rs2108568	A	G	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	10267610	rs4791981	C	T	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	10296486	rs33969260	G	A	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	10297658	rs8069834	A	G	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	10303144	rs3815314	G	C	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	10304261	rs3744552	G	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	10318483	.	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=4.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.310;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:82,13:0.14:95
chr17	10318636	rs8068729	A	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	10357281	rs3826444	T	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	10366204	rs35984286	T	C	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	10400963	rs723903	C	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	10414266	.	C	CA	403.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr17	10415840	rs2007027	A	G	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	10424897	rs5819275	C	CAT,CATAT	356.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=24;set=Intersection	GT:AF:DP	0/1:0.87:15
chr17	10427924	rs1042236	G	A	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	10431275	rs12952334	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	10431877	rs11372676	A	AT	991.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	10432638	rs2277651	T	C	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	10434925	rs3744565	T	C	9839.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr17	10435325	rs11379780	G	GA	1328.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	10442977	rs2277653	T	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	10446182	rs719277	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	10446508	rs11078849	T	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	10448769	rs11078850	A	T	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:3,65:0.96:68
chr17	10450816	rs12600539	T	C	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	10541741	rs201626	A	G	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	10543281	rs371738295	TA	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.302;QD=1.76;ReadPosRankSum=-2.338;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr17	10595388	rs2520178	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	10633245	rs202312	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	10633321	.	C	CG	886.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	11459012	rs1030055	G	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	11511412	rs4792156	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	11513661	rs2191072	C	T	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	11522764	rs10852799	G	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	11523082	rs9892256	A	G	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	11532613	rs9896886	T	C	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	11532835	rs9895535	A	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	11536049	rs11655911	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	11543520	rs11653848	T	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	11550340	rs11870495	T	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	11550367	rs145421333	C	A	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	11572669	rs73975043	G	A	11859.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,459:1.00:459
chr17	11583089	rs8071438	T	C	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	11593821	rs7220893	C	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	11604598	rs7214186	T	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	11622494	rs12945437	A	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	11648332	rs3744578	C	T	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	11648444	rs3744580	T	C	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	11651057	rs3744581	A	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	11660722	rs11078030	G	T	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	11666674	rs2277657	T	C	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	11772285	rs59647695	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	11778240	rs7211854	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	11787975	rs11078042	T	C	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	11806266	rs3815269	T	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	11887518	rs34299203	GA	G	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=3.646;QD=2.70;ReadPosRankSum=-0.508;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:55,33:0.38:88
chr17	12013608	rs190300515	C	T	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	12620761	rs12944823	A	G	6197.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	12620897	rs12602716	G	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	12647490	rs12709295	T	C	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	12799985	rs2302068	G	A	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	12820421	rs35221864	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	12820632	rs12451747	A	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	12856005	rs2072252	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	12856039	.	CTTTTTTTTTTT	C	246.76	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.25;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	12859125	rs3214256	C	CG	2799.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	12860183	.	AAC	A	135	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=24;MQ=60.0;NF=1;NR=5;PP=135;QD=23.3333333333;SC=TTCCCCTATAAACACACACAC;SbPval=0.22;Source=Platypus;TC=24;TCF=1;TCR=23;TR=6;WE=12860192;WS=12860173;set=Platypus	GT:AD:AF:DP	0/1:18,6:0.25:24
chr17	12862309	rs11868628	T	C	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	12862359	rs9904572	G	A	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	12897293	rs9915058	A	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	12898994	rs2286338	C	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	12920062	.	C	CA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.533;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr17	13399486	rs11385090	A	AT	2896.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.954;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=0.000;QD=17.35;ReadPosRankSum=0.699;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:19,148:0.89:167
chr17	13446924	rs9913045	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	13972811	rs6502330	G	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	13977813	rs143814384	C	CTTTA	2743.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;MQ=60.32;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	13980350	rs2072279	G	A	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	14005373	rs1017076	C	T	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	14005386	rs2108683	T	C	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	14005439	rs2159132	G	A	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	14063389	rs7212977	G	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	14095309	rs2230354	A	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	14095566	rs151441	T	C	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:186,69:0.27:255
chr17	14095639	rs373313742	A	G	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=23.226;MLEAC=1;MLEAF=0.500;MQ=49.02;MQRankSum=-1.582;QD=4.56;ReadPosRankSum=-4.630;SOR=1.824;set=HC	GT:AD:AF:DP	0/1:166,64:0.28:230
chr17	14095682	rs2158978	T	C	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	14139414	rs146117581	C	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.50;QD=32.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	14139565	rs4791563	T	C	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	14139774	rs4791564	C	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.66;QD=27.43;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	14139891	rs62052131	A	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.66;QD=26.03;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	14140103	rs4792453	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	14248423	rs9906855	T	C	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	15134175	rs13422	T	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	15154966	rs66507245	T	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	15162389	rs231020	T	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	15222535	rs11387328	C	CA	528.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	15234232	rs2305959	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	15234895	rs7226363	C	T	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	15343524	rs71150251	C	CCTT	5067.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr17	15406123	rs71974269	CCTCT	C	1399.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.429;QD=38.88;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr17	15406442	rs139005045	G	C	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	15468718	rs200463402	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr17	15468765	.	CA	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-5.477;QD=1.75;ReadPosRankSum=-0.076;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:81,33:0.29:114
chr17	15492409	rs151442	T	C	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.68;QD=31.10;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	15492426	rs28445278	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.74;QD=29.81;SOR=1.877;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	15508447	rs2190757	C	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.352;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.540;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-5.647;QD=1.00;ReadPosRankSum=1.569;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:72,11:0.13:83
chr17	15602900	rs2601942	T	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr17	15602950	rs12449956	G	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr17	15603021	rs12452845	T	C	1655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=11.705;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-7.188;QD=16.90;ReadPosRankSum=3.020;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:53,45:0.46:98
chr17	15603031	rs12450403	G	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=11.364;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-7.756;QD=15.68;ReadPosRankSum=3.193;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:59,43:0.42:102
chr17	15603114	rs62071712	G	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.312;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=21.364;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-6.294;QD=0.47;ReadPosRankSum=-3.407;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:64,8:0.11:72
chr17	15604395	rs77257979	TG	CA	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	15604444	rs4792655	A	G	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	15607777	rs62071718	A	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	15611495	rs3760299	T	C	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	15613021	rs2654397	C	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	15613114	rs142143149	AT	A	205.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	15620647	rs61435333	G	A	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.26;QD=28.80;SOR=2.483;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	15639007	rs201255243	C	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.42;QD=28.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	15640647	rs199719997	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.83;MQRankSum=-1.645;QD=6.95;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr17	15640815	rs201215351	A	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.53;QD=26.31;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	15643381	rs58354673	CA	C	5519.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:7,260:0.97:267
chr17	15644506	rs11650318	C	T	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	15645289	rs17855672	G	A	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	15668330	rs2955833	G	C	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	15668720	rs935147	C	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	15668775	rs1814454	A	G	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	15690210	rs376068178	AC	A	857.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.90;QD=30.63;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	16011493	rs35417050	CA	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.179;QD=3.02;ReadPosRankSum=-0.242;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr17	16052606	rs34511605	CAT	C	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,9:0.19:47
chr17	16221271	rs56228407	A	AC	1558.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	16251859	rs2286666	A	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	16256240	rs3095172	C	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	16256663	.	C	CGGCCGCGGA	505.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.90;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	16256686	.	G	GCGGAGGCCC	501.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=50.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	16323589	rs4273076	C	A	8580.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	16323608	rs68189233	ATAGT	A	7631.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	16325968	rs8121	A	G	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	16326005	rs1129235	A	C	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	16326253	rs7225104	G	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	16331820	rs4792742	T	C	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	16335191	rs34786363	C	A	10804.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=6.758;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.01;ReadPosRankSum=0.932;SOR=0.417;set=HC	GT:AD:AF:DP	1/1:2,398:0.99:400
chr17	16336828	rs7213055	G	A	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	16336992	rs14039	C	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	16340316	rs7214366	A	C	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	16340405	rs7215836	T	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	16342813	rs4072454	T	C	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	16344314	rs55710649	A	ACT	9778.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	16344600	rs4617905	TG	CC	10093.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	16344875	rs9251	C	T	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.61;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	16346932	rs4792745	G	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	16347567	rs4438345	T	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	16350156	rs1009237	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	16350239	rs2882581	A	G	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=33.13;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	16351592	rs2351084	T	C	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	16537082	rs17791901	A	G	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	16593798	rs2349265	C	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.46;QD=25.67;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	16624049	.	T	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=46.99;MQRankSum=-8.846;QD=4.57;ReadPosRankSum=-0.393;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:91,37:0.29:128
chr17	16842798	.	C	T	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=12.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=1.554;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:73,46:0.39:119
chr17	16852379	.	T	TA	978.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:15,53:0.78:68
chr17	16855878	rs8072293	C	T	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	16892265	rs9907308	G	A	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	16892334	rs57096150	C	T	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	17118689	rs34311146	G	A	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	17122286	rs8065572	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	17247985	rs7212012	G	A	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	17394611	rs1242489	G	A	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	17409401	rs3816511	G	A	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	17409560	rs7946	C	T	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	17409709	rs1918249	T	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	17412032	rs4646407	G	C	7454.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	17425631	rs897453	C	T	4829.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	17480195	rs2124344	A	G	10160.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	17682484	rs1006656	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	17697093	rs371983878	CCAG	C	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=5.071;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-1.072;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:221,27:0.11:248
chr17	17698254	rs8067439	G	A	12949.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr17	17707105	rs3818717	T	C	9714.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr17	17715317	rs2297508	C	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	17719503	.	G	GCCCCCCAACCCCCCCACCCCCGCCACCCCACACCCCTGCCACCCCCCAGCCCCACCCCCCCACCCCCAATCCCCCCACCCTCCCCACTCCCGCCAT	1836.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.470;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=183.67;ReadPosRankSum=0.825;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:4,6:0.60:10
chr17	17721457	rs4925115	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	17726965	rs12936927	C	T	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	17740164	rs60282872	GC	G	5463.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=35.25;SOR=2.028;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	17750907	rs7501812	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	17767526	rs34383547	A	AT	389.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr17	17770355	rs11657074	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	17772622	rs34879782	G	GA	729.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=2.186;QD=8.69;ReadPosRankSum=0.116;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:30,54:0.64:84
chr17	17774118	rs9907287	C	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	17910464	.	A	AGGCGGGGCGGGCGGAGCATGTCGGGGAAGGGCTGGATGGAGTTGGACTGGGTGGGGAAGGGGCGGAGATGGGGCGGGGCGGGGGGGGGGGAGCTGGGAGGGAGGGGAGG	3732.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.263;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=235.511;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.62;ReadPosRankSum=8.299;SOR=7.475;set=HC	GT:AD:AF:DP	1/1:81,84:0.51:165
chr17	17931884	.	C	CA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.752;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr17	17948475	rs2955355	G	A	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	17957348	rs17731766	G	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	17997209	rs2230316	G	A	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	18003671	rs2272570	T	G	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	18003845	rs854813	C	T	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr17	18024308	rs376451611	C	T	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	18034131	.	A	AGTGTGT	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=40;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.61;ReadPosRankSum=-0.230;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr17	18041507	rs2280777	C	T	9031.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	18042276	rs2075658	A	C	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	18042527	rs854783	A	G	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	18042976	rs854782	C	A	2092.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	18043766	rs854780	C	G	9565.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr17	18044270	rs854779	T	C	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	18046058	rs854778	A	C	5735.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	18046898	rs854777	T	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	18047671	rs11421905	G	GC	1342.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	18047772	rs11421904	T	TC	5173.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	18051975	rs854774	T	C	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	18052466	rs4303606	A	G	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	18052867	rs2955379	T	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	18054868	rs854773	G	T	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:7,255:0.97:262
chr17	18054917	rs865923	T	C	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	18055229	rs854772	G	A	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr17	18057167	rs712270	A	T	8692.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.101;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=26.66;ReadPosRankSum=1.934;SOR=0.305;set=HC	GT:AD:AF:DP	1/1:1,325:1.00:326
chr17	18057272	rs712271	A	G	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.07;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	18058521	rs712272	C	T	11906.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	18059494	rs861278	C	T	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	18060192	rs854771	G	A	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	18062443	rs854807	G	A	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	18063441	rs712273	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	18070761	rs854796	G	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	18077175	rs854800	T	C	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	18111802	rs142135062	GTTTTTGT	G	5395.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	18111868	rs1378602	G	A	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	18133495	rs2290502	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	18135753	rs2290503	T	C	7066.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	18137141	rs2290505	A	G	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	18139896	rs2746028	G	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	18149854	rs2856289	A	G	10509.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr17	18150444	.	AC	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.020;QD=1.34;ReadPosRankSum=-0.718;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr17	18156541	rs2071241	A	G	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	18164644	rs72831943	T	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	18167397	rs3889402	G	T	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	18167505	rs2605143	T	C	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	18167684	rs12603700	G	A	8258.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	18188884	rs2294914	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	18194362	rs6502645	C	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	18208334	rs7225932	C	A	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr17	18219340	rs145526189	C	G	8711.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	18219511	rs151245523	G	A	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	18220770	rs1563632	G	A	4954.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	18252010	rs3866955	T	C	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	18256979	rs2273026	C	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	18259333	rs142013082	CAT	C	3521.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	18259415	rs12950117	A	G	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	18284262	rs570145	G	A	7318.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	18286916	rs112094897	A	AG	2855.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	18286922	rs111736884	A	AG	2999.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	18286930	rs200680358	A	AG	2966.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	18286938	rs145486982	A	AG	2751.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	18291432	rs140944304	TCACAGC	T	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	18291456	rs578670	C	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	18291470	rs586214	C	G	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	18291544	rs586322	A	G	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	18291559	rs9890369	T	C	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	18291618	rs586757	C	T	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr17	18314830	rs62074236	T	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	18314964	rs62074238	T	G	5295.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:476,297:0.38:773
chr17	18315107	rs113907775	C	CCT	8362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.361;ClippingRankSum=0.000;DB;DP=943;ExcessHet=3.0103;FS=7.095;MLEAC=1;MLEAF=0.500;MQ=51.36;MQRankSum=-3.785;QD=9.44;ReadPosRankSum=-0.712;SOR=1.239;set=HC	GT:AD:AF:DP	0/1:629,257:0.29:886
chr17	18315147	rs377082374	C	G	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.427;ClippingRankSum=0.000;DB;DP=894;ExcessHet=3.0103;FS=35.235;MLEAC=1;MLEAF=0.500;MQ=47.81;MQRankSum=-15.067;QD=1.44;ReadPosRankSum=-0.520;SOR=4.503;set=HC	GT:AD:AF:DP	0/1:766,127:0.14:893
chr17	18380135	rs4924879	C	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:98,69:0.41:167
chr17	18380154	rs1682220	A	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:101,75:0.43:176
chr17	18380260	rs77759205	C	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr17	18498059	rs66528329	C	CA	931.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.20;QD=35.84;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	18498497	rs59933375	G	GA	1726.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.62;MQRankSum=-0.557;QD=17.10;ReadPosRankSum=-0.660;SOR=0.489;set=HC	GT:AD:AF:DP	1/1:10,91:0.90:101
chr17	18528623	rs34925025	A	G	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	18541296	rs2386412	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.16;QD=28.62;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	18541775	rs9902086	A	G	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	18541852	.	ACCCAC	A,AGATGGTGCCCAC	4753.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=90;set=Intersection	GT:AF:DP	1/1:1.00:88
chr17	18541857	.	C	CGATGGTG	4753.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.33;QD=54.02;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	18541868	rs55807264	A	G	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	18542074	rs9908833	G	A	7357.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	18542432	rs201342024	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.00;QD=29.45;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	18542519	rs74452761	T	G	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.285;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.500;MQ=47.15;MQRankSum=-1.281;QD=10.24;ReadPosRankSum=-0.054;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:52,51:0.50:103
chr17	18544287	rs200036130	T	A	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=16.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	18544321	rs200831553	G	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	18544520	rs201807927	G	A	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.82;QD=30.74;SOR=3.486;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	18565143	rs55636053	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	18565350	rs9912644	G	C	7379.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr17	18565423	rs9912852	G	A	8132.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	18574794	rs201620470	C	T	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.47;QD=31.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	18574872	rs146810330	G	T	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.96;QD=27.06;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	18574998	rs9635701	A	T	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	18575127	rs9635680	G	A	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.35;QD=43.64;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	18575140	rs9635681	A	G	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.80;QD=43.39;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	18575675	rs55797270	T	G	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr17	18576256	rs4924901	G	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.92;QD=28.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	18602353	rs187062037	C	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	18602370	.	C	A	1454.77	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	18602476	rs1969051	A	G	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	18610134	rs1973459	T	G	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	18630995	rs8075739	G	A	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	18638151	rs9916065	A	G	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	18643642	rs150131079	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	18647539	rs116483657	G	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.17;QD=31.13;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	18647625	rs74502778	T	A	5671.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.64;QD=27.94;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	18653070	rs9895749	G	A	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	18670278	rs4611519	A	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.38;QD=31.72;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	18671733	rs10775382	C	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	18678548	rs4630608	C	T	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	18684487	rs59588820	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	18684642	rs75174617	G	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	18694277	rs61075345	G	A	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	18700843	rs115776459	C	A	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	18702094	rs2270139	A	G	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	18702220	rs8080471	T	C	8867.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	18708830	rs55974180	G	GT,GTT	4334.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.960;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.52;MQRankSum=-0.456;QD=17.84;ReadPosRankSum=1.252;SOR=0.576;set=HC	GT:AD:AF:DP	1/2:20,178,45:0.73,0.19:243
chr17	18769349	rs2386404	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	18770733	rs2305064	G	A	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	18775900	rs4393623	A	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	18776020	rs7503678	A	T	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr17	18793061	rs3803835	C	T	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	18793225	rs3826380	A	G	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	18814661	rs55971101	T	TTA	1918.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:3,77:0.96:80
chr17	18833810	rs1634411	C	T	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	18882991	rs2472714	T	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	18916893	rs11652575	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	18918258	rs28526726	C	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	18918510	.	A	ACGGTACGGGGGTGGGGGC	771.73	.	AC=2;AF=1.00;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	18923818	rs1624825	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	19213335	rs2296981	C	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	19216917	rs3826405	T	C	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	19231898	rs7206963	T	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	19232078	rs6587220	T	C	8316.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	19233096	rs2296979	T	C	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	19237613	rs11656071	C	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	19240972	rs11652712	G	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	19247075	rs4924987	G	A	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	19265797	rs10445411	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.24;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	19452711	rs2453572	TA	CG	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	19454575	rs2247518	A	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	19454725	rs2247437	G	C	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	19454733	rs2247436	G	A	7632.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.64;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	19458777	rs2440149	G	C	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	19460972	rs1054715	G	A	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	19476588	rs2250486	T	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	19535920	rs28672254	C	A	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	19552476	rs4646793	C	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	19555976	rs1004491	T	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	19559623	rs2072332	G	A	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	19561011	rs3841513	GACTGAATT	G	7953.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	19568486	rs59755039	CT	C	1939.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	19578873	rs7216	A	T	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	19595540	rs11313767	CA	C	440.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=2.354;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr17	19608773	rs4925042	G	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	19609947	rs12942065	C	G	6731.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	19610104	rs35263947	C	T	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	19617236	rs4924792	G	T	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	19617393	rs9900497	G	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	19642952	rs2228100	G	C	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	19643789	rs141568499	T	G	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	19645938	rs887241	A	C	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	19648214	.	G	GC	152.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=25.49;ReadPosRankSum=0.210;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr17	19648219	rs56234923	T	C	161.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=27.00;ReadPosRankSum=-0.210;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr17	19651482	rs2072327	T	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	19699358	rs192511	T	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	19699605	rs10587010	CAT	C	1184.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr17	19713740	rs150122	C	T	6633.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	19729313	.	A	AT	240.75	.	AC=2;AF=1.00;ALERT;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	19729314	.	A	AAATAAATAAAT	412.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	19729495	rs157397	T	C	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	19749952	rs140413803	CA	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.730;QD=1.83;ReadPosRankSum=0.245;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr17	20107773	rs2703805	T	C	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	20108239	rs2703806	A	T	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	20109189	rs2703807	C	T	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	20157027	.	G	A	164.84	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	20163529	rs2703791	A	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	20209474	rs2120282	C	T	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	20261101	rs111285254	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	20370735	rs4985833	T	C	63.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.46;QD=21.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	20370767	rs4985834	G	C	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=22.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	20435963	.	T	TGA	15911.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.668;ClippingRankSum=0.000;DP=431;ExcessHet=3.0103;FS=33.972;MLEAC=2;MLEAF=1.000;MQ=47.31;MQRankSum=5.808;QD=39.78;ReadPosRankSum=-2.742;SOR=0.139;set=HC	GT:AD:AF:DP	1/1:11,389:0.97:400
chr17	20436054	.	G	GAGA	3193.73	.	AC=2;AF=1.00;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	20459595	rs57570943	A	C,G	1595.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=62;set=Intersection	GT:AF:DP	1/2:0.16,0.84:62
chr17	20459624	rs143635700	TTGGCTG	T	227.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr17	20459649	rs111556302	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-3.286;QD=7.04;ReadPosRankSum=-2.072;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr17	20768691	rs75640454	CA	TG	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-12.686;QD=2.32;ReadPosRankSum=-2.255;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:151,21:0.12:172
chr17	20768788	rs78365129	G	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.032;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-13.220;QD=0.95;ReadPosRankSum=-0.661;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:290,28:0.09:318
chr17	20768803	rs76135364	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.657;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-13.261;QD=1.87;ReadPosRankSum=-2.172;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:274,34:0.11:308
chr17	20768816	rs73298040	C	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.800;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-13.088;QD=2.45;ReadPosRankSum=-2.663;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:256,37:0.13:293
chr17	20768839	rs372665136	GA	G	716.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-9.330;QD=3.53;ReadPosRankSum=-0.832;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:168,35:0.17:203
chr17	20768850	rs114103783	G	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.850;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-10.344;QD=2.70;ReadPosRankSum=2.923;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:177,26:0.13:203
chr17	20768867	rs9906896	A	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:123,37:0.23:160
chr17	20768928	rs141057464	AAT	A	604.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr17	20768931	rs76382049	A	G	612.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr17	20796694	rs191643107	A	G	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.50;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	20799119	rs2279263	A	G	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	20906240	.	C	T	845.77	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	20906251	rs4985956	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	20906257	rs4985957	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.90;SOR=5.486;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	20908081	rs66644145	CTAGTGGAGCTGCGGGCAGCCAA	C	2885.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=44.40;SOR=3.293;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	20908325	rs9797279	T	C	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	20911173	rs2291034	G	T	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	20916022	rs17770614	A	C	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	20916035	rs4985962	A	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	20916362	rs719093	G	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	20919334	rs7213684	T	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.05;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	20919337	rs7207753	G	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.29;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	20921492	rs1038107	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	20924523	rs2291037	G	A	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	20924620	rs899342	T	C	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	20945874	rs10579510	GCA	G	3012.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	20945887	rs4985967	G	A	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	21075183	rs12936069	G	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	21087671	rs3744226	C	T	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	21117589	rs3744223	C	A	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	21117837	rs4985988	T	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	21147404	rs897926	A	G	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	21156530	rs201190568	G	GC	991.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	21194658	.	T	TACAACACAACACAACACAAC,TCACAACACAAC	4887.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=102;set=Intersection	GT:AF:DP	1/1:1.00:87
chr17	21194769	rs72840055	C	T	3035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=5.242;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=-3.245;QD=11.08;ReadPosRankSum=-0.662;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:187,87:0.32:274
chr17	21194771	rs114473529	A	T	3119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=5.261;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=-3.003;QD=11.60;ReadPosRankSum=-0.783;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:183,86:0.32:269
chr17	21194785	rs72840057	T	C	3076.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:180,85:0.32:265
chr17	21194820	rs66503560	G	A	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:156,73:0.32:229
chr17	21194843	rs75693966	T	C	2219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=1.236;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:127,58:0.31:185
chr17	21194852	rs72840058	G	A	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-0.529;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:107,56:0.34:163
chr17	21194859	rs62056394	G	A	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-0.445;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:103,53:0.34:156
chr17	21198972	rs2363221	T	C	2568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.320;QD=21.06;ReadPosRankSum=0.129;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:56,66:0.54:122
chr17	21198978	rs2363220	C	T	2677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.305;QD=20.60;ReadPosRankSum=-0.136;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:59,71:0.55:130
chr17	21199022	rs35804189	A	T	5147.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:109,131:0.55:240
chr17	21199037	rs2885719	G	A	5757.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:121,160:0.57:281
chr17	21199083	rs4442881	T	A	4383.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:140,199:0.59:339
chr17	21199105	rs3035435	AG	A	4730.73	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:135,185:0.58:320
chr17	21199236	rs2363219	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr17	21199275	rs2363218	G	T	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.760;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=5.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=-1.238;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:51,52:0.50:103
chr17	21199275	.	GTG	TTA	1835	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=2;MGOF=18;MMLQ=28;MQ=59.76;NF=19;NR=24;PP=1835;QD=43.9178575549;SC=CAGGGTCTCTGTGCAGAGCTT;SbPval=0.22;Source=Platypus;TC=93;TCF=33;TCR=60;TR=43;WE=21199285;WS=21199265;set=Platypus	GT:AD:AF:DP	0/1:50,43:0.46:93
chr17	21199277	rs2363217	G	A	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.898;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=-1.499;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:51,54:0.51:105
chr17	21199376	rs5819736	G	GT	1050.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=7.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=0.223;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:83,72:0.46:155
chr17	21199390	rs4997717	C	T	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.207;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:85,74:0.47:159
chr17	21199403	rs4997718	C	T	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.514;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:78,74:0.49:152
chr17	21199499	rs2885718	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr17	21199515	rs5025581	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr17	21201579	rs11651154	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr17	21201719	rs8076154	T	C	7747.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:393,366:0.48:759
chr17	21201851	rs8072386	A	G	6059.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:317,286:0.47:603
chr17	21201884	rs2305875	T	C	6686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=2.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=2.596;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:223,184:0.45:407
chr17	21201890	rs8072401	A	G	6623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.742;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.05;ReadPosRankSum=2.780;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:199,168:0.46:367
chr17	21201894	rs8071865	C	T	6399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.060;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=5.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.98;ReadPosRankSum=2.852;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:192,164:0.46:356
chr17	21201907	rs2305874	G	A	5152.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:135,130:0.49:265
chr17	21202056	rs34676150	G	A	2861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.695;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=3.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-0.773;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:121,75:0.38:196
chr17	21202063	rs77850849	G	C	3235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.019;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=5.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-0.408;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:133,82:0.38:215
chr17	21202067	rs76764437	A	G	3482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=6.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=-1.200;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:136,89:0.40:225
chr17	21202078	rs35477472	G	A	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:165,108:0.40:273
chr17	21202102	rs35701021	C	T	5049.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:234,155:0.40:389
chr17	21202170	rs200630765	G	A	13338.77	.	AC=1;AF=0.500;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	0/1:490,362:0.42:852
chr17	21202191	rs33911218	C	A	14752.77	.	AC=1;AF=0.500;AN=2;DB;DP=1018;set=Intersection	GT:AD:AF:DP	0/1:580,433:0.43:1013
chr17	21202237	rs36047035	G	C	9094.77	.	AC=1;AF=0.500;AN=2;DB;DP=1038;set=Intersection	GT:AD:AF:DP	0/1:586,448:0.43:1034
chr17	21202272	rs34880480	C	G	7161.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:443,342:0.44:785
chr17	21202310	rs77343934	GC	AT	8158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=2.572;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=0.853;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:261,213:0.45:474
chr17	21202316	rs78463537	T	C	7843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.548;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=0.677;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:241,200:0.45:441
chr17	21202318	rs77591777	G	T	7666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=0.407;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:235,198:0.46:433
chr17	21202370	rs34794731	G	A	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:78,80:0.51:158
chr17	21202382	rs35763451	TG	T	2420.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,64:0.49:130
chr17	21203689	rs71207220	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr17	21203711	rs73311537	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr17	21203820	rs78304829	G	C	3410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=1.301;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:137,91:0.40:228
chr17	21203825	rs75854955	C	G	3551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=0.444;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:140,99:0.41:239
chr17	21203893	rs34105301	T	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:175,124:0.41:299
chr17	21203934	rs62057672	G	A	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:144,98:0.40:242
chr17	21203949	rs62057673	C	T	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:133,86:0.39:219
chr17	21203998	rs62057674	G	A	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:90,73:0.45:163
chr17	21204153	rs66883103	C	T	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:136,115:0.46:251
chr17	21204187	rs56067280	G	T	6442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.632;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=1.097;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:237,171:0.42:408
chr17	21204192	rs56216806	C	T	6553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.445;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=0.733;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:252,186:0.42:438
chr17	21204210	rs55796947	C	T	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:296,239:0.45:535
chr17	21204257	rs56166328	G	A	13860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=785;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.75;ReadPosRankSum=0.841;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:415,366:0.47:781
chr17	21204266	rs2230435	T	C	14334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=0.429;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:420,386:0.48:806
chr17	21204308	rs55777930	G	T	15433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=-0.353;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:411,417:0.50:828
chr17	21204314	.	TTG	T	15252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;ClippingRankSum=0.000;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=1.612;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:422,391:0.48:813
chr17	21204318	.	A	ACG	14924.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DP=794;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.87;ReadPosRankSum=2.022;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:410,381:0.48:791
chr17	21204428	rs36191822	G	T	4638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=-0.495;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:152,129:0.46:281
chr17	21204437	rs76549047	T	C	4362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.81;ReadPosRankSum=-1.166;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:122,110:0.47:232
chr17	21204441	rs78162711	T	C	3980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.930;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=-1.149;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:114,103:0.47:217
chr17	21205352	rs66761201	CGGA	C	2052.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=6.293;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.593;QD=14.98;ReadPosRankSum=1.676;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:85,52:0.38:137
chr17	21205354	.	GA	AG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=25;MMLQ=18;MQ=60.16;NF=38;NR=9;PP=2944;QD=20;SC=GCACACGTCGGAGAGGGGGCT;SbPval=0.89;Source=Platypus;TC=164;TCF=118;TCR=46;TR=47;WE=21205371;WS=21205344;set=Platypus	GT:AD:AF:DP	1/0:117,47:0.29:164
chr17	21205358	.	GGGGGCT	G	2980	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=4;HapScore=1;MGOF=25;MMLQ=18;MQ=60.22;NF=17;NR=13;PP=2980;QD=20;SC=ACGTCGGAGAGGGGGCTGGGG;SbPval=0.69;Source=Platypus;TC=105;TCF=55;TCR=50;TR=30;WE=21205371;WS=21205344;set=Platypus	GT:AD:AF:DP	1/0:75,30:0.29:105
chr17	21205360	rs74998514	G	A	2121.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.524;QD=14.34;ReadPosRankSum=0.744;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:90,58:0.39:148
chr17	21205361	rs67557217	GGCT	G	2112.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.844;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.565;QD=13.99;ReadPosRankSum=0.925;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:93,58:0.38:151
chr17	21205396	rs75974715	C	A	3085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=4.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=-0.644;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:117,85:0.42:202
chr17	21205406	rs72831582	A	G	3158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=4.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=-0.297;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:124,87:0.41:211
chr17	21205460	rs62057721	C	T	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:169,146:0.46:315
chr17	21205592	rs66644302	GGC	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.153;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=42.877;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.636;QD=0.41;ReadPosRankSum=0.013;SOR=3.704;set=HC	GT:AD:AF:DP	0/1:137,20:0.13:157
chr17	21205604	rs62057722	T	C	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.734;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=28.101;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.182;QD=4.72;ReadPosRankSum=-2.007;SOR=2.151;set=HC	GT:AD:AF:DP	0/1:117,25:0.18:142
chr17	21205642	rs62057723	T	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:77,15:0.16:92
chr17	21205654	rs72831585	AT	GA	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	0/1:66,10:0.13:76
chr17	21206269	rs73982750	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr17	21206294	rs73311581	C	T	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr17	21206360	rs67280439	A	G	4885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=-0.719;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:139,127:0.48:266
chr17	21206372	rs72838545	G	C	5623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=2.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=-1.001;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:154,143:0.48:297
chr17	21206385	rs72838547	C	T	5550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=3.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=-0.098;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:170,153:0.47:323
chr17	21206440	rs3744222	C	T	5151.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:195,244:0.56:439
chr17	21206444	rs62057728	A	G	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:243,206:0.46:449
chr17	21206556	rs736103	C	T	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:164,142:0.46:306
chr17	21206616	rs57761454	G	A	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,70:0.49:142
chr17	21206632	rs35678520	C	T	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.745;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=-1.230;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:56,53:0.49:109
chr17	21206635	rs77285979	T	A	1944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.483;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=0.053;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:56,44:0.44:100
chr17	21206642	rs59259996	G	A	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=0.996;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:50,36:0.42:86
chr17	21206654	rs56821097	G	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr17	21207602	rs55677712	C	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr17	21207649	rs56342308	C	T	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:63,67:0.52:130
chr17	21207813	rs74575904	T	G	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=6.698;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=5.741;QD=2.64;ReadPosRankSum=1.075;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:451,69:0.13:520
chr17	21207835	rs76111309	G	A	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=4.906;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=5.230;QD=3.51;ReadPosRankSum=2.368;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:390,72:0.16:462
chr17	21207844	rs2230436	C	T	3808.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:242,190:0.44:432
chr17	21207909	rs41301807	G	A	3072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.295;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.767;QD=15.76;ReadPosRankSum=1.117;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:71,124:0.64:195
chr17	21207916	rs7209761	A	G	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=41.94;SOR=2.217;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	21207938	rs75147012	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=9.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.122;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:96,32:0.25:128
chr17	21207945	rs9896440	A	G	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,76:0.69:110
chr17	21208292	rs7214432	T	C	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:134,71:0.35:205
chr17	21208317	rs4456559	G	A	4258.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:125,185:0.60:310
chr17	21208347	rs4559960	C	A	2062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-1.910;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:303,123:0.29:426
chr17	21208349	rs7209860	C	G	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:295,137:0.32:432
chr17	21208413	rs1657695	C	T	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.500;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:344,140:0.29:484
chr17	21208449	rs1657694	G	T	3882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.671;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=0.650;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:255,115:0.31:370
chr17	21208456	rs1657693	A	G	3917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.105;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:238,112:0.32:350
chr17	21208640	rs7209152	G	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr17	21215434	rs113634008	A	AC	1460.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:121,65:0.35:186
chr17	21215446	rs62055363	C	T	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:138,77:0.36:215
chr17	21215483	rs55935757	C	T	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:217,143:0.40:360
chr17	21215537	rs55736474	C	A	5241.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:409,268:0.40:677
chr17	21215552	rs56369732	C	T	11179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=1.735;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:458,300:0.40:758
chr17	21215557	rs35206134	G	A	11453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=0.228;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:452,315:0.41:767
chr17	21215637	rs66486636	G	A	8482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=0.836;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:347,235:0.40:582
chr17	21215643	rs73302034	A	G	8162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=0.520;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:317,220:0.41:537
chr17	21215682	rs73302038	G	A	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:172,112:0.39:284
chr17	21215700	rs73302043	T	G	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:121,85:0.41:206
chr17	21216661	rs4994551	C	T	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=11.672;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.208;QD=14.96;ReadPosRankSum=-1.116;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr17	21216664	rs4081986	A	G	1303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.478;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=8.359;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.276;QD=14.49;ReadPosRankSum=-0.389;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:55,35:0.39:90
chr17	21216686	rs4994549	C	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:89,61:0.41:150
chr17	21216710	rs4994548	T	C	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:151,108:0.42:259
chr17	21216758	rs5819747	G	GCTTC	6560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.235;QD=15.26;ReadPosRankSum=1.269;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:259,171:0.40:430
chr17	21216788	rs1673840	C	T	4359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.671;QD=8.34;ReadPosRankSum=-0.765;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:304,219:0.42:523
chr17	21216846	rs1657688	G	C	2968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.675;QD=8.11;ReadPosRankSum=-2.186;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:213,153:0.42:366
chr17	21216951	rs1673839	C	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:62,22:0.26:84
chr17	21216964	rs1657686	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	21217239	rs4114291	G	A	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.832;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=0.461;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr17	21217258	rs4114290	A	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr17	21217290	rs1673837	G	A	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:85,49:0.37:134
chr17	21217397	rs1657685	A	G	6463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.781;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=-1.738;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:274,182:0.40:456
chr17	21217400	rs1622401	G	A	6444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.715;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=-1.748;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:280,191:0.41:471
chr17	21217411	rs1657684	T	C	4330.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:296,213:0.42:509
chr17	21217513	rs2363198	G	A	6228.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:299,302:0.50:601
chr17	21217547	rs2363197	T	C	8069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.97;ReadPosRankSum=2.029;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:229,220:0.49:449
chr17	21217554	rs2363196	C	T	7798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=2.247;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:204,199:0.49:403
chr17	21217566	rs2363375	C	T	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:183,188:0.51:371
chr17	21217586	rs2363374	G	T	5447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=-0.668;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:138,150:0.52:288
chr17	21217596	rs2363373	C	G	4901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.77;ReadPosRankSum=-0.694;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:121,127:0.51:248
chr17	21318521	rs76804083	C	T	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr17	21318546	rs112960185	A	G	2552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.199;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=4.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=1.246;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:138,69:0.33:207
chr17	21318552	rs112854769	G	A	2750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.474;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=5.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=1.831;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:159,74:0.32:233
chr17	21318555	rs58462457	C	T	1961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.100;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.888;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:156,91:0.37:247
chr17	21318569	rs74584621	C	T	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:205,121:0.37:326
chr17	21318586	rs59891808	G	C	11722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.66;ReadPosRankSum=0.906;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:126,283:0.69:409
chr17	21318586	.	GTCTCTGTTG	CTCTCTGTTC,CTGTCTGTTG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=51;MMLQ=28;MQ=59.96;NF=94,100;NR=39,42;PP=273,2944;QD=2.45464567566;SC=ACATGCTGTCGTCTCTGTTGC;SbPval=0.46;Source=Platypus;TC=407;TCF=291;TCR=116;TR=133,142;WE=21318611;WS=21318576;set=Platypus	GT:AF:DP	0/1:0.33:407
chr17	21318588	rs77791524	C	G	5678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-0.653;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:272,153:0.36:425
chr17	21318595	rs58780973	G	C	5146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.223;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=1.388;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:318,156:0.33:474
chr17	21318603	rs79809401	C	T	6588.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:333,190:0.36:523
chr17	21318629	rs58862472	C	A	5804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.715;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:245,256:0.51:501
chr17	21318663	rs72846666	G	A	7460.77	.	AC=1;AF=0.500;AN=2;DB;DP=1070;set=Intersection	GT:AD:AF:DP	0/1:681,384:0.36:1065
chr17	21318698	rs1657738	C	T	4758.77	.	AC=1;AF=0.500;AN=2;DB;DP=1312;set=Intersection	GT:AD:AF:DP	0/1:968,320:0.25:1288
chr17	21318770	rs3752033	G	A	16910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;ClippingRankSum=0.000;DB;DP=1454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=0.980;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:972,477:0.33:1449
chr17	21318773	rs3752034	G	A	16915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=1458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=1.031;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:977,476:0.33:1453
chr17	21318782	rs78117732	G	A	9458.77	.	AC=1;AF=0.500;AN=2;DB;DP=1506;set=Intersection	GT:AD:AF:DP	0/1:979,518:0.35:1497
chr17	21318867	rs73979893	G	A	7575.77	.	AC=1;AF=0.500;AN=2;DB;DP=1284;set=Intersection	GT:AD:AF:DP	0/1:862,416:0.33:1278
chr17	21318897	rs1657739	G	C	7023.77	.	AC=1;AF=0.500;AN=2;DB;DP=1173;set=Intersection	GT:AD:AF:DP	0/1:800,369:0.32:1169
chr17	21318912	rs35011501	C	A	9791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.195;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=1.657;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:791,322:0.29:1113
chr17	21318918	rs79626424	G	A	9433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DB;DP=1107;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=2.550;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:793,303:0.28:1096
chr17	21318948	rs112314728	C	T	8747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=1016;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.026;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:745,266:0.26:1011
chr17	21318951	rs75757803	C	T	8709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.236;ClippingRankSum=0.000;DB;DP=995;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.039;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:732,258:0.26:990
chr17	21318952	rs8076599	A	G	17598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=991;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.83;ReadPosRankSum=0.080;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:408,579:0.59:987
chr17	21318969	rs79666990	C	T	7727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=965;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.066;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:727,233:0.24:960
chr17	21318981	rs9909970	C	T	6754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=912;ExcessHet=3.0103;FS=2.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=-0.390;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:693,214:0.24:907
chr17	21319007	rs1657740	G	A	5292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.623;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:499,279:0.36:778
chr17	21319007	.	GG	AC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=2;MGOF=35;MMLQ=24;MQ=60.0;NF=116;NR=139;PP=2944;QD=20;SC=GCTGAGGGCCGGGGCCGCACA;SbPval=0.61;Source=Platypus;TC=770;TCF=363;TCR=407;TR=255;WE=21319016;WS=21318997;set=Platypus	GT:AD:AF:DP	1/0:515,255:0.33:770
chr17	21319008	rs1657741	G	C	12619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=2.644;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:398,382:0.49:780
chr17	21319069	rs76265595	G	A	5917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=838;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-2.386;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:643,193:0.23:836
chr17	21319079	rs76518282	C	A	6245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=835;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-1.251;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:642,192:0.23:834
chr17	21319087	rs75029097	G	A	6349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.172;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:640,193:0.23:833
chr17	21319110	rs77283567	G	A	5802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;ClippingRankSum=0.000;DB;DP=818;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=1.634;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:624,194:0.24:818
chr17	21319121	rs1714864	C	T	5430.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:524,276:0.34:800
chr17	21319171	rs73313922	G	A	4124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.374;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:637,245:0.28:882
chr17	21319208	rs73979896	C	T	4479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.061;ClippingRankSum=0.000;DB;DP=955;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.673;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:687,267:0.28:954
chr17	21319230	rs1657742	G	C	5269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=986;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-1.085;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:695,290:0.29:985
chr17	21319251	rs73313923	C	T	8864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=1000;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=2.132;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:720,278:0.28:998
chr17	21319272	rs73313926	C	T	9632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=1060;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.213;QD=9.10;ReadPosRankSum=1.744;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:775,284:0.27:1059
chr17	21319285	rs72846667	C	T	8781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=1069;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.275;QD=8.23;ReadPosRankSum=2.356;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:796,271:0.25:1067
chr17	21319302	rs1657743	T	C	20261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.789;ClippingRankSum=0.000;DB;DP=1113;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.903;QD=18.24;ReadPosRankSum=-0.724;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:466,645:0.58:1111
chr17	21319311	rs72846668	C	T	4515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.680;ClippingRankSum=0.000;DB;DP=1111;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.295;QD=4.08;ReadPosRankSum=-1.533;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:822,286:0.26:1108
chr17	21319369	rs77048459	G	A	9087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DB;DP=1247;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=1.184;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:945,300:0.24:1245
chr17	21319392	rs73979899	G	A	9868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DB;DP=1296;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=2.063;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:989,304:0.24:1293
chr17	21319399	rs4985866	A	G	8325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=1303;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-1.314;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:847,453:0.35:1300
chr17	21319407	rs16962951	C	T	9265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=1294;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-2.570;QD=7.18;ReadPosRankSum=2.700;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:991,300:0.23:1291
chr17	21319436	rs77270326	G	A	8515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DB;DP=1186;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-7.572;QD=7.20;ReadPosRankSum=1.566;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:915,268:0.23:1183
chr17	21319439	rs76684759	T	G	8545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=1185;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-8.210;QD=7.24;ReadPosRankSum=0.995;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:912,269:0.23:1181
chr17	21319452	rs73313929	G	A	7193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=1100;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-9.060;QD=6.56;ReadPosRankSum=1.698;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:864,232:0.21:1096
chr17	21319465	.	T	C	6644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.065;ClippingRankSum=0.000;DP=1034;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-10.342;QD=6.45;ReadPosRankSum=-0.351;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:814,216:0.21:1030
chr17	21319470	.	T	C	6250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DP=978;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-10.797;QD=6.41;ReadPosRankSum=-0.259;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:778,197:0.20:975
chr17	21319473	rs1657744	G	A	6967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=4.211;QD=7.39;ReadPosRankSum=2.277;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:593,350:0.37:943
chr17	21319488	rs77176173	C	T	5034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=841;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-12.102;QD=6.01;ReadPosRankSum=-2.981;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:671,167:0.20:838
chr17	21319519	rs78113532	G	C	3137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.998;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-12.205;QD=4.94;ReadPosRankSum=-2.507;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:525,110:0.17:635
chr17	21319523	rs77987694	C	T	3151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.956;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=1.499;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-12.675;QD=5.03;ReadPosRankSum=-3.244;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:513,113:0.18:626
chr17	21319527	rs80022364	C	T	3039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.990;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-13.276;QD=5.04;ReadPosRankSum=-2.027;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:501,102:0.17:603
chr17	21319543	rs80335301	G	A	2338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.165;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-13.436;QD=4.22;ReadPosRankSum=0.206;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:466,88:0.16:554
chr17	21319560	rs74801394	G	T	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-13.378;QD=3.89;ReadPosRankSum=1.016;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:407,79:0.16:486
chr17	21319650	.	CGAG	C	3464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DP=496;ExcessHet=3.0103;FS=2.109;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-9.715;QD=7.33;ReadPosRankSum=-0.156;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:362,111:0.23:473
chr17	21319682	rs80203231	C	T	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-12.331;QD=3.54;ReadPosRankSum=1.078;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:362,116:0.24:478
chr17	21319716	rs78135255	G	A	3692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-12.980;QD=8.26;ReadPosRankSum=1.185;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:331,116:0.26:447
chr17	21319728	rs76681424	T	C	3576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-13.127;QD=8.42;ReadPosRankSum=0.711;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:316,109:0.26:425
chr17	21319743	rs76267885	A	G	3297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-13.010;QD=8.27;ReadPosRankSum=0.145;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:298,101:0.25:399
chr17	21319767	rs1612176	C	T	4467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.000;QD=18.46;ReadPosRankSum=-1.172;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:114,128:0.53:242
chr17	21319785	rs1657745	C	T	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:175,105:0.38:280
chr17	21319786	rs78547883	G	A	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=3.193;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-7.253;QD=7.38;ReadPosRankSum=-0.571;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:214,66:0.24:280
chr17	21319845	rs72846670	C	T	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.798;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=5.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-0.738;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:125,37:0.23:162
chr17	21319860	rs2917720	C	A	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=5.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-0.773;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:104,35:0.25:139
chr17	21319868	rs73979902	G	T	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=8.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=0.048;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:100,32:0.24:132
chr17	21319908	rs66981137	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:73,32:0.30:105
chr17	21319943	rs5021699	A	G	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.459;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.261;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=7.00;ReadPosRankSum=-2.614;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chr17	21319955	rs76506689	G	A	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=14.11;ReadPosRankSum=1.420;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:48,29:0.38:77
chr17	21319977	rs34762677	A	G	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=17.18;ReadPosRankSum=-0.326;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:33,28:0.46:61
chr17	21319989	rs5021700	C	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=22.74;ReadPosRankSum=0.657;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr17	21319993	rs5021701	T	C	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=28.00;ReadPosRankSum=-0.210;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chr17	21320008	rs78435971	C	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.726;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=15.97;ReadPosRankSum=1.157;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr17	21320012	rs77515828	C	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.775;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=15.39;ReadPosRankSum=0.926;SOR=1.748;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr17	21320025	rs5021702	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr17	21535972	rs10221228	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:58,13:0.18:71
chr17	21535979	rs113145914	TCA	T	384.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:69,15:0.18:84
chr17	21536022	rs9325913	T	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.586;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=10.723;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-10.552;QD=1.53;ReadPosRankSum=0.283;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:154,26:0.14:180
chr17	21536065	rs9325914	A	G	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.128;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=25.312;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-13.999;QD=1.67;ReadPosRankSum=-1.049;SOR=2.190;set=HC	GT:AD:AF:DP	0/1:224,46:0.17:270
chr17	21536106	rs9325915	T	C	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:234,87:0.27:321
chr17	21536168	rs9325916	G	A	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=15.292;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-9.185;QD=6.38;ReadPosRankSum=5.365;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:135,75:0.36:210
chr17	21544462	rs9285742	G	A	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-1.383;QD=18.03;ReadPosRankSum=0.176;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr17	21544470	rs9285743	A	G	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=6.690;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-1.383;QD=18.17;ReadPosRankSum=1.291;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr17	21544587	rs9285744	A	G	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.263;QD=11.38;ReadPosRankSum=-0.877;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:42,52:0.55:94
chr17	21544646	rs9285745	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr17	21544674	rs9747056	T	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr17	21730703	rs72842072	G	A	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	21731656	rs1985718	C	T	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	21826256	rs9989450	A	G	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	22066776	rs75644031	T	C	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-13.856;QD=2.07;ReadPosRankSum=-0.257;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:209,28:0.12:237
chr17	22066780	rs78507742	C	T	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-13.820;QD=2.12;ReadPosRankSum=-0.083;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:217,30:0.12:247
chr17	22066807	rs78727354	G	T	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=4.250;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-14.836;QD=2.35;ReadPosRankSum=0.499;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:237,36:0.13:273
chr17	22066822	rs137955476	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=5.439;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-14.109;QD=3.05;ReadPosRankSum=1.714;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:221,36:0.14:257
chr17	22066835	rs147079852	C	T	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=5.472;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-13.883;QD=3.24;ReadPosRankSum=1.518;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:213,36:0.14:249
chr17	22066856	rs138169151	CAG	C	744.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-13.129;QD=4.03;ReadPosRankSum=0.646;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:156,29:0.16:185
chr17	22066870	rs79914182	G	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-12.291;QD=2.66;ReadPosRankSum=1.341;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:140,24:0.15:164
chr17	25628820	rs6561	T	C	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	25630388	rs2270761	T	C	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	25636954	rs11080131	T	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	25639104	rs11305587	CT	C	853.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	25753033	rs13341669	T	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-10.201;QD=1.43;ReadPosRankSum=0.459;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:134,29:0.18:163
chr17	25887530	rs2945397	G	C	6908.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	25887541	rs2948526	C	T	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	25887571	rs61054489	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=2.242;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:165,33:0.17:198
chr17	25909816	rs2293180	C	T	6992.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:76,304:0.80:380
chr17	25909850	rs2293181	G	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=3.875;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:425,74:0.15:499
chr17	25912828	rs2945373	A	G	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	25915281	rs62057826	C	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:19,77:0.80:96
chr17	25917810	rs1403321	A	G	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	25929036	rs4332787	A	G	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:35,131:0.79:166
chr17	25930725	rs2241904	G	A	2275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.01;ReadPosRankSum=-0.455;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:11,54:0.83:65
chr17	25930730	rs2241905	T	C	2445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.76;ReadPosRankSum=-0.470;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:13,64:0.83:77
chr17	25932940	rs11433820	A	AT	5174.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:29,159:0.85:188
chr17	25935104	rs2289569	G	A	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:17,97:0.85:114
chr17	25944235	rs4267373	A	G	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	25950175	rs2241906	C	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr17	25950220	rs1075952	G	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:17,63:0.79:80
chr17	25972311	rs2304886	C	T	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=49.56;MQRankSum=-4.710;QD=0.89;ReadPosRankSum=1.468;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:342,58:0.14:400
chr17	25974545	rs4794976	T	G	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:22,101:0.82:123
chr17	25974600	rs113216780	A	AATTATT	1190.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr17	25982119	rs4795843	T	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:18,73:0.80:91
chr17	26073050	rs138929274	T	G	469.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.42;MQRankSum=-1.478;QD=19.57;ReadPosRankSum=2.564;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr17	26073136	rs142859551	T	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.38;QD=23.66;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	26080008	rs4796027	G	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:114,51:0.31:165
chr17	26087027	rs142423584	T	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.464;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr17	26088337	rs59685746	GC	G	141.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	26092631	rs1060822	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.104;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr17	26096597	rs2297518	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-1.177;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr17	26100321	rs2248814	A	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.270;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr17	26105932	rs1137933	G	A	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.598;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:519,112:0.18:631
chr17	26108040	rs2297520	T	C	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.101;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:248,59:0.19:307
chr17	26116848	rs8072199	C	T	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	26206414	rs3751972	C	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	26574820	rs61141479	G	A	7591.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:65,310:0.83:375
chr17	26575380	rs2292633	G	A	5288.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:27,212:0.89:239
chr17	26633347	rs35679432	T	TG	1626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.41;MQRankSum=1.238;QD=31.90;ReadPosRankSum=-0.453;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:8,43:0.84:51
chr17	26633350	rs74318769	T	G	1635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.058;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.10;MQRankSum=1.057;QD=33.38;ReadPosRankSum=-0.433;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:8,41:0.84:49
chr17	26646434	rs5819836	G	GC	4734.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	26669245	rs5819838	A	AG	2913.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	26684181	rs9916226	T	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.268;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr17	26684283	rs11314852	GT	G	5057.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	26684390	rs11448856	G	GC	3649.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	26684394	rs17856014	T	G	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	26684449	rs4795429	G	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	26684529	rs113967755	G	GGC	849.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	26687484	rs11379368	G	GC	1967.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	26687898	rs11382918	G	GC	2195.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	26691321	rs9910163	A	G	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr17	26691760	rs2277668	G	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.174;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:71,15:0.17:86
chr17	26692224	rs11387886	A	AG	15743.73	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	26694483	rs2227728	A	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.129;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:151,37:0.20:188
chr17	26694661	rs2227726	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=1.488;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:121,18:0.13:139
chr17	26695704	rs2227725	A	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	26695832	rs2071379	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-0.017;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:237,37:0.14:274
chr17	26696477	rs2071378	A	G	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=4.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.359;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:326,50:0.13:376
chr17	26696482	rs2071377	C	T	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=5.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.711;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:324,51:0.14:375
chr17	26699121	rs7212814	G	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	26699195	rs11437592	C	CG	1068.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	26699199	rs112387743	G	GC	1068.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	26699205	rs11340312	GA	G	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	26699367	rs11437594	G	GC	2107.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	26708298	.	A	AGC	10301.73	.	AC=2;AF=1.00;AN=2;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	26708302	.	GGT	G	10334.73	.	AC=2;AF=1.00;AN=2;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	26708550	rs11658194	TC	CG	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	26727721	rs5819844	GA	G	1318.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	26729428	rs4795436	C	T	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	26818676	rs9890678	T	C	14477.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr17	26850810	rs10527420	TTCTCTCTCTCTCTCTC	T	3271.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.01;QD=41.41;SOR=2.617;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	26850929	rs483434	A	C	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	26851501	rs614434	G	A	13962.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr17	26922308	.	AGT	A	81	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=25;MQ=58.43;NF=1;NR=3;PP=81;QD=22.0;SC=TATAAAGATGAGTGTGTGTGT;SbPval=0.81;Source=Platypus;TC=20;TCF=7;TCR=13;TR=4;WE=26922317;WS=26922298;set=Platypus	GT:AD:AF:DP	1/0:16,4:0.20:20
chr17	26988101	.	TAA	T	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.877;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr17	27000391	rs9904043	A	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	27001722	rs117156193	C	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr17	27002402	rs9892089	A	G	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	27004703	rs7207976	C	A	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	27009749	rs12051648	C	T	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	27014942	.	CT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.266;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr17	27028030	rs62640050	A	C	14261.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:172,603:0.78:775
chr17	27052841	rs78594991	T	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.711;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:97,21:0.18:118
chr17	27053568	rs12952249	G	A	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	27061704	.	C	CA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.807;QD=1.17;ReadPosRankSum=-1.754;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:73,19:0.21:92
chr17	27093542	rs9900141	G	A	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	27183732	.	CTT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.296;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr17	27185827	rs2242345	C	T	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	27187636	rs9279	G	T	8183.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr17	27188296	rs28448745	A	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	27213076	rs148675708	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=7.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.270;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr17	27225937	rs4795473	C	T	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	27246368	rs68042462	CCTCCCCTCCTTGATCCTAACATT	C	2333.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	27332778	rs150464937	C	T	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.17;ReadPosRankSum=0.435;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:13,67:0.84:80
chr17	27401176	rs1049848	G	C	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:44,157:0.78:201
chr17	27413908	rs4795495	C	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr17	27425132	rs71369700	C	T	7062.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:58,270:0.82:328
chr17	27437134	rs2279958	A	G	4099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.89;ReadPosRankSum=-0.711;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:44,173:0.80:217
chr17	27437208	rs2279959	A	G	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:18,68:0.79:86
chr17	27437710	rs1994663	C	G	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:24,77:0.76:101
chr17	27438469	rs8076604	G	A	3638.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:37,149:0.80:186
chr17	27441077	rs12601535	C	G	6992.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:56,294:0.84:350
chr17	27443631	rs144361514	G	GCACACACACACACACA	884.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr17	27446571	rs11349517	AT	A	367.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=1.421;QD=8.55;ReadPosRankSum=1.541;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr17	27449059	rs877492	C	A	5043.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:41,200:0.83:241
chr17	27455707	rs55939148	AC	A	1193.74	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:3,39:0.93:42
chr17	27455736	rs8075284	A	G	779.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=-0.156;SOR=1.993;set=HC	GT:AD:AF:DP	0/1:3,27:0.90:30
chr17	27456255	rs11080078	G	C	957.53	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:4,40:0.91:44
chr17	27492869	rs6505113	A	G	3147.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:20,119:0.86:139
chr17	27613677	rs12452857	G	A	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.987;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:220,49:0.18:269
chr17	27829588	rs367720840	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=1.250;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:99,23:0.19:122
chr17	27835138	rs508706	C	T	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	27857698	rs536327	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.463;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.795;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr17	27861004	rs12945584	A	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr17	27869968	rs507577	G	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.492;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:319,67:0.17:386
chr17	27889578	rs539307	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=4.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.871;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:132,24:0.15:156
chr17	27889986	rs542939	T	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.379;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:266,58:0.18:324
chr17	27893015	rs2292973	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.759;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=1.450;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:87,19:0.18:106
chr17	27893893	rs62070806	C	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.459;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chr17	27895679	.	C	CGG	731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.712;QD=36.59;ReadPosRankSum=-1.352;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr17	27895683	.	C	CGCGGG	731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=61.72;MQRankSum=1.021;QD=31.81;ReadPosRankSum=-1.144;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr17	27898828	rs565977	T	C	13203.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr17	27901537	rs35948647	C	CA	1002.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr17	27901975	rs550818	A	G	9894.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr17	27904322	rs601364	A	G	9568.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	27904617	rs2278217	C	A	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.840;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:302,74:0.20:376
chr17	27904711	rs11080105	G	A	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.855;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:402,82:0.17:484
chr17	27905673	rs563976	A	G	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	27910706	rs2303623	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=11.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.150;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr17	27938424	rs11080107	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr17	27949934	rs77991986	G	GC	668.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	28011501	rs11307211	TA	T	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-1.500;SOR=1.332;set=HC	GT:AD:AF:DP	0/1:27,34:0.56:61
chr17	28029938	rs3102560	T	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.564;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:78,17:0.18:95
chr17	28120851	rs2617882	A	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:15,62:0.81:77
chr17	28268800	rs4567782	A	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-0.831;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:91,16:0.15:107
chr17	28296327	rs9897794	T	G	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.621;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:192,46:0.19:238
chr17	28320248	rs4795524	T	A	8465.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	28323499	rs12944395	A	G	529.22	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr17	28378276	rs11653805	C	T	5770.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:56,241:0.81:297
chr17	28381141	rs4074170	C	G	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:19,82:0.81:101
chr17	28386526	rs4075623	A	G	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:18,93:0.84:111
chr17	28400079	.	A	AT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.087;QD=0.33;ReadPosRankSum=-0.644;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:142,28:0.16:170
chr17	28407287	rs11080114	C	T	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:27,154:0.85:181
chr17	28407876	rs7221743	T	G	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-2.007;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:14,45:0.76:59
chr17	28410124	rs12941382	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:12,49:0.80:61
chr17	28417376	rs8065059	T	C	995.96	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,34:0.89:38
chr17	28499499	rs3764450	T	A	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,60:0.78:77
chr17	28511978	rs1979572	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=1.372;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:196,33:0.14:229
chr17	28549898	rs6354	G	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.400;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:163,37:0.18:200
chr17	28549978	rs25528	G	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.708;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:44,8:0.15:52
chr17	28773060	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-1.421;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr17	28776659	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-2.376;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:239,39:0.14:278
chr17	28778720	rs2253256	G	C	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	28811658	rs5819903	G	GT	1351.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:4,68:0.94:72
chr17	28890203	rs216455	T	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	28900708	rs3764416	G	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	28901151	rs11080128	G	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	28960991	.	CT	C	540.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=4.694;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=1.056;QD=5.01;ReadPosRankSum=3.140;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:48,60:0.56:108
chr17	28961292	rs200446900	T	A	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.661;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.25;MQRankSum=-1.943;QD=23.81;ReadPosRankSum=1.807;SOR=3.145;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr17	29061870	rs35104688	CAAGT	C	3786.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:27,93:0.78:120
chr17	29096006	rs62070634	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=4.704;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.096;QD=1.19;ReadPosRankSum=0.337;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:164,33:0.17:197
chr17	29111368	rs11867457	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.920;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:188,28:0.13:216
chr17	29206408	.	A	AT	886.73	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr17	29206421	rs6505216	G	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.518;QD=1.40;ReadPosRankSum=0.283;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:82,24:0.23:106
chr17	29221227	rs9898911	A	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	29226630	rs28539246	T	A	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.865;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.715;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr17	29226652	rs9897628	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:43,13:0.23:56
chr17	29227650	rs35683926	C	G	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr17	29482878	rs2269855	G	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	29486152	rs2952976	G	A	6904.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	29496819	rs2905807	C	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	29508775	rs1801052	G	A	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	29508819	rs71142032	A	AT	610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.860;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr17	29509791	rs2953000	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	29545987	rs67472948	A	AT	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	29546175	rs2905880	T	C	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	29553336	rs141114572	G	GAC	757.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr17	29646032	rs1129506	G	A	9557.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:1,353:1.00:354
chr17	29647361	.	T	TA	561.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=8.051;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.766;QD=6.46;ReadPosRankSum=-1.099;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:41,46:0.53:87
chr17	29653293	rs9894648	T	C	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	29654876	rs2285894	T	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	29663624	rs7406038	TT	AA	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=-1.317;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:13,54:0.81:67
chr17	29670190	rs7405740	C	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	29675971	rs2525569	T	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	29677680	rs17879371	A	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr17	29679246	rs964288	G	A	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	29684553	rs7350943	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	29705947	rs2525574	T	C	9390.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr17	29815385	rs57391434	G	T	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	29815404	rs8075239	T	G	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	29849129	rs75048991	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.287;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr17	29849479	rs60594701	C	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.655;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:255,52:0.17:307
chr17	29852092	rs2023795	A	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.140;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:81,23:0.22:104
chr17	29857460	rs61731602	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.196;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr17	30183663	rs71142094	G	GC	609.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr17	30183857	rs8068049	T	C	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:13,84:0.87:97
chr17	30185565	rs9906443	G	A	1023.89	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:4,35:0.90:39
chr17	30185892	rs11542477	A	G	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:18,93:0.84:111
chr17	30228656	rs2074101	G	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.094;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=1.523;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:144,37:0.20:181
chr17	30315287	rs530209	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.645;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.977;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:85,14:0.14:99
chr17	30320860	rs55811201	C	CT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.223;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:133,31:0.19:164
chr17	30321567	rs1557731	T	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.807;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:151,27:0.15:178
chr17	30321762	rs473356	G	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.261;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:151,30:0.17:181
chr17	30322881	rs504887	T	A	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=10.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.550;SOR=0.015;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr17	30376932	rs1843083	C	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-3.329;QD=1.17;ReadPosRankSum=-0.264;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr17	30377162	rs16967101	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-1.248;QD=0.73;ReadPosRankSum=-1.318;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:181,31:0.15:212
chr17	30469423	rs13342625	C	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr17	30469470	.	CCCGCCGCCGCCGCCGCCG	CCCG,C	948.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=38;set=Intersection	GT:AF:DP	1/1:1.00:23
chr17	30470028	rs149838766	G	GC	1930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.238;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:742,138:0.16:880
chr17	30509939	rs6505286	C	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	30519351	.	CTT	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.862;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr17	30533970	rs16967164	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.600;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:78,15:0.16:93
chr17	30593336	rs9889253	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.140;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr17	30643361	rs2344973	A	G	1591.79	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:7,60:0.90:67
chr17	30659006	rs1019152	T	A	876.18	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,33:0.92:36
chr17	30795913	rs369788458	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.671;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr17	30822034	rs9889257	C	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.441;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:125,34:0.21:159
chr17	30980972	rs2249638	G	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:16,93:0.85:109
chr17	31039255	rs11080184	T	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	31065456	rs76645480	A	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-1.634;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:118,20:0.14:138
chr17	31072453	rs6505311	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	31075754	rs76575795	G	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=1.145;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr17	31082747	rs4548927	T	C	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	31107845	rs10512439	A	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	31260255	rs29019	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=4.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.238;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:136,23:0.14:159
chr17	31261463	rs29015	T	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.390;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:58,11:0.16:69
chr17	31261490	rs9915765	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.000;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:45,8:0.15:53
chr17	31266419	rs2726134	T	C	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.479;QD=6.40;ReadPosRankSum=-0.630;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:157,38:0.19:195
chr17	31266438	.	A	AAGG	1646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=4.930;QD=5.82;ReadPosRankSum=0.679;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:228,55:0.19:283
chr17	31319024	rs2188953	A	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.513;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:109,15:0.12:124
chr17	31319033	rs3922357	G	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.291;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:96,14:0.13:110
chr17	31319160	rs2346391	T	C	609.79	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr17	31323728	rs140981292	A	AG	2380.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	31324077	rs28904	C	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.827;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.797;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr17	31324657	rs28958	T	C	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=5.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.216;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:182,50:0.22:232
chr17	31355227	rs58042873	A	AG	1200.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	31438905	rs9916605	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:49,16:0.25:65
chr17	32483237	rs2228990	A	G	5015.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:35,218:0.86:253
chr17	32483270	rs2228989	C	G	5653.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:42,230:0.85:272
chr17	32583132	rs2857657	G	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.075;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr17	32583269	rs4586	T	C	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.054;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.988;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:288,50:0.15:338
chr17	32583911	rs13900	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.779;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:321,60:0.16:381
chr17	32684991	rs2072069	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	32688712	rs159271	T	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	32904480	rs887231	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=1.595;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:179,28:0.14:207
chr17	32908064	rs4795938	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=1.756;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:204,32:0.14:236
chr17	32908210	rs7218304	T	C	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-1.407;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:66,18:0.21:84
chr17	32908217	rs7212426	G	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.509;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr17	32965275	.	AC	A	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.401;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr17	32965285	rs28442132	C	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.901;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:76,13:0.15:89
chr17	33269648	rs2230553	C	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	33288363	rs9635769	C	T	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	33288882	rs931196	T	G	10596.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	33307586	rs12945428	G	A	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	33307700	rs57311484	GC	G	2122.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	33309982	.	CTT	C,CT	2811.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.254;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=4.959;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.424;QD=12.72;ReadPosRankSum=1.953;SOR=1.041;set=HC	GT:AD:AF:DP	1/2:29,54,138:0.24,0.62:221
chr17	33330150	rs4796030	A	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	33331575	rs1052536	C	T	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	33332177	rs1003918	G	A	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	33332629	rs12948362	G	A	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	33341834	rs2074519	T	C	6290.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	33353332	rs3926358	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	33440597	rs146793849	T	C	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:15,110:0.88:125
chr17	33463568	rs3736143	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr17	33464864	rs7215209	C	T	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr17	33469279	rs1471615	G	C	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	33476001	rs16970659	G	A	9639.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:85,428:0.83:513
chr17	33478185	rs4796042	C	G	1199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.919;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=-0.777;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:7,55:0.89:62
chr17	33501432	rs1384220	C	T	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:8,47:0.85:55
chr17	33503119	rs4795063	T	C	4379.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:39,195:0.83:234
chr17	33504809	rs4795065	C	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.26;ReadPosRankSum=-1.026;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr17	33513649	rs3744366	A	G	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:17,66:0.80:83
chr17	33591987	rs11080334	T	G	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.124;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:349,77:0.18:426
chr17	33592591	rs11651240	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=1.166;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:214,41:0.16:255
chr17	33679943	rs79638520	C	T	5261.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:46,227:0.83:273
chr17	33680508	rs146981586	C	T	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.872;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.89;MQRankSum=-0.389;QD=23.41;ReadPosRankSum=0.098;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:9,47:0.84:56
chr17	33680840	rs28571667	T	C	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	33687416	rs938298	C	T	2560.88	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:12,102:0.89:114
chr17	33689926	rs4796077	T	C	14182.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr17	33690466	rs12453150	C	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.179;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:284,43:0.13:327
chr17	33690863	rs4796078	G	T	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	33748870	rs17548916	C	G	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:15,84:0.85:99
chr17	33748939	rs2671817	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-2.623;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:219,33:0.13:252
chr17	33749546	rs2586514	A	G	9369.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr17	33749919	rs1849733	A	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-1.940;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:489,92:0.16:581
chr17	33768199	rs1822403	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.061;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:248,39:0.14:287
chr17	33768354	rs3744371	C	T	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	33768383	rs11657183	T	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,65:0.73:89
chr17	33772550	rs76192030	C	T	13244.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr17	33802156	rs3744372	T	G	4565.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:51,189:0.79:240
chr17	33805150	rs2304968	T	C	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	33805180	rs2304967	G	C	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:45,134:0.75:179
chr17	33806332	rs8066132	C	T	4232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.24;ReadPosRankSum=-0.982;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:42,178:0.81:220
chr17	33806812	rs12451876	C	T	7561.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:52,308:0.86:360
chr17	33806863	rs12451746	G	A	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-2.007;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:308,67:0.18:375
chr17	33807250	rs9905892	T	A	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	33814735	rs10626701	G	GAA	12903.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	33875262	rs8073060	T	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=5.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=1.808;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:148,37:0.20:185
chr17	33879670	rs71366453	C	CAT	417.19	.	AC=1;AF=0.500;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.72;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:0,10:1.00:10
chr17	33879678	.	T	TATAC	629	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=3;MGOF=10;MMLQ=28;MQ=62.0;NF=10;NR=2;PP=629;QD=54.4166666667;SC=CACATATATATACACATATAT;SbPval=0.52;Source=Platypus;TC=14;TCF=12;TCR=2;TR=12;WE=33879690;WS=33879668;set=Platypus	GT:AD:AF:DP	0/1:2,12:0.86:14
chr17	33879682	.	C	T	373	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=3;MGOF=10;MMLQ=28;MQ=61.6;NF=11;NR=2;PP=373;QD=31.3670163498;SC=TATATATACACATATATATAC;SbPval=0.68;Source=Platypus;TC=17;TCF=14;TCR=3;TR=13;WE=33879690;WS=33879668;set=Platypus	GT:AD:AF:DP	0/1:4,13:0.76:17
chr17	33879682	rs71366454	C	CAT	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=61.88;MQRankSum=0.952;QD=30.57;ReadPosRankSum=2.361;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr17	33881631	rs321612	T	C	6309.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:59,278:0.82:337
chr17	33881718	rs321613	G	A	6768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.065;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.486;QD=30.35;ReadPosRankSum=-0.574;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:41,182:0.82:223
chr17	33881734	rs321614	A	G	6056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=8.655;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.502;QD=33.28;ReadPosRankSum=-0.446;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:35,147:0.81:182
chr17	33881769	rs10578465	TAAA	T	1332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.728;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.467;QD=27.20;ReadPosRankSum=-0.238;SOR=1.444;set=HC	GT:AD:AF:DP	0/1:5,44:0.90:49
chr17	33921160	rs225305	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	33933006	rs225284	A	C	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:11,53:0.83:64
chr17	33963611	rs11345348	AT	A	1506.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	33968871	rs225270	A	T	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	33998802	rs1049379	G	C	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:17,74:0.81:91
chr17	34072898	rs12602590	C	T	6619.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:64,262:0.80:326
chr17	34077232	rs11654604	G	A	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.612;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:519,131:0.20:650
chr17	34077428	rs11650416	A	C	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.953;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.006;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:142,39:0.22:181
chr17	34090916	.	A	AAAAT,AAAATAAATAAATAAAT	1100.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=28;set=Intersection	GT:AF:DP	1/2:0.68,0.28:25
chr17	34090958	rs4796106	C	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr17	34091078	rs4795087	C	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=6.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.108;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr17	34097039	rs3826404	T	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.455;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:88,20:0.19:108
chr17	34100350	rs58543174	G	GC	13799.73	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	34147533	.	C	CT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.707;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr17	34171827	rs4251786	C	T	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=0.347;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:18,64:0.78:82
chr17	34182341	rs2306630	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.20;ReadPosRankSum=0.877;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:257,36:0.12:293
chr17	34183956	rs78655848	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=1.438;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:72,16:0.18:88
chr17	34183983	rs77598005	AG	A	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.009;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr17	34185535	rs35283303	AG	A	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-1.124;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:119,21:0.15:140
chr17	34191406	rs2291299	T	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.306;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:86,25:0.23:111
chr17	34251452	rs4796137	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,17:0.25:67
chr17	34257313	rs9907295	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.576;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:98,21:0.18:119
chr17	34261831	rs9754	A	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.356;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:257,47:0.15:304
chr17	34261981	rs10562162	TGCTA	T	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.490;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:278,46:0.14:324
chr17	34264859	rs2280783	A	G	4413.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:53,194:0.79:247
chr17	34310702	rs41341749	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	34324928	rs41439447	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	34325248	rs41356845	G	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	34325532	rs2075746	T	C	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	34328461	rs854625	A	G	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	34340161	rs1734953	T	A	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	34416665	rs1719133	A	G	8973.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	34431287	rs1049750	G	T	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	34431961	rs1719146	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.08;QD=27.69;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	34848874	rs2306589	T	C	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	34854280	rs2306590	G	A	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	34855110	.	G	GT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.920;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr17	34865131	rs17560870	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	34866546	rs2306593	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	34867415	rs34476742	A	AGT	1959.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	34869150	rs6607296	C	A	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	34916879	rs8068351	T	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	34935878	rs2074103	C	A	6881.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	34942595	rs1106908	G	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.24;SOR=2.265;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	34943347	rs11367622	CT	C	370.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-0.288;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr17	34943719	rs3744593	C	T	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	34951327	rs2285639	C	T	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	34956585	rs377424786	CCA	C	1220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.597;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:224,46:0.17:270
chr17	35294340	.	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.526;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr17	35300494	.	G	GA	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.121;QD=2.67;ReadPosRankSum=-0.892;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:86,35:0.29:121
chr17	35346641	rs1045056	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.070;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr17	35478362	rs1470452	T	C	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	35486486	rs9789070	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	35549275	rs2305099	T	C	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	35550158	rs12603097	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	35550179	rs12603098	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	35550448	rs2305097	C	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	35557289	rs11659129	C	T	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:16,127:0.89:143
chr17	35562546	rs2278679	C	T	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	35581887	rs144469510	TTA	T	839.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:60,38:0.39:98
chr17	35608781	rs72010031	CCT	C	2631.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	35608889	rs1519091	G	A	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	35609746	rs2252757	G	A	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	35632979	rs2542660	C	A	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	35696804	rs58654829	G	A	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.31;QD=41.29;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	35696820	rs147333574	AAAAG	A	1851.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	35771468	rs7211875	C	T	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:16,105:0.87:121
chr17	35783565	rs8067120	C	T	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:20,64:0.76:84
chr17	35818592	rs9897879	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr17	35818739	.	TTGTGTG	T	201	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=3;HapScore=1;MGOF=10;MMLQ=22;MQ=59.39;NF=0;NR=9;PP=201;QD=22.6666666667;SC=GATTATTGTTTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=39;TCF=3;TCR=36;TR=9;WE=35818752;WS=35818729;set=Platypus	GT:AD:AF:DP	1/0:30,9:0.23:39
chr17	35818740	.	TG	T	89.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.850;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr17	35818741	rs4795202	G	T	215.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=0.461;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr17	35818742	.	TG	T	89.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.770;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr17	35825459	rs142934801	TA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=3.587;QD=1.75;ReadPosRankSum=0.205;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:59,23:0.28:82
chr17	35899141	rs1034686	T	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.227;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:101,19:0.16:120
chr17	35902225	rs3110623	C	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.323;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:99,24:0.20:123
chr17	35936594	rs11654048	T	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	35937793	rs33979367	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=1.534;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr17	35956263	rs4795207	T	C	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	35979715	.	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.490;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr17	35981285	rs34337635	A	G	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-0.513;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:218,60:0.22:278
chr17	35984410	rs7216445	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr17	35988672	rs7224513	C	T	4469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=-1.349;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:44,192:0.81:236
chr17	35995638	rs4622555	T	A	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	36003275	rs3813911	T	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	36003359	rs3813910	A	G	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	36047275	rs1800929	CG	TT	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;JOINED;set=Intersection	GT:AD:AF:DP	0/1:30,121:0.80:151
chr17	36061297	rs2074429	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr17	36233930	rs2677184	G	A	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	36234106	rs2677185	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	36352408	rs11407739	G	GT,GTT	6288.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.440;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=4.509;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.17;MQRankSum=1.046;QD=17.18;ReadPosRankSum=-1.823;SOR=0.483;set=HC	GT:AD:AF:DP	1/2:39,266,61:0.73,0.17:366
chr17	36352489	rs4796259	A	C	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:104,103:0.50:207
chr17	36352537	rs62074773	A	G	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.35;QD=31.63;SOR=6.630;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	36352572	rs62074774	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.91;QD=31.42;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	36353560	rs111638343	C	T	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.01;QD=30.71;SOR=1.946;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	36353761	rs62074778	C	T	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:171,190:0.53:361
chr17	36357280	rs149632022	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-7.943;QD=0.13;ReadPosRankSum=-0.490;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:270,55:0.17:325
chr17	36357295	rs79239780	A	G	2375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=10.008;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-0.217;QD=7.18;ReadPosRankSum=0.650;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:186,145:0.44:331
chr17	36357835	rs1848308	G	A	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:134,134:0.50:268
chr17	36358189	rs5820175	GATATATATATAT	G,GATATATATAT	2734.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=3.245;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.25;MQRankSum=-1.896;QD=21.70;ReadPosRankSum=1.916;SOR=0.537;set=HC	GT:AD:AF:DP	1/2:8,92,26:0.73,0.21:126
chr17	36358847	rs77355093	T	A	24920.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	1/1:1,887:1.00:888
chr17	36361992	rs201942294	C	T	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:84,73:0.46:157
chr17	36374963	rs11389346	TA	T	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.820;QD=8.35;ReadPosRankSum=0.882;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:28,68:0.71:96
chr17	36384810	rs142086381	A	G	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-1.148;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:47,46:0.49:93
chr17	36384868	rs71252892	C	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:83,60:0.42:143
chr17	36398156	rs147730015	ACACACACACC	A	2401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-0.917;QD=8.03;ReadPosRankSum=5.596;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:179,120:0.40:299
chr17	36483522	rs62073368	G	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.501;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=0.649;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:191,50:0.21:241
chr17	36584628	.	G	GGGC	129	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	36584681	rs9912941	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=-1.273;QD=12.65;ReadPosRankSum=-2.220;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr17	36617210	rs9898977	A	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.645;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:398,72:0.15:470
chr17	36622482	rs8075324	G	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.284;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:580,98:0.14:678
chr17	36623602	rs8065549	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.673;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:353,56:0.14:409
chr17	36642473	rs71138626	CT	C	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.009;QD=9.11;ReadPosRankSum=-0.707;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:21,48:0.70:69
chr17	36646291	rs12937928	A	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-1.694;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:134,37:0.22:171
chr17	36646386	rs9891156	A	G	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	36666551	rs62074752	T	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	36699322	rs2502364	A	G	7769.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:70,342:0.83:412
chr17	36700163	rs35262222	C	T	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:32,155:0.83:187
chr17	36700376	rs2502363	C	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr17	36707305	rs2471622	T	C	1296.78	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:7,55:0.89:62
chr17	36708648	rs35447171	A	C	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:23,84:0.79:107
chr17	36718610	rs6503709	T	A	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	36720590	.	AC	A	227	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=13;HapScore=4;MGOF=11;MMLQ=18;MQ=60.0;NF=0;NR=6;PP=227;QD=38.8333333333;SC=AAGGATGAGCACCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=6;WE=36720606;WS=36720580;set=Platypus	GT:AD:AF:DP	1/0:4,6:0.60:10
chr17	36720598	rs117581201	C	T	65.78	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr17	36724309	rs12948141	C	T	275.56	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr17	36731049	rs55707518	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.082;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr17	36731195	rs56118590	T	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr17	36734700	rs7503695	T	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr17	36734706	rs144253512	CAGCCGG	C	826.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=3.567;QD=7.52;ReadPosRankSum=2.075;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:83,27:0.25:110
chr17	36861983	rs17855918	T	C	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	36889466	rs5820264	G	GCCTGC	15243.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:1,314:1.00:315
chr17	36894839	rs1138349	G	A	6540.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:66,276:0.81:342
chr17	36895206	rs2075056	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr17	36896751	rs56171152	G	A	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	36908985	rs78060524	TGAA	T	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.317;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr17	36909061	rs228274	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	36909499	rs4907	A	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.11;ReadPosRankSum=-0.431;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:387,56:0.13:443
chr17	36912109	rs146716075	TACTA	T	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.893;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:59,9:0.13:68
chr17	36918551	rs228280	G	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr17	36927690	rs25540	C	CTAAG	1626.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	36932200	rs228293	C	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	36932891	rs228294	A	G	941.22	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=-0.361;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr17	36934124	rs2075061	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.975;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr17	36934475	rs7207178	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr17	36993655	rs645686	T	C	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	36997288	rs595306	T	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	36997503	rs61752602	T	C	5457.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:52,232:0.82:284
chr17	37010150	rs923370	G	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	37054772	rs1130638	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.16;ReadPosRankSum=-0.820;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:566,79:0.12:645
chr17	37054884	rs2286883	A	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=6.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-3.080;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:269,51:0.16:320
chr17	37054966	rs78076914	C	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=2.082;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:215,40:0.16:255
chr17	37055077	rs17590541	G	A	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:22,105:0.83:127
chr17	37070658	rs525989	A	G	649.78	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr17	37070737	rs525767	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr17	37071189	rs2241009	C	T	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.67;ReadPosRankSum=1.620;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:12,59:0.83:71
chr17	37075161	.	A	C	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;ClippingRankSum=0.000;DP=961;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.449;QD=0.73;ReadPosRankSum=0.104;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:818,136:0.14:954
chr17	37075286	rs144614922	A	AGGGCGAGGCCCGTGG	18897.73	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr17	37076331	rs646097	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.037;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr17	37101380	rs9906595	T	C	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	37228765	rs9907595	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-0.253;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr17	37234111	rs3744078	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr17	37239671	rs9891236	A	G	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	37253316	rs4795349	G	A	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	37265378	rs16490	C	T	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	37317672	rs511163	C	G	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	37331645	rs199798694	C	A	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=3.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.665;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:463,88:0.16:551
chr17	37349710	rs16532	C	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.665;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:707,110:0.13:817
chr17	37351403	rs2240083	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	37357653	.	C	CT	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.443;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:129,41:0.24:170
chr17	37359427	.	A	ATTT	729.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.612;QD=20.85;ReadPosRankSum=0.822;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr17	37369416	rs1859262	G	A	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	37371519	rs11078892	T	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	37396201	rs34473775	G	T	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	37399364	rs2338795	T	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	37399379	rs2879258	G	T	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	37400091	rs10639842	C	CAA	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=0.906;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr17	37401051	rs11078895	A	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	37410700	rs752314	C	T	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	37410892	rs2879259	C	G	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	37417575	rs3744348	C	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	37421767	rs2061338	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	37425238	rs1966916	T	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	37425262	rs1966915	A	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	37427114	.	TAA	T,TA	995.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.139;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.729;QD=13.28;ReadPosRankSum=1.760;SOR=0.340;set=HC	GT:AD:AF:DP	1/2:10,21,44:0.28,0.59:75
chr17	37580203	rs7405667	T	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	37580936	rs146073566	C	T	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:34,139:0.80:173
chr17	37587534	rs35691977	CT	C	1162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=5.863;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.965;QD=11.99;ReadPosRankSum=-1.205;SOR=1.842;set=HC	GT:AD:AF:DP	0/1:19,78:0.80:97
chr17	37671910	rs8070799	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	37778142	.	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-1.179;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:106,26:0.20:132
chr17	37783787	rs3751903	C	G	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	37785622	rs72827172	G	T	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:17,78:0.82:95
chr17	37814080	rs1877031	G	A	9386.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr17	37815899	rs11658786	G	A	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	37821435	rs931992	G	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	37822311	rs1053651	A	C	9064.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	37829129	rs2247862	A	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	37830447	rs2934956	T	A	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	37830900	rs2941504	A	G	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	37831035	rs1565922	A	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	37840860	rs35464006	G	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.399;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:87,17:0.16:104
chr17	37866005	rs1810132	C	T	15805.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr17	37868715	rs4252627	C	T	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	37879762	rs903506	G	A	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	37884037	rs1058808	C	G	8854.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	37898543	rs2952142	T	C	12936.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr17	37902887	rs150443878	GAAAAAGAAAAAGA	G	6448.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.48;QD=42.71;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	37921899	rs2952141	C	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	37922259	rs907092	G	A	12429.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr17	37985801	rs3816470	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	38020419	rs1453559	T	C	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	38024626	rs11557466	C	T	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	38028634	rs11557467	G	T	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	38031674	rs10852935	C	T	8471.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	38031714	rs10852936	C	T	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	38062196	rs2305480	G	A	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	38062217	rs2305479	C	T	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	38063381	rs883770	C	T	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	38064405	rs11078927	C	T	10746.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	38064469	rs11078928	T	C	10756.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	38066240	rs2290400	T	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	38066267	rs1008723	G	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	38097664	rs144312254	C	CA	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=4.345;QD=3.34;ReadPosRankSum=1.136;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:148,32:0.18:180
chr17	38100129	rs72832966	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=5.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=2.491;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:176,27:0.13:203
chr17	38100633	rs74717022	C	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.632;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:708,120:0.14:828
chr17	38122680	rs7212938	G	T	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.48;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	38122686	rs7212944	G	A	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.23;ReadPosRankSum=-0.168;SOR=1.228;set=HC	GT:AD:AF:DP	0/1:8,35:0.81:43
chr17	38122708	rs9914973	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr17	38126911	rs10531136	AACACACAC	A,AAC	1686.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=64;set=Intersection	GT:AF:DP	1/2:0.18,0.76:49
chr17	38127713	rs3916061	A	G	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	38128584	rs5820314	A	AG	1632.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr17	38128765	rs8077456	G	C	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:41,164:0.80:205
chr17	38137364	rs3087852	G	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	38140524	rs3816471	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	38142677	rs3816472	A	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	38142978	rs3859188	C	T	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.434;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=3.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.362;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:288,64:0.18:352
chr17	38144780	rs7222556	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.570;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr17	38145088	rs9915252	C	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	38146482	rs11405679	C	CT	1063.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.078;QD=7.82;ReadPosRankSum=-0.173;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:44,92:0.68:136
chr17	38146542	rs3744245	C	G	1436.80	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:7,58:0.89:65
chr17	38152304	rs8071037	A	T	137.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	38152373	rs35244421	CA	C	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.061;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr17	38153473	rs12453334	C	T	2498.79	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:9,91:0.91:100
chr17	38153554	rs2241244	G	C	9482.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	38153714	rs10671123	T	TGA	17001.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	38172192	rs2227324	G	A	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	38172305	rs2071369	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	38172452	rs2071370	T	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	38172942	rs2227338	A	G	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	38173143	rs25645	G	A	2506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=0.007;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:30,111:0.79:141
chr17	38175866	rs11555254	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.387;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr17	38176256	rs2270401	A	T	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:25,77:0.75:102
chr17	38176476	rs9899955	A	G	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	38178149	rs2302776	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr17	38179492	rs2302777	A	G	5468.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:65,230:0.78:295
chr17	38179667	rs2302778	A	G	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:23,108:0.82:131
chr17	38182844	rs2302775	T	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.085;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr17	38183090	rs2302774	G	T	5884.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:46,245:0.84:291
chr17	38188419	rs3935281	C	T	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,50:0.79:63
chr17	38188844	rs7502514	A	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	38189049	rs4072639	G	A	4143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.92;ReadPosRankSum=0.987;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:29,179:0.86:208
chr17	38189055	rs3935280	A	G	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	38189793	rs11078934	T	C	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	38191924	rs6503534	A	G	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.858;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:219,49:0.18:268
chr17	38192137	rs11078935	T	G	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,51:0.77:66
chr17	38210057	rs8070452	C	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr17	38245383	rs142410222	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-1.544;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr17	38252582	.	G	GT	414.73	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr17	38252660	rs883871	G	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.389;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:125,28:0.18:153
chr17	38252667	rs939346	G	A	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	38253212	rs2314339	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=10.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.454;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr17	38253228	rs2102928	T	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	38324766	rs11327454	AT	A	1059.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	38334359	rs66989091	A	AG	2221.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	38348353	rs55772196	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-1.676;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:92,17:0.16:109
chr17	38349127	rs2280400	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.985;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:113,26:0.19:139
chr17	38433215	.	A	T	256.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr17	38434251	rs112148679	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:38,10:0.21:48
chr17	38556770	rs471692	T	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=4.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.481;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:221,45:0.17:266
chr17	38563710	rs558068	C	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.454;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr17	38566396	rs2715548	G	A	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	38572366	rs2586112	G	A	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:29,6:0.17:35
chr17	38600092	rs598892	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr17	38609431	rs5820347	G	GAC	2448.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr17	38643780	rs3764423	G	A	926.94	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr17	38652220	rs78581969	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.452;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:202,37:0.15:239
chr17	38786451	rs4890092	A	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.864;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr17	38788675	rs202002074	G	GT	180.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:40,10:0.20:50
chr17	38801695	rs376363717	CT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=2.089;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr17	38813462	rs56178748	C	CAAA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.696;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr17	38813824	rs8068721	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-1.364;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr17	38854406	rs2429549	G	A	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:24,87:0.78:111
chr17	38855772	rs2462961	T	C	3973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.98;ReadPosRankSum=-0.678;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:46,175:0.79:221
chr17	38856662	rs887376	T	C	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:15,79:0.84:94
chr17	38857446	rs874889	C	A	5136.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:45,218:0.83:263
chr17	38857975	.	GTATATATATATATATATATATATATATATATA	G	661	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=4;MGOF=16;MMLQ=21;MQ=60.22;NF=15;NR=8;PP=661;QD=28.8695652174;SC=TGATCCTCTAGTATATATATA;SbPval=0.88;Source=Platypus;TC=34;TCF=18;TCR=16;TR=23;WE=38858041;WS=38857965;set=Platypus	GT:AD:AF:DP	0/1:11,23:0.68:34
chr17	38857994	.	TA	T	318.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.590;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.548;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr17	38857996	.	TATATATATATATATATATATATATATATATATA	T,TTATATATATATATATATATATATATATATATA	1472.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=39.80;ReadPosRankSum=1.688;SOR=0.872;set=HC	GT:AD:AF:DP	1/2:3,14,20:0.38,0.54:37
chr17	38857998	.	TATATATATATATATATATATATATATATATA	T	478.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.313;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr17	38858134	rs11309872	CA	C	7895.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:62,219:0.78:281
chr17	38905477	rs10491127	T	G	8660.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr17	38911212	rs12951078	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.456;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:195,43:0.18:238
chr17	38911363	rs12951399	G	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.48;ReadPosRankSum=1.064;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:176,35:0.17:211
chr17	38922718	rs35253595	TTC	T	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.132;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr17	38925413	rs200744358	TTTTA	T	2234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.183;QD=29.02;ReadPosRankSum=1.365;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:19,58:0.75:77
chr17	38927478	rs116825164	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.211;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:82,12:0.13:94
chr17	38934118	rs2286648	C	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.601;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.303;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr17	38935812	rs981684	A	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.532;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:122,25:0.17:147
chr17	38935876	rs17558532	C	T	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:26,108:0.81:134
chr17	38936659	rs17558560	C	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.338;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:262,40:0.13:302
chr17	38938216	rs17473777	T	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.956;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr17	38938222	rs72824004	T	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,38:0.83:46
chr17	38950272	rs2250671	T	C	4517.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:31,197:0.86:228
chr17	38953540	rs3813038	A	G	6363.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:41,275:0.87:316
chr17	38954687	rs9914044	C	T	1369.79	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:7,53:0.88:60
chr17	38955173	rs7222207	G	A	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:13,77:0.86:90
chr17	38955274	rs7224150	A	C	1644.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.17;ReadPosRankSum=0.866;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:4,67:0.94:71
chr17	38975307	.	TGCCGCCGTGGCC	T	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.103;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr17	38975328	rs17855579	G	A	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.466;QD=18.90;ReadPosRankSum=-0.439;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:18,74:0.80:92
chr17	38976978	rs6503559	C	A	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:35,143:0.80:178
chr17	38976998	rs1799873	G	A	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:30,109:0.78:139
chr17	38977048	rs1799874	T	C	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:20,55:0.73:75
chr17	38978462	rs77919366	C	T	16150.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:117,680:0.85:797
chr17	38978536	rs4261597	A	C	26193.77	.	AC=2;AF=1.00;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	1/1:0,961:1.00:961
chr17	38990834	rs2240078	G	C	4647.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	38991032	rs6694	T	A	8283.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:63,344:0.85:407
chr17	39023396	rs11650915	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.701;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:269,60:0.18:329
chr17	39032768	rs971812	A	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=6.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-2.440;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:133,29:0.18:162
chr17	39081713	rs8037	A	G	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.073;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr17	39084504	rs9257	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=17.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.507;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr17	39240426	rs11658607	G	A	17286.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr17	39240504	rs11655310	A	G	18003.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.11;QD=42.06;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr17	39240504	.	AGCCAAGA	GGCCAAGA,GGCCAAGT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=1;MMLQ=24;MQ=45.9;NF=202,177;NR=244,179;PP=219,2944;QD=0.568993750106;SC=CCAGGGCTGCAGCCAAGACCT;SbPval=0.51;Source=Platypus;TC=446;TCF=202;TCR=244;TR=446,356;WE=39240519;set=Platypus	GT:AF:DP	0/1:1.00:446
chr17	39240511	rs383835	A	T	9336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=27.627;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=8.135;QD=22.39;ReadPosRankSum=7.813;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:49,368:0.88:417
chr17	39240661	rs11650484	C	G	10793.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr17	39240790	.	G	A	2836	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=6;HapScore=1;MMLQ=28;NF=8;NR=34;QD=20;SC=ACCTGCTGCCGCCCCAGCTGC;SbPval=0.98;Source=Platypus;TC=53;TCF=19;TCR=34;TR=42;WE=39240803;WS=39240780;set=Platypus	GT:AD:AF:DP	1/1:11,42:0.79:53
chr17	39254335	rs201764113	A	AT	13496.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	39254444	rs6416913	T	C	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	39258027	rs7503699	G	A	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=27.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	39258495	rs168397	G	A	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	39261560	rs349792	T	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.95;QD=34.15;SOR=7.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	39261608	rs349791	G	A	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.49;QD=47.38;SOR=3.775;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	39261611	rs11654665	G	A	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.19;QD=42.70;SOR=3.107;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	39261933	rs7207685	C	T	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	39261949	rs7212474	T	C	7605.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	39274069	rs349771	G	C	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:10,192:0.95:202
chr17	39274415	rs425487	C	T	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=4.671;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-13.280;QD=6.08;ReadPosRankSum=0.636;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:260,71:0.21:331
chr17	39274426	.	T	A	1775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DP=340;ExcessHet=3.0103;FS=5.872;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-14.046;QD=5.25;ReadPosRankSum=-4.460;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:275,63:0.19:338
chr17	39274435	.	A	T	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.737;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-14.692;QD=3.79;ReadPosRankSum=-6.459;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:298,52:0.15:350
chr17	39274437	.	C	T	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=3.603;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-14.570;QD=3.53;ReadPosRankSum=-6.791;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:299,48:0.14:347
chr17	39274448	.	AC	GT	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.274;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=10.349;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-13.944;QD=0.82;ReadPosRankSum=-4.670;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:317,19:0.06:336
chr17	39274518	rs9897031	C	T	12084.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr17	39324229	.	T	TGCAGCAGGTGGTCAG	2968	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MMLQ=22;MQ=48.21;NF=19;NR=15;PP=2968;QD=20;SC=CAGGTGGTCCTGCAGCAGCTG;SbPval=0.04;Source=Platypus;TC=73;TCF=26;TCR=47;TR=34;WE=39324237;set=Platypus	GT:AD:AF:DP	0/1:39,34:0.47:73
chr17	39333956	rs377518	T	C	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	39334133	rs389784	T	C	6856.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr17	39334456	rs493514	G	A	9812.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr17	39340597	rs452216	G	A	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	39340707	rs398825	C	T	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	39340795	.	ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	A	4278.73	.	AC=2;AF=1.00;AN=2;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=42.36;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	39340812	.	T	C	2122	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=2;HapScore=1;MMLQ=27;NF=40;NR=49;PP=2122;QD=24.2333844106;SC=CAGCTGGACATACCACAGCTG;Source=Platypus;TCF=40;TR=89;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:1,89:0.99:90
chr17	39340826	.	T	C	1851	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=6;HapScore=1;MGOF=43;MMLQ=24;MQ=53.96;NF=44;NR=49;PP=1851;QD=20.2771098123;SC=ACAGCTGGGGTGGCAGGTGGT;SbPval=0.49;Source=Platypus;TC=98;TCF=45;TCR=53;TR=93;WE=39340834;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:5,93:0.95:98
chr17	39340843	.	GCAGAGTGGG	ACAGACTGGG,ACAGAGTGGA	2726	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=40;MMLQ=28;MQ=53.74;NF=8,30;NR=18,25;PP=869,2726;QD=35.4795336485;SC=TGGTCTGACAGCAGAGTGGGC;SbPval=0.93;Source=Platypus;TC=95;TCF=44;TCR=51;TR=26,55;WE=39340860;WS=39340833;set=Platypus	GT:AF:DP	0/1:0.27:95
chr17	39340910	rs2320231	T	C	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	39341158	rs452531	G	A	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	39341266	rs449817	A	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	39341294	rs385122	T	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	39346518	rs238824	T	C	13819.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr17	39346595	rs11283848	T	TGCTGTGGGTCCAGCTGCTGCCAGCCTA	17113.73	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	39406409	rs2191379	C	A	11461.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr17	39406447	rs3967754	A	G	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	39432562	rs9893993	A	T	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	39458765	rs1005197	A	G	7684.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	39459167	rs1005196	G	A	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	39507115	rs16966714	T	C	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	39520040	rs372129751	C	T	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:5,66:0.93:71
chr17	39535859	rs2239710	A	G	11099.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	39593768	rs897416	A	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	39593872	rs897415	A	G	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	39594934	rs71155140	AC	A	30053.73	.	AC=2;AF=1.00;AN=2;DB;DP=1045;set=Intersection	GT:AD:AF:DP	1/1:0,998:1.00:998
chr17	39595661	rs2071611	T	A	7523.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	39596393	rs12601328	C	A	10952.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=0.989;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	39596402	rs2071610	G	A	11110.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	39596538	rs2071609	C	T	10585.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	39596611	rs1350046	T	C	13813.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr17	39616288	rs3840884	TG	T	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	39616430	rs2604953	G	T	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	39619093	rs2604954	GT	AC	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	39619115	rs2071563	G	A	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	39619219	rs2857257	G	A	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	39619388	rs4796636	C	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	39620399	rs12948056	C	T	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	39633317	rs2239711	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	39633349	rs2071601	G	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	39634625	rs7216017	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	39636044	rs2011243	G	A	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	39637244	rs743686	A	G	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	39643340	rs11657323	T	G	8300.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	39643646	rs2301354	G	A	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	39644057	rs2301353	G	A	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	39646021	rs1003842	A	G	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	39659183	rs4796698	G	A	9588.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	39659194	rs4796697	T	C	10207.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr17	39659529	rs7211835	T	C	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	39659913	rs9891361	G	A	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	39661689	rs8182306	G	A	22745.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:0,838:1.00:838
chr17	39670912	rs897420	G	C	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.73;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	39671045	rs897421	T	C	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	39674540	rs3744784	A	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=3.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.644;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:203,49:0.19:252
chr17	39674641	rs1050784	T	C	7341.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:46,283:0.86:329
chr17	39680380	rs138382069	T	TG	980.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=1.087;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:164,54:0.25:218
chr17	39680580	rs1869719	A	C	10131.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr17	39680796	rs1869720	T	A	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	39681475	rs4601	A	G	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:17,98:0.85:115
chr17	39684321	rs4602	G	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:10,67:0.87:77
chr17	39684410	rs11550883	G	A	1205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=0.647;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:12,54:0.82:66
chr17	39723451	rs6503636	A	G	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	39723990	rs3890472	T	A	10170.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr17	39724047	rs1008753	T	C	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	39726276	rs3816510	C	A	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	39727816	rs8075921	T	G	18825.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:1,719:1.00:720
chr17	39728050	rs8070680	G	A	23757.77	.	AC=2;AF=1.00;AN=2;DB;DP=937;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,928:1.00:928
chr17	39740303	rs200977988	A	ATC	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=1.506;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:9,40:0.82:49
chr17	39742894	rs3826551	G	A	12089.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=43.80;SOR=1.290;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	39742898	rs11551758	G	A	11989.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.07;SOR=1.365;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	39742899	rs6503640	C	T	11989.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=46.11;SOR=1.384;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	39766504	rs7406899	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	39767744	rs4796681	A	G	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	39767836	rs2100509	G	A	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	39883559	rs33914436	G	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.348;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:200,46:0.19:246
chr17	39883595	rs7216154	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.971;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:121,30:0.20:151
chr17	39883972	rs4796600	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.581;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=1.988;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:141,18:0.11:159
chr17	39884091	rs4796601	G	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=813;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.466;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:695,116:0.14:811
chr17	39884246	rs4796602	G	A	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.436;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=8.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.292;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:164,47:0.22:211
chr17	39884419	rs4796692	C	T	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=1.729;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:361,75:0.17:436
chr17	39884684	rs4796694	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=10.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.365;SOR=0.049;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr17	39888455	rs3895103	G	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.862;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=1.373;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:383,53:0.12:436
chr17	39890715	rs4796603	A	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.520;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:189,33:0.15:222
chr17	39890876	rs4796604	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.297;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:86,15:0.15:101
chr17	39891008	rs185830826	G	A	491.78	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr17	39912145	rs1126821	T	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.561;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.322;QD=1.12;ReadPosRankSum=0.773;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:95,18:0.16:113
chr17	39912259	rs141010071	A	AC	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.943;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.123;QD=1.96;ReadPosRankSum=-0.929;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr17	39913645	rs7216034	T	C	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.002;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:229,41:0.15:270
chr17	39914070	rs8067890	G	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.480;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:62,13:0.17:75
chr17	39923614	rs12942034	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=6.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.861;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr17	39925925	rs7405731	A	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.983;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:98,22:0.18:120
chr17	39959189	rs1065029	C	G	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	39959511	rs3809877	C	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=2.968;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:168,44:0.21:212
chr17	39966168	rs2304493	T	G	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:13,53:0.80:66
chr17	39967442	rs13412	T	C	7529.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:74,334:0.82:408
chr17	39977862	rs8072866	C	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	39983644	rs9896766	A	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr17	39983808	rs1046404	G	C	4198.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:50,186:0.79:236
chr17	39983820	rs1046403	G	A	4257.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:48,189:0.80:237
chr17	39983849	rs1128966	G	C	4207.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:47,180:0.79:227
chr17	39987130	rs4796712	T	C	11625.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr17	39988601	rs7208062	C	T	1675.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=-0.393;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:3,64:0.96:67
chr17	39991790	rs1319763	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:15,66:0.81:81
chr17	39991801	rs71373456	T	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.702;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr17	39991848	rs148849516	CGCTG	C	864.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:91,28:0.24:119
chr17	39991867	rs3039772	A	ATATC	3905.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:29,93:0.76:122
chr17	39991988	rs1865841	G	A	3635.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:23,142:0.86:165
chr17	39998141	rs1529933	C	T	6017.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:39,249:0.86:288
chr17	40003421	rs4796721	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr17	40003762	rs370591937	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.450;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr17	40010979	rs3744782	G	A	12676.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:110,541:0.83:651
chr17	40024023	rs7217218	A	T	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	40024867	rs200513285	AAG	A	74.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-1.387;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr17	40024868	rs57604811	AG	A	115.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.330;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr17	40024895	rs8079008	A	G	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.09;SOR=2.142;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	40025264	rs9912300	G	T	7073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.93;ReadPosRankSum=0.465;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:60,295:0.83:355
chr17	40025285	rs9914829	A	G	11996.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	40025453	rs3744779	T	C	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,75:0.84:89
chr17	40025670	rs3744780	G	A	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr17	40027869	rs1808787	A	T	881.85	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,35:0.92:38
chr17	40028450	rs8071627	A	T	6642.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:45,287:0.86:332
chr17	40028541	rs8071753	A	G	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:13,86:0.87:99
chr17	40028568	rs8071234	C	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:9,58:0.87:67
chr17	40035338	rs71373464	A	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.676;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.446;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr17	40048613	rs8065502	A	G	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	40049171	rs4796735	G	A	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	40049473	rs4796736	A	G	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	40053021	rs11652326	T	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	40058204	rs3816121	C	A	2970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.748;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=10.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.13;ReadPosRankSum=2.223;SOR=2.007;set=HC	GT:AD:AF:DP	0/1:25,77:0.75:102
chr17	40058211	rs60769720	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.652;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:69,16:0.19:85
chr17	40058212	rs3816122	G	A	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.18;ReadPosRankSum=0.909;SOR=1.346;set=HC	GT:AD:AF:DP	0/1:16,67:0.81:83
chr17	40062719	rs12948100	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.143;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:102,26:0.20:128
chr17	40065774	rs2304497	T	G	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=4.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.223;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:209,54:0.21:263
chr17	40068613	rs2304499	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,50:0.83:60
chr17	40093190	.	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.814;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:78,16:0.17:94
chr17	40101597	rs35481109	CA	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.859;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr17	40105401	rs77012779	T	TATG	5644.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:18,136:0.88:154
chr17	40120771	rs8078650	T	G	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.116;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:134,26:0.16:160
chr17	40123829	rs12602950	G	A	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:29,116:0.80:145
chr17	40146970	rs6503679	G	A	8193.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	40152431	rs374909941	CT	C	1031.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	40169519	rs4796758	G	T	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	40173851	rs9894001	A	C	7646.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	40186128	rs4277396	C	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	40215180	rs4796765	A	G	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	40266939	rs17659391	G	A	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-2.719;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:222,53:0.19:275
chr17	40341909	rs79309130	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	40359505	rs377476267	GCACA	G,GCA	1864.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.913;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.323;QD=23.91;ReadPosRankSum=2.255;SOR=0.978;set=HC	GT:AD:AF:DP	1/2:5,17,56:0.22,0.72:78
chr17	40384279	rs11653908	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	40490539	.	T	G	585	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=1;MGOF=25;MMLQ=28;MQ=55.78;NF=22;NR=6;PP=585;QD=22.1346861624;SC=GAATACTCCTTGACCTGAGGG;SbPval=0.53;Source=Platypus;TC=29;TCF=23;TCR=6;TR=28;WE=40490547;WS=40490532;set=Platypus	GT:AD:AF:DP	1/1:1,28:0.97:29
chr17	40490559	.	G	T	885	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=1;HapScore=1;MGOF=16;MMLQ=27;MQ=57.66;NF=35;NR=13;PP=885;QD=19.1619002614;SC=GAATACTCCTGGACCTGAGGG;SbPval=0.64;Source=Platypus;TC=51;TCF=36;TCR=15;TR=48;WE=40490567;WS=40490549;set=Platypus	GT:AD:AF:DP	1/1:3,48:0.94:51
chr17	40619937	rs4796668	A	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	40642452	rs9899168	T	C	6964.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	40646803	rs11651671	G	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	40689455	rs659497	T	C	6971.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	40689613	rs2071046	G	C	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	40696233	rs86312	C	G	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	40699291	rs607740	G	A	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	40699332	rs607795	T	C	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.70;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	40699475	rs67843205	G	GC	2332.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	40700448	rs2854973	C	G	7046.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	40705100	rs597255	C	T	7473.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	40705955	rs2676530	C	T	31618.77	.	AC=2;AF=1.00;AN=2;DB;DP=1196;set=Intersection	GT:AD:AF:DP	1/1:0,1193:1.00:1193
chr17	40706906	rs605059	G	A	5565.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	40714804	rs615942	C	A	10928.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr17	40716520	rs598126	A	G	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	40720605	rs646174	G	A	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	40721360	rs632758	C	A	8697.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	40725656	rs2292752	G	C	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	40734987	rs35747013	AT	A	622.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=20.09;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	40735469	rs1517002	T	G	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	40737043	rs9889580	G	C	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.05;SOR=1.759;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	40766546	rs1045710	C	G	7917.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	40811781	rs2292750	C	T	17937.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,649:1.00:649
chr17	40811919	rs525911	A	G	10681.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr17	40817990	rs7225374	G	A	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	40818451	rs1554227	G	A	22110.77	.	AC=2;AF=1.00;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	1/1:12,808:0.99:820
chr17	40818699	rs1046097	A	G	14060.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr17	40822308	rs8071056	C	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	40826525	rs35595844	AAGG	A	1582.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	40835819	rs36108420	A	AT	8504.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	40835922	rs2271029	A	C	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	40836975	rs9889373	A	G	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr17	40841397	rs2271028	C	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	40842084	rs3760386	G	A	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	40848342	rs36083265	AT	A	183.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-1.063;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr17	40849842	rs1553468	A	G	9578.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	40850552	rs112344327	CGT	C	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr17	40854534	rs3841620	G	GT	5494.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	40865103	rs117168775	A	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.975;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.929;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr17	40874643	rs11298431	CA	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.745;QD=6.57;ReadPosRankSum=-0.758;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr17	40880759	.	C	CA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.172;QD=1.87;ReadPosRankSum=1.625;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr17	40945874	rs34930579	C	CT	308.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.548;QD=10.63;ReadPosRankSum=0.867;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr17	40986454	.	GGA	G	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.111;QD=2.21;ReadPosRankSum=-1.101;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr17	41046440	rs324079	T	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	41063466	rs2229611	T	C	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	41103938	rs534720	T	C	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	41113131	rs35166621	CA	C	371.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:60,19:0.24:79
chr17	41113543	rs2670865	C	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	41116234	rs690941	G	A	8537.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:2,328:0.99:330
chr17	41116291	rs11278824	CAGCCCT	C	6013.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	41116565	rs690971	G	T	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	41116723	rs690979	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	41121205	.	TGGG	T	715.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=-1.170;QD=6.07;ReadPosRankSum=-0.259;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr17	41121207	rs373590793	GGGGC	G	2037.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.820;QD=18.36;ReadPosRankSum=0.736;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:27,84:0.76:111
chr17	41121209	.	GGC	G	2213	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=4;HapScore=1;MGOF=4;MMLQ=21;MQ=60.26;NF=9;NR=55;PP=2213;QD=35.0;SC=TCATCCTGGGGGCGGGGGGGA;SbPval=0.53;Source=Platypus;TC=64;TCF=9;TCR=55;TR=64;WE=41121226;WS=41121198;set=Platypus	GT:AD:AF:DP	0/1:0,64:1.00:64
chr17	41121217	.	G	GGA	273.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-1.173;QD=2.42;ReadPosRankSum=0.000;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:89,24:0.21:113
chr17	41121218	.	G	GAA	2669.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.554;QD=24.49;ReadPosRankSum=0.315;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:24,85:0.78:109
chr17	41121263	rs4793187	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.269;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr17	41122443	rs2670866	T	C	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	41132578	rs692074	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	41133071	rs1708875	T	C	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	41133242	rs550285	G	A	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	41150949	rs2271539	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=1.472;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:124,20:0.14:144
chr17	41150983	rs691954	T	C	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	41164126	rs692651	A	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	41165493	rs588703	A	G	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	41165734	rs443759	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-1.110;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:88,16:0.15:104
chr17	41165878	rs13229	C	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	41167957	rs455055	C	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.233;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=9.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.420;SOR=1.783;set=HC	GT:AD:AF:DP	0/1:114,21:0.16:135
chr17	41170898	rs429464	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.223;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.540;QD=0.47;ReadPosRankSum=-0.930;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:90,14:0.13:104
chr17	41170943	rs55845054	GTAA	G	1554.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	41174025	rs2070835	A	C	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:37,123:0.77:160
chr17	41180772	rs12944458	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr17	41215825	rs3092994	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,41:0.76:54
chr17	41219560	rs8176235	C	T	2430.78	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:13,101:0.89:114
chr17	41219780	rs8176234	T	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr17	41219804	rs8176233	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr17	41223094	rs1799966	T	C	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:33,155:0.82:188
chr17	41226601	rs273900734	G	C	923.79	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:4,35:0.90:39
chr17	41234470	rs1060915	A	G	6560.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:76,280:0.79:356
chr17	41244000	rs16942	T	C	7322.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:69,292:0.81:361
chr17	41244435	rs16941	T	C	6058.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:52,246:0.83:298
chr17	41244936	rs799917	G	A	9926.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:75,403:0.84:478
chr17	41245237	rs16940	A	G	11640.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:102,491:0.83:593
chr17	41245466	rs1799949	G	A	6704.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:60,287:0.83:347
chr17	41249094	rs8176145	A	G	209.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr17	41249363	rs273902772	TA	T	554.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr17	41256074	rs368252296	CA	C	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.942;MLEAC=1;MLEAF=0.500;MQ=63.18;MQRankSum=1.375;QD=11.55;ReadPosRankSum=-0.431;SOR=1.546;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr17	41256089	rs373413425	AAAAAAAAAGAAAAG	A	1356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.34;MQRankSum=1.025;QD=33.92;ReadPosRankSum=2.517;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:5,35:0.88:40
chr17	41276247	rs3765640	A	G	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	41277187	rs799905	G	C	10633.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:100,465:0.82:565
chr17	41291779	rs4792978	G	T	1015.88	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,37:0.93:40
chr17	41291953	rs11657835	C	G	5996.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:45,257:0.85:302
chr17	41296197	rs35170910	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr17	41327621	rs2271573	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:13,55:0.81:68
chr17	41327648	rs2271574	T	C	3835.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:17,91:0.84:108
chr17	41327650	rs3215228	G	GT	3826.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:20,94:0.82:114
chr17	41327684	rs10684756	C	CTG	9002.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	41330024	rs11657883	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:14,47:0.77:61
chr17	41330234	rs377016401	TA	T	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-0.773;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr17	41330265	rs11656945	A	G	709.78	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr17	41331306	rs11653460	C	T	3771.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:46,163:0.78:209
chr17	41331460	rs11653231	G	A	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:21,79:0.79:100
chr17	41332804	rs9904555	T	C	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	41341027	rs117796976	C	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.737;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:150,29:0.16:179
chr17	41346283	rs4793217	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr17	41352643	rs35995789	C	T	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:22,79:0.78:101
chr17	41353806	rs2306829	C	T	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:17,102:0.86:119
chr17	41354888	rs17527933	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:8,46:0.85:54
chr17	41355955	rs35909706	CT	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.92;ReadPosRankSum=-2.744;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr17	41361881	.	ATT	A	1144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=4.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-0.737;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:24,53:0.69:77
chr17	41361960	rs8482	A	G	2920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=0.326;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:30,134:0.82:164
chr17	41364910	rs3803871	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr17	41368082	rs140334356	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.861;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr17	41455232	rs60344336	CT	C	128.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=-0.000;DB;DP=69;ExcessHet=3.0103;FS=6.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.84;ReadPosRankSum=2.239;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr17	41465968	rs377041387	T	C	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.833;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=8.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-8.828;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:265,31:0.10:296
chr17	41465970	rs371420425	A	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.091;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-7.891;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:265,26:0.09:291
chr17	41465973	.	A	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.174;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-7.360;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:264,22:0.08:286
chr17	41465975	rs142037739	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.452;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=4.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=-7.179;SOR=1.268;set=HC	GT:AD:AF:DP	0/1:262,20:0.07:282
chr17	41466000	.	C	CGAGGGG	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.264;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=-3.311;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:239,14:0.06:253
chr17	41466002	.	C	CGAG	247.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.655;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.442;QD=0.97;ReadPosRankSum=-3.525;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:235,20:0.08:255
chr17	41466003	.	T	G	262.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.124;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=7.001;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.129;QD=1.02;ReadPosRankSum=-3.639;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:233,24:0.09:257
chr17	41466007	.	C	CG	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.867;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=8.650;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.013;QD=1.77;ReadPosRankSum=-2.960;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:225,25:0.10:250
chr17	41466009	.	GC	G	882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.878;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=11.328;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.835;QD=3.52;ReadPosRankSum=-2.850;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:223,28:0.11:251
chr17	41466019	.	T	G	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.779;QD=4.21;ReadPosRankSum=-4.835;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:199,52:0.21:251
chr17	41466022	rs79526563	G	C	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.709;QD=4.42;ReadPosRankSum=-4.430;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:189,52:0.22:241
chr17	41466035	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=1;MGOF=41;MMLQ=24;MQ=60.02;NF=27;NR=46;PP=2962;QD=20;SC=TCAGGGAAGCAGAAGGCCTGG;SbPval=0.52;Source=Platypus;TC=227;TCF=83;TCR=144;TR=73;WE=41466063;WS=41466009;set=Platypus	GT:AD:AF:DP	1/0:154,73:0.32:227
chr17	41466049	rs62080661	A	G	2568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.908;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=5.294;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.011;QD=11.57;ReadPosRankSum=0.109;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:148,74:0.33:222
chr17	41466055	rs62080662	G	C	2625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=4.411;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.916;QD=12.44;ReadPosRankSum=1.338;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:136,75:0.36:211
chr17	41466096	rs62080664	A	G	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:75,95:0.56:170
chr17	41466108	rs62080665	G	C	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:64,90:0.58:154
chr17	41466120	rs66825422	GCGGCGCATGGA	G	3147.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:52,79:0.60:131
chr17	41522213	rs7207008	T	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.418;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:68,15:0.18:83
chr17	41561601	rs140026870	CGGAAGGA	C	12619.73	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	41566783	rs141196624	CTCT	C	567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=2.008;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr17	41566965	rs200604126	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.917;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr17	41569933	rs11870101	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.721;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr17	41585657	rs2293014	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,55:0.83:66
chr17	41610270	rs150119757	A	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.235;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:76,13:0.15:89
chr17	41622562	rs34640745	C	CGT,CGTGTGT	2017.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.000;QD=37.37;ReadPosRankSum=-0.697;SOR=0.874;set=HC	GT:AD:AF:DP	1/2:2,13,39:0.24,0.72:54
chr17	41721202	rs35674347	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr17	41738823	rs9898682	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr17	41846964	rs1230403	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	41855072	rs7225685	T	C	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:10,57:0.85:67
chr17	41858026	rs2301682	G	T	4784.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:36,199:0.85:235
chr17	41858322	rs76293039	T	A	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:21,110:0.84:131
chr17	41955158	rs231521	A	G	8748.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	41959808	rs124721	T	C	29422.77	.	AC=2;AF=1.00;AN=2;DB;DP=1087;set=Intersection	GT:AD:AF:DP	1/1:0,1078:1.00:1078
chr17	41960343	rs124719	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	41960633	rs412849	CG	GC	13073.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	41961451	rs231518	T	C	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	41987062	rs3744416	A	G	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:27,92:0.77:119
chr17	41994696	rs61455159	G	A	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:25,109:0.81:134
chr17	41994792	rs61231498	T	C	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:34,101:0.75:135
chr17	41994794	rs231458	C	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.545;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:100,34:0.25:134
chr17	42018471	rs231473	T	C	13453.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr17	42030409	rs162430	G	A	5785.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:40,249:0.86:289
chr17	42030531	rs1058046	G	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-1.088;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:103,17:0.14:120
chr17	42030743	rs229969	G	C	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr17	42031331	rs2070592	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-1.515;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr17	42035360	rs62080323	G	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=1.855;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr17	42083840	rs228770	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	42084067	rs55708447	T	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.187;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:112,21:0.16:133
chr17	42085150	rs228773	T	C	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	42085672	rs147086401	AATGAG	A	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.720;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.693;QD=1.84;ReadPosRankSum=0.690;SOR=1.693;set=HC	GT:AD:AF:DP	0/1:56,8:0.12:64
chr17	42090587	rs228778	G	C	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:5,33:0.87:38
chr17	42092328	rs77536093	A	G	8888.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:67,379:0.85:446
chr17	42152103	rs3815076	G	A	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:49,254:0.84:303
chr17	42155838	rs9913925	G	A	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.313;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:220,55:0.20:275
chr17	42156471	rs376816	A	C	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.474;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:271,57:0.17:328
chr17	42157739	rs850856	C	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.896;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:495,92:0.16:587
chr17	42164885	rs228757	G	C	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-1.035;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:664,134:0.17:798
chr17	42170181	rs67111880	TG	T	253.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.07;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	42170871	rs117519930	C	T	5567.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:52,222:0.81:274
chr17	42171206	rs454192	T	C	9948.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr17	42225547	rs227584	A	C	10104.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:82,419:0.84:501
chr17	42232442	rs2246287	C	G	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:26,86:0.77:112
chr17	42239349	rs730228	T	C	5551.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:51,244:0.83:295
chr17	42248346	rs7218599	A	T	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:38,133:0.78:171
chr17	42249717	rs10628218	A	ATG	1076.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;MQ=60.35;set=Intersection	GT:AD:AF:DP	0/1:6,33:0.85:39
chr17	42254011	rs7220138	C	G	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.31;ReadPosRankSum=-0.033;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:19,68:0.78:87
chr17	42254281	rs7212573	A	G	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:12,56:0.82:68
chr17	42254417	rs7212854	A	G	726.84	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr17	42254527	rs7217858	T	G	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:17,69:0.80:86
chr17	42255097	rs3826412	T	C	8111.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:41,317:0.89:358
chr17	42264962	rs4793082	A	G	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:21,191:0.90:212
chr17	42266218	rs2240226	C	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.78;ReadPosRankSum=-2.141;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr17	42266224	rs8073555	G	C	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.53;ReadPosRankSum=-1.804;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr17	42268274	rs757430	C	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:24,67:0.74:91
chr17	42274145	.	C	CA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=-0.000;QD=6.99;ReadPosRankSum=1.150;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr17	42287519	rs2071167	C	T	5818.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:37,240:0.87:277
chr17	42294198	rs2269908	G	C	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:24,127:0.84:151
chr17	42294215	rs2269907	G	A	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:19,102:0.84:121
chr17	42329004	rs13306780	A	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.725;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:81,20:0.20:101
chr17	42329088	rs67064853	C	CT	42.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-0.385;QD=4.27;ReadPosRankSum=0.714;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr17	42334950	rs2252501	T	C	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.033;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:328,63:0.16:391
chr17	42335685	rs13306775	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.272;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr17	42337091	rs2857082	C	T	8111.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:66,332:0.83:398
chr17	42337976	rs2074107	G	A	9739.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr17	42338248	rs2854528	A	G	4748.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:57,190:0.77:247
chr17	42338998	rs5035	T	G	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:37,168:0.82:205
chr17	42339118	rs13306783	G	GC	1541.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr17	42391046	.	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.507;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr17	42400157	rs76073410	T	G	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=4.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-1.628;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:274,67:0.20:341
chr17	42400556	rs144072891	G	C	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr17	42426631	rs63750742	C	T	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:37,172:0.82:209
chr17	42428220	.	C	T	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.049;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:177,42:0.19:219
chr17	42454270	rs850731	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr17	42454566	rs376710190	CT	C	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.123;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:105,34:0.24:139
chr17	42462106	rs72824741	G	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.282;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr17	42475983	rs936019	G	C	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	42483233	rs2045088	T	A	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	42483531	rs1377808	T	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	42501692	rs1869495	C	A	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	42734746	.	C	CTT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DP=54;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.98;ReadPosRankSum=0.366;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr17	42744238	rs9907151	A	C	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.159;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:183,33:0.15:216
chr17	42751607	rs6416902	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr17	42786170	rs115803922	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.271;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:126,27:0.18:153
chr17	42786954	rs139948303	G	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-2.532;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr17	42808491	rs16970956	G	A	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.114;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:261,62:0.19:323
chr17	42811662	rs75232460	C	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.943;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=10.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-0.235;SOR=0.150;set=HC	GT:AD:AF:DP	0/1:110,19:0.15:129
chr17	42824402	rs4793144	C	A	7652.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:56,337:0.86:393
chr17	42824648	rs9893320	T	C	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	42824731	rs9912745	G	A	3583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=-0.434;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:26,152:0.85:178
chr17	42846994	rs8070918	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	42847033	rs58726064	C	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,47:0.81:58
chr17	42847438	rs55882072	C	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=-0.009;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:279,41:0.13:320
chr17	42851634	rs62066014	G	A	503.89	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:2,21:0.91:23
chr17	42851729	rs35936481	C	T	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.05;ReadPosRankSum=2.232;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:9,50:0.85:59
chr17	42852061	rs12942192	C	T	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.222;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:143,38:0.21:181
chr17	42852604	rs1558083	G	T	7153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.62;ReadPosRankSum=-0.184;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:51,296:0.85:347
chr17	42852610	rs1558084	T	C	15531.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.77;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr17	42853427	rs4792955	A	G	2268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.01;ReadPosRankSum=1.135;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:19,89:0.82:108
chr17	42853694	rs4793151	C	T	5056.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:51,212:0.81:263
chr17	42854208	rs1558085	G	A	7433.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:68,328:0.83:396
chr17	42854502	rs1558086	G	A	1034.88	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:5,41:0.89:46
chr17	42854610	rs8075210	T	C	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:21,114:0.84:135
chr17	42855248	rs2070603	T	C	6678.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:54,277:0.84:331
chr17	42855472	rs2070604	T	C	7400.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:54,328:0.86:382
chr17	42855554	rs2070605	T	C	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:41,182:0.82:223
chr17	42857175	rs143360647	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.157;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:394,69:0.15:463
chr17	42857430	rs35504352	G	A	14338.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:95,635:0.87:730
chr17	42857517	rs16970986	C	T	6585.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:42,248:0.86:290
chr17	42925559	rs12164	C	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	42927628	rs2231647	A	G	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	42927721	rs1071682	G	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.219;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:112,24:0.18:136
chr17	42927965	rs2304987	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.827;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr17	42929970	rs2289673	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	42930859	rs78620114	G	A	8192.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:87,352:0.80:439
chr17	42932244	rs2289672	C	T	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:15,100:0.87:115
chr17	42934372	rs6503405	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	42934694	rs2277615	T	C	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	42945296	rs2120276	A	G	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	42945867	rs3785890	A	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	42953409	rs2289674	A	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:15,87:0.85:102
chr17	42957139	rs2289676	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	42957855	rs1443463	A	G	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	42961009	rs2289677	C	T	7049.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr17	42979592	rs12451394	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:14,69:0.83:83
chr17	42988959	rs2289671	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	42990810	rs3744468	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=0.045;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:84,12:0.12:96
chr17	43003484	rs3169733	T	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.810;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:289,57:0.16:346
chr17	43011908	rs755547	G	A	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.493;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.090;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:326,66:0.17:392
chr17	43101698	.	TGTGTGTGTGG	T	988.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.89;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	43111154	rs10451271	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.178;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr17	43111162	rs9303432	A	G	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.98;SOR=1.685;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	43111688	rs9900173	G	A	5546.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:44,239:0.84:283
chr17	43131480	rs4793172	A	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.166;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:426,86:0.17:512
chr17	43138597	rs62065834	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.135;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:166,33:0.17:199
chr17	43163756	rs6416904	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.086;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr17	43163851	rs6503422	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.899;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:258,42:0.14:300
chr17	43170907	rs2239921	C	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	43176632	rs877598	A	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=1.601;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:46,7:0.13:53
chr17	43176804	rs2239923	C	T	4082.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:53,173:0.77:226
chr17	43181287	rs4793167	A	G	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	43183028	rs1053733	G	A	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:18,88:0.83:106
chr17	43183108	rs1053739	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr17	43192549	rs35911033	T	TC	10589.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	43192681	rs713102	C	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.392;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=4.542;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.723;QD=1.08;ReadPosRankSum=1.013;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:246,65:0.21:311
chr17	43192821	rs713101	A	G	14055.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr17	43196584	rs12603813	T	C	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:19,60:0.76:79
chr17	43198166	rs11382448	A	AG	4159.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	43213772	rs2306828	A	C	5079.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:38,197:0.84:235
chr17	43219921	.	CT	C	60.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=1.097;QD=5.52;ReadPosRankSum=2.744;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr17	43226477	rs67016906	TC	T	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.776;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr17	43226887	rs12051846	A	G	10172.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:106,425:0.80:531
chr17	43227214	rs1044977	T	C	10833.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:110,453:0.80:563
chr17	43227766	rs78243847	T	TTTGG	1986.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	43311704	rs143814916	A	C	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.363;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:136,36:0.21:172
chr17	43316520	rs1023995	T	C	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:13,80:0.86:93
chr17	43318778	rs7218169	GC	CG	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	43319770	rs1801353	C	T	4458.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:59,196:0.77:255
chr17	43333125	rs11651968	C	T	5703.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:58,243:0.81:301
chr17	43333785	rs76453679	AAGAC	A	4433.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:31,110:0.78:141
chr17	43334649	rs60163605	C	A	1626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.54;ReadPosRankSum=0.981;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:9,41:0.82:50
chr17	43334653	rs58314091	T	C	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.51;ReadPosRankSum=-0.090;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:8,44:0.85:52
chr17	43342141	rs1047833	G	C	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:37,176:0.83:213
chr17	43342306	rs2285674	C	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	43344073	rs2074293	G	A	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:36,139:0.79:175
chr17	43351127	rs2072090	G	C	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:16,94:0.85:110
chr17	43363704	rs149216398	G	A	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,43:0.80:54
chr17	43364293	rs56405343	C	CG	13493.73	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr17	43506923	.	C	T	315.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.90;QD=26.31;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	43910455	rs17689966	G	A	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.28;QD=25.91;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	43922897	rs929223	G	A	2043.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=46.67;MQRankSum=-1.222;QD=19.65;ReadPosRankSum=0.547;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:13,91:0.88:104
chr17	43923180	rs242944	G	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.44;QD=26.97;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	43923898	rs171443	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=28.82;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	43924412	rs242943	T	C	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.46;QD=33.24;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	44067382	rs2258689	T	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.51;MQRankSum=-0.362;QD=1.01;ReadPosRankSum=-0.563;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:113,21:0.16:134
chr17	44067847	rs2435213	G	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.641;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-1.955;QD=7.25;ReadPosRankSum=-1.476;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr17	44067941	.	C	T	103.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.66;QD=25.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	44363740	.	C	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=39.86;MQRankSum=0.077;QD=23.64;ReadPosRankSum=-1.228;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr17	44788253	rs78850923	G	A	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	44806139	.	C	CA	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-1.451;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr17	44833088	rs71138549	AT	A	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.998;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=16.254;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.654;QD=2.41;ReadPosRankSum=-1.254;SOR=3.803;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr17	44851006	.	TC	T	139.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr17	44950122	rs4968281	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=6.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.097;SOR=2.395;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr17	44950237	rs11654422	G	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr17	44950253	rs11654424	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr17	45000529	rs189899	G	C	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	45000547	rs183199	G	C	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	45008570	rs197922	G	A	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	45008742	rs197923	G	C	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	45012248	rs169126	T	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	45017837	rs11657819	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:13,79:0.86:92
chr17	45017859	rs758392	A	G	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	45050533	rs11079746	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=3.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.891;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:160,36:0.18:196
chr17	45056301	rs79497126	G	T	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:26,99:0.79:125
chr17	45214519	rs74348171	A	G	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-14.665;QD=4.95;ReadPosRankSum=-7.693;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:207,49:0.19:256
chr17	45214527	rs62075618	T	C	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.144;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-14.508;QD=5.02;ReadPosRankSum=-5.235;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:209,51:0.20:260
chr17	45214558	rs77685276	G	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.119;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-13.344;QD=2.58;ReadPosRankSum=2.444;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:177,53:0.23:230
chr17	45214604	rs75661039	AT	TC	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.511;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=7.916;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-10.588;QD=7.57;ReadPosRankSum=-3.253;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:111,35:0.24:146
chr17	45221350	rs11570517	TA	T	546.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr17	45234406	rs112848754	CA	C	219.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr17	45234420	rs78493795	T	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-5.074;QD=5.72;ReadPosRankSum=0.419;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr17	45234760	rs11372544	C	CA	1097.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=0.139;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:13,65:0.83:78
chr17	45291103	rs11327482	TG	T	3827.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:19,148:0.89:167
chr17	45300218	rs4968309	C	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr17	45380002	rs3760372	T	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	45385012	rs3809863	C	T	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	45422628	rs7214410	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	45425115	rs7206971	G	A	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	45425144	rs3851808	C	T	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	45438886	rs10538163	CAGTG	C	4304.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	45438952	rs6504872	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	45451894	rs4968318	G	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	45479446	rs12452315	A	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	45479706	rs11079774	C	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	45479733	rs12452796	A	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	45567593	rs142960189	ATC	A	14821.73	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr17	45569815	rs2610367	A	G	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	45623409	.	G	GGTGT,GGT	1641.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=185;set=Intersection	GT:AF:DP	0/1:0.68:73
chr17	45663680	rs372546318	GTA	G	999.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:98,48:0.33:146
chr17	45664573	rs368843753	CT	C	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-3.819;QD=1.04;ReadPosRankSum=-1.315;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:152,47:0.24:199
chr17	45668339	.	T	G	645	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=6;HapScore=1;MGOF=3;MMLQ=30;MQ=44.7;NF=0;NR=36;PP=645;QD=18.8825336819;SC=ACTTTGAAAATAAGAGAAAAT;SbPval=1.0;Source=Platypus;TC=120;TCF=8;TCR=112;TR=36;WE=45668347;WS=45668329;set=Platypus	GT:AD:AF:DP	1/0:84,36:0.30:120
chr17	45669359	rs200616431	T	G	3124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.210;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=56.09;MQRankSum=-1.885;QD=4.60;ReadPosRankSum=0.350;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:479,201:0.30:680
chr17	45677192	.	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=6.198;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.530;QD=1.63;ReadPosRankSum=-0.899;SOR=0.152;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr17	45742233	rs56226803	T	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	45754569	rs11301979	AC	A	1715.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	45755810	rs4239162	G	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	45759767	rs7223246	C	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	45774072	rs8078309	T	C	11903.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr17	45786452	rs4794057	C	T	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	45787776	.	G	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.014;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr17	45885687	rs9907142	A	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr17	45885756	rs9911983	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.588;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:152,30:0.16:182
chr17	45887951	rs2074189	G	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=1.666;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:93,19:0.17:112
chr17	45888251	rs2074188	C	G	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:31,140:0.82:171
chr17	45890707	rs2301690	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-1.113;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:189,34:0.15:223
chr17	45890898	rs55928544	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-1.413;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:85,18:0.17:103
chr17	45892545	rs55998645	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=10.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.540;SOR=1.477;set=HC	GT:AD:AF:DP	0/1:53,10:0.16:63
chr17	45892821	rs17700604	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.587;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:42,7:0.14:49
chr17	45894735	rs9914156	A	G	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	45896053	rs62076126	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.951;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr17	45896478	rs878171	T	C	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr17	45897531	rs1985407	C	A	15043.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr17	45904163	rs3809869	A	G	7395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.16;ReadPosRankSum=0.436;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:65,321:0.83:386
chr17	45904420	rs11538868	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.857;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:233,44:0.16:277
chr17	45905850	rs4793671	C	T	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	45912696	rs17701113	C	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.522;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr17	45913653	rs11654648	C	T	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:17,83:0.83:100
chr17	45915468	rs878295	T	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=1.504;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr17	45915788	rs7350974	T	C	8401.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	45994044	rs2228253	C	T	12683.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:106,525:0.83:631
chr17	45994094	rs2228251	T	C	10509.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:103,454:0.82:557
chr17	45994154	rs2229358	G	A	10445.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:101,459:0.82:560
chr17	46000305	.	T	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DP=319;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.369;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:265,52:0.16:317
chr17	46002394	rs3190376	C	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.654;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:237,51:0.18:288
chr17	46002744	rs1130932	G	T	6198.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:51,262:0.84:313
chr17	46022065	rs17679445	G	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:4,53:0.93:57
chr17	46022889	rs2002136	C	T	3334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.71;ReadPosRankSum=1.738;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:21,140:0.87:161
chr17	46023694	rs4378657	G	A	2363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=0.810;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:35,106:0.75:141
chr17	46023954	rs79515268	A	G	3827.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:45,171:0.79:216
chr17	46048157	rs2525084	A	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	46048165	rs2597168	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.04;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	46048168	rs2255697	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	46048592	rs2905846	A	G	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	46048858	rs2525085	C	G	6780.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	46048920	rs72823513	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=4.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.922;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr17	46051911	rs886444	G	A	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	46052793	rs2597172	A	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr17	46054264	rs2525087	C	A	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	46055106	rs2597173	C	T	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	46055347	rs2875746	A	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	46103760	rs12051	A	G	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	46106634	rs9898218	G	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	46109371	rs72823530	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=2.176;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:85,12:0.12:97
chr17	46109428	rs35091825	T	C	4408.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:30,171:0.85:201
chr17	46110469	rs7209072	A	G	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:16,125:0.89:141
chr17	46115072	rs199699704	C	CG	2691.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	46115079	.	C	T	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-1.119;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:16,43:0.73:59
chr17	46115084	rs201261614	T	TGG	2497.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.03;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	46115122	.	A	AG	509.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	46128359	rs12936731	G	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,40:0.85:47
chr17	46132212	rs373501023	T	TG	774.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=33.68;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	46132564	rs143423898	AG	A	2557.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:13,95:0.88:108
chr17	46134236	rs60312877	A	ACT	891.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr17	46152559	rs2240122	C	A	1073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=-4.964;QD=9.18;ReadPosRankSum=-0.875;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:37,80:0.68:117
chr17	46153580	rs11658242	A	G	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:19,102:0.84:121
chr17	46189235	rs140936606	A	AT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.65;ReadPosRankSum=-0.552;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr17	46190106	.	T	TC	34.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr17	46195939	.	CA	C	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.497;QD=2.50;ReadPosRankSum=0.083;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:54,25:0.32:79
chr17	46239985	rs208005	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	46248088	rs7225484	T	C	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=2.161;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr17	46248088	.	T	TC	841	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=13;HapScore=3;MGOF=6;MMLQ=24;MQ=60.0;NF=0;NR=11;PP=841;QD=76.8181818182;SC=TTTTTTTTTTTCGAGATAGAG;SbPval=1.0;Source=Platypus;TC=47;TCF=0;TCR=47;TR=11;WE=46248096;WS=46248064;set=Platypus	GT:AD:AF:DP	1/0:36,11:0.23:47
chr17	46265433	rs2305433	G	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr17	46607021	rs7226137	T	C	6881.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	46620288	rs1042815	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:7,39:0.85:46
chr17	46622335	rs111979968	A	AC	423.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	46622348	rs138169880	A	AC	54.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr17	46622373	rs111401880	C	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr17	46628553	.	A	AG	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.673;QD=0.52;ReadPosRankSum=0.251;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:98,14:0.12:112
chr17	46629593	rs2229304	G	T	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	46629933	rs59742556	A	AC	179.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr17	46632725	rs72332254	AGG	A	1156.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=44.49;SOR=6.593;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	46651061	rs2288277	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	46669430	rs9299	C	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr17	46670520	rs7406798	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	46673618	rs61585154	G	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=6.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-2.141;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:199,42:0.17:241
chr17	46673723	rs12949148	TC	GT	33515.77	.	AC=1;AF=0.500;AN=2;DB;DP=985;JOINED;set=Intersection	GT:AD:AF:DP	0/1:167,813:0.83:980
chr17	46688256	rs7406910	T	C	11924.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr17	46690458	rs56052247	C	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=5.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.311;SOR=0.167;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr17	46690777	rs45441492	A	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=1.490;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:200,35:0.15:235
chr17	46691587	rs112987208	A	AGGCCCCCTGCCC	1215.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr17	46709835	rs718079	A	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.42;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	46799812	rs1054072	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-1.262;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:72,12:0.14:84
chr17	46847364	rs2032844	C	A	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:18,94:0.84:112
chr17	46847524	rs2032843	T	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr17	46847575	rs11868085	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr17	46868710	rs3887854	C	T	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=8.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.88;ReadPosRankSum=-0.262;SOR=0.112;set=HC	GT:AD:AF:DP	0/1:8,67:0.89:75
chr17	46881748	rs489005	T	C	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	46894377	rs3959442	A	C	16328.77	.	AC=1;AF=0.500;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	0/1:145,729:0.83:874
chr17	46923384	rs533842	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-1.144;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:138,24:0.15:162
chr17	46926772	rs551605	A	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	46934007	rs2546495	A	C	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr17	46939658	rs10278	C	G	6476.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:74,286:0.79:360
chr17	46970836	rs684682	A	G	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	46972479	rs3080082	ATCTC	A	2732.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=5.374;QD=4.55;ReadPosRankSum=-0.691;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:496,104:0.17:600
chr17	46973139	rs35074390	TG	T	3161.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	46985756	rs71144541	AG	A	1033.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	46988044	rs999475	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr17	47000128	.	G	GA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=1.066;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr17	47007963	rs2270576	C	T	3579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=1.844;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:42,161:0.79:203
chr17	47010795	rs72523750	CAG	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.120;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:58,9:0.13:67
chr17	47013382	rs140139274	G	GTTTGT	194.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:62,10:0.14:72
chr17	47013717	rs3215074	AT	A	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=2.131;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr17	47014651	rs5820737	CT	C	15817.73	.	AC=1;AF=0.500;AN=2;DB;DP=554;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:104,436:0.81:540
chr17	47014675	rs2132201	C	T	16818.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr17	47014754	rs2132200	T	C	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	47036042	rs55936433	C	A	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:29,80:0.73:109
chr17	47038391	rs6504587	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	47038471	rs4794004	A	G	317.56	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr17	47039132	rs2291725	T	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-2.275;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:187,41:0.18:228
chr17	47039254	rs2291726	T	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:16,80:0.83:96
chr17	47039302	rs8081301	A	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr17	47044463	rs62078384	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=2.127;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:330,62:0.16:392
chr17	47044721	rs369779985	CTTTTT	C	613.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;QD=36.10;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	47076551	rs2411760	G	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	47109368	rs34685424	TG	T	1320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.861;QD=20.32;ReadPosRankSum=2.698;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:12,53:0.82:65
chr17	47109427	rs8079385	C	G	720.96	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:3,31:0.91:34
chr17	47119832	rs2289637	C	T	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:15,70:0.82:85
chr17	47120776	rs2289636	T	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.81;ReadPosRankSum=0.566;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,61:0.80:76
chr17	47122492	rs72833654	G	A	6142.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:39,255:0.87:294
chr17	47210429	rs7207842	A	G	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	47210506	rs7207403	C	A	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	47237802	rs1523137	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	47238028	rs8071836	C	T	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	47241604	rs8074457	T	C	6828.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	47241642	rs72835417	G	A	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:29,92:0.76:121
chr17	47243622	rs16970025	G	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.868;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr17	47280301	rs4794029	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.045;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:196,44:0.18:240
chr17	47293848	rs2233368	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.085;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:64,11:0.15:75
chr17	47297297	rs616338	T	C	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.00;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	47299789	rs55978930	A	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:13,69:0.84:82
chr17	47390136	rs11654557	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=6.568;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-3.144;QD=1.18;ReadPosRankSum=-0.266;SOR=1.499;set=HC	GT:AD:AF:DP	0/1:99,20:0.17:119
chr17	47484228	rs2233667	G	C	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:27,159:0.85:186
chr17	47484286	rs2233666	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=4.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-0.761;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:123,19:0.13:142
chr17	47583581	rs55759007	A	G	3255.74	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:13,119:0.90:132
chr17	47588000	rs11466155	C	T	7759.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:92,331:0.78:423
chr17	47685200	rs17644409	C	G	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:31,176:0.85:207
chr17	47688881	rs140209761	T	TAGAG	2520.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	47696586	rs2066747	GA	G	10413.73	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:72,319:0.82:391
chr17	47779288	rs34701118	C	CA	777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=1.337;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:41,64:0.61:105
chr17	47780710	rs10595474	GCA	G	1094.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.41;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	47783464	.	CT	C,CTT	298.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=0.277;SOR=0.551;set=HC	GT:AD:AF:DP	1/2:7,19,16:0.45,0.38:42
chr17	47785064	rs9908959	C	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	47801651	rs11079874	A	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	47888852	rs4462645	A	G	5565.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	47923640	rs11297059	AT	A	1073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.489;QD=11.93;ReadPosRankSum=0.138;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:12,78:0.87:90
chr17	48068720	rs8081044	T	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	48070741	rs2303467	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.138;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:86,16:0.16:102
chr17	48070878	rs2303466	C	T	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.521;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:625,134:0.18:759
chr17	48151908	rs4793639	T	C	8306.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:66,352:0.84:418
chr17	48154284	rs138215272	C	G	3527.89	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:17,152:0.90:169
chr17	48155771	rs16948648	C	T	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:22,92:0.81:114
chr17	48157827	.	GGTGTGTGT	G,GGT	734.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.436;QD=33.40;ReadPosRankSum=-1.270;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:1,6,15:0.27,0.68:22
chr17	48165064	rs12951197	T	C	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr17	48167575	rs36103008	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.472;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:166,28:0.14:194
chr17	48172779	rs7221362	A	C	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	48174908	rs9839	C	T	5698.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:42,242:0.85:284
chr17	48182659	rs9902933	G	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr17	48183471	rs11237	G	T	6944.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:49,300:0.86:349
chr17	48183497	rs140747393	G	A	5977.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:38,234:0.86:272
chr17	48184288	rs847694	G	A	8410.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	48184377	rs847693	A	G	8502.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	48186131	rs3059824	T	TCTC	4937.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	48191854	rs9890968	T	C	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:11,60:0.85:71
chr17	48202135	.	G	GCGCGCACACA,GCGCGCACA	620.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=19;set=Intersection	GT:AF:DP	1/1:0.83:18
chr17	48212647	rs11317638	GA	G	1313.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=35.51;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	48212876	rs3744536	C	T	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:15,69:0.82:84
chr17	48226445	rs112058541	G	GC	2444.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr17	48227384	.	G	GGC	7337.73	.	AC=2;AF=1.00;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	48227403	.	G	GGC	6434.73	.	AC=2;AF=1.00;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	48243504	rs9911548	C	T	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	48245180	rs2696297	C	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.295;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.527;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:166,35:0.17:201
chr17	48245269	rs59944537	C	A	9945.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:103,432:0.81:535
chr17	48248906	rs1046329	C	G	6426.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:61,255:0.81:316
chr17	48249450	rs2696293	C	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.370;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:229,41:0.15:270
chr17	48252804	rs2696288	T	C	10024.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr17	48258140	rs2586484	T	C	6957.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,253:1.00:254
chr17	48258284	.	GA	G	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.306;QD=1.72;ReadPosRankSum=-0.601;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:145,49:0.25:194
chr17	48258321	rs2586485	C	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=4.637;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.745;QD=3.03;ReadPosRankSum=1.368;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:127,36:0.22:163
chr17	48262775	rs1061237	A	G,T	1608.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=65;set=Intersection	GT:AF:DP	1/2:0.22,0.78:65
chr17	48263903	rs2277632	A	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.045;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:161,37:0.19:198
chr17	48264717	rs2696245	C	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	48265495	rs1800215	T	C	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr17	48266669	rs2586489	G	C	12280.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	48267585	rs2075558	A	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.652;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=5.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.320;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:270,43:0.14:313
chr17	48268223	rs2734272	A	G	9174.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr17	48268626	rs2696246	A	G	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	48269302	rs2857396	G	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.311;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:344,59:0.15:403
chr17	48269903	rs2696247	A	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.307;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:250,39:0.13:289
chr17	48273439	rs2734281	T	C	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	48273464	rs2141279	T	C	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	48274291	rs2075555	T	G	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr17	48274309	rs2075554	T	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr17	48276004	rs5820805	G	GC	1291.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	48276971	rs2256835	G	C	3777.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:39,165:0.81:204
chr17	48277059	rs150854949	AGCCCCAGGCCCCAGGCCCCAG	A,AGCCCCAGGCCCCAG	6221.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=189;MQ=60.34;set=Intersection	GT:AF:DP	1/2:0.85,0.15:151
chr17	48356260	rs6504642	G	C	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.585;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:422,81:0.16:503
chr17	48423418	.	G	C	52	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5246;HP=6;HapScore=2;MGOF=26;MMLQ=22;MQ=60.0;NF=3;NR=1;PP=52;QD=21.6928031368;SC=GTGGAGGAGGGGGGGCGGCTC;SbPval=0.8;Source=Platypus;TC=6;TCF=4;TCR=2;TR=4;WE=48423426;WS=48423408;set=Platypus	GT:AD:AF:DP	1/0:2,4:0.67:6
chr17	48431032	rs739990	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-1.134;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:139,34:0.20:173
chr17	48431197	rs739989	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.482;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:121,22:0.15:143
chr17	48432042	rs11430429	G	GA	2914.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	48432324	rs12451299	G	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.546;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:213,36:0.14:249
chr17	48432749	rs73344091	G	C	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:35,94:0.73:129
chr17	48433081	rs886568	G	A	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	48433958	rs4794136	T	C	19257.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr17	48440467	.	T	TA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.761;QD=0.22;ReadPosRankSum=-0.441;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:196,39:0.17:235
chr17	48440522	rs10656180	T	TCCA	15178.73	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	48445674	rs111380254	CCTGGTCAG	C	3842.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr17	48446130	rs17776853	A	G	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.74;ReadPosRankSum=1.395;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:10,52:0.84:62
chr17	48448023	rs16948951	C	G	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr17	48452776	rs3760413	A	C	6815.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr17	48452978	rs3060668	A	AAGC	18142.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	48455985	rs2189712	A	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.051;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr17	48456193	rs12450550	T	C	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.665;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=4.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.773;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:159,25:0.14:184
chr17	48457567	rs917029	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.181;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr17	48457609	rs917028	C	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr17	48472270	rs3760407	C	T	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	48474501	rs72832501	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.698;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:120,22:0.15:142
chr17	48598785	rs1380657	G	A	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:27,111:0.80:138
chr17	48599195	rs9893172	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	48599450	rs7216625	A	T	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:24,89:0.79:113
chr17	48602098	rs373928628	T	TGTGAGAGA	1752.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.20;MQRankSum=0.793;QD=33.71;ReadPosRankSum=2.074;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,41:0.79:52
chr17	48603503	rs9890721	C	T	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:26,105:0.80:131
chr17	48603775	rs149225883	C	CTATTTATT	429.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;MQ=61.69;set=Intersection	GT:AD:AF:DP	0/1:1,12:0.92:13
chr17	48604679	rs61754788	G	C	7413.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:73,323:0.82:396
chr17	48605780	rs8067733	C	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:14,69:0.83:83
chr17	48606313	rs2290864	G	A	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:19,95:0.83:114
chr17	48606537	rs1133818	C	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chr17	48606606	rs4793659	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr17	48607280	rs6504671	G	C	3776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.60;ReadPosRankSum=0.537;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:38,165:0.81:203
chr17	48607614	rs4794156	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr17	48608717	rs1064055	T	C	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:14,92:0.87:106
chr17	48608951	rs2277627	C	T	397.84	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr17	48610272	rs755046	G	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr17	48613837	rs3785915	A	G	5943.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:75,258:0.77:333
chr17	48617493	rs62059698	A	G	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:14,77:0.85:91
chr17	48625543	rs12943759	G	A	4580.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:39,182:0.82:221
chr17	48629458	rs8065903	A	G	5079.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:52,222:0.81:274
chr17	48646346	.	A	AGTGTGTGTGT,AGTGTGTGT	607	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=18;MQ=61.11;NF=3,3;NR=42,42;PP=607,44;QD=13.5555555556;SC=CCTGCAGGTGAGTGTGTGTGT;SbPval=0.57;Source=Platypus;TC=75;TCF=5;TCR=70;TR=45,45;WE=48646354;WS=48646336;set=Platypus	GT:AF:DP	0/1:0.60:75
chr17	48646376	rs58450142	T	TGTGTGTGTGTTG,TGTGTGTGTGTGTTG	1056.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.24;QD=40.64;SOR=3.098;set=HC	GT:AD:AF:DP	1/2:0,14,12:0.54,0.46:26
chr17	48647011	rs12946808	T	G	6061.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:50,255:0.84:305
chr17	48652875	rs198550	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	48653354	rs12449998	C	A	21280.77	.	AC=1;AF=0.500;AN=2;DB;DP=1110;set=Intersection	GT:AD:AF:DP	0/1:196,905:0.82:1101
chr17	48668013	rs8064333	G	C	8530.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:50,217:0.81:267
chr17	48668021	rs34926473	AT	A	8366.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:49,200:0.80:249
chr17	48668091	rs8066026	A	C	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:21,85:0.80:106
chr17	48668653	rs7359536	A	G	532.56	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr17	48668720	rs7359527	C	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr17	48669026	rs11079918	T	C	3547.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:35,145:0.81:180
chr17	48678325	rs198530	A	T	9604.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	48687430	rs11658835	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr17	48692881	rs8066527	C	T	5639.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:38,242:0.86:280
chr17	48693760	rs4794171	G	C	1713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=-1.537;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:15,77:0.84:92
chr17	48698906	rs4794172	C	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,44:0.83:53
chr17	48703752	rs739925	T	C	9406.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:72,360:0.83:432
chr17	48712705	rs12604031	G	A	5125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.11;ReadPosRankSum=0.186;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:23,123:0.84:146
chr17	48712711	rs9890046	C	G	5147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.87;ReadPosRankSum=0.599;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:25,127:0.84:152
chr17	48738266	rs2301837	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.155;SOR=0.049;set=HC	GT:AD:AF:DP	0/1:68,10:0.13:78
chr17	48746135	rs879459	C	T	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	48746923	rs4794176	G	C	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	48752600	rs4148415	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-1.083;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr17	48752866	rs2072365	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.471;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr17	48761105	rs2277624	C	T	5272.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:35,233:0.87:268
chr17	48768486	rs1051640	A	G	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:15,78:0.84:93
chr17	48797210	rs11398903	T	TG	5277.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	48917333	rs9675120	C	T	15513.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:133,644:0.83:777
chr17	48940422	rs4626	T	C	4093.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:42,170:0.80:212
chr17	48941417	.	C	CAAA	31.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.58;ReadPosRankSum=0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr17	49041948	.	C	CA	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=1.271;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr17	49054439	rs9332407	T	C	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	49060107	rs12453116	T	G	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	49067763	rs9899816	T	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	49076907	rs61490626	TA	T	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr17	49084471	.	GGT	G	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.980;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr17	49097501	rs2286649	C	A	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.335;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	49124845	rs11400140	G	GA	888.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	49124944	rs12453437	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	49156907	rs8081821	A	G	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	49197654	rs5820842	A	AC	867.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.99;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	49231623	rs34431255	C	G	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	49231627	rs11556835	G	A	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	49247503	.	C	CT	194.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.953;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr17	49270643	rs35987233	AT	A	209.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	49271018	rs12453388	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	49350546	rs35339641	AT	A	187.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	49711045	rs2286634	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr17	49713428	rs139939914	GACAT	G	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.000;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr17	50149899	rs5820905	C	CT	732.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.466;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.000;QD=15.27;ReadPosRankSum=-0.757;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:6,42:0.88:48
chr17	51901084	rs3803825	A	G	8645.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	51901385	rs3803826	C	T	8732.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	51901643	rs4561518	C	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	51901703	rs4561519	C	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	51902252	rs3826355	C	T	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	51902492	rs10693171	A	AAAT	1650.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	52993346	rs2934935	G	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	53014442	rs5821078	C	CT	1572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=1.381;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:36,103:0.74:139
chr17	53076799	rs1156287	G	A	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	53076986	rs11658717	G	A	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	53084697	rs141409093	CT	C	491.37	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:4,28:0.88:32
chr17	53084790	rs12051573	C	T	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	53121020	rs17818142	A	G	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	53124546	.	CGTGTGTGT	C,CGT	905.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=36;set=Intersection	GT:AF:DP	1/2:0.29,0.67:24
chr17	53158361	rs2628302	G	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	53158492	rs8069999	G	A	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	53342796	rs10635027	G	GTTTC	10519.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr17	53478675	rs3744308	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	53828706	rs890488	C	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	53844833	rs57156382	CT	C	2578.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	53844847	rs35430620	C	T	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	53851071	rs2960063	A	G	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	53851078	rs2912558	T	C	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	53851228	rs2960062	C	T	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	53852111	rs2960061	T	C	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	54450038	rs957724	C	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr17	54450134	rs8069322	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=1.060;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:103,19:0.16:122
chr17	54526301	rs2024316	C	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.224;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr17	54558282	.	GTA	G	135	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=28;MQ=59.33;NF=0;NR=6;PP=135;QD=23.0;SC=GTGTGTGTGTGTAAATTTTCC;SbPval=1.0;Source=Platypus;TC=25;TCF=1;TCR=24;TR=6;WE=54558292;WS=54558272;set=Platypus	GT:AD:AF:DP	1/0:19,6:0.24:25
chr17	54558284	rs11079234	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr17	54892126	rs4794668	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	54893318	rs117984213	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr17	54912737	rs7225724	A	G	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	54921322	rs3760157	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	54921494	rs3760158	A	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	54925262	rs6503775	G	T	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	54925480	rs56356802	C	CAT,CATAT	1729.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;set=Intersection	GT:AF:DP	1/2:0.18,0.82:49
chr17	54939715	rs9911560	T	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	54939737	rs3826295	T	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	54968181	.	C	T	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=2.463;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:265,46:0.15:311
chr17	54978794	rs205498	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:17,65:0.79:82
chr17	54981571	.	CA	C	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=0.171;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:141,68:0.33:209
chr17	54990652	rs59740850	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.352;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr17	55026912	rs12942251	A	G	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	55027850	rs8071691	T	C	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	55028170	rs61731978	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.815;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:96,16:0.14:112
chr17	55038062	rs9899845	T	C	431.78	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr17	55055408	.	TCAGGCCCCGCCCCCGACCCG	T	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.70;ReadPosRankSum=0.316;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr17	55055741	rs71139945	CT	C	559.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.275;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:14,39:0.74:53
chr17	55058689	rs3095499	G	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	55065530	rs12453004	A	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:9,60:0.87:69
chr17	55065558	rs11437466	T	TA	2278.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	55074482	.	T	TA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.013;QD=0.84;ReadPosRankSum=0.763;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:94,25:0.21:119
chr17	55075582	rs1811258	A	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.092;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.122;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr17	55075670	rs367630962	CA	C	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.219;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:136,64:0.32:200
chr17	55075928	rs12941709	C	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-2.243;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:130,21:0.14:151
chr17	55182811	rs3833091	CT	C	2261.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:12,68:0.85:80
chr17	55183203	rs2230772	T	C	12095.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:123,529:0.81:652
chr17	55183716	rs1050515	T	C	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,68:0.76:90
chr17	55187278	rs11079277	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.870;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr17	55189723	rs3094444	T	G	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	55334577	.	GC	G	54.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.81;ReadPosRankSum=0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr17	55334771	.	C	CT	1460.73	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:21,79:0.79:100
chr17	55363421	rs11079286	G	C	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr17	55674375	rs74783910	G	T	1922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.49;ReadPosRankSum=0.258;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:25,79:0.76:104
chr17	55704465	rs1861474	A	G	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	55822171	rs12451748	T	C	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	55822214	rs12451753	T	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	55822467	rs12449409	G	A	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	55917353	rs2099914	C	G	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	55946562	rs79637497	G	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.186;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:190,39:0.17:229
chr17	55950300	rs2304943	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=4.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.411;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:117,22:0.16:139
chr17	56083934	rs2233911	G	A	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:27,110:0.80:137
chr17	56235104	rs3863503	C	A	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:38,183:0.83:221
chr17	56235322	rs1987665	G	A	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr17	56247306	rs80043692	G	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=4.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-2.226;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:315,59:0.16:374
chr17	56247454	rs9912728	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.163;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:302,42:0.12:344
chr17	56247575	rs74730740	C	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=4.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.448;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:342,68:0.17:410
chr17	56270121	rs12602891	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr17	56271094	rs11652709	G	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.471;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr17	56272390	rs2240815	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=1.666;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:498,74:0.13:572
chr17	56274781	rs34415223	T	TG	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.852;QD=4.35;ReadPosRankSum=-1.900;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr17	56277171	.	A	AG	798.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=15.166;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.483;QD=3.01;ReadPosRankSum=-0.683;SOR=1.623;set=HC	GT:AD:AF:DP	0/1:212,53:0.20:265
chr17	56282968	rs17174788	G	C	5432.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:35,226:0.87:261
chr17	56289545	rs3213698	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.697;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr17	56290334	rs3826300	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-1.659;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:109,17:0.13:126
chr17	56290556	rs3744105	A	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.650;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr17	56293960	rs7225148	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-1.406;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:125,20:0.14:145
chr17	56321271	rs7219860	G	A	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.314;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:376,85:0.18:461
chr17	56321451	rs369027249	GAC	G	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.265;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr17	56327999	rs7208924	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.598;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr17	56344656	rs8178407	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.952;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:90,19:0.17:109
chr17	56344867	rs8178409	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=1.294;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:249,35:0.12:284
chr17	56351708	rs72051182	AGT	A	228.84	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr17	56357377	.	T	C	812.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr17	56393251	.	G	GGGAT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=9.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.523;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:23,3:0.12:26
chr17	56393840	rs61739511	G	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.039;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:168,36:0.18:204
chr17	56398006	rs2526380	C	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.234;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr17	56404349	rs2526378	A	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr17	56424710	rs757485	T	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.148;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr17	56435885	rs2526374	G	T	4112.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:37,179:0.83:216
chr17	56436109	rs34523089	C	T	2543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.57;ReadPosRankSum=-0.304;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:21,109:0.84:130
chr17	56492800	rs3744093	T	C	10970.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr17	56544280	rs1017089	T	G	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	56569842	rs75741842	T	TGA	13766.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	56580997	rs1860262	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	56581651	rs4277402	C	G	6856.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	56584205	rs2302189	A	C	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	56585872	rs3744108	G	C	6958.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	56598213	rs10719315	GA	G	2639.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	56598439	rs1057068	T	C	6976.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	56603978	rs2079703	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	56609525	rs11869828	G	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	56621286	rs8071623	G	T	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:3,252:0.99:255
chr17	56621359	rs6503867	T	C	7928.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	56636854	rs7225128	T	C	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	56654690	rs1267542	T	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	57049716	.	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.862;QD=1.00;ReadPosRankSum=-1.698;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr17	57057904	.	C	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.592;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:212,39:0.16:251
chr17	57076893	rs4598970	T	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	57089576	.	C	CCAGCAGCAGCAGCAG	2982	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=1;MGOF=30;MMLQ=27;MQ=59.23;NF=61;NR=86;PP=2982;QD=20;SC=ATCACTACCACCAGCAGCAGC;SbPval=0.77;Source=Platypus;TC=169;TCF=79;TCR=90;TR=147;WE=57089584;WS=57089566;set=Platypus	GT:AD:AF:DP	1/1:22,147:0.87:169
chr17	57089588	rs72443487	G	GCAGCAGCAGCAGCAGCAC	5863.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:38,179:0.82:217
chr17	57094617	rs4932691	T	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	57094847	rs4932692	T	C	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.114;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=4.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.864;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:166,43:0.21:209
chr17	57094859	.	A	C	3124.77	.	AC=1;AF=0.500;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:35,141:0.80:176
chr17	57247249	rs9914425	T	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.239;QD=1.43;ReadPosRankSum=-0.904;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:354,71:0.17:425
chr17	57272079	rs2291193	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr17	57287454	rs6503905	A	G	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.922;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:119,32:0.21:151
chr17	57290383	rs3744383	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=5.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-0.317;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:255,36:0.12:291
chr17	57334668	rs12450435	C	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.232;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:200,41:0.17:241
chr17	57474396	rs3214250	GA	G	932.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chr17	57663596	rs58298344	TA	T	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=5.074;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-3.972;QD=2.41;ReadPosRankSum=-0.090;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:100,62:0.38:162
chr17	57717737	rs9910530	C	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	57719360	rs10547125	GT	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.969;QD=0.80;ReadPosRankSum=-0.109;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:91,32:0.26:123
chr17	57719366	rs9899439	T	G	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.971;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.920;QD=4.83;ReadPosRankSum=-0.622;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:78,68:0.47:146
chr17	57721907	rs113812535	T	TTTTG	1334.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=43.06;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	57725043	rs8071749	T	G	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	57733479	rs4349212	T	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	57743691	rs9893154	G	A	5512.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	57750982	rs8065248	T	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	57889192	rs2063353	T	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.880;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:129,25:0.16:154
chr17	57917074	.	A	G	650.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr17	57917342	rs112911537	C	T	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,75:0.84:89
chr17	57937792	.	G	GA	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.913;QD=2.74;ReadPosRankSum=-0.934;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:92,38:0.29:130
chr17	57940977	rs377342839	CA	C	609.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.840;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.688;QD=8.34;ReadPosRankSum=-2.476;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:22,51:0.70:73
chr17	57943906	rs35806089	A	G	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:13,92:0.88:105
chr17	57963537	rs1292053	A	G	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:27,118:0.81:145
chr17	57968398	rs143803908	AC	A	5668.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:41,207:0.83:248
chr17	58011498	rs180524	G	T	4113.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:45,171:0.79:216
chr17	58012768	rs11459613	C	CA	1066.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:16,49:0.75:65
chr17	58018414	rs11377635	C	CT	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=0.795;QD=8.75;ReadPosRankSum=-0.263;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:19,38:0.67:57
chr17	58030551	rs34068842	CT	C	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.113;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.835;QD=10.09;ReadPosRankSum=-0.614;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr17	58031412	rs11368	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr17	58037413	rs111857062	T	C	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:21,93:0.82:114
chr17	58040730	rs4968401	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.604;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.716;SOR=1.450;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr17	58066607	rs200816848	AT	A	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=4.114;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-1.003;QD=1.19;ReadPosRankSum=1.278;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:124,47:0.27:171
chr17	58149745	rs3744375	G	A	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	58153603	.	C	CA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.439;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:106,32:0.23:138
chr17	58180062	rs8075626	T	C	9464.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	58180079	rs8074512	C	G	9412.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	58180172	rs8075789	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	58303313	rs11309727	CA	C	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=8.119;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.663;QD=9.34;ReadPosRankSum=1.260;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr17	58786625	rs2643103	A	G	8967.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	58824567	rs7501675	T	C	5294.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	59001879	.	C	CTT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=7.353;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.710;QD=0.67;ReadPosRankSum=-0.691;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr17	59480289	rs200207014	GAT	G	3778.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.07;MQRankSum=-0.294;QD=42.46;ReadPosRankSum=0.327;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:2,87:0.98:89
chr17	59480291	.	T	G	1153	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=1;MGOF=227;MMLQ=24;MQ=59.99;NF=55;NR=7;PP=1153;QD=19.1576002024;SC=GAAGAACCGATAGAGAGAGAG;SbPval=0.5;Source=Platypus;TC=74;TCF=66;TCR=8;TR=62;WE=59480299;WS=59480281;set=Platypus	GT:AD:AF:DP	1/0:12,62:0.84:74
chr17	59480311	rs202026270	GAGAGAGAGAGAGAGAGAGAGA	G	82.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.89;MQRankSum=0.279;QD=0.98;ReadPosRankSum=-1.035;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:73,11:0.13:84
chr17	59480313	rs140392356	GAGAGAGAGAGAGAGAGAGA	G	2095.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=65.89;MQRankSum=-0.956;QD=24.95;ReadPosRankSum=1.826;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:13,71:0.85:84
chr17	59482165	rs66504335	GC	G	3046.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:12,75:0.86:87
chr17	59482169	rs35619711	C	G	3375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=6.651;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.422;QD=37.10;ReadPosRankSum=0.018;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:12,79:0.87:91
chr17	59482173	rs9891115	G	A	3337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.492;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.409;QD=34.77;ReadPosRankSum=-0.649;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:12,84:0.88:96
chr17	59485393	rs2240736	C	T	9570.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:93,409:0.81:502
chr17	59485555	rs1057987	C	T	13805.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:133,577:0.81:710
chr17	59485880	.	C	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.287;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr17	59489893	rs9907379	T	C	7402.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:56,304:0.84:360
chr17	59544863	rs758596	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=5.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=1.396;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:240,50:0.17:290
chr17	59557755	rs112008276	GCC	G	775.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.94;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	59760996	rs4986763	A	G	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	59763114	rs4988357	A	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr17	59763347	rs4986764	A	G	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	59763465	rs4986765	T	C	7726.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr17	59955426	rs606072	T	G	7083.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	59971067	rs8077835	A	T	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=0.047;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:17,43:0.72:60
chr17	59982085	rs72843757	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr17	60033861	rs79769918	G	A	8012.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:65,319:0.83:384
chr17	60043884	rs671347	G	A	10931.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr17	60070111	rs11375626	G	GT	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	60070140	rs11375627	C	CT	230.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	60142710	.	G	GC	86	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	60215748	rs11079465	T	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	60215768	rs59589773	G	A	281.56	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr17	60217236	rs56068498	A	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	60360238	rs10163525	A	G	13121.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	60360261	rs62069132	T	C	12417.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	60361602	rs150913339	G	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=48.31;MQRankSum=-7.612;QD=1.82;ReadPosRankSum=2.250;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:165,36:0.18:201
chr17	60361652	rs139504127	C	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.32;MQRankSum=-7.476;QD=1.07;ReadPosRankSum=1.085;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:328,56:0.15:384
chr17	60363906	rs202158824	G	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.46;QD=34.08;SOR=7.743;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	60363941	rs148555715	G	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.75;QD=33.81;SOR=8.554;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	60365992	rs149569922	C	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.57;QD=33.33;SOR=4.875;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	60366741	rs2668983	C	G	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.61;QD=25.86;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	60369283	rs143698032	C	T	2919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=46.32;MQRankSum=-1.166;QD=19.60;ReadPosRankSum=-2.449;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:25,124:0.83:149
chr17	60374173	rs202112984	CT	C	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-1.577;QD=6.87;ReadPosRankSum=-0.901;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:33,44:0.57:77
chr17	60464688	rs9909704	C	T	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	60464838	rs111797029	TTCTC	T	612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.541;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=6.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.145;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr17	60472623	rs11079476	C	T	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:21,91:0.81:112
chr17	60493386	rs78388447	A	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-0.015;QD=2.17;ReadPosRankSum=0.680;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:173,39:0.18:212
chr17	60501409	rs11543000	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.634;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:134,27:0.17:161
chr17	60503892	rs2543409	A	G	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	60503921	rs2319055	T	C	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.58;QD=30.09;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	60637258	rs146385050	C	A	377.28	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr17	60651884	rs11314763	GT	G	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.837;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr17	60654327	rs59523807	CT	C,CTTTTTTTTTTT	926.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.26;ReadPosRankSum=1.472;SOR=2.774;set=HC	GT:AD:AF:DP	1/2:1,13,20:0.38,0.59:34
chr17	60654358	rs4539664	G	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	60657334	rs12451705	C	T	1641.53	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:8,68:0.89:76
chr17	60683503	rs8078132	A	G	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:27,90:0.77:117
chr17	60741917	rs2014055	G	A	9626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=-1.267;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:96,419:0.81:515
chr17	60742348	rs2252814	G	T	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	60748926	rs729647	C	T	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	60758273	rs2245463	G	C	10580.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	60759340	rs2429389	A	G	9912.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	60759347	rs2460300	A	G	10054.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	60766224	rs2465430	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	60766483	rs2465429	A	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	60767015	rs2429387	G	A	10409.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	60767151	rs740698	C	T	14643.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr17	60767461	rs2465426	C	G	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	60767953	rs11357719	GC	G	7242.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr17	60768243	rs2465425	A	G	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	60778932	rs2251393	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	60779025	rs2251391	A	G	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	60824224	rs17746153	A	G	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	61087073	rs16946713	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.891;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr17	61315272	rs2460111	G	A	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.411;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:232,48:0.17:280
chr17	61457217	rs8065950	G	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.282;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:274,48:0.15:322
chr17	61473325	rs2270133	C	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.346;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=5.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.670;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chr17	61489968	rs34592714	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.25;ReadPosRankSum=0.267;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:201,46:0.19:247
chr17	61548918	rs4277405	C	T	5370.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:46,222:0.83:268
chr17	61548948	rs4459609	C	A	5831.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:59,250:0.81:309
chr17	61556298	rs4295	C	G	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:28,193:0.87:221
chr17	61556527	rs4296	A	G	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	61559923	rs4309	C	T	5188.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:70,218:0.76:288
chr17	61560763	rs4311	T	C	5132.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:54,217:0.80:271
chr17	61562309	rs4316	C	T	6794.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:75,294:0.80:369
chr17	61562553	rs4320	G	A	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:22,115:0.84:137
chr17	61562774	rs4321	T	C	10964.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:95,463:0.83:558
chr17	61564052	rs4331	A	G	6486.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:67,279:0.81:346
chr17	61564281	rs4332	T	C	3281.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:32,134:0.81:166
chr17	61564522	rs4333	T	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	61565990	rs4341	G	C	7252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.47;ReadPosRankSum=0.333;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:61,177:0.74:238
chr17	61565998	rs4342	A	C	7391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.57;ReadPosRankSum=-0.834;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:62,188:0.75:250
chr17	61566031	rs4343	G	A	5116.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:77,233:0.75:310
chr17	61571210	rs12709437	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.624;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:82,12:0.13:94
chr17	61573761	rs4362	T	C	6576.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:57,291:0.84:348
chr17	61574492	rs4363	G	A	2140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.62;ReadPosRankSum=1.550;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,94:0.82:115
chr17	61600717	rs71376915	A	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	61607708	rs7221517	T	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.204;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=4.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-1.230;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:247,45:0.15:292
chr17	61611423	rs7225568	T	C	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:25,147:0.85:172
chr17	61615371	rs4465659	T	G	4825.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:31,191:0.86:222
chr17	61615660	rs148485289	T	TG	3442.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:21,135:0.87:156
chr17	61621330	rs76957877	C	T	693.94	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr17	61621805	rs8070334	T	G	2958.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:38,125:0.77:163
chr17	61622703	rs12603614	A	G	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:17,67:0.80:84
chr17	61623052	rs35819807	C	T	11415.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:123,487:0.80:610
chr17	61660889	rs66502552	CG	C	9837.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	61710010	rs6504171	G	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	61729882	rs8080211	A	G	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	61735056	rs6504173	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.27;SOR=3.109;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	61763031	rs11658329	G	C	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	61766880	rs1877316	C	A	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr17	61769456	rs7211213	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	61776479	rs1877317	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	61776538	rs3817181	G	C	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	61781105	rs9915192	G	A	5092.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:50,215:0.81:265
chr17	61781980	rs66871703	TG	T	4539.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=38.47;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	61781984	rs372457035	G	T	2656.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.323;QD=25.30;ReadPosRankSum=0.175;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:8,97:0.92:105
chr17	61782325	rs9897229	T	C	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	61783908	rs3817182	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	61805607	rs2137144	G	A	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	61805747	rs4968597	G	A	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	61829157	rs11283431	A	ATAGTGTT	4103.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	61829856	.	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.170;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr17	61829989	rs3785572	C	T	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	61838259	rs11654841	G	A	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	61870024	.	A	AT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.023;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr17	61877666	rs3833115	AAT	A	2149.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	61884120	rs2251164	G	A	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	61888693	rs2584629	T	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	61889213	rs3217509	G	GA	7898.73	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	61898063	rs3833114	C	CGCTTGAACCTGGAAGACGG	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	61898129	rs200532699	C	CA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-2.639;QD=1.27;ReadPosRankSum=1.697;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr17	61898135	rs2665836	C	A	1029.88	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:7,48:0.87:55
chr17	61901197	rs2727288	T	A	7704.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr17	61901439	rs2584627	T	C	11075.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	61901641	rs894407	T	C	14241.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	61901657	rs894406	A	G	14639.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	61901880	rs752621	G	C	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	61902822	rs716880	C	G	14484.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr17	61903445	rs2584625	G	C	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	61904337	rs141581810	TCCACTTCCAGTTTC	T	2845.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	61904465	rs28362566	C	CG	929.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	61904724	rs2665834	T	C	6593.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	61904728	rs2727287	G	A	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=1.215;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	61906846	rs2665833	T	C	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	61908055	rs55833669	CT	C	1508.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:6,83:0.93:89
chr17	61908271	rs968719	C	T	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	61908316	rs7220892	G	A	6275.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	61912261	rs2665832	C	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	61958669	rs2006123	G	T	21146.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:6,805:0.99:811
chr17	61986027	rs2854152	A	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	61987405	rs2006122	A	T	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	61988594	rs138842521	G	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.570;QD=2.19;ReadPosRankSum=3.205;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:144,35:0.20:179
chr17	62006497	rs1051684	A	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	62007498	rs2070776	A	G	12179.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	62018773	rs2070720	T	C	10321.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:83,443:0.84:526
chr17	62019103	rs56342400	G	T	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.495;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.972;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:612,120:0.16:732
chr17	62020348	rs2058194	T	C	11416.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr17	62020563	rs150461653	CAGAGATGACAGAG	C,CAG	2884.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=137;set=Intersection	GT:AF:DP	1/2:0.77,0.22:86
chr17	62021374	rs11869827	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr17	62022659	rs58028318	A	AG	3442.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	62025238	rs13341114	G	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:13,67:0.84:80
chr17	62028920	rs41280102	C	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.897;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:242,51:0.17:293
chr17	62041068	rs6504191	T	C	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	62041317	rs2331408	G	T	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	62042078	rs2877373	T	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	62045293	rs11418006	C	CA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.241;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr17	62048467	rs2302236	A	G	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	62048707	rs2302237	C	T	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	62049235	rs9892013	A	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	62075994	rs76735942	G	GA	4135.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:15,116:0.89:131
chr17	62076077	rs62070903	C	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-0.743;QD=0.81;ReadPosRankSum=0.985;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:134,25:0.16:159
chr17	62079286	rs12939821	G	A	5921.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:56,250:0.82:306
chr17	62079334	rs11079520	A	G	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.467;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-2.888;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:173,40:0.19:213
chr17	62080969	rs4141180	A	C	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	62083929	rs6504194	A	G	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	62121480	rs196912	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	62122145	rs196915	A	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	62122677	rs196917	G	A	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	62123022	rs196918	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	62125272	rs196923	A	G	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	62125411	rs75933115	T	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:27,121:0.82:148
chr17	62130389	rs10689374	G	GCCT	2435.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	62130937	rs196929	T	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	62132309	rs196931	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	62141455	rs187826	A	G	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	62145672	rs196939	A	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	62145728	rs196940	A	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	62152611	rs3044067	T	TAA	844.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.720;QD=20.11;ReadPosRankSum=-1.960;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:4,38:0.90:42
chr17	62156933	rs196947	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	62158012	rs196950	T	C	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	62158278	rs196951	T	C	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	62158300	rs196952	C	T	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	62158319	rs196953	T	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	62232073	rs4968693	A	T	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:23,96:0.81:119
chr17	62254983	rs1967130	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	62265838	rs36104018	TC	T	3894.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	62270785	rs2166290	T	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	62270823	rs72009320	GCTTC	G	610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=4.059;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.411;QD=3.36;ReadPosRankSum=1.967;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:155,27:0.15:182
chr17	62270941	rs34343500	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.602;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.09;ReadPosRankSum=0.357;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:365,44:0.11:409
chr17	62385609	rs113369705	A	AAAACAAAC	1992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.000;QD=40.67;ReadPosRankSum=-1.436;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:6,43:0.88:49
chr17	62386078	rs28670385	T	C	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:19,77:0.80:96
chr17	62406986	rs45495798	G	A	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:18,98:0.84:116
chr17	62407030	rs45588632	A	G	3958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=5.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=-0.042;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:27,163:0.86:190
chr17	62463825	rs199721035	T	TG	1910.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	62464412	.	C	CT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=2.606;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.730;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:135,31:0.19:166
chr17	62496670	rs1140409	A	C	4743.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:32,198:0.86:230
chr17	62502435	rs1991401	A	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	62506274	rs66540667	AT	A	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.806;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:688,124:0.15:812
chr17	62530885	rs145444747	TAAG	T	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.672;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:222,31:0.12:253
chr17	62754586	rs9908143	T	C	5812.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:35,244:0.87:279
chr17	62758984	rs11374577	G	GC	1883.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	62782689	rs6504255	T	C	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	62796759	.	A	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-11.315;QD=0.17;ReadPosRankSum=0.127;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:256,34:0.12:290
chr17	62796833	.	A	T	1976.77	.	AC=1;AF=0.500;AN=2;DP=298;set=Intersection	GT:AD:AF:DP	0/1:198,100:0.34:298
chr17	62924044	rs6504263	G	A	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	62952689	rs3960389	C	G	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	63052344	rs12945514	G	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr17	63052361	rs7216195	C	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	63133804	rs2585858	A	G	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	63173756	rs9896245	A	G	4982.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:61,223:0.79:284
chr17	63173959	rs11651062	C	T	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:17,109:0.87:126
chr17	63197920	rs2292593	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	63200479	rs79965148	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr17	63532767	rs28684769	C	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	63532914	rs28760438	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	63533624	rs141014640	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=2.017;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:226,37:0.14:263
chr17	63533768	rs1133683	G	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	63533789	rs9915936	T	C	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	63533919	rs115931022	T	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.323;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:144,25:0.15:169
chr17	63534250	rs8078753	T	C	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	63534538	rs4541111	C	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	63554591	rs2240308	G	A	6294.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:43,261:0.86:304
chr17	64023624	rs17704679	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.763;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr17	64024255	rs56239919	A	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=3.466;QD=2.62;ReadPosRankSum=-0.610;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr17	64024303	rs4277386	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.057;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=3.412;QD=1.33;ReadPosRankSum=1.091;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr17	64024340	rs9901053	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=3.051;QD=1.44;ReadPosRankSum=0.599;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr17	64024375	rs9899985	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.425;QD=0.77;ReadPosRankSum=0.810;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:98,17:0.15:115
chr17	64025926	rs9908964	G	T	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	64049733	rs1401049	A	G	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	64050062	rs1401048	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	64059331	rs28418652	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr17	64062830	rs908713	T	A	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	64173170	rs2159557	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.623;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:130,23:0.15:153
chr17	64179508	rs111614581	T	A	1027.84	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:4,41:0.91:45
chr17	64208230	rs6933	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.16;ReadPosRankSum=0.807;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:196,29:0.13:225
chr17	64208396	rs1558359	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.123;SOR=0.181;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr17	64210528	rs1544556	G	A	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.325;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr17	64213104	rs2041398	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.138;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:122,17:0.12:139
chr17	64216644	rs3744317	G	A	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	64221994	.	C	CAA	794.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=6.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.41;ReadPosRankSum=-1.981;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:3,24:0.89:27
chr17	64222164	rs1801692	C	T	4430.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:44,189:0.81:233
chr17	64550701	rs35476409	AGGTG	A	5569.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:35,136:0.80:171
chr17	64735035	rs5821506	C	CT	4246.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr17	64783081	rs6504459	G	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=2.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.327;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:258,56:0.18:314
chr17	64785022	rs2228945	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=1.395;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:158,33:0.17:191
chr17	64785191	rs11420909	T	TG	1584.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	64875035	rs2286676	C	T	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	64881075	rs2286678	A	G	14600.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:1,541:1.00:542
chr17	64961276	.	CCA	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-3.438;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr17	65104666	rs11657929	T	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.745;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:109,21:0.16:130
chr17	65104743	rs11653020	G	A	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.957;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:154,34:0.18:188
chr17	65110436	rs2302158	A	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.110;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:117,31:0.21:148
chr17	65116491	rs12709454	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.592;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:96,18:0.16:114
chr17	65156919	rs1035176	G	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.153;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr17	65184412	rs72838437	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=7.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.384;SOR=0.102;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr17	65191647	rs3213753	T	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.128;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:104,21:0.17:125
chr17	65197158	rs7218955	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.033;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:197,39:0.17:236
chr17	65199336	rs72838452	A	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.154;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.256;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr17	65199627	rs1894928	T	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.879;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:149,34:0.19:183
chr17	65342066	rs17647947	T	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	65528801	rs2304278	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	65548540	rs2916133	G	T	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	65549847	rs2570046	A	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	65574283	rs2570035	A	G	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	65574437	rs8082003	A	G	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:22,154:0.88:176
chr17	65665608	rs36013607	AT	A	608.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	65714359	rs3760226	G	A	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	65718798	rs5821454	TA	T	228.86	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr17	65718839	rs999043	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	65720346	rs11654692	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.567;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr17	65722849	rs3744268	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	65730404	rs4790943	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	65732959	rs7223990	A	G	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	65734514	rs1542610	A	G	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	65735872	rs12948027	A	G	229.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.16;ReadPosRankSum=1.651;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr17	65736725	rs11439892	C	CA,CAA	413.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=0.088;SOR=1.329;set=HC	GT:AD:AF:DP	1/2:3,9,12:0.38,0.50:24
chr17	65737016	rs34886243	CT	C	652.75	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:4,36:0.90:40
chr17	65739789	rs2286917	A	G	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.84;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	65739789	.	ACTTACTCA	GCTTACTCA,GCTTACTCT	1663	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=18;MQ=60.0;NF=69,12;NR=63,11;PP=1663,115;QD=12.8619031254;SC=TCCTTAAATAACTTACTCATG;SbPval=0.56;Source=Platypus;TC=132;TCF=69;TCR=63;TR=132,23;WE=65739805;WS=65739779;set=Platypus	GT:AF:DP	0/1:1.00:132
chr17	65739797	rs2286918	A	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.829;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:119,23:0.16:142
chr17	65821481	rs12945266	C	T	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	65871668	rs200947015	G	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=3.153;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:129,29:0.18:158
chr17	65882457	rs8072824	T	A	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	65906925	rs6504552	A	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.522;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr17	65955651	rs8068790	T	C	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	65962538	rs5821446	A	AT	2205.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	65972188	rs61489754	TA	T	371.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-0.890;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr17	65977682	rs7502707	T	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr17	65988049	rs9891146	T	C	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	65989041	.	C	G	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.029;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:175,35:0.17:210
chr17	65989048	rs28368756	T	C	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.48;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	66036943	rs141699894	T	TG	1564.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.52;SOR=2.437;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	66038181	rs62084696	C	G	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	66039350	rs4638	A	G	7032.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	66039618	rs35594666	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	66122027	rs374673808	TA	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=9.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.968;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:55,22:0.29:77
chr17	66122038	rs7210681	A	G	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.900;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:67,14:0.17:81
chr17	66124489	rs2240606	G	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.656;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:153,33:0.18:186
chr17	66195838	rs78733882	A	T	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.465;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:466,87:0.16:553
chr17	66246416	rs3213690	A	G	3325.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:24,126:0.84:150
chr17	66247426	rs58359332	A	ACTGTATAG	1758.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr17	66265367	rs199555462	T	C	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.362;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.98;MQRankSum=-0.382;QD=20.52;ReadPosRankSum=0.544;SOR=3.171;set=HC	GT:AD:AF:DP	0/1:8,42:0.84:50
chr17	66267691	rs7222013	A	T	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:14,88:0.86:102
chr17	66364749	rs1558877	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.771;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:139,21:0.13:160
chr17	66364804	rs1558878	T	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.716;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:247,45:0.15:292
chr17	66424923	rs1002446	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.912;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr17	66425995	rs3785610	T	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.503;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr17	66425997	rs3785611	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.683;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr17	66440514	rs1030098	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.838;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr17	66447073	rs2302783	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.335;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr17	66453410	rs71378929	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.277;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:146,25:0.15:171
chr17	66453572	rs146213184	GGCCCGGGAA	G	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.631;QD=2.43;ReadPosRankSum=0.705;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:88,13:0.13:101
chr17	66524987	rs2302230	G	A	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	66526027	rs2302231	G	T	4465.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	66533655	rs2907373	A	G	7151.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	66533979	rs2286556	C	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	66536219	rs2286558	G	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	66538239	rs2302234	G	T	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr17	66539847	rs2286562	C	T	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	66547829	.	A	AATT	486.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.44;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	66872802	rs1481	G	C	7085.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	66880081	rs8080098	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	66880371	rs1470293	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	66883719	rs6501839	A	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	66890117	rs4148000	C	G	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	66925116	rs4147980	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.069;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr17	66925443	.	A	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.563;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr17	66925910	rs4147977	T	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:43,13:0.23:56
chr17	66925923	rs4147976	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=2.006;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr17	66933003	rs4147967	C	T	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr17	66972250	rs2191212	A	T	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	66985992	rs2302294	T	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	66986162	rs9902444	A	C	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	66987202	rs2302293	A	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	67023755	rs6501947	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	67024585	rs12940103	T	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	67024799	rs8066758	T	A	3176.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	67028260	rs2302291	T	C	6939.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	67031369	rs1860448	T	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	67031457	rs1860447	C	T	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	67075294	rs2302289	C	T	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	67080770	rs11657954	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-0.014;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr17	67081161	rs62082719	G	A	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:26,98:0.79:124
chr17	67081660	rs35438104	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.521;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr17	67081732	rs2302133	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.376;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr17	67081830	rs2302134	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.172;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:145,30:0.17:175
chr17	67099129	rs2364315	A	G	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr17	67101718	rs7212506	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	67109662	rs11659091	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.668;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr17	67109673	rs7504026	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.702;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr17	67119593	rs4603621	G	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.857;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr17	67125840	rs4968839	C	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.038;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr17	67131029	rs58333377	C	CTTTTTTTTTTT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.934;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.856;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr17	67132022	rs7219200	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.108;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:92,14:0.13:106
chr17	67146149	rs141260911	G	A	1578.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.078;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.55;ReadPosRankSum=0.162;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:4,66:0.94:70
chr17	67152893	.	CAAAT	C	37	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=8;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=37;QD=29.0;SC=AAAACAAAAACAAATAAATAA;SbPval=1.0;Source=Platypus;TC=13;TCF=12;TCR=1;TR=2;WE=67152904;WS=67152883;set=Platypus	GT:AD:AF:DP	0/1:11,2:0.15:13
chr17	67160186	rs7208382	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-1.790;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr17	67170736	rs740520	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.169;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr17	67171748	.	A	G	36	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=13;MMLQ=28;MQ=60.0;NF=2;NR=2;PP=36;QD=17.6928031368;SC=GAAAAACTCTAGAAGCATTCA;SbPval=0.47;Source=Platypus;TC=19;TCF=7;TCR=12;TR=4;WE=67171756;WS=67171738;set=Platypus	GT:AD:AF:DP	0/1:15,4:0.21:19
chr17	67178976	rs60708995	GA	G	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.979;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=2.181;QD=1.90;ReadPosRankSum=-0.794;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr17	67181540	rs11658738	C	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.638;SOR=1.877;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr17	67181548	rs11655199	T	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.694;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr17	67188576	rs8070232	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr17	67188668	rs8074259	T	C	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	67212031	rs11077414	A	G	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-1.073;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:244,61:0.20:305
chr17	67212423	rs9909216	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.331;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr17	67212574	rs9912127	A	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:43,13:0.23:56
chr17	67215712	rs12941264	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.597;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr17	67219703	rs11655507	G	A	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr17	67220060	rs1468513	T	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr17	67245941	rs1420904	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	67252275	rs80160851	C	T	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.196;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:163,50:0.23:213
chr17	67257529	rs78123766	C	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr17	67260926	rs12449649	A	G	1038.18	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:5,42:0.89:47
chr17	67267317	rs557491	T	C	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.447;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:180,42:0.19:222
chr17	67273882	rs536009	C	A	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	67274054	rs12452340	C	A	518.78	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr17	67279959	rs56193366	C	CAGTA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	67280310	rs564426	A	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	67282332	rs1550828	T	C	4309.78	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:23,182:0.89:205
chr17	67287327	rs34164530	G	GT	1028.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:17,58:0.77:75
chr17	67290644	rs2441358	C	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.494;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.037;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr17	67293535	rs487382	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	67293580	rs568536	C	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr17	67297176	rs12938097	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr17	67512924	rs35105918	G	GTT	1285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=4.263;QD=3.16;ReadPosRankSum=-0.781;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:349,58:0.14:407
chr17	67513003	rs1133228	C	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.568;QD=0.65;ReadPosRankSum=0.720;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:552,87:0.14:639
chr17	67513055	rs2251855	A	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.579;QD=0.58;ReadPosRankSum=-0.485;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:408,64:0.14:472
chr17	69334502	rs5821838	C	CT	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=6.715;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.685;QD=4.12;ReadPosRankSum=-0.578;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr17	69334553	rs4401085	G	C	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	69334971	.	TATTTC	T	1284.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.54;QD=41.44;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	69334972	.	A	C	710	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=7;HapScore=1;MGOF=8;MMLQ=24;MQ=63.98;NF=8;NR=21;PP=710;QD=25.6817659499;SC=TGTTTCTTTTATTTCCTTTCT;SbPval=0.65;Source=Platypus;TC=30;TCF=9;TCR=21;TR=29;WE=69335011;WS=69334962;set=Platypus	GT:AD:AF:DP	1/1:1,29:0.97:30
chr17	69334981	rs59439845	CTTTCTTTCTTCCTTCCTTTCTTT	C	1213.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.54;QD=41.85;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	70845688	rs12449747	C	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=5.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-1.278;SOR=1.995;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr17	70845949	rs34998299	CAA	C	856.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.345;QD=5.60;ReadPosRankSum=-1.415;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:104,49:0.32:153
chr17	70943990	rs2466517	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	71027543	rs9912666	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	71081078	rs9891809	G	A	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	71189155	.	A	AGG	1024	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5001;HP=7;HapScore=1;MGOF=36;MMLQ=24;MQ=59.31;NF=15;NR=8;PP=1024;QD=45.652173913;SC=AAGATGGCGGAGGGGGCGGGA;SbPval=0.59;Source=Platypus;TC=31;TCF=20;TCR=11;TR=23;WE=71189163;WS=71189145;set=Platypus	GT:AD:AF:DP	0/1:8,23:0.74:31
chr17	71189182	rs3764359	A	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:10,47:0.82:57
chr17	71192468	rs1052705	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr17	71192663	rs1052706	G	A	3808.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:33,153:0.82:186
chr17	71192873	rs11544800	A	G	5053.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:32,214:0.87:246
chr17	71192955	rs1010442	C	T	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:17,86:0.83:103
chr17	71193594	rs7221701	G	A	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:32,107:0.77:139
chr17	71193633	rs11658510	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.278;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr17	71195949	rs1009110	C	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:14,51:0.78:65
chr17	71196809	rs1026128	A	G	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:14,104:0.88:118
chr17	71196817	rs202127829	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-1.251;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:106,16:0.13:122
chr17	71196995	rs1026129	G	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr17	71197200	rs1026130	T	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	71197748	rs1037256	G	A	7056.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:61,297:0.83:358
chr17	71201675	rs3829571	T	C	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	71202777	.	CTT	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.806;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr17	71203231	rs57965299	CAAAAA	C	1450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.000;QD=32.97;ReadPosRankSum=1.611;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:3,41:0.93:44
chr17	71205854	rs8387	A	G	6216.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:39,260:0.87:299
chr17	71208647	rs10717516	GC	G	2090.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:12,63:0.84:75
chr17	71223424	rs71154980	GA	G	493.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;MQRankSum=0.733;QD=15.43;ReadPosRankSum=-1.003;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr17	71223501	rs17184168	T	C	296.84	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr17	71231604	rs3751925	A	C	5327.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:44,212:0.83:256
chr17	71232687	rs745143	T	C	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:29,165:0.85:194
chr17	71232804	rs904384	C	A	14311.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	71232804	.	CATT	AATC,AATT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=160,188;NR=101,121;PP=2944,308;QD=20;SC=CCAGAATCATCATTGTGTCCC;SbPval=0.57;Source=Platypus;TC=313;TCF=190;TCR=123;TR=261,309;WE=71232815;WS=71232794;set=Platypus	GT:AF:DP	0/1:0.83:313
chr17	71232807	rs904383	T	C	7141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.94;ReadPosRankSum=0.033;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:48,293:0.86:341
chr17	71232881	rs745142	G	C	9949.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:74,413:0.85:487
chr17	71233130	rs11869253	A	G	5873.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:75,258:0.77:333
chr17	71238433	rs1566286	G	A	5243.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:48,226:0.82:274
chr17	71238525	rs1566287	A	G	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:37,145:0.80:182
chr17	71238649	rs5821951	T	TC	842.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr17	71238693	rs1566288	T	C	373.79	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr17	71239000	rs2270726	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr17	71239016	rs2270727	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr17	71239190	rs2270728	A	T	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.17;ReadPosRankSum=1.453;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:9,36:0.80:45
chr17	71239214	rs138600770	GAA	G	1160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.24;ReadPosRankSum=1.324;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr17	71239227	.	T	TG	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-0.065;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr17	71239234	.	T	TTTTG	759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.000;QD=30.39;ReadPosRankSum=-0.936;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,23:0.92:25
chr17	71244630	rs8915	C	T	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:32,160:0.83:192
chr17	71246230	rs112790822	C	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.722;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr17	71257804	rs72849296	A	C	999.98	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:4,38:0.90:42
chr17	71334473	rs3195414	G	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-1.141;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:377,73:0.16:450
chr17	71335197	rs145389098	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.092;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr17	71344584	rs4969105	G	A	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	71344668	rs75637704	C	T	8871.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:99,394:0.80:493
chr17	71344889	rs9905883	C	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	71346347	.	G	GC	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=7.472;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=6.387;QD=0.56;ReadPosRankSum=-1.318;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:68,7:0.09:75
chr17	71346353	rs28397959	A	C	2899.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	71346750	rs1995163	C	G	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	71346943	rs4969107	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	71358045	rs11657033	T	C	1462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=5.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-0.891;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:16,75:0.82:91
chr17	71365314	rs867998	A	G	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:19,71:0.79:90
chr17	71375794	rs62072075	C	T	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	71376869	rs12941386	C	T	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	71382747	rs7212508	T	C	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	71390366	rs904381	C	A	10137.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr17	71397375	rs7226251	T	G	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	71398046	.	C	CG	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.646;QD=16.42;ReadPosRankSum=0.053;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr17	71398170	rs9302962	G	C	6696.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	71415245	rs8071352	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.120;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:88,20:0.19:108
chr17	71429674	rs11652365	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr17	72209858	rs7206926	A	G	9314.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:72,401:0.85:473
chr17	72245986	rs36208397	CCACTGTGGGGCTCCTGGGAGACGGAGCCT	C	4844.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	72277879	rs3803792	A	G	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:15,93:0.86:108
chr17	72281367	rs6501706	A	G	7439.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	72285659	rs35604335	CA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.733;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=10.041;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.688;QD=1.52;ReadPosRankSum=-2.182;SOR=2.331;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr17	72297104	rs34880269	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.608;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr17	72297180	rs8076337	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.419;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr17	72301432	rs8073660	A	G	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=898;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.853;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:752,145:0.16:897
chr17	72303449	rs11867486	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.080;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:109,26:0.19:135
chr17	72305534	rs2290955	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=2.044;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:323,59:0.15:382
chr17	72305688	rs2290956	T	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.717;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:128,36:0.22:164
chr17	72305753	rs2290957	C	T	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	72305793	rs12051676	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr17	72306116	rs66769719	CCT	C	8863.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	72308319	rs1979370	G	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	72308403	rs4239008	G	A	238.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	72308410	rs4239009	C	T	179.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	72308447	rs1979371	G	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	72310476	rs2054400	G	A	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	72321928	rs7207519	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	72322881	rs8082699	G	A	10658.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr17	72324649	rs11412158	G	GC	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.299;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:113,23:0.17:136
chr17	72332849	rs1111596	A	G	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	72337088	rs113482479	T	TG	3621.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:33,134:0.80:167
chr17	72338164	rs11285065	TC	T	5075.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	72344723	rs75219617	TGTAA	T	899.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=4.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.551;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:191,36:0.16:227
chr17	72346736	rs12451539	C	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.294;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:335,56:0.14:391
chr17	72346855	rs11077744	T	C	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.024;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:340,64:0.16:404
chr17	72348741	rs11655890	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.603;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:91,14:0.13:105
chr17	72348810	rs1814832	A	C	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	72349040	rs9897137	C	T	9875.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:99,428:0.81:527
chr17	72349067	rs2280108	C	T	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.534;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:323,75:0.19:398
chr17	72350362	rs72852235	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.951;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:185,36:0.16:221
chr17	72350402	rs2271534	G	A	5663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.13;ReadPosRankSum=0.813;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:51,245:0.83:296
chr17	72351024	rs9891620	T	C	8258.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:88,365:0.81:453
chr17	72351088	rs9891819	T	C	6868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=0.328;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:92,315:0.77:407
chr17	72351406	rs2271536	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.407;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:260,42:0.14:302
chr17	72352384	rs77503402	G	A	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:27,166:0.86:193
chr17	72352457	rs77811367	G	A	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:18,104:0.85:122
chr17	72353745	rs11547807	G	T	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:40,154:0.79:194
chr17	72357585	rs6501712	A	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr17	72357615	rs28430711	C	T	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:12,66:0.85:78
chr17	72358645	rs145690403	G	A	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:16,67:0.81:83
chr17	72366695	rs2382647	C	A	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	72367843	rs11652774	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.166;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:124,30:0.19:154
chr17	72368550	rs11658891	T	C	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=1.027;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:386,91:0.19:477
chr17	72369704	rs12451435	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr17	72439700	rs9893663	T	G	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	72439808	rs3840056	TG	T	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-0.936;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:179,19:0.10:198
chr17	72443192	rs2706527	G	T	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	72469958	rs1127737	A	G	13003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-4.853;QD=34.31;ReadPosRankSum=0.563;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:58,321:0.85:379
chr17	72469966	rs2272111	G	A	12979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-4.828;QD=34.34;ReadPosRankSum=0.682;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:60,318:0.84:378
chr17	72473553	rs7209406	T	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,55:0.74:74
chr17	72477385	rs1879967	A	G	4083.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:33,185:0.85:218
chr17	72478030	rs55682471	CT	C	1202.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr17	72519798	rs1472726	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=2.811;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr17	72521760	rs372366394	GTC	G	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.268;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:62,10:0.14:72
chr17	72521897	rs17553512	G	A	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.496;QD=2.07;ReadPosRankSum=-1.671;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:276,66:0.19:342
chr17	72527718	rs965229	A	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.433;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr17	72588326	rs493430	A	C	6873.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:63,270:0.81:333
chr17	72608834	rs579238	G	A	6039.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:52,256:0.83:308
chr17	72608926	rs509574	G	A	6490.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:59,274:0.82:333
chr17	72610089	rs1878061	C	T	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	72691928	rs2034310	T	C	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:23,124:0.84:147
chr17	72699384	rs749780	C	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	72700943	rs35489971	A	G	19287.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr17	72725478	rs142549913	C	G	5968.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:40,245:0.86:285
chr17	72736755	rs11651291	A	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	72744798	rs745666	G	C	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	72762901	rs4788849	A	T	2181.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	72768230	.	C	T	3409.77	.	AC=1;AF=0.500;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	0/1:33,139:0.81:172
chr17	72768970	rs2305214	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	72769694	rs878907	A	G	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	72771637	rs750018	C	T	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	72773387	rs8074137	G	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	72773794	rs9910691	C	A	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	72781812	rs2166703	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	72784932	rs2016126	G	A	16016.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:1,614:1.00:615
chr17	72786912	rs4494584	A	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-2.019;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr17	72791088	rs3830567	A	AG	2044.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=1.431;QD=15.26;ReadPosRankSum=-0.166;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:18,116:0.87:134
chr17	72791266	rs9910463	G	A	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:14,109:0.89:123
chr17	72791618	rs7221435	A	G	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	72832928	rs11558036	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=6.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.126;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:96,20:0.17:116
chr17	72838481	rs939536	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	72838649	rs3744215	C	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.585;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:645,99:0.13:744
chr17	72839130	rs139495021	A	AGCTCCGGGG	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	72843378	rs3826314	C	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-1.871;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr17	72843411	rs3833106	GC	G	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.171;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr17	72843923	rs3744192	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.047;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr17	72844165	rs3744193	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.062;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:101,17:0.14:118
chr17	72847548	rs3744194	G	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=1.547;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr17	72848758	rs75018418	C	CG	9735.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	72848772	rs199662980	G	GC	8734.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	72848778	rs201209302	C	CG	7910.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	72848800	rs117147802	C	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.261;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:93,16:0.15:109
chr17	72848828	rs116833065	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.443;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:57,8:0.12:65
chr17	72851133	rs689730	A	G	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	72859078	rs690371	A	G	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DB;DP=904;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.995;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:774,121:0.14:895
chr17	72860253	rs552432	A	G	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.771;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:238,53:0.18:291
chr17	72861991	rs2070919	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=5.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.011;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:138,21:0.13:159
chr17	72862155	rs516035	T	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.946;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=16.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-1.622;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr17	72862593	rs690514	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.427;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:207,44:0.18:251
chr17	72862705	rs2070918	G	A	6453.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:68,282:0.81:350
chr17	72862809	rs509911	T	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.261;SOR=1.263;set=HC	GT:AD:AF:DP	0/1:97,30:0.24:127
chr17	72864768	rs560323	A	G	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.603;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:144,32:0.18:176
chr17	72869078	rs492095	A	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.692;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=6.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-2.480;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:233,40:0.15:273
chr17	72888836	rs489152	G	A	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	72889676	.	G	GGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATC	12147.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DP=296;ExcessHet=3.0103;FS=3.060;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=-0.044;QD=45.84;ReadPosRankSum=0.408;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:1,264:1.00:265
chr17	72889685	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=20;MQ=55.81;NF=43;NR=55;PP=2962;QD=20;SC=TGGGCTCCGTGGGTTCCATGG;SbPval=0.46;Source=Platypus;TC=196;TCF=83;TCR=113;TR=98;WE=72889693;WS=72889666;set=Platypus	GT:AD:AF:DP	0/1:98,98:0.50:196
chr17	72926288	rs368677700	CA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.043;QD=0.56;ReadPosRankSum=1.790;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:108,23:0.18:131
chr17	72937605	rs7210616	G	A	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	72937851	rs9890664	G	A	10031.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	72938100	rs1542752	T	C	9384.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr17	72939446	rs4789110	C	T	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.777;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:482,99:0.17:581
chr17	72939663	rs8069015	G	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.770;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr17	72939854	.	AAC	A	769	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.593;QD=19.22;ReadPosRankSum=1.654;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:7,33:0.82:40
chr17	72943063	.	C	T	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.372;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:303,55:0.15:358
chr17	72943126	rs8066909	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.965;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:333,59:0.15:392
chr17	72943434	rs35702634	G	A	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.572;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:395,78:0.16:473
chr17	72948369	rs17853024	A	G	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	72951823	rs9899490	C	T	6308.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	72951845	rs9903414	G	A	7513.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	72952017	rs9906160	A	G	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	72955227	rs902727	C	G	505.28	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr17	72956124	rs3744198	G	A	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.511;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:398,86:0.18:484
chr17	72957962	rs10719287	CT	C	3316.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:14,99:0.88:113
chr17	72959000	rs7503218	G	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=1.864;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:77,13:0.14:90
chr17	72983888	rs7222918	A	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	72997364	rs58998428	T	TAGG	4685.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:33,114:0.78:147
chr17	72999773	rs3744204	C	T	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:29,169:0.85:198
chr17	73000061	rs3744203	A	G	7174.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:53,302:0.85:355
chr17	73015707	rs12449492	C	A	295.56	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr17	73016621	rs1044228	C	T	5030.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:43,209:0.83:252
chr17	73043337	rs12952376	C	T	194.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.71;ReadPosRankSum=-0.447;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr17	73089852	rs4788863	T	C	11324.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:123,485:0.80:608
chr17	73094072	rs10598249	TCTC	T	1436.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr17	73096951	rs4238978	A	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	73110144	rs1531565	G	T	1193.96	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:5,49:0.91:54
chr17	73110279	rs1531564	C	T	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:23,148:0.87:171
chr17	73124692	rs2291028	C	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	73125173	rs2291027	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	73126746	rs10715821	GT	G	13174.73	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	73127024	rs9910084	C	G	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	73127683	rs4788867	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	73138722	.	G	GAGGGA	143	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	73138980	rs151283915	TAC	T	595.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	73143574	rs1382508	T	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	73177444	rs1471453	C	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	73204530	rs899326	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.14;QD=31.42;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	73204535	rs10579016	CAA	C	288.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.645;QD=15.18;ReadPosRankSum=0.200;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr17	73208182	rs12946479	C	T	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr17	73208205	rs56406015	G	GTT,GTGTT	7404.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=190;set=Intersection	GT:AF:DP	1/2:0.19,0.81:174
chr17	73211642	rs9909306	A	G	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	73221439	rs2291029	C	T	6417.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	73222847	rs1551967	C	T	10588.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	73222865	rs1478785	G	A	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	73228101	rs899318	T	C	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	73230856	rs9988	C	T	10505.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr17	73231817	rs3841603	AT	A	2940.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	73236605	rs11077781	C	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	73240559	rs2306216	A	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	73240836	rs4789156	T	C	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	73242895	rs2242230	A	G	8301.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	73242935	rs2242231	A	G	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	73257830	rs2279161	C	T	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	73257986	rs8075276	C	T	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	73258085	rs36039201	GGC	G	3785.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	73258479	rs6501772	C	T	10719.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	73259083	rs2279162	C	T	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	73265629	.	CTTTTTTT	C	354.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.47;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	73268801	rs3744231	C	T	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	73269530	rs1809352	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	73269676	rs4789164	C	T	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	73279624	rs7213318	A	G	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	73279700	rs4788882	C	T	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	73282299	rs2306218	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	73282636	rs2306219	C	T	5951.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	73316679	rs8079197	G	C	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	73317644	rs12946365	C	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	73328773	rs1529844	T	C	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	73389446	rs4788890	A	G	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	73402246	rs7220246	C	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	73482110	rs11331365	TC	T	2653.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	73482664	rs9899149	T	C	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	73484753	rs11652993	C	G	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	73485033	rs11867527	T	C	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	73485781	rs8079362	C	T	20771.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:0,782:1.00:782
chr17	73488794	rs4078259	C	T	17866.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,650:1.00:650
chr17	73489220	rs7215753	T	C	9587.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr17	73489567	rs4078474	C	G	14010.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr17	73490611	rs8078131	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	73491894	rs11077792	G	A	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	73493874	rs12949173	G	C	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:38,140:0.79:178
chr17	73494963	rs9894026	G	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	73497415	rs8081353	T	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=1.837;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	73497415	.	TTT	CTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=2;HapScore=1;MGOF=22;MMLQ=28;MQ=59.96;NF=78;NR=31;PP=2947;QD=20;SC=ATCTAGGTGATTTCAACACCT;SbPval=0.66;Source=Platypus;TC=116;TCF=80;TCR=36;TR=109;WE=73497425;WS=73497405;set=Platypus	GT:AD:AF:DP	1/1:7,109:0.94:116
chr17	73497417	rs8081354	T	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=1.896;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	73497439	rs8075850	G	A	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	73497794	rs9892311	T	C	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	73498483	rs7503373	T	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	73498623	rs7502835	A	G	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	73499697	rs7207376	T	C	9089.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	73500213	.	T	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.004;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=25.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=2.101;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr17	73501752	rs8069700	G	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	73502118	rs28558885	G	A	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	73504416	rs6501815	T	C	7277.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	73510012	rs4789206	A	T	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	73512653	rs7216673	G	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	73513185	rs7218675	C	A	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	73515055	.	A	AT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-0.725;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:137,25:0.15:162
chr17	73517536	rs79508780	G	A	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.061;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:268,51:0.16:319
chr17	73518203	rs9911502	G	C	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	73518284	rs6501820	G	C	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	73519413	rs8064529	C	T	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr17	73539631	rs6501822	A	G	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	73552062	rs2305528	G	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.849;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:80,22:0.22:102
chr17	73552185	rs1671036	G	A	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.311;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:243,52:0.18:295
chr17	73554523	rs1671033	C	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	73554756	rs66614718	C	T	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:11,48:0.81:59
chr17	73559342	rs936060	G	A	5693.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:44,218:0.83:262
chr17	73559563	rs1671028	G	A	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:23,130:0.85:153
chr17	73559629	rs1671027	A	G	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:8,59:0.88:67
chr17	73564962	rs34001927	A	G	6472.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:59,253:0.81:312
chr17	73565171	rs1671021	T	C	8585.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:71,360:0.84:431
chr17	73565262	rs2305526	T	A	7634.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	73565510	rs936059	T	G	1049.79	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr17	73566561	rs2305525	G	A	4243.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:36,168:0.82:204
chr17	73567846	rs1661715	C	T	4718.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:48,190:0.80:238
chr17	73568055	rs1661714	C	T	9675.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:77,416:0.84:493
chr17	73568984	rs1671020	G	A	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:19,87:0.82:106
chr17	73569010	rs1661713	T	C	3030.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:29,126:0.81:155
chr17	73569776	rs10648915	C	CCT	3013.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:10,74:0.88:84
chr17	73569927	rs1671019	G	T	3724.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:39,147:0.79:186
chr17	73570718	rs1126939	C	G	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:25,160:0.86:185
chr17	73570756	rs1661712	G	T	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:22,145:0.87:167
chr17	73570774	rs1671016	G	A	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:19,135:0.88:154
chr17	73570842	rs35199943	T	C	5421.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:53,228:0.81:281
chr17	73571030	rs1042861	A	G	5400.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:51,227:0.82:278
chr17	73587640	rs707709	T	C	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	73587910	rs12449676	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=15.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.289;SOR=2.011;set=HC	GT:AD:AF:DP	0/1:54,9:0.14:63
chr17	73588067	rs736523	A	G	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:36,131:0.78:167
chr17	73588199	rs736525	T	C	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:21,82:0.80:103
chr17	73590830	rs820256	T	G	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	73590888	rs76361517	T	G	6397.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:46,276:0.86:322
chr17	73592352	rs7359522	G	A	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr17	73592568	rs145254299	CTG	C	10111.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:38,245:0.87:283
chr17	73592733	rs75861410	C	G	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:21,84:0.80:105
chr17	73598904	rs62089251	C	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr17	73601517	rs11448916	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.050;QD=8.06;ReadPosRankSum=0.950;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr17	73601755	rs936054	G	A	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	73602081	rs8068464	G	A	2644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=-0.248;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:23,121:0.84:144
chr17	73606310	rs11657863	G	A	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:21,91:0.81:112
chr17	73608203	rs820140	T	C	4023.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:26,158:0.86:184
chr17	73608744	rs11336364	CA	C	824.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.505;MLEAC=2;MLEAF=1.000;MQ=60.78;MQRankSum=1.039;QD=12.89;ReadPosRankSum=1.702;SOR=0.469;set=HC	GT:AD:AF:DP	1/1:9,55:0.86:64
chr17	73609112	rs820142	G	A	5320.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:30,214:0.88:244
chr17	73610203	rs4789221	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=13.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=1.328;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr17	73611467	rs3803729	A	G	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr17	73611724	rs35131709	G	GTC	5649.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:28,144:0.84:172
chr17	73611823	rs820144	T	C	4493.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:33,195:0.86:228
chr17	73612642	rs11439064	A	AT	18863.73	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr17	73613975	rs820145	G	A	6102.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:67,254:0.79:321
chr17	73614357	rs1093992	G	A	4387.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:33,182:0.85:215
chr17	73615644	rs820147	C	T	1386.41	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:5,52:0.91:57
chr17	73615887	rs820148	A	G	7712.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:54,317:0.85:371
chr17	73615933	rs820149	T	C	6191.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:40,248:0.86:288
chr17	73615962	rs820150	T	C	7905.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:38,217:0.85:255
chr17	73615983	rs820151	G	A	7461.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:38,192:0.83:230
chr17	73616088	rs820152	T	C	5722.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:42,249:0.86:291
chr17	73616211	rs3840857	TG	T	3526.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:26,107:0.80:133
chr17	73616239	rs820153	C	G	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:27,93:0.78:120
chr17	73616446	rs820154	A	T	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:35,170:0.83:205
chr17	73616853	rs10808	G	C	11869.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:60,298:0.83:358
chr17	73616864	rs11470	C	A	11896.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:59,294:0.83:353
chr17	73616920	rs10814	A	G	7707.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:64,321:0.83:385
chr17	73617104	rs820182	A	C	9441.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:63,366:0.85:429
chr17	73617377	rs820183	A	G	5335.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:54,196:0.78:250
chr17	73617403	rs820184	T	C	3697.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:45,152:0.77:197
chr17	73619920	rs820186	G	A	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:50,231:0.82:281
chr17	73619952	.	GCTTCT	G	12054.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	73619953	.	CT	GG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=59.91;NF=147;NR=85;PP=2947;QD=20;SC=GGACCGGTGGCTTCTGGGGGT;SbPval=0.64;Source=Platypus;TC=266;TCF=162;TCR=104;TR=232;WE=73619965;WS=73619942;set=Platypus	GT:AD:AF:DP	1/1:34,232:0.87:266
chr17	73619955	.	TCTG	T	2948	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=28;MQ=59.97;NF=70;NR=85;PP=2948;QD=20;SC=ACCGGTGGCTTCTGGGGGTGG;SbPval=0.48;Source=Platypus;TC=161;TCF=71;TCR=90;TR=155;WE=73619965;WS=73619942;set=Platypus	GT:AD:AF:DP	1/1:6,155:0.96:161
chr17	73619958	.	G	GGT	12053.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=1.084;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	73620804	rs820187	C	A	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr17	73621432	rs820188	A	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	73622134	.	A	AGAG	17669.73	.	AC=1;AF=0.500;AN=2;DP=588;set=Intersection	GT:AD:AF:DP	0/1:102,431:0.81:533
chr17	73625286	rs820190	G	A	4510.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:45,209:0.82:254
chr17	73625430	rs4788902	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.359;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:162,35:0.18:197
chr17	73625478	rs820191	T	C	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	73625629	rs820192	A	C	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	73626208	rs820193	G	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	73626817	rs820194	G	A	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:25,112:0.82:137
chr17	73626829	rs820195	C	G	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	73626921	.	T	TG	32.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.605;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.565;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr17	73626922	rs56158987	G	GT	283.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=1.716;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr17	73626923	rs55982817	G	GT	283.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=1.885;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr17	73626983	rs9896073	G	C	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.344;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:188,49:0.21:237
chr17	73627539	rs820196	T	C	4549.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:45,191:0.81:236
chr17	73627565	rs820197	A	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	73647138	rs1661744	CA	TG	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr17	73658489	rs820159	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	73661411	rs820157	A	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,41:0.85:48
chr17	73663296	rs2165635	CT	AG	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr17	73663313	rs864234	C	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr17	73663372	rs820156	A	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr17	73687495	rs820218	G	A	4300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.121;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=-0.782;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:50,199:0.80:249
chr17	73698557	rs820232	C	T	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	73702253	rs2305529	G	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.188;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:125,26:0.17:151
chr17	73702317	rs820230	A	G	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	73702402	rs820229	T	C	7039.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	73720638	rs820166	C	T	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	73720900	rs820167	A	G	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	73723239	rs2584100	G	A	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.109;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.695;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:373,71:0.16:444
chr17	73723453	rs34275940	GC	G	5469.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	73725239	rs71271523	CA	C	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.697;QD=7.65;ReadPosRankSum=-0.926;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:19,41:0.68:60
chr17	73725298	rs1661674	C	T	9284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.599;QD=36.27;ReadPosRankSum=-1.089;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:38,218:0.85:256
chr17	73725301	rs34598265	C	T	9523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.611;QD=35.67;ReadPosRankSum=-0.625;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:41,226:0.85:267
chr17	73725304	rs1661675	C	G	9572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.604;QD=34.31;ReadPosRankSum=-0.795;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:42,237:0.85:279
chr17	73726685	rs1093996	T	C	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=16.91;ReadPosRankSum=2.033;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr17	73732025	rs820174	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.000;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:130,19:0.13:149
chr17	73732045	rs820175	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.682;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.164;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:154,27:0.15:181
chr17	73732810	rs820177	A	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.114;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:98,21:0.18:119
chr17	73735614	rs117608736	G	A	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:6,77:0.93:83
chr17	73746146	rs820387	T	C	8735.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr17	73747128	rs61735289	G	A	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.871;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:491,95:0.16:586
chr17	73748452	rs2603499	G	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.538;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.898;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:140,25:0.15:165
chr17	73751038	rs201686139	C	CAT	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.62;MQRankSum=7.279;QD=1.71;ReadPosRankSum=-0.241;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:202,39:0.16:241
chr17	73751042	rs3988219	C	CAT,CACAT	9425.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=230;set=Intersection	GT:AF:DP	1/2:0.15,0.85:227
chr17	73751081	rs55868003	A	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=4.476;MLEAC=1;MLEAF=0.500;MQ=61.03;MQRankSum=8.125;QD=0.66;ReadPosRankSum=-0.741;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:164,23:0.12:187
chr17	73752999	rs2249613	C	G	5328.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:31,204:0.87:235
chr17	73753503	rs871443	T	C	7512.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:72,317:0.81:389
chr17	73753661	rs9367	C	T	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr17	73759038	rs35008831	TC	T	6996.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	73759304	rs820386	G	T	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:26,93:0.78:119
chr17	73759552	rs7209235	G	A	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:25,85:0.77:110
chr17	73774877	rs9895763	G	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-1.026;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:270,40:0.13:310
chr17	73780506	rs11655389	G	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr17	73781075	rs11335367	GC	G	109.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.13;ReadPosRankSum=2.200;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	73812909	rs9908146	A	G	7018.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	73813181	.	CAGAGCCTGTGCTGATGAGCCTGTAGGACTGG	C	2963	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=27;MQ=60.74;NF=2;NR=14;PP=2963;QD=20;SC=GGGCAGTCCCCAGAGCCTGTG;SbPval=0.41;Source=Platypus;TC=23;TCF=2;TCR=21;TR=16;WE=73813219;WS=73813171;set=Platypus	GT:AD:AF:DP	0/1:7,16:0.70:23
chr17	73816026	rs11868471	A	G	14715.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr17	73823720	rs9916685	G	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.184;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:83,21:0.20:104
chr17	73826120	rs35628234	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.336;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:226,43:0.16:269
chr17	73826611	rs2290768	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=2.190;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:110,17:0.13:127
chr17	73827436	rs3217698	C	CG	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=2.420;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:118,15:0.11:133
chr17	73830270	rs7212635	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-1.250;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:154,33:0.18:187
chr17	73831658	rs3744024	A	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=1.767;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:131,29:0.18:160
chr17	73831900	rs3744026	T	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.809;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:464,81:0.15:545
chr17	73833065	rs187179863	C	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.829;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:42,9:0.18:51
chr17	73833087	rs142821095	C	CCCTCCTCCAGGGCCCCTGGTGGAGAA	182.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:41,7:0.15:48
chr17	73836162	rs7223416	C	G	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.945;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:132,37:0.22:169
chr17	73836441	rs7226310	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.122;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.297;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr17	73837142	rs8067076	A	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.048;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:161,29:0.15:190
chr17	73838816	rs3744006	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.122;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:91,18:0.17:109
chr17	73839498	rs9903200	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-3.071;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr17	73842892	rs2305914	C	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.450;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:157,39:0.20:196
chr17	73843767	rs77051585	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.148;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr17	73844748	rs2290771	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-1.875;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:95,17:0.15:112
chr17	73847613	rs936393	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.564;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr17	73847799	rs936391	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.758;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:133,29:0.18:162
chr17	73871467	rs3744017	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.055;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:148,30:0.17:178
chr17	73871911	rs3744021	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.399;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr17	73872948	rs1055129	A	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=0.510;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr17	73874656	rs56082951	C	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.171;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr17	73886888	rs3760128	A	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.758;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:103,22:0.18:125
chr17	73887807	rs11270925	TGCACACACACACGTGCTCACA	T	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=2.350;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:57,9:0.14:66
chr17	73888354	rs34974290	G	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.901;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:385,85:0.18:470
chr17	73888423	rs7222755	A	G	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=1.969;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:356,71:0.17:427
chr17	73888427	rs7222757	A	C	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=1.863;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:359,72:0.17:431
chr17	73888743	rs3744027	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.525;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr17	73897033	rs111405920	A	AC	3180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.270;QD=3.94;ReadPosRankSum=1.656;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:681,127:0.16:808
chr17	73897046	rs9902371	A	G	3239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=840;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=2.598;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:703,133:0.16:836
chr17	73900688	rs3744015	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.107;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:152,29:0.16:181
chr17	73900851	.	GC	G	851.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=19.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.29;ReadPosRankSum=2.429;SOR=5.021;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr17	73900863	.	C	G	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=14.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=3.030;SOR=3.217;set=HC	GT:AD:AF:DP	0/1:26,32:0.55:58
chr17	73908475	.	C	G	28	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=5;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=1;NR=3;PP=28;QD=15.6928031368;SC=GCTGCTCCCCCCGCCAGTGGG;SbPval=0.76;Source=Platypus;TC=23;TCF=7;TCR=16;TR=4;WE=73908483;WS=73908465;set=Platypus	GT:AD:AF:DP	0/1:19,4:0.17:23
chr17	73913729	rs4788912	C	G	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	73913965	rs11288315	TC	T	2307.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	73916087	rs201971333	C	G	4378.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:29,168:0.85:197
chr17	73916423	rs7213548	A	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.287;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:74,16:0.18:90
chr17	73917426	rs3744014	A	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.954;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.253;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:188,33:0.15:221
chr17	73919521	rs7219918	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.523;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:146,34:0.19:180
chr17	73919538	rs7218738	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.209;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:164,32:0.16:196
chr17	73922941	rs2305913	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=1.109;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:118,26:0.18:144
chr17	73926231	rs72865811	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.506;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr17	73927400	rs76534600	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr17	73942976	rs2666003	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.021;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr17	73944569	rs12051891	A	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=6.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=2.416;SOR=0.253;set=HC	GT:AD:AF:DP	0/1:95,26:0.21:121
chr17	73945308	.	TC	T	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=5.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-2.017;SOR=1.212;set=HC	GT:AD:AF:DP	0/1:146,30:0.17:176
chr17	73949540	rs1135640	G	C	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:20,97:0.83:117
chr17	73951864	rs10852766	T	C	8573.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:80,368:0.82:448
chr17	73953404	rs11077798	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	73982127	rs8073730	T	A	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr17	73987493	rs118104688	G	A	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:14,59:0.81:73
chr17	73997474	rs2069528	G	A	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	74007574	rs2290252	A	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.078;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr17	74007846	rs2290251	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.624;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:100,24:0.19:124
chr17	74011452	rs2071195	G	A	8072.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:60,341:0.85:401
chr17	74011721	rs2665970	C	A	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:29,154:0.84:183
chr17	74014468	rs2071194	C	A	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	74014628	rs2071193	G	A	4709.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:38,207:0.84:245
chr17	74014668	rs2071192	T	C	5446.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	74015158	rs2290249	C	A	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,76:0.84:90
chr17	74015590	rs2244371	C	T	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.33;SOR=1.641;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	74015595	rs2244370	T	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=1.581;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	74015819	rs79643517	A	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=5.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.16;ReadPosRankSum=-0.946;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:187,24:0.11:211
chr17	74017554	rs74955334	G	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-7.650;QD=2.51;ReadPosRankSum=0.643;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:84,14:0.14:98
chr17	74017573	rs78569674	C	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-8.666;QD=1.26;ReadPosRankSum=-0.429;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:97,11:0.10:108
chr17	74017677	rs200115767	G	GCC	1727.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	74017700	rs71161251	T	TC	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	74018655	rs2598417	C	T	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	74019572	rs2257388	T	C	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	74023107	rs2665961	A	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	74036468	rs2305346	C	T	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	74066303	.	C	CA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.154;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr17	74076127	rs34700740	TC	T	2577.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	74076415	rs2257020	G	A	17905.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr17	74076642	rs2257028	G	A	18515.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr17	74077497	rs8836	G	C	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	74079838	rs2665986	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	74081345	rs2246277	C	T	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	74081618	rs2598450	C	T	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	74083905	rs2243481	C	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	74084029	rs2243486	C	T	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	74084428	rs2305348	C	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	74084441	rs2246621	C	T	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	74084449	rs2246623	C	T	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	74084737	rs2246632	T	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	74085012	rs2084666	G	A	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	74086633	rs2598451	C	G	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	74090700	rs2250081	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	74094105	rs7208391	C	G	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	74158736	rs62090128	G	A	5150.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:38,219:0.85:257
chr17	74169682	rs11655525	C	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	74208424	rs9911122	G	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.222;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:251,54:0.18:305
chr17	74208622	rs35372072	T	TA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.567;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr17	74261677	rs2585751	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.667;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr17	74261929	rs71382201	A	G	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-2.010;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:170,37:0.18:207
chr17	74286032	.	C	CA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.031;QD=0.44;ReadPosRankSum=-1.567;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:122,24:0.16:146
chr17	74324716	rs117578720	A	C	2682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.77;ReadPosRankSum=0.531;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:10,65:0.87:75
chr17	74324729	rs346791	C	A	3033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.93;ReadPosRankSum=-1.345;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:11,84:0.88:95
chr17	74326553	rs449114	G	A	3288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.75;ReadPosRankSum=0.901;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:12,80:0.87:92
chr17	74326556	rs399029	A	T	3288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.99;ReadPosRankSum=0.936;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:14,80:0.85:94
chr17	74381555	rs2247856	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	74381567	rs346803	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	74387284	rs3803739	C	T	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr17	74398514	rs11652985	G	C	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	74401405	rs11290311	AG	A	6742.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	74468552	rs12942767	A	G	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	74471298	rs12951122	G	A	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:32,105:0.77:137
chr17	74473593	rs3833088	A	AG	4388.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:23,130:0.85:153
chr17	74475024	rs3744045	G	A	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	74475975	rs3809694	C	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.241;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr17	74476045	rs3826287	G	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.313;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:67,14:0.17:81
chr17	74477340	rs3826288	A	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	74477691	rs11870168	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr17	74524651	rs4238995	TT	GG	2181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=21.185;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.62;ReadPosRankSum=-0.491;SOR=2.634;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chr17	74536332	rs8176326	TC	T	89.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.048;SOR=0.026;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr17	74536333	rs77817682	C	G	690.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=-0.048;SOR=3.664;set=HC	GT:AD:AF:DP	0/1:12,36:0.75:48
chr17	74539092	rs4318240	C	T	10107.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr17	74541129	rs4232870	A	G	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=27.01;SOR=2.085;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	74555336	rs148733104	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-2.555;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:62,13:0.17:75
chr17	74557681	rs4510053	A	C	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	74557803	rs60161580	GT	G	6082.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:7,280:0.98:287
chr17	74570408	rs7207173	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.859;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=5.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.996;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:159,25:0.14:184
chr17	74581914	rs3135934	C	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=4.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.028;SOR=1.348;set=HC	GT:AD:AF:DP	0/1:110,20:0.15:130
chr17	74581945	rs12449329	AA	GC	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.029;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.314;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr17	74582025	rs1867561	G	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.194;SOR=0.170;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr17	74621635	rs2286595	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr17	74625865	rs11433733	G	GT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=8.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.616;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr17	74639530	rs719430	T	C	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:15,101:0.87:116
chr17	74681109	rs145795573	TC	T	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.895;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:112,24:0.18:136
chr17	74681435	rs2286593	A	G	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr17	74684598	rs4788942	C	T	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:44,220:0.83:264
chr17	74684858	rs7219390	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr17	74707050	rs71383084	G	C	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	74707086	rs372946783	CGTCGCCGCGCCCG	C	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	74715030	.	C	G	1887.77	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:20,76:0.79:96
chr17	74716759	rs12943725	A	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	74721488	.	C	CAA	70.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.08;ReadPosRankSum=-0.924;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr17	74721967	rs376352692	TA	T	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.087;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr17	74728938	rs4789351	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	74732507	rs237058	A	G	16471.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr17	74733099	rs237057	G	A	7900.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	74733403	rs3744061	G	A	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	74734323	rs237054	G	A	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	74734598	rs237053	C	T	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	74736999	.	CT	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.434;QD=2.20;ReadPosRankSum=0.452;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:91,41:0.31:132
chr17	74750215	rs11399997	C	CT	7191.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr17	74750331	rs116719	C	T	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	74857515	rs499828	A	C	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	74920957	rs3889146	G	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	74922636	rs12450749	G	A	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	74922652	rs11653088	C	T	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	74928931	rs8078608	C	T	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	74929442	rs12600695	A	G	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr17	74936576	rs8081793	G	A	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=957;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.321;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:775,177:0.19:952
chr17	74942478	rs8067984	C	T	13546.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr17	74944294	.	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=3.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.739;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:91,20:0.18:111
chr17	74944709	rs9894270	T	C	10748.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	75085226	rs3214724	TC	T	2101.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	75085260	rs2247814	C	G	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	75085434	rs2678770	G	A	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	75187043	rs57813047	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.923;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:61,10:0.14:71
chr17	75187413	rs73998646	G	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.542;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:416,64:0.13:480
chr17	75190846	rs673918	A	C	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	75196835	rs117048292	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr17	75199580	rs12602668	A	G	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:25,141:0.85:166
chr17	75202584	rs78693553	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-1.096;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr17	75202977	rs77192465	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.554;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr17	75207966	rs2280269	A	G	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	75209657	rs117041416	A	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.522;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:136,23:0.14:159
chr17	75209945	rs77792614	G	A	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.366;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:161,50:0.24:211
chr17	75210054	rs75076568	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-2.328;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:91,19:0.17:110
chr17	75303298	rs4789439	T	C	3454.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:31,137:0.82:168
chr17	75316497	rs3760143	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-1.656;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:120,24:0.17:144
chr17	75369578	rs7217986	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.437;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr17	75401190	rs2164449	G	A	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	75401310	rs2117924	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	75478481	rs425139	C	T	8629.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:82,367:0.82:449
chr17	75478809	rs149896636	C	CACCGCAGCCT	1699.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:5,40:0.89:45
chr17	75483719	rs9902607	A	G	131.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.65;ReadPosRankSum=-2.200;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	75484156	rs441670	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr17	75484200	rs35261301	TC	T	2027.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:20,74:0.79:94
chr17	75484700	rs378578	A	G	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:14,95:0.87:109
chr17	75484781	rs370531	T	C	7157.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:48,309:0.87:357
chr17	75485014	rs426885	A	C	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:18,70:0.80:88
chr17	75488973	rs2627198	C	T	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:29,118:0.80:147
chr17	75489015	rs188747	T	C	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:40,168:0.81:208
chr17	75489216	rs312797	C	T	2558.53	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:10,99:0.91:109
chr17	75489244	rs167498	A	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:9,59:0.87:68
chr17	75489282	rs61127839	C	CA	1112.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr17	75494705	rs2627223	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	75494746	rs1059485	A	G	890.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.84;ReadPosRankSum=2.482;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr17	75494787	rs5822173	T	TC	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr17	75495065	rs448203	T	C	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:23,146:0.86:169
chr17	75495397	rs9038	T	C	5970.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:47,256:0.84:303
chr17	76087407	rs60735984	C	CA	664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-0.080;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:23,49:0.68:72
chr17	76113954	rs2613516	G	A	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:34,147:0.81:181
chr17	76114963	rs2748430	C	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr17	76114975	rs2748429	G	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr17	76115181	rs2252496	A	T	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:28,78:0.74:106
chr17	76115301	rs58711252	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:86,34:0.28:120
chr17	76115353	rs2748428	T	C	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr17	76116017	rs743047	C	A	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:14,89:0.86:103
chr17	76116153	rs2926778	T	C	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	76116233	.	CTTTTTT	C,CTTT	275.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.21;ReadPosRankSum=0.134;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:1,4,8:0.31,0.62:13
chr17	76117361	rs2073285	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	76117570	rs2613520	G	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:54,17:0.24:71
chr17	76117971	rs1997978	G	A	10168.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr17	76118834	rs2057188	G	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.818;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:200,33:0.14:233
chr17	76118887	rs1474865	G	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-2.256;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:134,23:0.15:157
chr17	76119930	rs55677349	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:8,41:0.84:49
chr17	76120065	rs2613522	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=2.717;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:215,33:0.13:248
chr17	76121760	rs7502920	C	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:8,38:0.83:46
chr17	76121864	rs2748427	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.411;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:155,29:0.16:184
chr17	76122078	rs761772	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=2.463;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr17	76128386	rs1354985	G	C	5879.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:48,238:0.83:286
chr17	76128662	rs1396149	G	C	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:30,112:0.79:142
chr17	76129339	rs376057	C	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=-0.425;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr17	76129342	rs450474	T	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.533;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr17	76129636	rs417780	T	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=8.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.114;SOR=1.787;set=HC	GT:AD:AF:DP	0/1:93,23:0.20:116
chr17	76137198	rs369764	T	G	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	76157044	rs72898209	C	T	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:37,171:0.82:208
chr17	76157266	rs4071641	T	C	10435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.71;ReadPosRankSum=-0.212;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:58,261:0.82:319
chr17	76157271	rs72898212	G	A	10230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.10;ReadPosRankSum=-0.559;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:53,247:0.82:300
chr17	76157343	rs72898214	C	A	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:20,75:0.79:95
chr17	76166939	rs1079170	C	G	11123.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:135,470:0.78:605
chr17	76170830	rs1065768	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr17	76171330	rs2854702	C	T	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:29,94:0.76:123
chr17	76178748	rs1143697	T	C	3558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.24;ReadPosRankSum=-0.122;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:33,93:0.74:126
chr17	76178751	rs1143696	C	T	3411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.46;ReadPosRankSum=-0.085;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:29,83:0.74:112
chr17	76182766	.	A	AAGGGGAGGGG	1126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.96;MQRankSum=2.245;QD=34.14;ReadPosRankSum=-0.374;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr17	76198754	rs35822441	T	C	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	76210367	rs9904341	G	C	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:35,135:0.79:170
chr17	76219123	.	TAGACTAGCTGGGGTGCCC	T	1628	.	AC=1;AF=0.500;AN=2;BRF=0.04;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=20;MQ=60.0;NF=0;NR=4;PP=1628;QD=417.75;SC=CTGGGGTGCCTAGACTAGCTG;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=4;WE=76219148;WS=76219113;set=Platypus	GT:AD:AF:DP	0/1:15,4:0.21:19
chr17	76219591	rs2071214	G	A	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	76219784	rs17882139	T	TAA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.396;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:55,9:0.14:64
chr17	76228088	rs8068943	T	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	76230025	rs9894186	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.346;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:260,52:0.17:312
chr17	76230729	rs11077350	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=1.512;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:365,50:0.12:415
chr17	76235015	rs880190	G	A	2608.31	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:14,112:0.89:126
chr17	76267843	rs872359	G	A	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.232;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:228,58:0.20:286
chr17	76354469	rs72899753	C	T	4830.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:44,202:0.82:246
chr17	76374763	rs200541156	C	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-1.106;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr17	76394042	rs16971107	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	76394241	.	C	T	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.639;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:373,74:0.17:447
chr17	76394449	rs2292644	C	T	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	76395421	rs2292643	G	A	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.04;SOR=3.019;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	76395430	rs2292642	C	T	9215.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	76395750	rs12450500	C	T	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	76396963	rs3817294	A	G	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	76400236	rs3744219	G	A	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	76400258	rs3744217	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	76400268	rs3826323	C	G	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=3.306;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	76410871	rs3744216	G	A	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	76411154	rs3833108	T	TG	1658.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	76419984	rs72914863	G	A	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:28,144:0.84:172
chr17	76422473	rs4969188	T	C	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	76423097	rs2271613	G	A	6676.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	76424482	rs651806	A	G	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	76433685	rs2289757	A	G	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	76433898	rs12941494	T	C	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	76435448	rs12150123	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	76449505	rs2289751	G	C	8329.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	76451921	rs8069561	A	G	5776.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	76456352	rs623336	T	C	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;MQ=60.39;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	76456403	rs148454093	C	CGTGCATGTGT,CGTGCATGTGTGTGCATGTGTGTGCATGTGT	3951.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=172;set=Intersection	GT:AF:DP	1/2:0.89,0.11:80
chr17	76457559	rs692529	T	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr17	76457910	rs640292	G	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	76462770	rs691225	G	A	5391.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:49,232:0.83:281
chr17	76475268	rs118051845	T	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.709;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:159,30:0.16:189
chr17	76481608	rs11077370	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.167;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:79,15:0.16:94
chr17	76481693	rs11872051	C	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=4.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-1.341;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:323,54:0.14:377
chr17	76481997	rs12944880	T	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=8.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.047;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr17	76482256	rs691142	A	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-1.918;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:281,44:0.14:325
chr17	76482432	rs691151	A	G	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=3.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-2.381;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:306,80:0.21:386
chr17	76488937	rs10655360	G	GTTTTTTTTTTT	1196.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;QD=39.89;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	76488973	rs1983306	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	76490083	rs691912	G	A	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	76491127	rs691652	TG	CC	13986.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	76495050	rs691291	C	T	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	76496350	rs35901117	A	C	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	76496361	rs34124297	C	G	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	76496492	rs2028734	A	G	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	76496577	rs2028735	C	T	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	76497778	rs671899	T	C	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	76497920	rs690844	C	A	12855.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:1,479:1.00:480
chr17	76498692	rs930571	C	T	10136.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	76502734	rs11077378	T	C	457.96	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr17	76503593	rs9896398	T	C	7064.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:47,295:0.86:342
chr17	76503624	rs626439	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.466;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:240,33:0.12:273
chr17	76503678	rs59853990	C	A	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-1.055;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:240,48:0.17:288
chr17	76503966	rs9902653	T	C	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:24,83:0.78:107
chr17	76506607	rs867654	G	A	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:27,103:0.79:130
chr17	76557862	rs894966	T	C	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:46,165:0.78:211
chr17	76558159	rs2376587	T	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	76565341	rs72920970	G	A	7604.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	76566963	.	AAAAAG	A	512.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.37;ReadPosRankSum=-0.473;SOR=0.504;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr17	76567013	rs12948559	C	T	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	76567332	rs12949510	C	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	76567707	rs894968	T	C	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	76567883	rs4969148	G	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	76567910	rs4969149	G	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	76568716	rs8073667	G	T	1118.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=13.222;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.64;ReadPosRankSum=1.812;SOR=6.041;set=HC	GT:AD:AF:DP	1/1:1,41:0.98:42
chr17	76569056	rs12951733	G	T	1055.78	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr17	76817090	rs3744793	C	T	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:56,192:0.77:248
chr17	76867185	rs55743137	G	T	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:12,64:0.84:76
chr17	76897733	rs12941365	G	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr17	76897974	rs4789936	C	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:18,70:0.80:88
chr17	76970879	rs3744166	A	G	8792.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	76993546	rs8077024	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=-1.989;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:161,22:0.12:183
chr17	77076440	rs3744186	G	T	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:23,143:0.86:166
chr17	77081913	rs62063825	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.717;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr17	77086806	rs62063826	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr17	77086851	rs148863918	G	GT,GTT	1107.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.412;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.31;ReadPosRankSum=0.315;SOR=0.278;set=HC	GT:AD:AF:DP	1/2:8,42,14:0.66,0.22:64
chr17	77087005	rs112100897	C	CA	5977.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:28,171:0.86:199
chr17	77088634	rs10676066	G	GTAAT	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	77088790	rs11286198	GA	G	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.744;QD=9.91;ReadPosRankSum=0.844;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr17	77089515	rs4789891	G	T	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr17	77089629	rs12602626	T	A	1400.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=1.476;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:28,80:0.74:108
chr17	77089630	rs371204042	GA	G	836.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.758;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:48,61:0.56:109
chr17	77089873	rs112110060	CCACACA	CCACACACACA,C	84.37	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=41;set=Intersection	GT:AF:DP	1/1:1.00:4
chr17	77090473	rs61042144	A	G	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:24,81:0.77:105
chr17	77090637	rs200668420	TGGGAGGAGGGTGG	T	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.180;QD=28.53;ReadPosRankSum=0.792;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr17	77093026	rs8072150	T	C	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:21,79:0.79:100
chr17	77093255	rs147472360	TC	T	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	77093734	rs59021665	A	G	2056.18	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:13,94:0.88:107
chr17	77093768	rs58352742	T	C	6017.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:52,253:0.83:305
chr17	77097649	rs11651975	G	A	4093.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:27,170:0.86:197
chr17	77097811	rs2612798	G	C	1892.03	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:12,78:0.87:90
chr17	77102966	rs36122090	T	TC	2555.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	77751983	rs71368052	C	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	77752143	rs150471517	G	A	3873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-1.867;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:33,178:0.84:211
chr17	77752147	rs56050112	T	C	8878.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.73;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	77753245	rs143293175	C	CTG	3640.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.85;QD=42.33;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	77758691	rs3751957	G	A	8598.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:78,375:0.83:453
chr17	77809254	.	G	A	2846.77	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:25,120:0.83:145
chr17	77809591	.	GC	G	1510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=15.014;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.635;QD=8.83;ReadPosRankSum=0.342;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:92,79:0.46:171
chr17	77811733	rs371298714	TA	T	298.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.555;QD=14.23;ReadPosRankSum=-1.490;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	77811854	rs2289728	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	77926491	rs4889804	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=3.115;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:191,48:0.20:239
chr17	78010413	rs3752042	C	A	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:9,53:0.85:62
chr17	78010548	rs3752041	C	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-1.586;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:309,57:0.16:366
chr17	78010710	rs3752040	C	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:20,108:0.84:128
chr17	78011842	rs3764438	G	A	387.90	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr17	78013724	rs2289527	G	C	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	78021037	rs7207441	A	G	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:49,138:0.74:187
chr17	78021214	rs7212525	T	C	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:9,58:0.87:67
chr17	78021260	rs7212643	T	C	850.41	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:3,29:0.91:32
chr17	78022378	rs2289530	C	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.570;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:70,16:0.19:86
chr17	78023614	rs7219552	G	A	1393.18	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:6,52:0.90:58
chr17	78023722	rs2289531	C	T	5412.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:34,225:0.87:259
chr17	78032915	rs11654770	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr17	78055758	rs35578653	T	G	6263.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:49,265:0.84:314
chr17	78061317	rs11150839	A	C	654.74	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chr17	78061353	rs11150840	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr17	78064015	rs4889953	G	C	9347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-3.155;QD=24.66;ReadPosRankSum=0.082;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:65,314:0.83:379
chr17	78064064	rs7207166	G	A	6504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.023;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.85;MQRankSum=-5.792;QD=25.11;ReadPosRankSum=-2.005;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:56,203:0.78:259
chr17	78064145	.	A	ACAC	2921	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=3;HapScore=1;MGOF=19;MMLQ=24;MQ=48.61;NF=49;NR=89;PP=2921;QD=20;SC=TGCACGAACAAGGGACGCGCG;SbPval=0.39;Source=Platypus;TC=182;TCF=60;TCR=122;TR=138;WE=78064153;WS=78064135;set=Platypus	GT:AD:AF:DP	1/0:44,138:0.76:182
chr17	78064216	.	CAGCACGTGCATGAACAACACAGGACACACACA	C	1864.73	.	AC=1;AF=0.500;AN=2;DP=344;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr17	78069324	rs1561810	C	A	4909.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:39,207:0.84:246
chr17	78070996	rs72849388	C	T	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:23,99:0.81:122
chr17	78071052	rs12952612	T	C	4790.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:44,209:0.83:253
chr17	78071247	rs59252872	A	G	2962.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:24,119:0.83:143
chr17	78073201	rs55990144	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr17	78073355	rs56407805	A	G	1641.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=5.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.78;ReadPosRankSum=-1.937;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:9,70:0.89:79
chr17	78073562	rs2304854	A	G	4190.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:36,186:0.84:222
chr17	78073589	rs2304853	T	C	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:27,137:0.84:164
chr17	78078709	rs1800300	T	C	13598.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:110,537:0.83:647
chr17	78079481	rs8069491	C	G	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:22,67:0.75:89
chr17	78079509	rs12452721	T	G	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:28,90:0.76:118
chr17	78079544	rs3816256	C	G	3218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=-0.769;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:44,141:0.76:185
chr17	78079597	rs1042393	A	G	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:34,149:0.81:183
chr17	78079669	rs1042395	G	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:11,79:0.88:90
chr17	78081307	rs78855075	C	T	4270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.98;ReadPosRankSum=-0.277;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:37,188:0.84:225
chr17	78081526	rs3071247	A	AGCAGCGG	8490.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:63,223:0.78:286
chr17	78081551	rs2304845	T	C	6754.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:48,168:0.78:216
chr17	78081661	rs1800303	A	T	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:34,161:0.83:195
chr17	78081707	rs2252455	G	A	3223.88	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:17,138:0.89:155
chr17	78081982	rs2241888	G	A	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:29,114:0.80:143
chr17	78082005	rs2241887	C	T	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:36,153:0.81:189
chr17	78082504	rs1800304	G	A	3284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-1.439;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:38,145:0.79:183
chr17	78083726	rs2278619	A	G	7576.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:74,336:0.82:410
chr17	78083791	rs1800305	C	T	7841.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:76,336:0.82:412
chr17	78084507	rs2304844	G	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:6,54:0.90:60
chr17	78084688	rs2304843	C	A	9503.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:66,409:0.86:475
chr17	78084940	rs199788201	GC	G	958.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=2.118;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr17	78084942	rs4889817	G	T	967.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.46;ReadPosRankSum=1.426;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr17	78086043	rs2304838	C	T	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:19,117:0.86:136
chr17	78086846	rs2304836	A	G	4847.56	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:26,211:0.89:237
chr17	78090928	rs2304832	G	A	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:22,119:0.84:141
chr17	78091405	rs1126690	G	A	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:32,200:0.86:232
chr17	78092063	rs1042397	G	A	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:27,133:0.83:160
chr17	78093221	rs2229221	G	A	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:14,65:0.82:79
chr17	78111449	rs2289535	A	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr17	78111877	rs2361710	T	C	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:31,131:0.81:162
chr17	78114991	rs8082247	T	C	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:18,84:0.82:102
chr17	78115484	rs935117	A	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:11,60:0.85:71
chr17	78120810	.	GCCGCTGCCGACCTCGCTGTGCCGCTGCCGACCTCGC	G	1690.73	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,43:0.80:54
chr17	78157592	rs11656949	C	T	2109.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:23,103:0.82:126
chr17	78157995	rs4889990	G	A	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:30,100:0.77:130
chr17	78158063	rs4889991	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr17	78161928	rs114702862	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr17	78164411	.	C	CA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.00;MQRankSum=2.006;QD=6.54;ReadPosRankSum=1.633;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr17	78169233	rs142981600	C	T	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:8,96:0.92:104
chr17	78169374	rs61751630	C	T	6365.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:61,262:0.81:323
chr17	78184393	rs7503034	C	T	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	78187720	rs35087113	A	G	12273.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	78187721	rs34029730	CAG	C	12265.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	78187954	rs6565647	A	G	8170.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	78193831	rs4889841	T	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	78195772	rs12946329	C	T	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	78196742	rs5822330	T	TGTG	2805.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.64;QD=43.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	78201554	rs6565652	T	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	78201783	rs6565653	T	G	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	78210944	rs8070283	G	A	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	78211215	rs28399176	T	A	1155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.28;ReadPosRankSum=-1.422;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:7,50:0.88:57
chr17	78215441	rs12943906	A	G	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	78215566	rs12942462	T	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-2.151;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:281,45:0.14:326
chr17	78219065	rs7406843	C	A	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.841;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:476,95:0.17:571
chr17	78219100	rs7406844	C	T	11336.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	78219908	rs34818744	T	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.032;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:452,71:0.14:523
chr17	78220304	rs58412367	G	A	5108.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:52,224:0.81:276
chr17	78222064	rs11871932	T	G	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:32,150:0.82:182
chr17	78222280	rs7209848	A	G	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	78222565	rs7214131	A	G	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	78222661	rs9904116	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	78223103	rs8064518	C	A	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	78225055	rs8078855	G	T	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	78252770	rs7219131	T	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.430;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:70,25:0.26:95
chr17	78261730	rs17853714	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.344;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:355,73:0.17:428
chr17	78261805	rs7215243	A	G	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-1.066;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:276,62:0.18:338
chr17	78264298	rs11651637	G	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=-1.334;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr17	78268496	rs9890495	C	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr17	78280030	rs8066993	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.609;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr17	78281088	rs61087724	G	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.069;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.976;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.335;QD=0.55;ReadPosRankSum=2.006;SOR=1.599;set=HC	GT:AD:AF:DP	0/1:81,11:0.12:92
chr17	78283084	rs12945169	G	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.118;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.870;SOR=2.016;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr17	78292945	rs6565666	G	A	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:28,114:0.80:142
chr17	78293189	rs55996424	A	T	6968.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:46,296:0.87:342
chr17	78298938	rs6565674	A	G	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	78299044	rs150847252	G	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr17	78302157	rs8082521	C	A	5873.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	78305871	rs10782008	G	A	6612.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	78306102	rs9913636	G	C	9262.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	78306280	rs8074015	A	G	7489.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	78306308	rs9908287	C	G	6089.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	78308136	rs11658902	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	78311360	rs7211876	C	T	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:8,92:0.92:100
chr17	78311508	rs4890009	G	A	8900.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	78319136	rs9674961	G	A	9348.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	78319380	rs4890012	G	C	7876.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	78323445	rs35993981	T	A	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	78323757	rs7223115	T	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	78324048	rs9944443	T	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	78324259	rs12051723	G	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:6,78:0.93:84
chr17	78327358	rs7216493	G	A	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	78332396	rs9915562	A	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	78333840	rs8067292	T	C	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	78348494	rs6565681	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	78350079	rs144239294	T	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.272;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:253,43:0.15:296
chr17	78354661	rs4889848	C	T	13017.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr17	78362300	rs6565683	A	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	78388947	rs41299328	G	T	5766.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:58,246:0.81:304
chr17	78395734	rs34933300	G	A	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.470;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:107,34:0.24:141
chr17	78396091	rs9907097	C	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:5,89:0.95:94
chr17	78401588	rs8065290	G	T	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	78404175	rs113730607	ATTTG	A	7960.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	78444658	rs12943620	T	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	78444679	rs28364735	T	C	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:21,64:0.75:85
chr17	78444948	rs11869626	A	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.141;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:58,11:0.16:69
chr17	78445702	rs1131609	A	G	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	78446973	rs188009449	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-1.207;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:95,17:0.15:112
chr17	78449948	rs144443274	C	T	8043.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:63,333:0.84:396
chr17	78519519	rs61750765	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.098;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:79,17:0.18:96
chr17	78599562	rs17848685	C	G	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:13,64:0.83:77
chr17	78617439	rs6565469	T	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	78681590	rs2306690	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.462;SOR=1.390;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr17	78765219	rs4969429	A	G	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:38,130:0.77:168
chr17	78820212	rs3829572	G	A	4113.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:37,170:0.82:207
chr17	78820329	rs3751945	C	T	6439.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:75,285:0.79:360
chr17	78820374	rs2589156	G	A	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-2.136;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:217,58:0.21:275
chr17	78854056	rs6420478	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=1.507;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:114,20:0.15:134
chr17	78857376	rs140548384	CAG	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.315;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:62,7:0.10:69
chr17	78896488	rs2271602	C	T	2163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.270;ClippingRankSum=0.000;DB;DP=1443;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.400;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:1197,235:0.16:1432
chr17	78896529	rs2271603	C	T	28839.77	.	AC=1;AF=0.500;AN=2;DB;DP=1528;set=Intersection	GT:AD:AF:DP	0/1:275,1246:0.82:1521
chr17	78897547	rs7217786	C	T	4329.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:35,163:0.82:198
chr17	78897561	rs6565491	C	T	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	78919558	rs1567962	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.123;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:113,19:0.14:132
chr17	78921117	rs4969231	C	T	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:20,71:0.78:91
chr17	78923178	rs3751940	C	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.182;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:195,49:0.20:244
chr17	78938134	rs55677452	C	T	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-1.131;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:267,58:0.18:325
chr17	78970779	rs12951796	G	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.361;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:83,23:0.22:106
chr17	78970909	rs4969334	A	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.997;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr17	78971176	rs9989475	A	G	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.274;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:350,65:0.16:415
chr17	78971182	rs9989472	C	T	1535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.443;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:341,64:0.16:405
chr17	78971283	rs8081168	A	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.511;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=-0.129;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:149,19:0.11:168
chr17	78972326	rs10871491	A	G	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	78972864	rs11870458	T	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-1.741;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:371,66:0.15:437
chr17	78978275	rs61048303	AA	GG	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.415;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=2.024;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr17	78978654	rs7219221	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr17	79006850	rs11870986	T	C	8751.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:81,361:0.82:442
chr17	79007075	rs11150764	C	A	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	79009153	rs8073224	T	C	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	79010533	rs4969350	G	A	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	79010839	rs6565527	A	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	79031773	rs374566667	ACC	A	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=-0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.38;ReadPosRankSum=-1.534;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr17	79031825	rs9898347	G	A	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	79060180	rs7210438	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr17	79077957	rs34057293	T	C	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=4.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.751;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:144,36:0.20:180
chr17	79077980	rs57792378	A	C	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.614;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:108,29:0.21:137
chr17	79080033	rs117640301	G	A	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:43,139:0.76:182
chr17	79082362	rs55879913	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.991;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:143,32:0.18:175
chr17	79089428	rs12450670	A	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	79089590	rs4969391	A	G	3327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.80;ReadPosRankSum=0.921;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:29,148:0.84:177
chr17	79093142	rs144250320	C	CCGCGTGCCCTACCTCT	1965.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr17	79093427	rs62073018	C	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=1.792;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr17	79093822	rs36000545	A	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=1.576;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr17	79095144	rs8073904	G	A	6161.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	79096645	rs72854175	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.611;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:109,25:0.19:134
chr17	79098838	rs141491493	GGCAGGGTGA	G	2738.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	79099588	rs4969252	T	C	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.72;ReadPosRankSum=0.926;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:7,26:0.79:33
chr17	79102193	rs66762502	TAGG	T	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr17	79105850	rs4969253	T	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	79108141	rs4969397	A	G	16192.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:1,594:1.00:595
chr17	79139473	rs2659034	C	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.000;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:514,82:0.14:596
chr17	79152798	rs9894262	G	A	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:20,184:0.90:204
chr17	79155116	rs906180	A	G	10993.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	79165171	rs869370	G	A	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.551;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:266,69:0.21:335
chr17	79166103	rs870187	T	C	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=12.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=-2.499;SOR=0.104;set=HC	GT:AD:AF:DP	0/1:15,79:0.84:94
chr17	79170576	rs1542961	C	T	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:17,121:0.88:138
chr17	79171805	rs7225364	C	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.224;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr17	79171967	rs2659016	A	G	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr17	79172119	rs112770207	G	C	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:26,123:0.83:149
chr17	79173184	rs2659015	T	C	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	79173224	rs2725419	T	C	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr17	79174221	rs2466773	T	C	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	79180369	rs55844247	C	G	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	79180775	rs2256881	A	G	6475.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,222:0.99:224
chr17	79182667	rs9896314	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	79202956	rs2048057	T	C	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.495;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:381,77:0.17:458
chr17	79204661	rs12937612	C	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr17	79205736	rs11655759	G	A	5770.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:46,255:0.85:301
chr17	79210707	rs2271089	G	A	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:12,76:0.86:88
chr17	79223847	rs9902277	A	G	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:30,175:0.85:205
chr17	79225851	rs9915417	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr17	79227092	rs9910167	G	A	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:17,131:0.89:148
chr17	79244802	rs2292184	T	C	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:29,129:0.82:158
chr17	79244903	rs11150779	A	G	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:26,106:0.80:132
chr17	79246270	rs3841622	G	GC	720.06	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr17	79249997	rs9898133	C	T	5378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.912;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=-0.686;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:29,232:0.89:261
chr17	79255912	rs7213540	C	T	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	79255998	rs10871494	G	A	9837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.40;ReadPosRankSum=-0.276;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:77,430:0.85:507
chr17	79257138	rs76572820	G	A	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.884;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:482,84:0.15:566
chr17	79258787	rs8077394	A	G	5705.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	79263397	rs75982513	C	T	40.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:27,6:0.18:33
chr17	79268562	rs8064597	A	G	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	79268733	rs115343321	T	C	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.423;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.359;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:108,26:0.19:134
chr17	79372928	.	AGTGTGT	A,AGTGTGTGTGT	1865.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=54;set=Intersection	GT:AF:DP	1/1:0.96:48
chr17	79373203	rs182760976	C	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.293;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=3.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.327;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:150,25:0.14:175
chr17	79384819	rs4969436	A	G	1870.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.50;ReadPosRankSum=-0.411;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:10,77:0.89:87
chr17	79385044	rs56931525	C	T	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr17	79385274	.	C	CCCTG	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=3.075;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr17	79389251	rs9897258	C	T	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	79389486	rs11870740	G	A	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	79390260	rs151241907	G	GGTGT	1219.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr17	79390277	.	G	A	1175	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=3;MGOF=63;MMLQ=26;MQ=58.24;NF=36;NR=8;PP=1175;QD=27.4948002852;SC=GTGTGTGTGTGTGTCCATGAG;SbPval=1.0;Source=Platypus;TC=137;TCF=74;TCR=63;TR=44;WE=79390285;WS=79390244;set=Platypus	GT:AD:AF:DP	1/0:93,44:0.32:137
chr17	79390298	.	T	TGCGTGTGCGCGTGTGTGTCCATGAAAATGGGTGTGTGCATGTGTATGTCCATGAGGATGGGTGTGTGC,TGC	3718.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=86;set=Intersection	GT:AF:DP	1/1:1.00:6
chr17	79390370	rs36169187	CGT	C	13567.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr17	79395814	rs34098647	A	AT	1574.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:33,88:0.73:121
chr17	79402603	rs77984483	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.512;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:152,30:0.16:182
chr17	79409176	.	C	T	2857.77	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:22,117:0.84:139
chr17	79409309	rs12938890	A	G	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr17	79427258	rs72634331	G	A	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=-1.219;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr17	79427822	rs3744148	C	T	4637.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:28,194:0.87:222
chr17	79429711	rs3736072	C	T	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:25,141:0.85:166
chr17	79478019	rs1139405	G	A	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	79478916	rs9910792	G	T	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	79479469	rs8064532	A	C	15469.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:1,551:1.00:552
chr17	79495519	rs2075720	C	T	6727.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	79497036	rs12937453	C	A	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	79502217	rs367734858	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.476;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.006;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:132,23:0.15:155
chr17	79508400	rs14422	T	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:7,118:0.94:125
chr17	79508506	rs2228698	G	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:8,76:0.90:84
chr17	79512647	rs79372565	C	T	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:27,103:0.79:130
chr17	79512944	rs140093334	TC	T	4461.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:34,135:0.80:169
chr17	79513892	rs202032434	A	AG	2322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=1.035;QD=24.45;ReadPosRankSum=1.685;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:16,79:0.83:95
chr17	79515124	rs62076030	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr17	79517183	rs80125356	CA	TG	4849.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;JOINED;set=Intersection	GT:AD:AF:DP	0/1:30,119:0.80:149
chr17	79526569	rs4076819	C	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.047;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr17	79530967	rs62073395	T	G	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.693;QD=17.55;ReadPosRankSum=-0.046;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:20,80:0.80:100
chr17	79532654	rs3934711	G	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr17	79539213	rs117824378	T	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=28.75;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	79564304	rs62074671	G	T	3246.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:27,139:0.84:166
chr17	79567610	rs7213849	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr17	79573860	rs10695650	C	CTTAA	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.436;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:87,13:0.13:100
chr17	79573884	rs62074677	T	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:13,71:0.85:84
chr17	79577127	rs8077038	T	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.970;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chr17	79580173	rs6565601	C	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,40:0.87:46
chr17	79589052	rs75305572	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr17	79589242	rs6565604	G	A	2998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.29;ReadPosRankSum=2.178;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:33,131:0.80:164
chr17	79589359	rs6565605	C	T	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:18,73:0.80:91
chr17	79596811	rs9894429	C	T	8308.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:95,360:0.79:455
chr17	79603831	rs9895741	A	G	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	79604264	rs62074750	T	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:12,77:0.87:89
chr17	79612397	rs6420484	A	G	8538.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,280:1.00:281
chr17	79614932	rs34872037	TTAAC	T	10895.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	79615225	rs7406494	G	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	79618270	rs8074225	G	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	79634774	rs61742303	A	T	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	79634813	rs11546632	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	79634944	rs201612672	G	A	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr17	79637349	rs10438817	T	C	7458.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	79637367	rs7226091	C	G	6559.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	79637565	rs7215601	T	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	79637637	rs7209877	G	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	79638805	rs11150805	C	T	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	79639198	rs7502870	C	T	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	79649304	rs3205137	A	G	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	79650181	rs34815730	A	G	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	79650675	rs8080624	C	G	18397.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:1,665:1.00:666
chr17	79650828	rs8066889	T	G	26265.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.71;ReadPosRankSum=1.053;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:1,1062:1.00:1063
chr17	79657136	rs8074828	G	C	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	79663931	rs8070488	T	C	13179.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr17	79668226	rs55837949	A	G	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	79670386	rs1132803	A	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	79679286	.	A	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.764;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-1.196;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr17	79682051	rs3204270	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.946;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:121,28:0.19:149
chr17	79682558	rs2072700	T	C	10515.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	79682650	rs8071492	G	A	7128.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.31;ReadPosRankSum=-1.317;SOR=0.343;set=HC	GT:AD:AF:DP	1/1:1,260:1.00:261
chr17	79683698	rs62077217	T	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	79683997	rs140229959	T	TGCCTCACCCCTG	16178.73	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:2,330:0.99:332
chr17	79687218	rs11150813	G	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	79769169	rs5386	C	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-0.945;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:195,26:0.12:221
chr17	79769998	.	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=7.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.961;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr17	79784101	rs374374934	GCA	G	670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.574;QD=1.29;ReadPosRankSum=-0.219;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:448,72:0.14:520
chr17	79862882	rs146889521	C	G	8237.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	79862976	.	T	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.719;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:187,36:0.16:223
chr17	79872129	rs1879568	A	G	15967.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr17	79872241	rs1879569	A	G	18803.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr17	79881138	.	A	AC	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.674;QD=4.48;ReadPosRankSum=-0.409;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr17	79891147	rs61747618	T	C	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	79893962	rs34419046	G	A	12775.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr17	79894106	.	AT	A	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=4.299;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.822;QD=0.85;ReadPosRankSum=-2.082;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:177,44:0.20:221
chr17	79898644	rs2293098	G	A	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	79899272	rs4796856	A	G	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	79899495	rs4796854	G	A	7016.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	79899698	rs4796852	G	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	79911164	rs78951919	A	AG	62.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr17	79912103	rs4796851	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.19;ReadPosRankSum=-1.726;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:280,39:0.12:319
chr17	79912164	rs79066457	G	A	3893.31	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:17,152:0.90:169
chr17	79914360	rs113956329	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr17	79914661	rs35872546	T	C	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.078;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:287,70:0.20:357
chr17	79915629	rs36023555	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	79915863	rs34107062	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-1.805;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:133,23:0.15:156
chr17	79915907	rs74002707	G	A	2284.82	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:10,91:0.90:101
chr17	79936986	rs55671960	T	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.057;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:73,15:0.17:88
chr17	79952916	rs116096769	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.774;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:93,18:0.16:111
chr17	79952944	rs59606152	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.057;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:67,11:0.14:78
chr17	79954544	rs8074498	T	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.487;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:156,29:0.16:185
chr17	79977813	rs4969471	C	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=8.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-1.818;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:109,17:0.13:126
chr17	79980891	rs4444402	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.418;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:52,11:0.17:63
chr17	79982477	rs11659000	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=6.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.357;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:123,22:0.15:145
chr17	79986156	rs72861736	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-1.454;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:180,26:0.13:206
chr17	79990728	rs72861739	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=2.430;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:352,62:0.15:414
chr17	79990972	rs10708637	CG	C	2075.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	79994019	rs8067668	A	G	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.187;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:261,50:0.16:311
chr17	79994026	rs6502047	G	A	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.346;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:279,54:0.16:333
chr17	79994600	rs61739740	C	T	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-1.314;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:408,97:0.19:505
chr17	79995490	rs113364103	C	CTT	677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.474;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:231,40:0.15:271
chr17	79995616	rs57552134	A	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.057;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:160,31:0.16:191
chr17	80000899	rs9907483	A	G	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.750;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.614;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:125,28:0.18:153
chr17	80006812	rs8069068	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr17	80006957	rs12948507	A	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.719;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=6.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.283;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:199,32:0.14:231
chr17	80007018	rs12939972	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=17.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=1.088;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:297,51:0.15:348
chr17	80007055	rs62078730	T	C	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.599;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:424,77:0.15:501
chr17	80007080	rs28404464	T	C	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=659;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.209;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:564,89:0.14:653
chr17	80007088	rs28696285	C	G	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=2.016;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:608,89:0.13:697
chr17	80007307	rs11653935	A	G	2546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=1866;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.238;QD=1.37;ReadPosRankSum=0.576;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:1551,310:0.17:1861
chr17	80007887	rs9915228	A	G	2617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.229;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:511,103:0.17:614
chr17	80007897	rs9915742	G	T	2547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.783;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:487,97:0.17:584
chr17	80008018	rs9893491	A	G	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.888;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.566;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:300,49:0.14:349
chr17	80008392	rs9916764	G	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.027;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:299,56:0.16:355
chr17	80008676	rs4464142	A	C	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	80009156	rs28552909	T	G	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-2.127;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:79,14:0.15:93
chr17	80010284	.	C	T	5674.77	.	AC=1;AF=0.500;AN=2;DP=296;set=Intersection	GT:AD:AF:DP	0/1:55,240:0.81:295
chr17	80013235	rs4969464	A	G	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	80014861	rs4969484	T	G	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.587;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:291,56:0.16:347
chr17	80018714	rs58204115	C	T	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=2.093;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:449,104:0.19:553
chr17	80020974	rs4531805	C	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.008;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr17	80038952	rs4246444	T	G	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	80039028	rs4246445	A	G	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	80039481	rs1140616	G	A	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	80039748	.	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.764;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=6.422;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.084;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr17	80039810	.	GAGA	G	1396	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=3;HapScore=4;MGOF=15;MMLQ=24;MQ=59.34;NF=17;NR=0;PP=1396;QD=84.1176470588;SC=GGGCTGCGGGGAGAAGGTGGG;SbPval=1.0;Source=Platypus;TC=20;TCF=20;TCR=0;TR=17;WE=80039826;WS=80039793;set=Platypus	GT:AD:AF:DP	1/0:3,17:0.85:20
chr17	80039818	.	G	C	1070	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=4;HapScore=4;MGOF=15;MMLQ=24;MQ=59.6;NF=26;NR=0;PP=1070;QD=42.4912004826;SC=GGGAGAAGGTGGGGGTGGGGA;SbPval=1.0;Source=Platypus;TC=65;TCF=34;TCR=31;TR=26;WE=80039826;WS=80039793;set=Platypus	GT:AD:AF:DP	1/0:39,26:0.40:65
chr17	80040607	rs4969465	T	C	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	80041466	rs2229425	G	A	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.457;QD=1.56;ReadPosRankSum=0.270;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:564,116:0.17:680
chr17	80043349	rs17848939	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=4.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=1.265;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:148,36:0.20:184
chr17	80045086	rs4485435	G	C	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:30,158:0.84:188
chr17	80050272	rs17848925	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.40;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	80050554	rs10591316	CGG	C	970.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;QD=35.95;SOR=6.666;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	80051183	rs2228309	A	G	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	80059487	rs1127678	C	T	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	80059596	rs13949	T	C	5411.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.79;ReadPosRankSum=0.860;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:2,200:0.99:202
chr17	80059690	rs61735692	G	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.081;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:161,32:0.17:193
chr17	80059758	rs7225637	G	A	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	80065244	rs112663677	C	CGGGAGTG	1691.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	80071244	rs7211808	T	C	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	80071450	rs11653662	G	A	9654.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr17	80085283	rs73360060	C	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.21;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	80085295	rs74001545	C	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.89;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	80085326	rs62078305	G	A	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	80085341	rs62078306	A	G	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	80085633	rs11077969	A	G	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	80085703	rs7213172	G	T	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,136:0.99:138
chr17	80086386	rs7406162	C	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	80086389	rs7406163	C	T	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	80086395	rs4625783	T	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	80086597	rs4459614	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	80092171	rs4789752	A	G	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	80130873	.	C	G	563.89	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:2,20:0.91:22
chr17	80141907	rs72146162	GCACA	G,GCACACA	397.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.840;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.084;SOR=0.307;set=HC	GT:AD:AF:DP	1/2:6,10,18:0.29,0.53:34
chr17	80146089	rs4789729	G	A	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	80159403	rs11657459	C	A	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	80159566	rs8072670	T	C	13187.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr17	80159665	rs11653797	G	A	12330.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr17	80193928	rs144588703	C	T	3041.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:28,131:0.82:159
chr17	80194777	rs7215409	G	A	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:22,105:0.83:127
chr17	80194970	rs56956218	T	TG	4810.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:32,166:0.84:198
chr17	80195582	rs9303026	T	C	11415.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	80198007	rs9901910	G	C	8543.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	80206668	rs141714873	A	C	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:41,163:0.80:204
chr17	80207992	rs7406428	A	G	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:30,126:0.81:156
chr17	80223554	rs112966915	A	AG	1914.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:13,59:0.82:72
chr17	80231039	rs377541613	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr17	80231314	rs11552085	T	C	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:6,102:0.94:108
chr17	80274062	.	C	T	2033.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:13,87:0.87:100
chr17	80275253	rs3176829	T	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	80280865	rs11077986	G	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.363;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:490,74:0.13:564
chr17	80332251	rs11654140	T	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.017;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:290,63:0.18:353
chr17	80352138	rs6502106	T	C	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.543;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr17	80352234	rs62079522	G	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.591;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:259,54:0.17:313
chr17	80352303	rs62079523	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=3.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.829;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:321,62:0.16:383
chr17	80355975	rs62079527	C	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.150;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:90,17:0.16:107
chr17	80356019	rs9905077	C	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.744;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:143,26:0.15:169
chr17	80356315	rs6502107	A	G	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	80367206	rs62080965	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr17	80367353	rs7211306	G	A	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:16,59:0.79:75
chr17	80369128	rs9916119	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr17	80373452	rs4789769	C	T	5422.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:54,237:0.81:291
chr17	80376170	.	G	GC	415.73	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr17	80391684	rs4789773	A	G	7650.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:53,341:0.87:394
chr17	80394530	rs4789777	G	T	6685.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:32,281:0.90:313
chr17	80397484	rs28561791	A	G	5290.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:45,212:0.82:257
chr17	80397746	rs74549364	G	C	7825.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:60,320:0.84:380
chr17	80399193	rs7501824	C	T	558.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.26;ReadPosRankSum=-1.858;SOR=1.589;set=HC	GT:AD:AF:DP	0/1:3,26:0.90:29
chr17	80401946	rs2306758	A	G	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:21,107:0.84:128
chr17	80402045	rs67228117	T	C	1714.78	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:10,70:0.88:80
chr17	80402296	rs7221125	G	A	6664.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:53,271:0.84:324
chr17	80403894	rs2291394	G	A	2646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.91;ReadPosRankSum=-1.541;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:22,118:0.84:140
chr17	80404326	rs11077994	G	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.929;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.320;SOR=1.741;set=HC	GT:AD:AF:DP	0/1:91,17:0.16:108
chr17	80405552	rs3751913	T	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr17	80426550	rs3214988	TA	T	3405.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;MQ=60.35;set=Intersection	GT:AD:AF:DP	0/1:16,104:0.87:120
chr17	80430359	.	C	CA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=5.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.763;SOR=1.795;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr17	80438165	.	G	GCA	1673.73	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:17,61:0.78:78
chr17	80438825	rs35643784	AG	A	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=1.728;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr17	80439606	rs61126963	CA	C	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.622;QD=8.89;ReadPosRankSum=-1.586;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:19,50:0.72:69
chr17	80439733	rs9909476	C	T	5463.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:52,239:0.82:291
chr17	80439925	rs9905527	T	C	569.78	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr17	80440296	rs149259276	T	TAAAACATGCGCGGTGGGCTGTTGACAAAATA	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.48;ReadPosRankSum=-1.587;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr17	80443296	rs11453409	C	CA	811.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr17	80443309	rs9890316	G	A	1829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.775;QD=18.48;ReadPosRankSum=-0.250;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:25,74:0.75:99
chr17	80521092	rs4789795	A	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr17	80521135	rs4789796	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr17	80540585	rs2306759	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-2.277;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:67,10:0.13:77
chr17	80543972	rs12150682	C	T	9838.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:79,419:0.84:498
chr17	80545156	rs6502124	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	80559167	rs3794716	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:64,20:0.24:84
chr17	80601769	rs59318270	TA	T	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-1.359;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:156,36:0.19:192
chr17	80606079	rs9789075	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.744;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr17	80617552	rs2279395	G	A	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:43,134:0.76:177
chr17	80619080	rs4789706	T	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	80626055	rs72853027	C	T	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:24,147:0.86:171
chr17	80626210	rs7221877	T	C	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	80656616	rs2243606	T	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	80674643	rs2250000	C	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	80674839	rs10714010	CG	C	1548.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=32.95;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	80676946	rs111661651	A	ACCACCCC	1939.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	80684638	rs2246103	T	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	80685126	rs2243446	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	80693705	rs2256322	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	80693805	rs2256316	C	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr17	80696410	rs2253149	A	C	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	80696542	rs2253132	G	A	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.97;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	80696547	rs2253131	T	A	2107.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.51;ReadPosRankSum=0.703;SOR=0.547;set=HC	GT:AD:AF:DP	1/1:10,88:0.90:98
chr17	80699093	rs2252848	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr17	80700592	rs1994554	T	C	7092.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	80700712	rs1994553	T	C	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	80706928	rs2243416	G	A	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.316;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=1.633;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:27,64:0.70:91
chr17	80708601	rs1056534	C	G	4724.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:39,196:0.83:235
chr17	80710278	rs2451217	G	C	63.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.95;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr17	80730527	rs615630	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=1.539;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr17	80763983	rs582192	C	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.244;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:73,19:0.21:92
chr17	80765322	rs668990	C	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:73,25:0.26:98
chr17	80786008	rs6502134	G	A	39654.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.263;ClippingRankSum=0.000;DB;DP=1792;ExcessHet=3.0103;FS=0.824;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=22.32;ReadPosRankSum=16.753;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:215,1562:0.88:1777
chr17	80786261	rs138156874	T	TACAC	32648.73	.	AC=1;AF=0.500;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	0/1:147,771:0.84:918
chr17	80786427	rs11364632	GC	G	25328.73	.	AC=2;AF=1.00;AN=2;DB;DP=971;set=Intersection	GT:AD:AF:DP	1/1:3,841:1.00:844
chr17	80786627	rs34655768	GCA	G	1351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=10.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.547;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:309,67:0.18:376
chr17	80786641	rs7207932	C	T	7770.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:66,313:0.83:379
chr17	80788465	rs12938126	T	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.268;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:290,64:0.18:354
chr17	80788492	rs12948179	A	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.471;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:269,59:0.18:328
chr17	80789628	rs8074277	T	C	4918.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:42,210:0.83:252
chr17	80790388	rs12450046	G	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr17	80790442	rs3744165	T	G	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	80827955	rs7222931	A	G	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	80828057	rs3744161	G	A	12120.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr17	80847429	rs150290800	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	80858669	rs9891862	G	A	10027.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr17	80861206	rs2271918	A	G	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	80878389	rs1471197	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	80878412	rs3214869	CT	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=1.333;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr17	80884125	rs2004708	A	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.094;QD=4.69;ReadPosRankSum=-0.458;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr17	80884132	rs2004707	A	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.088;QD=4.58;ReadPosRankSum=-0.769;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr17	80895933	rs3785522	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.803;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:119,20:0.14:139
chr17	80914743	rs56027815	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=8.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.596;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:142,38:0.21:180
chr17	80923536	rs4986144	C	T	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:23,158:0.87:181
chr17	81006286	rs10852789	G	A	3216.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:33,132:0.80:165
chr17	81006387	rs1143006	G	A	7674.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:72,337:0.82:409
chr17	81009487	rs73360407	C	G	431.94	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr17	81043039	rs9908756	A	G	6779.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	81050833	rs74775917	A	AG	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=3.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.679;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:298,41:0.12:339
chr17	81050982	rs7501742	G	C	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.722;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:264,47:0.15:311
chr17	81051007	rs7502442	G	T	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=4.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.046;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:213,37:0.15:250
chr17	81051887	rs7223467	T	G	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.801;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-1.026;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr17	81052423	rs8269	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.382;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr17	81083406	.	TCTCAGGGCGGCCGTGTGGGCATCCGTGTCAGAGTGCTGTGTGCCGGGCAACG	T	512.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.026;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=0.278;QD=10.68;ReadPosRankSum=-4.721;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr17	81083419	rs28399067	G	A	322.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.815;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-0.357;QD=8.28;ReadPosRankSum=2.777;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr18	117236	rs199601219	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.67;QD=29.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	180211	rs79829832	CT	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.205;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr18	196829	rs655781	G	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	197741	rs35489764	AT	A	272.74	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr18	203081	rs471274	A	C	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	204780	rs61607000	A	G	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	204815	rs56806027	T	A	971.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	204816	rs4039610	T	TAAAAA	962.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	224184	rs631343	C	G	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	252559	rs657138	G	A	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr18	260108	rs11309829	TA	T	78.82	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	260140	rs72856275	T	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	319935	rs12190	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	334742	rs2305027	C	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	334758	rs2305026	T	C	353.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	334994	rs2305025	A	G	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	618124	rs518471	T	C	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	619050	rs546696	G	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	624783	rs495688	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	624824	rs495799	T	C	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	625070	rs498466	G	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	627044	.	C	T	1113	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=1;HapScore=2;MGOF=8;MMLQ=27;MQ=58.28;NF=41;NR=2;PP=1113;QD=26.6923537802;SC=AAGAAAGAGTCGAGAAAGAAA;SbPval=0.59;Source=Platypus;TC=43;TCF=41;TCR=2;TR=43;WE=627052;WS=627013;set=Platypus	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	645176	rs565034	C	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	685797	rs2847329	C	T	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	688428	rs2847152	G	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	688463	rs2612088	G	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	690436	rs2847614	C	T	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	691173	rs2612087	G	A	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	691266	rs2612086	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	693269	rs2612083	A	C	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr18	693285	rs2606248	A	T	8252.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr18	693767	rs2612082	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	693828	rs2305996	A	C	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	693986	rs3217714	GCT	G	5811.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr18	694206	rs2847602	A	G	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	697377	rs34911737	CTT	C	6816.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr18	706322	rs3831414	C	CACTG	1480.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	706558	rs58085394	C	T	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr18	706589	rs2612102	A	G	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr18	712319	.	TCGG	T	783	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=1;HapScore=1;MGOF=16;MMLQ=24;MQ=57.0;NF=11;NR=6;PP=783;QD=48.0;SC=AGAGCTGCAGTCGGCGGGGCG;SbPval=0.59;Source=Platypus;TC=17;TCF=11;TCR=6;TR=17;WE=712329;WS=712309;set=Platypus	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	712356	.	G	T	376	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=1;HapScore=2;MGOF=73;MMLQ=24;MQ=49.42;NF=14;NR=4;PP=376;QD=22.8206229193;SC=CAAGCCGCGCGTACCATGGCG;SbPval=0.72;Source=Platypus;TC=19;TCF=14;TCR=5;TR=18;WE=712364;WS=712346;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr18	712568	rs3786349	G	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	724602	.	A	G	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.803;QD=6.70;ReadPosRankSum=1.329;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:112,63:0.36:175
chr18	724612	rs537141	A	G	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.73;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr18	904766	rs2231181	G	C	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr18	905125	rs1893154	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	905537	rs2231183	T	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	907710	rs2856966	A	G	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	909518	.	C	T	192.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr18	909561	rs2231187	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	2539016	rs8084295	C	G	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr18	2547480	rs35591317	T	C	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr18	2552886	rs10502302	G	A	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	2595443	rs12456560	G	T	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	2606596	rs4035305	CTT	C	1427.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	2610978	rs3817350	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	2688798	rs637651	G	A	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	2698125	rs626994	T	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	2705700	rs635132	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	2707619	rs2276092	G	A	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	2724930	rs633422	A	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	2740625	rs521992	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	2751475	rs300293	A	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	2763697	rs483547	C	T	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	2771516	rs300291	G	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	2847361	rs112881773	C	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	2847730	rs2289687	C	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	2909831	rs607411	C	G	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr18	2946291	rs643507	C	T	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr18	2951447	rs138599261	TAA	T	496.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr18	2960969	rs17881253	TTATTAA	T	649.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;MQ=61.26;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	2982817	rs1539792	C	A	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	3075503	rs10667835	C	CAAA	7928.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr18	3085191	rs148266515	AT	A	565.94	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:4,32:0.89:36
chr18	3085227	.	CTTTTTTTTTTTTTTTT	C	1580	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=20;HapScore=1;MGOF=30;MMLQ=18;MQ=53.2;NF=2;NR=20;PP=1580;QD=71.9545454545;SC=GCTGCTGCTGCTTTTTTTTTT;SbPval=0.6;Source=Platypus;TC=22;TCF=2;TCR=20;TR=22;WE=3085250;WS=3085217;set=Platypus	GT:AD:AF:DP	1/0:0,22:1.00:22
chr18	3089522	rs948298	G	T	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	3100429	rs7232329	G	A	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr18	3112231	rs8096379	G	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	3112568	rs8097874	C	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	3120060	rs6506068	G	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	3129131	rs8089599	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	3134953	rs200029902	A	ATT	412.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr18	3164385	rs11659820	C	T	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	3169070	rs140809501	C	CAAAAAA	1338.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;QD=38.25;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	3173873	rs10153407	G	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	3173964	rs2230163	G	A	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	3174056	rs10153428	C	A	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr18	3174084	rs150558788	C	CAT	11484.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr18	3176040	rs8099021	C	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	3176063	rs2230162	C	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	3176198	rs71297348	C	CAT	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	3188664	rs144550875	TAC	T	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.381;QD=1.74;ReadPosRankSum=-1.565;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:70,16:0.19:86
chr18	3215230	rs1662315	C	T	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	3272744	rs7242012	A	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	3272798	rs6506097	AG	TA	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	3272855	rs6506099	C	T	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	3272874	rs7407072	T	A	3235.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr18	3273153	rs7407045	C	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	3277466	rs6506100	TG	CA	8299.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	3277691	rs6506102	A	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	3450455	rs238132	C	A	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	3457185	rs11661340	T	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	3457244	rs451488	G	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	3457539	rs2229337	A	G	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	3457607	rs2229333	C	T	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	3534660	.	TTTCC	T	593.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.58;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	3534692	rs72469391	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.89;ReadPosRankSum=2.429;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr18	3742572	rs3745050	C	G	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	5196992	rs292286	T	C	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr18	5232843	rs9963665	C	T	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	5233105	rs3887348	C	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	5238208	rs1061666	C	T	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	5238412	rs9627	C	A	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	5292030	rs620652	A	G	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr18	5292207	rs11327444	CA	C	778.87	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:8,48:0.86:56
chr18	5407839	rs2874686	C	T	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	5407911	rs2322093	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	5410574	rs3817466	A	G	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr18	5420021	rs3752061	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	5423631	rs12607210	A	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	5424367	rs112527405	A	C	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	5433570	rs2272130	A	C	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr18	5433722	rs3931700	C	T	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	5630531	rs4083186	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	5630689	rs9952048	G	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	5840617	rs9965310	G	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	5840674	rs9966028	C	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	5891637	rs28656885	C	A	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr18	5956238	rs3737353	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	5956425	rs3737354	C	T	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr18	5956483	rs3737357	G	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	5956502	rs34472471	GCT	G	2280.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	5960012	.	T	TATATATATAC	367.74	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.40;QD=40.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	5960026	.	T	TAC	457.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.20;QD=45.77;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	5960038	.	C	CATATATAT	724.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.21;QD=48.32;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	5960040	rs199658556	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.78;QD=50.93;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	5960042	.	C	T	961.77	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.87;QD=45.80;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	5960048	rs368307522	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.43;QD=45.69;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	5960060	rs10658145	C	CGT	1353.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.18;MQRankSum=-0.489;QD=41.02;ReadPosRankSum=1.209;SOR=0.502;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr18	5960165	rs505559	G	A	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr18	6032384	rs150758288	T	TACAC	155.87	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	6046717	rs7234770	T	C	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	6511473	rs4798453	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	6511669	rs4798454	T	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr18	6730016	rs57509765	G	C	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	6851267	rs8087719	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	6873354	rs2282522	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	6889973	rs4239328	A	G	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr18	6890434	rs1116757	A	G	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	6890591	rs1116756	C	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	6896450	rs11081282	C	T	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	6898415	rs12185460	C	T	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	6912004	rs1346931	G	A	7568.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr18	6912143	rs1056408	A	C	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	6942295	rs733918	T	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	6947013	rs489023	C	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	6947143	rs2155697	A	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	6947362	rs12966847	C	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	6956504	rs11270496	ACAGCTCCAGCTC	A	8517.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr18	6971936	rs615809	C	T	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr18	6975859	rs28404496	T	C	209.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	6977966	rs672721	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	6978450	rs4798522	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	6997818	rs12961939	A	C	12462.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr18	6999315	rs525394	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	6999368	rs525231	C	T	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	6999377	rs525206	A	G	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.53;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	6999628	rs625106	T	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	6999694	rs693754	T	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	7008591	rs662471	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr18	7010428	rs74825364	C	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	7011413	rs619106	G	A	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	7011959	rs496865	T	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	7012123	rs9946794	A	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	7015714	rs603258	T	C	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	7016794	rs35419086	TC	T	202.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	7017322	rs539713	A	G	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	7037866	rs647595	T	C	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	7774104	rs875530	T	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	7946894	rs181169979	C	T	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	8143570	.	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	8244282	rs60751184	C	CAA	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=0.747;QD=19.30;ReadPosRankSum=-1.583;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr18	8253121	rs143656979	C	A	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	8296504	.	T	C	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=1.510;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:56,23:0.29:79
chr18	8343530	rs2279074	G	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	8783835	rs35739383	T	C	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr18	8784370	rs918272	A	G	7279.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr18	8784723	rs3744979	A	G	7217.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr18	8786117	.	C	CCCA,CCCCA	1730.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.03;QD=50.90;SOR=5.549;set=HC	GT:AD:AF:DP	1/2:0,15,19:0.44,0.56:34
chr18	8793236	rs556991	T	C	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	8809568	rs690079	G	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	8824590	rs610915	C	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	8825192	rs581894	A	G	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr18	8826083	rs3744977	G	C	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr18	9105108	rs1396740	C	T	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	9117867	rs906807	T	C	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	9182329	rs149819427	T	TA	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	9182331	.	A	AACTTCAGGTAGGT	2510	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=5;NR=1;PP=2510;QD=20;SC=GTGGTGCGTAACCTATTGTAT;SbPval=0.66;Source=Platypus;TC=6;TCF=5;TCR=1;TR=6;WE=9182340;WS=9182321;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	9182332	.	C	T	116	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=5;NR=1;PP=116;QD=25.1285354245;SC=TGGTGCGTAACCTATTGTATA;SbPval=0.5;Source=Platypus;TC=9;TCF=8;TCR=1;TR=6;WE=9182340;WS=9182321;set=Platypus	GT:AD:AF:DP	1/1:3,6:0.67:9
chr18	9182332	rs60039834	C	CTTCAGGTAGGTT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	9255982	rs4798791	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	9512985	rs1813100	G	A	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	9522606	rs329007	G	A	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	9577352	rs329000	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	9614096	rs71360847	C	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	9708582	rs62078920	C	T	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	9775372	rs6506697	A	G	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	9775411	rs6506698	A	G	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	9886567	rs62078799	T	G	1315.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=3.215;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	9886568	rs112324257	TTATG	T	1306.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=3.215;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	9887394	rs2240910	C	T	14144.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.465;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.777;MLEAC=2;MLEAF=1.000;MQ=59.53;MQRankSum=0.691;QD=21.60;ReadPosRankSum=13.547;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:93,562:0.86:655
chr18	9887497	rs11081510	G	A	22581.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=37.51;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,602:1.00:602
chr18	9887546	rs2240906	G	A	23024.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=-0.082;QD=37.02;ReadPosRankSum=0.830;SOR=0.439;set=HC	GT:AD:AF:DP	1/1:1,621:1.00:622
chr18	9888069	rs2240905	A	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	10454960	rs28769876	C	G	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	10677880	rs5823112	GA	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr18	10680104	rs1944383	C	T	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	10680132	rs688237	C	T	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	10680142	rs688222	T	A	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.92;SOR=1.835;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	10680163	rs487037	G	A	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	10731428	rs2865121	C	T	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr18	10731665	rs5823116	A	AT	392.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.000;QD=17.85;ReadPosRankSum=-0.656;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr18	10736476	rs35790059	G	GT	2704.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	10736515	rs12455888	T	G	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	10741011	rs5024299	G	A	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.525;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	10743986	rs7233917	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	10744108	rs8093389	G	A	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	10748603	rs8096037	A	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	10758023	rs7407105	G	A	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr18	10759935	rs2865119	A	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	10759961	rs2865118	G	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.04;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	10762962	rs7241380	G	A	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	10763007	rs7227167	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr18	10763218	rs2865131	T	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	10784733	rs3830641	GA	G	517.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=60.77;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	10785070	rs12604151	A	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	10787047	rs6505592	G	A	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	10787199	rs11468237	GAA	G	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	10789014	rs2870106	G	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	10795041	rs6505594	A	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	10797303	rs35610200	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.94;QD=44.99;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	10797308	rs36081769	G	A	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.03;QD=42.66;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	10797338	rs145681764	T	TATC	2122.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	10797567	rs56112279	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	10979480	rs77367208	C	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	11066010	rs7236754	T	C	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	11619799	rs112261054	ATGT	A	4089.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:3,95:0.97:98
chr18	11824829	rs1647555	A	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	11824880	rs1647556	T	A	6000.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=1.441;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	11824886	rs1647557	T	G	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr18	11864707	rs4315401	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	12012457	rs635370	A	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	12014411	rs643107	T	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	12028224	rs149830011	CT	C	1597.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	12057195	rs9959517	A	G	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	12057389	rs9959781	C	G	16163.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr18	12057403	rs9959774	A	G	16484.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr18	12057809	rs9960429	G	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	12067762	rs7506731	C	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	12067777	rs6505712	T	C	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	12067919	rs12966234	G	A	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	12081940	rs4389195	A	C	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.86;QD=24.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	12094006	rs9964971	C	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	12096249	rs1986751	G	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	12097547	rs4796945	A	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	12099654	rs6505715	T	C	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	12115002	rs9959641	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	12115310	rs8091585	C	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	12115339	rs8091463	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	12115509	rs4519391	G	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	12125657	rs7243248	G	A	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	12126407	rs9303759	T	A	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr18	12254562	rs71369912	C	CCCGCGCACACACCCAT	14911.73	.	AC=2;AF=1.00;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	1/1:4,514:0.99:518
chr18	12254581	.	G	GCGCACACACCCATCCA	2963	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=6;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=14;NR=128;PP=2963;QD=20;SC=ACACCCATCCGCCCCACTGGT;SbPval=0.82;Source=Platypus;TC=312;TCF=41;TCR=271;TR=142;WE=12254589;WS=12254571;set=Platypus	GT:AD:AF:DP	0/1:170,142:0.46:312
chr18	12274371	rs45493902	G	T	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	12308243	rs8087840	T	A	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	12308245	rs8086821	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	12308377	rs8086993	C	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	12348285	rs11553521	T	C	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	12351342	rs11080572	C	T	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	12358997	rs7407640	A	G	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	12359920	rs8097342	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	12363950	rs2298542	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	12421442	rs3906620	T	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	12429313	rs3760550	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	12453005	rs499013	A	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	12512385	rs139581657	CAA	C	3230.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.303;QD=21.83;ReadPosRankSum=0.352;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:17,131:0.89:148
chr18	12512559	rs550613	C	A	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr18	12512574	rs567709	T	C	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	12546608	rs35057526	GA	G	335.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;MQ=60.67;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	12634934	rs35302137	CA	C	225.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	12634986	rs12454931	T	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	12657431	rs34472716	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	12658191	rs3902981	T	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	12658600	rs1062235	A	G	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	12662148	rs1129214	G	A	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	12662190	rs5823232	G	GA	456.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.023;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.424;QD=16.92;ReadPosRankSum=-0.278;SOR=0.160;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr18	12678486	rs12966424	A	G	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	12680595	rs35232551	CA	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-1.281;QD=5.46;ReadPosRankSum=0.438;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr18	12695415	rs34277169	C	A	98.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	12700092	rs2542173	A	G	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	12700918	rs137976891	CATAT	C	2931.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	12703067	rs3809916	A	G	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr18	12703192	rs3809919	C	T	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr18	12718593	rs2302768	A	G	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	12819041	rs7245206	C	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	12951738	rs1474043	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	12955439	rs11286163	CT	C	146.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-0.639;QD=10.48;ReadPosRankSum=-0.156;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr18	12963146	rs35999381	AT	A	1188.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.15;ReadPosRankSum=-0.126;SOR=0.415;set=HC	GT:AD:AF:DP	1/1:1,58:0.98:59
chr18	12979028	rs56263236	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	12982760	rs12955780	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	12984144	rs6505776	C	A	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	12986802	rs113784266	G	GT	603.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.29;ReadPosRankSum=-1.421;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr18	13001512	rs4499304	G	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	13001523	rs11080618	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	13008369	rs6505777	A	G	186.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	13030383	rs9964466	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	13040084	rs7229869	A	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	13049948	rs11441028	G	GA	999.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	13056333	rs2282541	C	T	7396.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr18	13068132	rs578208	T	C	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	13069782	rs6505780	C	T	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	13072979	rs1787013	T	C	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr18	13087789	rs472992	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	13087815	rs527839	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	13088673	rs498685	T	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	13095401	rs476191	A	T	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	13095609	rs474337	T	C	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr18	13096436	rs556371	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	13116432	rs1786263	G	T	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr18	13643179	rs11080665	C	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	13666768	rs1149356	A	G	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	13671976	.	C	CA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.859;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr18	13731407	rs61281036	C	CA	181	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-0.747;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr18	13742365	rs4239313	A	C	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	13759816	rs4797812	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	13759820	rs4797813	G	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	13762011	rs4461147	C	A	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	14105923	rs2159940	T	C	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	14124330	.	G	A	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.227;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=8.079;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-10.158;QD=8.95;ReadPosRankSum=2.855;SOR=0.325;set=HC	GT:AD:AF:DP	0/1:165,61:0.27:226
chr18	14124335	.	G	A	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=9.096;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-10.254;QD=8.77;ReadPosRankSum=2.385;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:172,60:0.26:232
chr18	14124343	.	T	C	1897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=10.169;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-10.887;QD=7.62;ReadPosRankSum=1.405;SOR=0.310;set=HC	GT:AD:AF:DP	0/1:189,60:0.24:249
chr18	14124346	.	C	T	1911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=10.002;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-11.312;QD=7.27;ReadPosRankSum=1.113;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:202,61:0.23:263
chr18	14124359	.	G	C	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=13.233;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-11.687;QD=2.58;ReadPosRankSum=-1.155;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:221,56:0.20:277
chr18	14156143	rs149108958	A	G	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.84;QD=25.88;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	14156241	rs115684852	A	T	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.18;QD=25.41;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	14157291	rs9959262	A	T	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr18	14157373	rs7505684	T	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	14179603	rs4797872	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;MQ=47.18;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	14378533	rs2137484	G	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	14378621	rs55811695	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	14393807	rs62080576	C	G	92.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	14393945	rs56386651	G	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	14542931	rs45554841	C	T	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:31,74:0.70:105
chr18	14542949	rs9807555	T	C	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:29,80:0.73:109
chr18	14542979	rs200806970	A	G	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.377;MLEAC=1;MLEAF=0.500;MQ=52.25;MQRankSum=-1.988;QD=1.90;ReadPosRankSum=-0.513;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:104,24:0.19:128
chr18	14543057	rs9807633	T	G	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr18	14543098	rs11873462	C	T	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	14543139	rs28535987	T	C	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	14752768	rs45620343	G	A	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	14752957	rs12457503	G	A	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr18	14779940	rs200991381	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-5.740;QD=0.99;ReadPosRankSum=-1.922;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:33,2:0.06:35
chr18	14779941	rs202240589	T	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-5.858;QD=0.97;ReadPosRankSum=-3.024;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:32,4:0.11:36
chr18	14779955	.	T	TA	127	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=4;HapScore=2;MGOF=17;MMLQ=23;MQ=54.27;NF=2;NR=1;PP=127;QD=52.6666666667;SC=ATTAACATTTTTAGATCAGAT;SbPval=0.35;Source=Platypus;TC=20;TCF=8;TCR=12;TR=3;WE=14779963;WS=14779941;set=Platypus	GT:AD:AF:DP	0/1:17,3:0.15:20
chr18	14780019	rs72873710	G	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.467;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-4.679;QD=10.18;ReadPosRankSum=1.505;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr18	14780024	rs79199021	T	C	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.684;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-4.399;QD=11.23;ReadPosRankSum=1.125;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr18	14780037	rs72873711	C	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.676;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.488;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-4.704;QD=3.90;ReadPosRankSum=1.131;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr18	14780064	rs78339886	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=10.138;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-4.206;QD=5.73;ReadPosRankSum=-1.210;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr18	14780082	rs11080793	G	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.59;QD=34.26;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	14780082	.	GC	AC,AT	196	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=45;MMLQ=28;MQ=50.1;NF=5,3;NR=14,5;PP=196,41;QD=12.145853292;SC=ATGTGAAAATGCAAAATCAGA;SbPval=0.58;Source=Platypus;TC=19;TCF=5;TCR=14;TR=19,8;WE=14780091;WS=14780072;set=Platypus	GT:AF:DP	0/1:1.00:19
chr18	14780083	.	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-3.995;QD=2.60;ReadPosRankSum=0.148;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr18	14780108	.	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-2.744;QD=4.89;ReadPosRankSum=-0.699;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr18	14780116	rs79644245	A	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-2.287;QD=5.38;ReadPosRankSum=0.140;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr18	14780130	.	G	C	287	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=3;HapScore=4;MGOF=47;MMLQ=28;MQ=50.92;NF=1;NR=4;PP=287;QD=64.3542425094;SC=CATATGCTCAGAAGAAATTCT;SbPval=0.75;Source=Platypus;TC=12;TCF=3;TCR=9;TR=5;WE=14780138;WS=14780098;set=Platypus	GT:AD:AF:DP	0/1:7,5:0.42:12
chr18	14848820	rs4090319	C	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.58;QD=25.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	14852335	rs12386087	C	A	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	18534702	rs2663699	T	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:88,33:0.27:121
chr18	18559675	rs7237677	G	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	18586412	rs112165707	A	C	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	19065494	rs7234335	C	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	19079537	rs8087553	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr18	19079853	rs4800747	A	G	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr18	19100517	rs1395251	T	C	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	19100758	rs34960489	A	ATCT	6787.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr18	19100854	rs9947441	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	19115896	rs4800780	A	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	19119801	rs1818274	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr18	19119813	.	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.354;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr18	19119974	.	GATAT	G,GAT	1947.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.60;MQRankSum=0.616;QD=29.51;ReadPosRankSum=-0.968;SOR=0.648;set=HC	GT:AD:AF:DP	1/2:4,12,50:0.18,0.76:66
chr18	19153494	rs973730	C	T	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr18	19408950	rs9989532	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	19423963	rs3216119	GT	G	649.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	19752072	.	TACC	T	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.813;QD=1.83;ReadPosRankSum=0.645;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:180,23:0.11:203
chr18	19780527	rs11352746	AC	A	3788.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	20555219	rs2336916	T	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	20586245	rs72889626	C	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	20715656	rs113232639	G	A	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	20932384	rs8084251	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	20953485	rs9944662	C	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	20953720	rs8099409	G	A	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr18	20964769	rs8094375	A	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	21017836	rs7226498	T	C	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	21033582	rs8086258	G	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	21044607	rs2291993	G	A	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	21055092	rs7235571	A	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	21083738	rs303760	C	T	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr18	21088081	rs1652381	T	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	21120381	.	TA	T	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.156;QD=2.18;ReadPosRankSum=0.956;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:83,41:0.33:124
chr18	21123536	rs11299077	TA	T	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.312;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr18	21124907	.	AC	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=1.360;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:64,10:0.14:74
chr18	21209988	rs11660305	G	A	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	21214242	rs71163626	GTTTTTTTTTTTTT	G	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.45;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	21229252	.	T	A	2344.77	.	AC=2;AF=1.00;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	21294117	rs34200895	TA	T	1094.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=21.47;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	21338276	rs6507894	C	T	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	21338515	rs11308832	TC	T	1075.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	21393229	rs11420756	A	AT	295.74	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr18	21395358	rs2155841	G	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	21400005	rs7244406	A	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	21400028	rs6507956	G	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	21404334	rs1941521	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	21413869	rs9962023	T	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	21414100	rs1109949	G	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.41;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	21414110	rs1109950	G	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.98;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	21437721	rs867448	A	G	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	21437931	rs867449	G	C	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr18	21441717	rs12965685	C	T	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	21495483	rs1541836	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	21511089	rs1154233	A	G	6606.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr18	21511172	rs1258107	G	C	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	21526087	rs2288592	C	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	21529722	rs2241643	G	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	21531906	rs11873358	C	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	21534701	rs1051149	C	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	21534701	.	CTC	ATT	1027	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=2;NR=18;PP=1027;QD=54.0233937431;SC=TCATTCTTCACTCAGGACACA;SbPval=0.57;Source=Platypus;TC=21;TCF=2;TCR=19;TR=20;WE=21534711;WS=21534691;set=Platypus	GT:AD:AF:DP	1/1:1,20:0.95:21
chr18	21534703	rs1051150	C	T	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	21662816	rs2305024	A	C	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr18	21693671	rs894931	G	A	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr18	21694618	rs4800176	G	A	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr18	21703649	rs9956079	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	21705624	rs2306811	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	21706390	rs35976434	TA	T	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.782;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr18	21706607	.	AT	A	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.077;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr18	21710321	rs12970083	C	T	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr18	21714228	rs4800548	G	T	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=24.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	21736933	rs1049683	T	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	21758169	rs370187142	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.862;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr18	21759593	rs12604451	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	21938384	rs7226913	T	C	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	21938396	rs7226922	T	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	21938658	rs7227401	T	G	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	22008913	rs582358	C	T	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	22010421	rs9783924	C	T	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	22017752	rs1941814	C	A	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	22020543	rs677688	C	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	22020686	rs182784174	G	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	22056615	rs17259800	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	22669614	rs12454983	A	G	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr18	22804244	rs4129657	T	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	23670730	rs12964835	G	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	23670736	rs34364376	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	23714109	rs7235001	T	C	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	23772224	rs141374631	G	GTAAA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	23865851	rs12456749	C	T	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	23866482	rs8089000	C	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	23872235	rs12963653	A	G	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	23875336	rs1382260	T	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	23901198	rs2276407	G	A	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	24035675	rs3753	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	24436519	rs68006382	A	G	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	24628305	rs12458504	C	T	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	24628679	rs12456126	A	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	25565082	rs1220144	A	G	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr18	25570228	rs1628684	G	C	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr18	25572837	rs1662733	G	A	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	25573308	rs1662734	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	25573622	rs2957286	G	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	25585687	rs874314	G	A	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	25593931	rs1443453	A	C	724.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr18	25616451	rs1944294	A	T	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	25727760	.	G	GA	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.728;QD=4.02;ReadPosRankSum=-2.260;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:113,56:0.33:169
chr18	28611139	rs276936	A	C	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr18	28659724	rs1658128	T	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	28662776	rs1790702	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	28666526	rs35717505	T	TTAA	2406.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	28671212	rs1790683	T	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	28671381	rs34593516	GA	G	1498.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;MQ=60.64;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	28711519	rs1789072	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr18	28712737	rs36112658	CA	C	196.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	28719674	rs1789043	A	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	28728384	rs2577067	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	28728693	rs3217442	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.691;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:61,10:0.14:71
chr18	28734749	rs2249810	A	G	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr18	28737198	rs2246736	C	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	28737299	rs2118342	T	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	28739495	rs35550730	C	CAA	695.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;QD=26.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	28935375	rs8099566	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	28966518	rs1460597	G	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	28968371	rs16959856	G	A	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	28968959	rs9956865	C	T	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	28969008	rs16959863	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	28986333	rs4799570	A	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr18	28993183	rs12960081	A	G	10501.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr18	28993501	rs7234288	C	A	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	29055957	rs1380866	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	29098323	rs2276149	G	A	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	29098345	rs9807377	C	T	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	29104564	rs3737378	C	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	29104698	rs2230233	C	T	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr18	29104878	rs62095194	G	A	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	29122799	rs2278792	G	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=28.05;SOR=2.649;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	29122922	rs10714882	GT	G	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.56;ReadPosRankSum=2.071;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	29126670	rs1791235	T	C	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr18	29237765	rs1449086	T	A	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	29237860	rs1449087	C	T	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr18	29238076	rs67738912	CA	C	493.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.378;QD=15.93;ReadPosRankSum=-1.377;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr18	29264182	rs1449081	G	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	29419462	rs7226615	C	A	984.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.776;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.542;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr18	29426868	rs682279	A	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	29432304	rs11081719	C	G	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	29432332	rs7239629	G	A	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	29432367	rs3841748	AC	A	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	29432624	rs3737374	T	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	29435778	.	TA	T	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=10.193;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=3.681;QD=2.93;ReadPosRankSum=-1.216;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:67,44:0.40:111
chr18	29438021	rs34631623	C	CT,CTT	430.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.170;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.673;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.90;MQRankSum=0.000;QD=17.23;ReadPosRankSum=0.668;SOR=0.190;set=HC	GT:AD:AF:DP	1/2:4,12,9:0.48,0.36:25
chr18	29444811	rs2291239	A	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	29477697	rs74954001	TA	T	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	29481078	rs3833187	G	GT	372.75	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr18	29493533	rs11659244	T	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.05;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	29496218	rs62093869	C	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	29497573	rs6506948	A	G	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	29617255	rs9947278	T	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	29672559	rs8095867	A	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	29708981	rs684359	G	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	29793526	rs335518	C	T	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr18	29795076	rs173032	T	C	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	29795101	rs233223	T	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	29850296	rs6506966	G	A	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	29890042	rs616601	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	29890297	rs683701	G	C	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr18	29890411	rs625361	C	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	29890448	rs628733	A	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.67;SOR=3.981;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	29890456	rs682827	G	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	30257367	rs11386624	T	TA	393.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	30349691	rs17851892	C	T	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	30351955	rs7234849	G	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	30352057	rs200605696	GCGCCGGCC	G	4694.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.30;QD=43.07;SOR=1.959;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	30563102	.	TA	T	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.029;QD=6.16;ReadPosRankSum=-0.364;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr18	30672631	rs1995096	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	30804756	rs466113	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	30846895	rs9965081	A	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	30936121	rs9948028	C	T	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	30950168	rs9965655	T	C	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	30976968	rs4447495	C	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	30977255	rs6507018	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	31225030	rs4799705	G	T	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	31241497	rs9304126	C	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	31263320	rs8086318	G	A	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr18	31312106	rs10432168	T	C	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	31314196	rs34501189	A	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	31318336	rs1845385	T	C	170.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	31318376	rs1493910	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	31320229	rs2282632	A	G	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr18	31324934	rs7232237	A	G	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	32585367	rs80105629	C	T	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	32650341	rs3744923	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	32720189	rs3786314	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	32822382	rs4799374	G	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	32823757	rs62096496	A	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	32823905	rs1054890	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	32826088	rs2278463	A	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	32836089	rs4799376	T	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	32838807	rs7229055	T	C	122.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	32886528	rs147217916	T	TAGTC	3288.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	32887914	rs1131709	A	G	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=26.41;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	32887933	rs9963614	A	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	32917570	rs142376346	G	A	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	32917644	rs2032729	T	C	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	32917780	rs5823970	G	GA	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	32948446	.	T	TTTTATTTATTTA	1979.73	.	AC=2;AF=1.00;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;QD=43.04;SOR=2.511;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	32948510	rs2909340	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	33272291	rs201969184	AAT	A	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.200;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr18	33647254	rs1789517	A	C	8559.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr18	33694120	rs1050631	G	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	33696772	rs1789504	A	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	33706614	rs1789528	C	G	8605.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr18	33709762	rs1632169	G	C	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	33713132	rs1785904	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	33713287	rs1785905	T	A	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	33718326	rs1785934	A	C	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	33719434	rs1785932	C	T	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	33722425	rs1789549	A	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	33723065	.	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.000;QD=3.51;ReadPosRankSum=2.337;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr18	33725874	rs1789546	T	G	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	33725931	rs1785928	G	A	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	33726447	rs1785927	C	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	33744677	rs684890	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	33750046	rs8299	C	T	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	33750314	rs637786	G	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	33767479	rs11665282	G	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	33778607	rs596644	C	A	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr18	33779821	rs646424	C	A	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	33779855	rs623053	C	T	6624.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr18	33779896	rs540967	A	G	9179.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr18	33780020	rs623558	A	G	11295.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr18	33783030	rs579596	T	C	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr18	33785093	rs678560	G	A	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	33785185	rs667667	A	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	33785304	rs667195	T	C	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	33793511	rs687387	T	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	33795425	rs631108	G	A	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	33848663	rs111317566	A	ATACAT	2775.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	34081849	rs17565834	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	34174958	rs8087763	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	34182800	rs34287129	A	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	34205385	rs2644253	A	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	34229169	.	CGTT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.845;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:45,5:0.10:50
chr18	34261559	rs542241	T	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	34261581	rs34100890	AG	A	1300.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	34273039	rs479570	T	C	203.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	34273440	rs483351	C	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	34385297	rs199592671	G	C	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	34539368	.	A	G	1229.77	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	34539578	rs3744904	A	G	211.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	35065374	rs5824066	CG	C	236.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	35065396	rs4799451	T	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.48;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	35145660	rs138975334	T	TCTCG	1557.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	39542407	rs33946724	GAT	G	2699.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	39570683	rs11082257	A	G	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	39623942	rs534507	A	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	40323497	rs1804730	G	T	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.285;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr18	40503735	rs199883812	GA	G	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.518;QD=2.16;ReadPosRankSum=1.289;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr18	40850296	rs3744959	G	A	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	42449243	.	C	T	3300.77	.	AC=2;AF=1.00;AN=2;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	42449305	rs647155	G	A	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	42456653	rs663651	G	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	42456670	rs3085861	C	CTCTT	5289.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	43206985	rs1484873	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	43221341	rs7233416	T	C	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr18	43243679	rs8092227	A	G	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	43245986	rs7234198	T	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	43246779	rs2170973	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	43247001	rs2156609	C	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	43248504	rs6507631	T	C	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	43248509	rs10451385	T	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	43248578	rs9304319	C	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	43252786	rs1531926	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	43253100	rs1000501	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	43258919	rs72437878	C	CT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.270;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr18	43262359	rs3745009	G	A	10231.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr18	43262501	rs3745008	C	T	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	43262532	rs3745007	C	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	43307455	rs3861806	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	43310851	rs12963324	G	A	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	43314108	rs147008420	T	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	43314401	rs35812340	G	GA	672.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.39;ReadPosRankSum=0.072;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr18	43319060	rs473429	T	C	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	43319359	rs531281	C	T	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	43328295	rs474270	G	A	3585.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.23;ReadPosRankSum=-0.939;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:2,146:0.99:148
chr18	43458470	rs145742289	G	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	43487885	.	TAA	T	444.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.34;ReadPosRankSum=0.435;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chr18	43492121	rs67738770	CAGAG	C	560.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	43497710	rs3744998	A	G	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr18	43502190	rs1075906	G	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	43505558	rs4476262	C	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	43508800	rs9965433	G	A	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	43509045	rs73953914	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	43523312	rs3745000	G	A	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	43547127	rs11301517	TG	T	3660.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	43652027	rs114538737	C	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	43652345	rs3745002	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	43670050	rs55743028	G	T	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr18	43678035	rs3753069	T	C	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	43684300	rs41274316	C	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	43684330	rs41274318	G	C	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	43684561	rs72903449	C	A	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr18	43698309	rs1866321	C	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	43702733	rs9965812	C	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	43707880	rs4243278	A	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	43707900	rs74402027	A	G	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	43833701	rs34068795	T	TCTG	4097.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	44063598	rs1377016	G	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	44086062	rs149598385	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	44114473	rs436433	T	C	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr18	44114580	rs9967253	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	44122010	rs10775482	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr18	44126909	rs1893566	T	C	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr18	44135027	rs732108	A	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	44135050	rs732109	G	A	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	44135143	rs11665444	T	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	44135328	rs62097104	C	T	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	44138902	rs4243280	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	44143153	rs36086089	C	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	44157489	rs328167	G	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	44157506	rs328166	G	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	44173449	rs328145	A	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	44181596	rs674948	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	44262112	rs72915489	G	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	44272034	rs533027	A	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	44392304	.	T	TA	210.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;MQRankSum=0.761;QD=11.68;ReadPosRankSum=0.713;SOR=0.507;set=HC	GT:AD:AF:DP	1/1:3,15:0.83:18
chr18	44560300	rs3744863	C	T	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	44560429	rs892586	C	A	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	44560875	rs2010834	C	A	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr18	44561100	rs2571028	C	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	44561516	rs2571027	C	G	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	44580919	rs2576041	C	T	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	44585955	rs7233515	G	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	44595809	rs2289036	A	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	44601611	rs3816125	A	G	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr18	44610718	rs16954999	T	C	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr18	44610879	rs7504798	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	44624438	.	G	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.695;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr18	44635048	rs2635058	C	T	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr18	44702502	rs12968552	A	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	44702718	rs2277717	C	A	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	44746460	rs1355593	A	T	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	44757226	rs7236105	G	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	44771481	rs17723754	C	T	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	44771849	rs66497764	A	ATTTTTTTTT	348.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.70;ReadPosRankSum=2.010;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr18	44773382	rs9956387	A	T	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	45395845	rs34501809	TA	T	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.654;QD=9.41;ReadPosRankSum=-1.436;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr18	45691715	rs9646522	T	C	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	45711740	rs12455480	T	C	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	46196856	rs3830253	ACCC	ACC,A	883.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=22;set=Intersection	GT:AF:DP	1/1:1.00:22
chr18	46196865	rs74363574	C	A	721.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=6.383;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.492;QD=28.87;ReadPosRankSum=0.084;SOR=4.003;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr18	46284587	rs1038308	T	C	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr18	46383898	rs937022	T	C	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr18	46385948	rs3752082	A	G	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr18	46447850	rs34151545	C	G	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr18	47088655	rs34474737	T	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	47093790	rs2000812	C	T	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	47102002	rs2276269	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	47113008	rs6507931	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	47328930	rs10680947	C	CAA	421.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.08;ReadPosRankSum=-0.581;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr18	47339798	rs2945506	G	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	47363009	rs621101	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	47373466	rs3017176	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	47375932	rs488890	C	G	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	47376103	rs490648	C	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	47376128	rs490697	A	G	1007.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.90;ReadPosRankSum=-0.967;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr18	47402280	rs657424	A	C	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	47406913	rs1217632	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	47406938	rs1217633	T	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	47455923	rs2298628	C	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	47455980	rs56278513	GA	G	195.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	47463587	rs1790797	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	47463872	rs1787519	A	G	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	47480660	rs1787299	G	A	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	47480898	rs1557359	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	47489589	rs68106090	T	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	47527817	rs12969222	T	G	8341.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr18	47563299	rs1815930	T	C	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr18	47623811	rs73448728	A	G	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	47765121	rs35839946	G	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	47777244	rs35193847	C	T	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	47778172	rs35295154	A	G	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr18	47787402	rs1899671	G	A	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	47788256	rs698617	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	47801800	rs140690	G	A	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	47802971	rs10775495	A	G	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr18	47809871	rs12458654	G	T	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr18	47810351	rs7228084	A	G	5789.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr18	47810731	rs2276367	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	47811305	rs2276366	T	G	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr18	47811374	rs17660776	G	A	9186.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr18	47902337	rs1970679	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	47906416	rs1441293	A	G	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	47906690	rs1441294	T	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	47906719	rs1441295	T	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	47908556	rs6507992	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	47917735	rs2044012	A	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	47918639	rs10460085	A	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	48241665	.	CACTT	C	2192.73	.	AC=2;AF=1.00;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	48326378	rs2586778	G	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	48327815	rs2276186	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	48443987	rs201408498	A	AT	1205.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	48446953	rs674210	C	T	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	48458662	rs649224	G	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	48577782	rs7229678	G	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	48584855	rs57847829	A	AT,ATT	928.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=1.639;SOR=2.038;set=HC	GT:AD:AF:DP	1/2:1,18,28:0.38,0.60:47
chr18	48723217	rs35675106	C	T	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	48991891	rs7241264	G	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	49867224	rs9951523	T	C	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	50432706	rs17389547	A	C	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	50451795	rs72924265	C	T	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	50592640	rs28683803	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	50683691	rs2276147	G	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	50731823	rs2298606	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.77;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	50731829	rs4497763	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.35;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	50831933	rs1431195	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	50994208	rs1502229	G	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	51053176	rs17515923	T	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	51053218	rs113173464	T	TCACCCCAGGC	1490.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	51731308	rs140691	G	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	51904461	rs35286005	C	CTTTA	1029.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	51904498	rs3753057	G	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	52551481	.	C	T	2474.77	.	AC=2;AF=1.00;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	52555398	rs4343367	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	52571434	rs4801109	T	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	52571741	rs4801110	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	52575002	rs1944382	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	52585071	rs138785518	GACACACAC	G	688.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	52605188	rs1344011	C	T	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	52608329	rs8087479	C	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	53131179	.	C	CTG	87.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=17.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	53302845	rs610362	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr18	53303101	rs611326	C	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	53332089	rs796742	C	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	53727502	rs2535724	T	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	54285411	rs676951	G	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	54305564	rs657489	C	T	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	54305757	rs681176	G	A	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	54339818	rs568078	C	G	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	54339977	rs566956	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	54346482	rs683248	T	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	54346510	rs597585	G	A	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	54346745	rs11452823	A	AT	470.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=0.629;SOR=0.412;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr18	54346804	rs525682	T	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	54348514	rs605067	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	54348650	rs474607	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	54353382	rs609195	A	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	54354076	rs5825199	T	TTC	1415.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	54354239	rs576095	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	54361837	rs637823	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	54398922	rs1421262	G	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	55019963	.	T	TCACA	500.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=41.73;ReadPosRankSum=-0.732;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr18	55027212	rs1942964	T	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	55143589	rs618953	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	55218139	rs12957678	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	55221368	rs58628398	GAGGACAC	G	1519.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	55221648	rs536560	T	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	55226254	rs1736440	T	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	55226383	rs536765	G	C	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	55240455	rs577152	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	55240505	rs1041951	C	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	55253710	rs317815	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	55272968	rs4940931	C	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	55283236	rs9319918	T	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	55287739	rs388644	A	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	55288879	rs368935	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr18	55289076	rs2032938	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	55289180	rs2032937	A	G	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	55317676	rs222581	C	T	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	55335366	rs28424873	G	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	55335495	rs317844	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	55335550	rs28473343	A	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	55335786	rs10639378	T	TAAAAAAA	290.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.34;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	55352436	rs319459	G	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	55352470	rs143958246	TTTA	T	977.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	55362532	rs319443	T	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	55362816	rs319442	G	A	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	55364830	rs319439	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	55364852	rs319438	A	G	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	55397512	rs319432	T	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	55397624	rs33964473	GATA	G	2191.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	55397674	rs319433	G	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	55397871	rs319434	T	C	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	55398604	.	TAT	CAC	261	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=2;MGOF=88;MMLQ=18;MQ=60.0;NF=4;NR=2;PP=261;QD=52.411312477;SC=TATATATATATATACACACAC;SbPval=0.65;Source=Platypus;TC=6;TCF=4;TCR=2;TR=6;WE=55398614;WS=55398594;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	55398756	rs651867	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	55862847	rs1008899	G	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	55983330	rs2288774	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	55983364	rs2288775	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	55997929	rs144384654	CTTCT	C	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	56008827	rs4149611	CGTT	C	1762.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	56024396	rs201044327	ATT	A	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.460;QD=18.60;ReadPosRankSum=-2.333;SOR=1.362;set=HC	GT:AD:AF:DP	0/1:10,43:0.81:53
chr18	56037849	rs2075405	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	56040649	rs1943994	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	56118493	rs17669	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	56149099	rs7240666	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	56165064	.	A	G	336.77	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	56165164	rs2277720	G	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	56182174	rs7505023	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	56182507	rs4940399	C	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	56191351	rs7228617	C	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	56196451	rs7236563	C	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	56202059	rs10469211	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	56202418	rs10469212	T	C	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	56202768	rs3809983	C	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	56202982	rs3826594	A	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	56203074	rs3809982	G	A	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	56203120	rs3809981	C	T	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	56203411	rs3809980	G	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	56203447	rs3809979	A	G	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	56203891	rs3809978	G	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.15;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	56203898	rs3809977	T	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	56204250	rs3809976	A	C	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	56204387	rs67925233	ACAGTTGATGTGTCCT	A	3745.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	56204410	rs55910046	C	T	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	56204671	rs4940404	A	T	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	56204747	rs3826593	G	A	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	56204794	rs56390741	C	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	56204794	.	CGT	TGG	666	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=1;HapScore=1;MGOF=22;MMLQ=24;MQ=60.0;NF=19;NR=14;PP=666;QD=21.802056814;SC=TGCTTTTGCACGTAGACACTG;SbPval=0.55;Source=Platypus;TC=33;TCF=19;TCR=14;TR=33;WE=56204804;WS=56204784;set=Platypus	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	56204796	rs34109891	T	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	56204932	rs3809973	T	G	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr18	56204945	rs3809972	C	G	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr18	56204977	rs3809971	C	T	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr18	56204991	rs3809970	C	T	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr18	56205262	rs12103986	A	C	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	56205481	rs9962203	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	56205551	rs9962964	C	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	56245965	.	GAC	G	177.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr18	56274720	.	G	GA	451.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=0.782;QD=13.69;ReadPosRankSum=0.411;SOR=0.252;set=HC	GT:AD:AF:DP	1/1:6,27:0.82:33
chr18	56646583	rs35743757	A	AAAAT	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	56648756	rs61733373	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	56703194	rs9961940	A	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	56711225	rs11152115	A	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	56711284	rs11152116	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	56887507	rs1062557	C	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	57000469	rs2298711	T	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	57014812	.	T	TA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.37;ReadPosRankSum=-1.559;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr18	57106876	rs186790427	A	C	2240.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.384;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.36;ReadPosRankSum=-0.485;SOR=0.532;set=HC	GT:AD:AF:DP	1/1:1,84:0.99:85
chr18	57115203	rs1893788	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	57133862	rs8083041	T	A	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	57134152	rs4940876	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	57136869	rs632899	A	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	57136902	rs663452	C	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	57136943	rs650033	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	57364089	rs3114280	G	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	57638330	rs10871774	G	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	58039276	rs2229616	C	T	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr18	58290330	rs1560400	A	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	58291479	rs9947661	T	C	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	58310604	rs11659206	C	T	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	59157764	rs680530	T	C	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	59158065	rs681902	T	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	59166541	rs12964819	C	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	59166762	rs113925343	T	TAC	62.75	.	AC=1;AF=0.500;AN=2;DB;DP=5;MQ=58.85;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr18	59170304	rs595093	C	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	59174817	rs1547956	C	A	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	59206197	rs5825446	C	CT	767.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	59206480	rs11875000	C	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	59212511	rs5825448	AT	A	35.76	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr18	59739962	.	TA	T	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.792;QD=3.27;ReadPosRankSum=0.379;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr18	59805532	rs9959632	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	60036083	rs8092336	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	60191428	rs7229802	G	A	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	60206800	rs55722786	G	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	60209709	rs17729940	C	G	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	60230191	rs17668713	G	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	60231851	rs12956093	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	60232383	rs57164502	ATACT	A	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	60232405	rs4940561	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.58;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	60241197	rs12965012	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	60612536	rs525092	T	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	60630531	rs547690	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	60985879	rs1801018	T	C	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr18	61022634	rs1809319	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	61022791	rs2003149	C	T	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	61034175	rs427065	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.76;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	61060873	rs898890	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	61066463	rs2276317	A	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	61067959	rs952245	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	61078888	rs11383277	G	GT	350.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr18	61154043	rs34587228	T	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	61154388	rs2271254	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	61156606	rs12454742	G	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	61160287	rs2289519	T	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	61160385	rs2289521	T	C	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	61166269	rs56208842	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	61166273	rs12458191	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.04;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	61166280	.	G	GTATATA	657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.32;ReadPosRankSum=2.292;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr18	61170467	rs1840557	G	A	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	61170500	rs1455557	T	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	61170721	rs1455556	T	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	61170782	rs1455555	A	G	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	61170925	rs8093128	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	61225801	rs7244584	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	61226694	rs11152391	G	A	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	61226740	rs12103954	G	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	61228248	rs9676250	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	61231144	.	AAAAT	A	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=0.495;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr18	61231417	rs9957786	A	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	61233739	rs2077549	T	C	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	61254525	rs3216123	A	AT	1340.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	61256117	rs77936810	GC	G	262.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	61261515	rs11152394	T	C	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	61261540	rs11152395	T	C	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	61261565	rs11152396	C	G	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	61264298	rs1020694	G	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	61264468	rs1020693	C	T	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr18	61271065	rs7229459	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	61308895	rs2518061	A	G	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	61325905	rs7228687	T	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	61326505	rs8089032	T	A	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	61326597	rs8085479	A	C	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.26;QD=44.67;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	61326602	rs8085482	A	G	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.26;QD=45.63;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	61326609	rs8089201	T	G	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=43.03;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr18	61326628	rs11370831	A	AT	3421.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	61377579	rs1395268	A	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	61387993	rs12607732	T	C	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	61390316	rs1395265	C	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	61390332	rs1395266	C	T	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	61390361	rs1395267	T	C	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	61390570	rs953695	T	G	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	61390649	rs953696	C	T	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	61391228	rs2089318	T	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	61391323	rs147160513	CTCT	C	1040.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	61391449	rs144614464	C	CTCTTCT	363.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	61391505	rs144622175	CTCT	C	1318.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.80;QD=38.79;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	61391697	rs12326861	A	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	61393442	rs9965604	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	61393644	rs1893563	T	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	61394300	rs8097334	C	T	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	61394403	rs8098025	A	G	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	61394522	rs6567386	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	61584726	rs143009235	G	T	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	61654463	rs3826616	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	61766039	rs2613658	C	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	63477317	rs11332924	GA	G	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-0.642;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr18	63489378	rs8097752	C	T	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	63511410	rs145270355	G	GATTTATATATATAT	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	63530016	rs2291343	A	G	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	64748928	rs11423865	C	CT	886.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr18	65179829	rs2279269	G	A	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	66504093	rs485613	A	C	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	66504351	rs637051	G	A	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	66504459	rs572020	A	T	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	66511027	rs9962597	C	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	66511207	rs33926572	TA	T	168.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	66513235	rs12959654	G	A	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	66513256	rs8088575	A	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	66513471	rs1954878	C	G	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	66513662	rs1977942	T	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	66513749	rs1970675	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	66513840	rs1970674	C	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	66678131	rs7234663	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	66678453	rs930164	A	G	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	67068605	rs33984456	TG	T	1651.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr18	67345034	rs8099030	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	67365585	rs4581806	A	G	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	67365668	rs4426448	A	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	67531642	rs763361	T	C	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	67563309	rs1630425	A	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr18	67563348	rs1788115	T	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	67613926	rs10782036	A	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	67614674	rs3214811	T	TA	344.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	67718688	rs4891392	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	67724802	rs12968602	A	G	215.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	67726975	rs11876398	A	G	115.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	67727003	rs1435086	A	T	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	67733234	rs11151561	T	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	67741117	rs1369292	G	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	67741309	rs1369293	G	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	67742801	rs285228	G	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	67759549	rs4891394	C	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	67809647	rs11665653	A	C	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.03;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr18	67812773	rs11662011	G	A	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	67817744	rs12606964	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	67818046	rs12604751	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	67860719	rs283250	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	67863850	rs74941514	T	TCTC	1765.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	67871343	rs3911730	A	C	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	70209321	rs7237888	C	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	70416367	rs35742923	C	CA	597.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	70417396	rs922999	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	70532840	rs10164255	T	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	70532977	rs10163845	A	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	70534401	rs6566677	G	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	71749359	rs12962744	G	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	71920966	rs1790871	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	71930734	rs2032262	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	71930758	rs2032263	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	71930834	rs144732931	C	CTG	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	71930844	rs2032264	C	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	71989909	rs10164170	T	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	71990033	rs10163785	G	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	71996377	rs1541292	G	A	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	72020475	rs8093010	T	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	72021548	rs12608084	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	72021717	rs12606060	T	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	72109174	rs1559805	C	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	72113730	rs3861310	A	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	72114455	rs8087020	C	T	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	72183695	rs2241509	T	A	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	72186059	rs733062	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	72223591	rs10663835	G	GTGC	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:5,58:0.92:63
chr18	72226455	rs12605490	A	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	72226539	rs12607796	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	72226809	rs7239132	C	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	72228124	rs4263028	A	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	72228269	rs4329999	G	A	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	72238283	rs4892244	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	72245660	rs141377822	A	AG	1771.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	72264639	rs28476707	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	72342869	rs3794944	T	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	72343008	rs7243081	T	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	72347482	rs12327359	T	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	72493314	rs7228438	G	T	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	72515950	rs143651062	G	A	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	72593118	rs2628126	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	72776121	rs3744913	G	A	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	74082584	rs9676093	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	74082655	rs690035	G	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	74090957	rs56087742	CG	C	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	74092366	rs12970367	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	74208485	rs3841258	CG	C	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	74208573	rs4891164	G	A	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	74536101	rs3764473	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	74591992	rs5826483	G	GT	175.52	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr18	74611127	rs608433	A	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	74622529	rs684192	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	74627577	rs537945	C	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	74648107	rs34003753	CGT	C	1637.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	74648536	rs630229	G	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	74671768	rs470403	T	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	74680114	rs17575711	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	74680208	rs73968242	C	T	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	74680259	rs657066	C	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	74680369	rs470774	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	74701984	rs470797	G	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.46;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	74702113	rs35688328	A	AT	80.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.99;ReadPosRankSum=0.140;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr18	74721697	rs3752070	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	74779614	rs4890887	C	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	74779866	rs4890888	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	74962447	rs13306375	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	74962645	rs5374	T	C	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	74980809	rs5376	G	A	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr18	76753588	rs7240860	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr18	76753768	rs2447437	C	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr18	76754466	rs2472644	C	T	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	77013286	.	G	GT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=1.120;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr18	77067000	rs3760541	T	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	77107934	rs9965202	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	77108248	rs148971054	GAAAAA	G	1455.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.39;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	77108254	rs201867566	A	G	792.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=0.927;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr18	77137202	rs1110784	A	G	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	77156103	rs71359461	G	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	77156449	rs58346397	G	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	77160235	rs56376587	A	C	161.88	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=17.99;ReadPosRankSum=0.967;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr18	77160256	.	G	GGGGGGC	457.73	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	77160367	.	C	CGCCCCG	2303.73	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=45.17;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	77210902	rs680802	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	77227391	.	C	T	524.77	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	77227678	rs56196496	G	A	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	77246766	.	G	A	5238.77	.	AC=2;AF=1.00;AN=2;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr18	77287385	rs451691	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	77402305	rs56014953	C	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	77420703	rs868678	C	G	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	77513721	rs626169	T	C	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	77623954	.	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.812;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr18	77694128	rs202000055	TAA	T,TA	1133.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=0.037;SOR=0.741;set=HC	GT:AD:AF:DP	1/2:3,32,20:0.58,0.36:55
chr18	77703299	rs8095510	C	T	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	77703476	rs2277723	A	G	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	77710618	rs72984244	C	T	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	77710980	rs2012676	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	77724637	rs75395155	C	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	77726544	rs149080363	GA	G	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.609;QD=11.17;ReadPosRankSum=0.028;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr18	77728045	rs2298644	C	T	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	77728135	rs2298645	G	T	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	77736735	rs4799116	T	C	7421.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr18	77737714	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=2.037;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr18	77796574	rs12957601	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	77797321	rs748337	C	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	77798449	rs71986344	TTGTC	T	795.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.40;QD=39.79;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	77798461	rs3744870	C	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=41.40;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	77802297	rs66538525	C	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	77805715	rs3744871	G	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	107456	.	T	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.09;MQRankSum=-0.246;QD=3.47;ReadPosRankSum=-0.415;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	281468	rs34708574	G	A	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr19	282753	rs1138439	G	A	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:81,75:0.48:156
chr19	287970	.	G	GT	183	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=21;MQ=60.23;NF=3;NR=5;PP=183;QD=30.8557200589;SC=GGGTAAAGCTGGCCCCACCCC;SbPval=0.65;Source=Platypus;TC=31;TCF=12;TCR=19;TR=8;WE=287978;WS=287960;set=Platypus	GT:AD:AF:DP	0/1:23,8:0.26:31
chr19	290947	rs8111051	C	A	215.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.96;ReadPosRankSum=2.672;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	307345	rs34129568	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:62,48:0.44:110
chr19	309012	rs139315873	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr19	312020	rs8104600	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:228,67:0.23:295
chr19	312143	rs10416918	T	C	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	313450	rs149676148	G	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr19	326481	rs4897949	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr19	327998	rs2305113	G	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr19	335946	rs3816322	G	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	367313	rs585487	G	A	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr19	371369	rs372771292	GGT	G	2144.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.300;QD=36.35;ReadPosRankSum=0.667;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:4,55:0.93:59
chr19	371396	rs644644	G	C	2558.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.459;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.263;QD=38.19;ReadPosRankSum=0.907;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:1,66:0.99:67
chr19	372551	rs652081	A	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	372737	rs2303811	T	C	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr19	372775	rs2303812	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr19	373897	rs668447	G	C	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:103,102:0.50:205
chr19	374016	rs2303815	G	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:157,118:0.43:275
chr19	374492	rs10410345	G	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	374547	rs648770	T	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=-0.824;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr19	407900	rs10411998	A	G	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr19	418769	rs12981152	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=0.575;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr19	418786	rs1115033	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr19	422534	rs12984753	G	A	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.160;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=0.761;SOR=1.495;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr19	422543	rs2287958	G	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=0.458;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr19	422555	rs2287957	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr19	425182	rs61735134	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr19	425305	rs62102119	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	439055	rs112380345	G	A	1746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=1.999;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:85,82:0.49:167
chr19	460475	rs12980271	G	C	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	460668	rs189741717	C	G	129.85	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.64;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	460883	rs182361580	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	463810	rs60512152	GC	G	339.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	464310	rs34551779	A	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr19	496652	rs114840310	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.728;QD=8.85;ReadPosRankSum=-1.030;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	498212	rs12461640	A	C	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	498524	rs2302217	A	G	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:171,199:0.54:370
chr19	499425	rs34283757	GACAC	G	4796.73	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:149,128:0.46:277
chr19	501695	.	CC	TC	1933	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=1.0000,0.5000;HP=1;HapScore=1;MGOF=33;MMLQ=12;MQ=56.51;NF=5,19;NR=9,15;PP=1933,305;QD=139.857142857;SC=CTCCCCGGAGCCTCCCGACAC;SbPval=0.34;Source=Platypus;TC=88;TCF=24;TCR=64;TR=14,34;WE=501727;WS=501685;set=Platypus	GT:AD:AF:DP	0/1:69,34:0.33:103
chr19	501695	.	CC	CCTCCCGACACCACCTCCCCGGAGTC	1933	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=1.0000,0.5000;HP=1;HapScore=1;MGOF=33;MMLQ=12;MQ=56.51;NF=5,19;NR=9,15;PP=1933,305;QD=139.857142857;SC=CTCCCCGGAGCCTCCCGACAC;SbPval=0.34;Source=Platypus;TC=88;TCF=24;TCR=64;TR=14,34;WE=501727;WS=501685;set=Platypus	GT:AD:AF:DP	0/1:74,14:0.16:88
chr19	501701	.	G	GACACCACCTCCCCGGAGCCTCCCA	1942.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.500;MQ=64.85;MQRankSum=7.894;QD=21.83;ReadPosRankSum=0.473;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:42,47:0.53:89
chr19	501743	.	T	TCTCCCGACACCACCTCCCAGGAGCCTCCCGACACCACCTCCCAGGAGC	5732.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.32;MQRankSum=-1.475;QD=92.46;ReadPosRankSum=-0.363;SOR=0.456;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr19	504830	rs7246543	C	G	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:93,81:0.47:174
chr19	505071	rs1140823	T	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	507450	rs7246920	G	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr19	519336	rs112370786	G	A	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	536088	.	C	T	703	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=1;MGOF=47;MMLQ=24;MQ=58.34;NF=35;NR=11;PP=703;QD=16.0385046206;SC=TTCCGGGACCCGAGGCGCTGG;SbPval=0.99;Source=Platypus;TC=137;TCF=72;TCR=65;TR=46;WE=536098;WS=536076;set=Platypus	GT:AD:AF:DP	0/1:91,46:0.34:137
chr19	536088	.	C	CGGGGCGCTGGGAGCCTCACATCCTCGTCCTTCCGGGACCT	2390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=23.323;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-1.458;QD=28.13;ReadPosRankSum=-1.297;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chr19	541685	rs7150	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	544277	rs12981692	C	G	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.433;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	544315	rs3760874	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	547224	rs4919846	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	547491	rs2070795	C	T	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	548865	rs12972174	C	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	549595	rs1599883	T	C	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	549678	rs1599882	A	G	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	578239	rs2283571	C	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr19	579010	rs7253615	G	A	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr19	579035	rs2283572	C	T	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:46,66:0.59:112
chr19	580163	rs5826703	GA	G	794.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr19	580268	rs2108832	G	C	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:101,87:0.46:188
chr19	580333	rs11879069	G	A	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:120,119:0.50:239
chr19	580665	rs4682	T	C	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:115,129:0.53:244
chr19	580793	rs10416339	A	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:73,76:0.51:149
chr19	580810	rs10422916	TG	CA	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;JOINED;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr19	580887	rs28992478	C	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	581190	rs149750330	TCCCGGACTCAGCCC	T	1022.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr19	582253	rs4919862	T	C	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	582468	rs2074962	A	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr19	582505	rs2072309	G	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr19	582775	rs8637	A	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr19	582927	rs8259	T	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:67,86:0.56:153
chr19	590172	rs113534512	G	A	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	603513	rs4919815	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:56,35:0.38:91
chr19	604022	rs10409268	A	G	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-1.844;QD=14.58;ReadPosRankSum=-1.246;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr19	605171	rs12981860	T	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	613091	rs114094185	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	613560	rs149420100	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=2.291;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	613898	rs1054786	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr19	615770	rs56037529	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr19	616057	rs201222040	G	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	617205	rs2072122	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr19	617924	rs41563414	G	C	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr19	619021	rs14155	G	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	619408	rs10853989	A	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	619574	rs10853990	T	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr19	619772	rs11669381	G	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr19	621020	rs111437074	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	621561	rs10421235	C	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.25;ReadPosRankSum=-0.623;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	621712	rs2238547	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;MQ=57.34;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	622000	rs2238548	C	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=0.728;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	622336	rs2238549	T	G	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-2.009;QD=15.44;ReadPosRankSum=-0.595;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,34:0.72:47
chr19	624919	rs2285854	G	A	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:128,124:0.49:252
chr19	625198	rs1056766	A	G	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:83,96:0.54:179
chr19	629438	rs2283576	G	C	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	629503	rs2283577	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	629846	rs11550305	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr19	633013	rs56090114	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.107;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr19	633381	rs11669858	A	G	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	633529	.	G	GGCGCCGCCGCCGCCGCCGCC,GGCGCCGCCGCCGCCGCCGCCGCC	5802.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=157;set=Intersection	GT:AF:DP	1/2:0.52,0.48:111
chr19	633618	rs9304925	C	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr19	641215	rs7246140	T	C	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	643104	.	G	GGAGGGGACTCGTGGTCTGGGGCAGGGGGGGCTCCTCGTGTCTGTCGTGGTCAT	1056.73	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=176.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	646891	rs10403235	G	A	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	647039	rs2074460	T	C	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	649110	rs2040736	G	C	145.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	652206	rs8102953	G	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	652739	rs12973146	C	G	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	652948	rs10153505	T	G	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	687142	rs8102982	G	A	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	691909	rs4375794	T	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	725939	rs3787017	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr19	726910	rs28452452	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	727225	.	C	CAACCCT	1789.73	.	AC=2;AF=1.00;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	727237	.	C	CGACCCT	1788.73	.	AC=2;AF=1.00;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	727261	.	CAACCT	C	2356	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=3;HapScore=1;MGOF=76;MMLQ=24;MQ=52.96;NF=2;NR=42;PP=2356;QD=54.0681818182;SC=ACCCTGACCCCAACCTGACCC;SbPval=0.99;Source=Platypus;TC=71;TCF=11;TCR=60;TR=44;WE=727273;WS=727251;set=Platypus	GT:AD:AF:DP	0/1:27,44:0.62:71
chr19	727544	rs3746168	C	G	9675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=-0.778;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:292,262:0.47:554
chr19	727550	rs3746169	T	C	9356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.69;ReadPosRankSum=0.256;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:286,243:0.46:529
chr19	727552	rs3746170	C	T	9300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.89;ReadPosRankSum=0.437;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:283,237:0.46:520
chr19	731055	rs10405821	G	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr19	731077	rs10405836	GG	CT	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;JOINED;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr19	731144	rs1050457	A	G	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,85:0.63:135
chr19	740272	rs7245884	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:95,86:0.48:181
chr19	740560	rs10419493	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	746206	rs2384776	C	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	808014	rs138299582	C	T	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:103,151:0.59:254
chr19	830621	rs653847	A	C	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:67,91:0.58:158
chr19	830854	rs595844	T	C	8450.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:352,407:0.54:759
chr19	840984	rs2074639	C	T	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=7.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.681;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:55,60:0.52:115
chr19	841100	rs62132296	C	T	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=0.086;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:47,57:0.55:104
chr19	843692	rs2301879	A	G	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,62:0.58:107
chr19	844020	rs351111	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,64:0.48:132
chr19	844077	rs351112	A	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr19	855966	rs17216649	C	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:42,66:0.61:108
chr19	859831	rs8107095	T	G	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr19	860852	rs1629038	G	C	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	861102	rs1626564	C	A	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr19	861593	rs1683563	C	G	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	863388	rs1135146	C	G	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr19	871033	rs72984029	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.756;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.552;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr19	871222	rs8100258	G	A	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.490;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:38,49:0.56:87
chr19	871447	rs1683570	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr19	872089	rs72984031	A	G	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:139,111:0.44:250
chr19	885818	rs1060442	A	G	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:150,99:0.40:249
chr19	899567	rs2930885	C	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:92,77:0.46:169
chr19	900789	.	A	G	183	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=26;MQ=58.38;NF=1;NR=3;PP=183;QD=54.4428031368;SC=CCCCATCCATACCCTGGCCCC;SbPval=0.8;Source=Platypus;TC=9;TCF=3;TCR=6;TR=4;WE=900797;WS=900779;set=Platypus	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	901955	rs4343405	C	T	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:94,144:0.61:238
chr19	913044	rs199619192	G	GC	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	913048	rs1683587	G	C	219.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.41;ReadPosRankSum=0.887;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr19	920170	rs350131	G	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	920642	rs350132	T	A	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	929678	rs3826948	G	A	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr19	929753	rs1799595	A	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	960187	rs1637993	G	C	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	960266	rs1683584	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr19	964434	rs2240615	G	A	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=1.221;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:34,37:0.52:71
chr19	965043	rs12608658	T	C	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	966458	rs71335324	CA	C	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.934;QD=5.02;ReadPosRankSum=-0.246;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	966693	rs6510986	C	T	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,83:0.55:150
chr19	968318	rs8105235	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	968345	rs7251219	CA	TG	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.529;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.48;ReadPosRankSum=1.782;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr19	971933	rs1051504	A	G	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=2.757;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:91,66:0.42:157
chr19	971949	rs1051505	G	A	2837.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:89,83:0.48:172
chr19	984218	rs8112598	C	T	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	984231	rs34402804	G	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	984533	rs2301810	T	C	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	984554	rs4806884	C	G	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	984578	rs2301811	T	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	985815	rs2074573	T	G	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	985997	rs2074574	C	G	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	990185	rs10409367	G	C	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	990281	rs2158367	G	A	7958.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr19	990394	rs2240148	T	C	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	990819	rs2240149	G	A	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	991196	rs60416441	CGTCCCAG	CCCCAG,C	8554.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=193;set=Intersection	GT:AF:DP	1/1:1.00:190
chr19	991199	rs201372013	CCCAGG	C	8556.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	991204	.	G	C	2823	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=1;HapScore=1;MGOF=4;MMLQ=26;MQ=60.0;NF=74;NR=69;PP=2823;QD=20;SC=CACGTCCCAGGTGACCCCTGT;SbPval=0.54;Source=Platypus;TC=157;TCF=81;TCR=76;TR=143;WE=991212;WS=991186;set=Platypus	GT:AD:AF:DP	1/1:14,143:0.91:157
chr19	991873	rs71335284	G	T	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	991892	rs71335285	T	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	1000420	rs112743753	A	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	1000568	rs112236900	C	A	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	1000785	rs12986002	C	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	1000799	rs2301813	G	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	1003172	rs2240154	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr19	1003808	rs2240155	A	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr19	1003857	rs4806904	G	A	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.422;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.429;QD=17.58;ReadPosRankSum=2.810;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr19	1003860	rs2240156	C	T	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=2.720;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr19	1004710	rs4807399	C	T	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:186,140:0.43:326
chr19	1004724	rs11880849	A	G	6010.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:207,157:0.43:364
chr19	1004740	rs2240157	T	C	6105.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:219,174:0.44:393
chr19	1004823	rs4806908	G	A	6620.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:268,196:0.42:464
chr19	1004844	rs4806909	T	C	6712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.623;QD=14.25;ReadPosRankSum=-1.790;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:267,204:0.43:471
chr19	1004896	rs10666583	G	GCGTT	7297.73	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:238,188:0.44:426
chr19	1005230	rs2240158	C	T	5017.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:255,233:0.48:488
chr19	1005531	rs12973948	G	C	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:143,102:0.42:245
chr19	1005598	rs11671828	T	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr19	1008118	rs181358444	C	T	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:145,107:0.42:252
chr19	1008358	rs10403909	A	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr19	1011215	rs2240160	G	A	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	1031212	rs7247087	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:69,60:0.47:129
chr19	1032369	rs10401325	C	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	1032689	rs1141534	G	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.240;QD=7.24;ReadPosRankSum=-1.244;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr19	1032778	rs143549322	TTC	T	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	1032871	rs4630683	A	G	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	1036018	rs930232	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=1.015;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:46,36:0.44:82
chr19	1036444	rs930231	G	A	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:122,127:0.51:249
chr19	1036552	rs2304262	T	C	24889.77	.	AC=2;AF=1.00;AN=2;DB;DP=928;set=Intersection	GT:AD:AF:DP	1/1:2,923:1.00:925
chr19	1037640	rs200303627	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.09;MQRankSum=-1.643;QD=4.98;ReadPosRankSum=-1.106;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr19	1037645	rs371146424	AC	A	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.91;MQRankSum=0.105;QD=4.61;ReadPosRankSum=-1.033;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	1037670	rs199840457	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=48.94;MQRankSum=0.104;QD=12.92;ReadPosRankSum=-1.097;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	1037679	rs200505828	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.81;MQRankSum=-0.717;QD=12.11;ReadPosRankSum=-0.657;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	1037681	rs200699249	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.81;MQRankSum=-0.717;QD=12.11;ReadPosRankSum=-1.425;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	1037715	rs200177867	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=50.91;MQRankSum=-1.801;QD=14.84;ReadPosRankSum=0.573;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	1037716	rs201532581	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=50.91;MQRankSum=-1.801;QD=14.84;ReadPosRankSum=0.193;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	1037718	rs199741851	G	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.699;MLEAC=1;MLEAF=0.500;MQ=50.65;MQRankSum=-2.137;QD=15.84;ReadPosRankSum=-0.769;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	1037731	rs75808449	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	1037749	rs77454210	G	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.627;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.81;MQRankSum=-2.372;QD=13.56;ReadPosRankSum=0.288;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr19	1037756	rs77830704	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.911;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.05;MQRankSum=-2.430;QD=11.54;ReadPosRankSum=0.529;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	1037766	rs78386506	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.56;MQRankSum=-2.311;QD=12.62;ReadPosRankSum=0.277;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	1037781	rs75676484	C	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.00;MQRankSum=-2.139;QD=9.76;ReadPosRankSum=0.806;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr19	1037791	rs75577125	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-2.236;QD=8.57;ReadPosRankSum=1.144;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr19	1037801	rs78797154	A	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.884;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-3.737;QD=6.67;ReadPosRankSum=2.070;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	1037807	rs78288829	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-3.644;QD=7.07;ReadPosRankSum=1.534;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr19	1037810	rs80117328	G	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-3.644;QD=7.07;ReadPosRankSum=1.234;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr19	1037812	rs79770201	T	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-4.004;QD=7.38;ReadPosRankSum=1.827;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	1037828	rs75602230	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-3.878;QD=3.60;ReadPosRankSum=1.258;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr19	1037833	rs80286396	C	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-4.069;QD=3.07;ReadPosRankSum=0.927;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr19	1037842	rs79061930	G	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-3.975;QD=3.20;ReadPosRankSum=-0.310;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr19	1037844	rs74612849	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-3.975;QD=3.32;ReadPosRankSum=-0.349;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr19	1037848	rs76751843	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-3.975;QD=3.32;ReadPosRankSum=-0.582;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr19	1037856	rs76549406	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-3.878;QD=3.60;ReadPosRankSum=-1.341;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr19	1037869	rs75014171	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-3.352;QD=4.44;ReadPosRankSum=-1.752;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr19	1037871	rs78251590	C	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-2.556;QD=2.75;ReadPosRankSum=-1.721;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:15,2:0.12:17
chr19	1037932	rs3848639	G	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	1041352	rs3752229	A	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:114,103:0.47:217
chr19	1042809	rs3764645	A	G	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=5.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.664;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:65,39:0.38:104
chr19	1043103	rs72973581	G	A	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:89,68:0.43:157
chr19	1043638	rs3752231	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr19	1043864	rs4622634	G	C	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-1.163;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:52,59:0.53:111
chr19	1044753	rs3764648	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	1046748	rs142547735	A	AG	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	1047002	rs3752234	A	G	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	1047078	rs4147910	A	G	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:80,100:0.56:180
chr19	1047161	rs3752237	A	G	8416.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr19	1047687	rs4147911	C	G	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=1.252;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	1049012	rs4147912	A	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	1049269	rs4147914	G	A	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.407;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-1.725;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:62,85:0.58:147
chr19	1049471	.	C	CCA	772.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.917;QD=29.72;ReadPosRankSum=1.801;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr19	1049480	rs75864702	A	T	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.828;QD=29.57;ReadPosRankSum=1.571;SOR=2.124;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr19	1049490	rs79814850	C	G	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.42;ReadPosRankSum=1.037;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr19	1050781	.	A	AAAT	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.086;QD=24.36;ReadPosRankSum=-0.127;SOR=2.457;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	1050836	rs55999131	T	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=8.838;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=-0.706;QD=5.97;ReadPosRankSum=0.689;SOR=2.572;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr19	1050874	rs12151021	A	G	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,40:0.39:102
chr19	1051214	rs3752240	A	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,57:0.53:108
chr19	1051370	.	TACTGAGGTCCACGTGGGTAGGCAACCTTGCCCAAGGCTGGGTGTGACAC	T	2954	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=2;NR=3;PP=2954;QD=20;SC=GGAAGCCGGGTACTGAGGTCC;SbPval=0.54;Source=Platypus;TC=15;TCF=5;TCR=10;TR=5;WE=1051426;WS=1051360;set=Platypus	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	1056492	rs3752246	G	C	4442.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:345,220:0.39:565
chr19	1057776	rs113768208	G	GA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.224;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr19	1062370	rs34606911	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr19	1063930	rs4807499	C	T	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.689;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:36,47:0.57:83
chr19	1064193	rs4147930	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr19	1064453	rs4147931	G	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	1065018	rs4147934	G	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr19	1065044	rs4147935	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr19	1065197	rs4147936	G	C	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr19	1066256	rs4147938	G	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=0.745;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	1066288	.	T	G	20	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=5;HapScore=2;MGOF=17;MMLQ=22;MQ=60.0;NF=0;NR=5;PP=20;QD=10.9542425094;SC=GGGTGGGGGTTGGGGGAAGGT;SbPval=1.0;Source=Platypus;TC=17;TCF=5;TCR=12;TR=5;WE=1066296;WS=1066278;set=Platypus	GT:AD:AF:DP	1/0:12,5:0.29:17
chr19	1068808	rs75181293	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr19	1068873	rs61242726	G	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr19	1071312	rs4807506	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr19	1073409	rs2074441	C	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr19	1074000	rs2074442	A	T	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=1.329;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:43,30:0.41:73
chr19	1074064	rs12610818	C	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	1074252	rs11084881	T	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:96,86:0.47:182
chr19	1080189	rs2074453	G	C	4696.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:359,249:0.41:608
chr19	1080311	rs2074454	G	C	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:259,214:0.45:473
chr19	1081120	rs8113708	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	1081462	rs34275968	C	CG	720.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr19	1081617	rs10404947	A	G	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	1085508	.	CT	C	351	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=1;MGOF=34;MMLQ=24;MQ=58.66;NF=23;NR=10;PP=351;QD=11.303030303;SC=CTTGTCTCTCCTCCATCTCTC;SbPval=0.36;Source=Platypus;TC=54;TCF=40;TCR=14;TR=33;WE=1085516;WS=1085499;set=Platypus	GT:AD:AF:DP	1/0:21,33:0.61:54
chr19	1085509	.	T	TCCATCTCTCCTGTCTCTCC	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=1.053;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr19	1085528	rs147365366	C	CT	863.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr19	1085966	rs3761028	A	G	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	1086043	rs3761026	T	C	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr19	1090020	rs61585798	TG	T	657.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	1090803	rs3787016	A	G	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	1094004	rs12459404	G	A	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	1095151	rs10416031	A	G	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	1095336	rs1046041	C	T	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr19	1104078	rs4807542	G	A	311.88	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr19	1105621	rs8178973	A	AG	1648.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr19	1106477	rs8178977	G	C	4803.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:179,222:0.55:401
chr19	1106615	rs713041	T	C	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:111,140:0.56:251
chr19	1109213	rs2159133	A	G	4777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=-1.106;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:126,126:0.50:252
chr19	1109213	.	AGG	GGA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=63;NR=39;PP=2944;QD=20;SC=GCGGTGACCTAGGGACACAGG;SbPval=0.63;Source=Platypus;TC=222;TCF=133;TCR=89;TR=102;WE=1109223;WS=1109203;set=Platypus	GT:AD:AF:DP	0/1:120,102:0.46:222
chr19	1109215	rs11669443	G	A	4777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.353;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.19;ReadPosRankSum=-0.471;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:127,122:0.49:249
chr19	1110829	rs2302109	G	A	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:185,268:0.59:453
chr19	1115782	rs2072281	G	A	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=0.700;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:43,36:0.46:79
chr19	1115789	rs2072282	A	G	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.702;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:49,39:0.44:88
chr19	1116935	rs7251039	G	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:98,93:0.49:191
chr19	1117007	rs8112247	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr19	1119019	rs2074920	C	T	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:94,105:0.53:199
chr19	1119630	.	G	A	3041.77	.	AC=1;AF=0.500;AN=2;DP=290;set=Intersection	GT:AD:AF:DP	0/1:144,143:0.50:287
chr19	1119699	rs7249751	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:66,80:0.55:146
chr19	1119876	rs8107205	T	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr19	1119963	rs2074921	A	G	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:115,123:0.52:238
chr19	1120101	rs2074922	C	G	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:77,78:0.50:155
chr19	1122147	rs2072280	G	A	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:102,128:0.56:230
chr19	1124053	rs2024093	A	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr19	1127615	rs2074915	G	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr19	1127720	rs2074916	G	A	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:61,69:0.53:130
chr19	1128312	rs10412207	A	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,54:0.58:93
chr19	1128323	rs143649184	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr19	1149339	rs76603488	G	A	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr19	1268178	rs12975875	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	1270231	rs56378951	GC	G	2971.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:4,109:0.96:113
chr19	1271274	rs12609287	C	T	8327.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr19	1271529	rs4807050	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	1272040	rs12488	T	C	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	1274539	rs8108009	T	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	1277275	rs757292	G	C	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	1354983	rs10555657	AGCG	A	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.53;ReadPosRankSum=-0.905;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	1357082	rs713042	T	C	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:58,85:0.59:143
chr19	1360082	rs8109377	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:68,62:0.48:130
chr19	1360575	rs3826942	G	A	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:92,116:0.56:208
chr19	1364139	rs10570720	ACACT	A	6287.73	.	AC=1;AF=0.500;AN=2;DB;DP=339;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:165,165:0.50:330
chr19	1366422	rs2668418	C	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr19	1367226	rs11668809	G	A	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:85,100:0.54:185
chr19	1371354	rs2668424	T	C	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:92,113:0.55:205
chr19	1388538	rs1142530	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr19	1389064	rs7258846	G	T	5705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-1.520;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:210,263:0.56:473
chr19	1389324	rs66919466	ACT	A	2555.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:114,118:0.51:232
chr19	1389517	rs11666067	C	A	3751.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:180,183:0.50:363
chr19	1399056	rs55776826	C	T	4455.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:173,212:0.55:385
chr19	1407618	.	A	AGCC	130.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	1453705	rs12985827	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr19	1455933	rs146334923	C	CAGAGTCAGAGCCCAGGGCGAAGTCATCCCAGGA	656.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr19	1456544	rs2656869	A	G	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	1456730	rs3896893	G	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	1457894	.	C	CGGGGGGGGGG	255	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=4;HapScore=1;MGOF=6;MMLQ=24;MQ=59.89;NF=2;NR=0;PP=255;QD=140.5;SC=GGGCGGGTTGCGGGACCTTCG;SbPval=1.0;Source=Platypus;TC=13;TCF=9;TCR=4;TR=2;WE=1457902;WS=1457884;set=Platypus	GT:AD:AF:DP	0/1:11,2:0.15:13
chr19	1467684	rs265273	A	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr19	1488147	rs4807120	C	T	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:168,123:0.42:291
chr19	1506710	rs3215149	TC	T	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr19	1507483	rs791460	T	C	3087.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:215,155:0.42:370
chr19	1507535	rs791461	T	C	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:127,90:0.41:217
chr19	1507710	.	T	G	1007.77	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,49:0.41:120
chr19	1508737	rs55810939	C	T	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr19	1508757	rs56135389	G	C	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr19	1510661	rs265291	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr19	1529550	rs2656863	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr19	1534154	.	GA	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.268;QD=3.03;ReadPosRankSum=0.088;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	1575410	.	T	TA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.578;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr19	1605501	rs58213078	CG	C	42	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.000;QD=8.40;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr19	1619333	rs1140828	G	A	1223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.85;ReadPosRankSum=-0.562;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:24,32:0.57:56
chr19	1619339	rs8140	T	C	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.77;ReadPosRankSum=-1.980;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:22,31:0.58:53
chr19	1619348	rs1052696	G	A	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.36;ReadPosRankSum=-1.817;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	1619350	rs1052692	C	T	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.52;ReadPosRankSum=-1.769;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	1619749	rs10648013	A	AGGGTG	101.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	1624007	rs55677929	A	G	2973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=1.670;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:138,144:0.51:282
chr19	1625811	rs11084904	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr19	1650134	rs1860661	A	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=13.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-1.012;SOR=2.431;set=HC	GT:AD:AF:DP	0/1:32,26:0.45:58
chr19	1775123	rs79565776	T	TCGCC	278.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr19	1783261	rs2385387	C	T	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	1784890	rs3764605	A	G	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	1784944	rs3764606	A	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	1785772	rs8110462	T	C	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	1802129	rs79891569	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.98;ReadPosRankSum=-0.674;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	1806210	rs7252063	A	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	1809479	.	CA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=1.549;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr19	1809598	rs9941464	C	T	2362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=4.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.262;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:113,120:0.52:233
chr19	1809836	rs8107742	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	1810605	rs716993	T	C	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	1811547	rs12609187	A	G	10665.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr19	1811603	rs7250872	C	T	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:229,221:0.49:450
chr19	1817113	rs12976128	A	C	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-0.426;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr19	1817134	.	C	CCCAGATGGGG	2173.73	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	1817866	rs2304612	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr19	1818459	rs1610106	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	1818952	rs893538	C	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	1819125	rs2396359	T	C	2322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-0.019;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:130,118:0.48:248
chr19	1819234	rs113598561	ACT	A	1112.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	1821637	rs4807145	A	G	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	1825662	rs12985599	A	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	1825786	rs59277540	T	TA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-1.741;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr19	1825927	rs149465929	TCTC	T	2101.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:71,58:0.45:129
chr19	1848243	rs12984809	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	1854557	rs3746045	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr19	1863587	.	C	CGGA	75	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=4;HapScore=2;MGOF=23;MMLQ=24;MQ=57.57;NF=0;NR=2;PP=75;QD=43.5;SC=GTGCGGGAGGCGGAGGAGGAG;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=1863595;WS=1863577;set=Platypus	GT:AD:AF:DP	1/0:1,2:0.67:3
chr19	1863628	.	A	C	55	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=1;HapScore=2;MGOF=28;MMLQ=20;MQ=57.57;NF=2;NR=3;PP=55;QD=17.9542425094;SC=GCCGCCGCCGACGCCCGCGCT;SbPval=0.65;Source=Platypus;TC=5;TCF=2;TCR=3;TR=5;WE=1863636;WS=1863618;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	1880950	rs4807160	T	C	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	1905356	rs754066	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:66,82:0.55:148
chr19	1905559	rs754065	G	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr19	1908423	rs10408061	T	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.795;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr19	1908694	rs4806818	C	T	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-2.836;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:18,28:0.61:46
chr19	1912934	rs12984675	T	C	5123.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:338,256:0.43:594
chr19	1912986	rs76159002	C	T	4337.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:297,209:0.41:506
chr19	1914795	rs11666645	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	1914940	rs11084918	A	G	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	1915118	rs10853957	A	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	1918023	rs10415845	T	C	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	1918760	rs376128461	CA	C	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=1.214;QD=7.86;ReadPosRankSum=-1.818;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr19	1924005	rs28719567	T	C	679.18	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr19	1924050	rs4807170	T	C	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr19	1952841	rs2396366	T	C	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:126,121:0.49:247
chr19	1953637	rs35628322	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr19	1954126	rs34622118	C	CA	5519.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:109,141:0.56:250
chr19	1954128	rs34797288	T	C	5529.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:108,139:0.56:247
chr19	1970021	rs2074881	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	1986414	rs2286352	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr19	1986455	rs7254820	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr19	1986520	rs7253519	G	A	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:95,85:0.47:180
chr19	1987279	rs11669527	C	T	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:170,119:0.41:289
chr19	1987386	rs8111128	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr19	1997363	rs1610045	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:106,75:0.41:181
chr19	2073407	rs141783611	C	T	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:139,131:0.49:270
chr19	2097071	.	G	A	4580.77	.	AC=1;AF=0.500;AN=2;DP=457;set=Intersection	GT:AD:AF:DP	0/1:232,222:0.49:454
chr19	2098398	rs143353597	A	G	3075.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:92,142:0.61:234
chr19	2099111	rs12984606	T	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr19	2099376	rs112530329	G	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr19	2114126	.	TCTTCTC	T	1612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=4.017;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.518;QD=17.72;ReadPosRankSum=-0.714;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:48,43:0.47:91
chr19	2129027	.	GCCGCTCCGACACTGCACCCCGTGGAGCCGGCCCGCCCCCA	G	608	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=7;HapScore=2;MGOF=3;MMLQ=24;MQ=57.87;NF=3;NR=18;PP=608;QD=30.2857142857;SC=GCCCGCCCCCGCCGCTCCGAC;SbPval=0.94;Source=Platypus;TC=78;TCF=22;TCR=56;TR=21;WE=2129074;WS=2129017;set=Platypus	GT:AD:AF:DP	1/0:57,21:0.27:78
chr19	2137131	rs201564477	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:84,62:0.42:146
chr19	2214057	rs2074552	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr19	2216753	.	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,59:0.57:104
chr19	2226772	rs2302061	G	C	3853.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:190,179:0.49:369
chr19	2244675	rs72985496	A	C	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:130,198:0.60:328
chr19	2244903	rs6510652	T	G	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	2246652	rs2074861	G	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	2249477	rs10407022	G	T	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	2250528	rs8112524	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	2251512	rs7252789	T	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	2251817	rs10417628	T	C	9116.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr19	2253590	rs3746158	C	T	2240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=0.082;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:86,108:0.56:194
chr19	2255336	rs886363	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr19	2271282	rs2074457	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr19	2271323	rs2523175	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr19	2271577	rs28384674	CT	C	1445.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr19	2271741	rs2074458	G	A	2015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-1.145;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:78,93:0.54:171
chr19	2291125	rs77561854	G	A	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:117,113:0.49:230
chr19	2324060	rs2302057	G	A	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	2324113	rs140121434	A	AC	738.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:64,33:0.34:97
chr19	2324384	rs10404826	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	2328281	rs11666344	G	A	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.50;SOR=2.480;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	2337377	rs3752204	C	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	2337408	rs55710409	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:94,73:0.44:167
chr19	2338956	.	T	TGGCCCCTGCAGGCCAGGGTCTCC	818.73	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr19	2339773	rs60107832	G	A	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:138,118:0.46:256
chr19	2339949	rs3746285	T	C	10201.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	2339958	rs1609752	T	C	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	2339990	rs371763993	C	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:85,69:0.45:154
chr19	2340046	rs3746287	C	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:75,78:0.51:153
chr19	2340154	rs5826760	G	GC	4017.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	2340235	rs12460384	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr19	2341047	rs55818311	C	T	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	2341059	rs11880345	G	A	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=5.889;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.089;QD=11.84;ReadPosRankSum=2.023;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:70,85:0.55:155
chr19	2341060	rs7245824	T	C	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.81;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	2341093	rs76166147	CCTCCCTGGA	CA,C	2650.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=133;set=Intersection	GT:AF:DP	0/1:0.55:123
chr19	2341102	rs202164106	AG	A	2658.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-1.127;QD=22.16;ReadPosRankSum=0.373;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:52,68:0.57:120
chr19	2341103	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=1;MGOF=38;MMLQ=24;MQ=60.17;NF=29;NR=24;PP=2962;QD=20;SC=CCTCCCTGGAGGCCGCCCCAG;SbPval=0.54;Source=Platypus;TC=114;TCF=63;TCR=51;TR=53;WE=2341111;WS=2341083;set=Platypus	GT:AD:AF:DP	1/0:61,53:0.46:114
chr19	2341192	rs55856585	TG	T	3075.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:86,81:0.49:167
chr19	2341209	rs7246088	T	C	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:103,94:0.48:197
chr19	2341488	rs76434007	T	A	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:173,125:0.42:298
chr19	2341674	rs3210	G	C	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:137,82:0.37:219
chr19	2344034	rs17852546	C	A	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=4.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=1.140;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:97,60:0.38:157
chr19	2344109	.	AC	A	228.73	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr19	2344484	rs55704748	A	G	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:134,110:0.45:244
chr19	2353148	rs10402284	T	C	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:89,65:0.42:154
chr19	2363785	rs143993232	TGA	T	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr19	2363803	rs78434388	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	2389872	rs891174	G	C	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:182,127:0.41:309
chr19	2389954	rs891175	G	A	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=-0.673;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:95,72:0.43:167
chr19	2389958	rs891176	T	A	2633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.658;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-0.961;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:90,71:0.44:161
chr19	2390089	.	C	T	257.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr19	2398849	rs10407225	A	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:68,80:0.54:148
chr19	2405304	rs78369878	A	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr19	2405559	rs7254110	A	G	4024.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:219,202:0.48:421
chr19	2405641	rs4807260	C	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:89,83:0.48:172
chr19	2410332	rs3848635	T	C	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:145,140:0.49:285
chr19	2410442	rs76437746	G	A	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:126,155:0.55:281
chr19	2413775	rs10153477	C	T	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:106,103:0.49:209
chr19	2413911	rs10153474	G	A	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:141,203:0.59:344
chr19	2413961	rs10153475	G	C	4869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=1.137;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:153,220:0.59:373
chr19	2416796	rs45546534	A	G	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:67,88:0.57:155
chr19	2417991	rs78031006	C	T	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr19	2424030	.	G	A	138.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	2424334	rs74381138	C	G	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:118,106:0.47:224
chr19	2424938	rs7343178	A	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr19	2426198	.	G	GGGTCATGGGGATGCATTTTGGTACCACCCTTTGTTCCAA	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=1.044;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	2426828	rs6945	G	C	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr19	2427152	rs12609742	A	G	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr19	2427204	rs113881095	CT	C	2491.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:46,78:0.63:124
chr19	2432555	rs736705	A	G	4913.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:278,245:0.47:523
chr19	2433890	rs11084940	A	G	6177.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:236,286:0.55:522
chr19	2434551	rs2304241	A	G	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,70:0.54:129
chr19	2438119	rs1865111	C	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:63,86:0.58:149
chr19	2444363	rs11668494	A	G	4104.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:148,198:0.57:346
chr19	2506056	.	GA	G	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=1.591;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr19	2520716	rs1133692	T	C	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr19	2520791	rs3764585	C	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	2557323	rs71929279	GCA	G	2886.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:78,81:0.51:159
chr19	2557392	rs10421267	C	G	3263.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:137,161:0.54:298
chr19	2576272	rs1029753	T	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr19	2717256	rs3745812	C	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr19	2717880	rs7343093	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr19	2732986	rs759073	T	C	7788.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr19	2823257	rs6510702	CT	AC	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr19	2823269	rs6510704	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr19	2833576	rs8107668	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	2833617	rs8107771	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr19	2833943	rs34753687	G	A	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:120,116:0.49:236
chr19	2834808	rs8102063	T	C	8829.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	2841360	rs1006717	G	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:80,79:0.50:159
chr19	2841695	rs10412693	G	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	2841718	rs11667713	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=-0.125;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	2851678	rs11880407	A	T	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:86,60:0.41:146
chr19	2853566	rs10412087	A	G	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:208,147:0.41:355
chr19	2853650	rs45587443	G	A	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:82,73:0.47:155
chr19	2873439	rs9304900	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	2878397	rs11084965	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr19	2896818	rs8100809	C	T	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:126,115:0.48:241
chr19	2896948	rs8104326	T	C	2480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-0.238;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:73,116:0.61:189
chr19	2896953	rs8101379	A	G	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.78;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	2897133	rs8103080	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr19	2900865	rs10420989	G	A	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	2900930	rs12981209	C	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	2901114	rs11279103	CGCCGAAGTCT	C	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.54;ReadPosRankSum=0.505;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr19	2915738	rs2043336	T	A	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr19	2916048	rs2043335	T	A	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	2916325	rs9973295	G	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr19	2917186	rs2288959	T	C	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:89,99:0.53:188
chr19	2917612	rs10410539	T	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:86,117:0.58:203
chr19	2933480	rs3786948	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	2934282	rs3746073	T	C	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	2936435	rs112498801	C	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=0.494;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr19	2936443	rs7251272	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	2936623	rs4807371	C	T	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	2936804	rs11667455	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	2978135	rs445657	G	C	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:58,70:0.55:128
chr19	2979962	.	C	CAA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=0.190;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	2980269	rs4807380	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr19	2981320	.	GGGT	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.426;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr19	2981487	rs10407929	G	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr19	2982047	rs10445609	G	C	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr19	2982293	rs11673024	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr19	2989380	rs3746075	C	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr19	2989697	rs6510730	T	C	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:55,88:0.62:143
chr19	2989801	rs143049112	G	GA	1746.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr19	2989810	rs504199	G	T	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr19	2991814	rs428113	T	C	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	2993427	rs435806	T	C	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:98,73:0.43:171
chr19	2993946	rs35271493	G	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	2994107	rs34438430	C	CT	901.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	2994814	rs439808	T	C	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	2994837	rs401886	A	G	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	2994885	rs11084986	G	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr19	2997790	rs14089	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr19	2997976	rs416799	A	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chr19	3000822	rs35046512	C	CT	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.674;QD=8.36;ReadPosRankSum=0.367;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr19	3006227	rs7249797	A	T	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr19	3006236	rs3050847	A	AAT	1455.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;MQ=60.42;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr19	3008989	rs77281807	C	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:62,80:0.56:142
chr19	3009788	rs216284	T	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	3013616	rs216271	G	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	3013971	rs216272	T	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.577;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	3014639	rs216273	A	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr19	3015545	rs12984941	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	3015937	rs67167576	CTGTTT	C	1063.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr19	3019986	rs59931576	T	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr19	3028572	rs117117014	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr19	3028871	rs2288950	G	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	3045589	rs56801494	C	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=-1.309;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	3053802	rs425485	T	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=7.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-0.778;SOR=1.585;set=HC	GT:AD:AF:DP	0/1:56,34:0.38:90
chr19	3056213	rs3888377	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=1.262;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	3061344	rs62125457	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr19	3062857	rs11539938	T	C	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:109,86:0.44:195
chr19	3110349	rs11085000	T	G	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=6.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-0.327;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:93,76:0.45:169
chr19	3110361	rs41276846	C	T	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:84,66:0.44:150
chr19	3113305	rs1682811	G	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr19	3114864	rs3746069	C	T	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:179,134:0.43:313
chr19	3119184	rs308046	T	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr19	3119239	rs4900	C	T	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:166,135:0.45:301
chr19	3119405	rs370286	TG	GT	2554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=8.173;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=0.443;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:90,72:0.44:162
chr19	3136692	rs411210	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	3148839	.	C	CGGAGCA	554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-1.646;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr19	3149990	rs170159	G	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	3150238	rs310680	A	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	3155902	rs2074865	G	A	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	3179513	rs142607299	G	A	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:132,144:0.52:276
chr19	3193180	rs538197	C	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr19	3193484	rs499877	A	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	3196122	rs311615	T	C	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:76,88:0.54:164
chr19	3198695	rs311620	C	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr19	3198777	rs311621	A	G	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:52,102:0.66:154
chr19	3201323	rs311624	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr19	3201678	rs12979678	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr19	3201695	rs311625	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr19	3204172	rs8106438	A	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:54,72:0.57:126
chr19	3206235	rs482758	A	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr19	3207338	rs312068	T	C	5209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=0.236;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:143,138:0.49:281
chr19	3207348	rs312069	G	C	5213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=0.253;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:145,139:0.49:284
chr19	3224896	rs17852497	G	C	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:146,110:0.43:256
chr19	3273818	rs312928	T	C	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	3278206	rs11879556	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	3284819	rs3746064	T	C	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=-1.027;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:35,49:0.58:84
chr19	3285012	rs59656659	T	C	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-2.302;QD=4.58;ReadPosRankSum=-0.214;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr19	3285042	rs113646375	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr19	3293593	rs313784	A	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr19	3366786	rs3764589	G	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr19	3381645	rs67426967	GC	G	12058.73	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr19	3435254	rs2072349	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr19	3448869	rs4807473	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	3452683	rs8105687	A	G	11369.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:2,406:1.00:408
chr19	3456705	rs117299764	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr19	3478646	rs10413312	C	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr19	3480232	rs2240666	A	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.484;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr19	3480358	rs2074961	T	C	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.067;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=30.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-1.461;SOR=2.772;set=HC	GT:AD:AF:DP	0/1:131,50:0.28:181
chr19	3526452	rs2286543	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	3527110	rs10420193	G	T	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:215,191:0.47:406
chr19	3534655	rs740685	G	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,48:0.40:119
chr19	3534696	rs740686	C	T	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:91,54:0.37:145
chr19	3538646	rs114420443	A	G	913.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr19	3538647	rs113259909	C	CGTGGGTGCGTG	932.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr19	3538654	rs1128872	G	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr19	3539203	rs11668417	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:118,77:0.39:195
chr19	3539444	rs7258234	T	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	3544120	rs11667842	G	C	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:77,45:0.37:122
chr19	3546340	rs11555328	G	A	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:106,119:0.53:225
chr19	3546463	rs28528221	T	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr19	3548057	rs6510759	T	C	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:225,171:0.43:396
chr19	3548313	rs2240752	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	3557005	rs1715092	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	3577160	.	TC	T	202.75	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	3578773	rs13269	C	T	7646.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:343,371:0.52:714
chr19	3589339	rs4806942	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr19	3595794	rs4523	A	G	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:90,103:0.53:193
chr19	3595923	rs1131882	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr19	3610502	rs740349	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr19	3611146	rs2074786	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr19	3611186	rs758016	C	T	2445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.73;ReadPosRankSum=-2.391;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:55,63:0.53:118
chr19	3611190	rs758017	C	A	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.84;ReadPosRankSum=-1.923;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:59,65:0.52:124
chr19	3611765	rs2369188	A	G	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:89,126:0.59:215
chr19	3611972	rs2158935	G	A	5104.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:206,237:0.53:443
chr19	3612819	rs62130601	G	A	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:140,125:0.47:265
chr19	3612914	rs6510763	T	C	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:55,81:0.60:136
chr19	3613346	rs2074789	G	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr19	3613400	rs2240504	C	G	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr19	3613422	rs2074790	G	A	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:75,76:0.50:151
chr19	3613596	rs57918402	A	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:93,62:0.40:155
chr19	3614403	rs7255692	T	C	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr19	3619093	rs376892682	C	T	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:143,111:0.44:254
chr19	3623229	rs7252821	A	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	3623505	rs7252742	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr19	3623534	rs7253265	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr19	3626476	rs4806945	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr19	3633273	rs542690	G	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	3637395	rs10408855	T	C	6067.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:237,279:0.54:516
chr19	3638041	rs1879038	G	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr19	3641672	rs3815338	C	T	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr19	3645947	rs12460780	G	A	2732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.925;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:120,133:0.53:253
chr19	3647440	rs4806948	A	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	3653525	rs2074957	C	T	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	3656652	rs10432303	G	A	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	3660944	rs3826944	G	A	11903.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr19	3667461	rs7257360	T	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	3721770	rs630335	G	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	3722079	rs113181248	TGCGTCCGC	T	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr19	3728275	rs1985864	C	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr19	3728609	rs2067019	G	A	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:184,162:0.47:346
chr19	3730041	rs7258176	C	T	3054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.635;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:148,154:0.51:302
chr19	3738649	rs599587	A	C	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=1.179;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:34,47:0.58:81
chr19	3738971	rs600986	A	G	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:100,76:0.43:176
chr19	3740658	rs10416362	T	G	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-0.744;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:26,40:0.61:66
chr19	3749971	rs7257905	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr19	3750205	rs10692689	T	TGG	3979.73	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:149,113:0.43:262
chr19	3750615	rs1046268	T	C	3319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-1.917;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:101,91:0.47:192
chr19	3750622	rs1046271	A	C	3226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=-0.962;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:97,86:0.47:183
chr19	3750690	rs1046278	A	C	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr19	3752874	rs8102086	A	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:115,82:0.42:197
chr19	3753148	rs10414283	A	C	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=6.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.91;ReadPosRankSum=-0.619;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr19	3753152	rs10411927	G	A	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=6.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=-0.443;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr19	3753656	rs12609548	T	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr19	3753769	rs3746120	C	T	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:144,117:0.45:261
chr19	3760334	rs60648147	C	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr19	3762698	rs13960	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	3762926	rs7245624	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr19	3767265	rs7239	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	3771880	rs11085039	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr19	3772028	rs148374636	C	CGG	1000.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.582;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.028;QD=11.77;ReadPosRankSum=-1.086;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:48,37:0.44:85
chr19	3772325	rs10419790	T	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr19	3779934	rs12610723	A	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	3781566	rs11671881	C	A	3004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-1.272;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:138,148:0.52:286
chr19	3783070	rs3746115	G	A	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:90,122:0.58:212
chr19	3784757	rs2074976	T	G	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	3785223	rs4807509	T	G	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	3806162	rs8109765	T	C	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	3806263	rs10416506	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	3810961	rs75643607	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr19	3811457	rs10413220	G	C	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-1.482;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	3819275	rs2301840	A	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr19	3820191	rs2301843	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr19	3820293	rs2301844	A	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:73,28:0.28:101
chr19	3820305	rs2301845	T	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:72,31:0.30:103
chr19	3820389	rs2301846	A	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-2.304;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr19	3822008	rs28510805	C	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr19	3823192	rs34503630	T	C	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr19	3823237	rs2240231	G	A	3259.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:181,157:0.46:338
chr19	3831198	rs12461577	A	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.595;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr19	3831449	rs2240232	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:60,40:0.40:100
chr19	3831525	rs2240233	C	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:83,78:0.48:161
chr19	3831709	rs2240234	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr19	3831765	rs2240235	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr19	3833572	rs56713158	TA	T	1073.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.635;QD=13.26;ReadPosRankSum=-1.000;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:10,71:0.88:81
chr19	3869128	rs35860262	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	3902722	rs2060247	C	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	3910961	rs7245601	G	C	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:91,98:0.52:189
chr19	3920616	rs8108660	T	C	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	3920750	rs10420591	T	C	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.300;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:65,49:0.43:114
chr19	3958324	rs3745980	C	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr19	3958397	rs7255123	A	G	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=5.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-0.750;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:65,77:0.54:142
chr19	3963724	rs2278437	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,73:0.52:140
chr19	3969505	rs2304194	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	3977486	rs36527	A	G	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:55,85:0.61:140
chr19	3979408	rs36526	A	G	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:131,120:0.48:251
chr19	3980824	rs36525	A	G	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr19	3984412	rs12975326	G	A	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:96,107:0.53:203
chr19	4013322	rs2289865	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,63:0.45:139
chr19	4024020	rs2028827	G	A	7726.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	4028067	rs4520954	C	T	6917.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	4028290	rs72976957	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr19	4028783	rs2289863	C	T	5190.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:217,231:0.52:448
chr19	4032949	rs895333	A	G	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	4033244	rs749449	G	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:56,74:0.57:130
chr19	4033462	rs7255988	T	C	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	4033614	rs12460140	G	A	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:118,127:0.52:245
chr19	4037966	rs72976977	T	C	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.676;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:44,42:0.49:86
chr19	4042077	rs4410205	C	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	4090572	rs6629	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr19	4097203	.	TAA	T	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.905;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr19	4117705	rs350890	T	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr19	4153659	rs350879	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	4156866	rs112691598	AC	A	1925.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr19	4156869	rs63310862	C	T	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr19	4169998	rs350852	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	4170378	rs350851	G	A	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	4174950	rs350845	A	G	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	4177051	rs350844	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	4177331	rs350843	A	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	4180690	rs7260071	T	G	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr19	4180836	rs352493	C	T	5718.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	4198154	rs1963331	C	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	4199809	rs112892199	C	CA	2690.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	4199839	rs6510793	A	C	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	4200156	rs2052191	G	A	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	4200206	rs2052192	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	4201805	rs11672646	G	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	4202683	rs352513	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	4202793	rs7260407	A	G	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	4208082	rs2240670	T	C	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	4210017	rs67953324	G	A	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	4210356	rs12978469	G	A	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	4210382	rs72980936	C	T	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	4210401	rs60239405	C	CA	4611.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	4210465	rs12710072	A	G	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=26.30;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	4212519	.	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.537;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	4212742	rs77155546	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr19	4212808	rs58559746	C	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	4216910	rs10413818	G	A	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	4217207	rs353693	T	G	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	4217576	rs150106684	G	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr19	4217587	rs58333777	G	A	307.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	4217956	rs6510794	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	4236858	rs117362192	C	T	1803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-0.224;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:58,84:0.59:142
chr19	4288184	rs2380178	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr19	4288205	rs888928	T	C	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.458;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:46,32:0.41:78
chr19	4288220	rs888929	C	T	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=0.246;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:61,41:0.40:102
chr19	4288332	rs888930	A	G	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:158,116:0.42:274
chr19	4292841	rs28477168	C	G	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:167,168:0.50:335
chr19	4292898	rs55767880	C	G	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:156,154:0.50:310
chr19	4292961	rs11287595	CT	C	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-1.098;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:51,50:0.50:101
chr19	4294542	rs12977100	C	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	4297855	.	TAA	T,TA	519.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.410;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.55;MQRankSum=0.614;QD=13.68;ReadPosRankSum=-1.686;SOR=2.002;set=HC	GT:AD:AF:DP	1/2:5,11,22:0.29,0.58:38
chr19	4297925	rs12459030	G	C	5000.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	4302504	rs888933	C	G	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	4304774	rs17523436	G	A	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.13;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	4304855	.	A	G	294	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=6;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=0;NR=11;PP=294;QD=29.8882920497;SC=CCCCGCCTCCACCCCAGCTGC;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=11;WE=4304863;WS=4304845;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	4306311	rs4807578	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	4308098	rs11669091	T	C	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	4323050	rs143776863	C	T	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:81,71:0.47:152
chr19	4357555	rs4807583	A	G	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	4402840	rs77734548	G	A	113.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	4408751	rs243347	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	4430524	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=0.103;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:164,29:0.15:193
chr19	4442999	rs243383	T	G	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	4453235	rs72990638	C	T	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	4453324	rs376965	T	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,114:0.98:116
chr19	4454000	rs11909	G	A	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	4457496	rs10425328	CG	GC	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	4457791	.	TTAAA	T	492.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.64;ReadPosRankSum=-1.577;SOR=0.378;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr19	4472322	rs61606737	C	T	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,64:0.49:130
chr19	4472447	rs57169858	TG	T	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.21;ReadPosRankSum=1.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	4472460	rs182316418	G	T	378.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.13;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	4472484	.	G	GAGGC	73.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	4472503	rs189053880	C	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	4475362	rs2288932	T	G	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:116,115:0.50:231
chr19	4475606	rs3816048	T	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	4488632	rs10422594	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	4488926	rs10421685	G	A	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=26.06;SOR=1.629;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	4488949	.	C	CTT	360.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=9.118;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-1.190;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr19	4489013	.	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.197;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=8.016;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-1.783;QD=2.62;ReadPosRankSum=-0.518;SOR=0.008;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr19	4489014	.	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.197;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=8.016;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-1.783;QD=2.62;ReadPosRankSum=-0.388;SOR=0.008;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr19	4489021	.	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=-1.735;QD=2.93;ReadPosRankSum=1.057;SOR=0.009;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr19	4491476	rs11878416	G	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	4493708	rs892161	A	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:84,58:0.41:142
chr19	4496198	rs2288930	A	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	4498154	rs919798	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	4498157	rs919797	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	4498245	rs2288926	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	4498440	rs2288924	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:55,48:0.47:103
chr19	4498700	rs10406139	A	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	4499632	rs72100503	AAGCTGGCCGGGGAGG	A	3656.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	4502201	rs8887	T	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.346;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	4502282	rs13041	C	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	4502287	rs7254167	G	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	4505110	rs77162490	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	4508945	rs8105775	A	G	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	4510388	rs56906779	AC	A	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.821;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr19	4510530	rs7250947	G	A	4760.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:195,229:0.54:424
chr19	4510849	rs369001887	C	T	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.997;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:400,120:0.23:520
chr19	4511140	rs7255715	C	G	8286.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:313,353:0.53:666
chr19	4511350	rs7259721	T	A	19268.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:67,607:0.90:674
chr19	4511365	rs116973517	C	G	6628.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:373,302:0.45:675
chr19	4511453	rs7255187	G	A	6444.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:382,310:0.45:692
chr19	4511525	rs7256712	A	G	13823.77	.	AC=1;AF=0.500;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	0/1:404,538:0.57:942
chr19	4511647	rs7256387	C	G	9461.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:272,408:0.60:680
chr19	4511725	rs73920825	T	C	9357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.930;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=5.885;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-9.844;QD=17.49;ReadPosRankSum=-5.457;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:289,246:0.46:535
chr19	4511730	rs62115190	T	C	9492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=6.963;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-9.320;QD=17.20;ReadPosRankSum=-4.172;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:302,250:0.45:552
chr19	4511830	rs7257142	A	G	9363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;ClippingRankSum=0.000;DB;DP=1116;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-6.293;QD=8.41;ReadPosRankSum=2.647;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:631,483:0.43:1114
chr19	4511908	rs10423606	C	T	11573.77	.	AC=1;AF=0.500;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	0/1:495,321:0.39:816
chr19	4511920	rs28460600	T	C	9761.77	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:328,447:0.58:775
chr19	4511927	rs10422025	G	A	12942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.352;QD=17.28;ReadPosRankSum=0.814;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:416,333:0.44:749
chr19	4511927	.	GCA	ACG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=1;MMLQ=24;NF=208;NR=245;PP=2944;QD=20;SC=ACCTGTCTGGGCAGCCCCTTT;SbPval=0.64;Source=Platypus;TC=880;TCF=427;TCR=453;TR=453;WE=4511943;WS=4511898;set=Platypus	GT:AD:AF:DP	0/1:427,453:0.51:880
chr19	4511929	rs10424401	A	G	12901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.317;QD=17.13;ReadPosRankSum=0.258;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:414,339:0.45:753
chr19	4511955	rs7260518	T	C	22223.77	.	AC=2;AF=1.00;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	1/1:0,831:1.00:831
chr19	4512409	rs10410197	T	C	6906.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:202,284:0.58:486
chr19	4512514	rs7259625	G	C	8734.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:251,388:0.61:639
chr19	4512613	rs74327986	T	G	8023.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:232,223:0.49:455
chr19	4512629	rs146679364	C	T	7348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-5.142;QD=17.58;ReadPosRankSum=-1.219;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:228,190:0.45:418
chr19	4512636	rs140230284	A	C	6570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-5.412;QD=16.72;ReadPosRankSum=-2.914;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:224,169:0.43:393
chr19	4512649	rs200062551	A	G	5013.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:229,127:0.36:356
chr19	4512661	rs58830758	G	A	3538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-7.388;QD=11.06;ReadPosRankSum=-7.386;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:227,93:0.29:320
chr19	4512676	rs59593546	T	G	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.234;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-7.224;QD=4.68;ReadPosRankSum=-10.927;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:233,75:0.24:308
chr19	4512946	.	A	G	538	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=47;MMLQ=24;MQ=43.12;NF=24;NR=16;PP=538;QD=14.3192803137;SC=TCATGGCACCAGTCACCCCAC;SbPval=0.11;Source=Platypus;TC=130;TCF=58;TCR=72;TR=40;WE=4512954;WS=4512936;set=Platypus	GT:AD:AF:DP	0/1:90,40:0.31:130
chr19	4513143	rs4807595	C	T	5346.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.879;MLEAC=2;MLEAF=1.000;MQ=57.63;MQRankSum=3.229;QD=41.77;ReadPosRankSum=-0.747;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:8,120:0.94:128
chr19	4513143	.	CA	TG	1732	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=26;MQ=49.77;NF=69;NR=40;PP=1732;QD=16.3804392189;SC=TTCATGGCACCAGTCACCCCA;SbPval=0.43;Source=Platypus;TC=235;TCF=153;TCR=82;TR=109;WE=4513152;WS=4513133;set=Platypus	GT:AD:AF:DP	0/1:126,109:0.46:235
chr19	4513144	rs4807596	A	G	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:8,134:0.94:142
chr19	4513559	rs4807597	A	G	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr19	4524016	rs1062223	G	A	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr19	4525046	rs1610090	A	G	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	4525217	rs11670485	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	4529622	.	TACACACACACACACACAC	T,TACACACACACACACACACACACAC	890.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=28;set=Intersection	GT:AF:DP	1/2:0.74,0.26:23
chr19	4534014	rs11085080	G	A	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=1.236;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:56,46:0.45:102
chr19	4539086	rs7254885	A	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	4550698	rs2043328	C	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	4555310	rs10853973	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	4556916	rs117217779	G	A	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.153;QD=8.23;ReadPosRankSum=0.864;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:91,67:0.42:158
chr19	4557056	rs10422881	A	C	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr19	4558431	rs2304213	C	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	4670139	rs113015946	G	A	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:107,117:0.52:224
chr19	4684642	rs8105807	A	G	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:114,83:0.42:197
chr19	4685276	rs10421782	A	C	4706.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:179,215:0.55:394
chr19	4700187	rs2277735	A	G	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-0.848;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:47,70:0.60:117
chr19	4714468	rs7251000	C	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr19	4720031	rs3833278	C	CCCT	857.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.137;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:33,24:0.42:57
chr19	4720042	rs11672100	G	T	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=-0.100;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr19	4720052	rs3833277	G	GC	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.024;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr19	4722408	rs116853154	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.068;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr19	4723670	rs2277732	C	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr19	4769740	rs11878617	C	A	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:77,75:0.49:152
chr19	4770564	rs11669473	C	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=1.388;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	4772449	rs2885717	C	T	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	4772463	rs3760951	C	T	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	4816241	rs1046673	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	4817288	rs11466722	A	AAGG	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.33;ReadPosRankSum=1.238;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	4818378	rs7255265	T	C	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:61,83:0.58:144
chr19	4844665	rs36066928	TC	T	715.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr19	4847713	rs9973235	A	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	4847874	rs9304915	A	G	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	4852106	rs2271058	A	G	23533.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	1/1:0,850:1.00:850
chr19	4852137	rs1055919	C	T	21284.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	1/1:0,776:1.00:776
chr19	4852337	rs2271057	A	C	4443.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:157,193:0.55:350
chr19	4859631	rs11552104	G	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,65:0.49:133
chr19	4859937	rs8289	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr19	4902950	rs2602717	C	T	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	4910746	.	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr19	4930693	rs2307203	C	G	2391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.676;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=1.098;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:84,118:0.58:202
chr19	4941456	rs2251519	C	T	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr19	4944555	rs2602730	G	A	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	4944596	rs2251117	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr19	4945914	rs2250982	A	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.62;ReadPosRankSum=2.744;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	4945917	rs2250981	C	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.62;ReadPosRankSum=2.744;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	4945974	rs2250978	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	4950770	rs2307213	C	T	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:70,73:0.51:143
chr19	4954454	rs2247238	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:31,50:0.62:81
chr19	4954644	rs2307207	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr19	4954679	rs55946225	G	GC	2360.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	4960583	rs66972926	CTG	C	2247.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:85,61:0.42:146
chr19	5041178	rs2240678	T	C	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	5041316	rs2240679	T	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr19	5047691	rs2620818	G	A	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:87,95:0.52:182
chr19	5070809	rs730291	C	T	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr19	5110794	rs2613739	A	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	5111994	rs2613736	A	G	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	5114116	rs1017820	T	G	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:180,153:0.46:333
chr19	5114284	rs143609717	G	A	6669.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:355,324:0.48:679
chr19	5119544	rs2256523	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr19	5132051	rs2620839	G	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	5134096	rs2251561	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	5135392	rs2620836	A	G	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	5137192	rs2613790	C	T	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	5137199	rs113545259	T	TC	1141.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:104,49:0.32:153
chr19	5137846	rs2613786	G	A	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	5138140	.	C	T	624.77	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr19	5174025	rs12975415	A	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.604;QD=8.43;ReadPosRankSum=0.895;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr19	5174030	rs2620822	A	G	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=32.72;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	5174180	rs2620821	C	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	5206775	rs1143700	A	G	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:122,118:0.49:240
chr19	5208216	rs60630722	G	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,56:0.42:133
chr19	5208236	rs55727125	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:89,69:0.44:158
chr19	5208514	rs139873720	TG	T	668.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr19	5210622	rs2302224	G	A	4482.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:192,200:0.51:392
chr19	5212380	rs1064300	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:91,72:0.44:163
chr19	5212482	rs2230611	G	A	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,68:0.45:152
chr19	5212586	rs4807696	G	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr19	5214533	rs9304921	A	G	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:142,140:0.50:282
chr19	5214697	rs4807697	A	G	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	5215474	rs73919781	G	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-0.711;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr19	5220900	rs10412973	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	5222071	rs3746132	G	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	5250958	rs10598598	CGGGGGGGGGG	C	548.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=42.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	5255992	rs34548642	A	AT	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-1.659;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	5256251	rs59925916	G	GT	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.822;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-0.952;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr19	5257341	rs112290142	G	A	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:53,101:0.66:154
chr19	5260878	rs36016542	T	C	3724.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=44.34;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	5260879	rs10708972	GT	G	3715.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	5260933	rs7246162	A	T	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	5263061	rs55840918	G	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.76;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	5264967	rs4807017	A	G	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	5265222	rs4807703	G	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	5273571	rs1141371	T	G	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:133,172:0.56:305
chr19	5455422	rs4375786	T	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	5455611	rs2240743	C	T	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	5455735	rs2240744	G	A	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:84,121:0.59:205
chr19	5455796	rs420325	A	G	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.63;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	5455796	.	AGTGG	GGTGA,GGTGG	1911	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=6;MMLQ=24;MQ=60.0;NF=73,125;NR=58,96;PP=1911,1200;QD=14.995937976;SC=CCGCGCAGGCAGTGGTACGGG;SbPval=0.52;Source=Platypus;TC=224;TCF=126;TCR=98;TR=131,221;WE=5455808;WS=5455786;set=Platypus	GT:AF:DP	0/1:0.58:224
chr19	5455800	rs2240745	G	A	3474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-1.432;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:100,155:0.61:255
chr19	5455971	rs8103406	G	T	12286.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.37;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	5455971	.	GCCATCGT	TCCATCGC,TCCATTGC	1941	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=69,58;NR=58,41;PP=1941,1377;QD=15.7044714556;SC=CTCTCTGGGCGCCATCGTGCT;SbPval=0.46;Source=Platypus;TC=231;TCF=129;TCR=102;TR=127,99;WE=5455986;WS=5455961;set=Platypus	GT:AF:DP	0/1:0.55:231
chr19	5455976	rs61740902	C	T	2613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=1.431;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:166,124:0.43:290
chr19	5455978	rs8107825	T	C	12897.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	5456450	rs8111108	T	C	11497.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:1,421:1.00:422
chr19	5591735	rs2285963	G	A	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:100,69:0.41:169
chr19	5595354	rs10413286	T	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr19	5661896	rs35301279	A	AT	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.731;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr19	5667204	rs148831822	AC	A	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.375;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:127,27:0.18:154
chr19	5684775	rs35832694	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr19	5687059	rs113901360	G	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=-0.361;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr19	5691987	rs3835296	T	TCAGTTCTGGCCCAGACAGGGCCTGACATC	3053.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	5693638	rs140893513	G	A	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:106,155:0.59:261
chr19	5696245	rs4073993	A	G	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	5696744	rs200136098	G	A	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.209;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:65,71:0.52:136
chr19	5707204	rs945828	T	C	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	5708473	rs78071140	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=8.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=2.106;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr19	5708480	rs150872036	A	AG	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=13.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.81;ReadPosRankSum=1.645;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr19	5708484	rs55939714	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=0.241;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	5727414	rs5826899	C	CT	3639.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	5759231	rs11879365	T	G	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	5766090	rs2446200	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	5768331	rs10680062	T	TTTTA	1869.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	5776371	rs112059347	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr19	5776427	rs77584859	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	5778517	rs2305925	A	T	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:159,123:0.44:282
chr19	5782931	rs115109202	C	A	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-1.474;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:59,59:0.50:118
chr19	5783634	rs2446210	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr19	5783712	rs2446211	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=2.114;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	5783905	rs3745640	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr19	5784370	rs2446212	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:101,64:0.39:165
chr19	5785113	rs3826798	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	5786718	rs2305927	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr19	5786815	rs10811	G	A	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-0.277;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr19	5788228	rs113274115	GCA	G	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=3.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.418;SOR=1.187;set=HC	GT:AD:AF:DP	0/1:386,47:0.11:433
chr19	5789565	rs2436487	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:122,61:0.33:183
chr19	5791167	rs2290776	T	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr19	5824420	rs71934499	GGT	G	2690.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	5844537	rs778986	A	G	8737.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:1,333:1.00:334
chr19	5844649	rs812936	G	A	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	5866585	rs778982	C	T	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.438;QD=9.40;ReadPosRankSum=-0.388;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:47,45:0.49:92
chr19	5866654	rs778983	A	G	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.847;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-3.952;QD=9.39;ReadPosRankSum=0.114;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:43,38:0.47:81
chr19	5866736	rs57100281	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=-3.609;QD=3.07;ReadPosRankSum=-0.538;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr19	5866816	rs28541500	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.56;MQRankSum=-2.035;QD=2.69;ReadPosRankSum=1.100;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr19	5866840	rs702065	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.164;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=7.991;MLEAC=1;MLEAF=0.500;MQ=40.73;MQRankSum=-1.693;QD=6.94;ReadPosRankSum=-0.466;SOR=2.554;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	5867154	rs140776824	G	A	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:40,60:0.60:100
chr19	5892797	rs72989069	T	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr19	5894584	rs12974991	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr19	5994823	rs71942694	CGAG	C	3876.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	5995450	rs452767	T	C	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	5995582	rs2302222	T	C	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	6026288	rs34910462	GA	G	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.560;QD=1.42;ReadPosRankSum=-0.431;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr19	6042059	rs2288846	C	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:60,78:0.57:138
chr19	6141471	rs10853992	C	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr19	6141758	rs9304926	G	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	6141809	rs9304927	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	6147743	rs9304929	G	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr19	6151549	rs10422296	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr19	6151703	rs7252466	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.119;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:49,32:0.40:81
chr19	6156483	rs4807840	T	C	3748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=0.019;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:170,176:0.51:346
chr19	6156510	rs33937754	A	G	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:173,159:0.48:332
chr19	6161110	rs372263768	C	CAAA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.997;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr19	6230771	rs2233185	T	G	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-0.170;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	6262355	rs2227261	C	T	2453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-1.343;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:183,131:0.42:314
chr19	6306971	rs4807863	G	A	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	6333290	rs2335192	T	C	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	6361845	rs57445020	G	GC	4799.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	6364742	rs371513262	GT	G	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.740;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.503;QD=5.39;ReadPosRankSum=-0.901;SOR=1.362;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr19	6366149	rs2860168	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr19	6366230	rs10420388	A	G	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:121,139:0.53:260
chr19	6366481	rs10418574	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr19	6374813	rs10421175	T	C	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=1.245;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:45,67:0.60:112
chr19	6375831	rs2304198	G	A	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr19	6383537	rs3745573	G	A	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:81,69:0.46:150
chr19	6391847	rs6510895	C	T	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr19	6392006	rs2304196	T	C	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,53:0.57:93
chr19	6392078	rs2247785	A	G	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr19	6415443	rs1616305	T	C	11120.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr19	6416696	rs80332810	T	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:80,89:0.53:169
chr19	6430106	rs34488963	C	T	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:146,192:0.57:338
chr19	6436304	rs2860182	TC	CT	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr19	6442182	.	C	G	686	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=13;HapScore=1;MGOF=8;MMLQ=24;MQ=57.99;NF=0;NR=37;PP=686;QD=19.4803030418;SC=TGGGAGGGGGCGGGGGGGGCA;SbPval=1.0;Source=Platypus;TC=74;TCF=20;TCR=54;TR=37;WE=6442190;WS=6442172;set=Platypus	GT:AD:AF:DP	0/1:37,37:0.50:74
chr19	6443675	rs348341	G	A	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.254;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:52,51:0.50:103
chr19	6444442	.	C	T	152.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	6452305	rs173229	A	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:80,48:0.38:128
chr19	6456019	rs10424879	T	C	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=0.936;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:49,28:0.36:77
chr19	6456019	.	TGC	CGA	833	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=23;MQ=60.0;NF=17;NR=7;PP=833;QD=36.9361614526;SC=TGTGAGCCACTGCGCCTGGCC;SbPval=0.68;Source=Platypus;TC=68;TCF=46;TCR=22;TR=24;WE=6456029;WS=6456009;set=Platypus	GT:AD:AF:DP	1/0:44,24:0.35:68
chr19	6456021	rs10418566	C	A	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.130;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=1.102;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:50,28:0.36:78
chr19	6456062	rs10418596	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr19	6456324	rs10425555	T	C	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:42,81:0.66:123
chr19	6456339	rs10425567	T	C	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:48,96:0.67:144
chr19	6456603	rs10418327	G	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:41,62:0.60:103
chr19	6457367	rs348370	T	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	6464936	rs348359	G	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr19	6466482	rs348362	A	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr19	6471203	rs10415980	A	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr19	6477256	rs348398	G	T	1584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=2.504;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:52,75:0.59:127
chr19	6477324	rs348399	G	C	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:64,75:0.54:139
chr19	6478925	rs3745570	C	G	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:116,189:0.62:305
chr19	6495064	rs446199	C	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	6532630	rs146976620	TTG	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.009;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	6535080	rs2234182	T	C	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	6583564	rs72193958	CTTTTTTTTTTTT	C	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.94;ReadPosRankSum=-1.645;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	6585921	rs453462	G	C	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	6586268	rs1862511	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:57,42:0.42:99
chr19	6589960	rs11361927	CT	C	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-0.614;SOR=1.567;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	6665020	rs344560	T	C	16560.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr19	6666908	rs147441311	AAAATAAAT	A	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	6677989	rs17030	G	A	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	6679360	rs344555	T	C	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	6679511	rs2277984	C	T	8196.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr19	6679563	rs2277983	T	C	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	6689309	rs370834365	CCT	C	759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=0.883;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr19	6689371	.	CCT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.001;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.85;ReadPosRankSum=-1.180;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	6710572	rs189367	G	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.73;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	6732615	rs2047139	T	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr19	6732982	rs2012357	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.432;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr19	6737481	rs340138	T	C	4677.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:143,219:0.60:362
chr19	6737509	rs339401	G	A	5400.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:177,251:0.59:428
chr19	6737644	rs3745556	G	A	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:95,132:0.58:227
chr19	6743634	rs339407	G	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-1.817;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:45,57:0.56:102
chr19	6744762	rs339405	A	C	3823.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:206,180:0.47:386
chr19	6754188	rs2305807	T	C	10677.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr19	6754774	rs168129	C	A	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	6755007	rs2305806	T	C	7308.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	6755155	rs12608960	T	C	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	6759631	rs62125124	C	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:81,76:0.48:157
chr19	6760499	rs10417123	G	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	6760520	rs10419595	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	6760974	rs7258236	T	C	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	6761011	rs7246122	T	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	6763718	rs2305805	A	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	6833072	rs308200	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	6833162	rs78698684	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=1.827;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr19	6833777	rs186295	A	G	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	6833989	rs308199	G	T	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	6836271	rs308196	A	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	6836836	rs308194	G	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	6836844	rs6146454	GACACACACACACACACACACAC	G	2013.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.48;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	6887736	rs3826782	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	6890432	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.622;QD=1.43;ReadPosRankSum=-1.382;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr19	6908675	rs34044572	C	CT,CTT	1695.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.142;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-1.096;SOR=1.037;set=HC	GT:AD:AF:DP	1/2:20,73,26:0.61,0.22:119
chr19	6913707	rs466876	C	T	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:90,71:0.44:161
chr19	6913811	rs457857	A	G	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.374;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	6913878	rs462913	G	T	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	6919529	rs171674	T	C	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	6919624	rs373533	A	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	6919753	rs461645	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	6919859	rs11668909	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	6919879	rs252566	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	6921705	.	G	GT	837.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=0.480;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr19	6921713	rs34941944	G	GT	2973.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.79;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	6924672	rs2290634	A	G	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	6926355	rs4807915	T	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	6926378	rs2228539	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	6935113	rs252551	C	T	5876.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	6935121	rs1160969	T	TAA	8021.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	6937172	rs12981770	C	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr19	6937683	rs388711	A	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:89,96:0.52:185
chr19	6939910	rs463891	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr19	6940189	rs464849	G	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr19	6953167	rs11085208	C	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr19	6954725	rs11085209	G	A	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	6960834	rs459883	A	C	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	6961182	rs460698	G	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	6972357	rs252579	C	T	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:104,57:0.35:161
chr19	6980939	rs2035972	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	6981849	rs1874003	T	C	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	6988955	rs68152415	A	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	6991010	rs8108538	C	T	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	6994987	rs6510937	C	A	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:112,139:0.55:251
chr19	7005818	rs10414331	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	7005905	rs62126094	T	A	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.70;QD=28.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	7005935	rs73492763	G	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=42.61;MQRankSum=0.347;QD=14.83;ReadPosRankSum=1.030;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	7011717	rs7254172	T	C	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	7011766	rs6510942	T	C	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	7011826	rs7254322	T	C	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	7011858	rs114601404	C	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-2.897;QD=7.93;ReadPosRankSum=-0.888;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	7011858	.	CAG	GAC	282	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=24;MQ=46.26;NF=6;NR=3;PP=282;QD=37.274208318;SC=GCCTTGGGACCAGTTCTGCCT;SbPval=0.46;Source=Platypus;TC=22;TCF=16;TCR=6;TR=9;WE=7011868;WS=7011848;set=Platypus	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	7011860	rs7249689	G	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-2.897;QD=7.76;ReadPosRankSum=-0.988;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	7011876	rs113730497	GT	G	121.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=53.60;MQRankSum=-2.207;QD=5.53;ReadPosRankSum=0.196;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr19	7011878	.	C	A	130.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr19	7012162	rs66626943	C	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-2.697;QD=5.14;ReadPosRankSum=-1.001;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	7012180	.	G	A	28	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=4;HapScore=2;MGOF=10;MMLQ=29;MQ=54.03;NF=1;NR=3;PP=28;QD=15.6928031368;SC=CTTGAAGGGGGAAGAGGCCTG;SbPval=0.58;Source=Platypus;TC=10;TCF=2;TCR=8;TR=4;WE=7012188;WS=7012170;set=Platypus	GT:AD:AF:DP	1/0:6,4:0.40:10
chr19	7074872	rs2967648	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	7083629	rs966591	A	G	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	7083761	rs8110740	A	G	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	7116963	rs1051690	T	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	7117506	rs11883202	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr19	7122511	rs34073323	AT	A	428.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	7132081	rs2860175	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr19	7150418	rs2252673	C	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	7166036	rs62124510	C	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.885;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr19	7166043	rs57156578	T	TA	564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.433;SOR=1.868;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	7166109	rs2059807	A	G	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	7166138	rs3815902	G	A	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:69,98:0.59:167
chr19	7166376	rs2059806	C	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr19	7166388	rs2229429	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,50:0.50:101
chr19	7167951	rs2860177	T	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr19	7168213	rs2245143	C	G,T	1788.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=77;set=Intersection	GT:AF:DP	1/2:0.44,0.56:77
chr19	7170517	rs2860178	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	7172209	rs8113777	C	T	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr19	7174619	rs2229435	A	G	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:118,107:0.48:225
chr19	7184238	rs6510959	G	A	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.05;ReadPosRankSum=-1.203;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr19	7184243	rs41315074	C	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.57;ReadPosRankSum=-1.570;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr19	7184275	rs2860179	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	7184518	rs891087	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr19	7184651	rs3835070	GGA	G	296.82	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	7184672	.	GGGAAATAAAT	G	382	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=2;HapScore=4;MGOF=16;MMLQ=24;MQ=60.0;NF=1;NR=15;PP=382;QD=24.25;SC=GAGAGAGAGAGGGAAATAAAT;SbPval=0.57;Source=Platypus;TC=19;TCF=1;TCR=18;TR=16;WE=7184689;WS=7184661;set=Platypus	GT:AD:AF:DP	0/1:3,16:0.84:19
chr19	7184674	.	GAAATAAAT	G	191	.	AC=2;AF=1.00;AN=2;BRF=0.07;FR=0.5000;HP=3;HapScore=4;MGOF=30;MMLQ=23;MQ=60.0;NF=0;NR=14;PP=191;QD=14.0;SC=GAGAGAGAGGGAAATAAATAA;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=14;WE=7184689;WS=7184661;set=Platypus	GT:AD:AF:DP	1/1:2,14:0.88:16
chr19	7293898	rs7508518	G	C	114.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	7427607	rs11260007	T	C	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	7427657	rs72990744	T	G	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	7437583	rs7507709	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	7440670	rs1025281	G	A	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.681;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:82,65:0.44:147
chr19	7440870	rs1015956	A	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr19	7441649	rs72992618	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	7443253	rs8113073	C	T	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:89,106:0.54:195
chr19	7506755	rs2287910	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr19	7506982	rs10424311	C	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr19	7507010	.	CCCTTCCTTCCTTCCTTCCTTCCTT	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.65;ReadPosRankSum=-1.018;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	7509046	rs2287911	C	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr19	7516210	rs74663465	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr19	7518268	rs11463454	T	TC	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr19	7524771	rs2287913	C	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:120,72:0.38:192
chr19	7524855	rs2287915	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:90,50:0.36:140
chr19	7528734	rs2287918	A	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,43:0.36:118
chr19	7531690	.	C	CAA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.48;ReadPosRankSum=0.628;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	7532011	rs78931124	G	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:100,91:0.48:191
chr19	7532576	rs2303143	CG	TA	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	7533767	rs10405143	T	G	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:114,47:0.29:161
chr19	7533850	rs9329368	A	G	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.805;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.056;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:135,45:0.25:180
chr19	7538039	rs11880122	A	G	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	7538117	rs11880140	A	G	4098.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-0.140;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:2,158:0.99:160
chr19	7543113	rs7251857	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr19	7547074	rs2303146	A	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:115,99:0.46:214
chr19	7550667	rs10419652	A	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr19	7565922	rs118064197	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,79:0.48:163
chr19	7568966	rs113706007	A	ATCTCTCTC,ATCTC	1712.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=43;set=Intersection	GT:AF:DP	1/1:0.97:40
chr19	7570548	rs117171260	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr19	7570729	rs683729	G	A	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	7570978	rs685034	T	C	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	7571094	rs3826735	G	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr19	7584223	rs11555037	A	G	7521.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:337,356:0.51:693
chr19	7585926	rs12462804	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr19	7592945	rs12462124	G	A	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:72,71:0.50:143
chr19	7593589	rs612862	C	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:72,121:0.63:193
chr19	7594159	rs625910	G	A	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:67,109:0.62:176
chr19	7595121	rs11880842	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr19	7595159	rs2305888	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr19	7600504	rs74956393	G	A	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:95,102:0.52:197
chr19	7606737	rs492092	G	C	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	7606908	rs17854645	G	C	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr19	7607023	rs577866	T	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	7607441	rs574930	C	T	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:79,97:0.55:176
chr19	7607564	rs620744	T	C	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	7615585	rs577219	T	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	7615682	rs66529260	GA	G	300.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr19	7615903	rs8107538	G	A	3466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.829;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=1.696;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:115,172:0.60:287
chr19	7616059	rs3745350	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-0.990;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	7616347	rs473899	G	A	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.097;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:103,70:0.40:173
chr19	7616474	rs661825	C	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	7618660	rs508740	A	G	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:57,70:0.55:127
chr19	7619199	rs534464	C	G	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	7619229	rs563266	T	C	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-0.680;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:58,64:0.52:122
chr19	7619239	rs597582	T	C	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.12;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	7619329	rs598023	G	A	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	7619338	rs598028	G	C	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	7619647	rs599328	GT	CC	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	7619700	rs524530	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	7619760	rs539887	A	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr19	7620116	rs563826	A	G	4410.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:176,204:0.54:380
chr19	7621475	rs45505598	T	G	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:192,158:0.45:350
chr19	7621648	rs489056	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr19	7621981	rs2446176	A	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	7622226	rs1645800	G	A	11553.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:44,499:0.92:543
chr19	7623700	rs535208	G	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	7624078	rs538850	C	T	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:106,98:0.48:204
chr19	7625723	rs62111318	C	T	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:81,92:0.53:173
chr19	7626013	rs11307097	AC	A	3997.73	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:102,151:0.60:253
chr19	7626071	rs62111319	T	C	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:82,107:0.57:189
chr19	7626275	rs45474094	C	G	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr19	7626669	rs2303178	G	A	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=5.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=1.868;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:128,117:0.48:245
chr19	7670033	rs56244737	G	GGT,GGTGTGTGTGTGTGTGTGTGT	2355.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=104;set=Intersection	GT:AF:DP	1/2:0.42,0.43:90
chr19	7672636	rs74556722	C	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr19	7675877	rs1674034	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	7681351	rs807812	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr19	7685843	rs794078	G	A	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,67:0.50:135
chr19	7686260	rs4134862	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr19	7687428	rs4134853	G	A	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:223,156:0.41:379
chr19	7687626	rs4134851	C	G	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:217,151:0.41:368
chr19	7688614	rs2335521	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr19	7688837	rs4134843	CA	TG	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	7691001	rs4134838	G	C	1818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=2.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.195;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:136,90:0.40:226
chr19	7692058	rs794084	G	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	7692076	rs4134826	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr19	7694602	rs794085	C	G	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:108,121:0.53:229
chr19	7695620	rs11260004	T	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,64:0.47:136
chr19	7695636	rs117622602	T	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr19	7695841	rs11881820	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr19	7696295	rs794086	T	G	157.81	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	7702136	rs794076	G	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	7704740	rs113656550	A	ATGTGCATG	1776.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr19	7704878	rs200032449	ATG	A	680.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr19	7705452	rs186799855	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:77,58:0.43:135
chr19	7707445	rs145351567	T	TC	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr19	7708214	rs2303115	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=2.149;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	7710040	rs929807	T	C	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:124,93:0.43:217
chr19	7710073	rs61407177	C	T	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=4.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.104;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:143,101:0.41:244
chr19	7710210	rs889187	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr19	7710269	rs710951	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	7711221	rs10001	T	C	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=1.350;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:54,61:0.53:115
chr19	7712193	rs809916	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:53,71:0.57:124
chr19	7712277	rs6791	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	7712425	rs34976997	G	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr19	7712474	rs794074	G	A	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr19	7712577	rs146551063	C	G	1770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-0.537;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:110,91:0.45:201
chr19	7712585	rs794073	T	G	7663.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.32;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	7734511	rs3745367	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr19	7735089	rs10402265	G	C	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	7735318	rs112669651	AGATGATGAT	A	1123.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	7742345	rs8107661	G	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	7744075	.	AC	A	99	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=12;HapScore=2;MGOF=7;MMLQ=28;MQ=60.0;NF=0;NR=8;PP=99;QD=13.125;SC=ACGGGAAATGACCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=14;TCF=1;TCR=13;TR=8;WE=7744083;WS=7744065;set=Platypus	GT:AD:AF:DP	1/1:6,8:0.57:14
chr19	7747332	.	G	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.734;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr19	7763703	rs2287866	A	G	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:135,69:0.34:204
chr19	7764363	rs61499635	GTTTTT	G	2755.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr19	7764436	rs12980031	G	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	7764545	rs3214456	G	GC	1964.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	7764741	rs2287867	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	7764772	rs2287868	T	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	7794605	rs2277997	T	C	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	7795813	rs6603117	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	7796235	rs12978097	C	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr19	7796366	rs12978401	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr19	7796497	rs11260026	C	G	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	7831166	rs868875	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr19	7831226	rs868876	A	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	7831429	rs475896	C	G	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr19	7831628	rs2277998	G	A	4624.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:188,217:0.54:405
chr19	7831700	rs562607	G	C	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:85,69:0.45:154
chr19	7912816	rs2307003	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr19	7913752	rs3826742	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr19	7913974	rs555609	T	C	11476.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr19	7916475	rs2452012	T	C	9915.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr19	7916620	rs580790	A	G	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	7917919	rs12975442	C	T	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:92,83:0.47:175
chr19	7918103	rs526464	A	G	9189.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	7927465	rs57122454	G	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr19	7928462	rs10410459	T	C	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	7935716	rs12984133	G	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chr19	7936208	rs525420	A	G	1199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=0.375;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:91,62:0.41:153
chr19	7938306	rs58971992	A	AG	2045.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	7944348	rs56796931	TC	T	4904.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	7944849	rs11260038	A	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr19	7963914	rs524029	A	C	13298.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr19	7963976	rs2115108	T	C	2943.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:137,138:0.50:275
chr19	7965210	rs61731431	G	A	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:107,143:0.57:250
chr19	7970635	rs4804833	A	G	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr19	7970823	rs138545009	G	GC	502.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr19	7975483	rs138634587	C	T	4537.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:180,216:0.55:396
chr19	7976116	rs10412007	T	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	7976529	rs2303700	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	7986638	rs475002	C	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:126,74:0.37:200
chr19	7990134	rs112578370	T	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	7997676	rs2279528	G	A	8797.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	7998749	rs201631789	T	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:117,88:0.43:205
chr19	8000052	.	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.857;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr19	8000104	rs3745387	A	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	8032432	rs3826740	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	8038679	rs45483997	C	T	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:210,173:0.45:383
chr19	8056816	rs34552465	C	CT	69.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.180;QD=9.96;ReadPosRankSum=-1.465;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr19	8121360	rs2032887	A	G	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr19	8121369	rs1129763	C	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chr19	8122737	rs2303164	G	A	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:146,84:0.37:230
chr19	8122767	rs2303165	T	C	6830.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	8122927	rs2303166	G	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr19	8137102	rs7256904	G	T	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:80,64:0.44:144
chr19	8137192	rs17160134	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr19	8137850	rs376197094	CGTGTGT	C,CGTGTGTGTGTGT	1495.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.884;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=33.99;ReadPosRankSum=-0.739;SOR=0.208;set=HC	GT:AD:AF:DP	1/2:2,22,20:0.50,0.45:44
chr19	8137902	rs7254691	C	T	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	8137908	rs28657412	C	T	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	8138054	rs7257948	C	A	5116.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.038;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=1.762;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:1,199:0.99:200
chr19	8145801	rs61501857	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr19	8145921	rs2303168	C	T	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	8146114	rs2303169	T	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	8146510	rs35618038	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	8148301	rs17202517	G	A	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:161,125:0.44:286
chr19	8148314	rs17160149	A	C	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:103,144:0.58:247
chr19	8151239	rs8103000	G	C	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr19	8152725	rs12460643	A	G	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=1.705;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:90,58:0.39:148
chr19	8154760	rs35033566	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr19	8154990	rs35002391	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:63,97:0.61:160
chr19	8156290	rs8104453	A	G	3448.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:130,162:0.55:292
chr19	8159362	rs7245429	G	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr19	8159409	rs7245552	G	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	8160334	rs12608849	G	A	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-0.678;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:90,73:0.45:163
chr19	8160517	rs10413994	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	8160812	rs10404258	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr19	8162121	rs45624733	C	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr19	8165868	rs56182050	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:85,41:0.33:126
chr19	8167830	rs12986396	A	G	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	8167873	rs56921504	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	8168326	rs3865463	G	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	8168399	rs4289098	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr19	8168545	rs33967815	C	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr19	8171252	rs2126971	A	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	8174650	rs3813779	A	G	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr19	8174724	rs11672038	C	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr19	8176458	rs12609936	A	G	2234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=2.272;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:96,106:0.52:202
chr19	8176463	rs11260057	A	G	7457.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.85;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	8176919	rs4804264	C	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:110,63:0.36:173
chr19	8176945	rs4804063	T	C	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-1.611;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:111,72:0.39:183
chr19	8181483	rs1038081	C	T	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:81,75:0.48:156
chr19	8186281	rs57957109	A	AG	1207.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,51:0.41:123
chr19	8188250	rs10419582	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.830;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=5.83;ReadPosRankSum=2.643;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:43,29:0.40:72
chr19	8188935	rs4804064	G	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,61:0.46:132
chr19	8188999	rs4804269	T	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr19	8190679	rs12986194	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-0.576;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	8191184	rs35025963	C	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:103,63:0.38:166
chr19	8191238	rs10906993	C	T	8591.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	8191248	rs10906994	A	G	8413.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	8191323	rs7260558	T	C	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	8191401	rs3813778	G	A	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:80,108:0.57:188
chr19	8196073	rs67775982	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr19	8196222	rs3813777	T	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,52:0.47:110
chr19	8196444	rs4804271	C	T	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	8196508	rs12974280	G	C	2195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.751;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:119,114:0.49:233
chr19	8197865	rs11666450	C	T	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr19	8198144	rs112342830	A	AT	358.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr19	8200759	rs6603148	G	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	8201051	rs8112525	T	C	20284.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:2,757:1.00:759
chr19	8202944	rs1531547	G	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	8206553	rs73922237	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr19	8206748	rs12162233	G	A	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:183,143:0.44:326
chr19	8207070	rs12162237	G	A	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:109,76:0.41:185
chr19	8209926	rs899208	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr19	8212229	rs142752628	G	A	4113.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:123,194:0.61:317
chr19	8212263	rs11878432	G	A	3621.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:98,173:0.64:271
chr19	8315847	rs379983	A	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	8319206	.	C	CA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.395;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.674;QD=2.04;ReadPosRankSum=-0.640;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	8320656	rs144397154	TGGGGCGGGGC	T	3187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.516;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=45.533;MLEAC=1;MLEAF=0.500;MQ=61.37;MQRankSum=4.854;QD=19.44;ReadPosRankSum=-0.537;SOR=0.046;set=HC	GT:AD:AF:DP	0/1:77,87:0.53:164
chr19	8320890	rs2306199	T	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr19	8326904	rs36259	G	A	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:149,133:0.47:282
chr19	8367033	rs250510	T	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	8370120	rs2232778	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	8381595	rs3214554	CCT	C	2215.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	8381656	.	G	A	441.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr19	8386306	rs2241592	G	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	8386701	rs2241590	G	A	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	8387207	rs1057232	G	A	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	8387619	rs4147653	TAGCCTCTG	T	1719.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	8389520	rs1019757	C	T	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	8389723	rs2972571	T	A	6149.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr19	8397700	rs145917648	AAAAAT	A	1134.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	8398597	rs2913954	G	A	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	8398714	rs2009733	A	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	8398975	rs2913955	C	T	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	8399628	rs710949	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	8399709	rs890852	C	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	8399799	rs890851	G	A	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	8399849	rs890850	C	A	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	8400749	rs2913956	C	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	8402645	rs2913958	A	T	7210.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr19	8438716	rs11672433	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr19	8467066	.	C	T	3110.77	.	AC=1;AF=0.500;AN=2;DP=343;set=Intersection	GT:AD:AF:DP	0/1:193,149:0.44:342
chr19	8467235	rs2913968	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	8467538	rs148680686	C	CTTGTTTTTTTCTTT	1143.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	8468337	rs2230876	C	T	13817.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr19	8468485	rs2241588	C	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:63,68:0.52:131
chr19	8503574	rs11259981	A	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	8528277	rs3764570	A	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	8528310	rs8102587	A	G	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	8533504	rs7258281	T	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	8536373	rs12973706	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	8551094	rs2230647	T	C	7547.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	8551112	rs12977861	G	T	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:86,126:0.59:212
chr19	8551852	rs11669139	A	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	8553630	rs6992	C	T	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	8563456	rs2910435	C	G	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	8567265	rs11667920	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.40;ReadPosRankSum=1.068;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	8567475	rs968502	T	C	1924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.39;ReadPosRankSum=-0.990;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:38,52:0.58:90
chr19	8567500	rs968501	G	A	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.15;ReadPosRankSum=1.063;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:35,50:0.59:85
chr19	8567548	rs968500	A	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=-1.415;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:15,33:0.69:48
chr19	8575765	rs3111564	C	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.896;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr19	8576307	rs2910443	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	8576468	rs2967575	A	C	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr19	8576670	rs7175	C	T	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.896;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr19	8576862	rs2287865	G	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	8576888	rs2042302	C	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	8577868	rs2967578	T	C	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,73:0.56:130
chr19	8578000	rs1064010	G	A	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr19	8578035	rs8100431	T	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr19	8578118	rs1064009	A	G	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr19	8578199	rs1141019	T	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,63:0.51:123
chr19	8578860	rs2287864	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr19	8579011	rs2287863	T	C	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=1.572;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:74,77:0.51:151
chr19	8579081	rs2287862	C	T	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=1.105;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:32,42:0.57:74
chr19	8601051	rs369541772	GTC	G	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.710;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:74,12:0.14:86
chr19	8642160	rs4542783	T	C	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.450;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:74,76:0.51:150
chr19	8645786	rs7252299	A	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	8650157	.	G	A	616.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr19	8657092	rs71179860	C	CGGGATGGGGCTGGAAG	495.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	8660890	rs28433973	G	A	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr19	8662350	rs7248483	C	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.04;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	8669873	rs7260282	T	C	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	8669931	rs7255721	G	C	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	8808373	rs4804079	G	T	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	8808900	rs10410943	A	G	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	8808942	rs2340550	A	G	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	8841558	rs28324	T	C	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:120,133:0.53:253
chr19	8923117	rs250315	A	G	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	8932092	rs2910347	G	A	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	8953801	rs2969292	T	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	8953922	rs2972588	C	T	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	8961772	rs2972591	A	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	8961981	rs1035442	C	G	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr19	8962461	rs1964289	G	C	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	8979112	rs73493609	G	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr19	8982084	rs3752139	C	G	1130.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=11.950;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.06;ReadPosRankSum=-0.529;SOR=5.417;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr19	8982146	rs3752140	T	G	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-0.458;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:70,52:0.43:122
chr19	8986920	rs111523062	CA	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.688;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	8987133	rs3764555	T	C	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	8987218	rs3764556	G	T	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr19	8987348	rs150904213	A	AAG	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.14;ReadPosRankSum=-1.154;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	8992971	.	TA	GG	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.761;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-1.238;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	8992980	.	CT	GG	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.269;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.268;SOR=0.182;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr19	8992988	rs371102230	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.201;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr19	8992993	rs114497462	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.090;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr19	8992996	.	TG	AA	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=4.301;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-0.268;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr19	8993008	.	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.077;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.571;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr19	8993017	rs111468097	G	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.068;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr19	8993020	.	T	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.639;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr19	8994113	rs2009979	T	C	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	8994285	rs752410	T	A	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-1.163;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:30,41:0.58:71
chr19	8994373	rs873869	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	8995853	rs11672574	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	8996019	rs73493652	A	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr19	8996182	rs56136170	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr19	8997189	rs111427194	T	TGGGAGA	1997.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:68,54:0.44:122
chr19	8997343	rs55785038	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr19	8997415	.	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.655;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=37.909;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-8.152;QD=4.53;ReadPosRankSum=-4.113;SOR=3.483;set=HC	GT:AD:AF:DP	0/1:90,18:0.17:108
chr19	8997421	.	A	C	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.671;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=31.751;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-7.922;QD=5.07;ReadPosRankSum=-4.061;SOR=2.595;set=HC	GT:AD:AF:DP	0/1:91,21:0.19:112
chr19	8997424	.	G	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=24.249;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-8.224;QD=5.07;ReadPosRankSum=-3.369;SOR=2.250;set=HC	GT:AD:AF:DP	0/1:95,22:0.19:117
chr19	8997454	rs76629162	G	A	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=16.508;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-9.116;QD=4.18;ReadPosRankSum=2.642;SOR=2.001;set=HC	GT:AD:AF:DP	0/1:115,23:0.17:138
chr19	8997463	rs73001893	C	T	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=19.091;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-9.401;QD=3.72;ReadPosRankSum=3.331;SOR=1.984;set=HC	GT:AD:AF:DP	0/1:123,23:0.16:146
chr19	8997472	rs113387108	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=18.894;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-9.745;QD=3.36;ReadPosRankSum=2.217;SOR=1.987;set=HC	GT:AD:AF:DP	0/1:133,23:0.15:156
chr19	8997481	.	CC	AT	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=18.700;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-10.429;QD=2.63;ReadPosRankSum=0.919;SOR=1.989;set=HC	GT:AD:AF:DP	0/1:154,23:0.13:177
chr19	8997499	.	G	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=13.941;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-10.908;QD=1.61;ReadPosRankSum=-3.231;SOR=1.910;set=HC	GT:AD:AF:DP	0/1:175,22:0.11:197
chr19	8997515	.	A	G	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.955;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=19.608;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-11.093;QD=1.07;ReadPosRankSum=-5.350;SOR=2.982;set=HC	GT:AD:AF:DP	0/1:184,14:0.07:198
chr19	8997680	rs56233329	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	8998532	rs57902801	T	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	8999383	rs79909361	A	G	2914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=19.567;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-11.407;QD=10.96;ReadPosRankSum=2.411;SOR=1.699;set=HC	GT:AD:AF:DP	0/1:183,83:0.31:266
chr19	8999386	rs77049866	A	G	2896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=19.567;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-11.367;QD=10.89;ReadPosRankSum=2.412;SOR=1.698;set=HC	GT:AD:AF:DP	0/1:184,82:0.31:266
chr19	8999429	.	G	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=11.095;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-1.765;QD=2.30;ReadPosRankSum=2.489;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:250,38:0.13:288
chr19	8999438	rs77891947	A	T	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=26.365;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-0.103;QD=3.76;ReadPosRankSum=2.527;SOR=2.286;set=HC	GT:AD:AF:DP	0/1:231,43:0.16:274
chr19	8999449	rs76798407	G	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=29.064;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-0.268;QD=3.81;ReadPosRankSum=0.304;SOR=2.484;set=HC	GT:AD:AF:DP	0/1:231,44:0.16:275
chr19	8999453	rs11085765	C	T	1931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=3.235;QD=7.15;ReadPosRankSum=-0.143;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:171,99:0.37:270
chr19	8999675	rs11085766	A	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr19	9000169	.	C	T	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=21.860;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-10.290;QD=2.70;ReadPosRankSum=-2.984;SOR=3.407;set=HC	GT:AD:AF:DP	0/1:118,18:0.13:136
chr19	9000170	.	A	G	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=21.959;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-10.247;QD=2.69;ReadPosRankSum=-2.975;SOR=3.432;set=HC	GT:AD:AF:DP	0/1:117,18:0.13:135
chr19	9000185	.	A	G	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=32.457;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-10.752;QD=3.96;ReadPosRankSum=-2.736;SOR=4.077;set=HC	GT:AD:AF:DP	0/1:121,23:0.16:144
chr19	9000187	.	C	T	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=32.457;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-10.752;QD=4.28;ReadPosRankSum=-2.447;SOR=4.077;set=HC	GT:AD:AF:DP	0/1:121,23:0.16:144
chr19	9000194	.	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.229;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=27.028;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-10.937;QD=4.38;ReadPosRankSum=-1.811;SOR=3.402;set=HC	GT:AD:AF:DP	0/1:124,24:0.16:148
chr19	9000205	.	C	A	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.259;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=32.200;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-12.001;QD=5.05;ReadPosRankSum=-2.200;SOR=3.683;set=HC	GT:AD:AF:DP	0/1:120,27:0.18:147
chr19	9000206	rs4994075	A	G	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=32.124;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-12.043;QD=5.01;ReadPosRankSum=-2.236;SOR=3.721;set=HC	GT:AD:AF:DP	0/1:121,27:0.18:148
chr19	9000326	rs35743385	G	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr19	9001822	rs12976111	A	G	4047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.95;ReadPosRankSum=1.127;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:64,105:0.62:169
chr19	9001833	rs12976122	A	G	4071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.38;ReadPosRankSum=2.197;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:66,101:0.60:167
chr19	9001835	rs12985778	G	A	4034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.02;ReadPosRankSum=1.845;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:66,102:0.61:168
chr19	9001986	rs12461757	C	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	9002113	rs12462672	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr19	9002493	rs77972891	T	C	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.065;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=8.130;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-10.843;QD=9.20;ReadPosRankSum=1.329;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:115,87:0.43:202
chr19	9002504	rs78327556	T	C	1743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.952;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=7.076;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-10.749;QD=8.72;ReadPosRankSum=1.334;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:116,84:0.42:200
chr19	9002519	rs150783178	G	C	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=9.316;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-11.280;QD=8.03;ReadPosRankSum=1.642;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:128,78:0.38:206
chr19	9002576	rs80214581	T	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=6.408;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-13.921;QD=3.39;ReadPosRankSum=-1.601;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:174,42:0.19:216
chr19	9002587	rs201053591	C	T	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=11.608;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-13.417;QD=4.23;ReadPosRankSum=-3.938;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:174,37:0.18:211
chr19	9002597	.	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=15.450;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-13.837;QD=3.34;ReadPosRankSum=-4.219;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:180,30:0.14:210
chr19	9002612	.	TG	GA	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.012;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=23.200;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-13.798;QD=1.18;ReadPosRankSum=-3.813;SOR=3.143;set=HC	GT:AD:AF:DP	0/1:175,17:0.09:192
chr19	9002622	.	A	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=20.965;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-13.399;QD=0.23;ReadPosRankSum=-3.727;SOR=3.400;set=HC	GT:AD:AF:DP	0/1:168,13:0.07:181
chr19	9003618	rs11085776	C	T	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:66,85:0.56:151
chr19	9003706	rs11085778	T	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,50:0.42:118
chr19	9003749	rs11085779	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr19	9005041	rs62118260	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr19	9005674	rs4804091	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:46,65:0.59:111
chr19	9005719	rs4804375	A	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,56:0.53:106
chr19	9006370	rs79341062	A	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=15.931;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-7.153;QD=3.13;ReadPosRankSum=-1.714;SOR=2.101;set=HC	GT:AD:AF:DP	0/1:128,35:0.21:163
chr19	9006463	rs11668219	C	G	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	9006749	rs75444444	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:78,48:0.38:126
chr19	9007630	rs73005873	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,56:0.37:150
chr19	9007748	rs11673136	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	9009239	.	A	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=2.978;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-10.698;QD=1.02;ReadPosRankSum=-1.467;SOR=0.279;set=HC	GT:AD:AF:DP	0/1:105,11:0.09:116
chr19	9009244	.	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=2.991;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-10.930;QD=0.53;ReadPosRankSum=-1.261;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:110,11:0.09:121
chr19	9012905	.	T	TG	1518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=4.668;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-10.775;QD=6.44;ReadPosRankSum=3.556;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:185,51:0.22:236
chr19	9012910	.	GT	G	1521.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=5.769;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-10.716;QD=6.82;ReadPosRankSum=2.278;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:172,51:0.23:223
chr19	9012918	rs75899847	C	T	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-10.654;QD=7.27;ReadPosRankSum=1.806;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:161,49:0.23:210
chr19	9012930	rs76135098	C	T	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=5.198;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-10.033;QD=6.75;ReadPosRankSum=0.039;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:146,45:0.24:191
chr19	9012937	.	A	G	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=5.690;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-8.978;QD=7.03;ReadPosRankSum=-0.223;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:133,39:0.23:172
chr19	9012947	.	G	A	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=8.992;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-8.288;QD=7.38;ReadPosRankSum=-1.669;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:119,37:0.24:156
chr19	9012958	rs76003547	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:108,20:0.16:128
chr19	9012977	rs78271560	A	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.633;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-5.791;QD=1.13;ReadPosRankSum=-1.524;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:74,9:0.11:83
chr19	9012982	.	GA	AC	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.720;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-6.067;QD=1.80;ReadPosRankSum=-2.769;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:63,9:0.12:72
chr19	9014551	rs12459127	T	C	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	9014569	rs12462963	A	G	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	9015436	rs34959018	T	TG	5275.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:4,141:0.97:145
chr19	9015438	rs34556045	A	C	6447.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr19	9019306	.	T	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-8.466;QD=0.38;ReadPosRankSum=-3.208;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:127,11:0.08:138
chr19	9019313	.	C	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-7.815;QD=0.88;ReadPosRankSum=-3.051;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:128,13:0.09:141
chr19	9019315	.	A	C	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-7.903;QD=0.71;ReadPosRankSum=-2.833;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:131,13:0.09:144
chr19	9019320	.	C	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-7.162;QD=1.31;ReadPosRankSum=-2.462;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:124,15:0.11:139
chr19	9019348	.	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-6.270;QD=3.74;ReadPosRankSum=-1.612;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:113,21:0.16:134
chr19	9019352	.	T	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-6.287;QD=4.04;ReadPosRankSum=-1.786;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:108,20:0.16:128
chr19	9019353	.	G	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-6.259;QD=3.83;ReadPosRankSum=-1.897;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr19	9019371	.	A	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.299;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-5.791;QD=2.03;ReadPosRankSum=-1.232;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:90,11:0.11:101
chr19	9019374	.	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=4.799;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-5.958;QD=2.27;ReadPosRankSum=-2.327;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:82,12:0.13:94
chr19	9019376	.	A	C	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=3.078;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-6.113;QD=2.54;ReadPosRankSum=-2.292;SOR=1.411;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr19	9019377	.	A	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.903;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=3.078;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-6.113;QD=2.64;ReadPosRankSum=-2.285;SOR=1.411;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr19	9019378	.	T	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=3.088;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-6.000;QD=2.25;ReadPosRankSum=-2.642;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:76,11:0.13:87
chr19	9019605	rs12981679	C	G	2011.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	9020211	rs11882373	C	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	9021275	rs7246797	G	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	9024758	rs1862463	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	9025561	.	G	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=5.139;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-7.442;QD=3.40;ReadPosRankSum=-1.637;SOR=1.934;set=HC	GT:AD:AF:DP	0/1:53,4:0.07:57
chr19	9025562	.	C	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=5.141;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-7.642;QD=3.23;ReadPosRankSum=-1.343;SOR=1.936;set=HC	GT:AD:AF:DP	0/1:56,4:0.07:60
chr19	9025568	.	G	A	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.858;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=20.375;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-8.462;QD=2.96;ReadPosRankSum=-4.776;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr19	9025584	rs77811999	T	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.418;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=25.112;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-8.892;QD=1.84;ReadPosRankSum=-2.886;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr19	9025604	rs200791776	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=15.023;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-8.855;QD=2.17;ReadPosRankSum=-1.151;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:92,23:0.20:115
chr19	9025669	rs200046834	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.897;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=29.413;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-10.979;QD=0.82;ReadPosRankSum=-2.541;SOR=5.008;set=HC	GT:AD:AF:DP	0/1:122,12:0.09:134
chr19	9025671	.	G	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.312;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=29.395;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-10.937;QD=0.82;ReadPosRankSum=-3.001;SOR=4.974;set=HC	GT:AD:AF:DP	0/1:121,12:0.09:133
chr19	9025673	.	G	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.639;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=26.229;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-10.810;QD=0.85;ReadPosRankSum=-2.886;SOR=4.781;set=HC	GT:AD:AF:DP	0/1:120,11:0.08:131
chr19	9025676	.	GGC	G	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.384;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=25.985;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-10.629;QD=0.47;ReadPosRankSum=-2.965;SOR=4.606;set=HC	GT:AD:AF:DP	0/1:118,10:0.08:128
chr19	9027101	rs72486385	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr19	9028432	rs10411029	C	T	5582.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	9038597	rs12980941	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	9043347	rs10425275	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	9043534	rs35774058	A	AG	252.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr19	9043680	rs2059135	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	9045518	rs12984694	T	G	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	9046876	rs4804378	G	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr19	9047267	rs10410169	C	T	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:72,72:0.50:144
chr19	9047305	rs10415818	G	A	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:86,71:0.45:157
chr19	9048035	rs10417358	G	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr19	9048170	rs10417600	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr19	9048320	rs56334501	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr19	9048421	rs56194405	T	C	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:66,48:0.42:114
chr19	9049149	rs12461007	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:78,55:0.41:133
chr19	9049339	rs11883220	C	G	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	9049396	rs10425044	C	G	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:69,83:0.55:152
chr19	9049910	rs56307190	C	T	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:87,80:0.48:167
chr19	9056930	rs918535	T	G	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:67,105:0.61:172
chr19	9056941	rs10410136	A	G	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:73,115:0.61:188
chr19	9056989	rs4804381	C	G	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:110,82:0.43:192
chr19	9057408	rs1423051	A	G	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	9057687	rs1895364	A	G	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	9057704	rs12984130	G	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr19	9057721	rs2216662	C	T	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,64:0.50:128
chr19	9057750	rs12982113	T	A	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr19	9057896	rs12984471	G	C	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:92,106:0.54:198
chr19	9058624	rs11878666	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:87,68:0.44:155
chr19	9058942	rs1833778	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:85,69:0.45:154
chr19	9059232	rs12710265	T	C	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:95,153:0.62:248
chr19	9059808	rs7508222	A	G	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	9060059	rs12977368	A	C	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:83,86:0.51:169
chr19	9060085	rs4804382	C	T	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr19	9060125	rs12972088	G	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:81,81:0.50:162
chr19	9060541	rs11882256	C	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:99,66:0.40:165
chr19	9060572	rs56405542	G	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:81,46:0.36:127
chr19	9060605	rs2194168	G	A	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	9060812	rs1820099	T	C	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	9061559	rs1423052	C	G	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:95,87:0.48:182
chr19	9062415	rs12978757	T	G	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	9062544	rs2547063	T	G	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	9066259	rs17000770	T	C	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr19	9066874	rs12609150	G	T	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:91,75:0.45:166
chr19	9068990	rs35092547	G	T	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:59,100:0.63:159
chr19	9069792	rs1862458	G	A	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr19	9069892	rs1862460	A	C	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr19	9070194	rs1344572	A	G	10774.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	9070225	rs1559172	G	C	10071.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr19	9070402	rs12150888	G	T	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:32,77:0.71:109
chr19	9070837	rs2547067	G	A	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	9071763	rs10422567	T	A	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	9071834	rs17000803	G	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr19	9071916	rs35346115	G	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr19	9072221	rs66498329	G	A	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:90,40:0.31:130
chr19	9072296	rs7254970	G	T	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:37,58:0.61:95
chr19	9072875	rs73009098	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:77,55:0.42:132
chr19	9072975	rs17000816	G	A	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,71:0.47:150
chr19	9074073	rs72486387	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:95,47:0.33:142
chr19	9074265	rs10406209	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr19	9075346	rs2591592	T	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr19	9076800	.	G	C	1592.77	.	AC=1;AF=0.500;AN=2;DP=173;set=Intersection	GT:AD:AF:DP	0/1:100,72:0.42:172
chr19	9077581	rs73011014	G	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:71,47:0.40:118
chr19	9080336	rs36051496	AGG	A	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.736;QD=11.44;ReadPosRankSum=1.638;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	9080341	rs3964319	G	A	199.90	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=28.56;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	9080347	rs62682261	GA	G	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.792;QD=10.62;ReadPosRankSum=1.891;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	9080352	.	GA	G	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.792;QD=10.41;ReadPosRankSum=2.339;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	9080357	.	GA	G	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.162;QD=8.92;ReadPosRankSum=3.150;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	9080365	.	A	AGGG	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.359;QD=7.04;ReadPosRankSum=2.903;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	9080368	.	A	AG	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.359;QD=6.99;ReadPosRankSum=2.286;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	9080462	rs2547065	C	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr19	9083143	rs7245949	G	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:53,85:0.62:138
chr19	9083174	rs7245960	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,81:0.57:142
chr19	9083427	rs1609453	A	G	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr19	9083457	rs17000886	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr19	9084183	rs1609460	G	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	9084216	rs1609459	T	C	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:81,84:0.51:165
chr19	9084299	rs1609458	T	C	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	9085004	rs11085805	T	C	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:94,73:0.44:167
chr19	9085643	rs1574479	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr19	9086123	rs10402812	A	C	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,59:0.48:123
chr19	9086318	rs4520945	G	A	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:81,60:0.43:141
chr19	9086819	rs1823056	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:86,61:0.41:147
chr19	9087615	rs1596798	T	A	6363.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	9087758	rs12611293	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:113,76:0.40:189
chr19	9088017	rs1596797	T	G	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	9088330	rs17000947	G	A	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:104,86:0.45:190
chr19	9088772	rs17000950	T	C	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-0.502;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:63,40:0.39:103
chr19	9090531	rs12976721	T	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr19	9204307	rs4804097	A	G	12341.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr19	9204358	rs7259007	C	T	5388.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:308,262:0.46:570
chr19	9212864	rs4804399	A	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	9213026	rs4804400	T	C	3798.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:119,171:0.59:290
chr19	9213079	rs4804401	A	C	3840.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:122,166:0.58:288
chr19	9213132	rs12610094	A	G	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr19	9225287	rs28716093	C	T	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	9225940	rs7246969	G	A	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:116,102:0.47:218
chr19	9225973	rs7246980	G	A	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:120,81:0.40:201
chr19	9226017	rs2217657	C	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:119,76:0.39:195
chr19	9226265	rs75711758	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:81,48:0.37:129
chr19	9226540	rs36095111	A	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	9237746	rs369468829	TTTTC	T	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=1.086;QD=22.17;ReadPosRankSum=-1.097;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	9251304	rs74519977	G	A	2754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.475;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:127,141:0.53:268
chr19	9296471	.	A	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.000;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:105,22:0.17:127
chr19	9296664	rs56246934	T	C	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:81,128:0.61:209
chr19	9297381	rs61733545	A	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:67,108:0.62:175
chr19	9325116	rs5020278	G	A	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:139,177:0.56:316
chr19	9325252	rs61729907	G	A	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:102,137:0.57:239
chr19	9346055	rs116863072	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:92,88:0.49:180
chr19	9346403	rs118042782	T	A	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:150,190:0.56:340
chr19	9346427	rs1968136	T	C	8636.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	9346599	rs1985937	C	G	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	9361740	rs201985790	CT	C	854.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr19	9362343	rs2240927	C	T	4328.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:190,203:0.52:393
chr19	9362443	rs2240928	C	T	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:70,81:0.54:151
chr19	9362799	rs917707	T	G	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:47,79:0.63:126
chr19	9408811	rs55772378	AT	A	267.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.31;MQRankSum=0.809;QD=16.73;ReadPosRankSum=0.000;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr19	9434930	rs10411624	T	C	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	9435320	rs368039177	GA	G	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.825;QD=7.87;ReadPosRankSum=1.750;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr19	9448917	rs8113427	T	G	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	9449149	rs8110197	A	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	9449337	rs8110584	G	A	580.78	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr19	9452026	rs55837495	ACT	A	3742.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	9489132	rs2304110	C	T	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	9490358	rs12461520	C	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	9490814	rs2217652	C	T	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	9491210	rs1347165	C	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	9491606	.	G	C	1820.77	.	AC=1;AF=0.500;AN=2;DP=227;set=Intersection	GT:AD:AF:DP	0/1:139,88:0.39:227
chr19	9492141	rs3826783	C	T	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr19	9492370	rs2230752	A	T	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	9524185	rs2241356	A	G	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	9582092	rs3068759	TAAAA	T	650.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.28;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	9582164	rs5827059	G	GA	178.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	9641821	rs34198502	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr19	9646739	rs888872	C	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	9673271	rs147918159	CTCT	C	2084.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	9728629	rs140819781	T	C	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr19	9805397	rs77670201	A	G	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:108,121:0.53:229
chr19	9958878	rs2010457	A	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	9964823	rs8111802	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	9968139	rs11556087	G	A	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:144,121:0.46:265
chr19	9968434	rs2303100	C	T	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr19	10071063	rs10406152	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	10071634	rs918542	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr19	10077158	rs3745582	C	A	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:60,83:0.58:143
chr19	10077419	rs3745584	C	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.542;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:25,23:0.48:48
chr19	10077931	rs3786698	C	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr19	10078171	rs3074540	TCACA	T	1573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.79;ReadPosRankSum=0.450;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:9,39:0.81:48
chr19	10078208	rs2059144	C	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr19	10079013	rs3815747	G	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=9.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-2.056;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr19	10079093	rs3815746	C	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,72:0.51:141
chr19	10080133	.	AC	A	639.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr19	10080410	rs2277965	C	G	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:131,132:0.50:263
chr19	10080619	rs57674179	A	AG	847.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr19	10081276	rs1895371	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr19	10083510	rs33996380	CA	C	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.117;QD=7.99;ReadPosRankSum=0.628;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr19	10084292	rs2287813	C	G	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr19	10084422	rs2287812	C	T	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:139,135:0.49:274
chr19	10084551	rs2287811	T	G	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:170,144:0.46:314
chr19	10085054	rs3815745	G	A	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:106,168:0.61:274
chr19	10087200	rs2287810	C	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	10088271	rs2161468	C	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,40:0.45:88
chr19	10089262	rs12610207	G	A	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-0.793;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	10090634	rs12609337	A	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr19	10090649	rs11879687	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr19	10091267	rs144086896	A	ATCTC	843.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr19	10091294	rs71188870	TCA	T	977.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr19	10096650	rs1862474	T	C	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:56,79:0.59:135
chr19	10096686	rs1862473	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr19	10097187	rs60604169	G	GC	4497.73	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:159,176:0.53:335
chr19	10097443	rs111955359	T	TAA	664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.557;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.795;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:42,37:0.47:79
chr19	10097536	rs8113693	G	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	10097554	rs3214451	A	AG	258.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	10099744	rs11879755	C	T	2322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.43;ReadPosRankSum=-0.016;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:65,61:0.48:126
chr19	10099748	rs11883111	T	C	2303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=0.840;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:71,62:0.47:133
chr19	10099910	rs2287805	C	T	4025.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:213,198:0.48:411
chr19	10100061	rs2287804	C	A	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:163,182:0.53:345
chr19	10102567	rs7251453	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr19	10102676	rs7252953	A	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr19	10103583	rs2010448	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:82,66:0.45:148
chr19	10104154	rs2277964	G	T	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:102,95:0.48:197
chr19	10104272	rs2277963	G	C	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:99,116:0.54:215
chr19	10106671	rs3745592	C	G	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:124,118:0.49:242
chr19	10106936	rs1559186	G	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr19	10107455	rs139398421	A	AAG	501.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr19	10108714	rs7254800	G	A	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:219,234:0.52:453
chr19	10108929	rs3745596	C	T	905.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr19	10112091	rs113865073	C	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr19	10112346	rs2287803	T	C	10062.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	10114893	rs73007122	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	10116076	rs11085529	G	C	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	10116375	rs2303099	G	T	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:210,116:0.36:326
chr19	10116703	rs11085530	A	G	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:144,126:0.47:270
chr19	10127668	rs2233792	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	10129262	rs1644733	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	10131849	rs35664342	C	CT	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=9.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=1.013;SOR=0.034;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	10131866	rs2016307	A	T	907.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=7.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.13;ReadPosRankSum=0.875;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr19	10131999	rs1644731	T	C	3051.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:132,146:0.53:278
chr19	10149223	rs16997792	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	10157743	rs77259842	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr19	10165867	rs10425181	C	T	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:131,102:0.44:233
chr19	10165932	rs8113341	A	G	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:157,118:0.43:275
chr19	10166375	rs10403787	G	A	4760.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:274,230:0.46:504
chr19	10169208	rs17211059	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr19	10169477	rs11667515	G	A	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:97,97:0.50:194
chr19	10192425	rs112439574	G	GGAA	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.60;MQRankSum=2.086;QD=13.34;ReadPosRankSum=-0.114;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	10197479	.	C	CG	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.674;QD=2.90;ReadPosRankSum=-0.586;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr19	10218030	rs1551570	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	10218434	rs55752217	C	T	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	10218524	rs2305791	C	G	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	10221151	rs2305792	C	G	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	10222558	rs2010353	G	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	10224526	rs3745600	C	T	11169.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	10224539	.	C	T	4091.77	.	AC=1;AF=0.500;AN=2;DP=390;set=Intersection	GT:AD:AF:DP	0/1:202,186:0.48:388
chr19	10225777	rs7401	A	G	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	10226052	rs2305795	G	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	10226256	rs7710	A	G	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=23.80;SOR=3.977;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	10226340	rs71188883	GTGCC	G	11486.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	10229240	rs61403454	CA	C	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=1.052;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr19	10229297	rs11667630	C	A	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	10229521	rs2290687	C	T	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	10229726	rs149991692	TGGCAGTCCTCACTCACCTCCC	T	4586.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	10249003	.	C	T	904.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr19	10251747	rs2290684	A	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,42:0.40:106
chr19	10257245	rs2288349	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr19	10265248	rs2114724	T	C	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:100,96:0.49:196
chr19	10265312	rs721186	T	C	6731.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr19	10267077	rs2228611	T	C	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=6.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-2.157;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:52,50:0.49:102
chr19	10270746	rs3079962	GA	G	2011.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:95,126:0.57:221
chr19	10334443	rs2116941	A	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	10334663	rs2116942	T	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	10335552	rs56357614	G	T	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:116,155:0.57:271
chr19	10362882	rs2358580	G	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	10385743	rs5030352	C	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	10395683	rs5498	A	G	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr19	10395769	rs115766769	G	A	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:80,85:0.52:165
chr19	10402131	rs901886	T	C	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:90,101:0.53:191
chr19	10402938	rs1056538	G	A	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr19	10403368	rs2228615	G	A	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:154,176:0.53:330
chr19	10403947	rs2569702	T	C	1536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.094;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:64,74:0.54:138
chr19	10404227	rs2569703	C	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr19	10404519	rs17852402	G	A	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:74,89:0.55:163
chr19	10405906	rs34124276	C	CT	1247.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr19	10407169	rs710845	G	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.199;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr19	10416184	rs367750441	A	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:91,48:0.35:139
chr19	10418784	rs281416	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr19	10418838	rs35063123	G	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr19	10419468	rs55905227	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr19	10426024	rs1124765	T	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr19	10426422	rs378395	A	C	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:103,63:0.38:166
chr19	10426628	rs395782	T	C	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:134,98:0.42:232
chr19	10428790	rs12459144	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	10429120	rs281427	T	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	10431300	rs34942709	A	AG	1042.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-0.241;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:42,40:0.49:82
chr19	10432334	rs12983649	T	G	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:91,113:0.55:204
chr19	10439225	rs144646475	C	CA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=0.304;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	10441117	rs3181049	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr19	10444826	rs2278442	G	A	7870.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr19	10446568	rs2304237	T	C	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:63,106:0.63:169
chr19	10449252	rs7257871	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr19	10449358	rs7258015	T	C	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:73,71:0.49:144
chr19	10449392	rs2304240	A	G	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:82,87:0.51:169
chr19	10449665	rs3176768	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr19	10600615	.	CT	C	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.282;QD=7.88;ReadPosRankSum=1.707;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:29,31:0.52:60
chr19	10625067	rs6511701	A	C	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	10665691	rs10419405	T	C	2012.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.31;ReadPosRankSum=-0.627;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr19	10665691	.	TTGAC	CTGAC,CTGAT	652	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.04;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=42,13;NR=16,8;PP=652,320;QD=11.840882975;SC=CAACAAGAGGTTGACGGAGCC;SbPval=0.52;Source=Platypus;TC=59;TCF=43;TCR=16;TR=58,21;WE=10665703;WS=10665681;set=Platypus	GT:AF:DP	0/1:0.98:59
chr19	10665695	rs10413128	C	T	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-1.004;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr19	10665912	rs6146467	C	CCCGCCCTGCCCGCAGCGCACCTGGCT	7045.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	10666112	rs12459941	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr19	10668383	rs3745256	T	C	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:309,235:0.43:544
chr19	10668452	rs3745255	A	G	11004.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr19	10668673	rs1982074	A	G	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:115,120:0.51:235
chr19	10668953	rs875569	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr19	10669032	rs892084	T	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	10670184	rs3826709	C	G	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:122,144:0.54:266
chr19	10670451	rs11672122	T	C	3480.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:178,176:0.50:354
chr19	10670992	rs3745249	C	T	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:100,89:0.47:189
chr19	10671585	rs11672425	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr19	10671664	rs7259124	T	C	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:99,86:0.46:185
chr19	10673302	rs35523350	C	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr19	10676343	rs3745246	A	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:60,40:0.40:100
chr19	10676423	rs3745245	G	A	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=5.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=1.460;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:125,73:0.37:198
chr19	10676487	rs34864064	G	GCC	3069.73	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:236,117:0.33:353
chr19	10676681	rs3218222	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr19	10679067	rs33926515	GAGA	G	1236.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr19	10679240	rs1968445	C	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	10685859	rs1560712	G	C	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	10687757	rs7252007	T	C	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	10689518	rs73018654	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr19	10689710	.	T	C	187.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	10690321	rs73018660	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr19	10690557	rs10426276	G	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	10692000	rs1045361	T	C	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:61,84:0.58:145
chr19	10692117	rs2304161	T	C	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:116,152:0.57:268
chr19	10692129	rs2304160	G	A	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:120,158:0.57:278
chr19	10694239	rs11085739	A	G	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.15;ReadPosRankSum=1.681;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr19	10694244	rs11085740	C	T	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.15;ReadPosRankSum=0.014;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chr19	10697773	rs75323740	A	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:151,81:0.35:232
chr19	10697801	rs75192074	G	T	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:199,124:0.38:323
chr19	10738639	rs3087969	C	T	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	10741622	rs12710257	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	10741681	rs60016481	C	CA	764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.460;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:46,57:0.55:103
chr19	10741907	rs12972963	A	G	17180.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr19	10742170	rs2288904	A	G	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	10742287	rs1560711	C	T	6115.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	10742443	rs1560710	C	T	9354.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	10742463	rs1560709	G	T	10129.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	10745764	rs2163832	T	C	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr19	10748295	rs79521494	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr19	10748820	rs3859514	T	C	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:86,97:0.53:183
chr19	10751769	rs111569642	G	GA,GAA	908.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.25;MQRankSum=0.642;QD=22.72;ReadPosRankSum=-0.771;SOR=0.556;set=HC	GT:AD:AF:DP	1/2:3,14,23:0.35,0.57:40
chr19	10751886	rs144166933	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;MQ=60.98;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr19	10752252	rs79290735	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.423;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.944;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	10752968	rs10405617	A	G	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	10753818	rs142310767	TGCCCCTCTCTG	T	484.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	10789635	rs75276308	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr19	10793749	rs2738039	A	G	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	10794630	rs2229383	G	T	4696.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:147,208:0.59:355
chr19	10794793	rs892087	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr19	10818092	rs892085	G	A	3905.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:153,174:0.53:327
chr19	10824435	rs35323929	CT	C	221.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-2.287;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr19	10829201	rs116956287	C	A	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	10883126	rs3826803	C	G	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.443;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:61,64:0.51:125
chr19	10883157	rs148790687	C	T	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=1.487;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:92,80:0.47:172
chr19	10890948	.	G	A	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-0.742;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:29,49:0.63:78
chr19	10912831	.	C	T	445.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	10916684	rs2287029	C	T	3316.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:158,159:0.50:317
chr19	10927973	.	T	C	195.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	10970558	rs8100581	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	11038843	rs892010	G	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	11099924	.	GC	AT	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.253;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=1.064;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr19	11136304	rs186362541	T	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:36,66:0.65:102
chr19	11151954	rs200002796	G	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr19	11168896	rs8104480	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr19	11170839	rs7275	T	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr19	11221454	rs2738442	T	C	11284.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr19	11227554	rs1799898	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr19	11230650	rs145643854	GAAAC	G	1069.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.919;QD=16.46;ReadPosRankSum=-0.403;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr19	11238473	rs2738459	A	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr19	11238548	rs2569538	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:76,46:0.38:122
chr19	11242307	rs2738464	G	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.73;ReadPosRankSum=0.908;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	11257756	.	CAAA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.372;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr19	11258584	.	C	CA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.633;QD=1.61;ReadPosRankSum=1.949;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr19	11266584	rs892114	A	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr19	11285390	rs440677	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	11303459	rs35706290	GC	G	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-0.793;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	11314807	rs3217390	CTGGGGATGAGGAG	C	1272.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	11319491	rs8409	G	A	10048.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr19	11324890	rs12609620	T	C	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	11325417	rs2163830	A	G	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	11325924	rs11673129	C	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	11326119	rs2304155	A	G	13532.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	11326125	rs2304154	C	T	13437.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr19	11326629	rs10403991	C	A	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	11327571	rs4804150	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:68,38:0.36:106
chr19	11327608	rs4804151	T	C	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	11327626	rs4804152	A	G	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	11332505	rs3826815	C	T	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:139,110:0.44:249
chr19	11332570	rs3810307	T	A	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:156,147:0.49:303
chr19	11333358	rs12971537	GA	TT	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;JOINED;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	11333596	rs3810308	T	C	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:66,101:0.60:167
chr19	11343795	rs17699089	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr19	11344188	.	G	A	347.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr19	11346155	rs56322906	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr19	11346252	rs6511729	A	C	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr19	11347493	rs737337	T	C	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:167,116:0.41:283
chr19	11347657	rs737338	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr19	11348521	rs3745683	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr19	11350340	rs892066	C	G	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:99,103:0.51:202
chr19	11350488	rs2278426	C	T	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:57,80:0.58:137
chr19	11358799	rs12978266	G	A	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	11361521	rs371101175	T	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr19	11362974	rs150130312	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,34:0.35:98
chr19	11363146	rs8113582	A	T	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	11406839	rs453766	C	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	11406952	rs374409	A	G	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	11409061	rs377665	C	T	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	11409494	rs423304	G	A	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	11409684	rs422496	A	G	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,154:0.99:156
chr19	11411868	rs420703	C	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	11417200	rs322151	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr19	11436302	rs56363898	A	AG	1620.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	11446520	rs3816864	T	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	11448153	.	C	T	572.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr19	11459260	rs12976608	T	C	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	11464003	rs12975236	C	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	11465129	rs7251786	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	11465316	rs6887	G	C	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	11474507	rs374338591	C	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:60,70:0.54:130
chr19	11495382	.	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.748;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	11526759	rs160838	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,37:0.48:77
chr19	11526765	rs167479	G	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr19	11529958	rs1549168	C	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	11534503	rs57892201	TG	T	1152.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:3,48:0.94:51
chr19	11541685	rs34095	G	A	10699.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr19	11541712	rs34094	T	C	8645.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	11558240	rs186375	T	C	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:190,128:0.40:318
chr19	11565264	.	TTC	T	121	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=4;HapScore=1;MGOF=19;MMLQ=23;MQ=58.73;NF=9;NR=1;PP=121;QD=12.8;SC=CTTGGGCCCCTTCTCTCTCTC;SbPval=0.79;Source=Platypus;TC=34;TCF=29;TCR=5;TR=10;WE=11565273;WS=11565254;set=Platypus	GT:AD:AF:DP	0/1:24,10:0.29:34
chr19	11624491	rs4804168	C	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr19	11664636	rs138057931	T	C	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:227,229:0.50:456
chr19	11688200	rs2071485	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr19	11708361	rs11551815	C	T	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,72:0.62:116
chr19	11708464	rs72997090	G	C	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:85,101:0.54:186
chr19	11725761	rs5827132	AT	A	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.51;ReadPosRankSum=1.470;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	11725823	rs1969533	A	G	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.12;ReadPosRankSum=0.472;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	11725826	rs3923752	A	G	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.13;ReadPosRankSum=-0.166;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr19	11727384	rs4411616	G	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	11727503	rs4545929	T	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr19	11728802	rs4804611	A	G	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr19	11795897	rs286298	C	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr19	11796869	rs286299	G	T	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:64,65:0.50:129
chr19	11849637	.	C	T	2318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.383;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:124,114:0.48:238
chr19	11849736	rs72986630	C	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:72,59:0.45:131
chr19	11878095	rs384148	T	G	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,70:0.49:142
chr19	11889347	rs371134	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr19	11891003	rs799193	G	A	2075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-0.690;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:85,97:0.53:182
chr19	11918093	rs71166630	AT	A	534.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr19	11941221	rs424132	T	A	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:118,134:0.53:252
chr19	11941256	rs421355	A	G	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:93,109:0.54:202
chr19	11941363	rs2545810	G	A	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr19	11941532	rs35392612	C	G	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;MQ=59.84;set=Intersection	GT:AD:AF:DP	0/1:50,65:0.57:115
chr19	11941617	rs410885	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr19	11942362	rs427880	A	G	6087.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:204,266:0.57:470
chr19	11942615	rs394416	A	C	4042.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:104,165:0.61:269
chr19	11942771	rs436411	G	A	4034.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:156,192:0.55:348
chr19	11943697	rs400106	G	A	3078.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:117,142:0.55:259
chr19	11943713	rs56167415	G	A	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:115,138:0.55:253
chr19	11943823	rs375049	G	A	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:63,105:0.62:168
chr19	11943852	rs3745669	T	C	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:75,100:0.57:175
chr19	11977572	rs11671596	G	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	11979164	rs10500209	T	C	5526.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:273,267:0.49:540
chr19	12024208	rs34363657	C	CT	477.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=11.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-1.674;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr19	12058536	rs4804175	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	12128613	.	C	CT	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=3.831;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	12145874	rs73000434	G	A	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	12157334	rs4804176	T	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	12186021	rs145705131	TAATAA	T	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=2.214;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	12191161	.	CA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=-0.582;QD=1.19;ReadPosRankSum=-0.394;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr19	12204632	rs199664949	G	GT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.776;QD=1.31;ReadPosRankSum=-1.501;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr19	12222381	rs1866382	C	G	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	12491302	rs145317058	TTTC	T	16471.73	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr19	12491498	rs4804664	C	T	13283.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr19	12491639	rs59301182	A	G	24633.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr19	12491654	rs57371898	C	T	24422.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr19	12491779	rs17706075	T	C	12615.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;MQ=59.84;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr19	12491949	rs11668955	T	C	10914.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	12491955	rs11668074	A	C	10735.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=1.241;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	12492036	rs10417283	A	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=1.311;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	12492039	rs10414984	G	T	7405.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.301;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	12494612	rs10418011	T	C	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	12494621	rs10412448	A	G	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=2.794;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	12502457	rs4804669	A	G	12849.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr19	12541532	rs10422063	C	A	18552.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr19	12541547	rs10402252	T	G	18941.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr19	12542772	rs1134389	C	T	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	12542848	rs4804692	G	C	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.96;QD=43.64;SOR=4.133;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	12542851	rs4804693	AT	GC	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.96;QD=45.00;SOR=4.003;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	12542891	rs140908232	G	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.05;QD=31.03;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	12542904	rs78266625	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.81;QD=31.99;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	12543333	rs3979432	C	T	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	12551616	rs35084134	C	G	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	12551715	rs11881297	A	C	11832.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr19	12574740	rs3071438	CA	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-0.404;SOR=2.560;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr19	12576049	rs7259240	G	A	6621.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	12576573	rs10404972	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	12659875	rs146138143	C	CCATA	309.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;MQ=61.19;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	12661335	rs2861411	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	12662318	rs79749579	G	GC	6471.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	12692001	rs3745651	G	A	7395.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	12694089	rs12461643	T	G	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	12707904	rs1864082	T	C	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	12707978	rs1864081	G	A	7382.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr19	12720631	rs8100964	C	T	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	12760287	rs12984441	A	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=27.31;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	12760664	rs3815914	T	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	12763350	rs71168621	C	CT	312.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.788;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.606;QD=12.49;ReadPosRankSum=0.135;SOR=0.111;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr19	12768391	rs73002392	G	A	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	12768843	rs34324185	G	T	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr19	12772090	rs1133330	C	T	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	12772165	rs1054487	G	A	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	12772263	rs2303731	T	C	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	12774208	rs1054486	G	C	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:197,121:0.38:318
chr19	12787002	rs34820996	G	GAGAC	1793.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	12810279	rs9467	A	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.278;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	12832035	.	AGGC	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=4.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.244;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:43,6:0.12:49
chr19	12876278	rs1205169	C	A	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	12876964	rs897804	G	C	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	12911285	rs10427027	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	12917761	rs55668927	A	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	12939792	rs1466306	T	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.572;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr19	12958360	rs2290689	T	C	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:113,84:0.43:197
chr19	12958697	rs2290688	T	C	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:91,77:0.46:168
chr19	12962648	rs7250751	A	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr19	12963143	rs1078264	T	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:47,81:0.63:128
chr19	12975599	rs2242512	G	A	2296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=1.150;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:40,58:0.59:98
chr19	12975608	rs7256794	T	C	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.49;ReadPosRankSum=2.945;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:54,65:0.55:119
chr19	12976481	rs150724539	AAAC	A	2092.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=-0.319;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:69,56:0.45:125
chr19	12978917	.	A	ATTTTT	217.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=-0.000;DP=50;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.61;ReadPosRankSum=0.601;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	12985576	rs11085822	A	G	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:248,172:0.41:420
chr19	12985632	.	C	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DP=365;ExcessHet=3.0103;FS=2.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.971;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:322,43:0.12:365
chr19	12996500	rs2072596	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr19	12996740	rs2072597	A	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:84,62:0.42:146
chr19	13002384	rs3745647	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr19	13002563	rs2242517	T	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	13010520	rs8012	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr19	13029188	rs2965214	G	A	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	13030939	.	AT	ACACACACACACACT,ACACACACACACACACACACT,A	1216.73	.	AC=1,1,0;AF=0.500,0.500,0.00;ALERT;AN=2;DP=21;set=Intersection	GT:AF:DP	1/2:0.33,0.67:9
chr19	13030940	rs8104603	T	A	1253.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=39.18;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	13031210	rs2967897	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	13035638	rs8107173	A	G	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:171,120:0.41:291
chr19	13039284	rs2293683	A	G	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr19	13044544	rs2974750	C	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.27;SOR=2.342;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	13059147	rs11558955	A	G	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:283,198:0.41:481
chr19	13081089	rs11670895	G	A	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:52,75:0.59:127
chr19	13212025	rs12151248	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	13220676	rs10414282	G	A	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:181,123:0.40:304
chr19	13226433	rs202088629	GC	G	801.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr19	13248288	rs189998121	C	T	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:107,142:0.57:249
chr19	13249244	rs8112067	A	G	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	13255536	rs2304095	T	C	7351.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr19	13260240	.	A	AAAG	919.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.38;MQRankSum=0.180;QD=22.43;ReadPosRankSum=-0.366;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:3,38:0.93:41
chr19	13317490	rs143342886	GTTA	G	1430.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr19	13318672	.	CCTGCTGCTGCTGCTGCTG	C,CCTGCTGCTGCTGCTG	486.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;QD=34.77;SOR=1.765;set=HC	GT:AD:AF:DP	1/2:0,9,5:0.64,0.36:14
chr19	13319693	rs16051	A	G	1626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.725;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.941;QD=12.14;ReadPosRankSum=-0.867;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:64,70:0.52:134
chr19	13319989	rs10413221	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	13320002	rs2304093	C	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr19	13322822	rs3217380	AG	A	1703.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	13323124	rs16048	T	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:3,106:0.97:109
chr19	13323641	rs140435495	T	TACACAC	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	13335432	rs3816027	G	A	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.900;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:65,64:0.50:129
chr19	13338180	rs143245670	AAAG	A	598.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-0.636;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:43,42:0.49:85
chr19	13339405	rs34941295	TAG	T	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=0.795;SOR=2.613;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr19	13339417	rs36088930	GAGAT	G	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.145;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr19	13339673	rs17846918	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr19	13345657	rs3765012	C	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr19	13355900	rs16039	T	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	13356150	rs16035	T	G	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:83,72:0.46:155
chr19	13364012	rs8103699	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr19	13373477	rs16031	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	13411482	rs16018	G	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr19	13443770	rs16008	T	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:58,95:0.62:153
chr19	13445144	rs2306348	C	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	13445208	rs2248069	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr19	13445371	rs199586393	GTGTT	G	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.80;ReadPosRankSum=-0.053;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	13445407	rs138143360	TTGTG	T	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.86;ReadPosRankSum=-1.200;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	13563857	rs55839906	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,56:0.47:120
chr19	13563952	rs3764615	C	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr19	13875539	.	AGCGGGGCGGCGGGGCGGCGGGGCG	A	942	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=1;MGOF=20;MMLQ=19;MQ=57.34;NF=2;NR=0;PP=942;QD=476.0;SC=ATGAAGGTGCAGCGGGGCGGC;SbPval=0.2;Source=Platypus;TC=9;TCF=4;TCR=5;TR=2;WE=13875570;WS=13875529;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr19	13879622	rs346152	T	C	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr19	13883099	rs1469071	A	G	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:153,123:0.45:276
chr19	13899041	.	CTTTTTTTT	C,CTTTTTT	716.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=6.021;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.385;QD=25.60;ReadPosRankSum=0.991;SOR=2.315;set=HC	GT:AD:AF:DP	1/2:1,15,12:0.54,0.43:28
chr19	13899980	rs4926171	A	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr19	13900059	rs62111900	A	G	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-1.343;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	14040896	rs11669628	G	A	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:116,143:0.55:259
chr19	14045033	rs2305779	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	14045311	.	A	AGTGT	60.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr19	14048587	rs55873182	G	C	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:152,133:0.47:285
chr19	14063806	rs67764456	T	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr19	14065074	rs55681834	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr19	14065341	rs10409785	T	C	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.625;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=2.489;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:144,107:0.43:251
chr19	14065488	rs1056143	A	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:81,53:0.40:134
chr19	14065534	rs1056142	A	C	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	14070706	rs141180609	A	AGGTGGGCCCAGGGCGGGCAG	4492.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=59.11;SOR=3.855;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	14083761	rs2305780	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr19	14091543	rs146048336	T	TGCATCCTCTCTGGGGTGGGCTC	3303.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	14092911	rs3816553	G	A	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:159,127:0.44:286
chr19	14104251	rs12459114	G	A	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	14139004	rs1982632	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	14143446	.	C	CA	99	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=0.7986;HP=21;HapScore=3;MGOF=15;MMLQ=15;MQ=61.53;NF=1;NR=6;PP=99;QD=14.5714285714;SC=ACTAAAAATACAAAAAAAAAA;SbPval=0.82;Source=Platypus;TC=9;TCF=2;TCR=7;TR=7;WE=14143455;WS=14143436;set=Platypus	GT:AD:AF:DP	1/1:2,7:0.78:9
chr19	14165204	rs75389771	G	C	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:330,202:0.38:532
chr19	14200896	.	C	CG	79	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=24;MQ=61.12;NF=3;NR=0;PP=79;QD=33.3333333333;SC=TGTGGCGGCGCCGGCGGGGCC;SbPval=1.0;Source=Platypus;TC=5;TCF=4;TCR=1;TR=3;WE=14200904;WS=14200886;set=Platypus	GT:AD:AF:DP	1/1:2,3:0.60:5
chr19	14294288	rs61051191	GC	G	3749.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	14301821	rs35845368	A	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=52.53;MQRankSum=-0.582;QD=9.74;ReadPosRankSum=0.076;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr19	14492219	rs28366013	C	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr19	14492265	rs2302997	T	C	2710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-3.382;QD=15.85;ReadPosRankSum=0.091;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:99,72:0.42:171
chr19	14492272	rs2302996	T	C	2838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-3.360;QD=15.02;ReadPosRankSum=-0.236;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:109,80:0.42:189
chr19	14499357	rs2302094	T	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	14499410	rs2302092	G	C	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	14499450	rs35363541	C	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr19	14508223	rs10412108	A	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	14508385	rs10410071	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	14508964	rs7508244	T	C	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr19	14522434	rs55968966	GCCTTA	G	20940.73	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr19	14561722	rs8107892	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	14580635	rs74889788	G	A	8055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.54;ReadPosRankSum=0.136;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:171,203:0.54:374
chr19	14580638	rs78858120	T	C	8134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.81;ReadPosRankSum=-0.010;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:170,203:0.54:373
chr19	14580662	rs74564226	G	A	7666.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:176,213:0.55:389
chr19	14580865	rs79441155	G	T	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr19	14581063	rs1042728	A	G	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:74,109:0.60:183
chr19	14581756	rs59891980	TGCCTCAAGGGCCTCGTTGC	T	2306.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	14582468	rs10846	G	A	5035.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:265,254:0.49:519
chr19	14583264	rs2241363	G	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr19	14590142	rs138580153	TGACAAGAGTGA	T	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	14590236	rs3815715	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	14590279	rs45458894	G	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr19	14590433	rs45621333	A	G	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.917;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr19	14627050	rs4926222	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr19	14627215	rs8112776	T	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr19	14674235	rs891089	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr19	14693777	rs151002834	A	ATG	140.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr19	14694417	rs6511941	T	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr19	14698649	rs34955132	G	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr19	14703150	rs150637944	A	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr19	14703299	rs28736680	A	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr19	14705499	rs34335847	G	A	4630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=1.418;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:106,124:0.54:230
chr19	14705509	rs35049360	T	C	4585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=1.996;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:100,120:0.55:220
chr19	14706278	rs74182231	C	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr19	14717791	rs10409868	A	G	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	14719854	rs10404194	T	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.88;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	14719854	.	TACCC	CACCC,CACCT	487	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=20;MQ=60.0;NF=38,13;NR=23,6;PP=487,178;QD=8.5536264352;SC=TCAGGTGATCTACCCGTCTTG;SbPval=0.53;Source=Platypus;TC=62;TCF=39;TCR=23;TR=61,19;WE=14719866;WS=14719844;set=Platypus	GT:AF:DP	0/1:0.98:62
chr19	14719858	rs145155710	C	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.301;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.794;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr19	14720047	rs114494100	C	T	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	14730109	rs2482	C	T	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	14740824	rs77548886	A	AG	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	14743562	rs10405678	C	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	14744181	rs899217	T	A	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	14752325	rs8102646	C	T	8344.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	14758168	rs34226397	G	A	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.261;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:29,41:0.59:70
chr19	14769207	rs4488589	G	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.159;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr19	14769339	rs4606855	C	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr19	14772878	rs61729084	C	T	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:80,122:0.60:202
chr19	14772984	rs8111916	G	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	14779550	rs4239642	C	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	14804183	rs10407394	A	G	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-0.672;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,48:0.63:76
chr19	14805719	rs3850141	T	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr19	14806017	rs3813144	G	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr19	14806551	rs28575925	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr19	14816794	rs10410458	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr19	14817145	rs4809215	G	T	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr19	14817548	rs6511961	T	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr19	14819310	rs34925577	C	CAG	741.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr19	14826849	rs4078586	T	C	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:60,85:0.59:145
chr19	14827076	.	C	CT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.937;QD=0.96;ReadPosRankSum=1.720;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:120,28:0.19:148
chr19	14827830	rs3885179	C	A	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.316;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:67,89:0.57:156
chr19	14846897	rs1859257	T	A	8667.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr19	14847013	rs1859258	G	C	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr19	14856949	rs2732788	C	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	14857202	rs2013702	T	TC	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	14857791	rs34186967	T	TA	1776.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	14862430	rs2524383	C	G	10200.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	14862555	rs2524384	T	A	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	14863219	rs375427337	TGAGGTGCTGGTGTTCTG	T	5628.73	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:128,146:0.53:274
chr19	14866974	rs2253472	T	C	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	14867186	rs2524386	G	A	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	14876483	rs112937438	G	A	1777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-0.937;QD=3.17;ReadPosRankSum=-0.120;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:426,134:0.24:560
chr19	14876693	rs377051619	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.869;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=10.695;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-4.378;QD=0.92;ReadPosRankSum=-1.181;SOR=3.070;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr19	14876867	rs118058123	C	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr19	14877630	rs6511971	T	A	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr19	14883330	rs2302089	A	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr19	14884642	rs140982443	T	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr19	14884651	rs146246294	T	TAAGG	1449.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr19	14884751	rs78992533	G	A	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:96,107:0.53:203
chr19	14884841	rs41360944	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,69:0.46:151
chr19	14884946	rs2302090	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr19	14887596	rs2286362	A	G	4956.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:199,231:0.54:430
chr19	14910438	rs10415312	C	T	9649.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr19	14910573	rs10415562	C	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:116,99:0.46:215
chr19	14952706	rs141373725	CAG	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=6.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.104;SOR=1.819;set=HC	GT:AD:AF:DP	0/1:75,13:0.15:88
chr19	15052983	rs3044711	T	TATC	12777.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	15060983	rs5827264	TG	T	219.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	15064065	rs10417793	A	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	15064858	rs2269913	A	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr19	15065169	rs757465	T	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=0.811;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr19	15065171	rs2269914	G	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=2.237;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr19	15072787	rs3827000	A	T	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr19	15075020	rs10407669	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr19	15078986	rs2097836	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=0.996;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	15078986	.	CG	TA	282	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=28;MQ=60.0;NF=5;NR=3;PP=282;QD=41.9334843578;SC=TAGAAGTGCCCGTCTCTGCTC;SbPval=0.23;Source=Platypus;TC=19;TCF=15;TCR=4;TR=8;WE=15078995;WS=15078976;set=Platypus	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	15078987	rs2097837	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=1.244;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	15079104	rs11668879	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr19	15083693	rs3746295	C	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr19	15121390	rs78628129	A	C	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr19	15122045	rs35647251	C	A	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:69,87:0.56:156
chr19	15124474	rs11085935	C	T	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.563;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:31,40:0.56:71
chr19	15131213	rs7248834	G	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	15131261	rs4405675	C	T	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	15131330	rs35352238	G	A	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.166;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:58,51:0.47:109
chr19	15131512	rs187938143	G	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr19	15132574	rs757463	C	G	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	15133762	rs8111625	G	C	12470.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.99;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr19	15133787	rs10424547	C	A	2652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=1.621;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:231,150:0.39:381
chr19	15133926	rs8112667	C	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr19	15165818	rs3181162	A	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	15166997	rs11574685	C	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	15198263	rs8105277	A	G	13802.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr19	15198292	rs8104843	C	G	13929.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr19	15198507	rs8108721	T	C	11914.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr19	15198631	rs8105737	A	C	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	15198764	rs12975625	T	C	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	15223466	rs4808977	A	G	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	15224225	rs8109071	G	C	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	15224265	rs8109089	G	C	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	15226611	rs2074261	C	A	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	15226970	rs2074262	G	A	4821.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:173,215:0.55:388
chr19	15227030	rs2074263	G	A	15205.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr19	15227798	rs12972958	G	C	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	15233581	rs2074265	C	A	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:90,107:0.54:197
chr19	15233631	rs2074266	G	A	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:109,124:0.53:233
chr19	15235932	rs4141356	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	15271771	rs1044009	G	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.465;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.179;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:54,50:0.48:104
chr19	15273221	rs757472	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	15273231	rs4809028	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.63;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	15273248	rs4809029	A	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	15273381	rs4809030	A	G	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	15276007	rs2886698	C	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	15276055	rs2074617	C	G	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	15276143	rs2074618	C	T	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	15276919	rs2074619	G	A	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=1.388;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	15276923	rs10416777	C	T	7301.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.398;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	15277006	rs45591935	T	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=3.830;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	15277009	rs62113791	CA	TG	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=3.745;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	15277938	rs1548554	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	15278057	rs1548555	A	G	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	15281386	rs2074620	C	A	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:109,94:0.46:203
chr19	15281459	rs56277836	C	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr19	15285052	rs1044006	T	C	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	15285272	rs10422818	T	C	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	15289613	rs11670823	A	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	15290125	rs56061231	G	A	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:136,85:0.38:221
chr19	15290412	rs2074621	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,42:0.42:99
chr19	15292088	rs7257550	G	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	15292366	rs11669982	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	15292437	rs1043997	T	C	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	15294991	rs2074616	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	15295134	rs1043996	G	A	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:91,82:0.47:173
chr19	15300069	rs10423702	T	C	12715.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr19	15302844	rs1043994	T	C	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	15303225	rs3815188	G	A	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:68,128:0.65:196
chr19	15350594	rs11669901	G	A	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	15366010	rs34027119	A	AG	276	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.577;QD=21.23;ReadPosRankSum=1.598;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr19	15378434	rs139141985	GCCAC	G	2393.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	15383582	rs34855805	C	A	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	15483751	rs144582281	C	T	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:115,85:0.42:200
chr19	15508362	rs2058322	G	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	15563386	.	TGG	T,TG	419.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=0.653;SOR=3.014;set=HC	GT:AD:AF:DP	1/2:4,9,12:0.36,0.48:25
chr19	15580290	rs36020076	G	A	1893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=3.396;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:85,93:0.52:178
chr19	15580658	rs2304200	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr19	15582863	rs34440547	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr19	15586672	rs892145	A	T	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.333;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:107,83:0.44:190
chr19	15587185	rs733731	C	T	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:202,155:0.43:357
chr19	15587345	rs3813135	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr19	15651539	rs201608860	GCC	G	3498.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	15651548	rs372183725	AAT	A	3509.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.43;SOR=4.033;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	15651551	rs372614865	T	G	3346.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=4.033;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	15651553	rs62113202	C	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=4.033;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	15651556	.	G	GAGC	3292.73	.	AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=45.73;SOR=3.973;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	15651560	rs62113205	C	G	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=45.26;SOR=4.014;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	15651562	rs139932061	CG	C	2887.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	15651564	rs60465772	A	T	2896.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=44.57;SOR=4.014;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	15651568	rs55832992	C	A	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=45.27;SOR=3.877;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	15658803	.	AGAGGGAGAGAGT	A	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.56;MQRankSum=0.000;QD=6.09;ReadPosRankSum=0.882;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr19	15726487	rs4646523	G	T	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:79,123:0.61:202
chr19	15726560	rs73001907	G	T	5159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=0.682;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:171,242:0.59:413
chr19	15726721	rs148338083	A	AACTCACTCATTCCTCTGATC	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.877;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.268;QD=13.28;ReadPosRankSum=-0.958;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	15729056	rs714772	C	G	5500.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:236,259:0.52:495
chr19	15730498	rs55848814	G	GC	3990.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	15730606	rs28669833	C	T	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr19	15734326	.	TTTAGAGGTGATTGCATAGAAAGCTTCCTGGGAAGAACAAACAGGAGGTCGGAAGGAAGCATG	T	1322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=17.40;ReadPosRankSum=0.474;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr19	15739084	rs4239613	T	C	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:92,82:0.47:174
chr19	15739315	rs2056821	T	C	5435.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:218,239:0.52:457
chr19	15739597	rs2056822	A	C	4648.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:193,227:0.54:420
chr19	15739992	rs2239366	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	15740220	rs4239614	C	T	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:130,181:0.58:311
chr19	15740268	rs2239367	C	G	3302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.29;ReadPosRankSum=-0.922;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:50,86:0.63:136
chr19	15740275	rs2283605	G	A	3197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=-1.066;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:47,80:0.63:127
chr19	15754893	rs2203998	A	G	13169.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr19	15754975	rs2203999	C	T	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	15757927	rs1290626	T	C	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	15760213	rs2283612	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:81,61:0.43:142
chr19	15760881	rs1805040	C	A	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:137,102:0.43:239
chr19	15763721	rs1805042	G	A	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	15769253	rs4646513	C	A	8785.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr19	15769270	rs4646514	A	C	8657.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr19	15769379	rs4646515	G	C	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr19	15769449	rs4646516	A	G	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	15769478	rs4646517	C	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr19	15769529	rs4646518	GC	TT	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	15769625	rs1915390	A	G	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.91;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	15769664	rs7247021	A	G	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.858;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:55,42:0.43:97
chr19	15769775	rs4646520	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	15769805	rs10404163	A	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	15769992	rs2460817	A	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.40;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	15770027	rs55876862	A	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.81;QD=28.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	15784061	rs7254013	C	A	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	15784116	rs7253210	G	A	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	15784167	rs7254627	A	G	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	15784195	rs10414690	G	C	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	15784200	rs55794585	C	T	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	15784214	rs56398124	C	T	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	15784285	rs56205003	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	15784319	rs56124328	G	T	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	15784377	rs16995376	C	T	7523.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	15784386	rs16995378	C	T	8031.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.83;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	15784617	.	A	G	2326	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=26;MMLQ=26;MQ=59.96;NF=38;NR=79;PP=2326;QD=20.1775317312;SC=TCAGTGAGCTAGGTATTGATG;SbPval=0.56;Source=Platypus;TC=118;TCF=39;TCR=79;TR=117;WE=15784625;WS=15784607;set=Platypus	GT:AD:AF:DP	1/1:1,117:0.99:118
chr19	15784660	.	A	G	1386	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=54;MMLQ=28;MQ=59.62;NF=12;NR=49;PP=1386;QD=23.2913313532;SC=GAGAAGCAAGAGAGATGGCTC;SbPval=0.54;Source=Platypus;TC=61;TCF=12;TCR=49;TR=61;WE=15784668;WS=15784650;set=Platypus	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	15789034	rs28416595	C	A	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.256;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	15789098	rs609636	A	G	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	15789140	rs609290	A	G	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	15791180	rs8100667	C	T	7938.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	15793069	rs10415700	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	15793235	rs2285888	T	C	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	15795842	rs2018030	C	T	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	15806703	rs695149	A	C	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	15807062	rs687774	C	T	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	15807157	rs688231	A	G	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	15807175	rs688256	G	C	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	15807212	rs596252	T	G	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	15807305	rs688755	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.48;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	15807830	rs593421	T	C	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	15807884	rs593818	A	G	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	15807984	rs594255	G	A	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	15838972	rs4569397	T	A	8001.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	15839081	rs2067083	C	T	7908.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:8,293:0.97:301
chr19	15839910	rs10426009	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	15852223	rs1966357	A	C	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	15852363	rs11670007	G	A	11274.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr19	15852544	rs11670326	C	T	7320.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	15853150	rs16980824	C	T	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	15881751	rs8112713	A	C	8086.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	15881953	rs4807986	A	G	7116.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	15884810	rs10421246	A	T	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	15890388	rs7259595	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	15890517	rs11669449	A	C	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	15890625	rs11673423	C	G	6471.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	15890771	rs56317414	T	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	15890777	rs55926517	G	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	15890800	rs56180406	A	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	15905661	rs67455341	C	A	8283.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr19	15918380	rs28426969	C	T	7693.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr19	15918647	rs4081570	G	T	2980.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.14;MQRankSum=-1.991;QD=31.38;ReadPosRankSum=0.823;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:1,94:0.99:95
chr19	15932941	rs3761012	A	G	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	15933059	rs3761013	A	G	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	15933155	rs367984219	A	AT	493.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	15934599	rs2285881	C	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	15934656	rs10411865	A	G	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	15989730	rs4020346	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=12.194;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-6.602;QD=1.03;ReadPosRankSum=1.064;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:70,14:0.17:84
chr19	15989857	rs376410257	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-2.137;QD=3.04;ReadPosRankSum=0.233;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr19	15990048	rs3093198	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr19	16001215	rs3093153	C	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,87:0.48:180
chr19	16024436	rs45599331	A	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr19	16024538	rs1060467	A	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=31.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.530;SOR=4.271;set=HC	GT:AD:AF:DP	0/1:74,63:0.46:137
chr19	16024662	rs1064796	G	C	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	16025176	rs1060463	C	T	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	16025312	rs12985248	T	G	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	16033379	rs4808409	G	T	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	16034714	rs8104361	A	G	11883.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr19	16035517	rs3746156	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	16038334	rs2219358	G	A	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	16038390	rs2305803	G	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	16040292	rs3765070	A	G	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	16040473	rs4808414	T	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	16045141	rs2305801	T	C	7796.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	16045294	rs2305800	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	16060021	rs16980821	C	T	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:271,211:0.44:482
chr19	16060117	rs16980994	C	A	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:189,132:0.41:321
chr19	16060248	rs16980822	A	G	2830.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:160,139:0.46:299
chr19	16060658	rs11880184	A	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr19	16060827	rs1594685	T	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	16130451	rs11283334	A	ATGGCCCTCC	219.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	16130594	rs11669662	G	C	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=0.282;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:60,33:0.35:93
chr19	16130604	rs7250074	T	C	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.44;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	16131679	rs757545	T	C	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	16136405	rs4808423	C	T	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	16136528	rs140634016	G	GCAGCACCTGGC	1438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.126;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:76,38:0.33:114
chr19	16136923	rs757546	T	C	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	16137025	rs757547	C	A	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	16137052	rs757548	A	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	16146400	rs17683335	A	G	7632.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	16178587	rs4808031	A	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-1.010;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:45,44:0.49:89
chr19	16186772	rs7260235	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	16186815	rs10633690	C	CCA	525.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	16187353	.	G	GTGCGCCTC	484.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr19	16192898	rs3826722	A	G	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=-0.947;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:35,61:0.64:96
chr19	16192958	rs3786577	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr19	16197421	rs2303149	A	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=1.052;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr19	16228970	rs2233145	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:77,49:0.39:126
chr19	16236557	rs10416989	G	A	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	16254422	rs4321304	T	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr19	16254597	rs35735569	A	G	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:81,52:0.39:133
chr19	16254694	rs2446366	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	16263202	rs285286	G	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	16263227	.	C	CA	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.392;QD=4.82;ReadPosRankSum=1.030;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	16265494	rs111524	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	16268207	rs5827321	TA	T	10094.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr19	16275515	rs6512086	A	G	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:90,90:0.50:180
chr19	16275655	rs6512087	C	T	3716.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:203,179:0.47:382
chr19	16275772	rs4808461	A	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr19	16280634	rs2003419	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr19	16283852	.	TACACAC	T	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.230;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr19	16301312	rs206231	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr19	16301544	rs2242143	G	C	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr19	16314299	rs117647142	C	T	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:90,101:0.53:191
chr19	16320075	rs2290802	C	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr19	16321047	rs7258138	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr19	16337423	rs2305939	T	C	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:95,79:0.45:174
chr19	16338532	rs2124904	G	A	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:55,109:0.66:164
chr19	16339069	rs2305937	G	A	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:100,108:0.52:208
chr19	16339715	rs3752797	C	T	4846.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:219,232:0.51:451
chr19	16344528	rs2279060	C	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr19	16345099	rs897774	T	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr19	16435717	rs8106384	T	C	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	16436262	rs3745318	T	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	16487905	rs11086030	T	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	16504617	.	T	C	286.22	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	16513357	rs34782743	CT	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.807;QD=4.74;ReadPosRankSum=1.921;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr19	16514771	rs873636	A	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	16539347	rs71178694	G	GAAGA	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=7.579;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=0.000;QD=21.24;ReadPosRankSum=-0.534;SOR=3.113;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	16539354	rs374317214	GACAGA	G	550.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=7.899;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=0.000;QD=16.20;ReadPosRankSum=-0.095;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	16539356	rs4808510	C	A	714.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.437;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=7.899;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=0.000;QD=21.02;ReadPosRankSum=-0.175;SOR=3.198;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr19	16539366	rs368177133	AG	A	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=7.074;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=1.620;QD=15.04;ReadPosRankSum=-1.428;SOR=0.059;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	16552914	rs2305781	G	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:91,64:0.41:155
chr19	16593189	rs138347151	CAACAA	C	617.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	16593573	rs10403020	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr19	16596142	.	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.071;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr19	16601168	rs3810197	G	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr19	16601411	rs79268770	A	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:84,107:0.56:191
chr19	16606742	rs3810199	G	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr19	16606766	rs3810200	G	C	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,37:0.41:91
chr19	16611527	rs62118143	T	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	16611978	rs728116	T	C	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:100,86:0.46:186
chr19	16612011	rs728117	T	C	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:110,102:0.48:212
chr19	16612365	rs7251978	G	A	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=5.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-0.485;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	16612368	rs11397471	A	AT	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=7.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=1.347;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	16613797	rs61130725	CA	C	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=2.905;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:60,30:0.33:90
chr19	16617646	rs28716321	T	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.733;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr19	16625242	.	T	TG	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-1.102;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr19	16628186	rs28447467	G	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr19	16628259	rs142142968	GAC	G	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.322;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr19	16631147	rs74909346	G	A	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:87,101:0.54:188
chr19	16631322	rs2303119	T	C	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	16631776	rs8111801	G	C	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	16633950	rs1043481	T	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	16639121	rs12459056	C	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr19	16641561	rs77142035	C	T	4615.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:171,217:0.56:388
chr19	16652908	rs117078420	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr19	16653249	rs45528635	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr19	16665857	rs731617	C	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	16675947	rs11673650	C	T	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.443;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:124,119:0.49:243
chr19	16771969	rs142570025	C	T	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.73;SOR=3.209;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	16797240	rs2249827	A	G	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	16798927	rs2547112	T	C	16113.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr19	16841831	rs8108763	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	16842052	rs8107776	G	T	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	16856015	rs3848654	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-1.643;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	16860105	rs706764	G	A	9878.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr19	16860813	.	C	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=5.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.956;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:291,50:0.15:341
chr19	16872794	rs61995711	C	T	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:195,121:0.38:316
chr19	16872940	rs773852	G	A	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-2.264;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:88,58:0.40:146
chr19	16876099	rs4808526	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	16899838	rs2608737	A	T	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	16905474	rs2431802	G	T	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	16923494	rs773894	C	G	1320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-1.676;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:61,59:0.49:120
chr19	16926067	rs11671361	A	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr19	16957638	rs2241377	A	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr19	16976286	rs773911	A	G	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	16988456	rs2303090	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr19	16988476	rs2258663	T	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.572;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr19	16999897	rs773905	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	17003789	rs773901	T	G	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:86,107:0.55:193
chr19	17004049	rs1054533	T	C	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:49,66:0.57:115
chr19	17006697	rs2227366	C	A	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.52;ReadPosRankSum=-0.412;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr19	17006700	rs2981473	G	T	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.52;ReadPosRankSum=-0.312;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr19	17006738	rs2981474	A	G,ACACGCG	958.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.590;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.590;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=35.51;ReadPosRankSum=0.869;SOR=0.829;set=HC	GT:AD:AF:DP	1/2:1,13,13:0.48,0.48:27
chr19	17006787	rs2227367	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr19	17008578	rs2608732	G	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr19	17011860	rs60122837	G	T	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.538;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.129;QD=8.18;ReadPosRankSum=0.280;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr19	17011950	rs77345177	A	AC	5380.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	17014718	rs79769868	T	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr19	17015428	rs773863	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr19	17025292	rs706761	G	A	8606.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	17032550	rs3745331	A	G	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.122;QD=18.50;ReadPosRankSum=-0.937;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:37,31:0.46:68
chr19	17032559	rs3745332	T	C	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.987;QD=17.98;ReadPosRankSum=-2.651;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:36,39:0.52:75
chr19	17056294	rs8100610	G	C	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=2.063;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr19	17062644	rs8108234	T	C	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=-1.017;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr19	17068621	rs1457090	C	G	1853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.150;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:79,90:0.53:169
chr19	17081707	rs9305083	G	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr19	17107825	rs3745337	G	A	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:113,106:0.48:219
chr19	17108135	rs3745340	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:107,71:0.40:178
chr19	17111297	rs4808551	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	17111411	rs4808064	A	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	17119560	rs897768	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	17122630	rs35560062	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr19	17137290	rs11878608	A	C	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:143,134:0.48:277
chr19	17163661	rs2305758	C	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:106,88:0.45:194
chr19	17166896	rs3214849	TAA	T	886.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	17166981	rs2278997	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	17169758	rs2305757	G	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr19	17170540	rs1551552	GG	AT	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr19	17170885	rs1130222	C	T	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:95,119:0.56:214
chr19	17171035	rs35562523	TAAA	T,TAA	1041.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.334;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.435;QD=20.83;ReadPosRankSum=-0.095;SOR=1.206;set=HC	GT:AD:AF:DP	1/2:5,30,15:0.60,0.30:50
chr19	17173487	rs3816550	A	G	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:85,100:0.54:185
chr19	17179789	rs2305754	G	A	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	17186127	rs2305752	A	C	5877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=1.963;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:275,282:0.51:557
chr19	17186136	rs2305751	C	A	20809.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr19	17212992	rs3745349	C	T	6546.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:303,307:0.50:610
chr19	17270044	rs28531775	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr19	17273893	rs7256689	G	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,59:0.57:104
chr19	17283383	rs11463235	A	AG	1404.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	17283657	rs2279006	C	T	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:109,151:0.58:260
chr19	17286438	rs8113494	A	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr19	17286663	rs28735424	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	17298679	rs7249926	G	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	17298724	rs9305088	G	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr19	17298893	rs3826689	G	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr19	17298946	rs3826690	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr19	17299009	rs3826691	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr19	17301706	rs62126162	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=-1.088;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr19	17301733	rs34092109	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr19	17301863	rs962919	G	A	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:97,112:0.54:209
chr19	17301880	rs4808072	T	C	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	17302056	rs962918	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	17302112	rs10541498	ACT	A	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	17303460	rs4808594	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	17303774	rs1545620	T	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,36:0.40:89
chr19	17305440	rs1064305	T	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr19	17305781	rs45541337	T	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:68,86:0.56:154
chr19	17306031	rs2279003	T	C	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr19	17306074	rs112900956	G	A	3810.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:207,181:0.47:388
chr19	17310998	rs79115756	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr19	17316261	rs10423542	G	A	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,50:0.58:86
chr19	17316697	rs12327728	C	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	17318110	rs78889477	C	T	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:113,127:0.53:240
chr19	17320308	rs76331713	C	T	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	17321792	rs10404291	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=63.82;MQRankSum=2.429;QD=7.52;ReadPosRankSum=-0.807;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	17322800	rs117297085	T	C	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:68,101:0.60:169
chr19	17326567	rs388484	A	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	17330060	rs414528	T	C	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	17336904	rs7254151	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr19	17336962	rs7255142	C	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,72:0.52:138
chr19	17337223	rs2288542	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr19	17337447	rs10426800	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr19	17337733	rs3745164	C	T	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:146,161:0.52:307
chr19	17337871	rs891204	A	G	5084.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:236,235:0.50:471
chr19	17337882	rs891203	C	G	5264.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:245,240:0.49:485
chr19	17338099	rs891201	G	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr19	17339112	rs14129	G	A	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr19	17339193	rs113462551	CT	C	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.458;QD=6.47;ReadPosRankSum=-2.161;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	17343560	rs6512178	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr19	17351535	rs2288539	G	A	6339.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:270,306:0.53:576
chr19	17360878	rs3745168	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	17361116	rs1043963	G	A	2094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=0.804;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:79,104:0.57:183
chr19	17362526	rs10469471	A	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	17362941	rs7247493	A	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	17366110	rs35026554	CA	C	2584.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=4.922;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.483;QD=19.58;ReadPosRankSum=0.416;SOR=0.158;set=HC	GT:AD:AF:DP	1/1:5,127:0.96:132
chr19	17366278	rs4430871	T	C	11374.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr19	17366313	rs12459398	C	T	8919.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	17367435	rs9676419	T	C	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	17367585	rs4464206	G	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	17370190	rs11880383	T	G	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:131,130:0.50:261
chr19	17374726	rs8112782	G	C	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:58,94:0.62:152
chr19	17382246	rs111324512	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	17382505	rs10420922	A	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr19	17392483	rs7246262	C	G	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=1.921;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr19	17393015	rs1864116	C	T	391.94	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr19	17393504	rs1864113	G	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	17393925	rs56069439	C	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr19	17394504	rs891017	A	C	9898.77	.	AC=1;AF=0.500;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	0/1:463,481:0.51:944
chr19	17395003	rs11086065	A	G	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:108,98:0.48:206
chr19	17395055	rs11882562	C	G	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr19	17395182	rs4808614	G	T	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr19	17395192	rs60208686	CT	C	173.74	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr19	17396549	rs751599	T	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr19	17396761	rs891018	T	C	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	17397481	rs1465581	G	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.899;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:57,10:0.15:67
chr19	17397483	rs367668712	G	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=2.005;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr19	17397491	.	G	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.710;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:57,9:0.14:66
chr19	17397493	rs371454519	G	T	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=2.290;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr19	17397497	.	GTGTT	G	466.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=2.147;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr19	17397499	.	GTT	G	201.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=1.364;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr19	17397700	rs10401700	A	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr19	17403414	rs113634768	C	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr19	17412044	.	C	T	2635.77	.	AC=1;AF=0.500;AN=2;DP=233;set=Intersection	GT:AD:AF:DP	0/1:115,118:0.51:233
chr19	17416590	rs3217329	CT	C	2259.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:63,108:0.63:171
chr19	17417080	rs11548548	C	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.882;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:75,49:0.40:124
chr19	17424932	rs2288463	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:48,69:0.59:117
chr19	17424947	rs12327712	T	G	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr19	17434587	rs12977101	T	G	252.53	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	17435851	rs755124	G	T	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:111,90:0.45:201
chr19	17435884	rs755123	T	C	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:121,113:0.48:234
chr19	17438642	rs8102944	A	G	4540.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:151,203:0.57:354
chr19	17438923	rs113207944	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr19	17438930	.	G	GGCGAGGCCCCGCCCCCT	527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.489;QD=12.27;ReadPosRankSum=2.606;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr19	17439320	rs76655932	C	T	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=2.132;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:43,35:0.45:78
chr19	17441093	rs75616124	G	T	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:111,115:0.51:226
chr19	17441909	rs61734355	T	G	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:170,160:0.48:330
chr19	17443891	rs79771034	G	A	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:92,115:0.56:207
chr19	17446041	rs113983944	C	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr19	17448961	rs1864112	A	C	9987.77	.	AC=1;AF=0.500;AN=2;DB;DP=980;set=Intersection	GT:AD:AF:DP	0/1:495,484:0.49:979
chr19	17449157	rs75326392	C	G	5582.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:271,262:0.49:533
chr19	17449602	rs75211789	C	T	7324.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:254,327:0.56:581
chr19	17449699	rs45541332	A	G	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:125,145:0.54:270
chr19	17450016	rs3810206	T	C	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:97,141:0.59:238
chr19	17451736	rs75893526	C	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr19	17452527	rs919333	G	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	17463214	rs62128111	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:96,60:0.38:156
chr19	17471723	.	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=-0.000;DP=46;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=-0.236;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	17476312	rs376519104	G	A	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:184,146:0.44:330
chr19	17488141	rs10417806	A	C	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr19	17502698	rs2278235	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,38:0.45:85
chr19	17514440	rs919265	G	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.24;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	17514646	rs113321277	T	TGGG	12452.73	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	17516400	rs111617488	A	AGCTGAAAG	7327.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	17531450	rs2303680	G	A	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	17531990	rs10679842	C	CT	579	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.694;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:17,46:0.73:63
chr19	17533126	rs2303678	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr19	17534693	rs2288408	T	C	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	17534898	rs13345062	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:63,76:0.55:139
chr19	17535546	rs4808636	C	T	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	17535658	rs4808637	A	C,G	7657.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=332;set=Intersection	GT:AF:DP	1/2:0.39,0.61:331
chr19	17535867	rs201974585	CCTCACTGCATCCTGGGGCCACCCCCA	C	1279.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr19	17544165	rs10415889	C	T	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	17544244	rs34189069	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr19	17547292	rs4808641	A	G	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	17556054	rs3810209	A	G	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	17559076	rs4808643	T	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	17571200	rs12984622	A	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	17571766	rs890839	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	17597830	rs12979251	G	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	17608516	rs11672333	T	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	17611261	rs3746318	G	A	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:137,154:0.53:291
chr19	17611490	rs11879407	T	G	9902.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	17612251	rs11668681	T	C	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	17622512	rs368232818	G	A	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-0.792;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:21,31:0.60:52
chr19	17622614	rs11086075	C	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.83;ReadPosRankSum=0.805;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:17,32:0.65:49
chr19	17628587	rs6743	A	G	4545.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:192,219:0.53:411
chr19	17628737	rs8104468	T	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr19	17631821	rs148164602	G	A	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-1.962;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:84,83:0.50:167
chr19	17638121	rs138735905	G	A	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-0.656;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:56,59:0.51:115
chr19	17643065	rs12984143	T	C	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	17648350	rs8107859	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	17651370	rs11878663	A	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	17660300	rs11666267	G	A	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:76,96:0.56:172
chr19	17664418	rs34631213	G	A	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:52,60:0.54:112
chr19	17666636	rs7259723	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	17670039	.	T	C	1252.77	.	AC=1;AF=0.500;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr19	17679597	rs3848645	A	G	3966.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr19	17692324	rs8100092	T	G	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	17716896	rs3746198	G	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:81,81:0.50:162
chr19	17721045	rs140453033	C	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr19	17728502	rs2287851	T	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	17728726	rs8113826	C	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr19	17729148	rs2287849	C	T	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,54:0.56:96
chr19	17729672	rs56145097	T	TG	3978.73	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:107,156:0.59:263
chr19	17729787	rs56257446	T	G	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr19	17731716	rs10421645	G	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr19	17734488	rs10419420	A	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	17735631	rs148883310	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr19	17737435	rs12610816	A	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr19	17737650	rs12609205	G	A	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,70:0.56:126
chr19	17738466	rs3810441	T	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:47,66:0.58:113
chr19	17738850	rs56388321	C	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	17739976	rs11667290	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	17741047	rs10413821	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	17744075	rs71162163	G	GC	1087.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,45:0.41:109
chr19	17746947	rs4239634	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	17758368	rs4808675	A	G	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr19	17759289	rs73922174	G	C	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr19	17760561	rs11665951	C	T	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	17763392	rs1159365	A	G	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	17766900	rs34752754	C	T	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:82,119:0.59:201
chr19	17768818	rs1157615	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr19	17769166	rs7258943	C	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	17777431	rs10424761	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	17777508	rs9305092	C	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	17778832	rs7248783	A	G	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	17783019	rs4808677	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr19	17786748	rs61036582	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	17830507	.	GGGCGGCGGC	G	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.86;ReadPosRankSum=-0.093;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	17830535	.	CG	C	332	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=3;HapScore=2;MGOF=76;MMLQ=24;MQ=60.0;NF=0;NR=6;PP=332;QD=59.8333333333;SC=CGGCGGGACCCGGGCTCCGGG;SbPval=1.0;Source=Platypus;TC=12;TCF=2;TCR=10;TR=6;WE=17830543;WS=17830525;set=Platypus	GT:AD:AF:DP	1/0:6,6:0.50:12
chr19	17834916	.	C	T	667.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:76,37:0.33:113
chr19	17835811	rs200192302	A	ACGT	9166.73	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:250,237:0.49:487
chr19	17835831	rs3761055	T	G	4866.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:247,239:0.49:486
chr19	17836943	rs115609579	C	T	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:140,123:0.47:263
chr19	17837417	rs138676223	G	A	2122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-0.004;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:66,101:0.60:167
chr19	17837981	rs7253548	A	G	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:230,198:0.46:428
chr19	17844325	rs2287860	T	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr19	17881171	rs12327667	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	17881552	rs3746197	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	17885270	rs2287859	A	G	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	17885308	rs2287858	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	17885325	rs2287857	A	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	17885336	rs2287856	C	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	17886940	rs2287854	G	A	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	17887024	rs2287853	T	C	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	17888787	rs4808690	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=-0.473;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	17892193	rs2287852	G	C	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	17892478	rs2042299	A	G	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	17892591	rs2042298	A	G	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	17892796	rs67498129	CTTTTTTTTTTTTTTTT	C	286.74	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=40.96;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	17922795	rs36686	G	A	12119.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	17932138	rs6523	T	C	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr19	17932190	rs1047233	T	C	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,47:0.46:103
chr19	17940705	rs60485073	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr19	17941294	rs2302603	T	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr19	17942005	rs3212774	A	G	1697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.357;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:74,75:0.50:149
chr19	17946054	rs2072496	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr19	17952609	rs3212730	T	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.012;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr19	17955001	rs3212713	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.34;ReadPosRankSum=-1.272;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr19	17955001	.	CCC	TCT	269	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5001;HP=3;HapScore=2;MGOF=19;MMLQ=24;MQ=60.0;NF=7;NR=2;PP=269;QD=35.8297638736;SC=CCCACACAGCCCCATCCTTCC;SbPval=0.74;Source=Platypus;TC=11;TCF=8;TCR=3;TR=9;WE=17955011;WS=17954991;set=Platypus	GT:AD:AF:DP	0/1:2,9:0.82:11
chr19	17955003	rs3212712	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.34;ReadPosRankSum=-1.272;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr19	17955021	rs3212711	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr19	17973862	rs73020697	G	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr19	17994393	rs73520742	T	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr19	17994635	rs55910163	C	T	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr19	17999239	rs45602038	C	T	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:83,101:0.55:184
chr19	18001686	rs4808708	G	A	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.262;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr19	18001839	rs4808709	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:77,52:0.40:129
chr19	18004393	rs35036312	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	18047283	rs4808722	T	G	2351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.035;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:74,107:0.59:181
chr19	18053340	rs4808105	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.232;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.295;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	18092442	rs11666833	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr19	18108956	rs4808732	C	G	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:115,104:0.47:219
chr19	18110890	rs4808110	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr19	18110994	rs4808733	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	18119399	rs28597966	G	A	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:117,137:0.54:254
chr19	18119678	rs2305738	C	A	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:111,127:0.53:238
chr19	18123617	rs7255640	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr19	18123738	rs7259041	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr19	18143862	rs11883085	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	18143954	rs35627700	C	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr19	18172043	rs67773732	G	GT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.364;QD=2.69;ReadPosRankSum=-0.550;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr19	18182266	rs2045386	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	18194264	rs146978336	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:87,59:0.40:146
chr19	18232778	rs273483	A	G	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	18233279	rs273486	C	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	18233283	rs55849352	C	CG	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	18234441	rs740691	C	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:83,65:0.44:148
chr19	18235352	rs123202	T	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,39:0.45:87
chr19	18235424	rs123203	T	C	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:107,125:0.54:232
chr19	18242675	rs273497	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.416;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.368;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr19	18245512	rs2270623	C	T	2302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=4.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.777;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:112,110:0.50:222
chr19	18245807	rs12983325	C	T	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.89;ReadPosRankSum=1.300;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:41,60:0.59:101
chr19	18245813	rs273499	T	C	2301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.75;ReadPosRankSum=0.567;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:35,58:0.62:93
chr19	18248146	rs541225	T	C	5180.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:165,245:0.60:410
chr19	18252829	rs613339	A	G	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=0.712;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:31,45:0.59:76
chr19	18255359	rs8108738	G	A	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:63,83:0.57:146
chr19	18256418	rs11305984	TC	T	765.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr19	18257750	rs2072490	C	T	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:83,99:0.54:182
chr19	18257875	rs273279	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	18258459	rs1566030	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr19	18272190	rs2241088	A	C	110.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.76;ReadPosRankSum=0.366;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	18273013	rs28730848	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr19	18273047	rs1011320	T	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr19	18273410	rs2006885	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr19	18276856	rs4808755	T	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	18279638	rs273269	T	C	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:165,165:0.50:330
chr19	18284651	rs2241089	G	T	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:108,73:0.40:181
chr19	18285751	rs2241090	G	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr19	18286546	rs200373	T	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr19	18288069	rs7125	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:159,93:0.37:252
chr19	18305578	rs16982263	G	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr19	18305824	rs2271881	C	T	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:293,230:0.44:523
chr19	18306867	rs141015940	C	G	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:235,157:0.40:392
chr19	18307224	rs11552160	A	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:159,126:0.44:285
chr19	18309365	rs2271882	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr19	18344273	rs35421958	AC	A	1747.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr19	18358783	rs4808122	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	18359037	rs57884093	G	A	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.76;SOR=1.305;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	18391171	rs7249	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	18392873	rs7247222	C	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	18393032	rs41374745	C	CTCCT	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=0.515;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	18420704	rs2227270	C	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:43,51:0.54:94
chr19	18423402	rs2232968	T	C	9064.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr19	18426950	rs2232965	T	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	18453813	rs35175980	CT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.762;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	18466840	rs34068189	C	T	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	18497024	rs1059519	G	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr19	18499422	rs1058587	C	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:157,86:0.35:243
chr19	18499780	rs1227733	A	G	2017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.59;ReadPosRankSum=1.041;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:51,52:0.50:103
chr19	18499784	rs1055150	C	G	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.69;ReadPosRankSum=-0.236;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:46,53:0.54:99
chr19	18502728	rs6512264	C	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	18502835	rs6512265	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr19	18503093	rs6512266	T	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr19	18541579	rs11395316	G	GA	4710.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	18544498	rs2544723	A	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=45.52;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	18544501	rs62122438	C	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=44.17;SOR=2.899;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	18544505	rs2544724	G	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.51;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	18544677	rs78783575	G	GC	2008.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	18544804	.	C	T	97.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr19	18547724	.	T	C	4222.77	.	AC=1;AF=0.500;AN=2;DP=426;set=Intersection	GT:AD:AF:DP	0/1:211,213:0.50:424
chr19	18562345	rs62122441	A	C	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.417;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr19	18572355	rs117956919	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr19	18583696	.	TA	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.838;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr19	18650278	rs7247733	T	C	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr19	18652844	rs10854166	A	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr19	18675612	rs62137086	T	G	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:87,107:0.55:194
chr19	18675854	rs10692700	G	GGGC	4021.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:77,103:0.57:180
chr19	18679155	rs1468475	C	T	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:88,124:0.58:212
chr19	18679379	rs7648	C	G	4350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.593;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:202,198:0.49:400
chr19	18684563	rs2302055	C	T	2105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.493;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:123,109:0.47:232
chr19	18685964	rs6554	G	T	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr19	18699489	rs10415257	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=-0.126;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	18699990	rs2074174	T	C	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:107,96:0.47:203
chr19	18700047	rs2074175	A	G	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:193,181:0.48:374
chr19	18701499	rs7258589	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr19	18703077	rs3170474	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	18704528	rs7256319	C	T	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	18707878	rs7247346	A	C	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	18709175	rs35521276	C	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	18709768	rs8108207	G	A	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	18726856	rs709679	T	C	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,85:0.50:169
chr19	18728254	rs34863656	G	A	6201.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:298,292:0.49:590
chr19	18775077	rs1076235	C	T	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	18778445	rs10421503	C	G	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	18857939	rs373778758	AC	A	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-1.083;SOR=0.019;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr19	18895218	rs12327738	G	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr19	18897526	rs5827423	A	AG	2598.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	18942888	rs4808161	C	G	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	18974200	rs2238658	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	18979324	rs11673194	A	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	18980213	rs4808864	A	G	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	18993503	rs62138063	C	T	64.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	19006648	rs113536478	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.60;ReadPosRankSum=2.369;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	19006666	rs3746263	G	C	204.81	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	19011244	rs1127821	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr19	19014248	rs55988241	C	T	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-1.542;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:40,73:0.65:113
chr19	19015491	rs78590319	C	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr19	19016785	rs73003085	G	A	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:78,97:0.55:175
chr19	19018962	rs74254003	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,50:0.51:99
chr19	19019800	rs73003090	G	A	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:71,107:0.60:178
chr19	19020328	rs59105113	CT	C	101.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=1.456;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	19021970	rs1468461	T	C	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	19022045	rs8111633	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr19	19023853	rs3177137	T	C	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:161,96:0.37:257
chr19	19030689	rs2231993	C	G	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:125,134:0.52:259
chr19	19032637	rs2231997	T	C	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr19	19033089	rs2158004	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr19	19033387	rs2106660	G	A	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:149,165:0.53:314
chr19	19035159	rs5827425	CT	C	3467.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	19035370	rs1476505	G	C	7956.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	19037053	rs2301661	T	C	4888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=1.730;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:200,232:0.54:432
chr19	19037294	rs2301662	G	A	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	19039908	rs62138076	G	A	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,66:0.66:100
chr19	19040312	rs1059240	G	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	19043929	.	A	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=8.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-1.489;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	19049194	rs11540741	G	A	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:100,82:0.45:182
chr19	19049198	rs1064351	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:82,107:0.57:189
chr19	19105773	rs3180770	G	A	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=1.416;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:84,77:0.48:161
chr19	19135319	rs6511010	A	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr19	19136541	rs4808907	C	T	4865.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:193,230:0.54:423
chr19	19145193	rs2269806	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr19	19150183	rs12979565	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr19	19151692	rs8104799	T	C	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:95,107:0.53:202
chr19	19153801	rs3214143	G	GC	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr19	19168183	rs7258637	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	19212823	.	G	GT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-1.829;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr19	19215612	rs56247515	T	TA	691.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr19	19230816	rs45467802	T	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr19	19230868	rs756791	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	19243843	rs10414676	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr19	19256870	rs2238663	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr19	19258656	rs3729767	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:91,62:0.41:153
chr19	19267802	rs7256766	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.75;ReadPosRankSum=2.148;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	19267910	rs12162274	G	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-1.623;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr19	19267990	rs7257072	C	T	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	19268114	rs12162246	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	19348947	rs12981871	T	C	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	19348998	rs45520038	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr19	19379549	rs58542926	C	T	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr19	19380646	rs2074299	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr19	19380996	rs2074300	G	T	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:139,124:0.47:263
chr19	19381715	rs2074301	G	A	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr19	19381755	rs2074303	C	T	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:98,82:0.46:180
chr19	19387743	rs2074550	A	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:74,46:0.38:120
chr19	19388057	rs2074551	G	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=1.111;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr19	19388060	rs4808191	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr19	19388500	rs8107974	A	T	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:68,46:0.40:114
chr19	19413381	rs2315022	A	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	19431420	rs5827441	GT	G	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,37:0.38:98
chr19	19431423	rs3934667	T	G	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.923;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-1.010;QD=10.48;ReadPosRankSum=-1.254;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:51,54:0.51:105
chr19	19431963	rs12460764	G	T	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:116,111:0.49:227
chr19	19446936	rs769267	G	A	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.577;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:36,71:0.66:107
chr19	19447933	rs34414052	G	GT,GTT	3382.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.408;QD=18.19;ReadPosRankSum=-0.667;SOR=0.621;set=HC	GT:AD:AF:DP	1/2:13,136,37:0.73,0.20:186
chr19	19449603	rs2074089	G	A	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr19	19449686	rs2074090	G	T	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:85,84:0.50:169
chr19	19451591	rs2965190	A	G	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	19452249	rs2301668	G	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=1.112;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:43,28:0.39:71
chr19	19453521	rs2965191	T	G	2079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=17.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-1.884;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:124,114:0.48:238
chr19	19453560	rs2301669	C	A	1844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=11.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.392;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:119,94:0.44:213
chr19	19453742	rs2965192	A	G	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	19454828	rs2965193	G	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr19	19459554	rs10421505	C	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-0.135;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:80,50:0.38:130
chr19	19459800	rs12982276	T	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:85,65:0.43:150
chr19	19466269	rs2301671	C	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:88,60:0.41:148
chr19	19545990	rs2916076	T	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr19	19547086	rs2916077	T	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	19606443	rs3067692	T	TAA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=-0.564;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	19606634	rs1047361	G	A	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:78,64:0.45:142
chr19	19613381	rs892022	G	A	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:76,44:0.37:120
chr19	19616026	rs3752151	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	19625547	rs7250893	A	G	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:118,129:0.52:247
chr19	19637930	rs7251447	A	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	19646272	rs2304098	T	C	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:204,163:0.44:367
chr19	19648346	rs1054930	G	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	19675696	rs73004933	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	19681089	rs113788698	G	A	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.756;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:52,53:0.50:105
chr19	19735257	rs1266503	G	T	7894.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr19	19737686	rs33982830	C	T	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:47,88:0.65:135
chr19	19740729	rs880090	C	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	19746151	rs2304128	G	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	19750824	rs11298700	AG	A	291.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	19751456	rs2043293	C	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	19758190	rs892035	T	C	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.306;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:66,56:0.46:122
chr19	19789528	rs2304130	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr19	19790876	rs34704748	CAT	C	2172.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr19	19822049	rs7246866	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	19824850	rs11085270	T	G	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,46:0.34:135
chr19	19868879	rs247782	A	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr19	19910183	rs34277739	A	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,55:0.54:102
chr19	19910250	rs72620574	T	C	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=0.105;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:72,59:0.45:131
chr19	19916736	rs12973032	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr19	19976701	rs2304169	A	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr19	19991101	rs34794238	T	TG	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.079;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.495;SOR=0.068;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	20003109	rs8106559	A	G	4193.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:219,193:0.47:412
chr19	20003576	rs12460570	C	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:91,73:0.45:164
chr19	20012070	rs28590063	T	C	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=7.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=0.514;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:70,62:0.47:132
chr19	20044041	rs12151060	G	T	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:155,104:0.40:259
chr19	20150075	rs2286920	A	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr19	20150125	rs2286921	T	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr19	20150175	rs2286922	G	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:134,101:0.43:235
chr19	20150247	rs2286923	A	C	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:91,65:0.42:156
chr19	20150380	rs2335896	T	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	20228941	rs61998186	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr19	20229486	rs1725935	G	A	5374.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:232,236:0.50:468
chr19	20230264	rs1654275	T	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr19	20232177	rs11321273	TA	T	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	20242092	rs1654287	C	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr19	20242274	rs1618723	G	A	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=2.558;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:44,41:0.48:85
chr19	20295146	rs1097510	G	A	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:173,115:0.40:288
chr19	20296738	rs836897	C	G	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr19	20297019	rs149807694	T	TTTTA	946.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	20308207	rs148497901	A	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:240,156:0.39:396
chr19	20369304	rs111453104	C	A	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:132,134:0.50:266
chr19	20369503	rs8103002	C	G	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:123,116:0.49:239
chr19	20414254	rs10425483	A	G	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:84,118:0.58:202
chr19	20415575	rs73000781	C	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr19	20727463	rs10411329	T	C	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:232,142:0.38:374
chr19	20727932	rs33926	G	A	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:269,201:0.43:470
chr19	20735138	.	G	GA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-0.322;SOR=0.133;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr19	20735196	rs7250860	A	T	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:95,86:0.48:181
chr19	20735272	rs7251976	T	C	8379.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr19	20736677	rs2562632	A	G	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:191,157:0.45:348
chr19	20748522	rs12979592	C	A	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:184,181:0.50:365
chr19	20806770	rs34554673	T	TCA	3219.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	20806824	rs10409289	T	C	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	20808149	rs1991528	A	G	6904.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr19	20808515	rs1968385	T	A	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	20828106	rs34588720	C	CAA	310.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	20828410	rs34679916	A	AAAG	3822.73	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:165,104:0.39:269
chr19	20973560	rs377604472	GAAA	G	4943.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	20976742	rs1808542	A	G	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	20988637	rs6511163	G	A	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	21203552	rs2081054	C	T	11659.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr19	21205531	rs7252588	C	T	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	21216536	rs3760839	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	21217211	rs1470020	A	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	21239293	.	TA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.034;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	21281765	rs34494287	T	TA	1077.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.184;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.606;QD=8.90;ReadPosRankSum=1.778;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:50,71:0.59:121
chr19	21299774	rs36125838	T	TATA	9082.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	21300462	rs2884554	A	G	9831.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr19	21349311	rs7256576	C	T	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	21350520	rs113788883	TA	T	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=5.839;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.172;QD=0.59;ReadPosRankSum=-1.721;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:341,78:0.19:419
chr19	21477403	rs1781872	T	G	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:151,94:0.38:245
chr19	21477431	rs1781873	T	C	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:83,128:0.61:211
chr19	21492062	rs547516	G	A	15671.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr19	21493255	rs11665988	A	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.574;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.758;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr19	21493258	rs669560	T	A	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.794;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=0.275;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:22,33:0.60:55
chr19	21493278	rs34067558	TA	T	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.241;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr19	21541806	rs2012013	T	C	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr19	21544503	rs12981775	C	T	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-0.582;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:33,46:0.58:79
chr19	21544514	rs12981564	A	G	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-0.395;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:39,56:0.59:95
chr19	21544571	rs1142653	G	A	2017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=1.121;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:69,97:0.58:166
chr19	21544714	rs12982282	C	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr19	21558169	rs2358993	G	A	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:168,113:0.40:281
chr19	21558311	rs2914645	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	21558818	rs376940300	CA	C	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.205;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr19	21560141	rs1875256	G	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	21560314	rs112058265	G	GCA	697.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:82,32:0.28:114
chr19	21561408	rs11352402	CT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-1.992;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	21587918	rs7254059	G	T	5023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.433;QD=12.85;ReadPosRankSum=0.205;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:158,233:0.60:391
chr19	21588165	rs2650847	G	A	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	21588692	rs1055753	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-0.979;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr19	21605645	rs11666213	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.000;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr19	21606429	rs4621113	G	T	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:84,94:0.53:178
chr19	21606719	rs10414834	C	G	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:224,200:0.47:424
chr19	21688495	rs73017722	C	T	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:77,78:0.50:155
chr19	21688602	rs10420016	C	G	5164.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:170,248:0.59:418
chr19	21719213	rs62108336	G	A	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:111,74:0.40:185
chr19	21719401	rs35782355	T	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr19	21736788	rs2562502	T	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	21736838	rs2681370	T	C	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	21838002	rs7351091	G	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=28.29;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	21838113	rs34320073	A	AGAT	3178.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	21838146	rs7351088	C	T	2581.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=44.51;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	21838146	.	CA	TG	2180	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MGOF=45;MMLQ=28;MQ=60.17;NF=22;NR=27;PP=2180;QD=45.580977038;SC=TGATAACTACCAAGAGCAATA;SbPval=0.52;Source=Platypus;TC=50;TCF=22;TCR=28;TR=49;WE=21838155;WS=21838136;set=Platypus	GT:AD:AF:DP	1/1:1,49:0.98:50
chr19	21838147	rs7351087	A	G	2581.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=44.51;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	21838240	rs6511279	C	A	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	21838351	rs7508059	A	G	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	21838492	rs6511280	C	G	6340.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	21838565	rs6511281	T	C	12190.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr19	21838657	rs7508494	G	A	12170.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	21838785	rs10422946	C	T	9149.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr19	21838830	rs10422804	A	C	9713.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr19	21909948	rs7246400	G	A	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:163,177:0.52:340
chr19	21948748	rs11085493	T	C	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	21950337	rs10412066	G	C	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:195,140:0.42:335
chr19	21950402	rs6511291	T	C	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:75,103:0.58:178
chr19	22000908	.	A	AT	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.274;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr19	22115982	rs807958	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=49.48;MQRankSum=-1.133;QD=12.25;ReadPosRankSum=-0.000;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	22115990	rs807957	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=50.92;MQRankSum=-1.403;QD=10.35;ReadPosRankSum=0.854;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	22153495	rs2359812	A	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:71,66:0.48:137
chr19	22154954	rs2214301	C	T	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:131,109:0.45:240
chr19	22157302	rs10419899	G	A	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:211,141:0.40:352
chr19	22171880	rs4574045	C	T	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=0.312;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr19	22193451	rs2040654	C	G	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	22235307	rs415291	C	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:76,58:0.43:134
chr19	22235491	rs387343	T	G	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:198,177:0.47:375
chr19	22235526	rs387315	T	C	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:148,132:0.47:280
chr19	22235577	rs408312	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr19	22235620	rs423926	G	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr19	22256396	rs3752163	G	A	5974.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:253,274:0.52:527
chr19	22363826	rs7252593	G	C	3053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-4.824;QD=5.42;ReadPosRankSum=-5.997;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:433,130:0.23:563
chr19	22363844	rs7252604	G	A	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.274;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-8.272;QD=3.25;ReadPosRankSum=-7.379;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:455,71:0.13:526
chr19	22363861	rs7253392	T	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.408;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-12.891;QD=0.37;ReadPosRankSum=-7.891;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:450,35:0.07:485
chr19	22469233	rs808373	G	C	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=1.753;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	22585517	rs35315232	A	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	22585521	rs35112061	CT	C	1057.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=7.543;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-5.508;QD=11.37;ReadPosRankSum=1.697;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:18,75:0.81:93
chr19	22586073	rs56768795	C	A	2528.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=43.60;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	22586074	.	A	AC	339.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.134;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr19	22586075	.	A	AC	51.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.162;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr19	22586084	rs113181884	A	C	3012.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;QD=37.19;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	22586192	rs1368476	A	G	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	22605103	rs11669353	G	C	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	22605120	rs11669356	G	T	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	22782955	rs3214614	CT	C	611.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	22784349	rs62121319	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr19	22784679	rs115581662	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr19	22784843	rs11670104	T	G	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	22785134	rs11670207	T	C	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	22785453	rs60588450	G	A	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:90,115:0.56:205
chr19	22786020	rs2304141	G	T	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr19	22786041	rs62121323	A	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,55:0.49:113
chr19	22786126	rs2304143	T	A	7918.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr19	22786284	rs141668737	G	GC	2536.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:80,105:0.57:185
chr19	23328940	rs7247102	G	A	8916.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr19	23406165	rs2885604	T	C	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	23406801	rs8110795	G	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	23413937	rs7256859	A	G	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	23414167	rs4932841	T	G	9948.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr19	23433107	rs10405424	G	C	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	23542290	rs428549	AG	GC	2113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=6.135;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-3.254;QD=17.05;ReadPosRankSum=0.023;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:69,55:0.44:124
chr19	23542697	rs1821845	G	C	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:215,166:0.44:381
chr19	23543834	rs7255296	C	T	4724.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:198,224:0.53:422
chr19	23545004	rs296092	G	A	4797.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:180,216:0.55:396
chr19	23545250	rs1044095	A	G	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:79,44:0.36:123
chr19	23557966	rs12976946	T	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.49;ReadPosRankSum=1.356;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	23837195	rs77385655	T	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.295;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr19	23837365	rs4380159	A	C	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	23845038	rs10418600	T	G	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=1.944;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	23845042	rs10418602	T	C	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.896;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	23869684	rs4020520	G	A	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	23869823	rs2364624	T	G	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:217,165:0.43:382
chr19	23869941	rs2364625	A	G	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	23926332	rs10405811	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	23926916	rs1852432	T	C	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:205,155:0.43:360
chr19	23927252	rs1818990	C	T	12606.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr19	23927345	rs7245561	T	C	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:245,168:0.41:413
chr19	23927468	rs1818989	A	G	5123.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,177:0.99:178
chr19	23928102	rs7248674	C	G	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	23941459	rs6417220	G	A	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	24115138	rs11667315	T	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr19	24309080	rs17854260	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:91,43:0.32:134
chr19	29704002	rs11666764	T	C	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=44.07;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	29704010	rs8100724	A	C	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=43.74;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	30097268	rs2303754	C	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr19	30099457	rs1465585	A	G	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr19	30102856	rs2288477	A	G	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:106,94:0.47:200
chr19	30103153	rs4804893	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr19	30106130	rs72228837	CT	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=8.873;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.662;QD=5.44;ReadPosRankSum=0.044;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr19	30193721	rs10424582	G	A	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:99,109:0.52:208
chr19	30303714	rs3218029	T	TC	1498.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr19	30313576	rs3218069	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	30314666	rs7257694	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr19	30433668	rs1990903	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	30500118	rs3840928	GTGA	G	8762.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=1.534;MLEAC=2;MLEAF=1.000;MQ=60.86;MQRankSum=0.281;QD=22.07;ReadPosRankSum=0.739;SOR=0.479;set=HC	GT:AD:AF:DP	1/1:30,367:0.92:397
chr19	30935048	.	C	T	2882.77	.	AC=1;AF=0.500;AN=2;DP=266;set=Intersection	GT:AD:AF:DP	0/1:132,134:0.50:266
chr19	31038995	rs1469705	T	C	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:80,101:0.56:181
chr19	31840190	rs71173962	AG	A	924.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	31930388	rs8103449	A	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr19	31930590	.	AGAG	A	584.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr19	31930594	.	A	AT	584.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr19	32083696	rs7245697	T	C	7783.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr19	32873698	rs2270399	A	G	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	32899293	rs2012353	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=1.416;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr19	32902404	rs10410770	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr19	32927311	rs2302773	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	32930069	rs6510249	G	A	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:77,123:0.61:200
chr19	32946043	rs2903738	A	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	32948885	rs11385163	A	AT	868.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr19	32954725	rs1544511	G	A	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.191;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr19	32955406	rs7252536	A	T	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	32971223	rs16967141	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr19	32973077	rs7253039	C	T	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=0.511;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:82,58:0.41:140
chr19	33072069	rs10402931	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	33072085	rs10405535	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	33072118	rs11084660	C	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	33072266	rs10411464	T	C	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	33073086	rs35500233	GT	G	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.088;QD=9.56;ReadPosRankSum=-2.582;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr19	33076973	rs10500262	T	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	33098632	rs2302970	G	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	33098870	rs2903755	C	T	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=2.262;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	33098875	rs2868150	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.52;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	33106390	rs614370	T	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	33106621	rs405858	C	T	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	33110149	rs28615461	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	33110204	rs2287669	T	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	33117666	rs6510271	T	C	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	33117842	rs6510272	C	A	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	33117884	rs6510273	T	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	33119883	rs6510274	A	G	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	33130496	rs11084666	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	33131112	rs3760943	G	A	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	33131336	rs10416829	T	C	10280.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr19	33133936	rs3841621	CG	C	1540.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	33134425	rs259229	G	A	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	33134635	rs259228	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	33135458	rs259225	C	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	33137629	rs259220	T	A	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	33149768	rs259251	G	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	33150045	rs11486502	C	T	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=24.56;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	33167455	rs259290	G	T	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	33167879	rs259291	G	A	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	33308875	rs373375139	CA	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.003;QD=0.84;ReadPosRankSum=-0.687;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:106,29:0.21:135
chr19	33321717	rs3214460	A	G	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	33353574	rs72009425	A	AT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.142;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr19	33390796	rs10418340	G	A	8154.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	33391006	rs10426667	T	G	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	33406442	rs7246178	A	G	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	33406484	rs7260149	G	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	33406549	rs7246326	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	33418037	rs141452719	CCCAT	C	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	33422488	.	A	AC	553.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr19	33428423	rs2304100	G	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	33430816	rs12461782	T	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	33439158	rs12710001	T	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	33444453	rs75223967	T	G	5318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=5.406;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.890;QD=18.21;ReadPosRankSum=0.708;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:128,164:0.56:292
chr19	33444456	rs2944021	A	G	1626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.541;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.698;QD=5.35;ReadPosRankSum=0.448;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:203,101:0.33:304
chr19	33444479	rs79480383	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=3.209;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.420;QD=0.85;ReadPosRankSum=0.767;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:323,59:0.15:382
chr19	33444511	rs80283382	T	C	5517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=4.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.516;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:195,249:0.56:444
chr19	33444556	.	T	C	1590	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MGOF=53;MMLQ=24;MQ=59.85;NF=38;NR=64;PP=1590;QD=15.9291295348;SC=AGGTCATCACTGTGGCCTCCT;SbPval=0.88;Source=Platypus;TC=273;TCF=129;TCR=144;TR=102;WE=33444564;WS=33444546;set=Platypus	GT:AD:AF:DP	1/0:171,102:0.37:273
chr19	33444576	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=3;HapScore=2;MGOF=47;MMLQ=28;MQ=59.82;NF=19;NR=48;PP=2962;QD=20;SC=TCTGTCCTCCCGGGCACTGAC;SbPval=0.97;Source=Platypus;TC=213;TCF=95;TCR=118;TR=67;WE=33444596;WS=33444566;set=Platypus	GT:AD:AF:DP	0/1:146,67:0.31:213
chr19	33444707	rs10411735	C	T	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	33444773	rs34154748	CTT	C	218.74	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	33462564	.	T	TA	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=9.746;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.770;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:154,45:0.23:199
chr19	33467357	rs2304102	G	A	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	33467576	rs7258185	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	33467620	rs7247715	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	33470874	rs8099835	A	G	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	33481388	rs7250684	C	T	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	33486810	rs4805026	A	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	33486822	rs8110267	T	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	33487071	rs12610600	G	C	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:152,115:0.43:267
chr19	33487182	rs11084689	A	G	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	33487251	rs8110730	T	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	33490429	.	G	T	66.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	33490442	.	C	T	96.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr19	33490462	.	G	A	160.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	33490480	rs74603434	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr19	33490566	rs201801079	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-3.902;QD=2.21;ReadPosRankSum=1.363;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr19	33490685	rs8109247	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	33493334	rs12610963	G	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr19	33498978	rs2163807	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr19	33503799	rs12460205	T	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	33638529	rs73039475	G	A	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,80:0.51:158
chr19	33685836	rs60145560	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	33687750	rs3760890	C	T	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr19	33695830	rs11666900	G	A	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	33696708	rs2112800	T	C	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	33696897	rs11084712	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:144,106:0.42:250
chr19	33698291	rs3745974	T	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	33698655	rs376080905	C	CGG	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.24;QD=40.63;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	33699664	rs57394649	T	TA	840.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	33700445	rs2303093	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr19	33702245	rs2241378	A	G	7351.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:3,266:0.99:269
chr19	33703103	rs11669156	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr19	33703372	rs55640155	G	C	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:164,165:0.50:329
chr19	33703706	rs11673535	A	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr19	33703971	.	C	T	127.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	33878198	rs1061338	A	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr19	33878837	rs17570	G	A	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.850;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:54,38:0.41:92
chr19	33902652	rs74988985	A	G	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=3.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=1.142;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:102,117:0.53:219
chr19	33904449	rs146629261	C	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	33953743	rs6510386	A	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	33953912	rs3745969	A	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:42,89:0.68:131
chr19	33991653	rs80314103	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	34003712	rs45564539	C	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:142,101:0.42:243
chr19	34012861	rs40500	C	T	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	34288178	.	TGTGTGTGTGTGC	T	309.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=61.52;MQRankSum=-1.876;QD=6.45;ReadPosRankSum=-0.400;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr19	34288184	rs138328510	TGTGTGCGCGC	T	1005.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr19	34288202	rs1139231	C	T	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	34291283	rs28609628	C	G	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:87,62:0.42:149
chr19	34291303	rs2303175	C	T	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:91,64:0.41:155
chr19	34302280	rs10426916	C	G	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:92,92:0.50:184
chr19	34304214	rs73039070	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr19	34304260	rs60235724	A	AT	1886.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	34513913	rs10418860	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:82,62:0.43:144
chr19	34687746	rs3119815	C	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	34706440	rs57270694	A	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	34710532	rs2297521	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	34710807	rs2599557	A	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	34712654	rs536367	C	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	34712736	rs537252	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	34717269	rs67394960	CAT	C	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	34810671	rs149401501	AG	A	802.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr19	34838998	rs328406	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	34842488	rs392340	T	C	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	34843761	rs397414	C	A	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:5,269:0.98:274
chr19	34843874	rs72121022	AGCCTGCCT	A	2800.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	34859457	rs2099099	G	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	34870256	rs2278266	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	34872355	.	G	GT	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.737;QD=2.06;ReadPosRankSum=-1.124;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:170,59:0.26:229
chr19	34872382	rs1864139	G	A	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:158,128:0.45:286
chr19	34885006	rs8108038	A	G	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr19	34890322	rs2301263	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr19	34904539	rs9653103	C	G	388.78	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr19	34922865	rs3217243	T	TGTATAAA	2140.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	34934949	.	GTT	G	169.87	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.97;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	34934967	.	T	G	211.84	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	34942872	rs2161472	A	T	1257.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.95;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	34954873	rs10412944	C	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	34959812	rs7258977	A	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.321;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr19	34959979	rs7259160	A	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr19	34971763	rs7257588	T	C	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,60:0.51:118
chr19	34971846	rs4344866	C	T	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:100,123:0.55:223
chr19	34971998	rs7248705	G	A	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,62:0.56:110
chr19	34972146	rs7248847	G	C	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:88,99:0.53:187
chr19	34973413	rs1465433	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	34973476	rs8107479	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	34981191	rs2902629	A	G	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	34985296	.	T	TA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=1.459;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr19	34985369	rs28550036	A	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	35036089	rs7259820	G	A	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	35175208	rs2290652	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:64,47:0.42:111
chr19	35175775	rs11543232	C	T	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:153,104:0.40:257
chr19	35231472	rs11426796	T	TA	641.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr19	35260281	rs2242129	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr19	35270362	rs11673342	G	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.382;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:39,41:0.51:80
chr19	35270543	rs7259475	G	T	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr19	35420841	rs2546001	A	G	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-1.618;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:90,95:0.51:185
chr19	35435373	rs148768619	A	G	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:111,111:0.50:222
chr19	35454604	rs2546028	AA	CG	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;JOINED;set=Intersection	GT:AD:AF:DP	0/1:54,68:0.56:122
chr19	35486775	.	C	T	358.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr19	35487055	rs118155315	C	T	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:108,135:0.56:243
chr19	35491326	rs3072398	A	AGCCCT	1045.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	35513896	rs4806072	C	T	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr19	35533550	rs11399986	A	AC	1972.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	35541330	rs57035236	TA	T	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	35550386	.	T	TA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.624;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr19	35550878	rs45512696	C	T	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:91,121:0.57:212
chr19	35551428	rs58895965	C	A	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:97,135:0.58:232
chr19	35556123	rs2305744	G	A	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	35556281	rs2305745	G	A	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	35556300	rs2305746	A	G	5082.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	35556357	rs2305747	C	T	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	35556640	rs1688031	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	35556659	rs1672991	A	G	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	35556744	rs1688030	T	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	35557260	rs1042328	T	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr19	35577870	rs7250814	G	A	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:149,157:0.51:306
chr19	35590180	rs1687994	T	A	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	35597215	rs10422803	C	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	35597352	rs2445826	T	C	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	35597462	rs10424084	A	G	4615.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:172,210:0.55:382
chr19	35597620	rs10423723	C	T	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:123,130:0.51:253
chr19	35597729	rs7258700	C	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr19	35602014	rs4806085	T	C	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	35602338	rs11665663	T	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.723;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr19	35602445	rs199877070	TGGG	T,TGG	281.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=35.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:0,4,4:0.50,0.50:8
chr19	35608092	rs1006162	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.06;ReadPosRankSum=-0.812;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	35608148	rs1688021	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr19	35609972	rs10543115	GGAC	G	2541.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr19	35609981	rs10426785	C	T	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr19	35610245	rs2278994	A	G	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:76,82:0.52:158
chr19	35612159	rs2290649	C	G	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:76,70:0.48:146
chr19	35614253	rs112343981	G	GGT	1344.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr19	35614336	rs1672974	T	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:106,72:0.40:178
chr19	35616087	rs3826989	G	A	1680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=5.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.252;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:68,82:0.55:150
chr19	35622695	rs1673007	A	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	35624890	rs11666576	C	T	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	35642685	rs117378441	G	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr19	35648264	rs12980648	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr19	35648365	rs1688005	T	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:44,63:0.59:107
chr19	35649324	rs1633915	C	G	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	35650593	rs4806093	G	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:98,79:0.45:177
chr19	35651531	rs1617607	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	35655151	rs1672994	T	C	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	35657351	rs8106303	A	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	35660450	rs2285515	T	C	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:42,65:0.61:107
chr19	35660508	rs12110	G	A	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	35660546	rs1046294	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr19	35715641	rs2291532	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr19	35716144	.	G	A	446.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr19	35718819	rs542977	C	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr19	35719020	rs541169	C	T	6081.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:205,276:0.57:481
chr19	35719106	rs565791	A	G	10984.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr19	35719257	rs11673347	G	A	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr19	35719577	rs34873156	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	35739702	rs16970163	G	A	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr19	35741456	rs2073900	T	C	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:171,151:0.47:322
chr19	35757250	rs916147	G	A	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:254,194:0.43:448
chr19	35757427	rs34259399	G	A	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:83,132:0.61:215
chr19	35758275	rs142507475	G	GGGA	7334.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	35760167	.	G	C	176	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=3;HapScore=2;MGOF=13;MMLQ=24;MQ=60.0;NF=2;NR=8;PP=176;QD=21.0771212547;SC=CCGCGGGCCCGGCTCAAAATG;SbPval=0.56;Source=Platypus;TC=11;TCF=2;TCR=9;TR=10;WE=35760175;WS=35760157;set=Platypus	GT:AD:AF:DP	1/1:1,10:0.91:11
chr19	35782958	rs2301599	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.48;ReadPosRankSum=1.383;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	35785378	rs55976703	C	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr19	35786500	.	T	A	1015.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr19	35790503	rs3746248	G	A	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:130,120:0.48:250
chr19	35793589	rs1126770	C	T	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:104,110:0.51:214
chr19	35800720	rs10411883	G	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	35832910	.	GTCCTTCCTTCCTTCCT	GTCCTTCCTTCCT,G	2152	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.08;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=22;MQ=58.3;NF=1,1;NR=18,18;PP=2152,1815;QD=113.473684211;SC=GTGGTGGTCAGTCCTTCCTTC;SbPval=0.27;Source=Platypus;TC=61;TCF=1;TCR=60;TR=19,19;WE=35832933;WS=35832900;set=Platypus	GT:AF:DP	0/1:0.31:61
chr19	35836855	rs10413526	C	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	35836859	rs4805120	A	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	35843086	rs2301151	G	A	7610.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr19	35849926	rs79251979	G	A	4657.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:213,219:0.51:432
chr19	35850672	rs142125121	T	C	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.094;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=45.21;MQRankSum=-0.353;QD=6.73;ReadPosRankSum=-0.575;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:63,29:0.32:92
chr19	35850863	rs117058012	A	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	35863141	rs201960715	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.36;MQRankSum=0.842;QD=12.58;ReadPosRankSum=-1.803;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	35898641	rs16970293	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:60,50:0.45:110
chr19	35898796	rs112270905	T	TC	3161.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:149,111:0.43:260
chr19	35898899	rs16970294	A	G	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:138,84:0.38:222
chr19	35899037	rs113510419	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	35899068	rs142160831	GTGA	G	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	35978299	rs7976	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr19	35978458	rs17638216	G	A	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr19	35978567	rs62111717	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:92,53:0.37:145
chr19	35979696	rs10410228	C	T	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-1.233;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chr19	35991043	rs11666154	G	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=-0.753;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:44,30:0.41:74
chr19	35991373	rs2293695	C	T	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr19	35991442	rs909072	T	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	35992691	rs8100640	A	G	3813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-2.113;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:258,193:0.43:451
chr19	35993919	rs8107732	A	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr19	35994126	rs8106676	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=2.633;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	35994376	rs149163465	GTT	G	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=33.87;ReadPosRankSum=-0.140;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr19	35994384	rs3829678	T	G	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.62;ReadPosRankSum=-1.130;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr19	35994390	rs3829677	T	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=35.86;ReadPosRankSum=-0.967;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr19	35997279	.	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.454;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	36003390	.	G	A	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.637;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:164,54:0.25:218
chr19	36004106	rs4806163	A	G	6112.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:358,290:0.45:648
chr19	36015521	rs58183088	C	T	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr19	36015652	rs17705633	C	T	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:120,126:0.51:246
chr19	36015865	rs2285511	A	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	36017469	rs62113963	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr19	36017928	rs10775583	G	C	7484.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:420,368:0.47:788
chr19	36033825	rs2293681	G	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:61,80:0.57:141
chr19	36038390	rs7599	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr19	36044524	rs2251124	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	36045772	rs2733739	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	36048741	rs2230181	G	T	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.824;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-1.742;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:14,27:0.66:41
chr19	36050969	rs2733743	A	G	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	36054018	rs7247310	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.95;ReadPosRankSum=-0.532;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	36054032	rs57302216	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.74;ReadPosRankSum=-0.170;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr19	36054605	rs73597298	T	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.691;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr19	36105917	rs34572637	A	G	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:61,107:0.64:168
chr19	36108829	rs200550489	C	T	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:159,126:0.44:285
chr19	36113658	rs2285414	A	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:66,78:0.54:144
chr19	36135279	rs3835005	C	CT	4611.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	36145409	rs377609041	CA	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.491;QD=2.43;ReadPosRankSum=0.448;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:50,26:0.34:76
chr19	36168663	rs10413852	G	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	36168914	rs2285421	T	C	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.748;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:90,95:0.51:185
chr19	36207510	rs1052491	G	A	7613.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:282,351:0.55:633
chr19	36214632	rs11373774	A	AG	896.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	36217884	.	CAAAAAAAAAAAAA	C	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=-0.233;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	36228954	rs2242522	G	T	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	36236120	rs231597	A	G	13565.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr19	36243089	rs170758	T	C	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	36243813	rs231243	G	A	8290.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	36258937	rs5827939	AG	A	4650.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	36279862	rs59882609	AG	A	1129.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	36322509	rs466452	G	A	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	36322601	rs4806213	T	C	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.533;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:52,74:0.59:126
chr19	36342212	rs3814995	C	T	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:101,114:0.53:215
chr19	36351768	rs60849332	G	A	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:115,80:0.41:195
chr19	36351935	rs35854130	G	T	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:157,178:0.53:335
chr19	36355595	rs382789	A	G	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	36381062	rs192563958	A	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr19	36486445	rs7249826	G	C	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	36496121	rs10469279	A	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-1.324;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr19	36497358	rs2285422	C	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	36501445	rs2073894	C	T	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr19	36508392	rs2073896	A	G	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr19	36517655	rs10418015	C	T	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr19	36536938	rs7258807	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	36549690	rs11538454	C	T	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr19	36558113	rs12608517	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-0.876;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr19	36564653	rs11669890	C	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr19	36574063	rs45567532	C	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr19	36575645	rs2301734	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr19	36577579	rs4806263	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:66,48:0.42:114
chr19	36583651	rs61494900	G	A	3457.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:174,171:0.50:345
chr19	36584904	rs2301737	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr19	36585174	rs62109756	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr19	36590329	rs2285745	T	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr19	36594063	rs17851502	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:178,118:0.40:296
chr19	36594659	rs2074435	A	T	5152.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:295,255:0.46:550
chr19	36594904	rs200752033	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr19	36595436	rs1008328	A	C	7316.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:3,265:0.99:268
chr19	36602097	rs2075472	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	36603703	rs2072605	T	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr19	36605647	rs2227260	T	C	1697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=2.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.531;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:124,87:0.41:211
chr19	36605794	rs2231568	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr19	36606379	rs199646187	C	CCAG	954.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr19	36612396	rs2075474	A	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:96,67:0.41:163
chr19	36640769	rs14100	T	C	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	36642310	rs2008683	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	36642561	.	G	GC	1512.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=12.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-0.939;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:65,43:0.40:108
chr19	36642562	rs2285599	A	C	1521.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.105;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=12.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=-0.844;SOR=0.143;set=HC	GT:AD:AF:DP	0/1:67,44:0.40:111
chr19	36642884	rs17879437	T	C	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.511;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr19	36674305	rs4805162	A	G	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:141,130:0.48:271
chr19	36685310	rs2287897	C	T	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=6.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=-0.136;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr19	36685316	rs2287898	T	C	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=8.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-0.855;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	36685753	rs7259854	A	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	36686205	rs56206115	G	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr19	36727365	rs2070132	G	A	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:107,124:0.54:231
chr19	36728290	rs4806293	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	36851271	rs79809887	C	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr19	36858944	rs11084857	A	G	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr19	36885067	rs17206365	A	T	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=5.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=0.274;SOR=1.354;set=HC	GT:AD:AF:DP	0/1:43,45:0.51:88
chr19	36896668	rs142442911	GTAAT	G	658.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	36900778	rs2271842	A	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr19	36981218	rs2967473	G	A	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr19	37038092	rs2278168	T	C	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:55,76:0.58:131
chr19	37039069	rs2912444	A	C	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:176,149:0.46:325
chr19	37063218	rs11448179	C	CA	1138.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:63,74:0.54:137
chr19	37064240	rs2967442	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr19	37065732	rs2912406	A	C	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-1.387;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:46,35:0.43:81
chr19	37068081	rs2912410	G	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	37117302	rs3108171	A	G	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	37117490	rs150193342	A	G	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:140,90:0.39:230
chr19	37118439	rs61732180	C	T	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:90,66:0.42:156
chr19	37134864	rs62112477	C	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	37147330	rs12981751	T	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr19	37185813	rs36094586	CT	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-1.136;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	37203249	rs1830031	T	C	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	37210529	rs3108200	A	G	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:113,64:0.36:177
chr19	37210805	rs3108201	C	T	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	37211557	rs140175549	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr19	37238537	.	CA	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-1.005;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr19	37241141	rs1673082	A	G	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:102,101:0.50:203
chr19	37241781	rs2462576	G	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	37398898	.	G	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.759;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.031;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:112,28:0.20:140
chr19	37441111	rs571294	C	T	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:91,119:0.57:210
chr19	37441462	rs546589	T	C	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,72:0.47:152
chr19	37441980	rs1644634	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr19	37442078	rs4806380	T	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	37689998	rs12459637	C	T	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:94,82:0.47:176
chr19	37690375	rs73023557	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr19	37690420	rs1234250	C	T	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	37721404	rs56895666	T	TA	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=1.467;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:81,37:0.31:118
chr19	37726433	rs320880	G	A	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-0.475;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:131,84:0.39:215
chr19	37854580	rs3745764	C	T	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:146,127:0.47:273
chr19	37864925	rs61161652	A	AC	1320.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	37871316	.	A	G	534.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr19	37879852	rs376931538	C	CTGTG	2435.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:125,66:0.35:191
chr19	37879854	rs200420244	AT	A	2435.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:124,67:0.35:191
chr19	37918609	rs7254009	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	37958616	rs117373698	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr19	37958983	.	T	TTG	1052.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.86;ReadPosRankSum=1.096;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:22,31:0.58:53
chr19	37961148	rs199763868	G	GGT	1393.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr19	37966661	rs1236810	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	38028813	rs369737171	AT	A	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=1.472;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr19	38135403	rs2972458	T	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	38135444	rs71298747	C	CAAAAAG	6098.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	38189440	rs958305	T	C	8572.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr19	38189616	rs2075284	T	C	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	38190845	rs5827990	GT	G	645.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	38202516	rs2909097	A	C	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	38229378	rs1291	G	A	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	38229824	rs3095726	T	C	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	38230720	rs3752365	C	G	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	38377409	rs7252765	A	T	1615.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=0.646;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:2,63:0.97:65
chr19	38573149	rs10405667	G	C	1932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.658;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:140,98:0.41:238
chr19	38573802	rs1568975	T	C	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:190,138:0.42:328
chr19	38579285	rs855638	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	38610504	rs59185302	G	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr19	38610542	rs59924887	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	38621473	rs861304	G	A	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	38652993	rs332864	C	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,49:0.39:126
chr19	38673126	rs3833273	GT	G	506.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr19	38696708	rs74573108	G	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=2.920;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr19	38696714	rs10419131	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.03;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	38696847	rs149733495	G	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr19	38704192	rs28493214	A	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr19	38704561	.	G	A	24	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=17;MMLQ=16;MQ=60.0;NF=1;NR=3;PP=24;QD=14.6928031368;SC=CCACGTGGCCGGCAGCAGTCC;SbPval=0.34;Source=Platypus;TC=10;TCF=1;TCR=9;TR=4;WE=38704569;WS=38704551;set=Platypus	GT:AD:AF:DP	1/0:6,4:0.40:10
chr19	38708329	rs2304174	A	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr19	38708398	rs2304175	A	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,45:0.48:94
chr19	38709532	rs2288907	C	G	4326.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:225,195:0.46:420
chr19	38709552	rs2288909	C	T	4700.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:278,225:0.45:503
chr19	38709568	rs2255456	C	T	5021.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:318,251:0.44:569
chr19	38778617	rs8104823	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr19	38794786	rs76682100	T	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	38794895	rs2304176	T	C	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.279;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:72,41:0.36:113
chr19	38795159	rs2304177	G	A	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:115,110:0.49:225
chr19	38795250	rs45437199	G	A	3322.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:170,167:0.50:337
chr19	38795546	rs139805446	TGAA	T	2348.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,62:0.48:130
chr19	38798086	rs3178327	T	C	2553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=0.946;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:189,133:0.41:322
chr19	38798226	rs147311387	G	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:65,86:0.57:151
chr19	38800019	rs45552232	C	T	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:97,161:0.62:258
chr19	38800165	rs3900981	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr19	38806331	rs11672826	G	C	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:76,78:0.51:154
chr19	38817110	rs7250755	A	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	38817486	rs3745951	T	C	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:146,170:0.54:316
chr19	38817876	rs34989303	G	A	4040.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:161,190:0.54:351
chr19	38826656	rs59898212	G	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	38826947	rs56849284	T	C	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=1.579;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:27,43:0.61:70
chr19	38827960	rs2302182	T	C	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:106,73:0.41:179
chr19	38847431	rs2286475	T	C	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=0.817;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:48,47:0.49:95
chr19	38848796	rs4802351	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	38848861	rs8106895	C	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr19	38850246	rs60071299	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=1.665;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr19	38853297	rs2302183	G	A	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-0.672;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:94,59:0.39:153
chr19	38861333	rs1052375	G	A	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:91,116:0.56:207
chr19	38871622	rs11541756	C	T	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:68,88:0.56:156
chr19	38872778	rs1131182	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr19	38877997	rs62123482	G	T	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-1.094;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:50,61:0.55:111
chr19	38882863	rs151129136	CCCT	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.792;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:47,7:0.13:54
chr19	38912597	rs4310986	G	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.272;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr19	38912764	rs892055	A	G	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-0.658;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:87,85:0.49:172
chr19	38935280	rs2229139	A	G	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:120,136:0.53:256
chr19	38935350	rs35018208	T	TC	5559.73	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:189,222:0.54:411
chr19	38939408	rs10406027	T	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr19	38939505	rs4476278	T	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	38942714	rs4802469	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr19	38943728	rs12460768	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	38945851	rs7254832	T	C	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,53:0.62:86
chr19	38946182	rs2288888	G	A	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:163,155:0.49:318
chr19	38946215	rs2288889	G	C	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:133,127:0.49:260
chr19	38948356	rs2071085	T	C	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:79,112:0.59:191
chr19	38949904	rs3745847	C	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.401;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:50,53:0.51:103
chr19	38950947	rs2304147	C	T	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr19	38953996	rs2304148	A	G	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	38956803	rs2228069	G	A	2578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.134;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:109,124:0.53:233
chr19	38959680	rs11083462	C	T	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:153,121:0.44:274
chr19	38965952	rs55845760	T	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,70:0.58:121
chr19	38976177	rs16972651	T	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr19	38979741	rs74778515	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr19	38980118	rs16972654	C	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr19	38981003	rs17708009	C	T	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:91,70:0.43:161
chr19	38981284	rs2228068	A	G	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:99,87:0.47:186
chr19	38983000	.	C	CA	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=4.925;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.077;QD=5.57;ReadPosRankSum=1.565;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	38983180	rs35364374	G	T	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr19	38990336	rs2228071	C	T	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.862;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.04;ReadPosRankSum=0.221;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:14,31:0.69:45
chr19	38990345	rs2229147	C	T	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.73;ReadPosRankSum=2.156;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr19	38990676	rs2234709	C	A	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.083;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.920;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:56,80:0.59:136
chr19	38991516	rs2228072	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:129,87:0.40:216
chr19	38991543	rs2071088	G	A	1779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=0.110;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:147,95:0.39:242
chr19	38991640	rs2960323	C	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:71,93:0.57:164
chr19	38993372	rs1469695	A	G	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	38993418	.	GGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGGAGGA	G	1562.73	.	AC=2;AF=1.00;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	38993547	rs2229142	C	T	7314.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr19	38993638	rs1469699	A	G	8541.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	38994910	rs2229144	G	A	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr19	38995152	rs2915949	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	38995355	rs10532729	ACCT	A	3119.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	38995438	rs2960340	T	C	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=26.84;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	38995510	rs2915951	T	C	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	38995975	rs2915952	G	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	38996066	rs2915953	A	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	38996620	rs2960342	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.54;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	38996623	rs2960343	T	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	38996640	rs2915954	A	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	38996990	rs2229146	T	C	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	38997076	rs2960344	C	T	6572.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	38997214	rs2960345	T	G	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	38997323	rs2915957	T	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	38997364	rs35973146	T	TTCA	5017.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	38997459	rs2915958	G	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	38997609	rs2915959	T	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	38997635	rs2960346	A	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr19	38997679	rs2960347	G	T	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	38998497	rs5828009	G	GC	1952.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	39002614	rs2960337	T	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr19	39002725	rs2071089	A	G	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	39005937	rs2915942	G	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr19	39010023	rs2229145	C	T	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr19	39010053	rs41274330	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr19	39014642	rs73544616	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,68:0.76:90
chr19	39017813	rs189279128	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr19	39018161	rs112541479	A	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.265;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	39018280	rs2960354	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr19	39028759	rs2071091	T	C	68.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.77;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr19	39034322	rs45555835	G	A	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:91,114:0.56:205
chr19	39051655	rs113916872	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr19	39051680	.	T	TA	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=1.871;QD=3.82;ReadPosRankSum=0.364;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr19	39056291	rs113579185	C	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=2.521;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	39061169	rs111512034	C	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr19	39061258	rs35959206	C	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.615;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:60,49:0.45:109
chr19	39062775	rs140750876	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr19	39100737	rs13345885	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr19	39101669	rs2287733	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr19	39101870	rs2287732	T	C	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr19	39106797	rs3217236	AG	A	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	39109975	rs2232997	C	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:101,77:0.43:178
chr19	39191383	rs2112649	G	C	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	39191544	rs73038909	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr19	39195558	rs2287728	C	T	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:128,132:0.51:260
chr19	39196736	rs11553600	G	A	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-0.730;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:55,98:0.64:153
chr19	39200843	rs12984794	C	T	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:129,122:0.49:251
chr19	39208795	rs7248577	C	T	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:179,143:0.44:322
chr19	39212052	rs34026184	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr19	39212392	rs77822825	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:97,115:0.54:212
chr19	39214411	rs62120068	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:72,51:0.41:123
chr19	39215172	rs12986337	T	C	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:121,81:0.40:202
chr19	39218694	rs12981131	A	G	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=1.330;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:85,71:0.46:156
chr19	39219050	.	G	GCTCCTC	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.344;QD=11.76;ReadPosRankSum=-0.615;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	39219124	rs12975079	T	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	39219780	rs1136956	T	C	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	39221715	rs141208726	CCCATGCCCCA	C	1718.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr19	39224413	rs4801861	A	G	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	39224902	rs35807146	G	A	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:140,107:0.43:247
chr19	39224934	rs62120072	C	T	2767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=7.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.911;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:159,141:0.47:300
chr19	39225046	rs45599933	G	A	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.963;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:58,64:0.52:122
chr19	39226596	.	GGTT	G	84	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=4;HapScore=4;MGOF=231;MMLQ=24;MQ=46.05;NF=2;NR=0;PP=84;QD=50.5;SC=GCGGGGCGGGGGTTCTGGGGG;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=39226610;WS=39226594;set=Platypus	GT:AD:AF:DP	1/0:0,2:1.00:2
chr19	39226602	.	G	GGGC	106	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=4;HapScore=4;MGOF=231;MMLQ=28;MQ=51.33;NF=2;NR=0;PP=106;QD=61.0;SC=CGGGGGTTCTGGGGGCGGGGC;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=39226610;WS=39226594;set=Platypus	GT:AD:AF:DP	1/0:0,2:1.00:2
chr19	39226927	rs62120074	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	39227107	rs62120075	T	G	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.099;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr19	39227244	.	G	GAGGGGCGTCGGGGCAGGGGAGA	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=23.735;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-3.409;QD=2.62;ReadPosRankSum=-6.235;SOR=3.022;set=HC	GT:AD:AF:DP	0/1:128,22:0.15:150
chr19	39228244	rs73038948	T	C	3534.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:127,165:0.57:292
chr19	39228868	rs34488364	G	GCA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	39229089	rs12983010	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr19	39229316	rs12983550	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr19	39230748	rs34911882	C	G	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:85,56:0.40:141
chr19	39232968	rs35341175	C	CA	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.818;QD=6.37;ReadPosRankSum=-1.017;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	39233146	rs936524	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	39233221	rs1106372	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr19	39234511	rs4802775	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr19	39279713	rs4802853	A	G	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=20.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	39281540	rs147201724	T	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=5.42;ReadPosRankSum=0.812;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	39297007	rs74176466	C	CA	168.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	39299280	.	A	AAAAG	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-2.543;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr19	39306425	rs2075588	A	C	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	39307925	rs2287953	C	T	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	39360597	rs113728915	C	T	7439.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:378,367:0.49:745
chr19	39360720	rs8110393	G	A	6014.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	39361658	rs8100220	G	C	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	39364415	rs6508823	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	39366899	rs1529713	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	39367111	rs1001413	T	C	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	39370448	.	G	GT	182.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	39372244	rs2082435	C	G	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	39379855	rs11879010	G	A	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:135,128:0.49:263
chr19	39379906	rs11879029	G	A	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:110,90:0.45:200
chr19	39380030	rs11667030	C	T	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-1.373;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:44,47:0.52:91
chr19	39380030	.	CA	TG	642	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=14;NR=29;PP=642;QD=16.1736715084;SC=AGCTGAGATTCACACCCAGGC;SbPval=0.64;Source=Platypus;TC=87;TCF=30;TCR=57;TR=43;WE=39380039;WS=39380020;set=Platypus	GT:AD:AF:DP	0/1:44,43:0.49:87
chr19	39380031	rs11083483	A	G	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	39385532	rs10410544	T	C	14554.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr19	39385642	rs75327607	C	T	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,46:0.43:108
chr19	39390931	rs2053071	C	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	39398416	rs3136642	A	G	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr19	39399277	rs3136646	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	39400054	rs11404115	T	TA	1698.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,54:0.62:87
chr19	39406442	rs11670675	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,45:0.45:101
chr19	39407014	rs4801945	C	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr19	39408360	rs7508411	A	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	39408688	rs4803034	C	G	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	39409236	rs11083489	C	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	39410986	rs12460327	C	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	39412756	rs59946162	A	AT	1884.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:114,121:0.51:235
chr19	39416966	rs4803045	GA	TT	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;JOINED;set=Intersection	GT:AD:AF:DP	0/1:63,54:0.46:117
chr19	39421388	rs730078	A	G	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	39433299	rs8113389	A	G	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	39433497	rs11313800	GT	G	1735.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	39433499	rs57290038	T	G	1744.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	39435485	rs10416055	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	39435933	rs11672849	C	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	39437258	rs10568003	TCA	T	4799.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:94,122:0.56:216
chr19	39437270	rs2278412	G	A	7718.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	39437411	rs2278413	G	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	39517715	rs57724551	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	39522891	rs3848623	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	39589334	rs560364	G	A	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.33;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	39589518	rs190998143	T	C	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	39589520	rs371296886	CACCAGTCGGGGAAGGATGGGGTTGGAGGGAGGG	C	2707.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	39592138	rs1313617	C	T	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	39660277	rs75096376	C	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:172,116:0.40:288
chr19	39687592	rs12462614	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	39688815	rs12610064	C	T	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr19	39688901	rs12610093	G	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:33,60:0.65:93
chr19	39689943	rs12610530	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr19	39691136	rs11672471	C	A	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:93,115:0.55:208
chr19	39691216	rs11672475	A	T	4869.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:187,216:0.54:403
chr19	39691239	rs11672479	A	G	5481.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:216,258:0.54:474
chr19	39734220	rs4803217	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-3.874;QD=1.20;ReadPosRankSum=0.303;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr19	39734923	rs11881222	A	G	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:66,75:0.53:141
chr19	39735106	rs8103142	T	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.704;MLEAC=1;MLEAF=0.500;MQ=51.40;MQRankSum=-3.565;QD=12.02;ReadPosRankSum=1.353;SOR=1.344;set=HC	GT:AD:AF:DP	0/1:23,28:0.55:51
chr19	39735644	rs28416813	C	G	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr19	39745695	rs35963157	G	GC	3915.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:116,124:0.52:240
chr19	39760069	rs30481	G	C	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	39760635	rs372089263	T	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-11.167;QD=1.61;ReadPosRankSum=4.605;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:268,62:0.19:330
chr19	39798615	rs367736985	A	G	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=1.091;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:164,112:0.41:276
chr19	39805630	.	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.539;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr19	39888390	rs1057745	G	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr19	39913634	rs10407035	G	A	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:118,91:0.44:209
chr19	39914308	rs31725	C	T	1616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-0.233;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:141,87:0.38:228
chr19	39914331	rs116910532	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:152,98:0.39:250
chr19	39914748	rs31726	G	A	4341.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:300,207:0.41:507
chr19	39915637	rs31727	G	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:74,88:0.54:162
chr19	39915758	rs31728	C	G	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:136,128:0.48:264
chr19	39916110	rs16746	GGGA	G	553.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr19	39924129	rs566130	T	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:132,143:0.52:275
chr19	39926509	rs17628	A	C	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:175,126:0.42:301
chr19	39926521	rs17626	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:144,102:0.41:246
chr19	39932023	rs1865090	T	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr19	39932066	rs1865091	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	39936502	rs1932	G	A	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:105,106:0.50:211
chr19	39936693	rs2116932	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr19	39944082	rs1130180	C	T	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.367;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:35,68:0.66:103
chr19	39948871	rs376659194	CCCA	C	2544.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr19	39949764	rs1529733	C	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=0.012;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:67,46:0.41:113
chr19	39955351	rs62120671	G	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr19	39963828	rs45568533	T	A	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:215,178:0.45:393
chr19	39971622	rs2304221	C	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr19	39972766	rs62120691	G	A	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-2.248;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:71,48:0.40:119
chr19	39976464	rs4803245	C	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:121,87:0.42:208
chr19	39976734	rs4803247	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr19	39976969	rs1865094	T	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:119,62:0.34:181
chr19	39978610	rs74178079	GTGTA	G	1667.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr19	39994711	rs1110627	T	C	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-1.530;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:34,40:0.54:74
chr19	40009396	rs56149652	A	G	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:76,72:0.49:148
chr19	40009683	rs4802034	C	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:77,56:0.42:133
chr19	40023308	rs1123301	A	G	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:139,108:0.44:247
chr19	40030541	rs3746086	T	G	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.647;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=11.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=1.190;SOR=2.272;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr19	40030654	rs76765165	G	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:89,34:0.28:123
chr19	40093111	rs3764843	C	A	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	40096127	rs2233709	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	40149297	rs1860134	T	A	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	40149330	rs997104	G	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	40170053	rs8103033	G	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr19	40174119	rs1126159	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:67,92:0.58:159
chr19	40174236	rs7258833	G	A	10301.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr19	40196611	rs35541195	C	T	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=0.366;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:31,50:0.62:81
chr19	40197924	rs4830	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	40199914	rs10755	C	G	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	40224833	rs375867	A	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr19	40224869	rs391646	T	A	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	40224887	rs391660	T	C	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	40224901	rs453827	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	40224986	rs384138	A	G	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	40225168	rs399641	T	A	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	40225646	rs17608	G	A	4821.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	40228802	rs403831	C	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=0.394;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr19	40318086	rs12977762	AG	GA	5145.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;JOINED;set=Intersection	GT:AD:AF:DP	0/1:216,141:0.39:357
chr19	40319227	rs56077108	C	T	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.218;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:37,43:0.54:80
chr19	40325409	.	G	A	1780.77	.	AC=1;AF=0.500;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr19	40328615	rs616650	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr19	40337080	rs11881344	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	40360845	rs3760929	C	T	3584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=1.808;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:155,173:0.53:328
chr19	40360928	rs1053686	G	A	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:122,94:0.44:216
chr19	40362573	rs10422312	A	G	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=0.832;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:32,39:0.55:71
chr19	40366362	rs3855679	G	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-2.110;QD=10.98;ReadPosRankSum=-0.291;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:35,41:0.54:76
chr19	40366374	rs2053089	G	C	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-1.896;QD=10.14;ReadPosRankSum=-1.049;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:33,35:0.51:68
chr19	40368180	.	G	A	178	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=28;MQ=43.23;NF=10;NR=0;PP=178;QD=21.2771212547;SC=AGCACCAAGAGACAGAGAGAC;SbPval=1.0;Source=Platypus;TC=30;TCF=23;TCR=7;TR=10;WE=40368188;WS=40368177;set=Platypus	GT:AD:AF:DP	1/0:20,10:0.33:30
chr19	40368268	rs141933551	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.30;MQRankSum=-0.509;QD=0.41;ReadPosRankSum=0.917;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:79,15:0.16:94
chr19	40368274	.	C	A	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.653;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.34;MQRankSum=-7.382;QD=18.37;ReadPosRankSum=-0.016;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:27,79:0.75:106
chr19	40368280	rs62106924	A	G	2426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.284;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.440;MLEAC=1;MLEAF=0.500;MQ=48.53;MQRankSum=-7.568;QD=16.51;ReadPosRankSum=0.338;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:38,109:0.74:147
chr19	40368376	rs75204711	A	C	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.01;MQRankSum=-0.307;QD=1.44;ReadPosRankSum=1.021;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:203,45:0.18:248
chr19	40368395	rs28472548	C	T	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:90,134:0.60:224
chr19	40368478	rs77170940	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr19	40368498	rs12610683	AA	CC	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	40373889	.	CCA	TTG	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.555;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=2.408;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-3.254;QD=5.27;ReadPosRankSum=1.014;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:83,18:0.18:101
chr19	40374034	rs138587194	A	G	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.415;MLEAC=1;MLEAF=0.500;MQ=46.07;MQRankSum=-1.542;QD=13.38;ReadPosRankSum=-1.469;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:50,77:0.61:127
chr19	40374105	.	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.45;MQRankSum=1.463;QD=13.45;ReadPosRankSum=0.639;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr19	40376261	.	A	G	117	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=44.29;NF=7;NR=1;PP=117;QD=18.9714015684;SC=GGGCTGATGAACAGTGGGAGG;SbPval=0.85;Source=Platypus;TC=32;TCF=25;TCR=7;TR=8;WE=40376269;WS=40376251;set=Platypus	GT:AD:AF:DP	0/1:24,8:0.25:32
chr19	40376803	.	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.429;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=18.576;MLEAC=1;MLEAF=0.500;MQ=48.53;MQRankSum=3.697;QD=4.19;ReadPosRankSum=0.427;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr19	40376880	rs75009537	TG	CC	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr19	40382178	rs76154158	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=0.319;QD=6.74;ReadPosRankSum=1.036;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	40384518	rs149161739	T	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.284;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=1.177;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr19	40384527	.	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.601;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.586;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr19	40384605	rs143306165	A	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.38;MQRankSum=-0.502;QD=19.91;ReadPosRankSum=-0.423;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	40384623	rs151293840	A	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.10;MQRankSum=-0.589;QD=22.31;ReadPosRankSum=0.712;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	40392359	rs56242719	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.00;QD=26.92;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	40392482	rs62108883	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.11;QD=32.48;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	40392588	rs62108885	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr19	40392631	rs80068592	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr19	40392719	rs200664901	G	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.50;MQRankSum=0.524;QD=14.78;ReadPosRankSum=-0.072;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	40392802	rs149844303	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=12.86;ReadPosRankSum=-0.262;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	40405847	rs2011817	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	40406019	rs2355719	G	A	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.169;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.539;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=5.511;QD=19.66;ReadPosRankSum=-1.119;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:5,51:0.91:56
chr19	40407901	rs3901397	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr19	40408146	rs56186636	G	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr19	40408532	rs36106401	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr19	40408821	rs11083543	C	G	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:128,92:0.42:220
chr19	40408857	rs4802064	T	C	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	40408910	rs11083544	T	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:104,57:0.35:161
chr19	40419558	rs12459958	A	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr19	40420087	rs12460562	G	A	5276.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:177,233:0.57:410
chr19	40421612	rs34939346	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr19	40424163	rs142142987	G	A	4127.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:145,174:0.55:319
chr19	40711333	rs892117	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr19	40719076	rs1129156	T	C	4051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=1.852;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:135,193:0.59:328
chr19	40719588	.	C	A	589.77	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,33:0.33:101
chr19	40720079	rs3746005	C	T	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr19	40723844	rs79666308	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr19	40739513	rs33933140	A	G	2340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.082;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:88,111:0.56:199
chr19	40739721	rs2304186	G	T	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr19	40742320	rs2304189	T	C	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:84,68:0.45:152
chr19	40744697	rs3730051	T	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:151,114:0.43:265
chr19	40770982	rs3730050	T	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=9.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.349;SOR=0.032;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	40788641	rs11880261	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	40832399	rs189153546	G	A	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:89,113:0.56:202
chr19	40839664	rs8103796	A	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	40854331	rs10414431	A	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:121,91:0.43:212
chr19	40875800	rs3745198	C	G	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.48;ReadPosRankSum=-0.181;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:23,27:0.54:50
chr19	40875810	rs3745199	C	G	1138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.63;ReadPosRankSum=0.250;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:26,32:0.55:58
chr19	40882486	rs3745200	C	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr19	40883844	rs45469694	A	C	5254.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:134,235:0.64:369
chr19	40884152	rs7368	G	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:180,139:0.44:319
chr19	40884160	rs4635	G	A	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:137,176:0.56:313
chr19	40886223	rs56237517	G	A	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:101,137:0.58:238
chr19	40900865	rs268674	C	T	5497.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	40901011	rs3745202	G	C	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:153,189:0.55:342
chr19	40901496	rs268673	T	C	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:79,109:0.58:188
chr19	40901604	rs268672	A	G	2419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.20;ReadPosRankSum=0.780;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:38,62:0.62:100
chr19	40901614	rs268671	A	G	2458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=-0.015;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:35,63:0.64:98
chr19	40904602	rs744389	G	A	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:79,127:0.62:206
chr19	40928944	rs4150992	A	G	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:136,149:0.52:285
chr19	40929363	rs268687	T	C	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	40929553	rs268686	G	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	40947305	rs7259644	A	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	40947373	rs10560834	GGATC	G	2482.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	40947448	rs2887292	A	G	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:81,69:0.46:150
chr19	40947751	rs35314597	G	A	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.196;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:38,41:0.52:79
chr19	40957441	rs373095840	CTT	C,CT	410.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.252;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:7,16,14:0.43,0.38:37
chr19	40964312	rs1061197	G	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:85,59:0.41:144
chr19	40978453	rs34004825	G	A	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-1.074;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:73,72:0.50:145
chr19	40978640	rs73931308	G	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr19	41010045	rs10420988	G	T	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.55;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	41010047	rs843779	C	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	41056410	rs35964729	AT	A	179.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	41060616	rs2242131	A	G	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	41062902	rs57040779	A	AC	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.34;ReadPosRankSum=-0.094;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	41071177	.	A	AAAAAG	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=5.263;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=3.084;QD=6.77;ReadPosRankSum=-2.588;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr19	41071701	rs62107869	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	41072890	rs1165835	C	A	262.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	41072893	rs113083491	C	A	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	41075662	rs1165837	G	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	41078220	rs1165841	G	C	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	41081295	rs62107872	T	A	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=1.381;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:48,53:0.52:101
chr19	41082868	rs16974365	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	41082993	rs35684786	GC	G	281.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=1.717;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr19	41083444	rs2290682	C	T	18753.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr19	41083854	rs67613859	TAC	T	672.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.573;QD=23.20;ReadPosRankSum=-0.060;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr19	41084471	rs3217684	A	AG	1563.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	41095086	.	TGAGGACAGTCCTGTCCAACAGGGAGG	T	5626.73	.	AC=2;AF=1.00;AN=2;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr19	41096189	rs396118	A	G	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	41104977	rs55815263	C	T	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.161;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:47,55:0.54:102
chr19	41111069	rs2303729	G	A	3475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=1.224;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:203,175:0.46:378
chr19	41114065	rs2303728	G	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:76,67:0.47:143
chr19	41116397	rs1318544	G	A	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.210;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:56,55:0.50:111
chr19	41117624	rs2278246	T	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr19	41117869	rs1131620	A	G	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-0.708;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:114,73:0.39:187
chr19	41118056	rs1051303	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr19	41119273	rs12611045	G	C	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:242,174:0.42:416
chr19	41120083	rs2369006	A	T	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr19	41122671	rs10403963	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr19	41123093	rs59030801	A	AG	4266.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	41125159	rs7259237	A	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr19	41125177	rs7259554	G	C	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:54,60:0.53:114
chr19	41128162	rs12979249	C	T	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	41128309	rs10880	C	T	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=0.328;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:55,64:0.54:119
chr19	41128415	rs35079932	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr19	41129079	rs11376199	C	CT	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=0.500;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr19	41129842	rs7367	C	T	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.043;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:99,66:0.40:165
chr19	41131675	rs2278242	C	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr19	41132022	rs2278243	C	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	41133844	rs41512448	T	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	41135475	rs1051481	G	A	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr19	41173880	rs2604901	C	T	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:126,74:0.37:200
chr19	41173892	rs141662737	CTGCTGT	C	2611.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:139,74:0.35:213
chr19	41186879	rs2561545	A	G	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:127,98:0.44:225
chr19	41188847	rs146512935	C	G	4197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=3.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=3.676;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:154,200:0.56:354
chr19	41192610	rs112258640	T	TTGAG	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	41192617	rs59449188	T	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	41206208	rs2246095	A	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:125,72:0.37:197
chr19	41209914	.	C	G	415.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	41211056	rs3865452	T	C	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr19	41235038	rs10420651	C	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr19	41235120	rs10420685	A	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:88,84:0.49:172
chr19	41251180	rs2369302	T	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr19	41255309	.	A	AC	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.41;ReadPosRankSum=-0.464;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	41255500	rs2254343	C	G	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	41255603	rs2254338	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	41257176	rs1457141	G	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	41257396	rs2607418	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr19	41263403	rs2230694	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr19	41265201	rs736625	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr19	41269481	rs2249854	T	C	4116.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:263,209:0.44:472
chr19	41270866	rs10412175	C	T	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:101,115:0.53:216
chr19	41271104	rs13108	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr19	41281700	rs2233156	C	T	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:207,156:0.43:363
chr19	41283365	rs2233159	C	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=10.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=2.407;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr19	41284398	rs2279699	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.359;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:32,25:0.44:57
chr19	41286163	rs2287691	C	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr19	41307170	rs2545763	G	A	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:121,103:0.46:224
chr19	41324684	rs2545771	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr19	41324746	rs2545772	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.442;MLEAC=1;MLEAF=0.500;MQ=48.66;MQRankSum=0.703;QD=6.13;ReadPosRankSum=0.621;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr19	41324832	rs2545773	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.70;QD=27.32;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	41332171	rs78011401	C	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:102,51:0.33:153
chr19	41349640	rs7248240	G	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	41349786	rs145014075	G	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.339;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=48.49;MQRankSum=-6.981;QD=1.72;ReadPosRankSum=1.323;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:375,92:0.20:467
chr19	41350489	rs2002975	C	G	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr19	41350594	rs2002977	G	A	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:94,100:0.52:194
chr19	41350664	rs1809810	A	T	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	41352762	rs4079369	G	C	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:90,91:0.50:181
chr19	41352840	rs1809811	G	A	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:173,112:0.39:285
chr19	41354442	rs57607700	C	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr19	41354688	rs148803816	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-7.011;QD=1.11;ReadPosRankSum=-0.979;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:53,7:0.12:60
chr19	41354712	rs8192725	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	41356188	rs56283800	C	T	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:197,114:0.37:311
chr19	41356281	rs1137115	T	C	9337.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	41381647	rs12460590	A	C	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	41381683	rs71358943	G	T	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.595;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.35;MQRankSum=-0.477;QD=14.83;ReadPosRankSum=-0.319;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr19	41382476	rs75152309	T	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:117,69:0.37:186
chr19	41382607	rs2316206	AG	CA	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=56.99;QD=43.74;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	41382612	rs2316208	CG	TA	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=56.68;QD=47.36;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	41382645	rs3865455	G	A	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.83;QD=43.99;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	41382653	rs2388869	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.27;QD=44.03;SOR=3.334;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	41382655	rs2316210	T	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.82;QD=47.29;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	41382665	rs3852869	G	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.24;QD=45.80;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	41383217	rs2302987	T	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:83,50:0.38:133
chr19	41383344	rs2302988	T	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	41383378	rs16958956	C	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	41383799	rs3869579	G	A	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.088;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.676;QD=10.77;ReadPosRankSum=1.376;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:97,112:0.54:209
chr19	41384533	rs113986398	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	41384578	rs4453619	G	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;MQ=59.91;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr19	41384637	rs4079367	C	T	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:70,84:0.55:154
chr19	41384675	rs4079366	T	C	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	41384702	rs117539170	T	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:128,54:0.30:182
chr19	41384781	rs112946838	T	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.169;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=11.685;MLEAC=1;MLEAF=0.500;MQ=53.78;MQRankSum=-6.118;QD=1.89;ReadPosRankSum=0.761;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr19	41386136	rs4142867	A	C	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr19	41386282	rs3815705	G	C	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr19	41386420	rs56081734	A	C	2556.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:176,127:0.42:303
chr19	41386486	rs3815708	CA	AG	1770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-6.784;QD=12.47;ReadPosRankSum=-1.734;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:93,49:0.35:142
chr19	41386494	rs3815710	A	C	1681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-6.915;QD=12.55;ReadPosRankSum=-2.337;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:87,47:0.35:134
chr19	41386527	rs58798281	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr19	41386544	rs71337574	C	G	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.588;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-5.319;QD=8.18;ReadPosRankSum=-0.236;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr19	41386547	rs74219554	G	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-4.665;QD=9.37;ReadPosRankSum=0.891;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr19	41387620	rs10425150	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr19	41387647	rs10425169	A	G	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.880;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-6.192;QD=9.20;ReadPosRankSum=-0.514;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:73,29:0.28:102
chr19	41387656	rs10425176	A	T	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.779;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-6.927;QD=9.29;ReadPosRankSum=0.056;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:72,30:0.29:102
chr19	41387669	rs10425185	A	G	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	41387907	rs116439249	G	C	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:141,113:0.44:254
chr19	41397370	rs3852870	A	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr19	41397806	rs8106551	C	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	41397868	rs35809263	C	A	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=5.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.322;SOR=1.404;set=HC	GT:AD:AF:DP	0/1:41,43:0.51:84
chr19	41397988	rs12609161	A	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-6.440;QD=2.36;ReadPosRankSum=-0.333;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:164,41:0.20:205
chr19	41399799	rs11880938	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr19	41399960	.	G	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-2.277;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr19	41400906	rs10626476	C	CAGAG	2742.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	41400913	.	AAAACAAACAAAC	A,AAAACAAAC	2250.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=68;set=Intersection	GT:AF:DP	1/2:0.47,0.53:55
chr19	41401263	rs12982060	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	41401384	rs12984358	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr19	41401924	rs11878463	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr19	41401950	rs4803398	G	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.81;QD=26.33;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	41402162	rs3956342	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	41402365	rs35870895	C	CT	2649.73	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:172,149:0.46:321
chr19	41402579	rs6508953	A	G	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	41403129	.	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.669;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=9.220;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.000;QD=1.50;ReadPosRankSum=2.247;SOR=2.551;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr19	41403325	rs7252852	T	C	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:132,137:0.51:269
chr19	41403982	rs11083583	G	GT	3766.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr19	41404196	rs10419393	A	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr19	41405962	rs4803400	T	G	4507.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:178,206:0.54:384
chr19	41414363	rs8100418	A	T	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:193,101:0.34:294
chr19	41415112	rs3844442	T	A	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	41416750	rs10419589	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	41416831	rs146260021	A	AT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	41442597	rs73038469	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr19	41447479	rs34151237	T	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-2.177;QD=6.48;ReadPosRankSum=-0.559;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr19	41447928	rs3865460	G	A	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:147,129:0.47:276
chr19	41497129	rs34223104	T	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.531;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:37,32:0.46:69
chr19	41512841	rs3745274	G	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr19	41515702	rs2279345	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	41518773	rs8192719	C	T	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:203,104:0.34:307
chr19	41522715	rs3211371	C	T	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-1.902;QD=11.26;ReadPosRankSum=-0.084;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:78,84:0.52:162
chr19	41531487	rs11670798	A	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:71,49:0.41:120
chr19	41531522	rs11670865	G	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:97,68:0.41:165
chr19	41531656	rs7249735	A	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr19	41531705	rs3745275	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr19	41531825	rs3745276	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr19	41532005	rs434606	G	A	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr19	41532133	rs62120870	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	41558800	rs11083604	T	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-2.540;QD=10.49;ReadPosRankSum=-1.461;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr19	41558878	rs56156262	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr19	41564417	rs12978001	C	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr19	41622107	rs3833221	G	GC	2416.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:108,79:0.42:187
chr19	41622189	rs305968	G	A	3735.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:166,178:0.52:344
chr19	41622615	rs12975986	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr19	41626438	rs34650210	CT	C	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-0.432;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr19	41627868	rs80319612	G	A	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr19	41628677	rs305975	T	G	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:130,158:0.55:288
chr19	41631415	rs137939255	C	A	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.221;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.95;MQRankSum=-1.365;QD=13.09;ReadPosRankSum=2.500;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr19	41631417	rs144315434	T	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.713;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.95;MQRankSum=1.432;QD=12.69;ReadPosRankSum=-1.972;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr19	41700343	rs338600	C	T	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	41700493	rs338599	G	C	7820.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.93;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	41703503	rs338595	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	41703660	rs338594	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	41704304	rs338593	T	C	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:65,68:0.51:133
chr19	41704832	rs338592	A	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	41707094	rs1628289	A	G	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.564;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:17,34:0.67:51
chr19	41711755	rs338586	G	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	41711815	rs338585	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr19	41712113	rs338584	C	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr19	41712424	rs338583	A	G	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:103,85:0.45:188
chr19	41725271	rs10411012	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr19	41727197	rs2271546	C	T	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	41727231	rs3830504	GGGTCAA	G	2727.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	41743861	rs7249222	A	G	14123.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr19	41748753	rs2304234	T	C	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:282,207:0.42:489
chr19	41759474	rs73045223	C	T	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:136,92:0.40:228
chr19	41759631	rs3835078	ACCC	A	2016.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr19	41759637	rs116056574	C	T	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr19	41798468	rs66479074	GAC	G	68.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr19	41811730	rs12745	T	C	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr19	41854480	rs60262005	TTTTA	T	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr19	41858921	rs1800470	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr19	41863777	rs11668109	A	C	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr19	41869392	rs2241714	T	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:100,73:0.42:173
chr19	41869468	rs2241713	G	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr19	41869487	rs3217387	C	CA	769.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr19	41888731	.	C	T	2894.77	.	AC=1;AF=0.500;AN=2;DP=357;set=Intersection	GT:AD:AF:DP	0/1:208,149:0.42:357
chr19	41889423	rs11880674	A	T	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=7.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=-2.370;SOR=1.635;set=HC	GT:AD:AF:DP	0/1:31,39:0.56:70
chr19	41889429	rs7259900	A	T	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.721;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.44;ReadPosRankSum=0.118;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:42,40:0.49:82
chr19	41889748	rs12602	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:81,65:0.45:146
chr19	41897674	rs878082	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr19	41897688	rs878083	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr19	41903220	rs10853751	G	A	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:143,111:0.44:254
chr19	41903671	rs892044	A	G	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.89;ReadPosRankSum=-0.116;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr19	41903675	rs892043	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.44;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	41919944	rs3213861	A	C	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:83,77:0.48:160
chr19	41920211	rs3213860	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	41928336	rs284651	T	C	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr19	41928652	rs284652	C	T	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:144,111:0.44:255
chr19	41928701	rs284653	C	T	4868.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:188,135:0.42:323
chr19	41928724	rs284654	G	A	5129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.191;QD=12.95;ReadPosRankSum=1.478;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:243,153:0.39:396
chr19	41928765	rs284655	C	T	4320.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:372,225:0.38:597
chr19	41928867	rs3217385	G	GC	6542.73	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:373,251:0.40:624
chr19	41930396	rs4674	A	G	7506.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:437,358:0.45:795
chr19	41931454	rs113478859	A	AGGCCAGGGCCGG	1595.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr19	41932084	rs284660	G	T	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:173,126:0.42:299
chr19	41932120	rs284661	C	T	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:182,116:0.39:298
chr19	41932275	rs284662	T	C	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:110,82:0.43:192
chr19	41932612	rs284663	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:116,101:0.47:217
chr19	41937095	rs17318596	G	A	5126.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:210,248:0.54:458
chr19	41939297	rs1043413	C	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,66:0.56:118
chr19	41944237	rs2231940	T	C	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:56,72:0.56:128
chr19	41945837	rs13346603	T	A	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr19	41945848	rs13344547	G	T	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:63,70:0.53:133
chr19	41945904	rs13344563	G	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:75,69:0.48:144
chr19	41949870	rs3745286	T	C	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	41950266	rs17265865	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	42027500	rs4803475	A	G	6647.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	42027514	rs4803476	T	A	6681.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	42028350	rs188463674	A	G	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:108,135:0.56:243
chr19	42083849	rs714106	C	A	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	42085873	rs2302188	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	42092815	rs3745936	T	A	7446.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	42125660	rs1041994	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr19	42126448	rs9967607	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr19	42127907	rs4803488	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	42128202	rs8111279	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr19	42132314	rs1126454	G	C	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr19	42191934	rs34742303	GC	G	2579.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:74,87:0.54:161
chr19	42212753	rs111973464	A	AGCACAGAGACTG	3013.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:58,76:0.57:134
chr19	42219968	.	A	G	542.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr19	42221607	rs7249230	A	G	9489.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	42231159	rs9621	G	A	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:137,125:0.48:262
chr19	42373298	rs1366610	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr19	42373679	rs2075750	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr19	42373893	rs2075751	C	T	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	42375244	rs2075754	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	42462788	rs1075728	G	A	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:39,66:0.63:105
chr19	42463447	rs735571	C	T	9602.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr19	42471050	rs919390	G	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	42489516	rs2217342	A	C	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	42736267	rs851609	A	G	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	42737192	rs190826917	A	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	42793590	rs3826706	G	A	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	42799049	rs1052023	C	T	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr19	43439793	rs7245978	G	A	7915.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr19	43519362	rs11083680	C	T	6265.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	43519442	rs10414166	T	C	7637.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr19	43530379	rs2526716	A	G	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	43530390	rs2736151	C	T	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	43530640	rs60941975	GT	G	2762.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	43568877	rs12977426	T	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	43690506	rs8107936	G	C	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr19	43708245	rs3170216	G	C	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:207,150:0.42:357
chr19	43708853	rs4802164	A	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.08;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	43708926	rs11673307	G	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.416;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:118,41:0.26:159
chr19	43708968	rs11669435	T	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:154,77:0.33:231
chr19	43708978	rs67183694	TC	T	954.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:157,75:0.32:232
chr19	43709072	rs56700032	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,32:0.34:95
chr19	43858044	rs45553433	A	T	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:76,96:0.56:172
chr19	43858066	rs45571738	G	A	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	43858578	rs77156507	G	A	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	43859549	rs1962260	T	C	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.22;QD=26.59;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	43860053	rs71350665	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	43860192	rs71337594	T	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.94;QD=29.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	43860251	rs199668750	G	A	262.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=37.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	43860255	rs200662237	T	G	231.84	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=46.37;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	43864548	rs10425835	C	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:61,81:0.57:142
chr19	43865499	rs71339512	T	C	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.063;MLEAC=1;MLEAF=0.500;MQ=46.63;MQRankSum=-0.638;QD=12.48;ReadPosRankSum=-0.391;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:34,49:0.59:83
chr19	43865840	rs28464741	G	T	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.292;QD=12.98;ReadPosRankSum=0.183;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr19	43866449	rs78718189	G	A	5580.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:186,239:0.56:425
chr19	43866617	rs36081957	C	T	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:79,92:0.54:171
chr19	43876891	rs7246785	G	A	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:118,174:0.60:292
chr19	43877394	rs3745996	C	T	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=54.89;MQRankSum=0.630;QD=14.81;ReadPosRankSum=0.341;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:18,36:0.67:54
chr19	43883124	rs4803622	C	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr19	43883313	rs4803623	C	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,37:0.34:110
chr19	43920443	rs3810375	C	G	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:91,51:0.36:142
chr19	43969757	rs2259013	A	G	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr19	43979589	rs1055099	G	T	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:71,69:0.49:140
chr19	43982467	rs2682543	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	43999292	.	G	GGTCTGAGGGAGGAGGAGACTCGGGGCAGGACCCCTGA	1087.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=4.992;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-3.268;QD=19.08;ReadPosRankSum=-0.978;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr19	43999634	rs1125030	A	C	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:97,103:0.52:200
chr19	44001345	rs7257767	C	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.017;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr19	44001891	rs2682549	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr19	44012005	.	G	A	96	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=28;MQ=54.61;NF=4;NR=6;PP=96;QD=13.0771212547;SC=CAGGAGTCCAGGCCCCCAGCC;SbPval=0.64;Source=Platypus;TC=39;TCF=16;TCR=23;TR=10;WE=44012013;WS=44011995;set=Platypus	GT:AD:AF:DP	1/0:29,10:0.26:39
chr19	44012880	rs2682578	A	G	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.708;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:37,40:0.52:77
chr19	44047493	.	CGTGTGT	C	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.98;ReadPosRankSum=-0.932;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	44047550	rs3547	T	C	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.983;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr19	44047826	rs2682557	T	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	44050195	rs25479	C	T	1270.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:105,66:0.39:171
chr19	44055582	rs2139720	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr19	44055726	rs25487	T	C	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=0.027;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:138,118:0.46:256
chr19	44055898	rs25486	C	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-1.441;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr19	44057227	rs915927	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr19	44079687	rs3213245	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr19	44081288	rs2682585	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	44081499	rs2682586	A	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	44081601	rs3810378	G	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr19	44082791	rs12608635	T	C	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-0.543;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:53,60:0.53:113
chr19	44082945	rs304731	T	C	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	44085827	rs11407	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,41:0.37:112
chr19	44098903	rs304726	T	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	44098963	rs304725	C	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr19	44111568	rs35296355	TAC	T	3547.73	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:71,127:0.64:198
chr19	44117582	.	T	C	1431	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=7;MMLQ=24;MQ=58.9;NF=55;NR=32;PP=1431;QD=16.8479449718;SC=GGCGAGAGATTGCAGCCGATC;SbPval=0.53;Source=Platypus;TC=213;TCF=135;TCR=78;TR=87;WE=44117590;WS=44117578;set=Platypus	GT:AD:AF:DP	1/0:126,87:0.41:213
chr19	44118188	rs3815422	A	C	4501.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:263,217:0.45:480
chr19	44118353	rs2302421	G	A	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:281,237:0.46:518
chr19	44118680	rs1860149	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	44130453	rs3746003	G	A	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:214,157:0.42:371
chr19	44130897	rs76003987	C	T	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:173,177:0.51:350
chr19	44131297	rs407049	T	C	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	44156472	rs2302524	T	C	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:65,65:0.50:130
chr19	44172025	rs2286960	C	T	5093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.518;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.614;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:214,258:0.55:472
chr19	44223125	rs346049	C	T	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:138,102:0.42:240
chr19	44223145	rs34439296	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:134,106:0.44:240
chr19	44223412	rs34471331	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:151,109:0.42:260
chr19	44224161	rs346048	T	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	44224184	rs138139029	G	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.980;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	44248878	rs346532	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	44254972	rs164070	C	T	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	44268540	.	TTATTATTATTATTAC	T	195.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=0.377;QD=12.23;ReadPosRankSum=-1.499;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	44268543	.	TTATTATTATTACTAC	T	31.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=-0.226;QD=1.98;ReadPosRankSum=2.647;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	44268654	rs12609587	T	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	44268678	rs12611034	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=41.92;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	44268730	rs145810077	TGTC	T	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	44273516	rs347519	T	C	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	44274041	rs2306799	G	A	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr19	44276370	rs3760979	A	G	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	44278779	rs649540	T	G	1477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.877;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=6.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.891;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:70,68:0.49:138
chr19	44278779	.	TAG	GAA	986	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=22;MQ=60.0;NF=25;NR=35;PP=986;QD=17.324464581;SC=CAGCTGCCGGTAGGGGGCCAA;SbPval=0.82;Source=Platypus;TC=126;TCF=62;TCR=64;TR=60;WE=44278789;WS=44278769;set=Platypus	GT:AD:AF:DP	1/0:66,60:0.48:126
chr19	44278781	rs563995	G	A	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.07;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	44280837	rs514328	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	44280869	.	A	AT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-1.136;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr19	44280980	rs35773079	T	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr19	44302624	rs349053	T	C	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:192,141:0.42:333
chr19	44303066	rs11547806	C	G	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	44306389	rs72214885	GCCCCCA	G	2517.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,66:0.49:134
chr19	44351694	rs2195980	C	T	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:161,131:0.45:292
chr19	44376681	rs1050054	G	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	44377357	rs239942	C	T	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	44377669	rs12977303	G	A	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:98,106:0.52:204
chr19	44417575	rs417699	A	G	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:106,140:0.57:246
chr19	44418077	rs407731	C	T	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:108,138:0.56:246
chr19	44418343	rs406968	C	T	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:92,129:0.58:221
chr19	44418544	rs425221	A	G	3720.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:135,163:0.55:298
chr19	44418680	rs388685	G	C	5237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.327;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=5.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.38;ReadPosRankSum=-1.995;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:113,144:0.56:257
chr19	44418693	rs388706	T	C	4960.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:113,133:0.54:246
chr19	44418775	rs61731635	C	T	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:131,133:0.50:264
chr19	44418824	rs399098	C	T	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:108,89:0.45:197
chr19	44419030	rs420242	A	G	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr19	44422982	rs423320	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr19	44423195	rs423752	G	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr19	44423981	rs384329	T	C	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,78:0.57:138
chr19	44426265	rs413093	A	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	44426467	rs57712519	T	TG	475.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr19	44469577	rs451601	T	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	44470189	rs454301	T	A	9662.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:1,357:1.00:358
chr19	44470420	rs439676	T	C	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	44470548	rs453640	A	G	10319.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr19	44470663	rs435590	G	C	14820.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr19	44471209	rs365745	T	A	5398.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	44471323	rs366111	G	A	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	44471632	rs56887248	CT	C	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.593;QD=10.94;ReadPosRankSum=0.595;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr19	44500478	rs398235	A	T	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	44500761	rs448921	G	A	13833.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr19	44501116	rs388812	A	G	12932.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr19	44501136	.	A	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.865;ClippingRankSum=0.000;DP=406;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.649;QD=0.26;ReadPosRankSum=0.505;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:355,49:0.12:404
chr19	44501227	rs388471	A	G	7616.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	44501627	rs35292176	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	44503379	rs452554	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	44503541	rs11314755	TA	T	1578.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	44503569	rs7252394	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	44503607	rs7253205	T	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	44511202	rs2356549	A	T	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	44511223	rs424147	T	G	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	44511389	rs2191566	G	T	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	44530390	rs8101750	T	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.17;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	44530444	rs3830527	GAC	G	1444.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	44535999	rs7258517	G	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	44564401	rs12610472	TG	CA	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr19	44564981	rs3826941	G	A	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;MQ=59.91;set=Intersection	GT:AD:AF:DP	0/1:182,146:0.45:328
chr19	44565125	rs4502339	A	G	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	44570393	rs6509138	C	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:132,64:0.33:196
chr19	44570551	rs4375771	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr19	44571154	rs4433920	T	C	2246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=1.082;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:118,105:0.47:223
chr19	44580440	rs201907991	CT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.947;QD=1.35;ReadPosRankSum=-0.646;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:80,30:0.27:110
chr19	44580758	rs57895932	T	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr19	44585159	rs4803674	T	A	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:102,122:0.54:224
chr19	44586076	rs4553729	T	C	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	44589999	rs139900131	TCTC	T	4557.73	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:134,121:0.47:255
chr19	44590558	rs7255701	C	T	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:144,103:0.42:247
chr19	44591360	rs8113249	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr19	44604914	rs62115526	T	C	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr19	44610665	rs2068061	A	G	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:144,98:0.40:242
chr19	44610798	rs4239529	A	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:172,126:0.42:298
chr19	44611066	rs7508149	T	C	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:247,202:0.45:449
chr19	44611420	rs4508518	A	G	4025.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:278,193:0.41:471
chr19	44612005	rs3746321	A	G	2831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.661;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.491;QD=17.59;ReadPosRankSum=2.166;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:85,76:0.47:161
chr19	44612014	rs3200505	A	T	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.455;QD=18.10;ReadPosRankSum=1.837;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:82,77:0.48:159
chr19	44612231	rs3746319	A	G	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chr19	44634903	rs10413195	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	44676148	rs2232801	G	C	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:85,111:0.57:196
chr19	44677233	rs12459795	A	G	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr19	44721699	rs9304640	C	T	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:107,141:0.57:248
chr19	44739303	rs2279073	T	C	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:63,102:0.62:165
chr19	44739399	rs2279072	T	C	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:78,97:0.55:175
chr19	44764064	rs1233444	A	G	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,79:0.56:141
chr19	44769974	rs12462723	C	T	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=1.143;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr19	44778405	rs1233428	A	C	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:83,151:0.65:234
chr19	44792701	rs2125579	T	G	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:137,122:0.47:259
chr19	44792969	rs2609908	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr19	44807359	rs67283809	GAT	G	171.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	44832684	rs2609880	T	G	4336.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:205,203:0.50:408
chr19	44832875	rs2722722	A	G	3482.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:141,158:0.53:299
chr19	44832992	rs2722723	C	G	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:107,142:0.57:249
chr19	44833506	rs4325673	C	T	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:112,152:0.58:264
chr19	44833851	rs4280359	G	C	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:60,98:0.62:158
chr19	44840789	rs2571104	T	C	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.458;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:40,56:0.58:96
chr19	44841030	.	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.328;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	44847480	rs5828194	GA	G	1998.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr19	44871287	rs8113807	T	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=44.02;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	44871287	.	TGAAGAT	CGAAGAC,CGAAGAG	544	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=14;MQ=59.78;NF=14,20;NR=16,17;PP=364,544;QD=13.9155958287;SC=ATGCTCTTCTTGAAGATAAGG;SbPval=0.45;Source=Platypus;TC=73;TCF=37;TCR=36;TR=30,37;WE=44871301;WS=44871277;set=Platypus	GT:AF:DP	0/1:0.41:73
chr19	44871293	rs2571074	T	C,G	3427.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.75;QD=40.81;SOR=0.843;set=HC	GT:AD:AF:DP	1/2:0,33,51:0.39,0.61:84
chr19	44890666	.	G	C	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=1.055;QD=3.60;ReadPosRankSum=-0.872;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:133,46:0.26:179
chr19	44890697	rs1836280	A	G	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:118,99:0.46:217
chr19	44890801	rs12610859	T	C	9659.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	44890817	rs73039937	G	A	3316.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:117,148:0.56:265
chr19	44891784	rs2571089	T	C	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:118,101:0.46:219
chr19	44892168	rs73039940	C	T	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:194,148:0.43:342
chr19	44892206	rs73557001	C	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.168;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-16.777;QD=0.26;ReadPosRankSum=-0.183;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:351,55:0.14:406
chr19	44892225	rs114985922	T	G	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-17.401;QD=1.98;ReadPosRankSum=-2.061;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:354,46:0.12:400
chr19	44892228	rs117953191	G	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.461;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-17.228;QD=2.01;ReadPosRankSum=-2.632;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:353,44:0.11:397
chr19	44892333	rs2571090	A	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr19	44896487	rs2571123	G	C	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr19	44896857	rs2571122	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	44901526	rs2722650	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr19	44901557	rs2722651	A	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	44933504	rs59505617	G	A	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:172,125:0.42:297
chr19	44933706	rs57014690	C	T	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:190,183:0.49:373
chr19	44934489	rs2571174	G	A	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	44934653	rs8113370	T	C	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:77,62:0.45:139
chr19	44947184	rs204547	T	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr19	44947197	rs204546	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr19	44981800	rs73036497	T	C	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,64:0.53:121
chr19	44981832	rs73036500	T	C	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,63:0.53:119
chr19	44983375	rs73038404	G	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.53;ReadPosRankSum=-1.242;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	44983567	rs2253563	C	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr19	44983728	rs35167767	TG	T	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr19	44988716	rs3745148	G	A	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=1.468;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:44,53:0.55:97
chr19	45004042	rs12459496	T	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr19	45004305	rs12977470	G	C	4969.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:205,232:0.53:437
chr19	45010116	rs1434577	G	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr19	45015020	rs17800789	T	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr19	45015596	rs1004605	T	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr19	45016116	rs8100718	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	45016990	rs5828200	CT	C	4053.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	45017477	rs10706694	TA	T	2941.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	45017496	rs1235376	G	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-1.059;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr19	45024875	rs12975863	T	C	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr19	45024879	rs57244256	CGT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.348;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.599;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr19	45033379	.	G	GCA	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.073;QD=6.67;ReadPosRankSum=0.424;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:57,33:0.37:90
chr19	45116776	rs846898	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr19	45116933	rs846897	G	A	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:157,181:0.54:338
chr19	45126900	rs846856	T	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	45126994	rs846857	A	G	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:102,153:0.60:255
chr19	45147340	rs11540084	G	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr19	45147396	rs11540085	C	T	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=8.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-1.013;SOR=1.538;set=HC	GT:AD:AF:DP	0/1:48,41:0.46:89
chr19	45147518	rs5828211	C	CA	7006.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	45147542	rs439446	T	C	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	45147576	rs5828212	CG	C	3544.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	45157113	rs71171278	A	AG	16696.73	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr19	45162038	rs203710	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:51,55:0.52:106
chr19	45162189	rs35385129	C	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	45182381	rs145179850	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.247;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	45206532	rs2965167	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr19	45211407	rs61744497	C	T	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:108,82:0.43:190
chr19	45251156	rs2965169	A	C	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	45324138	rs28399637	G	A	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:78,76:0.49:154
chr19	45389224	rs283814	A	G	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.28;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	45394969	rs184017	T	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	45395619	rs2075650	A	G	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=1.639;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:29,38:0.57:67
chr19	45395714	rs157581	T	C	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.38;ReadPosRankSum=0.157;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	45396144	rs11556505	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr19	45396219	rs157582	C	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:148,110:0.43:258
chr19	45404431	rs741780	T	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,42:0.45:93
chr19	45404691	rs405697	A	G	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.662;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr19	45409167	rs440446	C	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-1.669;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr19	45430280	rs5112	C	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.84;QD=27.30;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	45430417	rs11878790	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	45448036	rs1132899	T	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	45448465	rs5167	T	G	13374.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr19	45451620	rs5120	T	A	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	45452335	rs4803776	T	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr19	45458146	rs3760629	A	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	45458593	rs2238682	C	T	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.32;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	45458925	rs7252480	C	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	45465363	rs35566032	GA	G	3016.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	45476422	rs204481	T	C	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	45477910	rs11318909	CT	C	2220.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	45488434	rs204472	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	45488567	rs204471	T	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	45489548	rs58800134	A	AG	1510.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	45490570	rs3786505	A	G	10808.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr19	45494247	rs11405080	A	AC	7023.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr19	45494349	rs11333249	TC	T	2376.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	45495668	rs2075618	G	C	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	45495682	rs2075619	A	G	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	45496303	rs9193	T	C	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	45506732	rs145291152	CAAA	C	736.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.632;QD=32.03;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr19	45506772	rs7251460	T	A	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=26.68;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	45528799	rs2288918	T	C	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:76,115:0.60:191
chr19	45532009	rs12609547	G	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr19	45535672	rs147163954	CA	C	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-1.441;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr19	45536036	rs10424046	C	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr19	45537417	rs143167603	AAAAT	A	324.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	45540541	.	G	GA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=5.123;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.355;QD=2.38;ReadPosRankSum=-1.664;SOR=0.101;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr19	45561063	rs4803794	A	G	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	45571781	rs10445571	T	C	1868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-2.819;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:127,93:0.42:220
chr19	45571900	rs34337168	G	GCC	747.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr19	45571903	rs36097205	G	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr19	45593289	rs76007960	G	T	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=9.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-0.147;SOR=1.335;set=HC	GT:AD:AF:DP	0/1:67,96:0.59:163
chr19	45596635	rs75282681	A	G	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:93,121:0.57:214
chr19	45596886	rs75350052	C	T	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr19	45643890	rs2041262	T	C	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	45645553	rs112401916	G	A	5031.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:208,241:0.54:449
chr19	45649503	rs112250728	T	TGTAA	2141.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr19	45655333	rs28469095	T	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr19	45655647	rs117934605	G	T	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:84,96:0.53:180
chr19	45667694	rs79323322	G	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	45668292	rs77838861	C	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,70:0.48:146
chr19	45668327	rs10410833	C	T	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,58:0.53:109
chr19	45681560	rs7254936	T	C	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:2,255:0.99:257
chr19	45716678	rs346740	G	C	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	45781081	.	TTGTGTGTGTG	T,TTGTGTGTG	663.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.88;QD=33.19;SOR=3.056;set=HC	GT:AD:AF:DP	1/2:0,13,7:0.65,0.35:20
chr19	45781916	rs141826060	C	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr19	45801018	rs173179	T	C	7347.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	45801579	rs139000043	GGGTCTGTGCGT	G	1137.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr19	45803008	rs73570398	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr19	45810035	rs4884	A	G	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:259,170:0.40:429
chr19	45814947	rs17875617	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr19	45815033	rs17875616	G	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr19	45815248	rs10402747	T	C	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr19	45849690	rs12979984	G	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr19	45849751	rs9749477	C	T	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr19	45849909	rs9749618	A	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr19	45850598	rs11418793	C	CA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=1.465;QD=2.04;ReadPosRankSum=-0.696;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	45852950	.	A	AGGGTG	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.732;QD=5.53;ReadPosRankSum=-2.515;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	45852957	.	G	GGT	34	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=8;HapScore=2;MGOF=24;MMLQ=22;MQ=60.54;NF=0;NR=3;PP=34;QD=16.0;SC=GTGAGGGTGGGGGGGGGCCCC;SbPval=1.0;Source=Platypus;TC=15;TCF=2;TCR=13;TR=3;WE=45852965;WS=45852947;set=Platypus	GT:AD:AF:DP	0/1:12,3:0.20:15
chr19	45853689	rs373031387	G	A	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:148,106:0.42:254
chr19	45854503	rs143201119	CCCTCA	C	3224.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:117,89:0.43:206
chr19	45854919	rs13181	T	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:126,77:0.38:203
chr19	45855060	rs1799790	C	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr19	45855524	rs1052555	G	A	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,71:0.51:139
chr19	45856144	rs1799787	G	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=0.535;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:38,29:0.43:67
chr19	45856468	rs238417	G	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:75,42:0.36:117
chr19	45859072	rs35665496	CT	C	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.586;QD=5.62;ReadPosRankSum=0.801;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:26,40:0.61:66
chr19	45865002	rs171140	C	A	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:288,201:0.41:489
chr19	45865217	rs238403	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr19	45867259	rs1799793	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr19	45868006	rs238405	A	T	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr19	45868038	rs1799786	G	A	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr19	45868309	rs238406	T	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:94,75:0.44:169
chr19	45868478	rs238407	T	A	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:45,62:0.58:107
chr19	45872036	rs1799783	C	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr19	45873942	rs3810366	G	C	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr19	45911319	rs11314106	CA	C	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=0.703;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr19	45912489	rs35729377	CAAG	C	3464.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:119,93:0.44:212
chr19	45912736	rs3212986	C	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr19	45923496	rs3212955	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr19	45923653	rs11615	A	G	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:179,105:0.37:284
chr19	45924362	rs3212948	G	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	46025388	rs2301284	G	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr19	46027752	rs4802260	C	T	2344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.485;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.908;QD=11.38;ReadPosRankSum=-0.007;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:92,114:0.55:206
chr19	46032841	rs12971437	G	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr19	46113145	rs368671855	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.050;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	46118127	rs3816046	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr19	46119867	rs2241722	C	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr19	46121020	rs12985660	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr19	46125008	rs34741603	C	CT	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.608;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.448;QD=2.66;ReadPosRankSum=0.292;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr19	46127918	rs28365786	A	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr19	46130191	rs1548026	T	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr19	46130218	rs35982580	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=0.998;QD=5.06;ReadPosRankSum=-0.078;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	46133251	rs7251952	C	T	4053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=0.405;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:138,108:0.44:246
chr19	46133256	rs7252175	G	A	4102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=-0.958;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:136,111:0.45:247
chr19	46141845	rs12151009	T	C	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:81,108:0.57:189
chr19	46145025	rs2286756	G	T	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:71,94:0.57:165
chr19	46145661	rs35384424	C	T	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:97,83:0.46:180
chr19	46148386	rs11670462	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	46177863	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=3.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.126;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr19	46180150	rs4803846	A	G	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	46180184	rs11672660	C	T	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-0.876;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:152,78:0.34:230
chr19	46180414	rs34783010	G	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr19	46180870	rs190667833	G	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr19	46181392	rs1800437	G	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr19	46185217	rs12709891	C	A	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.214;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:70,81:0.54:151
chr19	46196634	rs2302593	C	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr19	46199106	rs34362798	CT	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.31;ReadPosRankSum=1.960;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	46202172	rs2287019	C	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr19	46204878	rs11083779	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr19	46204938	rs4803847	C	T	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	46205050	rs4803848	T	C	10952.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	46206098	rs62111730	G	A	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:84,116:0.58:200
chr19	46206262	rs17850756	G	A	8174.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:320,394:0.55:714
chr19	46214701	rs35255751	A	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=1.262;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr19	46238555	rs2041975	T	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr19	46248407	rs10404220	G	A	1255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=0.343;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:78,63:0.45:141
chr19	46258024	rs918164	A	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr19	46259205	.	G	T	582.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr19	46260375	rs4802275	C	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr19	46262879	rs150269921	T	C	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.183;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:115,84:0.42:199
chr19	46265029	rs8112282	C	T	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:121,124:0.51:245
chr19	46265047	rs139434566	A	ATCCAGC	1748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=8.578;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.063;QD=18.22;ReadPosRankSum=0.220;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:50,46:0.48:96
chr19	46269076	rs2014576	G	A	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,69:0.49:140
chr19	46269313	rs2014377	G	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr19	46274171	rs635299	A	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-1.746;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	46274392	rs2854300	G	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=-1.017;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr19	46274972	rs915915	A	C	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:173,136:0.44:309
chr19	46275976	rs527221	G	C	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:111,73:0.40:184
chr19	46276056	rs16939	C	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr19	46281745	rs1799894	A	G	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:87,73:0.46:160
chr19	46282503	rs572634	A	C	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:100,98:0.49:198
chr19	46282745	.	C	G	2324.77	.	AC=1;AF=0.500;AN=2;DP=241;set=Intersection	GT:AD:AF:DP	0/1:128,110:0.46:238
chr19	46287200	rs617988	C	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr19	46288706	rs3760843	A	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	46289392	rs8110017	G	C	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:91,61:0.40:152
chr19	46303628	rs28637549	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:75,49:0.40:124
chr19	46305530	rs35653379	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr19	46313825	rs10407137	A	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:138,82:0.37:220
chr19	46318963	rs3810331	C	A	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	46326200	rs12976060	A	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr19	46327053	rs7251942	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:105,61:0.37:166
chr19	46327185	rs7252416	G	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr19	46327209	rs11284049	CT	C	237.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr19	46329438	rs7246155	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr19	46331302	rs4239535	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr19	46332142	rs3826893	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	46332194	rs3745929	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr19	46333632	rs4516331	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	46334955	rs4803866	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr19	46341824	rs17850110	C	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:97,126:0.57:223
chr19	46341992	rs12327784	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr19	46345376	.	G	A	404.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr19	46345782	rs145931067	A	AC	440.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	46350960	rs3745928	A	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr19	46352122	rs2303014	A	G	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr19	46352203	rs2303013	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr19	46357313	rs11670136	T	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	46357811	rs2287718	C	A	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,63:0.47:134
chr19	46367703	rs11667582	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-0.840;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr19	46367901	rs1363538	T	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	46367945	rs3810329	G	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	46375779	rs16980091	C	T	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:104,93:0.47:197
chr19	46387503	rs3745926	T	C	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:114,155:0.58:269
chr19	46388379	rs3826892	C	G	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:167,163:0.49:330
chr19	46404579	rs10423899	A	G	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=7.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.580;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:61,77:0.56:138
chr19	46506781	rs10412427	T	C	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=13.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.47;ReadPosRankSum=0.823;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:9,27:0.75:36
chr19	46506786	rs71337252	TG	T	953.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=12.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.25;ReadPosRankSum=1.591;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr19	46506809	rs10416563	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr19	46511260	rs7256620	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	46511346	rs2287304	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr19	46511548	rs2287305	T	C	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	46511615	rs7257273	C	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	46511617	rs9676886	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	46518651	rs7895	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr19	46518682	rs7271	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr19	46520026	rs2287306	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:142,56:0.28:198
chr19	46520728	rs11669048	G	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	46521526	rs2302788	A	G	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:226,155:0.41:381
chr19	46543249	rs756401	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr19	46543566	rs17271272	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr19	46627592	rs2287307	G	A	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:114,89:0.44:203
chr19	46640551	rs1990765	C	A	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:207,172:0.45:379
chr19	46652396	rs138711585	TCTCTCTCTCTCC	T	404.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	46664168	rs2270403	G	A	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:116,84:0.42:200
chr19	46664400	rs10408162	A	G	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,64:0.52:124
chr19	46664575	.	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.12;ReadPosRankSum=-1.181;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	46733912	rs2286802	A	G	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=0.010;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr19	46733916	rs2286803	G	A	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=0.169;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr19	46734255	rs2286804	A	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr19	46800228	.	T	C	28	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=3;HapScore=2;MGOF=21;MMLQ=24;MQ=60.0;NF=4;NR=0;PP=28;QD=15.6928031368;SC=AGGCCTGGCGTGGCACAGCCA;SbPval=1.0;Source=Platypus;TC=13;TCF=10;TCR=3;TR=4;WE=46800236;WS=46800218;set=Platypus	GT:AD:AF:DP	1/0:9,4:0.31:13
chr19	46811984	rs2311054	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	46812126	rs757638	A	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	46814003	rs79263603	C	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr19	46815297	rs8101216	T	C	9765.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr19	46815310	rs12461322	G	A	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:198,171:0.46:369
chr19	46815499	rs8101480	T	C	15977.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr19	46815703	rs66668057	ATATT	A	6470.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=-2.322;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:203,171:0.46:374
chr19	46815705	rs3752207	A	C	4269.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:171,202:0.54:373
chr19	46815707	.	TTCTC	T	2966	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=23;MQ=59.91;NF=22;NR=86;PP=2966;QD=20;SC=CCCCAGATATTTCTCTCCCCA;SbPval=0.22;Source=Platypus;TC=266;TCF=43;TCR=223;TR=108;WE=46815719;WS=46815693;set=Platypus	GT:AD:AF:DP	1/0:158,108:0.41:266
chr19	46815711	rs116478928	C	T	6509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=-1.399;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:209,174:0.45:383
chr19	46815969	rs146459631	G	GGTGTGTGT	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.956;QD=23.98;ReadPosRankSum=0.932;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	46823702	rs3764609	A	G	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:163,137:0.46:300
chr19	46823751	rs3764610	C	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:154,117:0.43:271
chr19	46834683	rs11665853	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	46856963	rs917947	G	A	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:118,117:0.50:235
chr19	46857015	rs917948	C	T	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:175,174:0.50:349
chr19	46857286	rs2075144	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr19	46887007	rs1024781	G	C	7472.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	46890247	rs58701793	G	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr19	46892111	rs759290	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr19	46892168	rs8106745	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	46893238	rs759291	A	C	8055.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=3.617;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.94;ReadPosRankSum=1.864;SOR=0.673;set=HC	GT:AD:AF:DP	1/1:1,298:1.00:299
chr19	46893465	rs2311213	A	G	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	46914921	rs34186470	G	A	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:164,142:0.46:306
chr19	46972967	rs2288916	G	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	46973631	.	G	A	2985.77	.	AC=1;AF=0.500;AN=2;DP=254;set=Intersection	GT:AD:AF:DP	0/1:115,138:0.55:253
chr19	46974307	rs3826852	C	T	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	47030234	rs62136886	T	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.866;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.831;MLEAC=1;MLEAF=0.500;MQ=54.02;MQRankSum=-6.241;QD=3.39;ReadPosRankSum=0.270;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr19	47030432	rs3745795	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	47104310	rs17551870	TGG	T	2401.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:39,62:0.61:101
chr19	47105585	rs35630463	A	AT	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.260;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:55,32:0.37:87
chr19	47109011	rs3729510	T	C	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	47111663	rs3729760	T	C	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:148,92:0.38:240
chr19	47112648	rs10113	T	C	3673.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:242,190:0.44:432
chr19	47112740	rs710889	C	T	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:70,49:0.41:119
chr19	47124714	rs2229129	T	G	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:86,102:0.54:188
chr19	47126614	rs12459883	C	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr19	47127324	rs2229128	C	G	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:37,93:0.72:130
chr19	47137162	rs1005774	C	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr19	47137481	rs3833245	GAT	G	1409.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr19	47138014	rs3745623	C	G	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=2.874;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:23,33:0.59:56
chr19	47153145	rs375074031	CA	C	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=3.021;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr19	47177913	rs314665	A	G	14392.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:2,546:1.00:548
chr19	47185096	.	C	CT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=1.070;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	47193850	rs314671	T	C	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	47200618	rs10413222	C	T	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	47207654	rs11083846	G	A	10104.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	47212593	rs10423365	A	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	47217113	rs12461666	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	47228985	rs313844	G	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	47241599	rs56374620	C	T	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	47249707	rs1693994	T	C	63.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	47258674	rs3201779	C	T	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	47278859	rs3027961	C	G	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	47280789	rs313835	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	47282240	rs3745609	A	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:70,93:0.57:163
chr19	47287169	rs313852	G	A	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr19	47287186	rs139412466	AGAG	A	1036.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr19	47287405	rs3027958	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr19	47287939	rs313853	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr19	47524457	rs188113431	G	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=1.344;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	47535795	rs2287841	T	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr19	47542425	rs71353947	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr19	47543774	rs3745615	G	A	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:3,135:0.98:138
chr19	47548327	rs10423289	A	C,T	1105.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.36;QD=26.97;SOR=3.003;set=HC	GT:AD:AF:DP	1/2:0,13,28:0.32,0.68:41
chr19	47548678	rs889169	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr19	47549155	rs889170	AT	GC	3621.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;JOINED;set=Intersection	GT:AD:AF:DP	0/1:74,93:0.56:167
chr19	47549791	rs1862499	A	G	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=0.182;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:39,74:0.65:113
chr19	47549962	rs73566538	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:39,63:0.62:102
chr19	47584699	rs3745619	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	47585517	rs7250850	G	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:113,124:0.52:237
chr19	47585698	rs7251104	G	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr19	47587772	rs2303107	G	A	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:57,90:0.61:147
chr19	47588202	rs7248181	G	T	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr19	47597102	rs10408163	T	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr19	47634313	rs177918	T	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	47658320	rs11666272	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-0.435;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	47658482	rs11670191	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr19	47761543	rs2302985	T	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	47761646	rs12985905	G	C	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	47763573	rs45591932	C	T	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	47768128	rs2032811	G	C	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	47769839	rs9304666	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	47770015	rs10413121	A	C	6313.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	47770032	rs60383222	C	T	3325.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:117,156:0.57:273
chr19	47773786	rs888838	A	G	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	47773973	rs888837	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	47774329	rs73570553	T	C	7031.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	47774447	rs66726054	G	A	11625.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr19	47774572	rs60930438	C	T	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	47774772	rs888836	T	C	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	47774985	.	TGTGTGCGCGCGCGCGC	T	160	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=2;MGOF=17;MMLQ=23;MQ=60.54;NF=2;NR=12;PP=160;QD=11.6428571429;SC=TGTGTGTGTGTGTGTGCGCGC;SbPval=0.56;Source=Platypus;TC=15;TCF=2;TCR=13;TR=14;WE=47775008;WS=47774975;set=Platypus	GT:AD:AF:DP	1/0:1,14:0.93:15
chr19	47774987	.	TGTGCGCGCGCGCGC	T	212	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=2;MGOF=24;MMLQ=23;MQ=60.54;NF=2;NR=12;PP=212;QD=15.3571428571;SC=TGTGTGTGTGTGTGCGCGCGC;SbPval=0.56;Source=Platypus;TC=15;TCF=2;TCR=13;TR=14;WE=47775008;WS=47774975;set=Platypus	GT:AD:AF:DP	1/1:1,14:0.93:15
chr19	47778054	rs34227852	G	GC	560.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	47778101	rs35912982	T	TC	1018.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	47778221	rs10407367	A	C	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	47778412	rs1055218	G	T	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	47823038	rs4467185	G	A	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	47823484	rs4804049	T	C	7195.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	47823871	rs11880097	G	T	9592.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	47844464	.	T	C	2569.77	.	AC=1;AF=0.500;AN=2;DP=257;set=Intersection	GT:AD:AF:DP	0/1:137,120:0.47:257
chr19	47879093	rs8105743	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr19	47879613	rs2253022	A	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr19	47884089	rs142828801	G	A	4189.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:149,197:0.57:346
chr19	47885180	rs889167	A	G	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	47885234	rs113840347	T	C	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:183,139:0.43:322
chr19	47913119	.	C	CA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.173;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	47922426	rs62130535	G	A	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	47933190	rs142312177	A	AG	1198.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	47933728	rs8104926	A	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	47933810	rs41275768	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	47935352	rs4801722	T	C	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	47935572	rs7259674	G	A	4053.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:143,187:0.57:330
chr19	47944710	rs2254560	T	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr19	47969394	rs12459087	G	A	5009.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:226,233:0.51:459
chr19	47980153	rs2293424	G	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr19	48182522	rs56106931	A	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr19	48182568	rs2911005	C	T	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	48182787	rs4802382	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr19	48182946	rs2911006	T	C	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	48183114	rs2914438	A	G	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	48183771	rs1035938	C	T	10054.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:455,476:0.51:931
chr19	48184474	rs3745762	C	T	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:141,138:0.49:279
chr19	48184547	rs889337	G	A	2393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.025;QD=10.45;ReadPosRankSum=-0.065;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:112,117:0.51:229
chr19	48184642	rs58014830	TG	T	1571.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	48185147	rs2303755	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.546;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.346;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	48197218	rs2914428	A	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr19	48198557	rs2241614	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr19	48198675	rs13346368	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:59,21:0.26:80
chr19	48198796	rs2241613	C	G	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr19	48198817	rs2241612	T	A	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	48198833	rs2241611	G	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr19	48202125	rs7248050	C	G	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	48205288	rs8100472	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr19	48205725	rs3745760	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	48239557	rs11669035	T	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr19	48244045	rs34197064	C	CT	540.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	48244194	rs7255434	A	G	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:75,90:0.55:165
chr19	48244569	rs3745758	G	A	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:176,178:0.50:354
chr19	48244692	rs3833256	C	CG	989.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr19	48249117	.	CGTCGGGG	C	84	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=19;MQ=60.0;NF=2;NR=0;PP=84;QD=47.5;SC=TGCGTGGACTCGTCGGGGGTC;SbPval=1.0;Source=Platypus;TC=4;TCF=2;TCR=2;TR=2;WE=48249131;WS=48249107;set=Platypus	GT:AD:AF:DP	0/1:2,2:0.50:4
chr19	48250320	rs2334293	G	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr19	48250414	rs3745756	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	48253579	rs3745754	A	G	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-0.803;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:195,126:0.39:321
chr19	48253667	rs3786780	C	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr19	48254392	rs10402957	T	C	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.039;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:45,60:0.57:105
chr19	48255804	rs1042558	A	G	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=3.152;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:117,88:0.43:205
chr19	48258551	rs10406879	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:65,33:0.34:98
chr19	48258578	rs10405135	A	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:74,36:0.33:110
chr19	48258717	rs1804994	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	48258772	rs11083895	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	48258826	rs10411523	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	48260079	rs889142	T	C	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr19	48282077	rs111841672	C	CGCAGCGG	1110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.019;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.96;MQRankSum=4.315;QD=15.22;ReadPosRankSum=-0.580;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr19	48282172	rs1862485	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr19	48284025	rs34362700	C	CG	1143.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr19	48305357	rs77144450	G	A	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:93,99:0.52:192
chr19	48305651	rs62130758	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:78,58:0.43:136
chr19	48305674	rs78381908	T	C	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.762;QD=11.53;ReadPosRankSum=0.635;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:97,56:0.37:153
chr19	48363390	rs200234544	C	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=45.45;MQRankSum=-2.195;QD=13.13;ReadPosRankSum=1.748;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	48377798	rs373194922	G	GA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.425;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	48382226	rs11083904	G	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr19	48389425	rs11083907	A	G	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	48479839	.	G	GAA	706.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.57;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	48479854	rs10404937	C	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.89;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	48495128	rs11671612	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	48512121	rs7249129	G	A	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	48522894	rs2115100	C	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	48523197	rs2303691	C	A	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	48525507	rs2303690	G	A	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	48533727	rs1171097	G	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr19	48533847	rs199946129	GA	G	1607.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:88,103:0.54:191
chr19	48537777	rs35163057	GT	G	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=11.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=0.697;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	48542414	rs891015	C	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr19	48543774	rs8102084	C	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr19	48543862	rs8105198	G	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr19	48544753	rs3745745	G	A	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=2.229;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:30,31:0.51:61
chr19	48551546	rs9226	A	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	48558003	rs744399	A	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.15;ReadPosRankSum=0.256;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	48558342	rs3217328	TCTCCAGAAGACCC	T	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	48565468	rs4802425	G	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:99,71:0.42:170
chr19	48571026	rs2307278	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr19	48571181	rs11564618	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr19	48581142	rs1019786	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	48581253	rs1019785	C	G	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	48598823	rs156631	A	G	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr19	48598916	rs156632	A	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	48598948	rs3745738	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr19	48601350	rs251685	T	C	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	48601454	rs251684	T	C	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	48601528	rs251683	G	T	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	48601593	rs11432234	A	AT	585.74	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,30:0.91:33
chr19	48602948	rs2303744	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr19	48608548	rs11564523	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr19	48609601	rs11564519	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr19	48613544	rs251696	C	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	48613602	rs138934663	CA	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-1.189;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	48613612	rs146764560	T	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.52;ReadPosRankSum=0.765;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	48613624	rs199676177	TA	T	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.70;ReadPosRankSum=0.437;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	48613788	rs138501838	T	TGCTCCGGAATCCGGTGCGGAGGCTTGG	348.74	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	48621016	.	CG	GA	2192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.605;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=0.972;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:99,60:0.38:159
chr19	48621036	rs13436	C	G	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.936;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:91,55:0.38:146
chr19	48622375	rs3729512	C	T	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr19	48622427	rs20581	A	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	48622483	rs156647	A	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=1.805;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:58,67:0.54:125
chr19	48622545	rs274883	A	G	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=2.348;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:76,62:0.45:138
chr19	48624625	rs153023	C	T	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:100,96:0.49:196
chr19	48630700	rs61230848	GCC	G	2628.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	48631408	rs156641	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	48634298	rs3730994	C	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr19	48634319	rs392891	T	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:58,38:0.40:96
chr19	48636534	rs2288883	T	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	48639235	rs2288882	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	48639472	rs3730976	T	C	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=0.898;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:110,93:0.46:203
chr19	48646732	rs3730938	A	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	48646883	rs2288878	T	C	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	48646993	rs415465	C	T	6519.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	48647241	rs3730931	T	C	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr19	48654553	rs20580	G	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	48657077	.	T	TCACACACACACA	2480	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=25;MQ=52.77;NF=6;NR=4;PP=2480;QD=248.3;SC=CCTCTTGGCTTCACACACACA;SbPval=0.6;Source=Platypus;TC=15;TCF=9;TCR=6;TR=10;WE=48657085;WS=48657067;set=Platypus	GT:AD:AF:DP	1/1:5,10:0.67:15
chr19	48660238	.	C	T	194	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=2;MGOF=7;MMLQ=18;MQ=58.31;NF=8;NR=5;PP=194;QD=17.5977855806;SC=GAAAGGCAGGCGACTGAAGGG;SbPval=0.63;Source=Platypus;TC=20;TCF=12;TCR=8;TR=13;WE=48660258;WS=48660228;set=Platypus	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	48660243	.	GAAGGGGCA	G	1282	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=2;MGOF=7;MMLQ=22;MQ=58.98;NF=7;NR=8;PP=1282;QD=89.3184407622;SC=GCAGGCGACTGAAGGGGCAGG;SbPval=0.52;Source=Platypus;TC=16;TCF=7;TCR=9;TR=15;WE=48660258;WS=48660228;set=Platypus	GT:AD:AF:DP	1/1:1,15:0.94:16
chr19	48660445	rs274862	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	48664798	rs3730862	G	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:78,68:0.47:146
chr19	48665690	rs76360332	CT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=0.469;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	48668709	rs3730850	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	48668795	rs3730849	G	A	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr19	48668830	rs20579	G	A	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,94:0.56:169
chr19	48668966	rs143468290	G	GA,GAA	2182.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.38;MQRankSum=0.310;QD=22.98;ReadPosRankSum=1.672;SOR=0.656;set=HC	GT:AD:AF:DP	1/2:3,39,53:0.41,0.56:95
chr19	48673304	rs73574169	T	G	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:134,168:0.56:302
chr19	48673458	rs3730840	G	A	7937.77	.	AC=1;AF=0.500;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	0/1:476,393:0.45:869
chr19	48685877	rs16981771	G	A	6162.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:228,306:0.57:534
chr19	48686072	rs2007182	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr19	48686098	rs2007183	G	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr19	48689859	rs56345112	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr19	48693928	rs57930203	C	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	48695381	rs409135	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr19	48697808	.	TGG	T	24	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=5;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=24;QD=28.5;SC=AATGAATGGGTGGTCCCATTT;SbPval=1.0;Source=Platypus;TC=10;TCF=8;TCR=2;TR=2;WE=48697817;WS=48697807;set=Platypus	GT:AD:AF:DP	0/1:8,2:0.20:10
chr19	48697961	rs12973411	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr19	48707581	rs1965759	G	A	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	48707581	.	GTG	ATA	766	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=20;MQ=60.0;NF=20;NR=25;PP=766;QD=18.2103972192;SC=GATGGAGGGTGTGCCGGAGGA;SbPval=0.46;Source=Platypus;TC=47;TCF=20;TCR=27;TR=45;WE=48707591;WS=48707571;set=Platypus	GT:AD:AF:DP	1/1:2,45:0.96:47
chr19	48707583	rs1965758	G	A	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	48709635	rs8110489	G	A	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr19	48715153	rs3745718	T	C	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	48715269	rs2008521	T	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	48722180	rs10500299	C	T	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:127,99:0.44:226
chr19	48735287	rs4802448	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr19	48736706	rs4802449	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr19	48737551	rs2288877	T	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr19	48737764	rs2288876	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:102,76:0.43:178
chr19	48744025	rs34345721	CA	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.925;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr19	48744164	rs11670259	C	T	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:152,123:0.45:275
chr19	48800338	rs7252988	A	G	7371.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	48800914	rs35461177	G	A	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	48806094	rs35361179	C	T	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:160,121:0.43:281
chr19	48807401	rs56177753	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	48823545	rs8107712	G	A	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	48830286	rs10415654	T	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.252;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	48832554	rs8102349	A	G	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	48836673	rs3826828	G	T	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	48845777	rs4275952	G	A	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	48848702	rs17361438	C	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	48863386	rs438767	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	48876829	rs34282921	T	C	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:211,198:0.48:409
chr19	48893820	.	CAG	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=3.354;QD=1.14;ReadPosRankSum=-1.427;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr19	48945880	rs62130268	T	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	48946325	rs111420822	T	C	141.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	48949286	rs1643487	G	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	48949766	rs929743	C	G	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	48954571	rs1799274	A	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	48977019	rs1799258	C	T	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	49090368	rs34482710	T	TA	1091.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:4,51:0.93:55
chr19	49096065	rs2302948	C	T	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:104,159:0.60:263
chr19	49102399	rs1132054	C	T	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr19	49102782	rs10410524	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr19	49104308	rs1236093	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr19	49106995	rs3745728	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=1.468;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:27,34:0.56:61
chr19	49113029	rs2617803	G	C	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr19	49114236	rs454715	T	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	49116076	rs2617801	C	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	49116134	rs2617800	T	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	49116359	rs447802	T	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:87,116:0.57:203
chr19	49116438	rs376524	A	G	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:125,130:0.51:255
chr19	49116555	rs368654	A	G	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	49119900	rs138568775	C	CCAGCACAGCA	3302.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:143,140:0.49:283
chr19	49120434	rs369880	C	T	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:200,186:0.48:386
chr19	49122248	rs3094287	T	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr19	49131764	rs34630951	A	AAG	3628.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:70,100:0.59:170
chr19	49132634	rs3745733	G	A	4858.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:139,209:0.60:348
chr19	49141406	rs137896889	AAGAC	A	294.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	49141532	rs3848543	T	C	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	49143025	rs2303147	T	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-1.750;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:36,28:0.44:64
chr19	49148781	rs10426317	C	T	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.595;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:196,138:0.41:334
chr19	49164952	rs281392	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:66,43:0.39:109
chr19	49166875	rs371690	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr19	49168182	rs373002	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	49183284	rs3826838	G	A	5083.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:184,246:0.57:430
chr19	49183705	rs3826846	G	A	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:131,98:0.43:229
chr19	49206108	rs679574	C	G	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	49206145	rs516316	G	C	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	49206172	rs516246	C	T	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	49206417	rs492602	A	G	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;MQ=59.76;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	49206462	rs681343	C	T	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	49206674	rs601338	G	A	5090.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	49206985	rs602662	G	A	9488.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	49207206	rs485186	A	G	9057.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	49207255	rs485073	A	G	7402.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.816;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	49207255	.	ATT	GTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=3;HapScore=1;MGOF=17;MMLQ=24;MQ=60.0;NF=47;NR=103;PP=2947;QD=20;SC=ATGCTGGCCCATTCTTTGAGA;SbPval=0.5;Source=Platypus;TC=159;TCF=49;TCR=110;TR=150;WE=49207265;WS=49207245;set=Platypus	GT:AD:AF:DP	1/1:9,150:0.94:159
chr19	49207257	rs603985	T	C	7402.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	49216607	rs73057542	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr19	49216926	rs281384	A	G	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	49217261	rs281385	A	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	49217520	rs281387	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	49217605	rs281388	T	G	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	49218060	rs35866622	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	49218111	rs33988101	G	T	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	49218430	rs12978750	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	49218437	rs12978752	A	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.77;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	49218602	rs12979278	C	T	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	49228272	rs2287921	T	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	49232226	rs2287922	G	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	49232956	.	CCTT	C	393.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.61;ReadPosRankSum=-1.528;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr19	49244219	rs2307018	CG	AA	1786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=0.183;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:72,50:0.41:122
chr19	49246866	rs838147	A	G	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr19	49247601	rs11672046	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr19	49247693	rs8108136	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr19	49247786	rs8108468	G	A	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=0.989;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:32,47:0.59:79
chr19	49247900	rs8111288	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr19	49248640	rs12982115	A	G	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr19	49248730	rs838145	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr19	49254573	rs838137	T	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr19	49259529	rs838133	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr19	49260101	rs490942	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr19	49261368	rs739320	T	C	8035.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	49299533	rs557106	A	G	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	49299827	rs35829476	C	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:83,67:0.45:150
chr19	49300431	rs35230038	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:113,84:0.43:197
chr19	49300605	rs526744	T	C	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	49317098	rs78535883	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr19	49318380	rs35299026	G	A	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:197,129:0.40:326
chr19	49336014	.	G	GT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=5.136;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.595;QD=2.81;ReadPosRankSum=-1.003;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr19	49339098	rs8110220	T	C	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:140,112:0.44:252
chr19	49340858	rs10407029	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr19	49342366	rs17272645	C	G	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:106,71:0.40:177
chr19	49342396	rs55966626	G	T	1795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=0.045;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:160,95:0.37:255
chr19	49349025	rs144491555	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.52;ReadPosRankSum=-0.197;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	49351149	rs28556985	C	T	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.353;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:72,67:0.48:139
chr19	49355385	rs45589039	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr19	49355405	rs17272658	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr19	49357656	rs4802513	T	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	49360522	rs73061629	C	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	49378180	.	A	AT	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-1.003;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:75,29:0.28:104
chr19	49378786	.	TTC	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=4.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.575;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:38,6:0.14:44
chr19	49384450	.	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.516;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	49401205	rs60572211	C	CTTAT	2162.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	49403925	rs45476398	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr19	49416554	rs5828369	CA	C	3586.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	49416936	rs746075	C	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr19	49421829	rs2287834	A	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr19	49421966	rs2287836	T	C	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:183,162:0.47:345
chr19	49422709	rs35642334	C	CTTAT	301.76	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=43.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	49424354	rs12979307	C	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.860;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=1.826;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr19	49424381	rs12979328	C	A	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=3.015;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:46,43:0.48:89
chr19	49424925	rs11671777	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr19	49425772	rs1532704	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr19	49458262	rs4645881	C	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	49459104	rs1805419	A	G	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	49464507	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=9.462;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.837;QD=0.75;ReadPosRankSum=1.547;SOR=0.085;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr19	49464971	rs704243	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.731;QD=12.38;ReadPosRankSum=-0.795;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr19	49469087	rs2230267	T	C	6676.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	49474027	rs2270938	A	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr19	49485548	rs5464	G	A	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-0.834;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:25,47:0.65:72
chr19	49485758	rs2270937	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr19	49513273	rs1062708	C	T	11116.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr19	49513349	rs2287760	C	G	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:156,102:0.40:258
chr19	49518484	rs753307	C	T	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr19	49518575	rs753308	A	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	49519058	rs749776	T	C	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	49519230	rs2013039	T	G	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	49519466	rs1056917	A	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	49519785	rs140502544	CT	C	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	49519793	rs2387588	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	49519855	rs1056914	T	G	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	49519873	rs6521	G	C	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	49519997	rs4002462	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	49520315	rs2387589	T	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	49520372	rs3752210	A	T	3459.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;MQRankSum=-0.398;QD=26.01;ReadPosRankSum=1.140;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:1,132:0.99:133
chr19	49520502	rs1960072	C	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	49522106	rs8108340	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	49528937	rs4802537	T	C	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	49529379	rs7255292	T	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	49529404	rs2387592	A	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	49535491	rs10413257	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr19	49540093	rs10853805	A	C	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr19	49558573	rs56007532	G	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	49558667	rs111775228	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.758;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-5.188;QD=4.97;ReadPosRankSum=1.542;SOR=1.529;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr19	49558678	rs35000456	T	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.517;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-5.485;QD=5.35;ReadPosRankSum=0.288;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr19	49558690	rs55995744	T	G	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-5.007;QD=5.64;ReadPosRankSum=0.058;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr19	49558729	rs12461085	G	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr19	49559329	rs3810179	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr19	49559518	rs3810180	C	G	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,68:0.65:104
chr19	49560521	rs3810183	G	A	177.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr19	49605530	rs10419811	A	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	49618457	rs1009212	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr19	49618681	rs5828374	CATG	C	3760.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:113,100:0.47:213
chr19	49618778	rs1009213	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr19	49621276	.	GT	G	1839.73	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:88,57:0.39:145
chr19	49621355	rs1009214	C	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr19	49621592	rs1060967	G	C	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.764;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:110,71:0.39:181
chr19	49621964	rs2232003	T	C	8892.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr19	49632079	rs4802565	C	A	14506.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:2,548:1.00:550
chr19	49632309	rs4802566	T	C	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	49632500	rs4802567	C	T	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	49632772	rs1559155	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.51;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	49636633	rs2287761	G	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=0.918;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr19	49638956	rs745124	C	G	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	49639948	rs2303052	A	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.562;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	49640002	rs2303053	G	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr19	49643404	rs3764624	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.417;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.356;SOR=2.925;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr19	49644593	rs7250958	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr19	49644840	rs112961847	C	CGTGT	1093.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr19	49644858	rs147872140	A	AGT	324.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr19	49645176	rs10417260	C	G	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.136;QD=7.92;ReadPosRankSum=0.167;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:65,44:0.40:109
chr19	49645194	rs113859565	A	ATG	771.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:77,44:0.36:121
chr19	49646006	rs4545921	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	49649051	rs3764625	T	G	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	49649498	rs10421292	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr19	49651790	rs4802576	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	49652128	rs112505587	GT	G	2779.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	49652130	rs116573491	G	A	2788.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	49654421	rs2278004	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.838;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	49655174	rs1423520	A	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	49657710	.	ACATCAT	A,ACAT	6000.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.161;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.39;MQRankSum=0.358;QD=36.59;ReadPosRankSum=1.528;SOR=0.407;set=HC	GT:AD:AF:DP	1/2:3,22,139:0.13,0.85:164
chr19	49657889	rs147238387	T	TTCC	2173.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:81,61:0.43:142
chr19	49658209	rs3745297	A	C	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr19	49658367	rs3745298	C	T	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	49658390	rs3745299	T	C	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	49661112	rs3760663	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	49661547	rs11882563	A	G	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:108,146:0.57:254
chr19	49661582	rs3760664	T	C	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	49671442	rs35449031	A	AGT	787.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr19	49674495	rs1477363	C	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,24:0.30:81
chr19	49684787	.	C	CTTTT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.53;ReadPosRankSum=0.231;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	49685708	rs371907605	CCCATCCATCCATCCAT	C,CCCATCCATCCAT	3637.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.978;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=35.66;ReadPosRankSum=1.282;SOR=1.911;set=HC	GT:AD:AF:DP	1/2:2,48,52:0.47,0.51:102
chr19	49691822	rs909010	T	C	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	49692373	rs1175791	C	G	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	49700205	rs66528168	A	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	49703401	rs1175806	T	C	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	49703764	rs10403114	A	G	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	49705116	rs11353757	CA	C	1349.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	49794028	rs45549132	G	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr19	49797887	rs3214611	TA	T	69.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	49812403	rs2278405	G	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr19	49838891	rs354020	C	A	15657.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr19	49839015	rs354021	T	C	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	49841054	rs354026	G	T	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr19	49845895	rs8108669	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr19	49869051	rs2303759	T	G	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:104,81:0.44:185
chr19	49878115	rs1054770	G	A	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:81,98:0.55:179
chr19	49878196	rs2288481	G	A	2521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=6.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=2.787;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:186,129:0.41:315
chr19	49894027	rs61018355	T	TC	912.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr19	49894028	rs57104627	T	C	921.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr19	49894152	rs7256629	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:73,63:0.46:136
chr19	49894217	rs7256984	G	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=-2.141;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:69,54:0.44:123
chr19	49899076	rs10405154	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr19	49900877	rs9304688	A	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chr19	49901125	rs12977735	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr19	49901318	rs10421748	T	C	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.053;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:68,54:0.44:122
chr19	49901484	rs12980364	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	49902990	rs9807898	A	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	49903008	rs8110789	G	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	49910473	rs111577017	A	G	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:83,80:0.49:163
chr19	49925667	rs12974629	T	G	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:91,70:0.43:161
chr19	49926530	.	CCAG	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.456;QD=0.25;ReadPosRankSum=1.093;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:201,17:0.08:218
chr19	49930721	rs4802605	T	C	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr19	49935927	rs5828394	A	AG	2496.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	49939719	rs2946848	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr19	49940131	rs3826718	G	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	49944730	rs58045148	CA	C	2567.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	49949589	rs1043263	A	T	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	49950298	rs13394	C	T	7510.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	49950356	rs12443	C	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	49953051	rs61447252	CTTTTT	C	533.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;QD=38.12;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	49954282	rs68029391	CTT	C	154.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.000;QD=12.89;ReadPosRankSum=1.349;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	49954356	rs6509432	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	49954803	rs2293013	C	T	9996.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.03;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	49954807	rs2293012	T	G	9989.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	49955016	rs2293011	G	T	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	49956460	rs11267495	GTAGCCCCACCCCATTCCCAT	G	2623.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	49956690	rs3760670	C	T	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	49963971	rs35639941	A	AT	483.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.000;QD=15.60;ReadPosRankSum=-0.822;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr19	49964977	rs1320303	C	G	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	49965131	rs76844851	GG	AC	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	49965173	rs7259560	A	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	49967680	rs2293009	G	A	8172.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	49968869	rs113972827	G	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:77,54:0.41:131
chr19	49969310	rs2914668	A	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	49971596	rs11879863	C	T	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	49973784	rs1055637	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	49978936	rs7251338	G	C	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=1.120;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:50,50:0.50:100
chr19	49979107	rs61254172	CT	C	657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=0.754;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:41,43:0.51:84
chr19	49979225	.	G	T	1852.77	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:47,75:0.61:122
chr19	49979893	rs3826717	A	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr19	49983673	rs1042120	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr19	49990843	rs2271951	A	G	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	49994470	rs59192944	T	A	3236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.71;ReadPosRankSum=1.363;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:87,86:0.50:173
chr19	49994476	rs56974957	T	C	3205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.31;ReadPosRankSum=1.286;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:84,82:0.49:166
chr19	49999647	rs17555056	C	G	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=-0.543;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:92,61:0.40:153
chr19	49999880	rs4802613	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	50002607	rs739349	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	50002686	rs756628	T	C	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-0.541;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:38,47:0.55:85
chr19	50016759	rs142385484	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-1.369;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	50028163	rs1132990	A	G	4678.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:321,240:0.43:561
chr19	50028306	rs71724821	CCTGCTG	C	1714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=9.463;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.626;QD=12.34;ReadPosRankSum=-0.277;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:90,49:0.35:139
chr19	50059982	rs4594362	C	G	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:39,62:0.61:101
chr19	50086287	rs112161078	C	CA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.349;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr19	50086626	rs3745473	T	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr19	50086806	rs3745474	C	T	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:134,117:0.47:251
chr19	50091763	rs117225796	G	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,57:0.48:118
chr19	50091798	rs2288920	G	T	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-2.269;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:50,47:0.48:97
chr19	50093141	rs62128117	C	A	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:168,161:0.49:329
chr19	50093248	rs144521999	A	T	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr19	50093454	rs4429389	A	T	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	50093572	rs7249925	A	G	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:184,163:0.47:347
chr19	50096421	rs10404887	C	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr19	50097547	rs7251877	A	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr19	50097607	rs57940349	C	T	3123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.870;QD=9.73;ReadPosRankSum=0.573;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:172,149:0.46:321
chr19	50097784	rs10414643	T	C	3611.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:147,151:0.51:298
chr19	50097932	rs16981329	G	C	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:184,173:0.48:357
chr19	50098423	rs12462756	G	A	4218.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:249,210:0.46:459
chr19	50099422	rs73058052	C	T	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:118,70:0.37:188
chr19	50100295	rs3745475	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:131,76:0.37:207
chr19	50103252	rs2116922	G	A	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:108,91:0.46:199
chr19	50124663	rs73058085	G	A	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,56:0.50:112
chr19	50128543	rs7256146	A	G	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:105,112:0.52:217
chr19	50140068	rs1368464	C	T	12686.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr19	50140092	rs1865077	G	A	11974.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr19	50140209	rs1368463	C	T	11375.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr19	50140246	rs1865076	C	A	13087.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:7,519:0.99:526
chr19	50154904	rs7251334	A	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	50155353	rs3745471	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=2.300;QD=6.19;ReadPosRankSum=0.131;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr19	50155361	rs3833232	GCCGCTC	G	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=2.300;QD=6.54;ReadPosRankSum=0.524;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr19	50156896	rs10401743	T	C	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	50161807	rs7047	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr19	50162909	rs7251	C	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr19	50169020	rs2304204	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	50177171	rs3745469	G	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	50182697	rs8109314	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=1.579;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	50183980	rs1433102	TT	CC	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	50216118	rs56405217	T	TG	6579.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	50250872	rs8109529	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	50265549	rs3745477	T	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	50285809	rs76907345	C	T	4377.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:181,206:0.53:387
chr19	50308873	rs147959530	G	A	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:64,82:0.56:146
chr19	50312048	rs11557714	G	A	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:126,145:0.54:271
chr19	50322611	.	T	TGATGGCTTGGGTGGTTGGGGTCCCTGTAAGGGGCCGTGCATGAGG	6865.73	.	AC=2;AF=1.00;AN=2;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=46.71;SOR=1.691;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	50322619	.	TG	T	2963	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=4;HapScore=1;MGOF=7;MMLQ=28;MQ=60.0;NF=6;NR=82;PP=2963;QD=20;SC=AGTGATGGCTTGGGGTGGTTG;SbPval=0.75;Source=Platypus;TC=126;TCF=11;TCR=115;TR=88;WE=50322665;WS=50322584;set=Platypus	GT:AD:AF:DP	0/1:38,88:0.70:126
chr19	50331678	rs5828413	CT	C	2857.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	50335510	rs3745480	T	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	50354171	.	G	T	3778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.688;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.782;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:172,187:0.52:359
chr19	50358170	rs1290657	T	C	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	50379983	rs192507165	G	A	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:112,150:0.57:262
chr19	50383591	rs8109661	A	G	7697.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr19	50404939	rs1290754	T	G	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:96,142:0.60:238
chr19	50411742	rs892028	A	G	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:225,196:0.47:421
chr19	50412217	rs1062798	C	G	3150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=6.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=1.669;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:156,154:0.50:310
chr19	50412417	rs999583	G	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr19	50412873	rs145084636	G	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:93,102:0.52:195
chr19	50434021	rs11554772	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr19	50435747	rs283525	T	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:158,83:0.34:241
chr19	50435862	rs283526	C	T	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr19	50435998	rs34877198	C	T	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:84,68:0.45:152
chr19	50462244	rs1811375	G	A	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:96,106:0.52:202
chr19	50473221	rs377111720	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.292;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=49.487;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-8.842;QD=0.20;ReadPosRankSum=0.414;SOR=5.724;set=HC	GT:AD:AF:DP	0/1:222,26:0.10:248
chr19	50496281	rs113770287	G	GAC	1157.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	50657786	rs66651303	AG	A	10141.73	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	50665984	rs73932425	C	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	50666389	rs61742305	G	A	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	50735340	rs11666328	C	T	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:89,76:0.46:165
chr19	50750419	rs607227	C	T	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:116,93:0.44:209
chr19	50760716	rs378811	C	G	11845.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr19	50775742	rs1651543	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	50779988	rs788337	A	T	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.145;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:47,29:0.38:76
chr19	50780082	rs11669191	C	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr19	50780186	rs7259185	G	A	261.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr19	50781296	rs79043031	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,39:0.45:87
chr19	50783168	rs149242097	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr19	50789967	rs10406788	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr19	50792684	rs45591233	C	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,38:0.35:109
chr19	50796352	rs651044	C	A	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	50796905	rs3745509	G	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-1.186;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr19	50796960	rs3745510	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr19	50805138	rs3826772	C	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr19	50812221	rs889002	A	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	50813169	rs12978083	A	C	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:150,137:0.48:287
chr19	50813263	rs627491	T	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	50818252	rs115192757	G	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr19	50832152	rs375912738	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.62;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	50837859	rs56849250	C	CA	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=33.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	50862768	rs11670727	C	T	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:76,61:0.45:137
chr19	50880741	rs2695121	T	C	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:85,65:0.43:150
chr19	50881820	rs55652650	A	AAAC	6317.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	50882169	rs2248949	A	G	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:61,68:0.53:129
chr19	50909389	rs1673041	T	G	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr19	50919797	rs3218776	C	T	1138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.504;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:57,55:0.49:112
chr19	50922370	rs2244095	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr19	50926264	rs1673030	TG	CC	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.67;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	50926742	rs3745516	A	G	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	50936378	rs3765069	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	50938271	rs187112418	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.996;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-2.183;QD=3.63;ReadPosRankSum=-0.257;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr19	50940778	rs61731791	C	T	3185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=3.092;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:163,157:0.49:320
chr19	50941000	rs73054411	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	50951689	rs2445835	A	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	50955164	rs199625688	G	T	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,102:0.52:195
chr19	50957677	rs112268715	G	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.460;QD=6.98;ReadPosRankSum=1.271;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	50958995	rs12980584	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	50962062	rs3745518	G	A	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	50965272	rs25668	T	C	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	50967686	rs34339443	G	A	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:99,111:0.53:210
chr19	50969325	rs1274604	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	50982086	rs921938	C	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	50983930	rs10409679	C	T	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	50986074	rs14031	G	A	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	51014850	rs7254387	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.19;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	51015404	rs12977172	T	C	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	51017835	rs889131	G	A	12694.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr19	51052189	rs11880112	T	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	51128661	rs16986142	T	C	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	51128856	rs10426057	A	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	51132746	rs61746970	G	A	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:60,95:0.61:155
chr19	51140654	rs3815749	G	A	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	51140689	rs2287820	T	C	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	51140752	rs2287819	T	C	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	51159571	rs4801844	T	G	8528.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	51170706	rs3745521	A	G	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	51171188	rs750578	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr19	51171857	rs3890180	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=1.885;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	51200290	rs34959666	G	GC	4321.73	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:180,178:0.50:358
chr19	51227977	rs114190815	T	C	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	51228746	rs13866	C	T	5310.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:227,250:0.52:477
chr19	51228802	rs1053020	T	G	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	51262620	rs10424138	A	C	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	51262668	rs12983009	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	51294003	rs1978605	T	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=6.994;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	51297312	rs45461494	C	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr19	51297825	rs55716643	GC	AA	3377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.600;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:135,91:0.40:226
chr19	51297944	rs266123	A	G	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	51301395	rs4801853	C	T	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr19	51301456	rs4802741	G	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:160,117:0.42:277
chr19	51302154	rs1043315	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr19	51302202	rs3745526	T	A	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr19	51302455	rs143867891	G	GC	1706.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,67:0.66:102
chr19	51302473	rs3833237	T	TAAG	3881.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	51305784	rs2560931	C	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;MQ=59.24;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	51321813	rs2411334	A	G	10610.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr19	51321919	rs3212841	C	CCAGCCTTCGCAGGCCACACCCTGAAGCCACTCTCCACCCGCT	4667.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=45.32;SOR=4.997;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	51323473	rs5516	C	G	12657.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr19	51323501	rs1054713	A	G	10377.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr19	51323881	rs2659103	T	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	51327163	rs35641597	GC	G	849.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	51327172	rs56125748	C	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	51330423	rs61752560	C	G	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,41:0.46:90
chr19	51331199	rs142271509	G	GT	2150.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=43.01;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	51331204	.	T	TTG	1185	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=4;HapScore=1;MGOF=4;MMLQ=28;MQ=60.25;NF=3;NR=26;PP=1185;QD=41.7586206897;SC=GCCCTGTTTTTGTTTGTTGTT;SbPval=0.55;Source=Platypus;TC=30;TCF=3;TCR=27;TR=29;WE=51331213;WS=51331194;set=Platypus	GT:AD:AF:DP	1/1:1,29:0.97:30
chr19	51331205	.	G	T	752	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=8;HapScore=1;MGOF=4;MMLQ=23;MQ=60.0;NF=12;NR=24;PP=752;QD=21.8547559041;SC=CCCTGTTTTTGTTTGTTGTTG;SbPval=0.59;Source=Platypus;TC=41;TCF=14;TCR=27;TR=36;WE=51331213;WS=51331194;set=Platypus	GT:AD:AF:DP	1/1:5,36:0.88:41
chr19	51331205	rs372866981	G	GT	2169.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	51334890	rs3745523	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-1.808;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr19	51359497	rs11573	T	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-1.255;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	51359503	rs1135766	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-0.870;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr19	51361315	rs12946	C	T	9294.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	51361472	rs2003783	C	A	3647.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:158,168:0.52:326
chr19	51361644	rs1810020	A	G	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	51361850	rs61729813	C	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:93,56:0.38:149
chr19	51362716	rs66592214	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr19	51362803	rs35192866	C	T	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=-0.004;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:105,67:0.39:172
chr19	51362955	rs45588133	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr19	51363398	rs1058205	C	T	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:193,112:0.37:305
chr19	51379893	rs198972	C	T	8170.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr19	51380110	rs6070	T	A	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	51380445	rs8105275	G	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,68:0.48:142
chr19	51381777	rs198977	C	T	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:256,172:0.40:428
chr19	51391121	rs66651444	A	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr19	51410171	rs73042387	G	A	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr19	51411636	rs2569527	G	T	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr19	51430868	rs59881416	G	A	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr19	51447065	rs1701949	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	51452250	rs183854	T	C	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	51455814	rs2739412	A	C	7232.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:4,289:0.99:293
chr19	51456005	rs2659093	T	G	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.62;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	51456015	rs11553092	G	A	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=3.334;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	51465096	rs1701950	C	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr19	51465200	rs112376245	A	AC	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	51466516	rs1654537	A	G	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	51480671	rs59354651	AGGTT	A	1249.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr19	51480840	rs1654528	C	G	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,68:0.51:134
chr19	51480982	rs1654527	T	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	51482969	rs1701924	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	51484984	rs1991820	C	T	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=-0.844;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr19	51484990	rs1991819	T	C	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.03;ReadPosRankSum=-0.241;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr19	51485013	rs1991818	C	T	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,53:0.54:99
chr19	51485194	rs1654523	C	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:56,75:0.57:131
chr19	51485622	rs2659067	A	G	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,82:0.55:149
chr19	51487067	rs1275221	T	C	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:80,129:0.62:209
chr19	51487175	rs1624358	T	G	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr19	51499195	rs1612902	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr19	51503524	rs1701946	T	C	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:74,57:0.44:131
chr19	51504075	rs1701947	A	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr19	51507020	rs2075802	T	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:120,61:0.34:181
chr19	51519364	rs2075688	T	G	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr19	51520487	rs3745535	A	C	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=2.360;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:43,33:0.43:76
chr19	51522291	rs2304157	G	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	51528041	rs3745539	C	T	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=1.817;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:86,89:0.51:175
chr19	51530693	rs1474520	G	A	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr19	51530741	rs61752567	C	G	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:125,120:0.49:245
chr19	51566873	rs10426620	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-0.965;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr19	51566943	rs2736433	G	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:66,86:0.57:152
chr19	51567176	rs2736431	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr19	51567990	rs10500306	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:90,56:0.38:146
chr19	51568029	rs2736434	G	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr19	51568066	rs12979090	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr19	51582994	rs11671800	G	T	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.100;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr19	51583003	rs6509518	A	G	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=0.707;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	51584743	rs2569489	A	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	51584951	rs35287116	T	C	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,79:0.60:132
chr19	51602298	rs12983578	C	G	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr19	51628529	rs2075803	A	G	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:166,159:0.49:325
chr19	51630482	rs2258983	C	A	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:81,77:0.49:158
chr19	51656218	rs273661	G	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	51656454	rs273662	A	T	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	51728477	rs12459419	C	T	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	51738917	rs35112940	G	A	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=1.342;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:74,113:0.60:187
chr19	51767205	rs6509523	C	T	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.201;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:82,73:0.47:155
chr19	51815243	rs4802779	G	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=2.214;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr19	51825238	rs34297802	C	T	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:64,72:0.53:136
chr19	51828595	rs60865738	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:83,61:0.42:144
chr19	51831759	.	GA	G	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=2.258;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr19	51835892	rs11402251	T	TG	5655.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	51850290	rs1130426	G	A	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	51850402	rs8112687	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr19	51853468	rs4802789	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	51856619	rs2004309	T	C	1901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=6.546;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=0.185;QD=19.02;ReadPosRankSum=-0.393;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:46,54:0.54:100
chr19	51856631	rs3889312	G	A	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=0.806;QD=19.40;ReadPosRankSum=0.840;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:42,44:0.51:86
chr19	51856641	rs3889313	G	C	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.167;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=0.777;QD=19.28;ReadPosRankSum=0.471;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:39,40:0.51:79
chr19	51869346	rs3786625	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr19	51874950	rs3009	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr19	51883727	rs2547318	G	A	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	51892218	rs3826665	G	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	51892683	rs8104425	T	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	51892812	rs3810094	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	51892850	rs3810095	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	51919434	.	G	GA	738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=2.141;QD=7.17;ReadPosRankSum=1.692;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:54,49:0.48:103
chr19	51920613	rs1010425	C	T	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	51984725	rs8106673	T	A	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:78,87:0.53:165
chr19	52000624	rs3752135	T	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	52000672	rs3829658	G	A	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	52001485	rs11668530	G	A	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	52002317	rs4801871	G	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	52002488	rs968491	C	A	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	52002729	rs2009362	G	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	52003058	rs10420446	C	T	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	52003089	rs10420457	C	T	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	52003331	rs6509544	G	C	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	52004469	rs3810108	C	T	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	52004551	rs3810109	C	T	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	52004743	rs3810110	G	A	11709.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr19	52004791	rs66949844	G	GC	19050.73	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr19	52004795	rs61742108	G	T	19236.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	52031162	rs897783	A	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr19	52031648	rs10419617	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,53:0.52:102
chr19	52032964	rs3976745	C	G	3642.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:183,164:0.47:347
chr19	52033158	rs35931837	C	T	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:93,100:0.52:193
chr19	52033742	rs2305772	G	A	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr19	52034339	rs73053415	G	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr19	52034940	rs1551559	C	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr19	52085291	rs1543923	T	C	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	52090100	rs45541134	T	C	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:176,137:0.44:313
chr19	52091782	rs1063973	A	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr19	52101918	rs1868947	T	C	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr19	52104560	rs3752127	T	C	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.373;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:66,56:0.46:122
chr19	52104713	rs3752126	G	C	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr19	52130337	rs8105105	T	C	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.036;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:37,45:0.55:82
chr19	52131310	rs61736486	C	T	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,52:0.45:115
chr19	52132524	.	TAC	T,TACACACACAC	614.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=29;set=Intersection	GT:AF:DP	0/1:0.76:17
chr19	52132986	rs200975295	A	G	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	52133060	rs2278833	G	T	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:109,99:0.48:208
chr19	52196453	rs12976445	T	C	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,66:0.49:134
chr19	52208277	rs11382950	G	GC	3584.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	52227137	rs58597876	T	TACAC,TACACAC	1795.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.65;ReadPosRankSum=1.392;SOR=0.551;set=HC	GT:AD:AF:DP	1/2:6,28,21:0.51,0.38:55
chr19	52249211	rs867228	T	G	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	52249672	rs1042229	A	C,G	7556.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.04;SOR=0.846;set=HC	GT:AD:AF:DP	1/2:0,93,129:0.42,0.58:222
chr19	52249672	.	ATTTATCCT	CTTTATCCT,GTTTATCCA	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=26;MQ=60.0;NF=45,49;NR=42,58;PP=2962,2944;QD=20;SC=CAACGGCCACATTTATCCTCT;SbPval=0.4;Source=Platypus;TC=205;TCF=98;TCR=107;TR=87,107;WE=52249688;WS=52249662;set=Platypus	GT:AF:DP	0/1:0.42:205
chr19	52249680	rs5030880	T	A	4823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.592;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=4.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.97;ReadPosRankSum=-0.066;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:87,123:0.59:210
chr19	52250216	rs5030878	A	G	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	52520714	rs12976476	G	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	52587907	rs11084141	G	A	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-2.205;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:66,27:0.29:93
chr19	52587917	rs11084142	A	G	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-1.205;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:74,33:0.31:107
chr19	52659991	rs1821278	A	G	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:118,118:0.50:236
chr19	52660279	rs1366245	C	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:64,72:0.53:136
chr19	52660783	rs17696575	A	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr19	52660830	.	GT	G	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.761;QD=6.20;ReadPosRankSum=-1.526;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	52664019	rs3794976	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	52693289	rs67495004	G	GC	496.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=0.436;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:38,25:0.40:63
chr19	52724095	rs4802905	T	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr19	52803669	rs3217319	CTG	C	6788.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	52819231	rs35424613	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.900;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr19	52825235	rs8102373	A	G	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	52852523	rs321953	T	C	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	52869022	rs2241586	G	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	52869278	rs321937	G	C	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	52869312	rs162120	T	C	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	52869534	rs162119	G	A	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	52873023	rs707312	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr19	52873325	rs12983120	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:56,40:0.42:96
chr19	52876385	rs14048	G	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,71:0.48:149
chr19	52877464	rs35732198	A	AT	180.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-1.731;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	52877716	.	A	AT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.869;QD=0.39;ReadPosRankSum=0.957;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:77,16:0.17:93
chr19	52887282	rs324125	A	G	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr19	52888048	rs324124	G	A	4705.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:191,219:0.53:410
chr19	52893538	rs2657917	T	C	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.66;SOR=1.584;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	52893538	.	TG	CA,CG	689	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=30,60;NR=11,25;PP=564,689;QD=15.0601920698;SC=GCTTCCCATCTGCTCCGCTCC;SbPval=0.72;Source=Platypus;TC=87;TCF=60;TCR=27;TR=41,85;WE=52893547;WS=52893528;set=Platypus	GT:AF:DP	0/1:0.47:87
chr19	52893539	rs2657916	G	A	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=0.065;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:43,48:0.53:91
chr19	52905067	rs324091	A	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	52909303	rs2290745	C	T	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr19	52909458	rs2245620	T	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	52909989	rs11668956	A	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	52917590	rs162124	G	A	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	52917626	rs162123	A	G	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	52920006	rs10664588	C	CTG	4965.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	52937100	rs2560996	G	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:79,39:0.33:118
chr19	52937339	rs17780173	G	A	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:179,141:0.44:320
chr19	52937487	rs2608546	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr19	52937530	rs2560997	C	T	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	52938361	rs11084161	C	A	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	52938417	rs11084162	A	G	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	52938459	rs11084163	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	52940931	rs1428179	A	T	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	52941171	rs1428180	T	C	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	52941540	rs1366257	G	A	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	52941618	rs1366258	A	C	5756.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	52941847	rs1366259	A	T	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	52942159	rs2608497	A	G	11911.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr19	52942445	rs2608498	C	T	15376.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	52942495	rs2561001	G	A	15351.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	52942734	rs2446079	C	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	52954507	rs324104	T	C	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=32.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	52954507	.	TG	CA,CG	873	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=22;MQ=59.81;NF=19,54;NR=18,52;PP=371,873;QD=11.472104726;SC=CCGGAGGTGCTGAGGAGCCAA;SbPval=0.59;Source=Platypus;TC=107;TCF=54;TCR=53;TR=37,106;WE=52954516;WS=52954497;set=Platypus	GT:AF:DP	0/1:0.35:107
chr19	52954508	.	G	A	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=3.355;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.070;QD=6.07;ReadPosRankSum=-0.936;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:81,45:0.36:126
chr19	53014346	rs161931	G	A	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:169,132:0.44:301
chr19	53075519	rs8104138	G	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr19	53075726	rs162834	G	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	53075734	rs3826655	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	53077280	rs162833	C	G	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:118,77:0.39:195
chr19	53077411	rs162832	T	C	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	53085416	rs12975229	G	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,72:0.49:146
chr19	53085659	rs366793	C	T	8064.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr19	53085813	rs3745101	T	C	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr19	53086032	rs427127	C	T	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:94,53:0.36:147
chr19	53086124	rs373554	C	A	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr19	53086598	rs3745102	G	A	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:122,127:0.51:249
chr19	53099965	rs2279151	A	G	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.74;ReadPosRankSum=-1.385;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr19	53099975	rs2279152	C	G	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.106;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.34;ReadPosRankSum=-1.007;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:34,33:0.49:67
chr19	53100585	rs1802617	G	T	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:116,110:0.49:226
chr19	53116933	.	GCCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT	G	1340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.230;QD=5.56;ReadPosRankSum=-3.138;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:186,55:0.23:241
chr19	53117531	rs1056185	C	T	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	53117809	rs10406458	C	A	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	53270384	rs1820128	A	G	10350.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr19	53303527	rs8107444	A	G	8576.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	53303705	rs10417163	T	G	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:143,109:0.43:252
chr19	53304563	rs13382164	T	C	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:190,150:0.44:340
chr19	53311395	rs7257656	G	A	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	53344051	rs112227284	T	C	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:299,145:0.33:444
chr19	53344118	rs10419826	C	G	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:279,113:0.29:392
chr19	53344426	rs12462929	T	C	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:207,171:0.45:378
chr19	53344701	rs10420793	A	G	3579.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:227,173:0.43:400
chr19	53345060	rs61747364	G	C	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:175,101:0.37:276
chr19	53345076	rs61747369	T	C	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:168,95:0.36:263
chr19	53345095	rs61729939	G	A	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:146,98:0.40:244
chr19	53345110	rs61729942	A	G	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:150,109:0.42:259
chr19	53345176	rs61732713	C	T	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:186,177:0.49:363
chr19	53345447	rs60596790	C	T	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:94,84:0.47:178
chr19	53351266	rs7256165	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr19	53369486	rs35128688	CAT	C	214.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	53370013	rs12973227	C	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr19	53384185	rs6509701	C	T	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	53391542	rs201499523	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.918;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.32;MQRankSum=-0.847;QD=4.64;ReadPosRankSum=-1.625;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	53391549	rs200638171	A	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.586;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.06;MQRankSum=2.445;QD=23.94;ReadPosRankSum=1.076;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr19	53411347	rs7256037	C	A	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:248,137:0.36:385
chr19	53411368	rs7256260	G	A	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:227,130:0.36:357
chr19	53411448	rs7256400	G	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:94,50:0.35:144
chr19	53453777	rs8110062	C	T	10712.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	53454475	rs33949217	C	CACT	8777.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	53454789	rs12459008	A	T	8157.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	53456490	.	C	CA	20	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5041;HP=11;HapScore=3;MGOF=5;MMLQ=23;MQ=59.58;NF=2;NR=1;PP=20;QD=10.6666666667;SC=ACTAAAAATACAAAAAAAAAA;SbPval=0.32;Source=Platypus;TC=8;TCF=3;TCR=5;TR=3;WE=53456498;WS=53456480;set=Platypus	GT:AD:AF:DP	1/0:5,3:0.38:8
chr19	53456645	rs66883833	C	CAA	126.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.02;ReadPosRankSum=0.366;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr19	53513447	rs11672445	C	T	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:137,125:0.48:262
chr19	53517312	rs370383096	T	C	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=49.38;MQRankSum=-2.241;QD=7.39;ReadPosRankSum=0.203;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr19	53518514	rs11670105	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr19	53553497	rs2195311	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=1.540;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	53554075	rs1650983	A	G	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:120,126:0.51:246
chr19	53572494	rs11665677	G	T	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:173,134:0.44:307
chr19	53576465	rs329734	C	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	53576589	rs329733	C	G	8330.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	53577419	rs8105668	G	C	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	53577668	rs167918	C	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr19	53589677	rs329718	C	T	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	53612311	rs4803051	T	C	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	53612720	rs1560099	T	C	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:86,106:0.55:192
chr19	53612745	rs1133327	T	C	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	53612757	rs1054485	T	G	5707.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	53612989	rs1054484	A	G	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:108,139:0.56:247
chr19	53618698	rs12609961	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	53619741	rs12608974	T	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr19	53619864	rs140683001	CTCTT	C	271.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	53625645	rs34974523	C	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.053;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:20,49:0.71:69
chr19	53626112	rs2303689	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr19	53643497	rs1650972	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr19	53644443	rs1661935	G	A	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:229,221:0.49:450
chr19	53645291	rs2195310	T	C	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:115,130:0.53:245
chr19	53651845	rs10694633	T	TTC	4157.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	53667637	rs4803054	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr19	53667804	rs4801958	C	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:143,102:0.42:245
chr19	53667913	rs12459469	A	G	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:179,102:0.36:281
chr19	53667940	rs12459471	A	G	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:177,106:0.37:283
chr19	53669273	rs4801959	T	C	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	53669492	rs12460170	A	G	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:100,82:0.45:182
chr19	53669653	rs12460233	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	53678924	rs4289099	C	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr19	53706984	rs12610332	G	A	7508.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	53707097	rs11084225	T	C	8319.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	53707289	rs7249771	C	T	9117.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr19	53716190	rs10775558	A	G	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	53716278	rs10853858	A	G	5503.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	53716460	rs10853859	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	53727097	rs36114232	G	A	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	53727100	rs35443981	T	TTA	2608.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	53727282	rs11084227	A	G	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	53727392	rs10401578	T	C	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	53727573	rs12985503	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	53727591	rs10401984	T	C	8681.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.49;QD=43.85;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	53727591	.	TCA	CCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=3;HapScore=1;MGOF=25;MMLQ=23;MQ=53.66;NF=73;NR=88;PP=2947;QD=20;SC=GTGATACTTTTCAACTGGCTT;SbPval=0.47;Source=Platypus;TC=179;TCF=78;TCR=101;TR=161;WE=53727601;WS=53727581;set=Platypus	GT:AD:AF:DP	1/1:18,161:0.90:179
chr19	53727593	rs11673594	A	G	8681.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.46;QD=46.43;SOR=1.050;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	53727644	rs12972588	T	C	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	53728096	rs7248561	A	G	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.09;QD=44.92;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	53728105	rs7248883	G	C	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.22;QD=43.77;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	53728160	rs7248781	C	T	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	53728218	rs11666631	G	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	53728280	rs7248812	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	53740822	rs8113436	T	C	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:71,72:0.50:143
chr19	53741068	rs12984188	C	T	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:107,86:0.45:193
chr19	53741188	rs12984473	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr19	53754736	rs2965240	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr19	53755007	rs28676766	T	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.269;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.30;ReadPosRankSum=1.102;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:30,35:0.54:65
chr19	53755015	rs45575234	A	G	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.18;ReadPosRankSum=0.195;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr19	53760825	rs2914370	C	T	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	53761740	rs2965249	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	53761775	rs112910446	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr19	53769861	rs16984664	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	53769898	rs57086064	A	G	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.420;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.75;ReadPosRankSum=0.986;SOR=0.259;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr19	53769903	rs80041332	G	T	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=1.839;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	53769906	rs57683214	G	C	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=1.502;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr19	53770261	rs12977715	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-6.646;QD=0.72;ReadPosRankSum=-2.196;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:88,13:0.13:101
chr19	53770764	rs112711591	G	A	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:96,94:0.49:190
chr19	53787683	rs71363323	C	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.519;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=8.038;MLEAC=1;MLEAF=0.500;MQ=51.43;MQRankSum=-7.641;QD=3.45;ReadPosRankSum=-0.156;SOR=1.363;set=HC	GT:AD:AF:DP	0/1:153,41:0.21:194
chr19	53788046	rs34943875	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.948;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.368;MLEAC=1;MLEAF=0.500;MQ=52.73;MQRankSum=-5.630;QD=1.49;ReadPosRankSum=-1.301;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:90,17:0.16:107
chr19	53803121	rs75059813	C	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:91,64:0.41:155
chr19	53818436	rs7256991	C	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr19	53818473	rs7257010	C	T	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	53818502	rs2865265	A	G	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	53818565	rs56741265	G	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr19	53818738	rs200012275	T	TG	219.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.66;QD=31.39;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	53819176	rs11880867	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr19	53849446	rs4803089	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr19	53849599	rs8108958	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr19	53849632	rs11406858	G	GC	1563.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	53849700	rs4803090	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	53854397	rs10415799	G	C	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:224,173:0.44:397
chr19	53879561	rs72163028	GACA	G	589.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	53884412	rs4438413	G	A	10696.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	53885276	rs60179423	C	A	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:96,109:0.53:205
chr19	53885352	rs58896082	C	T	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:41,79:0.66:120
chr19	53905129	rs111753331	TA	T	1054.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.610;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.839;QD=11.71;ReadPosRankSum=0.952;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:14,76:0.84:90
chr19	53905469	rs3975046	A	G	2442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.407;QD=10.48;ReadPosRankSum=-2.081;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:122,111:0.48:233
chr19	53905501	rs72582439	CTTTTT	C	1951.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=5.195;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.331;QD=34.85;ReadPosRankSum=0.866;SOR=3.312;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr19	53910912	rs2061773	G	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	53911973	rs10425136	A	G	19385.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:8,692:0.99:700
chr19	53912242	rs10426347	G	A	11536.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr19	53926318	rs36087592	T	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.22;QD=42.80;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	53926320	rs34818233	T	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.11;QD=46.37;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	53958126	rs2708743	T	G	9429.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	53958263	rs1984432	G	A	10485.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr19	53959343	rs2708742	G	A	6455.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:263,287:0.52:550
chr19	53959568	rs2617726	G	C	5433.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:276,257:0.48:533
chr19	53991335	rs2617675	G	A	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	53991404	rs2617674	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-1.943;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	53993670	rs2617667	G	A	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:185,129:0.41:314
chr19	53995004	rs2708845	G	A	7852.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	54007145	rs72487103	G	A	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:4,72:0.95:76
chr19	54072757	rs3746304	C	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	54072782	rs3746303	T	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr19	54074747	rs3746301	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr19	54075076	rs6509792	A	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:84,37:0.31:121
chr19	54075126	rs6509793	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,21:0.32:66
chr19	54080144	rs8109631	A	G	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	54172317	rs1968439	A	G	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.56;QD=21.98;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	54177273	rs7258128	T	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	54183164	rs78371552	A	G	2540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.564;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:163,127:0.44:290
chr19	54183186	rs113885738	C	T	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:175,133:0.43:308
chr19	54183313	rs111630758	G	C	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr19	54185311	rs28653280	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr19	54185492	rs75598818	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:78,44:0.36:122
chr19	54188219	rs2060230	G	A	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	54191869	rs1988088	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,31:0.31:101
chr19	54194034	rs12975184	T	C	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:96,66:0.41:162
chr19	54194049	rs57963210	GAA	G	2322.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:119,74:0.38:193
chr19	54194080	rs12973198	A	C	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:165,110:0.40:275
chr19	54197633	rs10413288	A	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:71,43:0.38:114
chr19	54201756	rs73057685	C	G	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.034;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.483;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.051;QD=14.00;ReadPosRankSum=-1.144;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:31,55:0.64:86
chr19	54204686	rs34886598	G	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	54209600	rs4803164	A	G	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:98,97:0.50:195
chr19	54209679	rs7251827	T	A	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:40,60:0.60:100
chr19	54215465	rs4803166	C	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	54216777	rs5828551	T	TTTTG	3180.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	54216813	rs2865855	A	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=27.78;SOR=2.024;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	54219769	rs4801998	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr19	54220019	rs11306531	GT	G	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.752;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr19	54224191	rs12973211	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	54224285	rs58416318	CA	C	4796.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=23.40;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	54225616	rs10426037	T	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr19	54238305	rs11427814	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=9.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.18;ReadPosRankSum=-0.457;SOR=3.556;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	54255878	rs56196717	GTTT	G	1570.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;QD=31.41;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:4,46:0.92:50
chr19	54257185	rs611356	C	G	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=45.07;SOR=1.586;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	54257190	rs62144158	AC	GA	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=44.96;SOR=1.655;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	54261644	rs3901466	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	54291832	rs12983273	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr19	54307322	rs12460528	G	A,T	8940.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=386;set=Intersection	GT:AF:DP	1/2:0.48,0.52:384
chr19	54308554	rs4806773	C	T	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	54308775	rs56049734	C	CTT	236.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.22;ReadPosRankSum=0.099;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr19	54310961	rs2866112	G	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	54311090	rs11084300	C	T	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	54314585	rs6509827	G	A	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	54327313	rs34436714	C	A	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr19	54376625	rs112349507	C	CA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=8.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.109;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr19	54385437	rs307942	A	C	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	54385820	rs2547362	C	T	7624.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	54387313	rs307956	A	T	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	54394965	rs3745406	T	C	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:113,112:0.50:225
chr19	54395098	rs3745405	G	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr19	54396006	.	GCACA	G	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.409;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr19	54396012	.	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=4.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.795;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr19	54396046	rs146099614	G	GCACA	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr19	54445594	rs11324363	AG	A	4029.73	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:161,156:0.49:317
chr19	54483311	rs71949256	CGT	C	517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=14.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.635;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr19	54483335	.	T	TGC	263.73	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr19	54483337	rs202060954	T	C	769.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=5.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=1.510;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr19	54483337	.	TGT	CGC	1373	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=24;MQ=59.82;NF=2;NR=29;PP=1373;QD=46.0150927375;SC=TGTGTGTGTGTGTGCGCGCGC;SbPval=0.99;Source=Platypus;TC=83;TCF=18;TCR=65;TR=31;WE=54483347;WS=54483325;set=Platypus	GT:AD:AF:DP	1/0:52,31:0.37:83
chr19	54483339	rs12979538	T	C	1862.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.441;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.12;ReadPosRankSum=-0.672;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:2,56:0.97:58
chr19	54485568	.	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.336;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:81,31:0.28:112
chr19	54544092	rs34886038	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	54544177	rs1035829	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr19	54545390	rs34610948	A	AC	2033.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	54561385	rs11673528	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	54561493	.	T	TAAAAAAAAA	590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=10.772;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.281;QD=6.56;ReadPosRankSum=-0.248;SOR=2.524;set=HC	GT:AD:AF:DP	0/1:65,25:0.28:90
chr19	54561792	rs11669427	G	A	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr19	54566901	rs662850	C	T	5070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.093;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:244,246:0.50:490
chr19	54579363	rs4806706	C	A	8862.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	54600232	rs1657535	A	C	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	54603104	rs368883898	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.235;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	54604319	rs7253859	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	54606209	rs254260	T	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	54606405	rs254259	T	C	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:125,94:0.43:219
chr19	54609027	rs254257	A	G	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:167,140:0.46:307
chr19	54609170	rs254256	A	G	5402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=0.129;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:230,146:0.39:376
chr19	54609178	rs254255	C	G	5852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-1.495;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:253,170:0.40:423
chr19	54609692	rs254266	T	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	54609746	rs8100254	G	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	54611283	rs77147173	C	A	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=1.164;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	54611287	rs621147	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr19	54611560	rs254263	C	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr19	54611734	rs75622830	A	G	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:55,90:0.62:145
chr19	54627039	rs35291886	GCACA	G	966.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr19	54627097	rs2303557	T	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	54627915	rs11556769	C	T	4002.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:110,208:0.65:318
chr19	54628075	rs76781318	G	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr19	54631376	rs12977981	G	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.89;ReadPosRankSum=0.494;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	54631376	.	GGT	TGC	99	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=5;HapScore=3;MGOF=0;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=99;QD=50.8226249541;SC=ATACTCGGGGGGTCCGCTCAG;SbPval=1.0;Source=Platypus;TC=10;TCF=8;TCR=2;TR=3;WE=54631389;WS=54631366;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	54631378	rs171703	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	54631381	rs45513391	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.16;ReadPosRankSum=-0.000;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	54631877	.	T	TC	26	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5061;HP=4;HapScore=4;MGOF=16;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=26;QD=13.75;SC=TGCCCCAGCCTCCTCCCCCCC;SbPval=0.73;Source=Platypus;TC=7;TCF=2;TCR=5;TR=4;WE=54631888;WS=54631867;set=Platypus	GT:AD:AF:DP	1/0:3,4:0.57:7
chr19	54631880	rs74716353	T	C	226.18	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr19	54632352	rs608608	C	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	54632423	rs655240	T	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	54634830	rs62144168	C	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:64,49:0.43:113
chr19	54647078	rs34281370	T	TGG	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=1.091;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr19	54649671	rs36665	T	C	9881.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:9,386:0.98:395
chr19	54651774	rs35247489	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr19	54652203	rs43211	T	C	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	54653572	rs36661	C	T	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:49,98:0.67:147
chr19	54653597	rs1611078	CTT	C	2351.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,60:0.60:100
chr19	54657069	rs42318	C	T	5650.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:235,253:0.52:488
chr19	54657877	rs4806718	T	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr19	54664209	rs36657	G	C	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.035;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:50,70:0.58:120
chr19	54664752	rs36656	A	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:61,70:0.53:131
chr19	54665970	rs36655	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr19	54666060	rs12978996	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	54666357	rs2289146	C	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	54667709	.	CT	C	440.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.696;QD=14.22;ReadPosRankSum=0.000;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr19	54667748	rs36654	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	54671789	rs56242780	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.167;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr19	54672460	rs6509847	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.500;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.965;QD=15.19;ReadPosRankSum=-1.444;SOR=0.115;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr19	54675643	rs77215230	G	A	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:67,96:0.59:163
chr19	54676763	rs641738	C	T	2893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.004;QD=10.52;ReadPosRankSum=0.916;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:137,138:0.50:275
chr19	54676814	.	G	GC	1655.73	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr19	54677759	rs4806721	T	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	54691225	rs1865961	T	C	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	54694334	rs16985457	G	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr19	54695163	rs593073	T	C	145.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	54697079	rs7595	C	T	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	54697602	rs36622	G	A	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	54705207	rs36615	G	A	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-1.158;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:87,79:0.48:166
chr19	54705619	rs36614	A	G	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	54711258	rs2304523	T	G	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-1.086;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:41,50:0.55:91
chr19	54722275	rs1132609	G	A	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:66,83:0.56:149
chr19	54723029	rs61734492	TC	GA	8059.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;JOINED;set=Intersection	GT:AD:AF:DP	0/1:223,210:0.48:433
chr19	54723738	rs255772	G	C	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.727;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=12.280;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-1.137;QD=9.37;ReadPosRankSum=-1.608;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:55,41:0.43:96
chr19	54723891	.	C	CCG	3471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.857;ClippingRankSum=0.000;DP=458;ExcessHet=3.0103;FS=4.935;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-3.912;QD=7.87;ReadPosRankSum=0.764;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:334,107:0.24:441
chr19	54723893	.	CACT	C	3465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.454;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-4.245;QD=7.86;ReadPosRankSum=0.769;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:334,107:0.24:441
chr19	54723898	rs149120972	T	C	3387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.878;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-3.718;QD=7.88;ReadPosRankSum=1.002;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:325,105:0.24:430
chr19	54724006	rs4806726	C	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:73,31:0.30:104
chr19	54724430	rs1132606	TG	AA	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.795;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=10.359;JOINED;MLEAC=1;MLEAF=0.500;MQ=50.54;MQRankSum=-3.756;QD=0.33;ReadPosRankSum=-4.248;SOR=3.237;set=HC	GT:AD:AF:DP	0/1:87,7:0.07:94
chr19	54724457	.	TA	CG	3893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=35.265;JOINED;MLEAC=1;MLEAF=0.500;MQ=46.74;MQRankSum=4.412;QD=33.86;ReadPosRankSum=1.957;SOR=0.006;set=HC	GT:AD:AF:DP	0/1:19,96:0.83:115
chr19	54725798	rs75069054	G	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr19	54726162	rs56182917	T	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.155;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=40.687;MLEAC=1;MLEAF=0.500;MQ=54.87;MQRankSum=-5.099;QD=0.75;ReadPosRankSum=1.630;SOR=4.396;set=HC	GT:AD:AF:DP	0/1:58,8:0.12:66
chr19	54726226	rs75672336	T	C	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=7.690;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-7.740;QD=3.30;ReadPosRankSum=-0.293;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:129,22:0.15:151
chr19	54726241	rs77279742	C	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=5.499;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-8.575;QD=2.89;ReadPosRankSum=0.870;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:147,24:0.14:171
chr19	54726630	rs201587814	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=39.51;MQRankSum=0.730;QD=2.37;ReadPosRankSum=-1.100;SOR=2.804;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr19	54726665	rs373978777	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.33;MQRankSum=-0.635;QD=8.94;ReadPosRankSum=-0.164;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	54726701	rs200031404	G	GTCC	808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.12;MQRankSum=-2.483;QD=20.22;ReadPosRankSum=1.193;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr19	54726711	rs140063405	G	T	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.56;MQRankSum=-3.516;QD=15.93;ReadPosRankSum=1.256;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr19	54726816	rs80332440	A	T	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr19	54726833	rs149695852	T	C	2718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=52.35;MQRankSum=-3.079;QD=15.99;ReadPosRankSum=0.704;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:97,73:0.43:170
chr19	54726839	rs141453251	C	T	2957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=52.33;MQRankSum=-3.539;QD=17.50;ReadPosRankSum=-0.387;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:91,78:0.46:169
chr19	54726843	rs138124247	C	G	2949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=52.33;MQRankSum=-3.532;QD=17.45;ReadPosRankSum=-0.264;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:91,78:0.46:169
chr19	54726861	rs114813697	C	T	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:85,72:0.46:157
chr19	54726872	rs140228691	C	G	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,71:0.49:145
chr19	54742738	rs448461	G	C	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:64,83:0.56:147
chr19	54742900	rs117376661	C	G	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:176,155:0.47:331
chr19	54744104	rs11084326	T	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:77,44:0.36:121
chr19	54744209	rs8105096	TA	CG	4219.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;JOINED;set=Intersection	GT:AD:AF:DP	0/1:254,121:0.32:375
chr19	54744361	rs2361801	A	C	4721.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:196,221:0.53:417
chr19	54744387	rs71263238	C	T	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:160,180:0.53:340
chr19	54745507	rs61734496	TG	CA	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.548;JOINED;MLEAC=1;MLEAF=0.500;MQ=50.81;MQRankSum=-4.339;QD=4.21;ReadPosRankSum=-0.527;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr19	54746051	rs620207	A	C	5015.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:170,227:0.57:397
chr19	54746081	rs28445220	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=5.153;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-18.968;QD=0.46;ReadPosRankSum=1.823;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:343,54:0.14:397
chr19	54756302	rs415860	A	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	54778694	rs62134981	G	A	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	54781466	rs3859538	C	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	54781509	rs1808548	C	T	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	54781843	rs4022330	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	54782407	rs1128646	C	T	9842.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	54782420	rs11666104	G	A	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	54782704	rs7247451	G	C	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.20;QD=44.85;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	54782710	rs7247208	A	G	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.20;QD=42.88;SOR=4.080;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	54782724	rs7247538	G	A	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	54783375	rs373032	T	A	10466.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr19	54783923	rs366337	A	G	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	54786022	rs4112253	G	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	54797848	rs103294	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:115,46:0.29:161
chr19	54800222	rs368178	A	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=0.738;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	54800225	rs368177	A	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=0.738;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	54824177	rs1645785	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr19	54848507	rs55873636	T	C	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.100;QD=23.60;ReadPosRankSum=1.573;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:23,37:0.62:60
chr19	54848684	rs8105624	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr19	54848741	rs12985462	T	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr19	54848986	rs36068997	C	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr19	54849463	rs12976217	C	T	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr19	54849481	rs7256494	T	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:86,77:0.47:163
chr19	54849566	rs2241385	T	C	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr19	54849942	rs2241384	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:73,67:0.48:140
chr19	54867374	rs189639309	C	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	54867572	rs7257187	C	T	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.54;ReadPosRankSum=1.255;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:44,61:0.58:105
chr19	54871664	rs74463408	G	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr19	54876324	rs3745441	T	C	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	54881850	rs77507448	G	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:126,53:0.30:179
chr19	54940303	rs3745428	T	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr19	54962374	rs1035450	A	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,51:0.49:105
chr19	54962467	rs1035451	G	A	2193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-0.109;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:109,105:0.49:214
chr19	54962579	rs1035452	C	T	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-1.382;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:56,69:0.55:125
chr19	54963813	rs3841263	CCT	C	2387.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr19	54964019	rs963352	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr19	54965527	rs7247170	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	54965860	rs3813148	G	A	4817.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:187,230:0.55:417
chr19	54965889	rs3813147	G	C	3546.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:132,169:0.56:301
chr19	54965907	rs3813146	C	T	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:96,135:0.58:231
chr19	54966579	rs889147	C	G	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:82,127:0.61:209
chr19	54971229	rs3745437	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	54972719	rs7254603	A	T	6814.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:262,310:0.54:572
chr19	54973280	rs10423424	C	G	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:73,98:0.57:171
chr19	54973988	rs140013148	GCCT	G	5238.73	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:120,136:0.53:256
chr19	54974318	rs10406453	T	C	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:123,124:0.50:247
chr19	54974774	rs1981829	A	T	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	55009317	rs3865498	G	A	1680.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.993;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.770;MLEAC=2;MLEAF=1.000;MQ=45.86;MQRankSum=-2.156;QD=25.09;ReadPosRankSum=-1.423;SOR=2.340;set=HC	GT:AD:AF:DP	1/1:4,63:0.94:67
chr19	55014031	rs59342471	C	T	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr19	55014172	rs73070113	A	T	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:153,151:0.50:304
chr19	55019402	rs2277974	A	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	55020233	rs149731338	C	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr19	55021777	rs62131570	T	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-0.106;QD=7.68;ReadPosRankSum=-2.256;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr19	55043810	rs17606773	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	55044228	rs10553990	TTC	T	5299.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=41.08;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	55044241	.	CT	C	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.543;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:89,39:0.30:128
chr19	55044387	rs62131628	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	55045042	rs61739186	G	A	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	55048291	.	G	A	1589.77	.	AC=1;AF=0.500;AN=2;DP=200;set=Intersection	GT:AD:AF:DP	0/1:113,83:0.42:196
chr19	55049088	rs143540272	A	AAG	2154.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.80;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	55049104	.	G	GAAAGA	1823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=7.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=1.651;SOR=2.566;set=HC	GT:AD:AF:DP	0/1:41,69:0.63:110
chr19	55053911	rs7251007	G	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	55086106	rs45497601	C	G	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:58,78:0.57:136
chr19	55105706	rs117371487	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:114,66:0.37:180
chr19	55147445	rs1808512	G	C	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-2.409;QD=11.91;ReadPosRankSum=-0.613;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:27,41:0.60:68
chr19	55175596	rs3050015	T	TGTGGGAG	4344.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:78,109:0.58:187
chr19	55176262	rs731170	A	G	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:74,119:0.62:193
chr19	55176702	rs1631746	A	C	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr19	55178035	rs1749317	A	G	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:95,89:0.48:184
chr19	55246731	rs77241525	C	A	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:143,102:0.42:245
chr19	55246909	rs62132700	G	A	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=0.120;QD=19.94;ReadPosRankSum=-0.863;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	55246909	.	GCA	ACT	728	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=3;MGOF=2;MMLQ=28;MQ=58.08;NF=5;NR=16;PP=728;QD=37.2127559458;SC=TTCCTCACAGGCAGGATGGTC;SbPval=0.53;Source=Platypus;TC=40;TCF=9;TCR=31;TR=21;WE=55246919;WS=55246899;set=Platypus	GT:AD:AF:DP	1/0:19,21:0.53:40
chr19	55246911	rs62132701	A	T	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=0.120;QD=19.94;ReadPosRankSum=-0.884;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	55258778	rs34843749	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:62,27:0.30:89
chr19	55258808	rs35861855	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:85,46:0.35:131
chr19	55278630	rs2915996	G	C	4028.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:129,171:0.57:300
chr19	55281315	rs2304224	G	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr19	55284858	rs116929762	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:63,14:0.18:77
chr19	55294927	.	A	G	803.77	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr19	55315307	rs112963206	C	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.57;QD=23.95;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	55317456	rs149046820	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.64;QD=31.10;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	55317669	rs200231256	C	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	55329783	rs642893	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.39;QD=32.71;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	55329854	rs144994606	G	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.83;MQRankSum=0.570;QD=6.18;ReadPosRankSum=-0.301;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:38,21:0.36:59
chr19	55329901	rs643347	A	G	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.22;QD=26.63;SOR=2.862;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	55329922	rs1049150	A	T	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.62;QD=27.02;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	55333096	rs181336705	T	C	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.204;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=49.15;MQRankSum=-1.833;QD=9.57;ReadPosRankSum=0.619;SOR=1.383;set=HC	GT:AD:AF:DP	0/1:41,32:0.44:73
chr19	55333139	rs202189595	G	C	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.381;MLEAC=1;MLEAF=0.500;MQ=44.75;MQRankSum=-1.144;QD=9.71;ReadPosRankSum=0.060;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	55344170	rs78732506	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr19	55346373	rs4806583	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr19	55346409	rs4806584	T	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,49:0.58:85
chr19	55346424	rs4806585	C	A	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,52:0.59:88
chr19	55350963	.	T	TCCCGGAGCTCCTATGACATGTA	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.614;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-10.621;QD=3.44;ReadPosRankSum=-6.083;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:133,18:0.12:151
chr19	55386890	rs11084377	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	55386920	rs8112766	A	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.146;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr19	55396613	rs10402324	G	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	55396900	rs1865096	A	G	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	55399311	rs7258679	G	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.476;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-1.371;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	55418039	rs142746677	C	G	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:95,99:0.51:194
chr19	55438940	.	AAAAC	A	2003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=3.167;QD=15.41;ReadPosRankSum=1.854;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:73,57:0.44:130
chr19	55439166	rs269933	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	55439197	rs269934	A	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	55441769	rs269949	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	55441902	rs269950	T	C	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.299;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:52,47:0.47:99
chr19	55441995	rs269951	A	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr19	55445174	rs269957	T	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr19	55445775	rs104895521	G	GC	1333.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr19	55447572	rs775876	A	G	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	55447595	rs7359929	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	55447612	rs17699561	G	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	55447840	rs4806626	A	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr19	55451050	rs10418277	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr19	55451232	rs775882	C	T	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:132,97:0.42:229
chr19	55451797	rs775883	C	T	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:112,132:0.54:244
chr19	55451890	rs775884	T	C	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr19	55452194	rs11290760	CA	C	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.010;QD=9.73;ReadPosRankSum=-0.666;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,47:0.72:65
chr19	55453134	rs775886	G	A	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	55481669	rs269913	T	C	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	55485786	rs703468	G	A	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.079;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.58;ReadPosRankSum=-0.616;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	55485899	rs2217659	G	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:83,53:0.39:136
chr19	55488150	rs8102561	T	C	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.451;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.198;QD=11.31;ReadPosRankSum=0.128;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:50,71:0.59:121
chr19	55489349	rs775900	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr19	55493728	rs17699678	C	T	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:87,73:0.46:160
chr19	55495106	rs7254951	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr19	55501348	.	C	CAA	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-1.312;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	55501579	rs1654495	A	C	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr19	55501834	rs1654496	C	A	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	55501866	rs12973968	G	C	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:75,89:0.54:164
chr19	55505557	rs1654504	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr19	55511959	.	TTAAA	T	896.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=-1.209;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:24,33:0.58:57
chr19	55512011	rs16986158	A	C	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr19	55512137	rs12768	C	A	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:180,128:0.42:308
chr19	55512232	rs1043673	C	A	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	55512316	rs1043678	T	G	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	55512347	rs1043680	G	C	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	55525388	rs10417981	G	T	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	55525497	rs1671150	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	55525596	rs1654412	T	C	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	55525894	rs1671151	G	A	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	55526345	rs1671152	T	G	14164.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr19	55526359	rs1654413	A	T	14116.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	55526373	rs2304166	G	C	13296.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr19	55526932	rs140499950	TTACTC	T	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	55527081	rs2304167	C	T	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	55527189	rs1671153	G	T	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	55527276	rs1654484	T	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	55529836	rs1654415	C	T	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	55529933	rs1671192	A	G	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.45;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	55529933	.	ATTA	GTTA,GTTG	473	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.06;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=26;MQ=60.0;NF=42,19;NR=12,7;PP=473,472;QD=9.40317060273;SC=CGGTGAAGTGATTAAAAGCCT;SbPval=0.62;Source=Platypus;TC=55;TCF=42;TCR=13;TR=54,26;WE=55529944;WS=55529923;set=Platypus	GT:AF:DP	0/1:0.98:55
chr19	55529936	rs2304168	A	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.474;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-1.032;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr19	55530035	rs1654416	C	T	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	55536595	rs1613662	G	A	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	55538980	rs1654425	T	C	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	55539049	rs5030705	C	T	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr19	55539061	rs892089	A	G	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	55539072	rs892090	T	G	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	55559715	rs2305543	G	A	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:104,102:0.50:206
chr19	55559740	rs1059211	G	A	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:107,101:0.49:208
chr19	55570574	rs1654447	A	G	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	55574412	rs1654456	G	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	55574429	rs113253419	A	AGGCGTCC	1349.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	55574512	rs3816043	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=24.74;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	55587648	rs372742476	TG	T	1464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.284;QD=22.19;ReadPosRankSum=2.067;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:29,37:0.56:66
chr19	55587658	rs62124197	G	A	1681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.316;QD=22.42;ReadPosRankSum=2.316;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:34,41:0.55:75
chr19	55587668	rs61448344	C	T	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.198;QD=20.43;ReadPosRankSum=0.485;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:38,55:0.59:93
chr19	55587822	rs12609976	G	A	3715.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:135,178:0.57:313
chr19	55589591	.	T	C	310	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=5;HapScore=2;MGOF=14;MMLQ=28;MQ=59.34;NF=6;NR=15;PP=310;QD=16.417676788;SC=GGGCTGGGGGTCTGGACTCCT;SbPval=0.76;Source=Platypus;TC=52;TCF=18;TCR=34;TR=21;WE=55589599;WS=55589581;set=Platypus	GT:AD:AF:DP	1/0:31,21:0.40:52
chr19	55589628	.	T	C	342	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=5;HapScore=2;MGOF=27;MMLQ=28;MQ=56.43;NF=1;NR=8;PP=342;QD=41.8634680608;SC=GTGCTGGGGGTCTGGACTCCT;SbPval=0.91;Source=Platypus;TC=24;TCF=6;TCR=18;TR=9;WE=55589659;WS=55589618;set=Platypus	GT:AD:AF:DP	1/0:15,9:0.38:24
chr19	55591392	rs56378581	C	T	3079.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:110,139:0.56:249
chr19	55593417	rs17700138	C	T	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:183,223:0.55:406
chr19	55594996	rs1628576	C	G	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:133,129:0.49:262
chr19	55598724	rs1054940	A	G	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	55603388	rs10410929	T	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	55605704	rs3803899	A	C	2379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.242;QD=21.06;ReadPosRankSum=0.739;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:48,65:0.58:113
chr19	55605704	.	AC	CT	1954	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=7;HapScore=2;MGOF=14;MMLQ=28;MQ=59.23;NF=28;NR=26;PP=1954;QD=37.175331016;SC=ACCCCAGCCCACCCCACACCT;SbPval=0.31;Source=Platypus;TC=106;TCF=61;TCR=45;TR=54;WE=55605713;WS=55605694;set=Platypus	GT:AD:AF:DP	0/1:52,54:0.51:106
chr19	55605705	rs3803900	C	T	2379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.227;QD=20.88;ReadPosRankSum=1.156;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:49,65:0.57:114
chr19	55610066	rs55805974	CG	C	3204.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	55623806	rs604216	C	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=1.708;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	55624223	rs56367991	G	A	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr19	55644325	rs890868	A	C	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	55652475	rs148264676	C	T	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,93:0.49:189
chr19	55658088	rs11669534	G	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=0.710;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr19	55660499	rs28362592	A	G	4580.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:249,218:0.47:467
chr19	55665410	rs3729841	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	55665584	rs7252610	A	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	55668397	rs3729837	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr19	55668509	rs3729836	A	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,65:0.50:130
chr19	55668722	rs113899745	C	CCTGT	3093.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr19	55668805	rs11671293	T	C	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:154,121:0.44:275
chr19	55668819	rs11667847	A	G	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:167,132:0.44:299
chr19	55670825	rs28377509	T	C	4165.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:180,199:0.53:379
chr19	55671090	rs67301370	TG	T	1226.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr19	55671134	.	GAGGAGGGGCTGGGGGCCTGGACCCCTGGGTCTAAGCA	G	1588.73	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr19	55671337	rs890872	C	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	55671374	rs891187	C	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.749;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.732;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr19	55672470	rs2365725	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr19	55672569	rs7260371	G	A	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=1.197;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:64,64:0.50:128
chr19	55672784	rs7260320	A	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=0.398;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	55673245	rs3848617	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr19	55673746	rs7249414	C	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr19	55677523	rs3848619	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr19	55690751	rs11672000	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr19	55693244	rs2288419	T	C	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,68:0.49:140
chr19	55693570	rs11669300	C	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr19	55697236	rs61735060	G	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:56,62:0.53:118
chr19	55699454	rs890870	T	C	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=26.14;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	55699575	rs3803905	T	C	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr19	55699646	rs3803904	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr19	55702910	rs2288523	C	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,69:0.54:128
chr19	55703237	rs11394932	C	CG	7403.73	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:236,251:0.52:487
chr19	55703326	rs10545294	ACCT	A	6285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=19.16;ReadPosRankSum=1.892;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:164,164:0.50:328
chr19	55703438	rs8103223	G	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr19	55708557	rs2288521	A	G	3620.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:184,170:0.48:354
chr19	55709928	rs2288519	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr19	55716800	rs2288516	A	G	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	55738425	rs3745919	G	A	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	55738634	rs4644955	T	C	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	55738746	rs4374298	G	A	1915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-1.261;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:116,101:0.47:217
chr19	55739515	rs4255895	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	55739605	rs4606850	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr19	55739689	rs10413828	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:72,74:0.51:146
chr19	55739813	rs10419308	G	A	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:102,65:0.39:167
chr19	55741961	rs28678477	G	C	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.192;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:55,41:0.43:96
chr19	55751123	rs8104509	G	A	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	55756980	rs3745920	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr19	55758628	rs7258327	C	T	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	55776823	rs67351527	G	A	2571.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:148,130:0.47:278
chr19	55777143	rs62126349	T	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,51:0.40:127
chr19	55785715	rs11427517	A	AC	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=-0.000;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	55790886	rs10701478	A	AGCCGCCGCC	2231.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr19	55791091	rs62126354	C	T	1780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-2.610;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:61,82:0.57:143
chr19	55800789	rs62126358	C	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr19	55814881	rs1551562	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:77,43:0.36:120
chr19	55815894	rs1172820	T	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr19	55816678	rs1172821	C	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr19	55824332	rs7246479	T	G	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:97,74:0.43:171
chr19	55831576	rs897794	AA	CC	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	0/1:88,73:0.45:161
chr19	55831589	rs897796	A	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:86,59:0.41:145
chr19	55831723	rs897797	T	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr19	55832427	rs10412726	T	G	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:169,117:0.41:286
chr19	55853497	rs11879143	T	C	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:70,83:0.54:153
chr19	55854242	rs10416488	A	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:96,91:0.49:187
chr19	55854313	rs2384685	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr19	55856083	rs11084395	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.026;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:53,48:0.48:101
chr19	55856211	rs10405231	C	T	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr19	55865350	rs12461665	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr19	55866336	.	G	GC	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.712;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr19	55866468	rs12971931	G	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr19	55869879	rs67168196	GGCTCCTTCATCTCGCCCCATGGCT	G	10642.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	55870104	rs12974819	G	C	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	55870289	rs12974907	C	T	11203.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr19	55870351	rs12976922	T	C	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr19	55870478	rs79366553	C	T	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:144,161:0.53:305
chr19	55870600	rs12460416	C	G	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	55870835	rs113307911	A	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr19	55871019	rs12609732	A	G	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	55872191	rs897799	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=1.717;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:85,58:0.41:143
chr19	55872397	rs2124918	A	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	55872531	rs11084397	C	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:90,40:0.31:130
chr19	55872566	rs2124919	A	G	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	55872591	rs2124920	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr19	55872864	rs11673515	G	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr19	55872955	rs11673554	G	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	55873642	rs4252574	C	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	55879872	rs1126757	C	T	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:74,84:0.53:158
chr19	55888537	rs370170404	G	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr19	55889451	rs77912983	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:96,66:0.41:162
chr19	55895588	rs1870074	G	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	55903158	rs10653185	C	CAG	1486.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	55913286	rs11393810	T	TC	1088.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	55914295	rs112400318	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.142;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr19	55914374	rs11672075	C	T	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:121,84:0.41:205
chr19	55964546	rs3214450	G	GC	576.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	55966346	rs2277959	C	T	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	55993260	rs34864744	A	G	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:148,108:0.42:256
chr19	55993876	rs10423355	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr19	55995710	rs73057174	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr19	55995764	.	G	GCC	485.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr19	55995841	rs111286193	C	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	55996939	rs3745450	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	55998262	rs77664073	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-1.955;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr19	55999993	rs4405662	A	G	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-0.165;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:92,91:0.50:183
chr19	56000240	.	T	TGTGGGAGCACCAAAGCCGTGGTCCCCAGCCCTGACTTCAGGGGCCAGACATCTGCAGCCCCACCCGCCTCAGAGACCTGCGTCTCAGCCAGCCCCTCTGTCCAGAGTCCTTCCTCCCAGCAGTGGGGGTTTCTGGTTCAGAGGTGTGAGGACC	992.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=18.388;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=-0.550;QD=41.36;ReadPosRankSum=2.307;SOR=4.289;set=HC	GT:AD:AF:DP	1/1:7,17:0.71:24
chr19	56000428	.	C	G	569.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-0.318;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	56000429	rs57080356	GCC	G	560.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=-0.671;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	56001419	.	CG	C	82	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=7;HapScore=2;MGOF=9;MMLQ=28;MQ=58.63;NF=1;NR=2;PP=82;QD=33.0;SC=CTGCCCCCCCCGAGGGGAGAG;SbPval=0.63;Source=Platypus;TC=14;TCF=4;TCR=10;TR=3;WE=56001427;WS=56001409;set=Platypus	GT:AD:AF:DP	1/0:11,3:0.21:14
chr19	56001665	rs114976626	C	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:78,82:0.51:160
chr19	56004901	rs889090	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	56004932	rs2902752	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	56005289	rs4801309	T	C	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:68,75:0.52:143
chr19	56005354	rs3044271	C	CGGG	150.82	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	56009191	rs34794462	GT	G	562.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr19	56009215	rs7254234	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	56009741	rs4801701	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	56011091	rs4801314	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr19	56011460	rs4801713	C	T	5715.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:393,271:0.41:664
chr19	56011573	rs61747393	C	T	7734.77	.	AC=1;AF=0.500;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	0/1:466,379:0.45:845
chr19	56011915	rs61107130	G	A	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:92,139:0.60:231
chr19	56012381	rs11084400	T	C	2136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.314;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:66,98:0.60:164
chr19	56015448	rs7257434	C	T	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,65:0.52:125
chr19	56015613	rs10421885	A	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr19	56024519	rs671542	T	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	56024563	rs514574	G	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	56024599	rs671152	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	56029188	rs77400028	C	G	5633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.665;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=38.942;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=0.201;QD=20.19;ReadPosRankSum=3.190;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:133,146:0.52:279
chr19	56029191	rs76172483	C	T	5771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.527;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=30.558;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.693;QD=20.39;ReadPosRankSum=3.427;SOR=0.152;set=HC	GT:AD:AF:DP	0/1:135,148:0.52:283
chr19	56029201	rs74585733	C	A	5772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=26.832;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=1.116;QD=20.18;ReadPosRankSum=2.854;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:130,156:0.55:286
chr19	56029465	rs4801331	G	A	10997.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.06;QD=31.24;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	56029519	rs111456686	C	T	6635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.089;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=12.769;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-3.296;QD=25.04;ReadPosRankSum=2.860;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:94,171:0.65:265
chr19	56029523	rs113619253	C	T	6646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=22.886;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-3.401;QD=26.59;ReadPosRankSum=2.238;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:84,166:0.66:250
chr19	56029543	rs114559746	C	T	5865.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:88,143:0.62:231
chr19	56029552	.	G	GACTGCTGACCCCACCACT	5743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=4.826;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-5.124;QD=22.97;ReadPosRankSum=4.543;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:117,133:0.53:250
chr19	56029556	.	C	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=1;MGOF=47;MMLQ=21;MQ=55.78;NF=52;NR=71;PP=2962;QD=20;SC=CACCATGACTCCTGACCCCAC;SbPval=0.19;Source=Platypus;TC=365;TCF=128;TCR=237;TR=123;WE=56029584;WS=56029531;set=Platypus	GT:AD:AF:DP	0/1:242,123:0.34:365
chr19	56029559	.	GACCCCACCACGACCCCTT	GATCCCACCACAACCCCTCACCCCACCACGACCCCTT,G	4385.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=260;set=Intersection	GT:AF:DP	0/1:0.37:255
chr19	56029616	rs150781976	C	CCCA	33738.73	.	AC=2;AF=1.00;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	1/1:0,743:1.00:743
chr19	56040962	rs71830799	CAGAGAGG	C	1402.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr19	56041046	rs59876483	GC	AA	11076.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	56041255	rs620251	C	G	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	56047448	rs310453	A	G	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-1.720;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:143,72:0.33:215
chr19	56051946	rs73061113	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr19	56052337	rs55643341	A	AC	24955.73	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:0,751:1.00:751
chr19	56052770	rs654439	C	T	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:94,92:0.49:186
chr19	56055436	rs694398	A	G	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=6.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-1.303;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:73,73:0.50:146
chr19	56056184	rs491639	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr19	56056257	rs56258384	G	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	56089353	rs2292812	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=0.519;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:64,30:0.32:94
chr19	56089908	rs113850871	C	CCCG	1762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.090;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:97,50:0.34:147
chr19	56104136	rs7247236	T	C	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=1.350;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:60,33:0.35:93
chr19	56104524	rs10403432	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr19	56104560	rs10403462	C	G	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=2.155;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr19	56114045	rs1077806	C	T	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:110,118:0.52:228
chr19	56114237	rs310459	G	A	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	56128243	rs73058308	C	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	56134038	rs908668	C	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr19	56136059	rs57314044	G	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr19	56153868	rs310475	G	A	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:94,144:0.61:238
chr19	56156447	rs11084406	A	G	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:159,140:0.47:299
chr19	56160399	rs7246799	T	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	56162776	rs2287791	C	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	56162881	rs519856	C	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.818;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr19	56163704	rs73062531	C	T	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:100,72:0.42:172
chr19	56170771	rs537728	G	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	56171778	rs507498	A	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr19	56175149	rs310444	G	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	56180732	rs681804	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	56180968	rs617073	C	T	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	56185250	rs664684	G	A	6184.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	56205996	.	C	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.621;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	56220504	rs73062405	T	C	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.430;SOR=2.564;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	56222998	rs28527338	C	T	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr19	56223486	rs59900917	G	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr19	56235446	.	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	0/1:60,70:0.54:130
chr19	56241265	rs193384	A	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	56249445	rs755804	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr19	56273136	rs59333538	T	C	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	56273293	rs2019946	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=34.461;MLEAC=1;MLEAF=0.500;MQ=39.96;MQRankSum=2.361;QD=4.85;ReadPosRankSum=1.151;SOR=2.606;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr19	56273868	rs200686834	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=8.982;MLEAC=1;MLEAF=0.500;MQ=47.15;MQRankSum=-4.780;QD=6.09;ReadPosRankSum=-1.323;SOR=0.102;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr19	56273902	rs2045865	C	A	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.167;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=9.676;MLEAC=1;MLEAF=0.500;MQ=47.55;MQRankSum=-6.554;QD=13.54;ReadPosRankSum=-1.237;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:76,44:0.37:120
chr19	56273902	.	CAA	AAC	2106	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=25;MQ=40.63;NF=42;NR=23;PP=2106;QD=33.2225826902;SC=TGTTTGCAGTCAAAGGGCAGA;SbPval=0.25;Source=Platypus;TC=179;TCF=127;TCR=52;TR=65;WE=56273912;WS=56273892;set=Platypus	GT:AD:AF:DP	1/0:114,65:0.36:179
chr19	56273904	rs199794484	A	C	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.428;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=11.477;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-6.576;QD=12.79;ReadPosRankSum=-0.950;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:81,46:0.36:127
chr19	56274086	rs138079370	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.155;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=15.509;MLEAC=1;MLEAF=0.500;MQ=48.67;MQRankSum=-1.465;QD=1.69;ReadPosRankSum=-2.028;SOR=1.862;set=HC	GT:AD:AF:DP	0/1:119,25:0.17:144
chr19	56274424	rs150161449	C	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.307;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=49.59;MQRankSum=-7.156;QD=0.70;ReadPosRankSum=1.243;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:430,72:0.14:502
chr19	56274460	rs200071964	A	G	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.68;MQRankSum=-2.540;QD=3.90;ReadPosRankSum=1.830;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:329,120:0.27:449
chr19	56283297	rs199759246	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.383;MLEAC=1;MLEAF=0.500;MQ=40.71;MQRankSum=-0.733;QD=2.39;ReadPosRankSum=0.531;SOR=2.522;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr19	56283906	rs201940197	C	A	1993.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.228;MLEAC=2;MLEAF=1.000;MQ=47.08;MQRankSum=2.486;QD=44.31;ReadPosRankSum=-0.804;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr19	56283908	rs200568419	A	C	1993.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=47.26;MQRankSum=2.198;QD=39.88;ReadPosRankSum=-0.802;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:1,49:0.98:50
chr19	56284090	rs202217602	G	A	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=11.592;MLEAC=1;MLEAF=0.500;MQ=48.19;MQRankSum=-1.119;QD=7.79;ReadPosRankSum=0.506;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:55,33:0.38:88
chr19	56284396	rs141642534	A	T	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.74;QD=27.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	56284428	rs150473927	C	A	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.420;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-5.584;QD=5.54;ReadPosRankSum=-0.465;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr19	56284457	rs78244980	G	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.836;MLEAC=1;MLEAF=0.500;MQ=47.03;MQRankSum=-6.565;QD=6.95;ReadPosRankSum=-1.056;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:65,42:0.39:107
chr19	56284507	rs115250131	T	G	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=47.52;MQRankSum=-7.534;QD=16.44;ReadPosRankSum=1.395;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:80,62:0.44:142
chr19	56284511	rs116745378	C	G	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=47.52;MQRankSum=-7.534;QD=16.44;ReadPosRankSum=1.856;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:80,62:0.44:142
chr19	56284529	rs199519773	C	A	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-7.969;QD=17.06;ReadPosRankSum=2.708;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:62,58:0.48:120
chr19	56284535	rs144990325	A	G	2022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.25;MQRankSum=-7.841;QD=19.83;ReadPosRankSum=3.516;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:52,50:0.49:102
chr19	56284582	rs201888659	A	T	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.15;MQRankSum=-0.461;QD=33.53;ReadPosRankSum=2.392;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr19	56284587	rs200252021	C	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.15;QD=41.08;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr19	56284614	rs199744839	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.18;QD=27.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	56288941	rs17708417	C	T	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:204,126:0.38:330
chr19	56289284	rs56312799	T	TC	108.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr19	56297249	rs59238812	C	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:62,37:0.37:99
chr19	56307583	rs2616940	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	56307723	rs10422937	T	C	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	56321414	rs299163	C	A	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:192,177:0.48:369
chr19	56369593	rs421810	T	C	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:121,92:0.43:213
chr19	56372705	rs4801635	C	T	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr19	56388262	rs16986758	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr19	56393051	rs302457	T	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr19	56410340	rs302828	T	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	56413583	rs302835	A	G	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	56416288	rs76515504	T	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr19	56419263	rs17711239	T	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr19	56421775	rs11670284	C	T	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	56421826	rs12982016	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	56421861	rs12982043	C	T	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	56422976	rs1436079	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	56423033	rs4801643	C	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	56423074	rs977070	C	G	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	56423254	rs304002	G	A	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	56423668	rs304001	G	A	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	56423692	rs304000	C	T	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	56423728	rs303999	A	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	56423893	rs303998	G	A	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	56424443	rs303997	T	C	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	56459302	rs77942970	A	C	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:95,90:0.49:185
chr19	56459342	rs306507	C	T	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:135,126:0.48:261
chr19	56459614	rs306506	G	C	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=14.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-1.102;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:96,89:0.48:185
chr19	56459703	rs1436077	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,25:0.31:81
chr19	56464058	rs306501	C	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr19	56464152	rs73613404	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	56473460	rs6509975	T	C	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=5.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.958;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:73,81:0.53:154
chr19	56477687	rs306497	A	G	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.935;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:43,60:0.58:103
chr19	56490778	rs306475	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr19	56490943	rs11084419	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=1.026;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:26,32:0.55:58
chr19	56499279	rs306457	G	C	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.083;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.734;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:66,82:0.55:148
chr19	56499345	rs306455	A	G	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr19	56510965	rs62123572	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr19	56511082	rs35427984	C	G	2670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=0.408;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:68,70:0.51:138
chr19	56511090	rs76756220	T	C	2698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.70;ReadPosRankSum=-1.891;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:66,71:0.52:137
chr19	56515334	rs1560691	C	T	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:80,87:0.52:167
chr19	56520355	rs76148349	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr19	56530664	rs306428	A	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:119,99:0.45:218
chr19	56538203	rs3103612	C	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	56549510	rs16986899	T	C	3940.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:89,108:0.55:197
chr19	56549532	rs306447	A	G	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:102,107:0.51:209
chr19	56552230	rs2569425	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	56561749	rs2574762	A	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	56564972	rs60674753	G	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr19	56565127	rs392801	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr19	56565164	rs3103057	G	A	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	56569629	rs12462795	C	G	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr19	56572832	rs10409555	G	A	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr19	56572875	rs36118060	G	A	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.332;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:71,98:0.58:169
chr19	56599405	rs4077285	C	G	191.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	56599437	rs5828672	CTCG	C	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	56688669	rs4801681	A	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	56691912	rs274171	G	C	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	56693620	rs3745833	C	G	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	56693643	rs274174	T	C	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	56718497	rs200501867	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:90,127:0.59:217
chr19	56719405	rs12979551	A	C	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	56719822	rs1865101	G	T	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	56719853	rs1865102	C	A	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.41;QD=27.84;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	56735015	rs4801692	T	C	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:56,78:0.58:134
chr19	56758980	rs10405301	T	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr19	56888450	rs2304124	A	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:80,70:0.47:150
chr19	56901293	rs6509995	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	56904509	rs11439847	T	TA	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=5.00;ReadPosRankSum=1.359;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:56,37:0.40:93
chr19	56918560	rs4801159	T	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	56918574	rs2288862	T	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	56918598	rs2288863	T	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr19	56935527	rs3810340	A	G	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:126,135:0.52:261
chr19	56953585	rs3760849	T	C	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:152,112:0.42:264
chr19	56953863	rs8107758	T	C	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	56953963	rs35914474	G	A	3172.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:177,149:0.46:326
chr19	56969332	rs3745826	A	G	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	56973848	rs35027158	T	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr19	57006415	rs17207481	A	G	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:101,98:0.49:199
chr19	57062073	rs379214	T	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	57065189	rs145011	T	C	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	57133876	rs139192184	G	A	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:308,257:0.45:565
chr19	57175578	rs12610410	C	T	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:186,143:0.43:329
chr19	57184136	rs10409943	C	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	57184361	.	CT	C,CTT	919.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.43;QD=18.77;SOR=1.473;set=HC	GT:AD:AF:DP	1/2:0,29,20:0.59,0.41:49
chr19	57293394	rs2286751	A	G	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	57327503	rs33931963	A	G	3228.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:135,152:0.53:287
chr19	57335179	rs1860566	T	C	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	57642782	rs9973206	C	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	57654217	rs10426157	T	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.823;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	57703258	rs77125234	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr19	57742472	rs11084490	G	C	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=0.120;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:101,75:0.43:176
chr19	57742489	rs58264281	C	T	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:124,80:0.39:204
chr19	57742493	rs142269286	AGGACGAGCAGGATT	A	2890.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:144,80:0.36:224
chr19	57742703	rs758097	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	57743039	rs758098	T	C	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.305;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:34,48:0.59:82
chr19	57743067	rs2361127	C	G	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.773;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:75,92:0.55:167
chr19	57743334	rs758099	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	57743766	rs2074859	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr19	57760289	rs73629343	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	57802042	rs117592173	C	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr19	57832089	rs4801461	G	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.876;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	57832292	rs66494727	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr19	57839150	rs8100491	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr19	57839567	rs1968090	T	A	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:145,120:0.45:265
chr19	57839690	rs35238720	A	T	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;MQ=57.18;set=Intersection	GT:AD:AF:DP	0/1:131,130:0.50:261
chr19	57863149	rs34172522	T	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr19	57865082	rs862703	T	C	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	57868336	rs862709	A	G	9073.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	57890000	rs2361119	C	T	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	57901422	rs75599624	G	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:110,63:0.36:173
chr19	57909872	rs4801478	G	A	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	57922664	rs4801480	T	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	57929213	.	C	CAA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.62;ReadPosRankSum=0.847;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	57931303	rs2014827	C	A	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:87,69:0.44:156
chr19	57932027	rs2158009	C	T	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:127,92:0.42:219
chr19	57954628	rs7249430	G	A	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:86,95:0.52:181
chr19	57956828	rs7246856	T	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr19	57967049	rs61744949	G	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:63,55:0.47:118
chr19	57967133	rs28649880	G	A	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:89,89:0.50:178
chr19	57983457	rs10153521	A	G	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr19	57984918	rs2074058	A	G	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:145,86:0.37:231
chr19	57985460	rs2074059	T	A	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.320;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:87,73:0.46:160
chr19	57985566	rs2074060	G	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,52:0.43:121
chr19	57986184	rs2285607	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:110,72:0.40:182
chr19	57987905	rs2067055	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=0.368;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	57988666	rs34678661	A	AGCC	2311.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chr19	57999182	rs8113039	A	G	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:121,101:0.45:222
chr19	58001512	rs11672136	T	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr19	58002819	rs6510085	T	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:96,59:0.38:155
chr19	58003141	rs71333245	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.172;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=28.771;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-6.106;QD=2.08;ReadPosRankSum=-2.946;SOR=2.817;set=HC	GT:AD:AF:DP	0/1:115,23:0.17:138
chr19	58003488	rs2074070	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr19	58003580	rs2074071	A	G	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:126,113:0.47:239
chr19	58003613	rs2074072	C	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:125,108:0.46:233
chr19	58003728	rs2074073	G	A	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:119,114:0.49:233
chr19	58003873	rs2074074	C	T	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr19	58004158	rs2074075	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr19	58004346	rs2074076	G	C	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr19	58004931	rs2074077	A	G	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:197,140:0.42:337
chr19	58011421	rs12463137	G	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr19	58016193	rs4801227	A	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.033;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=6.935;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-6.744;QD=2.05;ReadPosRankSum=-2.203;SOR=1.794;set=HC	GT:AD:AF:DP	0/1:81,11:0.12:92
chr19	58016196	rs4801228	T	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=7.002;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-7.311;QD=2.12;ReadPosRankSum=-2.483;SOR=1.786;set=HC	GT:AD:AF:DP	0/1:78,11:0.12:89
chr19	58016474	rs150811873	T	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=19.519;MLEAC=1;MLEAF=0.500;MQ=45.56;MQRankSum=-1.470;QD=1.10;ReadPosRankSum=-2.729;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:125,23:0.16:148
chr19	58018848	rs2066936	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chr19	58038964	rs12461014	T	A	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	58050006	rs151110967	T	C	3051.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:126,133:0.51:259
chr19	58058536	rs1548476	A	G	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	58058739	rs10410631	T	C	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,65:0.50:129
chr19	58089521	rs886265	G	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr19	58095678	rs11880137	C	G	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr19	58100092	rs45569842	T	C	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:75,100:0.57:175
chr19	58115803	rs11881999	C	A	4869.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:196,231:0.54:427
chr19	58116929	rs9676996	A	C	197.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr19	58117083	rs9677004	A	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr19	58117223	rs2360543	T	A	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr19	58117399	rs11883343	C	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,55:0.66:83
chr19	58118715	rs10715037	CT	C	703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.338;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.870;QD=6.52;ReadPosRankSum=-0.378;SOR=1.419;set=HC	GT:AD:AF:DP	0/1:46,62:0.57:108
chr19	58123695	rs3761060	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr19	58125644	rs2269818	A	G	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:83,109:0.57:192
chr19	58131623	rs10413455	G	A	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:85,87:0.51:172
chr19	58151338	rs34418076	TG	T	1521.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr19	58214147	rs34282745	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:80,79:0.50:159
chr19	58231807	rs2239986	A	G	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:105,84:0.44:189
chr19	58262454	rs11419013	C	CT	976.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	58291228	rs2158013	A	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:85,74:0.47:159
chr19	58301946	rs9789253	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr19	58326001	rs2303817	A	G	5834.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:189,265:0.58:454
chr19	58341843	rs12983990	A	G	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:92,95:0.51:187
chr19	58342011	rs6510107	A	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr19	58352522	rs12981244	G	A	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:461,238:0.34:699
chr19	58352806	rs35313547	T	C	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:102,100:0.50:202
chr19	58353003	rs34871842	G	A	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:125,137:0.52:262
chr19	58419180	rs73068597	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	58419841	rs10414704	G	T	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	58419874	rs10415951	T	C	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	58420152	rs17845779	C	A	13739.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.29;QD=44.32;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr19	58420162	rs10416584	T	C	14952.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.04;QD=46.01;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr19	58420167	rs17852300	T	C	14863.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.88;QD=44.50;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	58420699	rs3745133	C	A	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	58421128	rs201944488	C	T	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.06;QD=25.77;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	58446618	rs62126278	G	A	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	58453342	rs959231	T	C	8781.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr19	58455381	rs257652	C	T	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr19	58485439	rs257676	C	T	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	58513593	.	C	T	3108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.965;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:131,148:0.53:279
chr19	58549366	rs159870	C	G	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	58549593	rs2241406	C	G	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	58570697	rs7256947	G	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.78;ReadPosRankSum=0.223;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	58570794	rs8110363	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	58571615	rs151015554	GGTGCCCGGCCTCTACTC	G	1456.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr19	58572979	rs1469087	G	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr19	58578578	rs2229375	C	T	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:177,178:0.50:355
chr19	58579923	rs2229379	A	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr19	58598670	rs2287837	C	T	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:104,76:0.42:180
chr19	58598784	rs2260914	A	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	58600048	rs1529329	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr19	58601221	rs2547354	T	C	3672.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:142,176:0.55:318
chr19	58629830	rs8108978	A	T	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	58629878	rs8109275	G	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	58718269	rs7256349	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:102,57:0.36:159
chr19	58718360	rs59557917	A	AG	2428.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	58757870	rs12972443	G	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	58774071	rs260462	A	G	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	58790359	rs11666156	C	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	58790675	rs437229	T	C	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	58790713	rs374431	G	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	58791213	rs260500	C	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	58791251	rs368590489	TTTA	T	213.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-0.230;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	58791252	rs66668551	TTA	T	91.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.215;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	58797344	rs400733	A	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	58797583	rs59553565	C	CT	4463.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	58850206	rs62116373	G	A	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:132,148:0.53:280
chr19	58858231	rs3214663	GC	G	3005.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	58858614	rs11345647	AG	A	2711.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	58858676	rs1265957	A	G	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=25.37;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	58859055	rs144085420	C	CCCCAGGCCGCG	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	58859066	rs1265959	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	58863161	rs10164322	C	CT	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.599;QD=8.12;ReadPosRankSum=-0.243;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,31:0.67:46
chr19	58864479	rs893184	T	C	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	58864867	rs2375470	A	G	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	58864879	rs3833872	T	TG	2388.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	58868480	rs12609654	G	T	3668.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:234,183:0.44:417
chr19	58869515	rs6146577	GTCCCC	G	3270.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:115,87:0.43:202
chr19	58870003	rs10692126	T	TGAG	2019.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr19	58870087	rs11332731	TG	T	6313.73	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:219,216:0.50:435
chr19	58871130	rs6510138	C	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	58879660	rs61746138	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr19	58879701	rs61746129	C	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr19	58879965	rs7255489	A	G	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.58;SOR=1.317;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	58879976	rs7255596	C	T	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	58880016	rs7255916	G	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr19	58880184	rs7256809	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr19	58880242	rs7256940	T	C	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.493;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:60,51:0.46:111
chr19	58880761	rs62116383	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr19	58880848	rs72629171	G	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	58898436	rs731835	T	C	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	58904396	rs10853905	G	A	3877.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:133,173:0.57:306
chr19	58907443	rs12611212	C	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	58908150	rs13343526	C	G	5250.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr19	58945962	rs9941466	C	T	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	58982044	rs28444973	C	T	4225.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:163,189:0.54:352
chr19	58982384	rs10418774	A	G	5725.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	59010593	rs4801274	A	G	9678.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr19	59010819	rs2278497	G	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr19	59025685	rs4801602	A	C	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	59059729	rs2305120	G	A	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:84,129:0.61:213
chr20	76962	rs6111385	T	C	15963.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr20	126310	rs11467417	ACC	A	23659.73	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr20	138004	rs6055356	G	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	139362	rs6055460	G	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	139745	rs4142304	T	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	168558	rs74181522	A	G	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	168728	rs4813043	T	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	168781	rs35089290	G	T	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr20	207889	rs2298149	G	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	208168	rs6110460	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	209914	.	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=1.121;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr20	210061	rs13045643	G	A	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	238435	rs66489228	CTGGTCT	C	7075.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr20	238507	rs373225	A	C	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	238530	rs412143	T	G	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=41.72;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	238540	rs416360	C	T	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=45.64;SOR=1.758;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	239664	rs420525	T	C	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	239688	rs399083	G	A	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	239697	rs399094	G	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.53;SOR=1.758;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	252084	rs370609971	TAC	T	58.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr20	259818	rs6035541	G	A	5447.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	271135	rs3215551	G	GC	2130.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	271204	.	ATT	A	523.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.848;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:83,36:0.30:119
chr20	278515	rs2223665	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	278687	rs5839847	CCGG	C	2680.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	279483	rs1046560	T	C	8277.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr20	333871	rs34012633	G	A	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	368905	rs2295490	A	G	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	371972	rs6051637	T	C	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	377226	rs6115830	C	T	7654.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr20	389456	rs3746792	C	T	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr20	391170	rs7059	C	T	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	397928	rs6115906	C	T	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	400504	rs67470622	AGTGACCCTGCACCTGGCT	A	1279.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	402710	rs2057251	A	G	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	402921	rs6051905	C	G	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	409870	.	A	AT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.054;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr20	425606	rs2273465	C	A	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	428767	rs6139203	A	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	480602	.	C	CA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.166;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr20	590456	rs282164	A	G	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	590542	rs2754502	CG	GC	7769.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	590900	rs183989	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	656407	rs146589074	T	TGGC	1187.86	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:2,30:0.94:32
chr20	742237	rs3746801	G	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	742237	.	GGT	AGC	1975	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=33;NR=4;PP=1975;QD=54.8234560774;SC=TTCCCGGGAGGGTCCCACAGA;SbPval=0.65;Source=Platypus;TC=41;TCF=36;TCR=5;TR=37;WE=742247;WS=742235;set=Platypus	GT:AD:AF:DP	1/1:4,37:0.90:41
chr20	742239	rs6054589	T	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=3.865;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	744415	rs3746804	G	A	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	745963	rs3746807	G	A	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	746197	rs35655964	G	C	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr20	746423	rs11467076	GTATCTGCCC	G	7500.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr20	825678	rs538094	T	C	12306.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr20	1099329	rs2072962	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	1099523	rs1803415	T	G	10203.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr20	1099666	rs2072961	G	C	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	1108262	rs6040024	C	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	1115529	rs4813939	A	G	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	1183991	rs79308981	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	1214814	rs203534	A	C	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	1221171	rs970084	G	A	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	1286711	rs4813082	T	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	1292964	rs4814110	T	C	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	1293046	rs1048621	G	A	11646.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr20	1293247	rs2273959	C	T	15314.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr20	1298794	rs6078610	G	A	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	1350709	rs8392	T	C	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	1356261	rs6074549	G	C	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr20	1435905	rs6042377	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	1459060	rs6042507	T	G	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	1520883	rs2256520	T	C	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	1532595	rs2249317	T	C	9377.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr20	1538379	rs73604175	C	T	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	1546742	rs2243602	T	A	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	1546911	rs2243603	C	G	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	1551485	rs2254458	C	T	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	1552430	rs2253427	T	C	12369.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr20	2290333	rs214803	C	A	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr20	2290532	rs214804	T	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	2290547	rs214805	C	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	2315929	rs2076406	C	T	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	2321105	rs214830	G	C	6439.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr20	2321363	rs214831	A	G	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	2321665	rs214832	T	C	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	2361684	rs2422753	C	T	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	2375262	rs2076405	A	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	2377204	rs16984872	C	T	8301.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr20	2380396	rs2076404	G	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	2413126	rs6036467	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	2442273	rs6049216	C	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	2451503	rs4815262	G	A	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr20	2464112	rs61740142	T	C	17092.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr20	2474081	rs4815270	T	C	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	2517377	rs6036860	A	G	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	2517432	rs6036861	T	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr20	2517448	rs6036862	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	2517825	rs6114817	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	2518151	rs6049838	T	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr20	2542669	rs7270277	C	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	2552802	.	CT	C	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.732;QD=1.62;ReadPosRankSum=-3.282;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr20	2593006	rs1015159	A	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	2596969	rs4621228	T	A	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	2596998	rs4481063	G	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	2597073	rs4544508	T	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	2597978	rs4815428	G	A	9283.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr20	2598019	rs6083866	C	T	7132.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	2616556	rs910271	T	C	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	2616679	rs2422808	C	G	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	2617993	rs6083914	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	2618033	.	C	CAAAA	1413.73	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;QD=30.08;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr20	2618094	rs6037181	G	A	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	2618140	rs6083915	T	C	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.25;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	2618308	rs6050771	C	T	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	2621998	rs6050798	T	C	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	2673644	.	GGGCGCT	G	187.87	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	2686431	.	C	CCA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=-0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=-0.069;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr20	2732934	rs60014511	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	2775872	rs41306788	T	C	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	2777459	rs1985525	T	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	2777828	rs742707	G	T	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr20	2778075	rs127076	T	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	2779257	rs215541	G	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	2797015	rs215561	G	A	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	2797137	rs11475648	GC	G	852.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.95;ReadPosRankSum=-0.156;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:5,40:0.89:45
chr20	2797756	.	G	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.444;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:109,27:0.20:136
chr20	2816821	rs2274669	C	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.12;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	2840773	rs3818605	C	T	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr20	2842685	rs6051449	A	C	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	2845130	rs730819	G	A	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr20	2846289	rs677344	G	A	278.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	2904143	rs633284	A	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.79;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	2996423	rs1178015	T	A	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	2996497	rs1178016	C	T	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	2996589	rs1178017	G	T	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	3002889	rs544090	A	C	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	3005413	rs568235	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	3007228	rs571058	G	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr20	3007492	rs599538	T	C	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	3007694	rs10668644	A	AGGT	2564.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	3025107	rs6051545	C	T	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr20	3026238	rs6138994	G	T	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	3026345	rs16996832	A	AGCCCC	4633.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:23,111:0.83:134
chr20	3026351	.	G	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=148.452;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=-0.881;QD=0.75;ReadPosRankSum=-3.220;SOR=6.356;set=HC	GT:AD:AF:DP	0/1:149,23:0.13:172
chr20	3026356	.	G	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.442;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=125.855;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.802;QD=0.41;ReadPosRankSum=-3.323;SOR=6.089;set=HC	GT:AD:AF:DP	0/1:156,20:0.11:176
chr20	3026361	.	G	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=97.333;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.177;QD=0.24;ReadPosRankSum=-4.489;SOR=5.781;set=HC	GT:AD:AF:DP	0/1:162,17:0.09:179
chr20	3026415	rs8184100	C	T	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	3052951	rs34097556	C	CA	3928.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	3090848	rs708973	T	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	3147762	rs6051612	A	G	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	3185123	rs11697186	A	T	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	3193842	rs1127354	C	A	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	3193978	rs8362	G	A	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	3199373	rs2422861	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	3203950	rs2236206	T	A	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	3204084	rs9101	G	A	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	3209371	rs2281575	G	A	9027.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr20	3210692	rs6139039	A	G	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	3211064	rs3810561	A	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	3212222	rs147477986	T	TG	4192.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=96;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	3212223	.	A	T	4201.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	3212223	.	AGA	TGG	2789	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=17;NR=46;PP=2789;QD=20;SC=AGTCACCCCTAGAAACAGAGG;SbPval=0.53;Source=Platypus;TC=63;TCF=17;TCR=46;TR=63;WE=3212233;WS=3212212;set=Platypus	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	3212225	.	A	G	4169.77	.	AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	3214020	rs2144771	G	T	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	3214581	rs3803956	C	T	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	3215046	rs6139040	C	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	3218634	rs3810562	G	C	4521.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=-0.634;SOR=0.247;set=HC	GT:AD:AF:DP	1/1:1,177:0.99:178
chr20	3219561	rs113139885	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	3219894	rs6107260	A	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	3233142	rs6037516	C	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	3236015	rs1569942	A	G	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	3240723	rs6051685	C	T	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	3245006	rs6515783	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	3245219	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.216;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr20	3245276	rs6051694	T	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	3251248	rs6037526	T	C	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	3262493	rs6051708	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	3277602	rs2236104	C	A	5960.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	3285140	rs2422864	T	C	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr20	3296279	rs2236115	G	A	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	3298881	.	CAAA	C,CA	1211.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=32.75;SOR=3.477;set=HC	GT:AD:AF:DP	1/2:0,26,11:0.70,0.30:37
chr20	3298894	.	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.309;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.087;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr20	3299054	rs6139071	T	C	9753.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr20	3311438	.	C	CTTT	451.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=21.51;ReadPosRankSum=0.379;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr20	3324487	rs10582105	CGTGTGT	CGT,C	1372.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=40;set=Intersection	GT:AF:DP	1/1:0.97:34
chr20	3329062	rs6139087	TG	CA	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	3362033	rs6051818	T	C	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	3541633	rs235577	A	G	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	3553299	rs11475024	TA	T	157.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.617;QD=9.29;ReadPosRankSum=-1.452;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr20	3556469	rs41279370	T	G	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr20	3557342	.	G	GTCTGTCTGTCTGTCTATCTA	820.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	3564672	rs235540	C	T	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	3564772	rs170976	T	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	3565546	rs235538	C	G	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr20	3575248	rs235532	G	C	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	3605059	rs235519	A	G	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr20	3640467	rs635674	C	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	3640499	rs679393	C	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	3643876	rs12624874	C	T	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	3649679	rs543749	G	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr20	3649713	rs628965	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	3649721	rs628977	T	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	3650066	rs630712	C	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	3651742	rs528557	C	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	3651765	rs3918396	C	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	3652207	rs612709	G	A	8601.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr20	3655085	rs511898	C	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	3657803	rs568251	AT	GA	8223.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr20	3669254	.	C	G	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.751;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:97,30:0.24:127
chr20	3670945	rs609203	C	A	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	3673445	rs3746637	C	T	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	3673815	rs2474436	A	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	3674821	rs59383643	G	GAC	864.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-1.463;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:18,42:0.70:60
chr20	3675333	rs3746638	G	A	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	3675498	rs709012	T	G	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr20	3677095	rs11471725	T	TGCTG	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	3677357	rs501538	T	C	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr20	3677736	rs673114	T	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	3682011	rs1018493	G	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	3682126	rs34924243	C	T	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	3682275	rs1018492	A	G	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	3684022	rs611847	A	G	6741.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr20	3684729	rs625372	T	C	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr20	3686436	rs6037651	C	T	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	3721572	.	C	A	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;ClippingRankSum=0.000;DP=394;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-3.325;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:313,79:0.20:392
chr20	3723091	rs611073	A	G	3419.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.80;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	3732633	rs541760	C	T	14943.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr20	3734386	rs9171	T	C	5569.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	3734514	rs2295340	T	C	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	3740620	rs11470482	GCA	G	6510.73	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:11,253:0.96:264
chr20	3759200	rs2281477	G	A	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	3759528	rs2281478	C	T	8794.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr20	3760548	rs6116037	G	A	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	3767121	.	TGGGGCCCATCCCGGCGCGCCCCCCGCCCCGGGGCCCGGCGCCGCCGCCGCCGCCCCGGGGCGG	T	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=12.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.898;SOR=3.123;set=HC	GT:AD:AF:DP	0/1:82,10:0.11:92
chr20	3778433	rs3746644	T	C	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	3778962	rs141545256	GTTTTT	G	957.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.20;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	3780857	rs140901750	T	TGGACTGGAGACCTGGTGCTAG	2876.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	3783649	rs592687	G	C	9962.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr20	3784110	rs1056720	C	T	11727.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr20	3846843	rs3746660	C	T	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr20	3870124	rs3737084	G	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	3954789	rs2143236	T	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	4155948	rs1741315	G	A	7449.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr20	4162411	rs1124983	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	4163302	rs1051904	A	G	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr20	4164283	rs1741327	A	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr20	4768136	rs55900827	T	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	4768475	rs111533115	A	AAGGGACT	1662.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	4770440	rs2422992	G	A	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	4776659	rs4549182	G	A	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr20	4837929	rs10570616	TACACACAC	T	691.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.69;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	4839888	rs375765400	GT	G	91.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.942;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:78,21:0.21:99
chr20	4839889	rs371530306	T	TA	514.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.017;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=5.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.233;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:45,53:0.54:98
chr20	4839890	rs6052940	T	A	1987.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.185;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=-1.122;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:21,82:0.80:103
chr20	4839897	rs6052941	T	A	3365.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.629;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.79;ReadPosRankSum=-0.896;SOR=0.273;set=HC	GT:AD:AF:DP	1/1:8,105:0.93:113
chr20	4842776	rs6116557	C	T	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr20	4843370	rs3737321	C	T	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr20	4843609	rs6052943	G	A	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	4848271	.	TAA	T	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=5.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=1.192;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr20	4854682	rs1110277	A	G	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr20	4864570	rs2298174	G	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	4865602	rs35589475	C	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	4880132	rs71993570	AGCTCAATGCCTTCTGC	A	1264.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	5098065	rs17351	A	G	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	5099636	rs25406	G	A	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	5261029	rs6038114	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	5261132	rs6038115	G	A	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=26.43;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	5261161	rs150894323	ACT	A	6204.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr20	5261206	rs4553880	T	C	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	5282619	rs3746681	A	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	5283256	rs3746682	C	G	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	5283316	rs3746683	G	C	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	5294496	rs8116897	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	5482307	rs6053447	G	A	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	5528518	rs3747910	A	G	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	5528534	rs3747911	A	G	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	5542052	rs2273371	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	5542092	rs2273372	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	5545484	.	T	TCA	34	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=2;NR=1;PP=34;QD=14.3333333333;SC=GGATTGTCACTCACACACACA;SbPval=0.68;Source=Platypus;TC=19;TCF=13;TCR=6;TR=3;WE=5545492;WS=5545474;set=Platypus	GT:AD:AF:DP	0/1:16,3:0.16:19
chr20	5548208	rs11475275	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.70;ReadPosRankSum=0.091;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr20	5551034	rs1056244	G	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	5556686	rs144724629	TAC	T	344.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	5560875	.	CT	C	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=0.247;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr20	5564774	rs6053517	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	5574134	rs1983694	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	5903067	rs6085324	T	A	6908.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	5903323	rs910122	G	A	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	5903517	rs236151	A	G	5815.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr20	5903848	rs236152	C	G	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	5903894	rs236153	A	G	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	5904040	rs742711	G	A	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	5905550	rs236155	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	5932650	rs17220251	C	T	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	5933108	rs236110	C	A	7855.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=3.023;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=-0.726;SOR=0.111;set=HC	GT:AD:AF:DP	1/1:2,302:0.99:304
chr20	5935385	rs236114	T	C	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	5935449	rs236115	C	T	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	5948706	rs236100	A	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	5948712	rs236101	C	T	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	5975124	rs11472210	G	GAC	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.07;ReadPosRankSum=0.105;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr20	5987212	rs149662716	AGGC	A	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	5987267	rs2294971	A	T	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	5988095	rs4813786	A	G	4647.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr20	5990726	rs59996436	T	TG	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.13;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.355;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr20	6011882	rs2423132	G	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	6064839	rs2232077	T	C	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	6069562	rs6117076	C	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	6077726	rs6076938	T	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:5,36:0.88:41
chr20	6096695	rs2295435	C	T	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	6100002	rs6038363	C	A	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	6100088	rs10373	A	G	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	6100230	rs2273423	A	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	6751034	rs1049007	A	G	10958.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr20	6759115	rs235768	A	T	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	7887025	rs6055387	G	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	8130943	rs16994453	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	8628696	rs2235947	G	A	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	8639443	rs2076640	T	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	8639474	rs2076639	C	A	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	8665502	.	G	GA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=2.692;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.465;QD=1.24;ReadPosRankSum=-1.562;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr20	8678446	rs2295179	G	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	8698565	rs6039243	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	8703145	rs6086563	C	G	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	8705496	rs6056043	A	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr20	8708166	rs17446441	A	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	8713842	rs993670	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	8719777	rs6039246	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	8737734	rs2076413	G	A	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=3.983;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	8741247	rs3886935	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	8755243	rs2235613	T	C	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr20	8769180	rs2327089	C	T	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	8769423	rs2076411	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	8770108	rs4633993	A	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	8770130	rs2327090	A	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	8770318	rs4816086	A	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	8770822	rs2294597	C	T	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.568;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	8770932	rs2294598	A	C	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	8773295	rs6056119	T	C	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr20	8782901	rs6056128	G	C	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	9288522	rs6077510	G	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	9346202	rs17481185	A	G	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	9364799	rs2076234	A	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.44;SOR=2.001;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	9453567	rs2206389	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	9453901	rs11475002	AT	A	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=0.418;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr20	9497057	rs2232267	A	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	9625003	rs4816157	G	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	10023689	rs4813909	G	A	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	10393145	rs221667	C	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	10624924	.	TCA	T	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.859;QD=2.59;ReadPosRankSum=-0.567;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr20	10633237	rs1131695	G	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	10633313	rs6040055	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	10639222	rs1801138	G	A	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr20	10639385	rs2273060	A	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	11008382	rs4813955	A	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	11009079	rs45609436	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	11790885	rs3036550	C	CTT	620.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	11791008	rs803665	C	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	11791094	rs803664	G	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	11791211	rs803663	T	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	11830180	rs33956420	CT	C	953.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.298;QD=20.73;ReadPosRankSum=1.584;SOR=2.540;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr20	12990044	rs3761895	T	C	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	13029764	rs1431433	A	C	8414.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr20	13029862	rs919604	C	T	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr20	13029920	rs934335	C	G	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr20	13053018	rs243887	T	G	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	13053035	rs243888	A	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	13055258	rs6131426	C	A	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr20	13055267	rs150837910	G	GA	992.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	13060220	rs8119959	G	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr20	13060331	rs8120012	G	A	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr20	13073963	rs1030561	T	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	13074235	rs708937	G	A	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr20	13074243	rs1011290	T	A	7513.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	13134735	.	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.930;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:174,29:0.14:203
chr20	13260252	rs911642	C	T	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	13269438	rs34117863	C	CT	830.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.506;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.83;ReadPosRankSum=-0.634;SOR=0.182;set=HC	GT:AD:AF:DP	1/1:8,48:0.86:56
chr20	13280185	.	G	A	599.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr20	13509263	rs3761890	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	13595316	rs2295506	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	13597717	rs6033773	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	13605903	rs2070307	A	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	13695824	rs372853781	CA	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.824;SOR=1.927;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr20	13698006	rs4239710	T	C	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	13750448	rs35589194	C	CA	300.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	13765944	.	C	CGCGGGGCGGCGGGGCG	2035.73	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=45.24;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	13769127	rs6042362	A	G	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	13782409	rs1015517	A	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	13845987	rs761811	C	T	4871.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	13847420	rs660710	A	G	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr20	13856558	rs73085418	G	A	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	13868745	rs243910	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	14306953	rs6079391	G	T	7086.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	14830453	rs438632	C	T	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	14830596	rs6079581	C	G	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	15480308	rs2145014	G	T	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	15480548	rs2145015	T	A	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	15843205	rs145513176	GCA	G	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-1.929;SOR=0.137;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr20	15948326	rs11467891	GA	G	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=2.211;QD=5.43;ReadPosRankSum=0.235;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr20	16025192	.	CT	C	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.837;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:104,35:0.25:139
chr20	16351329	rs2144893	C	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	16352234	rs11399338	C	CA	536.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=2.053;SOR=0.186;set=HC	GT:AD:AF:DP	1/1:5,30:0.86:35
chr20	16359567	rs6034464	A	G	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr20	16362173	.	CAA	C,CA	1476.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=2.304;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.694;QD=12.41;ReadPosRankSum=1.178;SOR=1.104;set=HC	GT:AD:AF:DP	1/2:19,45,55:0.38,0.46:119
chr20	16475112	rs6044027	G	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	16486698	rs2295115	G	A	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	16492242	rs6135772	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	16493533	rs6135775	T	C	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr20	16493580	rs6135776	A	G	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	16496362	rs6044046	T	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	16496415	rs6131837	T	C	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	16506939	rs6034517	C	T	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	16506971	rs6044072	A	T	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.91;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	16554067	rs4814510	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	16729262	rs6080387	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	16729654	rs10627353	A	AAGATG	3368.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	16730464	rs6075100	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	17436895	rs2021789	G	A	4183.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.501;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.52;ReadPosRankSum=-0.510;SOR=0.596;set=HC	GT:AD:AF:DP	1/1:2,150:0.99:152
chr20	17462150	rs11907226	C	T	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	17474690	rs6105762	T	G	9710.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr20	17474791	rs6080717	G	A	9548.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr20	17474968	rs6080718	T	C	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	17479730	rs6111549	T	C	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	17479763	rs2235585	T	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	17539168	rs6044883	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	17594714	rs35586556	GC	G	1070.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	17595329	rs7261001	G	A	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	17596731	rs2236250	C	T	10833.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr20	17597331	rs911347	C	T	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	17597361	rs911348	A	G	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	17599214	rs2328181	T	C	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	17600357	rs11960	G	A	9758.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr20	17602028	rs2236253	T	C	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr20	17605016	rs2236254	T	C	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	17605240	rs6034867	A	T	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	17606372	rs2295672	T	C	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr20	17610729	rs6044917	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr20	17617531	rs6044923	T	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	17640009	rs13040917	A	C	8025.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=3.363;MLEAC=2;MLEAF=1.000;MQ=58.85;MQRankSum=-0.329;QD=26.06;ReadPosRankSum=2.030;SOR=0.490;set=HC	GT:AD:AF:DP	1/1:1,307:1.00:308
chr20	17674451	rs6080781	G	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	17705677	rs4814640	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	17932138	rs375061288	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	17934882	rs117151396	A	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	18022171	rs1571431	C	T	8414.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr20	18118740	rs1205190	T	G	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr20	18123084	rs78016265	CT	C	951.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	18143117	rs1205193	T	G	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	18167977	rs2747404	T	C	6284.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	18296072	rs1033545	T	A	5512.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr20	18361603	rs1883938	T	C	7333.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr20	18393312	rs6075337	C	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	18393499	rs6075338	C	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	18395988	rs6035037	C	T	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	18414356	rs6035042	A	G	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	18429497	rs6081147	T	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=30.96;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	18432690	rs2424196	T	A	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	18445963	rs6035051	A	G	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;QD=26.62;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	18446050	rs111987137	A	ATGTGCACTTATAGC	2778.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=42.75;SOR=2.267;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	18448079	rs1474974	C	A	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	18460614	rs6035056	A	T	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	18460641	rs6081160	G	A	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr20	18461237	rs57962043	GT	G	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:3,40:0.93:43
chr20	18462421	rs1055171	A	G	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr20	18462492	rs4813332	A	G	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	18462518	rs6111983	C	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	18464110	rs3827965	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	18470664	rs3748450	A	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	18470980	rs2424217	A	G	11859.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr20	18474566	rs17734238	C	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	18476288	.	GA	G	312	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5001;HP=18;HapScore=3;MGOF=76;MMLQ=23;MQ=60.0;NF=7;NR=0;PP=312;QD=45.0;SC=TCACAGAATTGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=12;TCF=11;TCR=1;TR=7;WE=18476298;WS=18476278;set=Platypus	GT:AD:AF:DP	0/1:5,7:0.58:12
chr20	18477614	rs2247746	A	G	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	18477870	rs2247757	T	A	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	18505403	rs3762200	G	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	18506616	rs911115	T	C	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	18511456	rs6081189	A	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	18511504	rs3762201	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	18523864	rs2295557	C	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	18529233	rs3736775	T	A	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	18535982	rs1555363	A	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	18548425	rs6075366	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	18549848	rs11475239	CT	C	399.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=1.425;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr20	18550218	rs71194252	CT	C	74.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.396;QD=5.75;ReadPosRankSum=-3.195;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr20	18568918	rs6075372	A	G	47.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	18574247	rs6136423	G	A	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	18576912	rs1884875	C	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	18608945	rs3818220	G	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	19261623	rs1569767	G	A	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	19261922	rs3790176	G	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	19560555	rs11087288	GA	G	6796.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	19560664	rs3790261	G	A	5470.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	19634732	rs3790278	G	A	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	19634747	rs3790279	T	C	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	19646436	rs11470600	CGTGTGT	C,CGT	2048.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.06;MQRankSum=0.412;QD=34.72;ReadPosRankSum=-0.784;SOR=2.265;set=HC	GT:AD:AF:DP	1/2:1,17,41:0.29,0.69:59
chr20	19654454	rs1406971	A	G	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	19677615	rs113059140	AAGGGAGGGAGGG	A	290.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=36.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	19867256	rs11362637	CT	C	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.581;QD=9.36;ReadPosRankSum=1.891;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr20	19915611	rs374156281	TA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.306;QD=1.20;ReadPosRankSum=0.999;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr20	19941498	rs188608527	C	A	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	19941538	rs199562	A	T	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	19945493	rs6046489	T	C	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	19951534	rs3803981	T	A	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	20018882	.	T	TA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.189;QD=3.29;ReadPosRankSum=-1.502;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr20	20079251	.	CA	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.586;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr20	20139951	rs11475376	GC	G	4184.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	20140196	rs2179823	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	20146875	rs6046679	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	20150027	rs6075630	C	T	7115.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr20	20150182	rs6112802	A	T	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	20152462	rs996197	A	C	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr20	20152581	rs2328500	G	A	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	20168497	rs2179825	A	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	20243489	rs59345711	C	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	20243558	rs34200155	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	20257759	rs17310726	G	A	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	20269631	rs1410263	C	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	20350516	rs6137007	T	G	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr20	20377421	rs11426947	A	AC	12037.73	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=31.68;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr20	20445793	rs5840886	T	TCACACA,TCACACACA	1246.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.082;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=-0.134;QD=41.56;ReadPosRankSum=0.125;SOR=3.258;set=HC	GT:AD:AF:DP	1/2:2,11,17:0.37,0.57:30
chr20	20609964	.	AACACACACACAC	A,AAC	2640.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;QD=41.26;SOR=1.044;set=HC	GT:AD:AF:DP	1/2:0,10,54:0.16,0.84:64
chr20	21142441	rs11482798	G	GA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=5.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-2.249;SOR=1.495;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chr20	21186161	rs11087346	A	AG	5346.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr20	21186296	rs11321878	TA	T	954.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=-0.205;SOR=0.557;set=HC	GT:AD:AF:DP	1/1:11,67:0.86:78
chr20	21196121	.	C	CA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.615;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr20	21362703	rs11476840	TA	T	5946.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	21362758	rs6047417	T	G	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	22562674	rs1212275	T	C	10716.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.05;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr20	23016970	rs3746726	T	G	17791.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr20	23017017	rs2567609	T	C	17254.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr20	23017044	rs3746728	C	T	15384.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr20	23017082	rs2567608	T	C	14344.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr20	23064810	rs11087413	C	T	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	23065209	rs3746731	G	A	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	23065342	rs3746732	A	G	8022.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr20	23345844	rs6048760	A	C	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	23350490	rs57322153	T	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	23350790	rs10485644	C	T	11138.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr20	23377600	rs3736756	C	A	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	23401904	rs377282170	ACCC	A	14403.73	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,336:0.99:338
chr20	23424613	rs3746736	T	C	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr20	23424660	rs12625959	G	C	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr20	23425264	rs57896475	G	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	23431011	rs2273237	A	G	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	23472391	rs2983288	A	G	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	23473522	rs202213134	AT	A	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.463;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr20	23476412	rs11482296	C	CT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.717;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr20	23529377	rs3004129	G	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	23529388	rs2983611	C	T	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	23548774	rs2983617	T	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	23584116	rs726217	G	A	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	23586184	rs2983639	T	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	23586360	rs2983640	G	A	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	23615819	.	TCA	T	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.866;QD=4.28;ReadPosRankSum=0.027;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:92,27:0.23:119
chr20	23618395	rs6138024	T	C	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	23666690	rs2282378	C	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	23669630	rs7267397	A	G	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr20	23729722	rs3188314	G	T	17952.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr20	23729759	rs112232806	C	G	19773.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,747:1.00:747
chr20	23731494	rs6076122	A	G	6521.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	23731560	rs6076123	C	T	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	24524218	rs4815274	C	G	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	24524245	rs4813519	A	G	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	24645939	rs2892217	G	A	7819.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr20	24930221	rs45469992	G	A	7263.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr20	24987438	rs6083718	C	T	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	24993414	rs6132785	T	C	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	24994289	rs6050249	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	25004071	rs4813543	G	T	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	25011423	rs6050259	T	C	14089.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr20	25011639	rs60849220	A	G	6224.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr20	25027526	rs6083730	G	A	8973.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr20	25027630	rs6106989	G	A	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	25027692	rs6115015	G	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	25053105	rs743018	G	A	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	25062715	rs8123716	C	A	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr20	25176296	rs6083773	A	C	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	25190598	rs1007707	A	G	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	25195394	rs6050445	C	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	25195509	rs6050446	A	G	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	25197982	rs4815394	T	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	25229231	rs2273473	C	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	25252161	rs2281559	C	T	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr20	25257215	rs2254046	G	A	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	25257260	rs2257370	G	C	8265.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr20	25257462	rs2424699	G	A	11308.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,429:1.00:429
chr20	25258916	rs11466827	G	GCCCTGGGACTGGGTCATGGGGCATGTGCC	1711.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	25259006	rs2228976	G	T	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	25259200	rs2261109	T	C	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	25259807	rs2261115	G	A	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr20	25260931	rs2227890	A	G	10992.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr20	25261784	rs2261747	G	A	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr20	25262536	rs10582106	TCTC	T	873.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	25262769	rs2227891	G	A	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	25262789	rs2261790	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	25263648	rs2145126	G	A	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	25264664	rs2257705	T	C	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	25264814	rs2227892	T	C	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	25264910	rs2257712	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	25268920	rs3002702	T	C	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr20	25270339	rs2257991	T	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	25271033	rs2258053	C	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	25271086	rs2257432	T	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	25271326	rs2258066	C	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	25275553	rs16436	GTTAGTT	G	2500.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	25275843	rs2258719	C	T	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	25276297	rs1130694	G	A	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr20	25276343	rs2258728	G	A	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	25281398	rs2424708	C	T	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	25282944	rs10966	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	25284343	rs2260197	T	C	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	25426693	rs5841057	CA	C	6777.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	25434351	rs2072975	A	G	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	25436283	rs2235607	C	G	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	25442097	rs6107047	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	25442989	rs3036810	G	GGGGAGCC	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	25442991	.	T	TGGTG	997.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	25442992	rs2387889	C	G	1006.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	25442997	rs559771	C	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	25443278	rs113237945	A	ATTTGTTTTGT	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	25447896	rs404394	A	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	25447931	rs404148	A	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	25456888	rs437635	A	G	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr20	25457049	rs68078266	GCTCCCA	G	11227.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr20	25459919	rs84816	G	A	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	25469844	rs2072977	A	G	13907.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr20	25470056	rs431579	T	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	25479058	rs400357	A	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	25520827	rs11472175	A	AAC	5988.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	25755526	rs112684378	C	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=52.12;MQRankSum=-2.088;QD=6.03;ReadPosRankSum=-0.496;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr20	25755984	rs368432091	AAGAAAG	A	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-6.945;QD=2.80;ReadPosRankSum=0.331;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr20	25756020	rs139676733	CA	C	197.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr20	25829184	rs74788234	A	G	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,66:0.48:137
chr20	25829252	.	TG	T	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DP=388;ExcessHet=3.0103;FS=3.860;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-8.848;QD=0.76;ReadPosRankSum=0.394;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:342,44:0.11:386
chr20	25829290	rs75735480	G	T	2572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-17.088;QD=5.59;ReadPosRankSum=3.728;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:371,89:0.19:460
chr20	25829292	rs76588078	C	T	2261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-16.236;QD=4.82;ReadPosRankSum=4.524;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:385,84:0.18:469
chr20	25829312	rs78355493	G	T	2429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=-18.031;QD=4.53;ReadPosRankSum=4.104;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:445,91:0.17:536
chr20	25829319	rs76467023	A	G	3737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-22.758;QD=6.77;ReadPosRankSum=1.535;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:415,137:0.25:552
chr20	25829342	rs75063166	T	C	4541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=2.018;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-21.926;QD=8.24;ReadPosRankSum=-5.906;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:404,147:0.27:551
chr20	25829352	rs74961672	T	C	4082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=-20.735;QD=7.82;ReadPosRankSum=-5.675;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:390,132:0.25:522
chr20	25829384	rs75757905	T	C	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.743;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=23.090;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-15.396;QD=4.34;ReadPosRankSum=1.113;SOR=1.843;set=HC	GT:AD:AF:DP	0/1:288,67:0.19:355
chr20	25829384	.	TTA	CTG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=1;MGOF=34;MMLQ=28;MQ=47.25;NF=38;NR=88;PP=2944;QD=20;SC=AGTTCGCAAGTTAGGCTTCCT;SbPval=0.86;Source=Platypus;TC=410;TCF=156;TCR=254;TR=126;WE=25829394;WS=25829374;set=Platypus	GT:AD:AF:DP	1/0:284,126:0.31:410
chr20	25829386	rs74835374	A	G	1549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=23.720;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-15.073;QD=4.53;ReadPosRankSum=0.924;SOR=1.900;set=HC	GT:AD:AF:DP	0/1:276,66:0.19:342
chr20	25829435	rs79037868	C	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.85;MQRankSum=-8.471;QD=1.84;ReadPosRankSum=0.728;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:199,39:0.16:238
chr20	25829436	rs73348912	T	C	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.816;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.667;MLEAC=1;MLEAF=0.500;MQ=52.86;MQRankSum=-7.998;QD=1.99;ReadPosRankSum=0.680;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:198,39:0.16:237
chr20	25829470	rs75119730	A	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.414;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=51.62;MQRankSum=-5.445;QD=2.00;ReadPosRankSum=-1.742;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:113,22:0.16:135
chr20	25900042	rs11699407	A	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr20	25900128	rs79754881	A	T	2152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-2.982;QD=10.98;ReadPosRankSum=-0.772;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:122,74:0.38:196
chr20	25900135	rs11699441	C	A	2807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=54.51;MQRankSum=-3.088;QD=13.76;ReadPosRankSum=-0.840;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:126,78:0.38:204
chr20	25900162	rs6037279	C	A	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:110,121:0.52:231
chr20	25900190	rs199687742	AAATT	A	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.09;MQRankSum=-3.069;QD=2.34;ReadPosRankSum=-2.163;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:178,28:0.14:206
chr20	25900215	rs189420178	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:135,58:0.30:193
chr20	25900262	rs76621451	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:81,27:0.25:108
chr20	25900276	rs75406844	G	T	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.973;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=14.812;MLEAC=1;MLEAF=0.500;MQ=49.39;MQRankSum=-6.441;QD=7.96;ReadPosRankSum=-0.229;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:72,24:0.25:96
chr20	25900286	rs76626696	G	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.956;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=26.894;MLEAC=1;MLEAF=0.500;MQ=51.12;MQRankSum=-6.388;QD=6.69;ReadPosRankSum=0.088;SOR=3.511;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr20	25900330	.	AAC	A	178	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=8;HapScore=2;MGOF=59;MMLQ=22;MQ=46.89;NF=3;NR=9;PP=178;QD=15.6666666667;SC=GTTAAAAAAAAACACACACAC;SbPval=0.38;Source=Platypus;TC=44;TCF=8;TCR=36;TR=12;WE=25900351;WS=25900312;set=Platypus	GT:AD:AF:DP	0/1:32,12:0.27:44
chr20	26061746	rs369643668	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-4.986;QD=1.26;ReadPosRankSum=-2.107;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr20	26061782	rs370228271	CTT	C	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=55.09;MQRankSum=-5.607;QD=4.09;ReadPosRankSum=2.179;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr20	26061803	rs78281752	C	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=7.099;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-6.119;QD=2.08;ReadPosRankSum=2.314;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:102,26:0.20:128
chr20	26061859	rs74752031	G	T	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=7.770;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-12.939;QD=8.00;ReadPosRankSum=-1.464;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:167,56:0.25:223
chr20	26061865	rs79051971	G	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-9.796;QD=2.04;ReadPosRankSum=-4.037;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:190,34:0.15:224
chr20	26061877	rs74473084	G	A	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.502;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=10.844;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-11.697;QD=5.39;ReadPosRankSum=-4.344;SOR=1.496;set=HC	GT:AD:AF:DP	0/1:179,41:0.19:220
chr20	26061880	rs80023315	A	G	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=10.050;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-12.040;QD=5.48;ReadPosRankSum=-4.106;SOR=1.512;set=HC	GT:AD:AF:DP	0/1:176,36:0.17:212
chr20	26061884	rs78196071	C	G	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.613;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=19.482;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-12.550;QD=4.15;ReadPosRankSum=-3.924;SOR=2.163;set=HC	GT:AD:AF:DP	0/1:169,32:0.16:201
chr20	26061909	rs116264914	G	A	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.502;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=35.046;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-9.873;QD=0.97;ReadPosRankSum=-2.986;SOR=5.202;set=HC	GT:AD:AF:DP	0/1:144,14:0.09:158
chr20	26062002	rs74725001	G	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:47,13:0.22:60
chr20	26062021	rs79451834	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr20	26062032	rs76871018	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.746;MLEAC=1;MLEAF=0.500;MQ=53.19;MQRankSum=-3.051;QD=1.48;ReadPosRankSum=-2.511;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr20	26062036	rs77424811	A	G	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr20	26062047	rs80162470	A	G	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.793;MLEAC=1;MLEAF=0.500;MQ=54.40;MQRankSum=-5.982;QD=16.75;ReadPosRankSum=0.189;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:42,34:0.45:76
chr20	26063560	rs5742261	G	A	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	26063625	rs77830989	T	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-11.768;QD=1.26;ReadPosRankSum=0.326;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:146,16:0.10:162
chr20	26063643	rs41275516	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-11.188;QD=2.32;ReadPosRankSum=0.065;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:111,16:0.13:127
chr20	26063645	rs73105823	G	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-11.188;QD=2.42;ReadPosRankSum=0.080;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:111,16:0.13:127
chr20	26063684	rs78016604	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-9.080;QD=0.51;ReadPosRankSum=-0.094;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:75,9:0.11:84
chr20	26063712	rs113808324	A	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-6.885;QD=0.93;ReadPosRankSum=0.258;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:44,5:0.10:49
chr20	26063726	rs199551690	T	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:33,5:0.13:38
chr20	26094406	.	A	AC	135.73	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:71,19:0.21:90
chr20	26094409	.	T	A	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=4.676;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-7.910;QD=2.63;ReadPosRankSum=-3.136;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr20	26094420	.	T	C	877.77	.	AC=1;AF=0.500;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	0/1:86,46:0.35:132
chr20	26094475	rs374094583	AC	A	7124.73	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:207,183:0.47:390
chr20	26094483	rs146324498	CAT	C	7189.73	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:229,195:0.46:424
chr20	26094564	rs79802274	T	G	5595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-1.531;QD=9.96;ReadPosRankSum=0.343;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:298,264:0.47:562
chr20	26094567	rs62211581	T	C	10531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-5.074;QD=19.04;ReadPosRankSum=1.302;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:270,283:0.51:553
chr20	26094605	rs150462295	G	A	7047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=-2.496;QD=16.94;ReadPosRankSum=-2.217;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:227,189:0.45:416
chr20	26094609	rs80248029	C	A	6881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-2.819;QD=17.16;ReadPosRankSum=-1.904;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:221,180:0.45:401
chr20	26094638	rs76011113	C	T	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:150,112:0.43:262
chr20	26094651	rs77014314	T	C	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.437;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-5.217;QD=5.41;ReadPosRankSum=-0.100;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:135,63:0.32:198
chr20	26094660	rs75350116	T	C	2348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.915;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=11.688;MLEAC=1;MLEAF=0.500;MQ=52.02;MQRankSum=-8.367;QD=14.23;ReadPosRankSum=1.358;SOR=1.790;set=HC	GT:AD:AF:DP	0/1:96,69:0.42:165
chr20	26094689	rs79312112	A	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr20	26189059	.	C	G	3651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.040;ClippingRankSum=0.000;DP=458;ExcessHet=3.0103;FS=7.648;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-9.045;QD=7.97;ReadPosRankSum=-0.623;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:350,108:0.24:458
chr20	26189065	.	G	A	3174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=0.000;DP=399;ExcessHet=3.0103;FS=11.678;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-8.557;QD=7.96;ReadPosRankSum=-2.623;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:303,96:0.24:399
chr20	26189075	.	T	C	2541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=10.782;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-8.832;QD=7.04;ReadPosRankSum=-1.719;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:281,80:0.22:361
chr20	26189080	.	C	T	2346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.663;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=13.436;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-9.052;QD=6.98;ReadPosRankSum=-0.765;SOR=1.462;set=HC	GT:AD:AF:DP	0/1:267,69:0.21:336
chr20	26189097	.	G	A	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=16.599;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-9.988;QD=3.95;ReadPosRankSum=0.074;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:228,49:0.18:277
chr20	26189104	.	G	A	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.632;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=43.162;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-10.930;QD=4.02;ReadPosRankSum=1.573;SOR=5.318;set=HC	GT:AD:AF:DP	0/1:192,35:0.15:227
chr20	26189108	rs5000466	A	C	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.451;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=34.976;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-10.846;QD=4.20;ReadPosRankSum=1.350;SOR=4.819;set=HC	GT:AD:AF:DP	0/1:177,33:0.16:210
chr20	26189110	.	G	A	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=35.205;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-10.675;QD=4.04;ReadPosRankSum=0.878;SOR=4.848;set=HC	GT:AD:AF:DP	0/1:171,33:0.16:204
chr20	26189115	.	A	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.899;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=20.310;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-10.855;QD=3.96;ReadPosRankSum=1.720;SOR=3.944;set=HC	GT:AD:AF:DP	0/1:151,27:0.15:178
chr20	26189116	.	C	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.307;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=20.279;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-10.823;QD=3.83;ReadPosRankSum=1.618;SOR=3.960;set=HC	GT:AD:AF:DP	0/1:150,27:0.15:177
chr20	29625745	rs73621455	A	T	3229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.226;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=6.594;MLEAC=1;MLEAF=0.500;MQ=50.06;MQRankSum=-5.470;QD=14.75;ReadPosRankSum=-1.781;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:114,105:0.48:219
chr20	29625746	rs76804580	C	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.12;MQRankSum=-2.939;QD=0.78;ReadPosRankSum=-0.992;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:193,28:0.13:221
chr20	29625769	rs78251253	C	T	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=-8.171;QD=1.61;ReadPosRankSum=-1.487;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:348,50:0.13:398
chr20	29625788	rs4635596	C	T	6910.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:304,298:0.50:602
chr20	29625838	rs62198353	C	A	14599.77	.	AC=1;AF=0.500;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	0/1:367,555:0.60:922
chr20	29625845	.	A	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DP=983;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-9.249;QD=0.09;ReadPosRankSum=0.287;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:911,70:0.07:981
chr20	29625856	.	A	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DP=1073;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-8.628;QD=0.04;ReadPosRankSum=2.037;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:1000,71:0.07:1071
chr20	29625876	rs73611718	C	T	6792.77	.	AC=1;AF=0.500;AN=2;DB;DP=1187;set=Intersection	GT:AD:AF:DP	0/1:861,319:0.27:1180
chr20	29625925	rs112430454	C	CTTG	1215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.142;ClippingRankSum=0.000;DB;DP=722;ExcessHet=3.0103;FS=13.420;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-17.435;QD=1.76;ReadPosRankSum=2.704;SOR=2.008;set=HC	GT:AD:AF:DP	0/1:606,85:0.12:691
chr20	29625935	rs62198354	A	G	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:454,77:0.15:531
chr20	29625997	rs62198355	A	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:185,79:0.30:264
chr20	29626027	rs2137756	C	T	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:109,74:0.40:183
chr20	29628099	rs73621498	G	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:95,22:0.19:117
chr20	29628112	rs73621499	C	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:124,44:0.26:168
chr20	29628125	.	TG	CA	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.145;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=8.242;JOINED;MLEAC=1;MLEAF=0.500;MQ=52.68;MQRankSum=-7.284;QD=3.91;ReadPosRankSum=-2.665;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:239,41:0.15:280
chr20	29628128	rs73621500	C	T	4057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.131;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=16.881;MLEAC=1;MLEAF=0.500;MQ=52.56;MQRankSum=-15.150;QD=13.53;ReadPosRankSum=-4.830;SOR=1.611;set=HC	GT:AD:AF:DP	0/1:189,111:0.37:300
chr20	29628136	rs73621501	T	G	4338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.250;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=2.899;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=-15.266;QD=10.69;ReadPosRankSum=-5.802;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:241,165:0.41:406
chr20	29628158	rs73605203	G	A	9678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=54.04;MQRankSum=-16.176;QD=12.79;ReadPosRankSum=-2.764;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:421,336:0.44:757
chr20	29628164	rs62199575	G	A	19303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.750;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=54.29;MQRankSum=-22.228;QD=22.16;ReadPosRankSum=-8.196;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:316,555:0.64:871
chr20	29628271	rs62199576	C	T	29366.77	.	AC=1;AF=0.500;AN=2;DB;DP=1901;set=Intersection	GT:AD:AF:DP	0/1:799,1100:0.58:1899
chr20	29628335	rs11152455	A	T	9264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.567;ClippingRankSum=0.000;DB;DP=950;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.58;MQRankSum=-21.112;QD=9.82;ReadPosRankSum=-4.441;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:655,288:0.31:943
chr20	29628341	rs11152456	C	A	13893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.140;ClippingRankSum=0.000;DB;DP=880;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=52.40;MQRankSum=-27.464;QD=15.86;ReadPosRankSum=-4.079;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:515,361:0.41:876
chr20	29628361	rs11152457	A	C	7298.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:451,265:0.37:716
chr20	29628431	rs11152458	C	T	6814.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:187,268:0.59:455
chr20	29628477	rs62199577	T	A	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.521;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=3.141;MLEAC=1;MLEAF=0.500;MQ=54.71;MQRankSum=-4.279;QD=7.46;ReadPosRankSum=2.060;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:182,91:0.33:273
chr20	29628488	rs11152459	C	T	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:155,93:0.38:248
chr20	29628498	rs62199578	A	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.386;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-1.839;QD=2.23;ReadPosRankSum=0.047;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:179,33:0.16:212
chr20	29628519	rs76426821	G	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.262;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-1.113;QD=2.83;ReadPosRankSum=0.008;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:133,31:0.19:164
chr20	29630570	.	G	A	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.026;ClippingRankSum=0.000;DP=353;ExcessHet=3.0103;FS=3.620;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=1.791;QD=4.08;ReadPosRankSum=-1.079;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:267,84:0.24:351
chr20	29630695	rs6087171	C	A	4651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=1732;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=4.547;QD=2.71;ReadPosRankSum=2.869;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:1356,363:0.21:1719
chr20	29630758	rs10084539	C	G	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;ClippingRankSum=0.000;DB;DP=1287;ExcessHet=3.0103;FS=4.933;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-32.459;QD=0.71;ReadPosRankSum=7.047;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:1151,124:0.10:1275
chr20	29630760	rs137900323	T	C	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.021;ClippingRankSum=0.000;DB;DP=1262;ExcessHet=3.0103;FS=6.489;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-32.152;QD=0.73;ReadPosRankSum=7.251;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:1127,124:0.10:1251
chr20	29632519	rs76216438	GA	G	72.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:68,15:0.18:83
chr20	29632543	rs9647042	T	C	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.320;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=20.031;MLEAC=1;MLEAF=0.500;MQ=51.40;MQRankSum=-6.449;QD=3.73;ReadPosRankSum=-0.422;SOR=3.135;set=HC	GT:AD:AF:DP	0/1:120,33:0.22:153
chr20	29632564	rs2379677	G	A	6156.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:34,222:0.87:256
chr20	29632593	rs112146379	A	G	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=53.70;MQRankSum=2.217;QD=1.85;ReadPosRankSum=-0.726;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:472,101:0.18:573
chr20	29632638	rs9647043	C	A	2002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DB;DP=864;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.33;MQRankSum=5.619;QD=2.32;ReadPosRankSum=0.233;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:692,172:0.20:864
chr20	29632643	rs143379667	T	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.32;MQRankSum=-2.993;QD=0.80;ReadPosRankSum=0.508;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:760,117:0.13:877
chr20	29632662	.	G	T	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DP=952;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=-5.770;QD=1.03;ReadPosRankSum=2.648;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:734,126:0.15:860
chr20	29632674	rs138867112	T	TA	2226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=965;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=8.195;QD=2.39;ReadPosRankSum=2.326;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:743,190:0.20:933
chr20	29632709	rs78816635	C	T	4038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=788;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-4.850;QD=5.14;ReadPosRankSum=4.446;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:641,145:0.18:786
chr20	29632714	rs76788819	CT	AG	4310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DB;DP=749;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.49;MQRankSum=-5.950;QD=5.76;ReadPosRankSum=2.620;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:599,149:0.20:748
chr20	29632726	rs138922778	CTATT	C	3440.73	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:474,121:0.20:595
chr20	29632761	rs6057390	T	C	11557.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:76,317:0.81:393
chr20	29632772	rs113430333	G	A	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.828;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-2.158;QD=1.33;ReadPosRankSum=-0.463;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:288,52:0.15:340
chr20	29633761	rs147786780	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.760;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.28;MQRankSum=-2.588;QD=1.21;ReadPosRankSum=0.313;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:29,4:0.12:33
chr20	29633770	rs73621653	T	TAA	550.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr20	29633794	rs10084493	C	A	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.947;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.06;MQRankSum=-6.167;QD=12.34;ReadPosRankSum=1.358;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr20	29633847	.	ATGGCAT	AGGCAT,A	833.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=172;set=Intersection	GT:AF:DP	0/1:0.18:172
chr20	29633849	rs374283656	GGC	G	866.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=6.608;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=3.885;QD=4.92;ReadPosRankSum=2.799;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:145,31:0.18:176
chr20	29633853	.	T	TTA	902.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.482;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=8.018;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=3.893;QD=5.10;ReadPosRankSum=2.156;SOR=1.453;set=HC	GT:AD:AF:DP	0/1:145,32:0.18:177
chr20	29633854	rs77178122	G	A	914.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.096;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=8.017;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=3.959;QD=5.11;ReadPosRankSum=2.303;SOR=1.462;set=HC	GT:AD:AF:DP	0/1:147,32:0.18:179
chr20	29633854	.	G	GATTAA	2260	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=5;HapScore=1;MGOF=40;MMLQ=28;MQ=48.61;NF=48;NR=24;PP=2260;QD=31.8611111111;SC=TATATGGCATGTTTTACATAG;SbPval=0.88;Source=Platypus;TC=167;TCF=95;TCR=72;TR=72;WE=29633869;WS=29633837;set=Platypus	GT:AD:AF:DP	1/0:95,72:0.43:167
chr20	29633916	rs2554494	G	T	2297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=11.559;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-5.845;QD=6.16;ReadPosRankSum=1.137;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:295,78:0.21:373
chr20	29633927	rs62196372	C	A	2319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=12.573;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-5.253;QD=5.96;ReadPosRankSum=0.652;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:313,76:0.20:389
chr20	29633929	rs7509092	A	G	2261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=12.928;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-5.636;QD=5.84;ReadPosRankSum=0.703;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:314,73:0.19:387
chr20	29633938	rs61041024	A	G	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-10.308;QD=1.06;ReadPosRankSum=-2.008;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:342,53:0.13:395
chr20	29633952	rs62196374	C	T	1413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-6.307;QD=3.46;ReadPosRankSum=-0.543;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:349,60:0.15:409
chr20	29633966	rs201513813	GTT	G	3940.73	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:181,153:0.46:334
chr20	29633986	rs2379676	A	C	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.020;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=8.875;MLEAC=1;MLEAF=0.500;MQ=54.86;MQRankSum=-7.213;QD=1.95;ReadPosRankSum=-0.593;SOR=1.383;set=HC	GT:AD:AF:DP	0/1:332,41:0.11:373
chr20	29634037	rs4006816	G	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:141,92:0.39:233
chr20	29634049	rs2379675	G	C	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:111,71:0.39:182
chr20	29634102	rs113531250	TC	T	539.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr20	29634104	rs56780525	C	T	548.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.099;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-6.885;QD=10.76;ReadPosRankSum=-3.405;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr20	29652000	rs62206780	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.278;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=1.650;QD=0.46;ReadPosRankSum=1.168;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:174,24:0.12:198
chr20	29652005	.	A	G	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.915;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=10.913;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=1.002;QD=5.51;ReadPosRankSum=0.317;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:161,47:0.23:208
chr20	29652010	rs78663325	C	T	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.411;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=0.883;QD=5.57;ReadPosRankSum=-0.283;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:164,52:0.24:216
chr20	29652036	rs62206781	C	T	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:226,136:0.38:362
chr20	29652065	rs73611950	A	G	3373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-4.979;QD=5.60;ReadPosRankSum=0.189;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:488,114:0.19:602
chr20	29652083	rs66615221	C	T	4383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-5.145;QD=5.18;ReadPosRankSum=1.079;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:689,157:0.19:846
chr20	29652099	rs74613177	G	T	5081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DB;DP=1100;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-3.071;QD=4.71;ReadPosRankSum=1.139;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:877,201:0.19:1078
chr20	29652102	.	C	CT	5080.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DP=1141;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-4.417;QD=4.56;ReadPosRankSum=1.183;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:913,202:0.18:1115
chr20	29652105	rs76299428	T	C	6635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=1179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.062;QD=5.73;ReadPosRankSum=2.215;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:935,224:0.19:1159
chr20	29652107	rs62206782	T	G	6664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=1202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.222;QD=5.66;ReadPosRankSum=1.733;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:945,232:0.20:1177
chr20	29652172	rs78862124	T	C	42804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=1393;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-4.059;QD=30.97;ReadPosRankSum=0.449;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:296,1086:0.79:1382
chr20	29652172	.	TGGAGTGCCTCGGCAGCCT	CGGAGTGCCTCGGCAGCCT,CGGAGTGCCTTGGCAGCCG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=57;MMLQ=24;MQ=59.37;NF=703,105;NR=699,102;PP=2962,2934;QD=20;SC=AGGCGACCCATGGAGTGCCTC;SbPval=0.51;Source=Platypus;TC=1701;TCF=851;TCR=850;TR=1402,207;WE=29652204;WS=29652156;set=Platypus	GT:AF:DP	0/1:0.82:1701
chr20	29652173	rs79057885	G	A	6260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=1389;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=1.098;QD=4.55;ReadPosRankSum=-0.222;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:1140,235:0.17:1375
chr20	29652182	rs36076351	C	T	6358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=1359;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-1.425;QD=4.71;ReadPosRankSum=1.293;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:1114,236:0.17:1350
chr20	29652183	rs71276709	G	A	6194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=1336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=0.594;QD=4.68;ReadPosRankSum=0.306;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:1094,229:0.17:1323
chr20	29652190	rs76344754	T	G	6425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=1290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-1.080;QD=5.02;ReadPosRankSum=1.118;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:1052,228:0.18:1280
chr20	29652191	rs62206784	C	T	30261.77	.	AC=1;AF=0.500;AN=2;DB;DP=1281;set=Intersection	GT:AD:AF:DP	0/1:507,764:0.60:1271
chr20	29652236	rs62206786	G	C	18436.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:218,549:0.72:767
chr20	29652254	rs77357187	G	A	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-4.130;QD=3.29;ReadPosRankSum=0.508;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:406,128:0.24:534
chr20	29652260	rs77655567	C	T	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=0.352;QD=2.55;ReadPosRankSum=0.662;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:395,103:0.21:498
chr20	29652294	rs148337041	C	A	1159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.021;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-2.663;QD=4.50;ReadPosRankSum=0.252;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:196,62:0.24:258
chr20	29652303	rs62206787	T	C	3847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.962;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=5.700;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-7.952;QD=21.86;ReadPosRankSum=0.135;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:66,110:0.62:176
chr20	29847211	rs6088879	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr20	29965014	rs709045	T	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr20	29966275	rs2223527	G	A	8883.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr20	29966362	rs2206383	A	C	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	29977156	rs2295500	G	A	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:67,83:0.55:150
chr20	29978216	rs2206381	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	30037783	rs2273468	C	T	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:220,206:0.48:426
chr20	30053255	rs6059440	G	A	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,82:0.53:154
chr20	30060720	rs111977476	G	GCACACA	3732.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.037;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:252,127:0.34:379
chr20	30064331	rs1006459	A	G	14969.77	.	AC=1;AF=0.500;AN=2;DB;DP=1395;set=Intersection	GT:AD:AF:DP	0/1:672,717:0.52:1389
chr20	30071844	rs2233834	C	T	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:107,129:0.55:236
chr20	30102619	rs138291873	A	ACCT	21596.73	.	AC=1;AF=0.500;AN=2;DB;DP=1052;set=Intersection	GT:AD:AF:DP	0/1:441,552:0.56:993
chr20	30115140	rs34469982	CA	C	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=1.412;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:30,41:0.58:71
chr20	30142484	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-0.511;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr20	30147270	rs6059981	T	G	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:88,98:0.53:186
chr20	30147554	rs6058103	C	A	7423.77	.	AC=1;AF=0.500;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	0/1:347,343:0.50:690
chr20	30153934	rs2376862	A	G	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:52,77:0.60:129
chr20	30154237	rs11906851	G	C	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr20	30157026	rs4607	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr20	30193110	rs6060263	T	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr20	30193538	rs15817	A	G	4497.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:213,204:0.49:417
chr20	30194899	rs6058197	A	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr20	30195166	rs6088736	C	G	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr20	30226690	rs45557936	G	A	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:112,142:0.56:254
chr20	30226764	rs6088857	G	C	4084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.167;QD=13.22;ReadPosRankSum=-0.914;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:130,179:0.58:309
chr20	30227639	rs6088858	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr20	30232452	rs6120970	C	T	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:90,92:0.51:182
chr20	30232504	rs7269866	G	A	5289.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:204,253:0.55:457
chr20	30347832	rs6060930	A	G	4270.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:176,209:0.54:385
chr20	30354417	rs13044019	G	A	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:268,187:0.41:455
chr20	30354598	rs11299452	CT	C	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.774;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.269;QD=6.48;ReadPosRankSum=0.261;SOR=2.256;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr20	30363645	rs6060938	T	C	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr20	30363853	.	GTTTTTTTTTTTTTTTTTTTTTTT	G	1884	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=21;HapScore=1;MGOF=12;MMLQ=18;MQ=52.45;NF=0;NR=8;PP=1884;QD=235.875;SC=CTTGGTAGGTGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=25;TCF=0;TCR=25;TR=8;WE=30363883;WS=30363838;set=Platypus	GT:AD:AF:DP	1/0:17,8:0.32:25
chr20	30381758	rs1062794	G	C	2387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.871;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:92,113:0.55:205
chr20	30382108	rs6060952	T	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr20	30382315	rs3203770	A	G	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:159,154:0.49:313
chr20	30385192	rs6058463	C	T	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:96,117:0.55:213
chr20	30407213	rs1887731	T	C	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr20	30409584	rs35574032	G	C	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr20	30414578	rs11699351	G	A	5253.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:292,257:0.47:549
chr20	30419051	rs4518038	A	G	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:69,60:0.47:129
chr20	30421459	rs6089093	C	T	4975.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:230,243:0.51:473
chr20	30432954	rs41305797	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=0.077;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:357,49:0.12:406
chr20	30433139	rs6089096	G	A	6432.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:321,299:0.48:620
chr20	30433352	rs6121246	C	T	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:88,95:0.52:183
chr20	30436088	rs8118150	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=0.498;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr20	30437522	rs3746599	A	G	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:84,85:0.50:169
chr20	30449181	rs12569	G	A	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:99,96:0.49:195
chr20	30449325	rs947310	C	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:63,36:0.36:99
chr20	30452562	rs8124961	G	A	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:130,170:0.57:300
chr20	30452782	rs4911536	C	T	5705.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:273,278:0.50:551
chr20	30460700	rs73903669	G	C	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr20	30460869	rs6058475	T	C	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr20	30472021	rs138716259	ATTAT	A	1107.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr20	30507554	rs74399667	G	T	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:106,142:0.57:248
chr20	30507643	rs144893358	CT	C	11768.73	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:321,394:0.55:715
chr20	30521932	rs6089122	A	G	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:69,64:0.48:133
chr20	30525118	.	A	G	3965.77	.	AC=1;AF=0.500;AN=2;DP=372;set=Intersection	GT:AD:AF:DP	0/1:175,195:0.53:370
chr20	30527065	rs6061043	T	C	6589.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:293,316:0.52:609
chr20	30605976	.	AGGGGGCGGGGGCGGGGGAGGGGC	A	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.967;QD=24.67;ReadPosRankSum=-0.967;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr20	30661297	rs2297304	G	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:75,55:0.42:130
chr20	30681999	rs6121337	T	C	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr20	30729488	rs6089193	T	C	8600.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:390,385:0.50:775
chr20	30734785	.	C	CT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=1.429;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr20	30746248	rs6061195	T	C	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:117,142:0.55:259
chr20	30747679	rs4911553	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr20	30753270	rs14316	T	C	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:145,169:0.54:314
chr20	30777800	rs11907716	T	C	4012.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:205,201:0.50:406
chr20	30777860	rs11907235	A	G	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:103,100:0.49:203
chr20	30795819	rs1923095	T	C	6529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=1.977;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:367,329:0.47:696
chr20	30914706	rs3746606	C	T	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr20	30954295	rs2295454	A	G	5420.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:235,261:0.53:496
chr20	30959704	rs2424879	A	G	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:114,90:0.44:204
chr20	31016314	rs3818190	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr20	31019024	rs2295765	C	T	15138.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr20	31022959	rs6058694	T	C	10499.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr20	31024274	rs4911231	T	C	4513.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:204,195:0.49:399
chr20	31025163	rs2295764	A	G	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:120,123:0.51:243
chr20	31025231	rs2295763	T	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr20	31074372	rs6141734	G	A	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:81,91:0.53:172
chr20	31097877	rs293566	T	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr20	31099311	rs159428	T	C	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=1.992;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:78,63:0.45:141
chr20	31108805	rs6141745	T	A	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:91,95:0.51:186
chr20	31189411	rs2029086	A	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr20	31238139	rs35103329	G	A	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.818;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-1.059;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:47,43:0.48:90
chr20	31291161	rs9421	C	T	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	31291625	rs28620238	A	G	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:96,94:0.49:190
chr20	31291919	rs35093495	GGGCA	G	1363.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr20	31292298	rs59379723	CA	C	903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.593;QD=9.82;ReadPosRankSum=0.334;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:21,71:0.77:92
chr20	31294655	rs28548540	A	G	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	31315862	rs2064936	G	A	6001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.94;ReadPosRankSum=0.147;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:143,158:0.52:301
chr20	31315867	rs2064937	C	T	5898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.60;ReadPosRankSum=1.646;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:149,152:0.50:301
chr20	31369136	rs3835238	AC	A	4248.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:104,124:0.54:228
chr20	31374259	rs2424913	C	T	5966.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:268,267:0.50:535
chr20	31374520	rs2424914	A	G	5871.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:277,263:0.49:540
chr20	31374991	rs4911107	G	A	3565.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:156,159:0.50:315
chr20	31376490	rs4911260	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr20	31380309	rs1474738	G	A	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr20	31381229	rs993419	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr20	31383353	rs910085	T	G	3817.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:196,182:0.48:378
chr20	31383530	rs875041	C	T	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr20	31386347	rs6058891	T	C	5312.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:263,247:0.48:510
chr20	31386449	rs2424922	T	C	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:181,231:0.56:412
chr20	31387954	rs1997797	C	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr20	31388636	rs2424928	T	C	3996.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:165,187:0.53:352
chr20	31389009	rs2065576	C	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:52,72:0.58:124
chr20	31414020	.	CTTT	C	1085.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.712;QD=18.40;ReadPosRankSum=0.997;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:19,40:0.68:59
chr20	31427484	rs150424676	TTTTG	T	1096.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr20	31427635	rs2070090	C	T	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:185,143:0.44:328
chr20	31446645	rs853853	A	G	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:67,74:0.52:141
chr20	31446742	rs3746386	G	C	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:127,100:0.44:227
chr20	31466347	rs13037174	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr20	31466364	rs13037187	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr20	31466387	rs13037762	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr20	31466534	rs13037496	C	T	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:181,140:0.44:321
chr20	31473483	rs6119300	G	C	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	31480052	rs62208904	G	C	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:139,161:0.54:300
chr20	31480936	rs62208906	C	T	3580.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:157,164:0.51:321
chr20	31480938	rs2377733	C	T	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:169,164:0.49:333
chr20	31480961	rs2377734	C	T	11454.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr20	31484417	rs11167186	T	A	5689.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:316,271:0.46:587
chr20	31486206	rs6058948	A	G	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	31494382	rs6120033	G	A	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr20	31494915	rs57106662	G	C	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:148,155:0.51:303
chr20	31495977	rs17370942	C	T	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:115,100:0.47:215
chr20	31505292	rs13037781	C	T	34745.77	.	AC=2;AF=1.00;AN=2;DB;DP=1278;set=Intersection	GT:AD:AF:DP	1/1:0,1266:1.00:1266
chr20	31531544	rs13045180	C	T	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:236,202:0.46:438
chr20	31549424	rs11167189	G	A	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:168,139:0.45:307
chr20	31571485	rs6087436	C	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr20	31573528	rs2274343	A	C	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:85,92:0.52:177
chr20	31573769	rs13040459	T	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr20	31577394	rs6058991	G	A	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:116,117:0.50:233
chr20	31577572	rs6088057	C	T	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:121,114:0.49:235
chr20	31577582	rs141745544	CAG	C	3612.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:96,98:0.51:194
chr20	31583384	rs2070310	A	G	4539.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:214,209:0.49:423
chr20	31583966	rs2070311	T	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr20	31584178	rs6141862	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:115,92:0.44:207
chr20	31585351	rs452299	C	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr20	31585415	rs190097	T	C	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:87,117:0.57:204
chr20	31585545	rs440139	C	T	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:143,129:0.47:272
chr20	31587752	rs414191	G	C	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:187,130:0.41:317
chr20	31587793	rs15850	A	G	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:212,165:0.44:377
chr20	31590686	rs1133358	C	A	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:107,95:0.47:202
chr20	31598781	rs6120085	T	C	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:172,161:0.48:333
chr20	31598994	rs6141358	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr20	31603405	rs35897534	TAA	T	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=8.916;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.038;QD=10.69;ReadPosRankSum=2.691;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr20	31606237	rs3746388	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr20	31607654	rs45626037	T	C	5157.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:234,239:0.51:473
chr20	31608250	rs6057703	C	A	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:351,265:0.43:616
chr20	31609246	rs62207506	G	A	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:91,133:0.59:224
chr20	31609433	rs13043556	T	C	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:77,73:0.49:150
chr20	31609526	rs200269988	C	T	6098.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:213,288:0.57:501
chr20	31609581	rs17124003	C	T	4297.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:344,220:0.39:564
chr20	31611380	rs45556839	C	T	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.542;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:49,60:0.55:109
chr20	31619357	rs4911286	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr20	31619578	rs6059027	A	G	4419.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:169,214:0.56:383
chr20	31619724	rs2070312	A	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr20	31621564	rs2070315	C	T	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:64,101:0.61:165
chr20	31621583	rs2070316	G	A	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr20	31622083	rs2070317	G	A	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:127,144:0.53:271
chr20	31622768	rs6059032	C	A	13639.77	.	AC=1;AF=0.500;AN=2;DB;DP=1247;set=Intersection	GT:AD:AF:DP	0/1:603,636:0.51:1239
chr20	31622839	rs6059033	T	C	19796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.652;ClippingRankSum=0.000;DB;DP=1598;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=0.406;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:756,836:0.53:1592
chr20	31624368	rs6059035	C	T	7607.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:333,365:0.52:698
chr20	31626558	rs6088078	G	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:72,70:0.49:142
chr20	31626621	rs6057708	C	T	4541.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:186,187:0.50:373
chr20	31627291	rs4911287	A	G	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:74,77:0.51:151
chr20	31629911	rs2070319	G	A	4807.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:184,197:0.52:381
chr20	31643511	rs384430	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr20	31644520	rs408538	T	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:61,75:0.55:136
chr20	31647126	rs6088082	C	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr20	31647864	rs6088084	C	A	6627.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:334,313:0.48:647
chr20	31647935	rs2424936	G	T	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:175,120:0.41:295
chr20	31649781	rs398444	T	C	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:97,97:0.50:194
chr20	31651583	rs403461	A	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	31652292	rs4911290	G	A	4942.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:263,247:0.48:510
chr20	31656632	rs6057717	C	G	11583.77	.	AC=1;AF=0.500;AN=2;DB;DP=1087;set=Intersection	GT:AD:AF:DP	0/1:549,534:0.49:1083
chr20	31656837	rs2424938	G	A	8025.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr20	31660489	rs11700200	T	C	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:224,208:0.48:432
chr20	31661650	rs7267265	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr20	31671209	rs13036385	G	C	5043.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:241,232:0.49:473
chr20	31671599	rs4339026	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr20	31671663	rs2424945	T	C	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:74,66:0.47:140
chr20	31671693	rs3926669	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chr20	31671766	rs1547004	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr20	31673846	rs2070325	A	G	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:193,186:0.49:379
chr20	31676622	rs2424949	G	T	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:73,96:0.57:169
chr20	31676804	rs2889732	A	C	9585.77	.	AC=1;AF=0.500;AN=2;DB;DP=962;set=Intersection	GT:AD:AF:DP	0/1:495,462:0.48:957
chr20	31677476	rs6057722	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:58,55:0.49:113
chr20	31678534	rs2070326	T	C	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:213,156:0.42:369
chr20	31680234	rs2070327	C	T	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:103,96:0.48:199
chr20	31680334	rs17122711	C	T	5419.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:253,254:0.50:507
chr20	31682778	rs2024934	C	A	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr20	31685405	rs13041016	C	T	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr20	31688241	rs11699009	T	C	8463.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr20	31688260	rs11696307	C	T	7946.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr20	31688330	rs11696310	C	T	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	31695484	rs112961921	G	C	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:175,194:0.53:369
chr20	31757202	rs76950763	T	C	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:83,80:0.49:163
chr20	31760708	rs6579083	G	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr20	31767237	rs11407628	G	GA	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.400;QD=2.56;ReadPosRankSum=-0.035;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:70,28:0.29:98
chr20	31768145	rs747136	A	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr20	31768363	rs34968847	C	T	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-1.672;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:101,102:0.50:203
chr20	31811551	rs725914	C	T	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:79,106:0.57:185
chr20	31812923	rs3818222	G	A	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:171,155:0.48:326
chr20	31814348	rs1570033	G	A	11711.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr20	31825436	rs58831055	A	AG	2528.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:97,93:0.49:190
chr20	31826027	rs6059183	T	C	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:107,119:0.53:226
chr20	31826088	rs36225274	GGCAGTGACCCTGAA	G	1821.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr20	31826130	rs6141898	G	T	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.127;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=2.167;QD=14.98;ReadPosRankSum=-1.474;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:24,40:0.62:64
chr20	31827439	rs6141899	A	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr20	31828254	rs6059186	T	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:104,79:0.43:183
chr20	31828265	rs6059187	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,66:0.46:145
chr20	31828336	.	A	AGATG	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=5.959;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-1.228;QD=11.62;ReadPosRankSum=-0.550;SOR=2.876;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr20	31873821	rs3746393	C	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr20	31876485	rs2295576	T	C	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	31876681	rs1078761	A	G	13210.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr20	31877565	rs1078944	C	T	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr20	31877898	rs1884885	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr20	31886782	rs35028429	C	CT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.57;ReadPosRankSum=1.672;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:129,32:0.20:161
chr20	31954535	rs111360441	G	A	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:81,77:0.49:158
chr20	31954819	rs368904466	TA	T	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.861;QD=0.96;ReadPosRankSum=-0.437;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:231,62:0.21:293
chr20	31954890	rs291674	C	G	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	31960719	rs11291803	CT	C	372.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-2.018;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr20	31961860	rs291676	T	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr20	31981849	rs291700	T	C	16689.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr20	31981970	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.167;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:59,16:0.21:75
chr20	32000351	rs291694	A	G	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr20	32077925	rs75667555	C	T	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.180;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr20	32207238	.	T	TA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.622;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr20	32211760	.	G	GA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=2.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.292;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr20	32212690	rs3803939	C	T	3603.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:207,167:0.45:374
chr20	32245546	rs13037669	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	32245869	rs3746461	C	G	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr20	32248281	rs17124895	C	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr20	32251470	.	AGCGAGC	A	4972.73	.	AC=1;AF=0.500;AN=2;DP=303;set=Intersection	GT:AD:AF:DP	0/1:140,135:0.49:275
chr20	32255233	rs3746459	T	C	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr20	32295541	rs910397	C	T	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:123,93:0.43:216
chr20	32298323	rs2626529	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr20	32319894	rs2281402	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=2.665;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr20	32328968	rs6087514	G	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr20	32376884	rs74829766	CT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.520;QD=1.36;ReadPosRankSum=-0.743;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr20	32378732	rs2747565	G	A	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:192,132:0.41:324
chr20	32379263	rs2626551	T	C	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr20	32664864	rs10649600	C	CCAG	6525.73	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:281,175:0.38:456
chr20	32691516	.	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.957;QD=2.11;ReadPosRankSum=-1.012;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr20	32891200	rs819146	G	T	8860.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr20	33033065	rs11482470	G	GT	503.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.682;QD=10.72;ReadPosRankSum=0.194;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chr20	33037336	rs3736762	C	T	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	33053985	rs11480899	A	AT	581.74	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr20	33057954	rs6059856	G	C	18632.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr20	33057974	rs10716089	CT	C	18214.73	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr20	33059478	rs10606931	GGTGTGTGT	G,GGTGT	2323.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;QD=39.39;SOR=3.830;set=HC	GT:AD:AF:DP	1/2:0,42,17:0.71,0.29:59
chr20	33068563	rs6059861	A	T	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	33104592	rs2424993	G	C	13724.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr20	33147737	rs6059915	C	G	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	33148861	rs6059916	T	G	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr20	33150503	rs6059918	C	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	33297810	rs369052205	G	GC,GCC	1096.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AF:DP	1/2:0.70,0.30:27
chr20	33297811	rs2378257	A	C	1186.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	33326876	rs6060025	A	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr20	33334540	rs910872	T	C	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	33334734	rs11484299	T	TA	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.100;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:49,29:0.37:78
chr20	33337751	rs3787220	T	C	17239.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr20	33338114	rs61736332	G	A	4002.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:167,182:0.52:349
chr20	33338325	.	T	TA	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=2.260;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.688;QD=1.60;ReadPosRankSum=-0.749;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr20	33342439	rs1884432	T	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	33342477	rs6087625	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr20	33345747	rs41290900	T	C	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:212,161:0.43:373
chr20	33346556	rs11468960	ATC	A	1306.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr20	33356511	rs2295353	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr20	33364584	rs6060043	C	T	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	33364655	rs6120723	C	T	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.284;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:52,46:0.47:98
chr20	33370266	rs6060048	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr20	33370344	rs71349774	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr20	33470694	rs4911163	C	T	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:273,213:0.44:486
chr20	33496667	.	G	GA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.994;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=3.264;QD=2.30;ReadPosRankSum=0.427;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:63,25:0.28:88
chr20	33500245	rs3787214	C	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr20	33500378	rs2378294	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr20	33507379	rs60692848	AGTGT	A	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.81;ReadPosRankSum=-0.970;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr20	33509275	rs3818273	G	A	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:190,176:0.48:366
chr20	33509523	rs2273683	C	T	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr20	33533736	rs734111	A	C	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:102,83:0.45:185
chr20	33572941	rs2425007	A	G	12742.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:2,449:1.00:451
chr20	33572979	rs3746448	C	T	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:167,134:0.45:301
chr20	33574022	rs2425008	G	C	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	33574765	rs3746446	T	C	10950.77	.	AC=1;AF=0.500;AN=2;DB;DP=1301;set=Intersection	GT:AD:AF:DP	0/1:733,563:0.43:1296
chr20	33575347	rs3053708	C	CAT	9373.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr20	33578251	rs3746444	A	G	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:152,183:0.55:335
chr20	33578899	rs2425009	T	C	9992.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr20	33581889	rs7268266	T	C	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:187,195:0.51:382
chr20	33581955	rs2425012	G	A	8247.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:379,393:0.51:772
chr20	33583033	rs10536288	CAAA	C	1092.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	33583037	rs61501849	C	G	1101.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	33583114	rs2425014	T	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	33583331	rs2425015	A	G	13869.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr20	33584197	rs61745051	C	T	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:123,128:0.51:251
chr20	33584289	rs3746438	C	T	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:155,135:0.47:290
chr20	33584304	rs41312284	G	A	5326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=-0.117;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:129,147:0.53:276
chr20	33584310	rs41310801	G	A	5269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.96;ReadPosRankSum=1.669;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:128,136:0.52:264
chr20	33584822	rs11167250	T	TG	731.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.49;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	33584864	rs11167251	C	CT	1374.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	33586193	rs3746436	C	T	5543.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:317,268:0.46:585
chr20	33587198	rs3746435	G	C	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:118,87:0.42:205
chr20	33587553	rs369393561	TCC	T	991.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr20	33587563	rs200141778	CCA	C	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=44.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-3.012;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:82,45:0.35:127
chr20	33588698	rs67885143	TGAGGCTGGGCAAGGGCTGTGGG	T	3169.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:112,90:0.45:202
chr20	33589107	rs36003887	G	A	4953.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:248,231:0.48:479
chr20	33590096	rs4911167	A	G	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	33591197	rs11481073	A	AG	16438.73	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr20	33592248	rs752448	C	T	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:180,158:0.47:338
chr20	33592474	rs752449	A	G	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	33593457	rs3746431	T	C	13321.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr20	33593674	rs3746430	T	C	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	33594226	rs6060151	G	T	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr20	33595300	rs2273636	C	T	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	33595525	rs13045538	T	C	5015.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:144,211:0.59:355
chr20	33600740	rs1885117	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr20	33604042	rs3736802	T	C	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:94,96:0.51:190
chr20	33632203	rs11483863	G	GA	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.452;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr20	33632600	rs3803938	C	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	33637606	rs2281626	T	G	14009.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr20	33642732	rs4911462	G	T	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	33642737	rs4911463	G	A	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	33657126	rs1998233	G	A	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	33703607	rs3746429	C	T	5852.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:340,288:0.46:628
chr20	33706187	rs6088722	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	33711624	rs6120838	T	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	33713963	rs2295885	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	33713975	rs2295886	A	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	33714187	rs2295887	G	A	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr20	33730387	rs6120849	C	T	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr20	33734905	rs945959	G	C	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:207,182:0.47:389
chr20	33762489	rs2069948	C	T	6577.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:398,321:0.45:719
chr20	33763951	rs2069952	C	T	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:209,190:0.48:399
chr20	33764632	rs9574	C	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,62:0.50:125
chr20	33834708	rs3764733	G	A	3450.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:203,174:0.46:377
chr20	33859675	rs11696548	C	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr20	33867697	rs619865	A	G	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	33874358	.	G	A	2191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.206;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:376,141:0.27:517
chr20	33894463	rs878639	A	G	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	33896757	rs8117705	G	C	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	33972451	.	TAA	T	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.147;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr20	34022387	rs224331	A	C	10724.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr20	34025756	rs143384	A	G	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	34054609	rs224354	G	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	34054729	rs2296402	T	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	34055453	rs5841213	AG	A	2374.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	34057799	rs41290918	A	G	4862.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:234,239:0.51:473
chr20	34061578	rs224361	T	C	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	34062642	rs224362	C	T	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr20	34062710	rs224363	C	T	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr20	34064478	rs57616316	C	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr20	34079200	rs224373	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	34096725	rs2236165	A	G	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	34099165	rs72173955	CT	C	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.159;QD=1.89;ReadPosRankSum=0.042;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:223,107:0.32:330
chr20	34116282	rs7261862	T	C	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:159,209:0.57:368
chr20	34131396	rs12481365	C	T	7470.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:262,353:0.57:615
chr20	34136791	rs45563939	C	T	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:123,107:0.47:230
chr20	34142257	rs60267524	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr20	34142287	rs17092784	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr20	34142670	rs73283830	T	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr20	34144107	rs224420	T	C	7159.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr20	34144746	rs8825	A	G	6487.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:350,301:0.46:651
chr20	34146755	rs117085232	G	A	8709.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:259,238:0.48:497
chr20	34146779	rs8120157	T	C	8981.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:288,250:0.46:538
chr20	34147998	rs224424	A	G	32428.77	.	AC=2;AF=1.00;AN=2;DB;DP=909;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,907:1.00:907
chr20	34147998	.	AGAC	GGAC,GGAT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=439,217;NR=440,219;PP=2962,2944;QD=20;SC=GACCTGCGCCAGACGCTCACC;SbPval=0.5;Source=Platypus;TC=883;TCF=442;TCR=441;TR=879,436;WE=34148009;WS=34147988;set=Platypus	GT:AF:DP	0/1:1.00:883
chr20	34148001	rs2145021	C	T	9858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=0.262;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:445,463:0.51:908
chr20	34148322	rs41293076	T	G	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:204,199:0.49:403
chr20	34148488	rs8115363	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:71,69:0.49:140
chr20	34152684	rs55799727	C	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,70:0.49:142
chr20	34152782	rs2277862	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr20	34153341	rs224430	C	T	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	34164422	rs1557202	T	C	11291.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr20	34164463	rs1557203	A	G	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:190,196:0.51:386
chr20	34167382	rs8116470	G	A	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:154,222:0.59:376
chr20	34167519	rs55689504	G	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr20	34167552	rs56402832	T	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr20	34169971	rs55804447	T	C	7535.77	.	AC=1;AF=0.500;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	0/1:460,379:0.45:839
chr20	34170035	rs6060486	C	G	18031.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,684:1.00:684
chr20	34170316	rs6060487	C	A	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	34171324	rs6088887	G	A	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr20	34173178	rs6060488	A	G	7823.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:382,372:0.49:754
chr20	34205035	rs11698601	G	A	2698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.360;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:129,132:0.51:261
chr20	34205389	rs3841688	G	GC	1946.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	34207062	rs149341858	CCCCGACT	C	9098.73	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:193,239:0.55:432
chr20	34208516	rs2425067	C	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=25.29;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	34208548	rs10668654	G	GCC	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.793;QD=3.51;ReadPosRankSum=-1.668;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr20	34214368	rs6060516	T	C	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr20	34215109	.	C	CAAAAAA,CAAAAAAAAAA	269.77	.	AC=2,0;AF=1.00,0.00;AN=2;DP=24;set=Intersection	GT:AF:DP	1/1:1.00:5
chr20	34215234	rs147019139	C	CA	3038.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:86,123:0.59:209
chr20	34218673	rs12481228	G	C	5192.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:194,240:0.55:434
chr20	34219496	rs6579255	T	C	16450.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:1,614:1.00:615
chr20	34219987	rs61191623	A	C	62652.77	.	AC=2;AF=1.00;AN=2;DB;DP=1371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.97;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,1363:1.00:1363
chr20	34219990	rs78084033	A	C	63927.77	.	AC=2;AF=1.00;AN=2;DB;DP=1401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.89;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,1393:1.00:1393
chr20	34219994	rs10211771	T	C	63745.77	.	AC=2;AF=1.00;AN=2;DB;DP=1442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:0,1434:1.00:1434
chr20	34240686	rs74880624	T	C	3967.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:231,192:0.45:423
chr20	34243017	rs6121015	C	T	26734.77	.	AC=2;AF=1.00;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	1/1:0,950:1.00:950
chr20	34247060	.	CAA	C,CA	2596.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;MQRankSum=0.454;QD=12.48;ReadPosRankSum=2.754;SOR=0.686;set=HC	GT:AD:AF:DP	1/2:31,55,122:0.26,0.59:208
chr20	34268874	rs3056722	T	TCCA	3843.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	34280309	rs7347735	A	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-2.098;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr20	34280353	rs118055036	GG	AA	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.621;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.76;ReadPosRankSum=0.211;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr20	34285522	rs73281027	T	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr20	34286251	rs56116518	G	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr20	34286315	rs7273637	A	T	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:94,97:0.51:191
chr20	34295249	rs2425076	C	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr20	34302402	rs2425085	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr20	34304616	.	TA	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.455;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr20	34304783	rs2425090	C	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	34307950	rs59064961	T	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	34309643	rs2425099	T	C	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:101,107:0.51:208
chr20	34312658	rs11696947	A	G	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:225,259:0.54:484
chr20	34312713	rs11699044	C	T	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:107,128:0.54:235
chr20	34317190	rs78058415	G	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr20	34320202	rs11479445	TA	T	470.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-1.319;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr20	34324352	.	C	CA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.46;ReadPosRankSum=-0.263;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr20	34324456	rs2425120	A	T	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	34324484	rs6058312	A	C	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	34327159	rs1056196	T	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr20	34328274	rs1538426	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,62:0.50:123
chr20	34328848	rs2425122	C	T	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr20	34328962	.	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=-0.605;QD=8.07;ReadPosRankSum=1.082;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr20	34435246	rs143955363	C	CT	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=2.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=1.943;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:288,67:0.19:355
chr20	34443173	rs2425171	G	C	7239.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:319,333:0.51:652
chr20	34446395	rs2425178	A	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr20	34457513	rs6121073	G	A	9369.77	.	AC=1;AF=0.500;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	0/1:416,454:0.52:870
chr20	34459814	rs11308881	TA	T	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-1.307;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr20	34502107	rs17431878	G	A	6098.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:301,290:0.49:591
chr20	34535373	rs6088971	T	C	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:111,107:0.49:218
chr20	34542365	rs35448195	C	G	5493.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:214,246:0.53:460
chr20	34560526	rs11167280	G	A	4754.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:189,219:0.54:408
chr20	34568262	rs10627329	C	CAT	1140.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr20	34571846	rs6058388	T	C	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr20	34572834	rs6141583	G	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:103,107:0.51:210
chr20	34596371	rs6060750	C	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:79,80:0.50:159
chr20	34611450	rs11477706	GA	G	1108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.508;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:60,64:0.52:124
chr20	34775551	rs2247688	A	G	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:181,158:0.47:339
chr20	34776503	.	A	AACACACACAC	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-0.674;QD=20.18;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr20	34797634	rs142447348	C	T	4020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=2.037;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:246,201:0.45:447
chr20	34828609	rs709050	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,23:0.30:77
chr20	34832601	rs35283785	CCT	C	4325.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:97,116:0.54:213
chr20	34858360	rs2425206	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr20	35064912	rs1275393	G	A	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr20	35068018	rs1275396	A	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	35090820	rs1275391	C	G	12156.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr20	35127613	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=384;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.096;QD=0.13;ReadPosRankSum=2.262;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:284,49:0.15:333
chr20	35383062	rs77802176	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr20	35422936	rs35707272	G	T	4560.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:212,204:0.49:416
chr20	35436758	.	GA	G	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.379;QD=3.01;ReadPosRankSum=0.703;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:45,28:0.38:73
chr20	35445890	rs368000406	TA	T	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.320;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr20	35467713	rs1146250	G	A	4615.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:230,224:0.49:454
chr20	35491033	rs1291099	A	G	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:89,84:0.49:173
chr20	35491551	rs6029806	A	G	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	35507542	rs3748459	G	A	18428.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,684:1.00:684
chr20	35507621	rs3748461	G	A	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr20	35508931	rs116897774	C	T	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr20	35555717	.	C	CT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.375;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr20	35569619	rs6030312	G	T	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	35632028	.	GA	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=3.660;QD=0.49;ReadPosRankSum=0.254;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr20	35672436	rs200990142	GT	G	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=1.366;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:85,32:0.27:117
chr20	35684754	.	C	CT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.912;QD=6.43;ReadPosRankSum=0.506;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr20	35695535	rs371434822	GA	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.649;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.653;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:95,28:0.23:123
chr20	35710283	rs62206488	A	T	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	35710453	rs1892205	T	C	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	35738841	rs1744759	G	C	7667.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr20	35748039	rs138010782	G	GAAAGA	6925.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.94;MQRankSum=0.354;QD=48.77;ReadPosRankSum=-0.293;SOR=0.623;set=HC	GT:AD:AF:DP	1/1:1,141:0.99:142
chr20	35748894	rs1624888	C	G	10793.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr20	35749079	rs8120336	T	A	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	35766102	rs16986445	G	A	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	35766337	rs8115854	A	G	10303.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr20	35769592	rs1744769	T	C	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr20	35786188	rs1780687	A	C	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	35807790	rs11467214	G	GCTTATAGACAGGGCCCCGCGGCCGGCACT	3323.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	35812526	rs16986470	C	A	9380.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:2,352:0.99:354
chr20	35826683	rs2076399	T	G	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	35827028	rs146714866	A	ATT	1401.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.82;SOR=3.855;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	35827682	rs2076398	G	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr20	35828696	rs6032013	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	35828757	.	ATT	A	2753.73	.	AC=2;AF=1.00;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	1/1:5,94:0.95:99
chr20	35835657	rs11698281	C	T	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	35835889	rs1079657	A	G	10787.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr20	35838372	rs2272950	T	A	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	35838591	rs2050091	T	C	8958.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr20	35838756	rs3817885	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	35852395	rs2076397	A	C	6956.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr20	35852450	rs2076396	G	C	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr20	35856955	rs144146477	A	G	4387.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:237,222:0.48:459
chr20	35865054	rs4608	C	T	12558.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr20	35869619	rs2050093	C	T	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	36030939	rs1885257	G	C	7029.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr20	36031097	rs2145792	A	G	10651.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr20	36150582	rs149299117	C	CA	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.232;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr20	36150594	rs2344098	T	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.397;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr20	36150600	rs5841264	T	TA	1646.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.44;QD=31.67;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	36375071	rs2297154	T	C	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	36488508	rs3833308	TCTCA	T	7601.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr20	36488911	rs1474623	G	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	36500313	rs717599	C	A	5963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=0.513;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:392,318:0.45:710
chr20	36572310	rs11365082	AC	A	978.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=4.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=1.708;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:54,50:0.48:104
chr20	36640870	rs36059660	C	T	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:163,136:0.45:299
chr20	36685915	rs2256288	T	C	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=4.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=0.070;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:121,98:0.45:219
chr20	36793501	rs2067027	A	G	12766.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:1,465:1.00:466
chr20	36841756	rs1534967	T	C	5953.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:274,282:0.51:556
chr20	36841914	rs3746471	G	A	5544.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:214,248:0.54:462
chr20	36845738	rs760998	C	T	2612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-0.647;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:108,132:0.55:240
chr20	36847955	rs150069956	C	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr20	36855620	.	C	T	3917.77	.	AC=1;AF=0.500;AN=2;DP=393;set=Intersection	GT:AD:AF:DP	0/1:206,186:0.47:392
chr20	36859711	rs1205418	G	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr20	36868191	rs1205433	C	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,73:0.52:140
chr20	36869516	rs1205434	C	A	4537.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:144,184:0.56:328
chr20	36870122	rs1205435	T	G	4267.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:188,201:0.52:389
chr20	36919616	rs6014601	G	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr20	36919885	rs45589832	G	A	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr20	36932551	rs1341022	G	C	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:166,112:0.40:278
chr20	36932660	rs1341023	C	T	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:120,118:0.50:238
chr20	36932676	rs1341024	G	C	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:107,99:0.48:206
chr20	36937246	rs2066252	G	A	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,69:0.47:147
chr20	36946848	rs4358188	G	A	7539.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr20	36953097	rs5741806	C	T	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:145,131:0.47:276
chr20	36959318	rs5743533	G	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,63:0.57:111
chr20	36959353	rs5743534	A	G	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:92,111:0.55:203
chr20	36959566	rs2425357	A	G	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	36959732	rs6127771	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr20	36965617	rs1131847	A	G	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:96,103:0.52:199
chr20	36989269	rs1780623	C	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr20	36989302	rs1780624	C	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:52,75:0.59:127
chr20	36989381	rs2232596	G	A	3497.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:128,160:0.56:288
chr20	37055875	rs707578	T	C	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	37062583	rs788347	T	C	12800.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr20	37146131	.	C	CT	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.747;QD=0.89;ReadPosRankSum=0.340;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:246,54:0.18:300
chr20	37182812	rs202236409	T	TA	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=6.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.099;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr20	37187110	rs36061549	AT	A	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.974;QD=0.74;ReadPosRankSum=-1.052;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:124,29:0.19:153
chr20	37230486	rs6070740	C	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	37272589	rs419162	G	A	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr20	37274559	rs11426603	C	CA	2078.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:146,88:0.38:234
chr20	37274861	rs117796	A	G	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,48:0.47:103
chr20	37277153	rs220527	G	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:39,66:0.63:105
chr20	37277271	rs220526	C	T	1715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.805;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:99,85:0.46:184
chr20	37278612	rs220522	T	A	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:71,66:0.48:137
chr20	37278823	rs220521	T	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr20	37278946	rs220520	T	C	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:145,165:0.53:310
chr20	37279255	rs220519	C	T	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:101,105:0.51:206
chr20	37377139	rs2254105	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr20	37378982	rs67064795	A	AGT	3316.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:85,86:0.50:171
chr20	37383517	rs2757520	C	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr20	37383640	rs2748663	T	C	6010.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:294,297:0.50:591
chr20	37383841	rs2757521	C	T	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr20	37394795	rs3215704	AT	A	1685.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	37395112	rs2243520	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr20	37396120	rs2245231	A	G	11777.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr20	37396262	rs2245237	A	G	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:108,119:0.52:227
chr20	37400490	rs6128952	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr20	37534582	rs12626105	A	G	8620.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr20	37534665	rs4812332	C	T	7829.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr20	37547374	rs4812336	G	A	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	37555116	rs3752290	G	C	11002.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr20	37570725	rs3752293	C	T	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr20	37580130	rs4300896	A	C	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	37590835	rs79439920	G	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr20	37591184	rs974561	G	C	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr20	37591198	rs974560	C	T	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	37601243	rs16987712	A	G	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:97,121:0.56:218
chr20	37620888	rs4812348	G	C	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr20	37621180	rs68173814	A	G	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:56,69:0.55:125
chr20	37630606	rs3764701	A	T	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr20	37634664	rs4812351	T	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr20	37634704	rs3829696	T	C	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr20	37635027	rs3752298	T	C	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.55;SOR=4.752;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	37635027	.	TG	CC,CG	916	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.11;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=5,6;NR=28,70;PP=661,916;QD=21.6505416625;SC=TAAGGGTTTTTGACTTTCTTA;SbPval=0.13;Source=Platypus;TC=76;TCF=6;TCR=70;TR=33,76;WE=37635036;WS=37635017;set=Platypus	GT:AF:DP	0/1:0.43:76
chr20	37635028	rs79495439	G	C	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.045;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=10.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-2.599;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:41,36:0.47:77
chr20	37643659	rs3764703	T	C	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr20	37654024	rs3752301	T	G	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:142,136:0.49:278
chr20	37662835	rs3834993	CT	C	4684.73	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:163,161:0.50:324
chr20	37663062	rs80042855	C	T	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:88,89:0.50:177
chr20	37667182	rs3752302	C	T	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:133,120:0.47:253
chr20	39609426	rs4812473	C	T	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	39742519	.	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.055;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr20	39801204	.	C	T	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.481;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:369,71:0.16:440
chr20	40116207	rs3092194	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr20	40714479	rs2016647	G	A	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	40714524	rs722898	C	G	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.78;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	40714539	rs1569547	C	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	40733082	rs2076247	C	T	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr20	40743829	rs2076248	A	G	6529.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	40863182	rs6030076	C	A	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	40979160	rs2071854	T	C	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr20	40979430	rs929071	C	T	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	41077028	rs41279246	G	A	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:102,67:0.40:169
chr20	41306488	rs111229158	G	GA,GAA	906.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;MQRankSum=0.572;QD=18.13;ReadPosRankSum=0.691;SOR=0.638;set=HC	GT:AD:AF:DP	1/2:6,22,22:0.44,0.44:50
chr20	41306600	rs2425516	A	G	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr20	41514690	.	C	CAT	824.73	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr20	41818289	rs2867655	C	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	42089140	rs34934568	T	A	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	42089511	rs2235611	T	C	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr20	42163768	rs2071968	C	G	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	42199704	.	GGTGTGT	G,GGT	3802.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=115;set=Intersection	GT:AF:DP	1/2:0.31,0.69:100
chr20	42199925	rs3127060	G	A	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	42205061	rs763227	G	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	42208522	rs2301483	T	G	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	42225114	rs2664519	G	A	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	42242700	rs4473450	C	T	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr20	42249398	rs1555348	C	T	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	42249479	rs11483104	C	CT	4856.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.402;QD=19.50;ReadPosRankSum=-0.486;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:18,231:0.93:249
chr20	42264502	rs6031007	G	A	8121.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr20	42264726	rs2273523	T	C	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	42265700	rs6065638	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	42265966	rs6031008	G	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	42275499	rs393115	G	T	6826.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr20	42302201	rs826949	C	T	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	42302371	rs826950	C	T	12220.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr20	42310509	rs442143	T	C	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	42328639	rs285162	T	C	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	42328749	rs285163	A	G	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	42574442	rs4812769	T	C	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-0.407;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:47,57:0.55:104
chr20	42694558	rs199841880	C	CCCG	6115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DB;DP=801;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.410;QD=8.23;ReadPosRankSum=-2.086;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:439,304:0.41:743
chr20	42745115	rs6073336	T	G	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=5.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=1.859;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:44,46:0.51:90
chr20	42806429	rs2064381	A	T	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.658;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=5.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.043;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:65,45:0.41:110
chr20	42814931	rs6031442	T	C	1457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.755;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=20.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-2.269;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:154,71:0.32:225
chr20	42815190	rs1883790	G	A	9000.77	.	AC=1;AF=0.500;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	0/1:417,434:0.51:851
chr20	42939693	rs148377517	C	T	9673.77	.	AC=1;AF=0.500;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	0/1:359,459:0.56:818
chr20	42939750	rs6073401	T	C	34192.77	.	AC=2;AF=1.00;AN=2;DB;DP=1258;set=Intersection	GT:AD:AF:DP	1/1:0,1256:1.00:1256
chr20	42965841	rs11699901	T	G	6063.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:217,266:0.55:483
chr20	42966025	rs1884612	T	C	7579.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:353,368:0.51:721
chr20	42969798	rs3761184	A	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr20	42972275	rs4812826	G	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr20	42973935	rs11697359	T	C	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:109,119:0.52:228
chr20	42979444	rs11699154	G	A	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:86,107:0.55:193
chr20	42979553	rs11699172	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr20	43034660	rs736824	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr20	43042364	rs1800961	C	T	6933.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:457,364:0.44:821
chr20	43047230	.	A	G	1168.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr20	43052570	rs2273618	T	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr20	43058018	rs3746574	T	C	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr20	43058096	rs3746575	C	G	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:158,124:0.44:282
chr20	43254490	rs244074	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	43264927	rs394105	C	T	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	43343895	rs376618937	TGTGTGTGAGC	T	933.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr20	43343903	rs1980801	A	T	246.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.526;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.190;MLEAC=1;MLEAF=0.500;MQ=62.97;MQRankSum=-1.292;QD=7.05;ReadPosRankSum=0.723;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr20	43343905	rs1980802	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.190;MLEAC=1;MLEAF=0.500;MQ=62.97;MQRankSum=-1.292;QD=7.05;ReadPosRankSum=0.346;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr20	43343908	rs1980803	G	A	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	43343930	rs1980804	T	G	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	43348735	rs2296530	C	A	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:212,174:0.45:386
chr20	43356156	rs1061098	C	T	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,68:0.46:147
chr20	43374839	rs3834659	GC	G	1875.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr20	43378770	rs1111032	A	G	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr20	43379147	.	G	A	11409.77	.	AC=1;AF=0.500;AN=2;DP=1057;set=Intersection	GT:AD:AF:DP	0/1:484,567:0.54:1051
chr20	43379264	rs6073538	A	C	12840.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.15;SOR=1.588;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr20	43379264	.	ACCCC	CCCCA,CCCCC	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=6;HapScore=2;MGOF=7;MMLQ=24;MQ=59.83;NF=81,129;NR=109,202;PP=2944,2644;QD=20;SC=CGCTGCCCGCACCCCCAGCCC;SbPval=0.34;Source=Platypus;TC=333;TCF=130;TCR=203;TR=190,331;WE=43379276;WS=43379254;set=Platypus	GT:AF:DP	0/1:0.57:333
chr20	43379268	rs13037900	C	A	4766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.784;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=51.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-0.142;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:116,211:0.65:327
chr20	43379454	rs13042905	T	C	9358.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr20	43530234	rs4931	A	C	3659.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:134,170:0.56:304
chr20	43534903	rs16989481	G	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,43:0.50:86
chr20	43535158	.	AAAAAAAAAAAG	A	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=-0.335;QD=1.82;ReadPosRankSum=2.482;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr20	43535162	rs372424925	AAAAAAAG	A	200.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=14.236;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-0.978;SOR=4.170;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr20	43538733	rs2072727	T	C	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:75,88:0.54:163
chr20	43547537	rs2072728	A	G	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:63,80:0.56:143
chr20	43550045	rs2425686	A	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr20	43600673	rs6130717	C	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	43623658	rs6017460	C	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.05;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	43629135	rs17420378	G	A	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr20	43681951	rs2284275	C	T	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	43723627	rs734784	T	C	8334.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:332,396:0.54:728
chr20	43727155	rs13043825	C	T	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:56,68:0.55:124
chr20	43727367	rs34643859	T	C	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.008;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:61,63:0.51:124
chr20	43727443	rs35456522	G	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr20	43728070	rs6073643	T	C	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr20	43743532	rs11700134	G	A	2720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=3.493;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:299,154:0.34:453
chr20	43743532	.	GCG	ACA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=4;MGOF=7;MMLQ=23;MQ=59.89;NF=123;NR=73;PP=2944;QD=20;SC=ACACACACACGCGCACACACA;SbPval=0.53;Source=Platypus;TC=515;TCF=322;TCR=193;TR=196;WE=43743543;WS=43743498;set=Platypus	GT:AD:AF:DP	1/0:319,196:0.38:515
chr20	43743534	rs11700135	G	A	6422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=3.772;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:258,199:0.44:457
chr20	43752737	rs34841068	G	C	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:95,94:0.50:189
chr20	43803725	rs1983649	T	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr20	43926536	rs2227274	G	T	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:130,147:0.53:277
chr20	43926573	rs2227275	C	T	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:170,200:0.54:370
chr20	43929659	rs2076023	G	A	5641.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:228,263:0.54:491
chr20	43931857	rs2235228	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr20	43933021	rs2072788	G	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr20	43933163	rs2233094	T	C	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:110,106:0.49:216
chr20	43934445	.	C	CTTTTTTT	184.94	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=36.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	43940112	rs2743327	C	G	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:80,108:0.57:188
chr20	43964407	rs2072791	G	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	43964707	rs3830725	C	CT	678.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr20	43976807	rs2078423	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr20	43976869	rs5841587	C	CT	4329.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:72,102:0.59:174
chr20	43976875	rs5841588	GC	G,GCC	6500.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.030;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=17.376;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.10;ReadPosRankSum=0.300;SOR=0.485;set=HC	GT:AD:AF:DP	1/2:5,130,74:0.62,0.35:209
chr20	43976991	rs2228384	A	G	10036.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:508,485:0.49:993
chr20	43995410	rs6032142	C	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,59:0.62:95
chr20	44002665	rs2231626	C	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:82,79:0.49:161
chr20	44004155	rs10546815	CATT	C	2834.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:90,75:0.45:165
chr20	44006078	rs2231614	C	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr20	44038574	rs1127497	A	G	5962.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:286,288:0.50:574
chr20	44048065	rs3092108	C	CG	10032.73	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:347,396:0.53:743
chr20	44049916	rs3092450	T	TC	1475.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr20	44052992	rs13217	G	A	11346.77	.	AC=1;AF=0.500;AN=2;DB;DP=1024;set=Intersection	GT:AD:AF:DP	0/1:490,531:0.52:1021
chr20	44053069	rs2741566	T	C	33490.77	.	AC=2;AF=1.00;AN=2;DB;DP=1198;set=Intersection	GT:AD:AF:DP	1/1:0,1198:1.00:1198
chr20	44054349	rs707577	T	C	24585.77	.	AC=2;AF=1.00;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	1/1:1,946:1.00:947
chr20	44141201	rs11470736	TCACACA	T,TCA	3507.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=96;set=Intersection	GT:AF:DP	1/1:0.99:84
chr20	44141331	rs6032259	A	G	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr20	44144118	rs8125061	C	T	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr20	44163988	rs6032274	T	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	44170712	rs11594	C	A	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr20	44171292	rs2231842	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr20	44174423	rs765156	G	A	11673.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr20	44180813	rs17348421	G	A	11074.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr20	44180868	rs17433181	A	G	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	44181723	rs2294559	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	44181980	rs3817886	C	A	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:6,274:0.98:280
chr20	44182081	rs6032299	A	G	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	44184285	rs6032305	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	44184375	rs2250860	T	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	44190705	rs3817887	T	G	8855.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr20	44190996	rs2272956	A	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	44208011	rs7273669	C	T	9980.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:1,322:1.00:323
chr20	44314609	rs232729	A	G	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr20	44331043	rs6032445	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr20	44333052	rs980984	A	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr20	44333326	rs11361717	CT	C	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.415;QD=3.05;ReadPosRankSum=-0.562;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr20	44334394	rs232291	A	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr20	44334588	rs232290	C	G	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:299,195:0.39:494
chr20	44350931	rs232262	C	G	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:171,152:0.47:323
chr20	44352620	rs6017667	G	A	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:338,228:0.40:566
chr20	44352740	rs1487317	G	A	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:172,148:0.46:320
chr20	44354087	rs6032473	G	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr20	44354372	rs6032474	G	A	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,60:0.46:130
chr20	44354387	rs232259	A	C	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr20	44378577	rs380421	T	C	4701.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:207,232:0.53:439
chr20	44417643	rs6032537	A	G	4762.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:167,222:0.57:389
chr20	44417675	rs6032538	G	C	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:124,180:0.59:304
chr20	44418471	rs411945	G	C	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr20	44418564	rs3746493	A	G	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:86,96:0.53:182
chr20	44419363	.	CA	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.724;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr20	44420637	rs2664539	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr20	44420682	rs2664591	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr20	44422373	rs6032544	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr20	44422705	rs6032545	G	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr20	44423843	rs6104350	C	A	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr20	44425026	rs11477536	CA	C	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=6.09;ReadPosRankSum=1.504;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:69,68:0.50:137
chr20	44429633	rs11458259	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.129;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.20;ReadPosRankSum=2.226;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:149,30:0.17:179
chr20	44451901	rs8860	T	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,71:0.48:149
chr20	44452697	rs4629	C	A	4493.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:228,213:0.48:441
chr20	44453335	rs144529565	A	AC	2510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-2.692;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:210,138:0.40:348
chr20	44456059	rs373018	T	C	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:64,72:0.53:136
chr20	44468931	rs197669	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr20	44468982	rs11418101	A	AC	2835.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:83,85:0.51:168
chr20	44469290	rs4638862	G	A	11212.77	.	AC=1;AF=0.500;AN=2;DB;DP=1031;set=Intersection	GT:AD:AF:DP	0/1:493,534:0.52:1027
chr20	44470676	rs3848713	T	C	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:109,114:0.51:223
chr20	44472163	rs55931834	C	T	5907.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:264,285:0.52:549
chr20	44485670	rs75498225	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr20	44501458	rs6130959	A	G	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,91:0.58:156
chr20	44505973	rs2903808	T	C	4482.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:168,189:0.53:357
chr20	44506418	rs1045493	G	A	3354.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:157,146:0.48:303
chr20	44511627	rs11086984	C	T	4850.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:205,213:0.51:418
chr20	44515059	rs6094224	T	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr20	44516444	rs7268221	A	G	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:57,76:0.57:133
chr20	44517360	rs1516580	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr20	44518843	rs3817731	A	T	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:177,153:0.46:330
chr20	44519643	rs2868362	G	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:60,72:0.55:132
chr20	44520237	rs3080212	CCTG	C	8608.73	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:200,225:0.53:425
chr20	44522005	rs742034	A	G	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:164,163:0.50:327
chr20	44522125	rs10633828	C	CT	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=1.487;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr20	44522594	rs4810476	A	G	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:132,150:0.53:282
chr20	44523248	rs2075962	T	C	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:168,158:0.48:326
chr20	44523442	rs3215446	TC	T	9819.73	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:406,380:0.48:786
chr20	44523547	rs2075961	G	A	6467.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:244,279:0.53:523
chr20	44523782	rs4608591	C	T	5809.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:254,270:0.52:524
chr20	44525464	rs11468785	GC	G	743.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr20	44526783	rs7270170	G	A	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:105,119:0.53:224
chr20	44530838	rs553359	G	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr20	44533369	rs11086986	C	A	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:101,98:0.49:199
chr20	44538427	rs378114	T	C	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr20	44538484	rs435306	G	T	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	44539950	rs56136310	C	T	9221.77	.	AC=1;AF=0.500;AN=2;DB;DP=955;set=Intersection	GT:AD:AF:DP	0/1:513,436:0.46:949
chr20	44540178	rs394643	A	G	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:170,152:0.47:322
chr20	44574533	rs11696196	C	T	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:144,144:0.50:288
chr20	44576502	rs7679	T	C	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:134,113:0.46:247
chr20	44578776	rs6065910	A	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	44586036	rs3746506	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr20	44588109	rs3746507	G	A	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	44594228	rs3746513	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr20	44596207	rs6032606	C	G	12271.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr20	44596545	rs3848719	G	A	3661.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:222,199:0.47:421
chr20	44599839	rs6017715	G	C	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	44638781	rs3918251	A	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr20	44639511	rs3918253	C	T	8204.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:276,363:0.57:639
chr20	44639692	rs2274755	G	T	9232.77	.	AC=1;AF=0.500;AN=2;DB;DP=982;set=Intersection	GT:AD:AF:DP	0/1:537,443:0.45:980
chr20	44640225	rs17576	A	G	7175.77	.	AC=1;AF=0.500;AN=2;DB;DP=1089;set=Intersection	GT:AD:AF:DP	0/1:691,391:0.36:1082
chr20	44640959	rs3918256	G	A	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:253,237:0.48:490
chr20	44642406	rs2250889	G	C	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	44642833	rs13969	A	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr20	44643111	rs17577	G	A	4400.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:229,215:0.48:444
chr20	44644965	rs13925	G	A	4266.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:239,204:0.46:443
chr20	44645010	rs20544	C	T	3427.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:116,163:0.58:279
chr20	44650318	rs10432735	A	T	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=1.805;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:55,29:0.35:84
chr20	44663475	rs11699481	T	C	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr20	44674743	rs2297199	A	C	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:202,177:0.47:379
chr20	44675136	rs3848727	T	C	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	44678348	rs6032635	G	A	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr20	44678510	rs73112831	C	A	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:60,67:0.53:127
chr20	44691350	rs1537028	T	G	4615.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:203,214:0.51:417
chr20	44693947	rs2903908	T	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr20	44746982	rs1883832	T	C	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	44747086	rs745307	G	A	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.492;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:126,107:0.46:233
chr20	44757213	rs3765457	A	G	9474.77	.	AC=1;AF=0.500;AN=2;DB;DP=1026;set=Intersection	GT:AD:AF:DP	0/1:544,470:0.46:1014
chr20	44757407	rs3765459	G	A	5795.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:252,288:0.53:540
chr20	44806875	rs2281335	G	A	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:150,132:0.47:282
chr20	44839322	rs2425785	G	C	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	44856463	rs733379	G	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr20	44979641	rs4810503	TA	GC	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	44983517	rs12480667	G	A	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:146,104:0.42:250
chr20	44985307	rs911435	T	G	5744.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	44987318	rs1044369	C	G	5615.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:287,257:0.47:544
chr20	44996182	rs2257495	A	G	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr20	44998791	rs2261964	C	T	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	45003326	rs2261213	A	G	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	45003788	rs2257545	T	C	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	45140689	rs6062998	T	C	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:106,142:0.57:248
chr20	45169805	rs2411	A	G	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr20	45170213	rs847078	A	G	4098.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:185,188:0.50:373
chr20	45173910	rs202395	T	C	4529.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:185,208:0.53:393
chr20	45174026	rs202396	A	C	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:157,188:0.54:345
chr20	45188971	rs910062	C	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	45192249	.	A	AAG,AAGAGAGAG	1899	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=15;MMLQ=23;MQ=59.98;NF=9,9;NR=48,48;PP=1899,504;QD=33.9298245614;SC=CGACCACAGCAAGAGGGAGAG;SbPval=0.56;Source=Platypus;TC=93;TCF=15;TCR=78;TR=57,57;WE=45192262;WS=45192239;set=Platypus	GT:AF:DP	0/1:0.61:93
chr20	45192253	rs59207395	G	GA	3529.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.494;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.91;ReadPosRankSum=-0.469;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:15,103:0.87:118
chr20	45192254	.	G	A	2506	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=2;HapScore=1;MGOF=15;MMLQ=21;MQ=59.88;NF=48;NR=66;PP=2506;QD=20;SC=ACAGCAAGAGGGAGAGAGAGA;SbPval=0.49;Source=Platypus;TC=122;TCF=50;TCR=72;TR=114;WE=45192262;WS=45192239;set=Platypus	GT:AD:AF:DP	1/1:8,114:0.93:122
chr20	45192254	rs35374760	G	GA,GAGAGAGA	3476.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=-2.976;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.80;ReadPosRankSum=-0.824;SOR=0.491;set=HC	GT:AD:AF:DP	1/2:8,64,34:0.60,0.32:106
chr20	45204266	rs1880898	G	A	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr20	45212455	rs389905	T	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr20	45214403	rs73113722	A	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:63,71:0.53:134
chr20	45315769	rs11550540	T	C	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:96,101:0.51:197
chr20	45355800	rs199896452	G	GTTTTACATCA	2265.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.423;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=4.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=1.795;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:80,60:0.43:140
chr20	45355801	.	G	C	2275.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=-0.677;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:80,52:0.39:132
chr20	45355805	rs201022621	GC	G	1855.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:74,50:0.40:124
chr20	45358145	rs2425906	T	G	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=1.279;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:74,64:0.46:138
chr20	45358223	rs2425907	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr20	45629941	rs3746492	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:75,69:0.48:144
chr20	45630157	rs6094549	T	G	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:131,93:0.42:224
chr20	45725959	rs947018	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr20	45795744	rs3091782	T	C	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr20	45795855	rs3092020	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr20	45797749	.	TTC	T	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DP=321;ExcessHet=3.0103;FS=6.130;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.977;QD=0.51;ReadPosRankSum=-1.295;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:263,34:0.11:297
chr20	45797883	rs3091653	C	T	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:192,159:0.45:351
chr20	45797954	rs3091593	T	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:86,88:0.51:174
chr20	45798014	rs3091985	C	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr20	45801319	rs3827049	T	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr20	45809652	rs2235907	A	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr20	45811860	rs8124918	A	G	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr20	45816594	rs3818012	G	A	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr20	45816639	rs3818013	A	G	4541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=5.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.24;ReadPosRankSum=-0.535;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:130,119:0.48:249
chr20	45816649	rs3818014	C	T	4933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=3.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=-0.750;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:147,136:0.48:283
chr20	45853037	rs2664544	A	G	11691.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr20	45856045	rs1124178	A	G	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	45891189	rs2294560	T	C	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr20	45905651	rs3746485	T	C	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.153;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-1.092;QD=11.41;ReadPosRankSum=0.407;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr20	45905654	rs10717572	TA	T	761.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=12.322;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.000;QD=22.41;ReadPosRankSum=-1.904;SOR=1.520;set=HC	GT:AD:AF:DP	1/1:5,29:0.85:34
chr20	45923383	rs2076402	G	T	6842.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:341,313:0.48:654
chr20	45923539	rs6066270	C	T	3558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.567;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:150,163:0.52:313
chr20	46256424	rs6094752	C	T	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:191,176:0.48:367
chr20	46267950	rs4810648	C	T	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr20	46270911	rs11480806	G	GA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-1.823;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:147,30:0.17:177
chr20	46279613	rs2745724	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.471;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=1.698;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:66,41:0.38:107
chr20	46279836	rs147879509	ACAG	A	2863.73	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:323,168:0.34:491
chr20	46279863	.	GCAA	G	2423	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=28;MQ=60.13;NF=36;NR=129;PP=2423;QD=14.7272727273;SC=AGCAGCAGCAGCAACAGCAAC;SbPval=0.61;Source=Platypus;TC=495;TCF=114;TCR=381;TR=165;WE=46279873;WS=46279853;set=Platypus	GT:AD:AF:DP	0/1:330,165:0.33:495
chr20	46287012	rs444271	C	G	7883.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr20	46288255	rs73913405	C	T	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:153,116:0.43:269
chr20	46292149	rs2235734	T	G	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr20	46294725	rs2076545	C	T	10471.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr20	46294864	rs13044281	A	G	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=27.853;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-0.330;QD=4.08;ReadPosRankSum=-0.958;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:228,79:0.26:307
chr20	46305112	rs11906661	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	46313135	rs2297586	C	T	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	46365571	rs3810526	A	G	9780.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	47242644	rs6095215	A	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr20	47244450	rs6125402	G	A	1725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.781;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:77,83:0.52:160
chr20	47244536	rs11477906	TG	T	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.123;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr20	47244598	rs6095217	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr20	47246077	rs3936192	C	G	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:116,104:0.47:220
chr20	47246127	rs3936193	G	A	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:105,104:0.50:209
chr20	47246181	rs11699725	A	C	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.414;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:68,58:0.46:126
chr20	47247161	rs3827041	G	A	2546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.926;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:102,122:0.54:224
chr20	47247396	rs3810534	A	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr20	47248808	rs4616535	C	T	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:142,140:0.50:282
chr20	47249116	rs4487145	G	A	5800.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:312,278:0.47:590
chr20	47249170	rs4487146	G	A	7436.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:254,219:0.46:473
chr20	47249189	rs4413212	T	C	6458.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:230,170:0.42:400
chr20	47249200	rs4527260	A	G	5936.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:193,154:0.44:347
chr20	47253150	rs2664521	T	C	14437.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr20	47256479	rs4611698	T	C	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:123,81:0.40:204
chr20	47258613	rs4596036	G	A	5630.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:188,247:0.57:435
chr20	47260936	rs6019344	A	G	8366.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:353,408:0.54:761
chr20	47261017	rs6066802	T	C	8703.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:357,407:0.53:764
chr20	47262322	rs6066804	G	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,47:0.52:90
chr20	47272963	rs3091871	G	GC	30360.73	.	AC=2;AF=1.00;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:0,813:1.00:813
chr20	47273119	rs6066809	T	C	4350.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:156,190:0.55:346
chr20	47276639	rs11086257	A	AT	5684.73	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:129,168:0.57:297
chr20	47292577	.	GA	G	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.518;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr20	47292823	rs6125428	C	G	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:86,91:0.51:177
chr20	47296365	rs3817991	G	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr20	47351095	rs6122720	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:99,125:0.56:224
chr20	47361519	rs3746816	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr20	47569112	rs2295030	C	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr20	47585642	rs3764683	T	C	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:83,77:0.48:160
chr20	47589122	rs2273102	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr20	47604825	rs4810905	G	A	2792.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:134,130:0.49:264
chr20	47614665	rs3764681	G	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chr20	47615074	rs60107724	TA	T	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=6.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.888;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:39,40:0.51:79
chr20	47621554	rs4810910	G	A	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:101,90:0.47:191
chr20	47628363	rs1535268	G	A	5078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=0.912;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:201,240:0.54:441
chr20	47628368	rs371203595	ATG	A	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.115;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:398,55:0.12:453
chr20	47630449	rs2281582	C	T	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:121,139:0.53:260
chr20	47632754	rs1473718	A	G	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:158,112:0.41:270
chr20	47634006	rs11086275	A	AT	3570.73	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:224,201:0.47:425
chr20	47639464	rs2426106	G	C	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr20	47648454	rs3091900	CA	C	1621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.592;QD=7.65;ReadPosRankSum=0.167;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:99,113:0.53:212
chr20	47649510	.	C	CA	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=2.479;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.550;QD=1.66;ReadPosRankSum=0.461;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:256,76:0.23:332
chr20	47675176	rs2064853	T	A	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.170;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:49,39:0.44:88
chr20	47682893	rs2246266	C	T	5973.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:285,275:0.49:560
chr20	47683568	rs60161542	CAAAAAAAAAAA	C	737.75	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.535;QD=29.51;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:2,23:0.92:25
chr20	47691445	rs3092153	C	T	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr20	47705763	.	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.388;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr20	47713063	rs17632	C	T	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr20	47739814	rs2295714	C	T	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:153,134:0.47:287
chr20	47770443	.	C	CA	728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=11.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.775;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:93,71:0.43:164
chr20	47775441	.	A	AAAATAAAT	3305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=1.833;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:158,81:0.34:239
chr20	47775474	rs11480966	A	AC	4586.73	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:276,194:0.41:470
chr20	47839653	rs2273146	C	T	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:74,90:0.55:164
chr20	47842853	rs238162	C	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr20	47843146	rs6067024	A	T	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr20	47845220	rs238165	T	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:87,78:0.47:165
chr20	47846586	rs171130	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr20	47850182	rs238148	C	T	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:177,150:0.46:327
chr20	47852822	rs238152	G	A	6993.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:359,342:0.49:701
chr20	47856037	rs238156	T	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr20	47859015	rs238204	A	G	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr20	47859217	rs1130146	G	A	5292.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:207,248:0.55:455
chr20	47859254	rs71186444	CTTTTTTTTTTTTTT	C	3977.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:51,101:0.66:152
chr20	47863409	rs144647523	ATT	A	1403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.872;QD=11.70;ReadPosRankSum=0.732;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:59,61:0.51:120
chr20	47865372	rs238208	G	A	7974.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:373,373:0.50:746
chr20	47865509	rs238209	G	A	7939.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:399,375:0.48:774
chr20	47866411	rs6063378	G	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr20	47872327	rs238220	A	G	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:103,79:0.43:182
chr20	47872377	rs238221	C	G	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:106,97:0.48:203
chr20	47874239	rs11295162	CT	C	1644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.683;QD=5.56;ReadPosRankSum=-1.638;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:147,149:0.50:296
chr20	47881581	rs6063380	A	C	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr20	47882893	rs238178	T	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.714;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.948;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:32,30:0.48:62
chr20	47886684	rs57950	G	A	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:136,124:0.48:260
chr20	47892270	rs238191	T	C	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:59,83:0.58:142
chr20	47948677	rs1972189	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr20	47951040	rs200288022	CTTTT	C	1132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.10;ReadPosRankSum=1.246;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:12,35:0.74:47
chr20	47956674	rs145244287	TATAATA	T	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.04;ReadPosRankSum=-1.115;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr20	47956706	.	TA	T	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.361;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr20	47956709	rs372451309	TAATAA	T	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.145;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr20	47956714	.	A	T	194	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=23;MQ=59.26;NF=12;NR=4;PP=194;QD=14.2982007842;SC=AATAATAATAATATTAGTGGA;SbPval=0.81;Source=Platypus;TC=33;TCF=22;TCR=11;TR=16;WE=47956722;WS=47956704;set=Platypus	GT:AD:AF:DP	0/1:17,16:0.48:33
chr20	48099637	.	C	CT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.020;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr20	48140682	rs5628	C	T	5557.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:371,300:0.45:671
chr20	48184463	rs575322	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.38;ReadPosRankSum=1.981;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr20	48184682	.	G	GCGGGGCTGGCGGGGCTGA	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=1.378;QD=27.08;ReadPosRankSum=0.627;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr20	48184734	rs7262428	G	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.34;QD=27.52;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	48252914	rs235035	C	T	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:258,228:0.47:486
chr20	48257149	rs421801	C	T	6307.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:378,308:0.45:686
chr20	48259034	rs2235855	A	G	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:156,105:0.40:261
chr20	48273299	rs4810968	T	C	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	48300990	rs6019972	C	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr20	48301146	rs6512586	G	A	4807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.227;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:276,233:0.46:509
chr20	48330030	rs12329570	G	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:100,78:0.44:178
chr20	48429485	rs61734269	A	C	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-0.506;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:60,81:0.57:141
chr20	48429508	rs58677849	GG	CC	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	48456238	rs2025958	G	A	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	48467560	rs532237	G	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	48479356	rs3092598	TATGA	T	3441.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	48491258	rs542234	T	G	32292.77	.	AC=2;AF=1.00;AN=2;DB;DP=1199;set=Intersection	GT:AD:AF:DP	1/1:0,1193:1.00:1193
chr20	48494650	rs6020100	A	G	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	48500736	.	GACACACACACACACAC	G,GACACAC	1351.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.46;QD=32.97;SOR=2.432;set=HC	GT:AD:AF:DP	1/2:0,30,11:0.73,0.27:41
chr20	48500777	rs61401115	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.79;QD=40.70;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	48500783	.	CACACACACACACG	C	1062.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.65;ReadPosRankSum=0.395;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr20	48561893	rs4810993	A	G	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	48562083	rs11473738	G	GTTGGACACC	7789.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	48599473	rs113842434	AC	A	749.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	48700947	rs67366514	T	C	7790.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:298,361:0.55:659
chr20	48701351	.	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=9.886;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.944;QD=1.15;ReadPosRankSum=-0.125;SOR=2.442;set=HC	GT:AD:AF:DP	0/1:66,25:0.27:91
chr20	48713049	rs6012831	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr20	48729677	rs126907	C	G	8741.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr20	48729711	rs761214	C	T	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:129,149:0.54:278
chr20	48747697	rs55894522	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr20	48760238	rs10574784	CTT	C	777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.017;QD=7.78;ReadPosRankSum=0.032;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:64,36:0.36:100
chr20	48770159	rs232733	T	C	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	48808011	rs4253439	C	T	23206.77	.	AC=2;AF=1.00;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	1/1:0,868:1.00:868
chr20	48894872	rs3761180	T	C	7132.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:411,361:0.47:772
chr20	48894919	rs12625213	C	T	4164.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:234,191:0.45:425
chr20	49196284	rs2230604	C	T	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=12.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=-0.044;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:27,55:0.67:82
chr20	49211311	rs6091179	C	T	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr20	49225953	rs73615305	A	G	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:173,189:0.52:362
chr20	49227294	rs4811083	T	C	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,72:0.46:157
chr20	49227544	rs144167038	G	GGGCTTAGTGCCGGGCC	5451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=21.884;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.105;QD=19.90;ReadPosRankSum=-1.372;SOR=1.645;set=HC	GT:AD:AF:DP	0/1:143,131:0.48:274
chr20	49236478	rs6122953	G	A	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:155,159:0.51:314
chr20	49354351	.	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=1.358;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr20	49366491	rs61730981	C	T	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:224,180:0.45:404
chr20	49411698	rs2272962	G	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr20	49434669	rs5841815	TA	T	1329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.970;QD=5.68;ReadPosRankSum=-0.268;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:120,114:0.49:234
chr20	49434829	rs11283878	T	TGCCTGGAAGGCGTGGGTTTAG	2804.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=8.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-0.095;SOR=1.481;set=HC	GT:AD:AF:DP	0/1:97,69:0.42:166
chr20	49448800	.	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.873;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr20	49458484	rs2145694	G	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr20	49492928	rs6020818	G	C	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:63,53:0.46:116
chr20	49493003	rs6020819	TT	AC	7189.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;JOINED;set=Intersection	GT:AD:AF:DP	0/1:213,189:0.47:402
chr20	49493171	rs6091229	G	A	4479.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:243,218:0.47:461
chr20	49493195	rs6091230	A	G	3615.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:204,168:0.45:372
chr20	49507892	rs761240	T	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	49551780	rs11483542	T	TA	526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.731;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:76,42:0.36:118
chr20	49552904	rs2294902	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr20	49557764	.	AAT	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.46;ReadPosRankSum=-0.431;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr20	49575334	rs2281282	A	C	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,61:0.46:132
chr20	49576664	rs7269297	T	G	4745.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:222,218:0.50:440
chr20	49620783	rs1054268	G	T	6054.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:335,290:0.46:625
chr20	49621149	rs6122993	T	C	5534.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:265,263:0.50:528
chr20	49621399	rs4811110	G	C	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:95,101:0.52:196
chr20	49626971	rs6122994	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr20	50015107	rs11468602	TA	T	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-0.211;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr20	50071258	rs228840	A	G	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	50092027	rs6013193	T	G	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,80:0.54:149
chr20	50092287	rs6021231	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr20	50178965	rs2869427	G	C	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.167;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr20	50223975	rs2273090	G	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr20	50224161	rs2273089	C	T	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr20	50224206	rs3818004	G	A	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	50225206	rs3827032	G	A	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:146,140:0.49:286
chr20	50225235	rs6021312	G	A	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	50230462	rs2235863	A	G	5864.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr20	50233926	rs139658069	ATTCT	A	4448.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:109,118:0.52:227
chr20	50234151	rs13044000	G	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:114,87:0.43:201
chr20	50235760	rs13040403	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr20	50238545	rs2235862	A	G	7686.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr20	50241714	rs2235859	C	A	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	50243941	rs1467413	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr20	50244098	rs2426317	T	C	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,231:0.99:233
chr20	50245732	rs2426318	G	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:68,54:0.44:122
chr20	50255762	rs2426333	T	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr20	50255849	rs6063682	A	C	1780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=0.552;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:63,83:0.57:146
chr20	50256107	rs2426334	T	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	50273749	rs6021355	G	A	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:141,123:0.47:264
chr20	50286484	rs5841856	T	TA	1702.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:102,114:0.53:216
chr20	50287553	rs6013248	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:61,69:0.53:130
chr20	50287790	rs2255342	A	G	10195.77	.	AC=1;AF=0.500;AN=2;DB;DP=1003;set=Intersection	GT:AD:AF:DP	0/1:491,501:0.51:992
chr20	50287925	rs2255358	A	G	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:115,110:0.49:225
chr20	50290654	rs6091346	T	C	2949.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:105,135:0.56:240
chr20	50292763	rs11339305	GA	G	1805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-0.300;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:115,131:0.53:246
chr20	50305755	rs6067898	G	A	9290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.966;QD=18.92;ReadPosRankSum=0.471;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:238,253:0.52:491
chr20	50305761	rs6067899	G	A	9104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=19.45;ReadPosRankSum=1.763;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:233,235:0.50:468
chr20	50307372	rs45585740	G	C	5938.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:389,305:0.44:694
chr20	50310466	rs6021389	T	C	4285.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:224,209:0.48:433
chr20	50310483	rs143733288	A	ATC	20123.73	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr20	50310709	rs6013259	G	A	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:68,86:0.56:154
chr20	50314078	rs13044892	G	A	5096.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:314,254:0.45:568
chr20	50314200	rs1205690	A	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr20	50329416	rs1205698	T	C	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	50329704	rs1205699	G	A	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:67,98:0.59:165
chr20	50342285	rs1205708	A	G	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:129,109:0.46:238
chr20	50342555	rs1205709	C	T	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	50346216	rs34915887	G	A	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr20	50405502	rs17802735	C	G	10193.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr20	50407966	rs13038893	C	T	6373.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr20	50408482	rs6013281	A	G	12907.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,500:1.00:500
chr20	50668746	rs201746789	CTTTATATTTATATA	C	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	50721106	rs62216874	G	C	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:106,73:0.41:179
chr20	50734114	rs148552378	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr20	50734238	rs67904269	T	C	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:181,194:0.52:375
chr20	50734367	rs2180366	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr20	50734397	.	C	T	434.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr20	50775605	rs6021760	G	C	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:142,129:0.48:271
chr20	50777026	rs3818198	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr20	50781298	rs72411807	T	TAA	1549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.622;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.254;QD=8.66;ReadPosRankSum=1.236;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:98,81:0.45:179
chr20	50781709	rs6126487	T	C	3912.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:97,176:0.64:273
chr20	50781725	rs6021770	G	A	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:171,91:0.35:262
chr20	50782102	rs2038429	T	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr20	50782303	rs6021771	A	G	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	50782343	rs6021772	C	A	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:121,78:0.39:199
chr20	50782608	rs2273472	G	T	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr20	50803444	rs36027430	C	T	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:127,96:0.43:223
chr20	50803459	rs34252344	C	T	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:108,135:0.56:243
chr20	50803573	rs34351592	G	A	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:131,135:0.51:266
chr20	50803760	rs7269302	T	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr20	51802132	rs2010156	T	C	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:139,122:0.47:261
chr20	51870849	rs739870	T	C	6250.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:261,288:0.52:549
chr20	52185814	rs4602270	C	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,38:0.40:96
chr20	52557934	rs74179252	G	GGT,GGTGT	3153.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=93;set=Intersection	GT:AF:DP	1/2:0.14,0.85:86
chr20	52561372	rs2072241	A	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	52592140	rs11474654	G	GTA	1674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.055;QD=22.04;ReadPosRankSum=1.536;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:17,59:0.78:76
chr20	52611427	.	TAC	T	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=4.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.551;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:142,34:0.19:176
chr20	52645534	rs466264	T	C	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.334;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr20	52674615	rs465184	A	G	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	52675132	.	C	CTTT	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.919;QD=15.69;ReadPosRankSum=-0.657;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr20	52675188	rs394732	G	T	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	52675259	rs2020975	G	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	52684837	rs3787551	G	T	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr20	52685084	rs290446	T	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	52786073	rs4809960	T	C	3171.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:208,155:0.43:363
chr20	52786219	rs2296241	G	A	7577.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:349,361:0.51:710
chr20	52788314	rs2259735	T	C	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:71,100:0.58:171
chr20	52789743	rs2248137	C	G	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:107,98:0.48:205
chr20	52831705	rs1964861	G	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr20	52840743	rs11472518	C	CTT,CTTTTT	1767.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=9.426;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;MQRankSum=0.000;QD=15.93;ReadPosRankSum=-1.147;SOR=1.804;set=HC	GT:AD:AF:DP	1/2:26,56,29:0.50,0.26:111
chr20	52841011	rs13039589	A	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr20	54578843	rs422330	C	G	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:91,95:0.51:186
chr20	54823779	rs13044293	G	T	7261.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr20	54961463	rs1047972	T	C	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:162,146:0.47:308
chr20	54963149	rs67542863	C	CGACAAGACCAACCTCCATGTGGGTTTATAAATGTGAATGAGATTACAGATTATTCAATTTA	1742.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=6.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.63;ReadPosRankSum=-0.040;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr20	54974424	rs2426617	C	A	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr20	55028167	rs2870738	G	A	5897.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:233,258:0.53:491
chr20	55033476	rs3746623	C	G	7189.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:348,327:0.48:675
chr20	55033635	rs3746624	C	T	4974.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:220,231:0.51:451
chr20	55033647	rs3746625	T	C	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:205,213:0.51:418
chr20	55033713	rs3746626	G	A	3415.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:188,158:0.46:346
chr20	55033856	rs4811697	A	C	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:59,72:0.55:131
chr20	55045632	rs6024898	G	A	4097.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:184,193:0.51:377
chr20	55045843	rs6014740	T	C	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:71,100:0.58:171
chr20	55047628	rs185264325	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr20	55047632	rs11482055	T	TA	59.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr20	55048283	rs6024901	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr20	55048496	rs11471796	T	TGAG	2421.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,64:0.46:138
chr20	55049908	rs1474890	A	G	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:71,90:0.56:161
chr20	55071620	rs6014752	T	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr20	55072472	rs6024911	A	G	6329.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:198,277:0.58:475
chr20	55088404	rs1059768	A	G	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr20	55204478	rs62208554	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr20	55209073	rs62208556	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr20	55211581	rs5842120	C	CA	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.894;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr20	55212711	rs6025024	T	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr20	55748206	rs2148328	G	A	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:192,162:0.46:354
chr20	55800937	rs6070031	C	T	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:195,218:0.53:413
chr20	55913502	rs113456122	C	CT	349.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.448;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.724;QD=7.77;ReadPosRankSum=-0.120;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr20	55918014	rs2236330	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr20	55929881	rs4811837	T	C	5358.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:336,260:0.44:596
chr20	55966904	rs117963839	C	T	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.849;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:79,59:0.43:138
chr20	55975099	rs6014986	T	A	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr20	55982579	rs3764719	T	C	11716.77	.	AC=1;AF=0.500;AN=2;DB;DP=1307;set=Intersection	GT:AD:AF:DP	0/1:731,566:0.44:1297
chr20	56064099	rs116593113	TT	CC	4199.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;JOINED;set=Intersection	GT:AD:AF:DP	0/1:134,111:0.45:245
chr20	56064157	rs6128051	C	T	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:319,191:0.37:510
chr20	56064267	rs6099656	T	C	4658.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:228,235:0.51:463
chr20	56071399	rs62204254	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr20	56075580	rs6099660	C	T	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr20	56078690	rs6128059	G	A	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:73,73:0.50:146
chr20	56089869	rs11086612	GT	G	6820.73	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:410,470:0.53:880
chr20	56098070	rs11477755	GA	G	3450.73	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:149,163:0.52:312
chr20	56098733	rs6025606	T	C	6620.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:269,303:0.53:572
chr20	56099114	rs6070128	C	G	10407.77	.	AC=1;AF=0.500;AN=2;DB;DP=999;set=Intersection	GT:AD:AF:DP	0/1:523,475:0.48:998
chr20	56099305	rs11699220	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:39,88:0.69:127
chr20	56131387	rs117072392	ACG	CTT	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;JOINED;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr20	56136536	rs1042521	A	G	5981.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:192,263:0.58:455
chr20	56137184	rs6070157	C	T	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:133,120:0.47:253
chr20	56137798	rs1062600	G	A	6339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.72;ReadPosRankSum=0.215;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:117,162:0.58:279
chr20	56137807	rs1042523	A	G	6357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.92;ReadPosRankSum=-0.397;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:126,164:0.57:290
chr20	56137834	rs1062601	A	G	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:136,156:0.53:292
chr20	56137895	rs707555	G	C	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr20	56138040	rs2070755	G	C	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:173,181:0.51:354
chr20	56138621	rs8192708	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr20	56138648	rs11552145	G	A	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr20	56139403	rs2070756	T	C	5660.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:299,275:0.48:574
chr20	56139967	rs1023049	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr20	56186884	rs2865394	T	C	11156.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr20	56189985	rs16981187	C	G	3954.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:252,189:0.43:441
chr20	56190634	rs2073145	C	T	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	56191172	rs11468882	CAG	C	23079.73	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr20	56227532	rs6025699	T	C	9521.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:2,357:0.99:359
chr20	56228019	rs8183538	G	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,81:0.55:148
chr20	56726107	rs6070358	C	T	12716.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr20	56728780	rs45572335	C	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr20	56793546	rs583987	A	G	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr20	56793706	rs584855	G	A	11330.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr20	56793764	rs1192511	G	A	7316.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr20	56796266	rs8122848	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr20	56796267	rs521615	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr20	56796386	rs41275660	A	C	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:108,96:0.47:204
chr20	56803676	.	C	CCCG	2155.73	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	56807969	rs3818744	A	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	56809652	rs619838	T	C	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:90,93:0.51:183
chr20	56810446	rs633276	A	G	4794.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:204,217:0.52:421
chr20	56810484	rs503900	C	T	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:127,136:0.52:263
chr20	56811400	rs474212	C	A	1374.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.880;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=0.999;SOR=2.315;set=HC	GT:AD:AF:DP	0/1:11,68:0.86:79
chr20	56815878	rs514706	A	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr20	56820702	rs595292	G	T	7203.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	56820734	rs77752322	G	A	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:197,190:0.49:387
chr20	56820880	rs3746406	C	T	15991.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr20	56821127	rs3746405	A	G	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:141,126:0.47:267
chr20	56822236	rs1541117	C	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr20	56822536	rs4811972	G	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	56823390	rs11471230	GTTTT	G	230.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.905;ClippingRankSum=-0.000;DB;DP=70;ExcessHet=3.0103;FS=15.911;MLEAC=1;MLEAF=0.500;MQ=66.32;MQRankSum=-0.000;QD=15.38;ReadPosRankSum=-0.909;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr20	56823395	rs518929	T	A	169.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.734;ClippingRankSum=-0.000;DB;DP=67;ExcessHet=3.0103;FS=15.911;MLEAC=1;MLEAF=0.500;MQ=66.59;MQRankSum=-0.000;QD=11.32;ReadPosRankSum=0.973;SOR=4.402;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr20	56825826	rs2282205	A	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr20	56826934	rs6064631	T	A	1620.73	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:153,96:0.39:249
chr20	56838389	rs6128295	A	G	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	56846580	rs6015238	T	A	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.42;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr20	56861443	rs41303905	T	C	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,81:0.51:158
chr20	56861637	rs6026181	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	56884186	rs483569	T	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr20	56928215	rs146846981	C	CT	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr20	56928308	rs138275429	A	AT	1452.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:65,70:0.52:135
chr20	56934551	.	CTT	C,CT	1691.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=11.673;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=-0.311;SOR=1.427;set=HC	GT:AD:AF:DP	1/2:59,75,81:0.35,0.38:215
chr20	57009796	rs2234487	C	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	57011383	rs201039529	CTTTTTTTTTTTTTT	C	296.87	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.000;QD=32.99;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr20	57227427	.	AC	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.159;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr20	57234503	.	TA	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=5.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.940;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:159,36:0.18:195
chr20	57244493	rs2296524	G	A	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	57246480	rs11474130	T	TTTA	273.82	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=34.23;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	57246492	.	G	GT	277.79	.	AC=2;AF=1.00;ALERT;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;QD=34.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	57246493	.	G	GT	277.79	.	AC=2;AF=1.00;ALERT;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;QD=34.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	57266592	rs6128401	C	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr20	57266700	rs6123822	T	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr20	57266749	rs11471424	CTTTT	C	1680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=18.587;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=1.734;QD=18.07;ReadPosRankSum=0.171;SOR=0.050;set=HC	GT:AD:AF:DP	0/1:35,58:0.62:93
chr20	57266781	rs6128402	C	T	2689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=4.770;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.207;QD=12.06;ReadPosRankSum=0.538;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:94,129:0.58:223
chr20	57266913	rs6123823	T	C	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:148,134:0.48:282
chr20	57267942	rs6092682	T	C	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.159;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:48,38:0.44:86
chr20	57268867	rs3746396	C	A	14865.77	.	AC=1;AF=0.500;AN=2;DB;DP=1411;set=Intersection	GT:AD:AF:DP	0/1:692,715:0.51:1407
chr20	57268994	rs6100166	G	C	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:68,122:0.64:190
chr20	57273545	rs6092683	G	A	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr20	57273885	rs2296526	T	C	5333.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:233,240:0.51:473
chr20	57274077	rs6092684	T	A	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr20	57274151	rs2296528	G	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,83:0.61:136
chr20	57275949	rs6070554	A	C	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	57280575	rs6100174	T	C	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:127,198:0.61:325
chr20	57288744	rs1570894	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr20	57290347	rs6026468	C	G	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr20	57292888	rs2426776	G	A	5683.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:320,279:0.47:599
chr20	57293089	rs6026470	A	G	6256.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:281,280:0.50:561
chr20	57293118	rs2426777	T	C	12367.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:333,321:0.49:654
chr20	57293124	rs10470038	A	AG	12510.73	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:347,327:0.49:674
chr20	57293350	rs12480759	G	T	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,81:0.52:155
chr20	57299027	.	GGAGGAGGAGGAA	G	161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=-0.542;QD=0.95;ReadPosRankSum=2.429;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:155,16:0.09:171
chr20	57299030	rs201658287	GGAGGAGGAA	G	2703.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=1.860;QD=16.09;ReadPosRankSum=1.617;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:91,77:0.46:168
chr20	57360653	rs61349087	C	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr20	57360720	rs144252791	AGAAAGAAAGAAG	A	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=-0.667;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr20	57360930	rs6092694	T	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr20	57415110	rs1800900	A	G	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:94,89:0.49:183
chr20	57415995	rs1800905	A	G	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:166,154:0.48:320
chr20	57474720	rs35714680	GCA	G	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	57475191	rs13831	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	57478807	rs7121	C	T	14717.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr20	57556295	rs151333	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr20	57556488	rs3746703	C	T	1199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.269;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:63,60:0.49:123
chr20	57564070	rs2273360	C	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:170,128:0.43:298
chr20	57564448	rs12479566	C	T	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr20	57565943	rs163782	G	C	5247.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:247,239:0.49:486
chr20	57566637	rs149265	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr20	57569617	rs374709307	CA	C	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.081;QD=4.40;ReadPosRankSum=0.943;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:38,41:0.52:79
chr20	57569816	rs7341	G	T	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:131,160:0.55:291
chr20	57569860	rs1043219	C	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:77,61:0.44:138
chr20	57570568	rs13720	G	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr20	57571763	rs9760	A	G	6294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.294;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:347,331:0.49:678
chr20	57572614	rs417847	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr20	57572675	rs163785	A	G	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	57582285	rs71181993	C	CCGGCCT	2064.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	57599016	rs163777	T	G	9547.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr20	57611828	.	GA	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.293;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr20	57612390	rs151359	C	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	57613704	rs199760980	CAA	C,CA	889.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.888;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=0.768;SOR=0.104;set=HC	GT:AD:AF:DP	1/2:6,23,32:0.38,0.52:61
chr20	57828914	rs56738506	T	TC,TCC	430.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/1:1.00:12
chr20	57828923	rs259957	A	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.08;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	57829301	rs259956	T	C	11826.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr20	57829821	rs3041675	C	CTT	5505.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	58179932	.	C	CT	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=1.097;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:20,26:0.57:46
chr20	58330128	rs1182477	G	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:62,71:0.53:133
chr20	58342130	rs2426831	T	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr20	58411441	rs2426849	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr20	58415393	rs11479086	AT	A	471.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr20	58416667	rs6064846	T	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr20	58420336	rs1416388	G	A	13644.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr20	58425413	rs2865768	C	T	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr20	58439322	rs6070976	C	G	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=0.421;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:29,49:0.63:78
chr20	58439454	rs11086679	G	GAA	1578.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr20	58439512	rs11086680	GAA	G	960.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-1.372;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:28,37:0.57:65
chr20	58440333	rs6070977	T	C	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=6.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=1.380;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr20	58440738	rs75543385	T	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr20	58440802	rs139734255	AATTT	A	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr20	58440840	rs6070978	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr20	58441502	rs6070980	G	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr20	58442826	rs6070981	C	A	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:74,81:0.52:155
chr20	58442920	rs142112394	TCTG	T	2182.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,57:0.53:108
chr20	58443798	rs6070982	C	T	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr20	58449145	rs78214780	T	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr20	58450266	rs6070989	A	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr20	58452582	rs61733222	A	G	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-1.321;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:80,50:0.38:130
chr20	58452891	rs11472207	T	TCAAA	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr20	58453226	rs11473766	T	TTA	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;MQ=60.67;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr20	58455613	.	C	CA	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=1.638;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr20	58456249	rs117766988	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr20	58456564	rs148253329	C	CATT	508.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr20	58456599	rs141269569	G	GA	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr20	58456951	rs6070994	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=7.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=0.474;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr20	58462016	rs149677862	A	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr20	58467157	rs6071006	G	A	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:136,115:0.46:251
chr20	58467801	rs6071007	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr20	58468098	rs11481480	A	AC	369.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr20	58468777	rs6071008	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr20	58476774	rs6027186	G	A	1983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=0.563;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:124,101:0.45:225
chr20	58482569	rs35098779	G	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr20	58486796	rs6071026	T	G	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr20	58486951	rs6027195	C	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr20	58490458	rs41276966	C	A	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:53,60:0.53:113
chr20	58497481	.	TA	T	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.226;QD=3.39;ReadPosRankSum=-0.273;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr20	58533744	rs6071043	T	G	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:142,109:0.43:251
chr20	58533759	rs6071044	G	T	4355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=0.655;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:156,124:0.44:280
chr20	58545317	rs78153451	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr20	58559654	rs1474909	C	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,58:0.47:124
chr20	58644995	rs6071100	T	C	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:112,103:0.48:215
chr20	58645262	rs35835192	A	T	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:67,70:0.51:137
chr20	59091746	rs140150191	CAGAT	C	1811.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr20	59091827	rs36085045	G	A	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr20	59091946	rs6064934	A	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr20	59431577	rs36227877	TACACAC	T	2413.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;QD=40.23;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr20	59793299	.	CAGGTGCAGGTGT	C	2978	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=1;MGOF=20;MMLQ=17;MQ=58.71;NF=53;NR=107;PP=2978;QD=20;SC=GGTGTAGGTGCAGGTGCAGGT;SbPval=0.29;Source=Platypus;TC=387;TCF=113;TCR=274;TR=160;WE=59793318;WS=59793289;set=Platypus	GT:AD:AF:DP	1/0:227,160:0.41:387
chr20	59827498	.	TCGG	T	1918.73	.	AC=2;AF=1.00;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	59908320	rs72064063	TACAC	T	4404.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:81,125:0.61:206
chr20	59908349	rs11086735	A	G	4638.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:80,123:0.61:203
chr20	59908377	rs11908491	T	C	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:62,76:0.55:138
chr20	60145672	rs2252560	T	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:104,53:0.34:157
chr20	60293919	rs2892179	C	A	23835.77	.	AC=2;AF=1.00;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	1/1:0,886:1.00:886
chr20	60294246	rs11440327	A	AT	2423.73	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:137,153:0.53:290
chr20	60318561	rs2297193	T	C	4473.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:217,209:0.49:426
chr20	60419575	rs58706469	A	G	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:83,89:0.52:172
chr20	60485327	rs1776237	C	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	60485627	rs2427240	C	T	8683.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr20	60498832	rs11484270	A	AC	1662.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,66:0.45:148
chr20	60503350	rs6142884	A	G	19357.77	.	AC=1;AF=0.500;AN=2;DB;DP=1689;set=Intersection	GT:AD:AF:DP	0/1:791,892:0.53:1683
chr20	60509209	rs3753045	C	T	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:161,115:0.42:276
chr20	60509387	rs3827115	TG	AA	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;JOINED;set=Intersection	GT:AD:AF:DP	0/1:94,59:0.39:153
chr20	60511734	rs4925209	A	G	2467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.429;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.50;ReadPosRankSum=1.372;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:43,62:0.59:105
chr20	60511737	rs4925323	T	C	2485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.649;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=1.473;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:45,64:0.59:109
chr20	60572663	rs2296081	C	A	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:140,140:0.50:280
chr20	60573983	rs2296082	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr20	60574216	rs2296083	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr20	60582540	rs2281735	T	A	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,70:0.45:154
chr20	60584328	rs2296087	T	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr20	60640305	rs200074661	TGCCAGG	T	357.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	60699938	rs11480126	C	CT	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.054;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.668;QD=13.95;ReadPosRankSum=1.612;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:4,23:0.85:27
chr20	60704117	rs4925345	A	G	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	60708216	rs6089657	G	A	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	60709530	rs11477488	CT	C	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=7.896;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.644;QD=10.61;ReadPosRankSum=-0.364;SOR=3.113;set=HC	GT:AD:AF:DP	0/1:12,53:0.82:65
chr20	60712174	rs3078903	CAGCAGT	C	1858.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	60712284	rs2057169	G	A	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	60712347	rs2057168	G	A	13249.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr20	60712511	rs2281740	A	G	25057.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,893:1.00:893
chr20	60713311	rs7076	G	A	10488.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr20	60713332	rs1135961	A	G	9275.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr20	60718420	rs3746651	C	T	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	60718487	.	CCGGCGACGGGCGGCGTCAGG	C	301.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr20	60754102	rs74447889	G	A	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:82,75:0.48:157
chr20	60773684	rs4925355	C	T	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:92,141:0.61:233
chr20	60808026	rs6089695	C	T	7047.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:339,331:0.49:670
chr20	60831300	rs6089706	G	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	60848248	rs6061476	G	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	60848348	rs2236526	C	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,65:0.43:152
chr20	60857034	rs2274938	G	A	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr20	60859381	rs4925225	A	G	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr20	60859430	rs11306058	AT	A	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.096;QD=5.78;ReadPosRankSum=1.479;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr20	60859486	rs4925226	A	G	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	60861505	.	G	GA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=4.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-2.186;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:125,27:0.18:152
chr20	60861782	rs2297592	A	G	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr20	60864390	rs3746657	C	T	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:81,85:0.51:166
chr20	60866882	.	A	AGCGGGGAGGCCCCACACACACCTGGGGACG	169.37	.	AC=1;AF=0.500;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;QD=84.68;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:0,2:1.00:2
chr20	60881330	rs2427273	G	A	14128.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr20	60881643	rs2427274	T	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	60881780	rs2427275	T	C	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	60882277	rs2427277	C	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	60882888	rs2427278	A	G	13422.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr20	60883273	rs2236523	A	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,59:0.56:105
chr20	60884651	rs6143020	T	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	60884695	.	T	TGGGGGGGTGGGAGGGGGTGGG	577.73	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	60885142	rs2379129	C	A	5019.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:208,232:0.53:440
chr20	60885428	rs41310032	C	A	4681.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:206,208:0.50:414
chr20	60885448	rs944897	A	G	16983.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr20	60886153	rs73144977	G	A	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:186,176:0.49:362
chr20	60886611	rs2297590	C	T	4429.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:227,212:0.48:439
chr20	60886890	rs202030713	C	A	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:98,93:0.49:191
chr20	60887581	rs944895	G	A	17525.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr20	60890375	rs6062210	C	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	60891288	rs2065578	A	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	60892116	rs2236521	G	A	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	60892526	rs2427281	A	G	13003.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr20	60892692	rs6062216	C	T	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr20	60893387	rs183361685	A	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.25;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	60893639	rs6089732	G	C	12851.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr20	60895738	rs6089346	A	G	5842.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	60897071	rs2274936	A	G	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	60897487	rs2274934	C	T	8657.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr20	60898505	rs2379128	C	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	60899196	rs116895933	C	T	2958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=0.928;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:117,138:0.54:255
chr20	60899206	rs2427283	C	T	9531.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.11;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	60900481	rs2427284	A	G	12043.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr20	60900579	rs2427285	C	A	18272.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr20	60902214	rs944894	G	A	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr20	60902490	rs944892	C	T	38671.77	.	AC=2;AF=1.00;AN=2;DB;DP=1471;set=Intersection	GT:AD:AF:DP	1/1:0,1464:1.00:1464
chr20	60902544	rs944891	A	C	42421.77	.	AC=2;AF=1.00;AN=2;DB;DP=1582;set=Intersection	GT:AD:AF:DP	1/1:1,1575:1.00:1576
chr20	60902883	rs4925375	C	T	10958.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr20	60904421	rs3065756	GCAGCC	G	4106.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	60904853	rs2427286	T	C	12182.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr20	60905717	rs2095235	T	C	13529.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr20	60905878	rs3810548	A	G	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	60906055	rs73613564	C	T	15494.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr20	60906269	rs35653162	C	T	409.22	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:31,20:0.39:51
chr20	60906277	.	T	TG	418	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=7;HapScore=3;MGOF=16;MMLQ=21;MQ=53.61;NF=0;NR=8;PP=418;QD=54.875;SC=GGCGGTACGATGGGGGGGTGC;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=8;WE=60906285;WS=60906259;set=Platypus	GT:AD:AF:DP	0/1:10,8:0.44:18
chr20	60907446	rs2151513	T	C	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	60907675	rs6142734	G	A	15750.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr20	60908882	rs12481057	G	A	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	60908892	rs141833594	A	AGTGGG	6531.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr20	60908964	rs13044266	G	A	22274.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=45.09;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr20	60908969	rs13042941	T	C	22477.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=44.16;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr20	60909060	rs13038331	A	G	19822.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:0,746:1.00:746
chr20	60909466	rs2379127	G	A	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	60909518	rs1105019	G	T	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	60909809	.	C	CAGGGCTCAGGGCGAGGGCG,CAGGGCTCAGGGCTCAGGGCGAGGGCG	3633.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=94;set=Intersection	GT:AF:DP	1/2:0.49,0.51:57
chr20	60909974	rs12625368	T	C	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	60911958	rs2890083	G	A	32970.77	.	AC=2;AF=1.00;AN=2;DB;DP=1281;set=Intersection	GT:AD:AF:DP	1/1:0,1273:1.00:1273
chr20	60912683	rs2427289	T	C	12189.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr20	60913495	rs2151512	T	C	10825.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr20	60917294	rs4925380	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	60920624	rs4925385	A	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	60920887	rs11204472	G	A	8122.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr20	60921044	rs4925386	T	C	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr20	60921643	rs4925229	T	C	11914.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr20	60921701	rs4925387	A	G	18658.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr20	60921896	rs4925388	A	G	15848.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr20	60927349	rs483876	C	T	18067.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:1,673:1.00:674
chr20	60927412	rs624313	G	A	17539.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,650:1.00:650
chr20	60927482	rs482220	G	A	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=1.531;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr20	60927538	rs623834	C	T	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	60927551	rs482010	A	G	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	60937597	rs477859	A	G	6842.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr20	60941869	rs144826578	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr20	60962624	rs755726	T	C	8111.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:333,377:0.53:710
chr20	60962943	rs1043008	T	C	4925.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:192,245:0.56:437
chr20	60963494	rs6089356	C	T	4392.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:231,202:0.47:433
chr20	60966318	rs6089219	G	T	7858.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr20	60966374	rs13042761	G	C	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:183,155:0.46:338
chr20	60967941	rs11698818	C	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:90,97:0.52:187
chr20	60969886	rs2427309	G	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr20	60969929	rs2427310	C	G	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr20	60971327	rs748037	A	C	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:80,75:0.48:155
chr20	60985910	rs77541050	G	A	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:104,92:0.47:196
chr20	60987737	rs6089366	C	T	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,98:0.48:203
chr20	60989185	rs10888228	C	T	4403.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:168,209:0.55:377
chr20	60990162	rs62196317	G	A	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.027;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:55,44:0.44:99
chr20	61039958	rs6061550	T	C	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr20	61040125	rs113912772	G	C	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr20	61040668	rs112618954	C	T	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr20	61041653	rs6061244	G	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr20	61041687	rs6121610	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr20	61048549	rs41305803	G	A	8129.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:395,400:0.50:795
chr20	61143487	rs3934574	T	C	9658.77	.	AC=1;AF=0.500;AN=2;DB;DP=939;set=Intersection	GT:AD:AF:DP	0/1:476,458:0.49:934
chr20	61143945	rs3934573	T	G	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-0.497;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:60,38:0.39:98
chr20	61143951	rs45612436	G	C	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=1.138;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr20	61150928	rs12624794	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr20	61150959	rs116355995	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr20	61162267	rs6062251	T	C	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	61162423	rs6062250	T	C	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	61167632	rs11483745	G	GT	3479.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:26,184:0.88:210
chr20	61167883	rs6143064	G	A	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr20	61167934	rs6143063	T	C	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	61273717	rs6122141	G	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	61289958	rs2427369	G	A	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	61292373	rs144381587	G	GAGCCCCC	2489.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	61292625	rs112272922	G	A	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:95,93:0.49:188
chr20	61296268	rs2277774	A	G	8381.77	.	AC=1;AF=0.500;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	0/1:437,423:0.49:860
chr20	61303264	rs118129127	C	T	11485.77	.	AC=1;AF=0.500;AN=2;DB;DP=1051;set=Intersection	GT:AD:AF:DP	0/1:502,541:0.52:1043
chr20	61326380	rs2427394	C	T	16767.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr20	61326636	rs13036933	G	A	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:162,159:0.50:321
chr20	61326746	rs60990764	G	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr20	61331678	rs4809531	C	A	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:150,140:0.48:290
chr20	61340558	rs6090405	C	T	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	61462004	.	A	AC	1583	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=10;HapScore=1;MGOF=38;MMLQ=28;MQ=54.76;NF=0;NR=20;PP=1583;QD=80.55;SC=ACAGTCCCCCACCCCCATGAC;SbPval=1.0;Source=Platypus;TC=31;TCF=0;TCR=31;TR=20;WE=61462050;WS=61461994;set=Platypus	GT:AD:AF:DP	1/1:11,20:0.65:31
chr20	61462009	.	C	CCACCACAGTCCCCCACCCCCCACCCCAGTCCCCAAACCCCT	890.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=3.991;QD=35.63;ReadPosRankSum=-0.259;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:2,23:0.92:25
chr20	61462011	rs57884674	T	C	901.90	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=1.611;QD=112.74;ReadPosRankSum=2.100;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr20	61462011	.	TG	CC	1900	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=1;MGOF=38;MMLQ=28;MQ=52.9;NF=0;NR=21;PP=1900;QD=93.0222797553;SC=CCCACCCCCATGACAGTCCCC;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=21;WE=61462050;WS=61461994;set=Platypus	GT:AD:AF:DP	1/0:1,21:0.95:22
chr20	61462012	rs61526618	G	C	217.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=1.611;QD=27.22;ReadPosRankSum=2.100;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr20	61462028	.	C	CA	208.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=1.465;QD=29.82;ReadPosRankSum=-1.981;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr20	61462029	.	C	CCACAGTCCCCCACCCCCT	208.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=1.282;QD=34.79;ReadPosRankSum=-1.834;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr20	61467898	rs910152	G	C	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr20	61468571	rs2294995	T	C	9507.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr20	61471925	rs74830351	C	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr20	61484142	rs73157353	A	G	21052.77	.	AC=2;AF=1.00;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr20	61485649	rs3765465	C	T	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	61488785	rs2294996	T	C	15612.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr20	61489101	rs4809262	G	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	61492362	rs187984232	C	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	61512606	rs910148	T	C	13128.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr20	61542073	rs75432726	G	T	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:125,119:0.49:244
chr20	61575188	rs11480783	C	CT	126.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=2.519;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr20	61575990	rs41304830	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr20	61577275	rs2427452	T	C	14628.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr20	61588159	rs2245341	A	G	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:168,141:0.46:309
chr20	61588745	rs2427457	C	T	5066.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:223,243:0.52:466
chr20	61594493	rs3729555	G	A	6948.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:319,319:0.50:638
chr20	61594679	rs2427463	A	G	29841.77	.	AC=2;AF=1.00;AN=2;DB;DP=1065;set=Intersection	GT:AD:AF:DP	1/1:1,1058:1.00:1059
chr20	61595537	rs2427464	A	G	7008.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.26;SOR=1.769;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr20	61595636	rs2248900	C	T	3559.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:310,195:0.39:505
chr20	61597946	rs5842409	CT	C	29791.73	.	AC=2;AF=1.00;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	1/1:0,800:1.00:800
chr20	61598899	rs3746750	A	G	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr20	61640934	rs11281878	A	AGCGGCTCCGC	842.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	61711509	.	T	A	3763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-1.703;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:167,187:0.53:354
chr20	61834695	rs6122103	G	A	9506.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:446,435:0.49:881
chr20	61847068	rs6090310	C	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:71,76:0.52:147
chr20	61867454	rs6011691	A	G	5409.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:391,269:0.41:660
chr20	61867828	rs6011692	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr20	61869223	rs6062855	T	C	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:116,133:0.53:249
chr20	61869607	rs6010878	C	A	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:100,86:0.46:186
chr20	61869826	rs2273487	C	T	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:181,205:0.53:386
chr20	61870075	rs744590	C	T	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:157,167:0.52:324
chr20	61870167	rs744591	C	A	9213.77	.	AC=1;AF=0.500;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	0/1:409,432:0.51:841
chr20	61870220	rs744592	T	C	13279.77	.	AC=1;AF=0.500;AN=2;DB;DP=1326;set=Intersection	GT:AD:AF:DP	0/1:668,653:0.49:1321
chr20	61870465	rs1075557	A	G	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:114,130:0.53:244
chr20	61870605	rs3215649	T	TG	3617.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:88,131:0.60:219
chr20	61870634	rs1075556	A	G	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:85,122:0.59:207
chr20	61872905	rs1047826	A	G	3552.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:208,180:0.46:388
chr20	61875497	rs2236186	A	C	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:163,132:0.45:295
chr20	61875513	rs41282998	A	G	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:132,101:0.43:233
chr20	61878830	rs13038098	C	T	7789.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:345,362:0.51:707
chr20	61880073	rs78017705	G	A	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:210,156:0.43:366
chr20	61880274	rs2273497	A	G	4361.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:176,202:0.53:378
chr20	61885452	rs34203226	G	T	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	61907075	rs6011712	T	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,51:0.54:94
chr20	61912715	rs2236195	T	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:116,104:0.47:220
chr20	61916379	rs13042357	C	T	4502.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:280,213:0.43:493
chr20	61917241	rs6090342	A	G	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	61918005	rs142823159	T	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr20	61918164	rs6062431	C	G	3587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=1.282;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:194,180:0.48:374
chr20	61941747	rs4809287	A	G	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:1,355:1.00:356
chr20	61943113	rs34976669	A	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr20	61946692	rs6090357	C	T	11957.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr20	61951326	rs11478836	CT	C	4197.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	61951489	rs6089881	G	C	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	61951789	rs6062891	C	T	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	61952490	rs4809533	A	G	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr20	61953365	rs1884821	T	C	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	61956782	rs2314251	T	C	12255.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr20	61960762	rs5842416	CTG	C	10020.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	61981104	rs1044397	C	T	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	61981134	rs1044396	G	A	6522.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr20	61981536	rs2229960	A	G	5815.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr20	61981554	rs2229959	C	A	7212.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr20	61982085	rs1044394	A	G	20739.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:1,768:1.00:769
chr20	61982124	rs1044393	A	G	25300.77	.	AC=2;AF=1.00;AN=2;DB;DP=955;set=Intersection	GT:AD:AF:DP	1/1:0,950:1.00:950
chr20	61982496	.	T	C	1543	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=2;HapScore=1;MGOF=56;MMLQ=20;MQ=54.27;NF=17;NR=47;PP=1543;QD=24.652675196;SC=CACGCCCACATCCACGTCCAC;SbPval=0.72;Source=Platypus;TC=72;TCF=22;TCR=50;TR=64;WE=61982510;WS=61982486;set=Platypus	GT:AD:AF:DP	1/1:8,64:0.89:72
chr20	61990874	rs6090384	T	C	15979.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr20	61992285	rs11698563	A	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr20	61992547	rs6090387	G	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	62005458	rs35318934	G	C	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:135,123:0.48:258
chr20	62038277	rs1801475	T	G	4068.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:137,182:0.57:319
chr20	62046496	rs112006486	C	CGACAGACA	13389.73	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:2,476:1.00:478
chr20	62055417	rs6089910	G	A	5755.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:339,286:0.46:625
chr20	62065293	rs369242219	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr20	62076743	rs6062939	C	A	7391.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:416,348:0.46:764
chr20	62119559	rs2750403	C	G	292.78	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	62119588	rs71799118	GC	G	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.48;QD=49.25;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	62119594	rs71792296	GC	G	1440.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.20;QD=48.02;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	62119615	rs2750402	A	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	62121702	rs310607	A	G	8122.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr20	62121726	rs310608	T	C	11355.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr20	62124459	rs12480745	G	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,42:0.45:93
chr20	62126128	rs149125493	G	C	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:124,115:0.48:239
chr20	62126185	rs310617	A	G	4394.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:272,222:0.45:494
chr20	62127121	rs310618	T	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr20	62127521	rs310619	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr20	62161161	rs45520941	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr20	62172282	rs200883545	C	T	7857.77	.	AC=1;AF=0.500;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	0/1:518,396:0.43:914
chr20	62173029	rs310656	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	62191321	rs3810477	A	G	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr20	62191475	rs3810478	T	G	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:99,99:0.50:198
chr20	62196807	rs310632	T	C	20621.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,750:1.00:750
chr20	62229302	rs139772842	C	T	4348.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:162,206:0.56:368
chr20	62236148	rs6090471	T	C	8304.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr20	62272658	rs2150910	T	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	62273352	.	A	C	106.03	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.13;QD=26.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	62273361	.	A	T	96.28	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.53;QD=32.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	62275492	rs6010985	G	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	62275844	rs6010986	T	C	6147.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	62291008	rs6089953	A	G	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	62293272	rs3848668	A	G	4789.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:292,230:0.44:522
chr20	62294062	rs12480249	G	A	4172.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:191,192:0.50:383
chr20	62294094	rs12481716	T	C	4271.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:216,199:0.48:415
chr20	62297400	rs73920935	T	C	6369.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:307,310:0.50:617
chr20	62298673	rs7261546	C	G	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr20	62304114	rs56010802	G	C	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr20	62305274	rs2297437	G	A	3671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-1.027;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:167,176:0.51:343
chr20	62309554	rs41309367	C	T	5417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.388;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:234,263:0.53:497
chr20	62311377	rs41309933	G	A	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chr20	62312299	rs2297440	T	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	62316834	rs75451331	G	T	5020.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:245,238:0.49:483
chr20	62319166	rs111622789	C	CTT	2795.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,78:0.48:161
chr20	62319207	rs143664886	C	CGGG	2032.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,54:0.41:133
chr20	62319464	rs2738785	T	C	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr20	62319604	rs2777941	A	C	21061.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr20	62320242	rs6062492	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr20	62320968	rs6062302	T	C	12290.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.309;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr20	62321655	rs2236506	G	A	17065.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:2,620:1.00:622
chr20	62322288	rs3208007	T	C	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	62323006	rs2236507	G	C	7362.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr20	62326110	rs3208008	A	C	9589.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr20	62326579	rs41309931	G	T	9767.77	.	AC=1;AF=0.500;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	0/1:405,458:0.53:863
chr20	62326670	.	TC	T	14851.73	.	AC=1;AF=0.500;AN=2;DP=967;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:505,449:0.47:954
chr20	62328375	rs2738787	A	G	8937.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:404,419:0.51:823
chr20	62328451	.	C	T	5560.77	.	AC=1;AF=0.500;AN=2;DP=499;set=Intersection	GT:AD:AF:DP	0/1:241,255:0.51:496
chr20	62332436	rs2738788	A	G	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	62332537	rs6122147	C	T	3884.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:218,182:0.46:400
chr20	62332638	rs374497353	A	AC	16787.73	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr20	62333350	.	GC	G	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.606;QD=12.65;ReadPosRankSum=1.391;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr20	62337622	rs1291211	A	G	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-2.028;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:51,38:0.43:89
chr20	62339825	rs144352421	ACGTGCC	A	741.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr20	62340115	rs1291212	C	G	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chr20	62364885	rs6011068	T	A	7680.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:407,368:0.47:775
chr20	62367377	rs2427535	A	G	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:120,90:0.43:210
chr20	62369161	rs2236511	C	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr20	62369300	rs914559	C	G	13261.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr20	62369422	rs200548769	AGGGCG	A	10747.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:94,268:0.74:362
chr20	62369426	rs150938918	C	CGGGGCG	2320.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=26.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-2.365;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:268,71:0.21:339
chr20	62369895	rs1151624	A	G	7985.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr20	62369997	rs1151625	C	T	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:132,130:0.50:262
chr20	62370349	rs1056441	T	C	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,65:0.49:134
chr20	62371833	.	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-1.877;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr20	62372706	rs4809221	G	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,63:0.53:119
chr20	62372813	rs2427536	G	A	3620.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:125,170:0.58:295
chr20	62373707	rs8957	G	T	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:148,144:0.49:292
chr20	62373983	rs2256814	G	A	6598.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:262,321:0.55:583
chr20	62374219	rs1151626	A	C	6166.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:260,278:0.52:538
chr20	62374441	rs6742	T	C	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	62378364	rs12625387	C	T	7061.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:300,333:0.53:633
chr20	62488889	rs368004706	CT	C	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.912;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:83,47:0.36:130
chr20	62517549	rs4809241	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr20	62518729	rs3795156	A	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr20	62518766	rs3795157	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:85,62:0.42:147
chr20	62520671	rs6062569	T	C	3274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=1.232;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:67,86:0.56:153
chr20	62520674	rs6010690	G	T	3283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.34;ReadPosRankSum=0.383;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:62,85:0.58:147
chr20	62559964	rs817362	G	A	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr20	62571417	rs35264801	AG	A	219.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.186;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=8.073;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.929;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:109,31:0.22:140
chr20	62571419	rs200504039	G	T	1121.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.406;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=18.259;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.986;QD=7.43;ReadPosRankSum=2.605;SOR=2.863;set=HC	GT:AD:AF:DP	0/1:77,74:0.49:151
chr20	62576991	rs2252258	G	A	3361.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:154,158:0.51:312
chr20	62578077	rs111264888	A	AT	2071.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	62594247	rs2275294	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr20	62697751	rs4809251	T	C	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	62705503	rs200974006	G	T	7760.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:367,364:0.50:731
chr20	62714783	rs6010717	C	G	9763.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr20	62715089	rs4337532	G	A	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:56,62:0.53:118
chr20	62715548	rs4431000	C	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=1.944;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:29,30:0.51:59
chr20	62724347	rs143480649	C	T	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:157,148:0.49:305
chr20	62724438	rs6010719	C	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr20	62729577	rs2295448	C	T	8732.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:347,411:0.54:758
chr20	62737028	rs186068328	G	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	62737039	.	G	C	196.90	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	62737043	.	G	A	242.84	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.77;QD=40.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	62737046	.	G	A	196.90	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	62737075	.	G	C	195.94	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.46;QD=39.19;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	62737078	.	G	GATGATGGGGGT	185.90	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.46;QD=37.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	62737139	.	GGTGA	G	2786	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=5;HapScore=2;MGOF=26;MMLQ=27;MQ=57.63;NF=26;NR=3;PP=2786;QD=20;SC=GATGATGGGGGGTGATGATGG;SbPval=0.97;Source=Platypus;TC=61;TCF=46;TCR=15;TR=29;WE=62737172;WS=62737129;set=Platypus	GT:AD:AF:DP	0/1:32,29:0.48:61
chr20	62737148	.	GGGC	G	2761	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=26;MMLQ=28;MQ=56.79;NF=25;NR=3;PP=2761;QD=20;SC=GGGTGATGATGGGCATGATGA;SbPval=1.0;Source=Platypus;TC=78;TCF=51;TCR=27;TR=28;WE=62737172;WS=62737129;set=Platypus	GT:AD:AF:DP	0/1:50,28:0.36:78
chr20	62737164	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=4;HapScore=2;MGOF=26;MMLQ=21;MQ=58.74;NF=54;NR=17;PP=2962;QD=20;SC=GATGATGGGGGTGATGGTGCC;SbPval=0.86;Source=Platypus;TC=166;TCF=114;TCR=52;TR=71;WE=62737172;WS=62737129;set=Platypus	GT:AD:AF:DP	0/1:95,71:0.43:166
chr20	62737318	rs13036542	G	A	3618.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:234,174:0.43:408
chr20	62737537	rs4809400	C	A	5765.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:285,268:0.48:553
chr20	62737568	rs4809401	T	C	6526.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:327,313:0.49:640
chr20	62744682	rs75030380	G	A	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:166,141:0.46:307
chr20	62836637	.	G	C	191	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=4;HapScore=2;MGOF=12;MMLQ=24;MQ=60.0;NF=0;NR=15;PP=191;QD=15.0514141698;SC=GCCATGTGGGGGAAGACAGAC;SbPval=1.0;Source=Platypus;TC=44;TCF=4;TCR=40;TR=15;WE=62836645;WS=62836627;set=Platypus	GT:AD:AF:DP	1/0:29,15:0.34:44
chr20	62839710	rs61746505	G	C	7171.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:325,322:0.50:647
chr20	62843542	.	GGGGGCCAGGGTGGGGGCCGTGGT	G	1990.73	.	AC=1;AF=0.500;AN=2;DP=269;set=Intersection	GT:AD:AF:DP	0/1:81,73:0.47:154
chr20	62858844	rs41279350	A	G	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:212,218:0.51:430
chr20	62859179	rs6089798	A	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr20	62959363	rs111569474	G	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	9825734	.	TTGGTGGCGCCCCGCGTGGGGCC	T	170.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=4.987;MLEAC=1;MLEAF=0.500;MQ=43.59;MQRankSum=1.688;QD=4.74;ReadPosRankSum=2.609;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr21	9825735	rs371225382	T	C	82.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.290;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.57;MQRankSum=-2.895;QD=6.90;ReadPosRankSum=-2.895;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr21	9825838	.	T	C	1018.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-0.235;QD=4.90;ReadPosRankSum=0.215;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:149,59:0.28:208
chr21	9825939	.	T	C	4058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=2116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.75;MQRankSum=-8.307;QD=1.93;ReadPosRankSum=2.781;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:1691,416:0.20:2107
chr21	9825966	.	A	C	4929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DP=2409;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=46.33;MQRankSum=-8.519;QD=2.05;ReadPosRankSum=0.542;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:1922,487:0.20:2409
chr21	9826301	rs374753985	T	C	34222.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.642;ClippingRankSum=0.000;DB;DP=1329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.05;MQRankSum=-0.406;QD=25.79;ReadPosRankSum=0.875;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:7,1320:0.99:1327
chr21	10793771	rs200837359	A	G	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.554;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.984;QD=11.19;ReadPosRankSum=1.058;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr21	10793776	rs368569117	GGAGTT	G	178.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-3.602;QD=2.38;ReadPosRankSum=-1.053;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:65,10:0.13:75
chr21	10793781	rs113770789	T	G	954.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr21	10793789	.	GCAGAATGGAA	G	960.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=6.588;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.931;QD=9.70;ReadPosRankSum=-0.018;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:70,29:0.29:99
chr21	10793822	rs143361187	G	T	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.901;QD=9.45;ReadPosRankSum=0.065;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:114,45:0.28:159
chr21	10793825	rs139250106	T	A	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=1.275;QD=9.06;ReadPosRankSum=0.057;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:119,47:0.28:166
chr21	10793860	.	T	TGG	1365.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.347;QD=5.12;ReadPosRankSum=0.128;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:220,47:0.18:267
chr21	10793861	rs28362110	A	G	3148.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=11.41;ReadPosRankSum=2.998;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:170,106:0.38:276
chr21	10793885	rs200167075	A	T	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=6.316;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.928;QD=3.68;ReadPosRankSum=2.434;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:296,53:0.15:349
chr21	10793891	rs28490105	T	G	5233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.771;QD=14.34;ReadPosRankSum=0.138;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:160,205:0.56:365
chr21	10793906	rs146787155	G	C	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=4.314;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.985;QD=3.00;ReadPosRankSum=-0.620;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:330,52:0.14:382
chr21	10793912	rs200243265	A	G	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=4.305;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.007;QD=3.02;ReadPosRankSum=-1.797;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:331,51:0.13:382
chr21	10793961	.	T	TGAATGGAATGGACTC	2091.73	.	AC=1;AF=0.500;AN=2;DP=259;set=Intersection	GT:AD:AF:DP	0/1:139,61:0.30:200
chr21	10794022	rs28971978	A	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr21	10794036	rs201523887	C	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.632;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:68,13:0.16:81
chr21	10794047	rs28970391	G	A	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.37;ReadPosRankSum=-1.999;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:37,27:0.42:64
chr21	10794051	rs200584440	T	C	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.147;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-2.382;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:36,27:0.43:63
chr21	10794052	rs74672900	G	A	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=-2.054;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr21	10794061	.	GGAATGGAATGGAATGGAATA	G	2986	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=1;MGOF=86;MMLQ=24;MQ=54.99;NF=1;NR=17;PP=2986;QD=20;SC=TGGATGGAATGGAATGGAATG;SbPval=0.51;Source=Platypus;TC=51;TCF=2;TCR=49;TR=18;WE=10794088;WS=10793996;set=Platypus	GT:AD:AF:DP	1/0:33,18:0.35:51
chr21	10862598	rs3916646	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.560;QD=0.61;ReadPosRankSum=0.538;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:428,66:0.13:494
chr21	10862599	rs3883945	C	T	7745.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:296,207:0.41:503
chr21	10862618	rs3916251	T	C	8305.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:347,236:0.40:583
chr21	10862846	rs3916645	A	T	24057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.818;ClippingRankSum=0.000;DB;DP=838;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-5.433;QD=28.78;ReadPosRankSum=0.007;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:131,705:0.84:836
chr21	10862846	.	ATCACCAG	TTCACCAA,TTCACCAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=28;MQ=57.84;NF=196,401;NR=156,290;PP=2944,2962;QD=20;SC=TGGATACACCATCACCAGCTA;SbPval=0.41;Source=Platypus;TC=821;TCF=472;TCR=349;TR=352,691;WE=10862861;WS=10862836;set=Platypus	GT:AF:DP	0/1:0.43:821
chr21	10862853	rs1961808	G	A	14300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.570;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-13.174;QD=16.38;ReadPosRankSum=1.062;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:480,393:0.45:873
chr21	10862874	rs1807747	A	G	15125.77	.	AC=1;AF=0.500;AN=2;DB;DP=990;set=Intersection	GT:AD:AF:DP	0/1:545,443:0.45:988
chr21	10862947	rs3883944	G	A	11503.77	.	AC=1;AF=0.500;AN=2;DB;DP=1366;set=Intersection	GT:AD:AF:DP	0/1:802,562:0.41:1364
chr21	10863087	rs28521368	T	G	16974.77	.	AC=1;AF=0.500;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	0/1:138,699:0.84:837
chr21	10863155	rs28501310	G	T	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:218,157:0.42:375
chr21	10907041	rs12627379	C	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-1.125;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:353,50:0.12:403
chr21	10908767	rs4913632	C	T	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr21	10910253	rs1828001	G	T	5143.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:212,234:0.52:446
chr21	10910291	rs150480	C	T	10924.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:168,479:0.74:647
chr21	10910311	rs9996	T	G	13378.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:194,566:0.74:760
chr21	10910340	rs62211191	C	G	5647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-8.023;QD=6.90;ReadPosRankSum=1.188;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:524,295:0.36:819
chr21	10910347	rs150482	A	G	21814.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:2,800:1.00:802
chr21	10914285	rs62211195	G	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:80,62:0.44:142
chr21	10916226	rs61365894	A	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr21	10916290	rs61249862	T	C	2456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-3.809;QD=11.53;ReadPosRankSum=1.396;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:103,110:0.52:213
chr21	10916293	rs150483	A	G	5536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-4.579;QD=25.63;ReadPosRankSum=0.441;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:58,158:0.73:216
chr21	10916322	rs210506	G	A	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:124,135:0.52:259
chr21	10919969	rs4913680	C	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:85,84:0.50:169
chr21	10920041	rs4913553	C	T	3646.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:209,171:0.45:380
chr21	10920067	rs4913681	T	C	3761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-0.338;QD=9.77;ReadPosRankSum=-0.772;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:203,182:0.47:385
chr21	10920098	rs212146	T	C	8588.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr21	10920176	rs62211225	G	T	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:74,49:0.40:123
chr21	10920205	rs185347636	T	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr21	10921862	.	T	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=1.329;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:176,31:0.15:207
chr21	10935004	rs6582917	A	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:145,95:0.40:240
chr21	10935116	rs625018	T	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr21	10941784	rs60630159	AT	A	1301.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr21	10942036	rs2019999	T	A	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:72,92:0.56:164
chr21	10942601	rs1810855	C	T	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:148,77:0.34:225
chr21	10942756	rs1810540	G	A	10430.77	.	AC=1;AF=0.500;AN=2;DB;DP=1060;set=Intersection	GT:AD:AF:DP	0/1:541,511:0.49:1052
chr21	10942924	rs113444703	CCTT	C	3374.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:89,88:0.50:177
chr21	10943003	rs1810856	C	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:148,101:0.41:249
chr21	10943038	rs2020014	C	A	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:141,95:0.40:236
chr21	10959771	rs111657679	A	T	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-0.505;QD=6.14;ReadPosRankSum=0.346;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:197,106:0.35:303
chr21	10959858	rs8132579	G	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr21	10968966	.	A	C	319.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr21	10969047	rs201274376	C	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;MQ=59.86;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chr21	10971453	rs1739180	T	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr21	10973787	rs469953	T	A	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:180,124:0.41:304
chr21	10973798	rs469961	T	C	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:158,107:0.40:265
chr21	10998165	rs364232	C	A	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	11026874	.	G	T	103	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=3;MGOF=9;MMLQ=27;MQ=46.22;NF=6;NR=0;PP=103;QD=22.9618687579;SC=AACATTCTGTGACAGCCCAAA;SbPval=1.0;Source=Platypus;TC=17;TCF=16;TCR=1;TR=6;WE=11026882;WS=11026865;set=Platypus	GT:AD:AF:DP	0/1:11,6:0.35:17
chr21	11027065	.	C	A	580.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr21	11027085	rs6421268	A	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr21	11027129	rs4577378	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr21	11038649	rs28565510	C	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.32;MQRankSum=1.964;QD=2.25;ReadPosRankSum=-1.403;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr21	11038700	rs199845011	T	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr21	11038722	rs62209718	C	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:71,48:0.40:119
chr21	11038843	rs10433076	G	C	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:155,113:0.42:268
chr21	11038868	rs67736403	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:210,49:0.19:259
chr21	11038909	rs28473122	G	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:267,83:0.24:350
chr21	11038957	rs10433077	T	C	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=5.245;MLEAC=1;MLEAF=0.500;MQ=51.01;MQRankSum=-6.416;QD=0.60;ReadPosRankSum=-0.888;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:414,66:0.14:480
chr21	11038967	rs28692944	T	C	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=5.158;MLEAC=1;MLEAF=0.500;MQ=50.46;MQRankSum=-5.977;QD=3.10;ReadPosRankSum=1.023;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:384,113:0.23:497
chr21	11038970	rs594457	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.684;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=5.187;MLEAC=1;MLEAF=0.500;MQ=50.22;MQRankSum=-5.867;QD=0.99;ReadPosRankSum=0.278;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:427,74:0.15:501
chr21	11039055	rs28538601	A	G	2956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=53.53;MQRankSum=-0.296;QD=4.57;ReadPosRankSum=0.818;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:472,175:0.27:647
chr21	11039079	rs3888469	C	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-1.462;QD=0.94;ReadPosRankSum=-2.006;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:496,85:0.15:581
chr21	11039091	rs28572631	T	A	2845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.428;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-0.161;QD=4.77;ReadPosRankSum=1.681;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:426,170:0.29:596
chr21	11039142	rs2537265	T	A	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.328;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-4.210;QD=3.31;ReadPosRankSum=-1.822;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:484,87:0.15:571
chr21	11039152	rs2740231	A	C	1942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.873;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-1.428;QD=3.39;ReadPosRankSum=-1.143;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:490,83:0.14:573
chr21	11049364	rs468502	C	T	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-1.199;QD=2.50;ReadPosRankSum=-1.461;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:174,38:0.18:212
chr21	11049395	rs467462	T	C	5654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.812;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=0.409;QD=21.42;ReadPosRankSum=-0.125;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:108,156:0.59:264
chr21	11049404	rs2259244	C	G	2709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.579;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=6.214;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-0.310;QD=10.30;ReadPosRankSum=-0.050;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:148,115:0.44:263
chr21	11049461	rs28483076	G	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=52.44;MQRankSum=-1.703;QD=4.28;ReadPosRankSum=0.393;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:190,66:0.26:256
chr21	11049495	rs28640965	C	A	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.303;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=45.88;MQRankSum=-0.194;QD=4.79;ReadPosRankSum=1.872;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:160,54:0.25:214
chr21	11049503	rs7280925	T	A	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.764;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=43.38;MQRankSum=-0.493;QD=2.81;ReadPosRankSum=0.192;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:177,39:0.18:216
chr21	11049516	rs468629	G	A	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.92;QD=36.37;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr21	11049596	rs28571918	C	T	2326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=51.14;MQRankSum=-2.624;QD=3.41;ReadPosRankSum=-0.170;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:521,161:0.24:682
chr21	11049621	rs28441174	G	A	5246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=52.00;MQRankSum=-2.398;QD=7.54;ReadPosRankSum=0.406;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:532,164:0.24:696
chr21	11049623	rs28537865	T	C	5248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=52.01;MQRankSum=-2.462;QD=7.55;ReadPosRankSum=0.666;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:531,164:0.24:695
chr21	11049664	rs28594857	T	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=-3.730;QD=1.16;ReadPosRankSum=0.400;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:428,78:0.15:506
chr21	11058119	rs2261873	C	T	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr21	11058226	rs4913558	G	C	3194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=4.776;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=-1.033;QD=9.23;ReadPosRankSum=0.964;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:186,160:0.46:346
chr21	11058227	rs2775343	T	A	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.315;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=5.054;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-10.963;QD=2.30;ReadPosRankSum=-5.531;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:313,40:0.11:353
chr21	11058229	rs55883018	T	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.611;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=6.890;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-11.474;QD=2.31;ReadPosRankSum=-5.708;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:319,45:0.12:364
chr21	11058340	rs28617310	A	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.841;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=3.944;MLEAC=1;MLEAF=0.500;MQ=50.67;MQRankSum=-5.805;QD=0.25;ReadPosRankSum=1.451;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:273,42:0.13:315
chr21	11058349	rs209032	T	G	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=14.314;MLEAC=1;MLEAF=0.500;MQ=50.54;MQRankSum=4.737;QD=3.54;ReadPosRankSum=-0.562;SOR=1.482;set=HC	GT:AD:AF:DP	0/1:220,70:0.24:290
chr21	11058404	rs58094605	A	ACT	1413.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr21	11059734	rs75838613	C	T	353.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-0.373;QD=7.86;ReadPosRankSum=-0.934;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr21	11059735	rs2775349	T	C	871.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-0.794;QD=19.37;ReadPosRankSum=-0.914;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:17,28:0.62:45
chr21	11059736	rs7279429	G	A	112.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-3.786;QD=2.51;ReadPosRankSum=0.172;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr21	11059744	rs57566895	A	G	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-3.958;QD=22.29;ReadPosRankSum=-2.737;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr21	11059760	rs79990900	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-1.864;QD=2.14;ReadPosRankSum=0.708;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr21	11059835	rs78388735	A	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-3.338;QD=1.66;ReadPosRankSum=-0.294;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr21	11059845	rs7364036	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr21	11059853	rs75278999	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-1.778;QD=0.88;ReadPosRankSum=-0.893;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:56,6:0.10:62
chr21	11059854	rs75079963	A	G	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-3.049;QD=7.32;ReadPosRankSum=-2.251;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr21	11059877	rs7364059	T	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr21	11059951	rs75112368	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-1.339;QD=1.29;ReadPosRankSum=-1.361;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr21	11060013	rs2838200	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-3.481;QD=14.66;ReadPosRankSum=1.451;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr21	11060024	.	C	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=7.489;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-1.681;QD=1.99;ReadPosRankSum=-0.658;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr21	11060026	rs57279991	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-1.576;QD=2.40;ReadPosRankSum=-0.449;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr21	11060029	rs112803135	A	AAAAAT	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=-3.782;QD=13.38;ReadPosRankSum=2.164;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr21	11098674	rs1752238	T	C	7485.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr21	14756428	.	T	TAC	240.73	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.09;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	14756449	.	A	ATGTG	265.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.53;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr21	14756794	rs2792526	G	A	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	14757043	rs2257596	T	C	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	14760151	rs2775777	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	14760203	rs2775779	C	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	14766093	rs2775805	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	14771323	.	TTC	T	1222.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.03;QD=43.67;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	14771327	.	T	TGC	1222.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.51;QD=43.67;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	14778811	rs112146711	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	14917181	rs62215474	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:87,58:0.40:145
chr21	15373420	rs1297087	C	A	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr21	15516976	rs7283442	T	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	15524843	rs57726121	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	15596772	rs409782	T	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	15596882	rs410052	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	15599118	rs2822443	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr21	15599144	rs2822444	T	C	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	15599466	rs7280643	A	G	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr21	15646397	rs8129984	A	G	168.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	15652069	rs2254297	A	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	15659778	rs1014538	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr21	15660716	rs1153305	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr21	15663777	rs34559607	A	AGTGTGT	380.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr21	15671844	rs2822558	G	A	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-1.098;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:63,109:0.63:172
chr21	15748186	rs2822642	C	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr21	15755349	rs7281846	T	C	4840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=-2.334;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:98,224:0.70:322
chr21	15870638	rs2274796	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr21	15884949	rs3761320	A	T	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.14;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	15884949	.	ACATTGA	TCATTGA,TCATTGT	279	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=8,2;NR=29,15;PP=268,279;QD=8.18300574452;SC=ACAGAGATGTACATTGAGTAC;SbPval=0.55;Source=Platypus;TC=37;TCF=8;TCR=29;TR=37,17;WE=15884963;WS=15884939;set=Platypus	GT:AF:DP	0/1:1.00:37
chr21	15884955	rs3761321	A	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.811;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr21	15884974	rs10679308	C	CAAG	598.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr21	15893567	rs760344	A	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr21	15893594	rs760345	T	C	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	15954528	rs2822785	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:78,51:0.40:129
chr21	15954593	rs2822786	G	A	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:70,99:0.59:169
chr21	15954660	rs2822787	T	C	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr21	15964920	rs466913	C	G	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	15966421	rs460852	T	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	15974409	rs456067	T	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	15984864	rs1292581	G	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr21	15984982	rs2822809	C	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-1.860;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr21	15991786	rs1292586	C	G	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	16015250	rs458292	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr21	16340289	rs2229741	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:85,63:0.43:148
chr21	17135395	rs17275483	A	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr21	17221976	rs17275518	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr21	17238521	rs147076784	AAT	A	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr21	17533075	rs147455337	T	TTTCTTC	969.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.19;QD=46.18;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	17560174	rs10629120	T	TTCCTTCCC	1961.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.23;QD=45.62;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	18902700	rs143120666	G	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr21	19165942	rs2824493	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr21	19169155	rs1047978	G	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:140,71:0.34:211
chr21	19190427	rs243556	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	19506579	rs2824645	A	G	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-2.134;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr21	19506651	rs2824646	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr21	19506694	rs9977750	T	G	2986.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr21	19506715	rs2824647	C	T	3097.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:66,86:0.57:152
chr21	19642285	rs7276699	G	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr21	19647472	rs2824713	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.77;ReadPosRankSum=-0.727;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr21	19653342	rs3215891	AT	A	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=0.297;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr21	19666526	rs6517807	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	19666530	rs4395327	T	C	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	19666901	rs1540000	T	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	19670118	rs2824721	G	A	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	19685405	rs7281534	A	G	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,67:0.54:125
chr21	19687376	rs2144203	G	A	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	19704296	rs1155847	C	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	19716247	rs368798563	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr21	19744415	rs71318139	A	ATGTG	809.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	19756040	rs2824790	C	G	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:51,106:0.68:157
chr21	19770734	.	G	C	25	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=25;QD=29.8856062736;SC=TAGAAGTAAAGCTCTCGCCTG;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=2;WE=19770742;WS=19770724;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr21	20058298	rs6517825	C	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	22371166	rs6518017	G	A	211.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	22643720	rs8127865	A	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	22652720	rs9306013	C	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	22653099	rs1012523	G	A	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	22656409	rs34246223	AT	A	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	22658484	.	A	G	339.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr21	22658544	rs111713483	TTTTGTGA	T	2287.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	22696837	rs232467	C	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	22696881	rs11334381	TG	T	1403.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	22804674	rs2826833	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr21	22840930	rs2250501	A	C	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr21	22841123	rs2250508	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr21	22910116	rs2826891	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=0.319;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr21	22910123	rs9979040	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=0.319;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr21	26960189	rs2829806	T	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	26961086	rs2829807	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	26965100	rs2829809	C	A	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	26965148	rs1135638	G	A	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	26965205	rs1057885	T	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	26966317	rs13048408	A	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	26969703	rs1135618	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	26973663	rs140202502	A	ATATACT	5200.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	26976250	rs7278164	A	G	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	26978950	rs3989369	A	G	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	26979628	rs9653688	G	A	9971.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr21	27056099	rs2829863	C	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr21	27086618	.	A	G	219.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr21	27141273	rs56048433	C	CATTT	1927.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	27254194	rs2829966	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr21	27326859	rs2829997	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	27327100	rs417676	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	27327862	rs2251337	G	C	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	27328175	rs440666	T	C	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	27369481	rs2051504	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	27382362	rs11455808	A	AG	3745.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	27382417	rs2409166	C	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	27423561	rs2070655	G	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr21	27852724	rs966410	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:99,43:0.30:142
chr21	28210657	rs229042	T	C	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr21	28210854	rs56251528	C	T	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.168;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:250,90:0.26:340
chr21	28212760	rs436525	G	A	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:41,74:0.64:115
chr21	28215619	rs422381	T	C	280.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr21	28215826	rs373460567	C	CACA	2030.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr21	28215836	rs3838077	GC	G	1570.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr21	28215987	rs417301	T	C	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr21	28216038	rs422803	C	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr21	28216066	rs370850	C	T	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-1.783;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr21	28216240	rs451792	G	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr21	28216299	rs428616	T	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr21	28216445	rs408358	A	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr21	28216595	rs428785	C	G	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr21	28216692	rs445784	G	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:43,87:0.67:130
chr21	28217178	rs434857	T	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:52,81:0.61:133
chr21	28217320	rs402007	C	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr21	28296324	rs151065	A	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	28302355	rs226794	A	G	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	28305324	rs146717299	C	T	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:55,102:0.65:157
chr21	28307173	rs162495	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.385;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr21	28326276	rs233894	G	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	30250555	rs2205446	T	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	30250615	rs2205447	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	30250812	rs2205448	T	C	148.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	30252088	rs2205449	T	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	30254695	rs2254507	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	30257418	rs1997605	G	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	30257560	rs1997606	C	G	9294.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr21	30257568	rs1997607	T	C	9376.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr21	30257729	rs2859734	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	30318134	rs77917057	A	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:131,57:0.30:188
chr21	30324755	rs2832146	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	30338293	rs5843357	G	GC	808.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	30357307	rs2245434	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	30365322	rs2249028	G	A	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	30391671	.	GAA	G	153.75	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	30400110	rs8133768	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	30414724	rs2254872	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	30442475	rs2183569	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	30442481	rs2183570	C	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	30445961	rs2012645	G	A	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	30830393	rs9981313	T	G	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.07;ReadPosRankSum=-0.769;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,50:0.77:65
chr21	30925853	rs112669361	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=7.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.567;SOR=2.391;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr21	30933893	rs78719925	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr21	30969901	rs363431	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr21	30970005	rs363465	C	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr21	31026967	rs10637196	A	AAAAG	992.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr21	31233814	rs468206	A	G	140.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	31233892	.	GGGATT	G	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.43;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	31233898	.	A	AACCAACACT	952.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.93;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	31233900	rs55707309	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.56;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	31233904	rs142587327	G	GT	943.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	31233994	rs468413	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	31655212	rs1557291	A	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	31709691	rs2244485	G	A	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	31720287	rs762377	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	31744127	rs877346	A	T	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	31802768	rs2226548	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:104,46:0.31:150
chr21	31803159	rs1539783	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr21	31803210	rs1539784	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr21	31812772	rs2832873	C	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:94,46:0.33:140
chr21	31869286	rs2298437	T	C	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:180,118:0.40:298
chr21	31913981	rs5843453	AG	A	2499.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:183,72:0.28:255
chr21	31914000	rs1023364	T	A	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:213,84:0.28:297
chr21	31933726	rs1702401	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr21	31964916	rs9305426	A	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:192,78:0.29:270
chr21	31973342	rs198913	C	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.943;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.73;ReadPosRankSum=-1.210;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr21	31973405	rs198914	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr21	31973516	rs198915	T	A	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	31973645	rs6147476	G	GTGTTATTTATAATAATGA	667.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr21	31973685	rs1961491	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr21	31992864	rs1702405	A	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	32015170	rs198873	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr21	32201822	rs9982910	G	T	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	32201835	rs9982675	A	C	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	32201866	rs9982755	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr21	32201951	rs9982775	A	G	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	32201969	rs35359062	GA	G	5226.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	32202106	rs2833118	T	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	32434766	rs2070405	C	T	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr21	32524852	rs9305453	A	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	32525302	rs723470	A	C	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr21	32525345	rs723469	G	A	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr21	32526525	rs12482307	C	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=0.209;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:36,46:0.56:82
chr21	32575405	rs2833335	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr21	32585809	rs2244187	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr21	32597972	rs11373053	C	CAA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.501;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr21	32598003	rs2070416	A	T	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-2.235;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:32,28:0.47:60
chr21	32638549	rs2070417	CC	AT	6636.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;JOINED;set=Intersection	GT:AD:AF:DP	0/1:260,179:0.41:439
chr21	32638963	rs34882418	G	A	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:115,107:0.48:222
chr21	33057312	rs367618143	TG	T	218.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	33068937	rs78537042	C	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.171;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:47,34:0.42:81
chr21	33073125	rs8132845	A	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr21	33073985	rs204734	T	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	33081663	.	CA	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.576;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr21	33355760	rs737103	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr21	33368188	rs2070371	T	C	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:83,67:0.45:150
chr21	33370900	rs9305483	T	C	3166.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:164,153:0.48:317
chr21	33371508	rs2073360	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:106,76:0.42:182
chr21	33371540	rs2070372	T	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr21	33671479	rs2254251	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr21	33684415	rs2833761	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr21	33688865	rs7279896	A	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:180,104:0.37:284
chr21	33690293	rs2070380	C	A	187.78	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr21	33691502	rs11402028	G	GC	756.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	33691754	rs958828	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr21	33694224	rs3761342	C	G	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr21	33694257	rs2833765	A	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:117,57:0.33:174
chr21	33697000	rs2070377	G	A	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr21	33710001	rs13046776	C	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr21	33711229	rs9978210	G	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr21	33713885	rs2833778	T	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr21	33717877	rs2833779	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr21	33719400	rs9981151	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr21	33719695	rs2070378	C	T	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr21	33721843	rs743306	T	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	33726201	rs2298363	C	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	33730013	rs7283283	T	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.155;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr21	33730056	rs8133439	G	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr21	33734410	rs8127715	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.042;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr21	33738861	rs10222082	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr21	33738920	rs10222086	G	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.753;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr21	33740637	rs7276783	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	33740676	rs7277593	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr21	33740702	rs11323440	GT	G	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr21	33749533	rs4816431	A	C	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	33755763	rs2833795	G	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.160;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:62,18:0.23:80
chr21	33757947	rs58978310	A	T	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-1.095;QD=7.02;ReadPosRankSum=-2.730;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:124,75:0.38:199
chr21	33765320	rs374019516	AGGAAGAGGCGGGGCTGGC	A	663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.101;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:39,21:0.35:60
chr21	33765496	rs112644530	A	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr21	33765560	rs11702306	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr21	33830006	rs55878843	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr21	33839992	rs111977143	T	G	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.836;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:35,88:0.72:123
chr21	33840208	rs4816434	A	G	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr21	33840213	rs112923132	A	AAT	722.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:1,18:0.95:19
chr21	33840317	rs34740520	C	CATAT	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr21	33867280	rs2096458	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr21	33997466	rs701730	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr21	34003928	rs71640263	A	AAGTATT	2095.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:133,58:0.30:191
chr21	34014192	rs11702774	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr21	34014283	rs2833929	C	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr21	34018437	rs844978	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr21	34050937	.	AAT	A	1263	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=3;HapScore=3;MGOF=1;MMLQ=23;MQ=60.29;NF=11;NR=8;PP=1263;QD=67.8421052632;SC=TAACAAATAAAATATAAAGTG;SbPval=0.72;Source=Platypus;TC=59;TCF=31;TCR=28;TR=19;WE=34050950;WS=34050927;set=Platypus	GT:AD:AF:DP	0/1:40,19:0.32:59
chr21	34050939	rs201012663	TA	T	1205.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.935;QD=12.56;ReadPosRankSum=0.720;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:62,34:0.35:96
chr21	34050941	rs150500694	TA	T	1205.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.982;QD=11.48;ReadPosRankSum=0.564;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:69,36:0.34:105
chr21	34050942	.	A	T	1255	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=3;MGOF=1;MMLQ=20;MQ=60.2;NF=22;NR=9;PP=1255;QD=41.6055229854;SC=AATAAAATATAAAGTGCACAT;SbPval=0.6;Source=Platypus;TC=93;TCF=65;TCR=28;TR=31;WE=34050950;WS=34050927;set=Platypus	GT:AD:AF:DP	0/1:62,31:0.33:93
chr21	34059352	rs2254562	T	C	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.652;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr21	34127438	rs5843565	TA	T	233.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.61;ReadPosRankSum=-1.282;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr21	34128717	rs7279405	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr21	34157235	rs35174687	GT	G	504.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr21	34165864	rs2231391	C	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	34166190	rs74617086	A	T	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	34166343	rs2231390	C	T	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr21	34169181	rs762228	A	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;MQ=60.93;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	34169317	rs72564613	C	CT	1876.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	34223997	rs12626270	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr21	34399401	rs762178	A	G	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:106,138:0.57:244
chr21	34400146	rs9982080	G	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-1.452;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr21	34538065	rs11444667	C	CT	2252.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	34540594	rs11379155	C	CT	1719.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	34542356	rs2834118	A	G	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr21	34602794	rs17860118	G	T	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:189,101:0.35:290
chr21	34602934	rs12482556	T	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:177,73:0.29:250
chr21	34614250	rs2229207	T	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-1.899;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr21	34614255	rs1051393	T	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.686;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:59,16:0.21:75
chr21	34617213	rs2834158	T	C	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:44,76:0.63:120
chr21	34617729	rs2252639	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr21	34617950	rs2252650	A	T	366.03	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr21	34624386	rs71894734	CATCT	C	801.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr21	34624917	rs2236757	A	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr21	34634878	rs1131668	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr21	34635053	rs3216172	G	GT	623.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:62,25:0.29:87
chr21	34635065	rs9984273	C	T	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.42;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	34635079	rs34865572	CT	C	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=6.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.226;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr21	34640788	rs2834167	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr21	34655334	rs373396776	GA	G	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.411;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr21	34666111	rs139112783	CAA	C	379.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.73;ReadPosRankSum=-0.223;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr21	34666160	rs999261	A	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr21	34666376	rs1467845	A	G	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	34666390	rs999260	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr21	34668747	rs3171425	A	G	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:63,146:0.70:209
chr21	34668976	rs8178562	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr21	34697264	rs2850015	T	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	34726127	rs2856973	T	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	34775721	rs17882748	T	C	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	34787312	rs9808753	A	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr21	34793638	rs11458804	C	CA	31.93	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=6.39;ReadPosRankSum=0.524;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr21	34793706	rs2834214	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr21	34799084	.	C	CTA	42	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=1;MGOF=7;MMLQ=28;MQ=60.0;NF=3;NR=1;PP=42;QD=12.75;SC=TCTACACCCACTATATATATA;SbPval=0.22;Source=Platypus;TC=17;TCF=16;TCR=1;TR=4;WE=34799093;WS=34799074;set=Platypus	GT:AD:AF:DP	0/1:13,4:0.24:17
chr21	34799350	rs11910627	C	G	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr21	34804966	rs1532	T	C	2042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=-0.747;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:40,94:0.70:134
chr21	34809049	rs2040120	T	A	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-1.410;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:26,40:0.61:66
chr21	34823252	rs2834220	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr21	34837623	rs2248820	C	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr21	34837786	rs2243511	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr21	34839533	rs743334	A	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr21	34851046	.	C	G	218.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr21	34871107	rs140133985	ATT	A	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=0.254;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr21	34871133	rs7278879	C	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	34889190	.	T	C	48.77	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr21	34889505	rs79178050	A	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr21	34893344	rs2834233	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr21	34894623	rs2834234	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	34897113	rs8788	C	T	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr21	34900924	rs5843611	G	GA	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.559;QD=7.87;ReadPosRankSum=1.041;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr21	34901062	rs57178645	TA	T	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.325;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr21	34902053	rs148913441	CT	GG	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr21	34903875	.	AT	A	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.385;QD=2.44;ReadPosRankSum=1.342;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:54,28:0.34:82
chr21	34915324	rs1041745	CG	GC	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	34925142	rs13433428	C	T	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	34925263	rs148591619	A	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,70:0.58:121
chr21	34926260	rs13047599	C	T	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr21	34948684	rs34377180	G	GA	1842.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	34948696	rs34373121	GA	G	1959.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	34954602	rs77179527	AG	A	1195.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	34959776	rs7283856	G	A	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	34968503	rs2834240	A	G	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr21	34969423	rs3761351	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	35012719	rs6517185	GG	CT	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	35124253	rs2834255	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	35127735	rs2154434	C	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	35134084	rs11444980	G	GC	2614.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	35138326	rs2248815	A	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:153,89:0.37:242
chr21	35174897	rs11390596	T	TA	134.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr21	35201947	rs1108000	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.09;ReadPosRankSum=-1.668;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr21	35206880	rs2248321	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr21	35228953	rs9305535	A	G	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,46:0.82:56
chr21	35229027	rs141163237	TTG	T	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.730;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr21	35237349	rs9984732	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr21	35237608	rs9976801	T	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr21	35239734	rs73900386	C	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=0.829;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr21	35247611	rs2298681	G	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	35247873	rs933130	C	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	35256000	rs13052780	T	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr21	35260418	rs67686176	TGGTCCCTC	T	334.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr21	35260481	rs2073370	T	C	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=-1.278;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr21	35275955	rs9980730	G	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	35278919	rs3831798	A	ACT	892.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr21	35281393	rs4591	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	35281421	rs4842	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.215;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr21	35284734	rs2211873	A	G	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	35446136	rs79607614	C	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	35467372	rs11295804	AC	A	542.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	35467472	rs11295803	AG	A	3855.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	35467645	rs8129891	A	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	35469193	rs4817617	C	A	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	35469708	rs35685523	G	GA	226.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	35774491	rs72279748	AT	A	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.131;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr21	35788234	rs188602616	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr21	35893642	rs11700452	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:63,36:0.36:99
chr21	35895967	rs200690664	G	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr21	35896032	rs6517239	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr21	35985895	rs915540	C	T	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr21	36041978	rs7280973	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	36042203	rs9680380	G	C	32.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr21	36079735	.	G	GCACACA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.813;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr21	36080204	rs6517253	A	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	36080398	rs2070368	T	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr21	36080908	rs2834597	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr21	36081626	rs3819041	C	G	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr21	36164405	rs13051066	G	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	36165041	rs11700756	T	C	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	36193871	rs2018329	T	C	160.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr21	36206932	rs11702841	G	A	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	36410869	rs370849672	CCTCTCTCTCTCT	C	218.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr21	36410910	rs8126848	C	G	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=1.450;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr21	36410948	rs145814354	TAG	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=2.031;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr21	36422282	rs71324342	A	AAC	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=12.386;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.468;QD=5.33;ReadPosRankSum=0.428;SOR=2.647;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr21	37092893	rs145510550	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.784;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr21	37092980	rs9981293	G	A	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	37408608	rs68024241	AACGT	A	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	37412752	rs2255858	T	C	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr21	37413946	rs2835243	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	37414194	rs11404455	C	CA	55	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	37420785	rs880221	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	37425955	rs762360	C	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	37425971	rs762361	C	T	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	37429679	rs7282629	G	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	37431265	rs2051395	G	T	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	37443157	rs28637634	T	G	722.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=22.788;MLEAC=2;MLEAF=1.000;MQ=62.13;MQRankSum=0.817;QD=36.14;ReadPosRankSum=2.439;SOR=5.889;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr21	37443164	rs2239859	T	G	670.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.761;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=37.771;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.959;QD=31.91;ReadPosRankSum=2.973;SOR=5.781;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr21	37443480	rs1005696	T	G	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	37443565	rs1005695	G	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	37444823	.	C	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.250;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:93,15:0.14:108
chr21	37507501	rs8133052	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr21	37507745	rs881711	C	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	37507769	rs881712	C	T	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	37509995	rs12626192	C	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	37518362	rs2835286	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	37571667	rs7281674	T	A	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	37572810	rs9979031	G	A	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	37580881	rs2835320	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	37586236	rs73202247	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	37586877	rs2850079	T	C	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr21	37599824	rs7280662	T	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr21	37599849	.	AAAG	A	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=-0.000;QD=3.36;ReadPosRankSum=-1.207;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr21	37602786	rs142436455	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:79,42:0.35:121
chr21	37609571	rs2835322	T	C	4216.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:83,192:0.70:275
chr21	37617630	rs4817788	T	G	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr21	37617724	rs3746866	C	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:133,65:0.33:198
chr21	37619724	rs1023367	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:76,49:0.39:125
chr21	37619931	rs5843755	A	AT	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.247;QD=6.09;ReadPosRankSum=0.598;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:54,41:0.43:95
chr21	37649170	rs7279450	A	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr21	37650182	rs2070516	C	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr21	37650235	rs2070517	T	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr21	37653705	rs7277281	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr21	37660161	rs2268299	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr21	37661180	rs9979272	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr21	37664372	rs9977791	C	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr21	37664501	rs9978057	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.795;QD=14.32;ReadPosRankSum=2.611;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr21	37664554	.	C	CTT	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.623;QD=10.85;ReadPosRankSum=-0.905;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr21	37664571	rs9978153	G	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr21	37706065	.	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.898;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr21	37728892	rs141327973	C	CTTGAA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-1.200;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr21	37729088	rs2835339	G	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.119;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr21	37749689	rs2850081	C	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr21	37760118	.	C	CT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.045;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr21	37784070	rs218630	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;MQ=57.38;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	37787572	.	CT	C	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.804;QD=1.35;ReadPosRankSum=-1.454;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:167,46:0.22:213
chr21	37833751	rs219779	G	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.259;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:92,30:0.25:122
chr21	37833983	rs113831133	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr21	38081562	rs2070647	T	G	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:38,93:0.71:131
chr21	38081577	rs2070648	C	G	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:38,83:0.69:121
chr21	38092039	rs2070650	A	C	63.79	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr21	38113998	rs2070519	C	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr21	38117308	rs2073601	C	A	9597.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,359:1.00:360
chr21	38118089	rs9982519	G	C	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-0.951;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:96,64:0.40:160
chr21	38128707	rs9977769	G	A	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr21	38132172	rs2073420	C	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:104,45:0.30:149
chr21	38139632	rs2073421	C	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr21	38302769	rs2073425	C	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.085;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr21	38302801	rs35066001	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr21	38334256	rs58618927	G	GAAAAAAA	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.560;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.654;QD=9.95;ReadPosRankSum=0.890;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr21	38338651	rs1055699	C	T	265.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38338665	rs1055700	C	G	338.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	38338969	rs9980304	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	38339023	.	G	A	134	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=4;MGOF=20;MMLQ=24;MQ=60.0;NF=2;NR=3;PP=134;QD=33.7542425094;SC=GAAGGGCCGCGCCGCCCCCCC;SbPval=0.33;Source=Platypus;TC=13;TCF=3;TCR=10;TR=5;WE=38339035;WS=38339013;set=Platypus	GT:AD:AF:DP	1/0:8,5:0.38:13
chr21	38339027	rs113500531	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.800;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr21	38437763	rs7337	C	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38444863	rs2507733	C	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	38463868	.	A	ATTAT	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=1.246;QD=20.37;ReadPosRankSum=-0.864;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr21	38495185	rs11440324	G	GT	895.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	38495213	rs11440325	G	GA	1144.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	38495270	rs11440326	A	AT	2108.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	38498585	rs12185849	G	C	184.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38512956	rs1133001	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	38517021	rs1344047	G	A	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	38517058	rs764175	C	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	38520031	rs372841981	AT	A	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.286;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr21	38520091	rs9978203	C	T	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	38522618	rs2257091	G	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	38523266	rs3737540	C	A	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	38525198	rs2051162	G	A	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	38525356	rs1053808	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	38525652	rs767998	T	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	38528866	rs2835635	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	38528872	rs10706050	TG	T	1214.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	38531863	rs4817852	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	38531921	rs1787365	C	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	38532058	rs34771928	TG	T	3209.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	38532068	rs113972351	G	GA	2738.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	38532086	rs34586966	TG	T	3344.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	38532192	rs34367119	A	AT	533.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	38532901	rs5843796	G	GT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	38532904	rs5843798	T	TA	404.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	38532910	rs5843800	A	AG	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	38534228	rs11424055	A	AT	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38534234	rs57522570	C	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38536642	.	ATTT	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.09;ReadPosRankSum=-0.000;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr21	38539673	rs1793885	C	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38539677	rs4988831	A	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	38539681	rs1793886	G	A	274.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	38539718	rs2000413	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	38539745	rs5843802	G	GA	427.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	38539836	rs5843803	T	TA	1914.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	38539844	rs2000415	G	A	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	38540089	rs2000416	T	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	38563725	rs2835655	G	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	38567902	rs2835659	C	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	38567911	rs7280251	T	C	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	38568009	rs1053966	G	C	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr21	38568308	rs6579	C	T	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	38574018	rs1053984	C	T	84.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38599934	rs11300896	TG	T	2066.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	38600154	rs10716173	CG	C	569.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	38792786	rs143066663	TGGG	T	785.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr21	38850640	rs928763	G	A	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	38858938	rs55650427	G	A	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-0.681;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:40,50:0.56:90
chr21	38862862	rs67837743	C	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	38865507	rs2835772	C	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr21	38997701	rs702859	G	A	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr21	39086965	rs2070995	T	C	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	39089242	rs3061015	ACT	A	814.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr21	39089582	rs857961	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	39213020	rs2836016	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr21	39671476	rs2230033	G	A	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:55,96:0.64:151
chr21	39739665	rs2836346	T	A	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	39775373	rs2836373	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	39822650	rs2211871	G	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr21	39822906	rs9305648	G	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,62:0.67:93
chr21	39823349	rs2051165	T	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr21	39870310	rs2836441	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	39947697	rs8129955	A	G	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-1.007;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:54,43:0.44:97
chr21	39947711	rs2836526	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr21	40182177	rs3746882	T	C	97.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr21	40190620	rs10854389	C	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr21	40191389	rs79406319	T	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr21	40191431	rs457705	T	G	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	40191638	rs461155	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	40250361	rs11464500	T	TAAA	875.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.45;ReadPosRankSum=-0.985;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr21	40250762	rs5843936	GA	G	2022.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr21	40250766	rs1569306	G	A	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr21	40547387	rs9305670	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr21	40549289	rs2142111	G	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr21	40549466	rs14194	T	C	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=1.330;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr21	40551887	rs200670808	T	C	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:168,107:0.39:275
chr21	40551943	rs34227163	A	G	4382.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:71,111:0.61:182
chr21	40551944	rs3835285	G	GT	4373.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:71,110:0.61:181
chr21	40552408	rs7280375	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr21	40553845	rs6517522	T	C	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	40555160	rs34294410	C	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:53,90:0.63:143
chr21	40555351	rs13052882	G	C	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:50,101:0.67:151
chr21	40571246	rs1041439	A	G	5967.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr21	40572072	rs2234543	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr21	40574305	rs2183573	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,10:0.23:43
chr21	40582173	rs186745632	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr21	40584598	rs6517529	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	40587003	rs11434832	G	GC	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	40587049	rs4818004	A	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	40590624	rs35571600	A	C	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,59:0.69:85
chr21	40597215	rs139986112	A	AAAG	1998.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	40597236	rs9977787	A	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr21	40600313	rs11702268	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	40619887	rs2836955	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr21	40636354	rs58999088	TAAA	T	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.49;ReadPosRankSum=0.821;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:8,32:0.80:40
chr21	40642189	rs6517532	C	T	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	40642386	rs2836968	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr21	40646226	rs145636658	A	AGC	52.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:59,9:0.13:68
chr21	40646230	rs56135543	CGA	C,AGA	2065.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=86;set=Intersection	GT:AF:DP	1/2:0.62,0.33:78
chr21	40648065	rs149667995	AAC	A	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.582;QD=1.19;ReadPosRankSum=-2.532;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:58,9:0.13:67
chr21	40648265	rs2836969	G	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr21	40649088	rs139067275	TA	T	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=0.168;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr21	40650621	rs973521	G	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.46;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	40652040	rs2836971	A	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.907;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr21	40652142	rs2836972	G	A	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,102:0.68:149
chr21	40684641	rs2272578	C	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	40684861	rs2297258	C	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.31;QD=23.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	40685239	rs34240248	A	G	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.05;MQRankSum=3.125;QD=11.26;ReadPosRankSum=0.528;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr21	40685246	rs34436313	A	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=62.22;MQRankSum=3.784;QD=11.34;ReadPosRankSum=2.441;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr21	40685280	.	G	GGCCCGGGGA	244	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=3;HapScore=2;MGOF=25;MMLQ=24;MQ=61.13;NF=1;NR=2;PP=244;QD=92.6666666667;SC=AGGGGGACGGGGCCAGGGGAG;SbPval=0.54;Source=Platypus;TC=13;TCF=3;TCR=10;TR=3;WE=40685292;WS=40685270;set=Platypus	GT:AD:AF:DP	0/1:10,3:0.23:13
chr21	40685283	.	C	CCGGGG	313.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.510;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.11;MQRankSum=2.610;QD=18.45;ReadPosRankSum=-0.281;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr21	40685284	.	A	G	205	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=4;HapScore=2;MGOF=25;MMLQ=24;MQ=60.97;NF=2;NR=2;PP=205;QD=59.9428031368;SC=GGACGGGGCCAGGGGAGCCGG;SbPval=0.42;Source=Platypus;TC=18;TCF=6;TCR=12;TR=4;WE=40685292;WS=40685270;set=Platypus	GT:AD:AF:DP	0/1:14,4:0.22:18
chr21	40685284	.	A	AGCCG	313.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.916;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.11;MQRankSum=2.610;QD=18.45;ReadPosRankSum=-0.376;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr21	40685515	rs148082602	GCGC	G	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.29;ReadPosRankSum=-1.645;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr21	40686078	rs9981301	G	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.343;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:119,34:0.22:153
chr21	40686327	rs4624474	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.592;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr21	40686382	rs9981349	A	G	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr21	40715132	rs2070867	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	40715167	rs2070866	A	C	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr21	40715175	rs2776308	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=-1.191;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr21	40719241	rs2249666	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	40721611	rs2735313	A	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	40799955	rs2837028	A	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr21	40823981	rs6517549	G	A	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr21	40847249	rs760284	T	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr21	40871810	rs9974333	T	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr21	40880881	rs138818478	CTTGAA	C	1090.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr21	40883671	rs3831201	G	GAGA	839.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr21	40969621	rs661650	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr21	40969826	rs662571	G	C	7356.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr21	40977763	rs73360110	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr21	40977826	rs506382	A	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr21	40978115	rs78905016	C	T	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,65:0.64:102
chr21	41032740	rs3746887	T	C	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr21	41032804	rs734413	G	A	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	41117368	rs403527	G	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	41117533	rs425320	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	41137362	rs9784201	A	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	41137499	rs12626544	A	G	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr21	41137507	rs2205204	G	C	9749.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr21	41159977	rs2837218	G	C	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	41160242	rs456818	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	41165301	rs464574	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	41165462	rs2837225	C	A	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=3.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.798;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:195,73:0.27:268
chr21	41165677	rs463903	G	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	41297873	rs2037920	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:65,39:0.38:104
chr21	41297992	rs2037921	C	T	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.277;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:168,78:0.32:246
chr21	41434671	rs2837408	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr21	41447313	rs378877	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr21	41452034	rs2837424	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr21	41506058	rs403892	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr21	41514421	rs11701139	G	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	41514688	rs35155500	TA	T	657.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	41558937	rs57202091	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr21	41559328	rs59419409	T	C	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:19,4:0.17:23
chr21	41559648	rs56881727	C	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr21	41559972	rs11910008	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr21	41668217	rs3818651	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr21	41725630	rs2297270	G	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr21	41741016	rs2837585	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr21	42080840	rs2205135	G	C	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr21	42539569	rs11316732	AC	A	749.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:82,35:0.30:117
chr21	42622657	rs960231	G	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	42622786	rs1046210	C	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	42688931	rs66482320	C	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr21	42694633	rs2838010	A	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:124,61:0.33:185
chr21	42710175	rs2158354	T	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr21	42717662	rs417708	T	C	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=0.950;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:24,58:0.71:82
chr21	42767733	rs440364	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	42775179	rs112479250	G	GT	3530.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	42775180	rs459763	C	T	3539.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	42775555	rs462161	A	G	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr21	42775742	.	A	G	187.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr21	42808015	rs468207	A	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	42808054	rs468451	C	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	42809206	rs468646	A	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	42812891	rs467960	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	42813933	rs145807679	A	AGTGTGT	788.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	42817582	rs469288	A	G	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	42817612	rs469382	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	42817930	rs469390	G	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	42818106	rs467773	C	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	42818132	rs364199	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	42821113	rs2070229	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr21	42822983	rs1050080	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=-1.379;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr21	42824733	rs469304	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr21	42824874	rs467798	C	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr21	42840580	rs462321	T	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	42842713	rs112132031	C	CCTAAGGCCTCGGG	1399.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	42842771	rs28524972	C	G	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr21	42843960	rs464431	A	G	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	42845383	rs17854725	A	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	42848560	rs140530035	CAG	C	5749.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	42852320	rs734056	C	A	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	42860307	rs422471	C	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	42860485	rs386416	G	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	42879724	rs8126497	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr21	43133198	rs62214243	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr21	43133242	rs58060925	A	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.855;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr21	43161357	rs3746891	T	C	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	43162200	rs3746895	T	C	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr21	43221483	rs3850706	A	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	43221555	rs2236694	G	A	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:45,89:0.66:134
chr21	43221826	rs2236696	T	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	43221983	rs2236697	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr21	43222779	rs2838128	A	G	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	43224683	rs2298687	A	G	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	43231271	rs28610063	A	G	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=1.140;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:75,43:0.36:118
chr21	43236176	rs4075967	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:177,84:0.32:261
chr21	43236252	rs28657504	A	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	43236284	rs4075968	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr21	43239972	rs28477638	A	G	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:118,81:0.41:199
chr21	43240356	rs28360602	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.540;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr21	43242207	rs28360603	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr21	43243585	rs28545527	A	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:70,35:0.33:105
chr21	43246223	rs28559700	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr21	43254463	rs2839388	A	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr21	43255509	rs2839392	C	T	5400.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr21	43255727	rs2839393	T	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr21	43256252	rs4920098	C	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=0.563;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:87,42:0.33:129
chr21	43256438	rs4920101	T	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr21	43258000	rs8127003	T	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr21	43258353	rs6586335	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr21	43267260	rs2277793	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr21	43274653	rs2277794	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr21	43281643	.	G	GC	187	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=9;HapScore=4;MGOF=24;MMLQ=26;MQ=60.0;NF=3;NR=1;PP=187;QD=50.25;SC=TTCCTCCTCTGCCCCCCCCCA;SbPval=0.63;Source=Platypus;TC=9;TCF=7;TCR=2;TR=4;WE=43281659;WS=43281633;set=Platypus	GT:AD:AF:DP	1/0:5,4:0.44:9
chr21	43281651	rs7280316	C	G	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr21	43281668	rs7276603	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.73;ReadPosRankSum=-1.025;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr21	43298715	rs62214725	C	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr21	43298954	rs202107842	C	CG	158.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	43299261	rs112381381	G	A	132.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.28;ReadPosRankSum=-1.221;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr21	43299327	rs185321045	C	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=0.875;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr21	43299354	rs141709929	G	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=0.096;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr21	43309191	rs2839403	A	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	43315057	rs2839411	C	T	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	43325742	rs35279709	CA	C	1613.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	43327856	rs3746906	A	G	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr21	43332605	rs201192263	T	TA	731.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.88;QD=40.65;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	43332608	rs11387062	T	TA	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.88;QD=43.15;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	43332611	rs11387061	T	TA	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=51.78;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	43332623	rs2026283	A	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.46;QD=44.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	43334669	rs3746907	G	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	43334896	rs3746908	A	G	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	43342272	.	CTTT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=12.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-1.161;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr21	43373434	rs202095243	GC	G	1641.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:107,65:0.38:172
chr21	43411548	rs140397626	GCCT	G	1879.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr21	43413731	rs915837	C	T	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:65,108:0.62:173
chr21	43496017	rs220285	C	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr21	43496381	rs220286	G	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr21	43504228	rs7278485	T	C	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.654;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:134,58:0.30:192
chr21	43510427	rs67055914	T	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=1.409;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr21	43510437	rs17114359	A	C	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.827;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr21	43513989	rs34421316	C	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:218,113:0.34:331
chr21	43519032	rs220312	G	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:15,50:0.77:65
chr21	43522349	rs220109	T	C	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:89,162:0.65:251
chr21	43523941	rs220111	C	A	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:74,101:0.58:175
chr21	43529515	rs220120	G	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr21	43529548	rs35742122	A	AG	858.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr21	43530897	rs220125	G	A	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	43531008	rs220126	T	C	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr21	43531403	rs220127	C	G	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	43531553	rs220128	A	C	9582.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr21	43531632	rs220129	T	C	12222.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr21	43531848	rs220131	C	T	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	43539523	rs220147	C	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr21	43541342	rs220150	C	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr21	43541478	.	CGT	C	378.74	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr21	43546705	rs220157	T	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	43547788	rs220158	T	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	43547873	rs220159	G	A	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:21,86:0.80:107
chr21	43548239	rs2839470	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr21	43549794	rs7275646	C	T	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr21	43549808	.	G	GA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.068;QD=0.67;ReadPosRankSum=0.550;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr21	43557736	rs220178	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr21	43697195	rs2234718	A	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr21	43704650	rs2234719	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:99,37:0.27:136
chr21	43711805	rs55934803	T	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr21	43720525	rs1023156	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr21	43720875	rs35803624	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr21	43732425	rs533093	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr21	43766560	rs225334	G	A	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:54,83:0.61:137
chr21	43767500	rs225337	T	A	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr21	43770926	rs5844113	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.59;ReadPosRankSum=1.785;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr21	43786512	rs225358	C	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr21	43824106	rs2277798	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:45,16:0.26:61
chr21	43826381	rs112426930	C	T	3223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-0.431;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:146,97:0.40:243
chr21	43826391	rs3746924	T	C	2922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=0.430;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:130,78:0.38:208
chr21	43829758	rs11702374	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr21	43836781	rs113577025	C	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr21	43838469	rs112141973	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:79,37:0.32:116
chr21	43855067	rs1893592	A	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr21	43862466	rs2254368	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr21	43863521	rs868092	A	G	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	43864519	rs4920104	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr21	43867059	rs3827232	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr21	43892775	rs11203205	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr21	43897549	rs149478284	T	C	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.298;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:80,28:0.26:108
chr21	43955427	rs228056	A	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr21	43955735	rs112341452	G	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr21	43959770	rs228063	A	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr21	43963759	rs228075	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr21	43984126	rs7282730	C	T	500.94	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr21	43985012	rs113988265	G	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.008;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr21	43985016	rs915874	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	43985955	rs228104	G	A	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr21	43986117	rs36113965	T	TC	4458.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr21	43986175	rs4919992	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr21	43987325	rs9977293	C	T	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.19;ReadPosRankSum=-0.892;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,22:0.61:36
chr21	43987326	rs113853144	C	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.515;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr21	43987329	rs9979646	G	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	43988437	rs7280392	G	A	2652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=1.307;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:56,122:0.69:178
chr21	43995178	rs143404028	T	TTC	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr21	43999983	rs453592	T	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	44000052	rs380152	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	44000063	rs380161	T	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr21	44000078	rs453647	T	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr21	44000366	rs388907	A	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	44107960	rs2839573	T	A	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=0.052;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:23,44:0.66:67
chr21	44107989	rs2839574	A	G	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=-2.030;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:35,77:0.69:112
chr21	44118958	rs1515755	T	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.44;ReadPosRankSum=-0.350;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr21	44152149	rs2269153	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr21	44163839	rs6586344	A	G	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	44173971	rs57957426	CA	C	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.834;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr21	44174275	rs4919999	T	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.38;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	44180443	rs13047953	C	T	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:211,107:0.34:318
chr21	44180866	rs55905735	ACC	A,AC	861.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.92;SOR=1.302;set=HC	GT:AD:AF:DP	1/2:0,16,11:0.59,0.41:27
chr21	44182135	rs2269168	C	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr21	44185794	rs2284970	TC	GA	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr21	44188249	rs68104891	GC	G	981.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr21	44188485	rs2284977	T	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,44:0.80:55
chr21	44188504	rs67260236	C	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr21	44189166	rs1045382	T	C	2605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=-0.475;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:41,64:0.61:105
chr21	44189172	rs3087994	A	C	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=-1.087;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:41,69:0.63:110
chr21	44189387	rs55990449	G	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr21	44190680	rs2269172	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr21	44195374	rs9637296	G	A	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr21	44270229	rs6586250	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr21	44270402	rs6586251	C	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr21	44272327	rs8133179	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr21	44273858	rs15736	G	A	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:62,141:0.69:203
chr21	44274807	rs62215010	A	G	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.698;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:103,56:0.35:159
chr21	44274845	rs1107831	A	G	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:48,84:0.64:132
chr21	44275979	rs465663	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr21	44279848	rs7278765	A	G	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-0.814;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:32,44:0.58:76
chr21	44282337	rs144064922	AC	A	816.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr21	44293744	rs2248490	C	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr21	44296934	rs7279447	T	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.005;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=1.503;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:17,32:0.65:49
chr21	44313498	rs141846205	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.32;ReadPosRankSum=0.696;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr21	44317003	rs9974287	T	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr21	44317156	rs141922962	A	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-2.568;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr21	44323590	rs4148973	T	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr21	44324365	rs10595	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr21	44327015	rs2839604	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr21	44328830	rs4148976	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.881;QD=11.39;ReadPosRankSum=-0.823;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr21	44339038	rs62220807	T	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.926;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr21	44371010	rs73367656	C	T	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-0.866;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:98,57:0.37:155
chr21	44371114	rs451887	T	C	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	44424689	rs3216136	G	GA	1119.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	44430325	rs234781	T	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	44445185	rs234719	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	44448763	rs170916	G	C	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	44448775	rs234728	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	44449095	rs234729	G	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	44449917	rs234733	G	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	44452424	rs141407897	T	TTCCCTCACCACCCTCCGTCTCTTCG	428.74	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=42.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	44452455	rs378528	T	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	44475877	rs8132811	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:31,60:0.66:91
chr21	44475953	rs760124	T	C	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.061;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:107,48:0.31:155
chr21	44476000	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-1.634;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:105,19:0.15:124
chr21	44476759	rs234701	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	44483279	rs150181241	C	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:68,30:0.31:98
chr21	44485350	rs234706	G	A	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	44486271	rs234707	G	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	44486324	rs234708	T	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	44487891	rs234713	G	A	8487.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr21	44488033	rs234714	T	C	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	44488755	rs5844149	G	GA	55.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.30;ReadPosRankSum=0.210;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr21	44515685	rs2839634	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr21	44527669	rs17115876	T	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:161,60:0.27:221
chr21	44579848	rs56218428	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr21	44580019	rs143864709	AACACACACC	A	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr21	44589215	rs872331	C	T	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:116,43:0.27:159
chr21	44590059	rs870137	C	T	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr21	44837359	rs2838300	G	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	44837555	rs430554	G	A	6572.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr21	44838081	rs2838301	A	G	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	44838466	rs117381526	T	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr21	44839153	rs2838302	A	G	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	44839654	rs229346	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	44840382	rs657978	G	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	44840386	rs117253106	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	44840835	rs73380301	A	G	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	44840873	rs75559179	G	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-1.181;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr21	44841036	rs2006191	A	G	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	44841052	rs2006112	T	C	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	44841365	rs58732746	A	G	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	44841462	.	A	G	860	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=4;HapScore=1;MGOF=11;MMLQ=24;MQ=57.17;NF=31;NR=7;PP=860;QD=23.5466108565;SC=CTCCCACCCCAGACCCTCCGT;SbPval=0.55;Source=Platypus;TC=38;TCF=31;TCR=7;TR=38;WE=44841470;WS=44841460;set=Platypus	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	44841804	rs56265008	G	A	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr21	44841819	rs57684950	G	C	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	44841945	rs59151119	C	T	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr21	44845888	rs56796001	A	G	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr21	44985202	rs9637217	G	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.53;QD=31.61;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	44985272	rs9637218	C	T	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.50;QD=29.33;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	45053011	rs7277539	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	45064296	rs2246602	C	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	45076373	rs2838340	A	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr21	45076443	rs2838341	A	G	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	45077865	rs2838342	G	A	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	45078035	rs2838343	C	T	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	45078050	rs145641106	G	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:99,50:0.34:149
chr21	45089877	rs2838344	G	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	45092095	rs11909064	G	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	45092257	rs2251253	T	A	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr21	45094642	rs147057584	GT	G	752.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:69,37:0.35:106
chr21	45096206	rs2155722	G	A	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr21	45107285	rs2838348	C	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	45107518	rs7279959	A	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr21	45107562	rs9306160	T	C	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	45111512	.	A	AT	223	.	AC=2;AF=1.00;AN=2;BRF=0.04;FR=1.0000;HP=8;HapScore=2;MGOF=14;MMLQ=28;MQ=57.82;NF=1;NR=4;PP=223;QD=49.0;SC=CCATTTCTTTATTTTTATTTT;SbPval=0.33;Source=Platypus;TC=13;TCF=1;TCR=12;TR=5;WE=45111520;WS=45111502;set=Platypus	GT:AD:AF:DP	1/1:8,5:0.38:13
chr21	45170285	rs1106797	A	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:96,35:0.27:131
chr21	45170580	rs1079268	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-1.217;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr21	45172379	rs8134507	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:65,39:0.38:104
chr21	45175571	rs8128639	C	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:96,58:0.38:154
chr21	45220787	rs2329576	A	G	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	45388079	rs11324107	CG	C	684.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	45389261	rs73906692	A	G	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	45390737	rs78512431	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	45390749	rs10669784	T	TA	98	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr21	45391139	rs3737358	G	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	45397766	.	C	CA	155.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-0.760;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr21	45400781	rs17004619	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	45404846	rs73373146	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	45404974	rs11911398	C	A	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	45405278	.	T	TAA	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.57;ReadPosRankSum=-0.143;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr21	45500059	rs182329148	A	C	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:36,54:0.60:90
chr21	45514141	rs11287102	TG	T	756.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	45514149	rs9941801	A	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	45514168	rs4819371	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	45514188	rs4818879	A	G	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	45527112	rs72257518	GCTC	G	566.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	45527291	rs11550376	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr21	45527460	rs2850153	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	45528919	rs2020945	G	A	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	45534032	rs2243999	C	T	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	45535060	rs118172819	G	A	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr21	45538512	rs5844173	TG	T	1526.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	45538647	rs756553	T	C	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr21	45538725	rs756554	C	A	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr21	45538782	rs756555	A	T	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr21	45539240	rs2855652	G	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	45539426	rs2071142	G	A	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	45540143	rs2855653	G	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	45540207	rs2850157	C	T	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	45540919	rs2071143	A	G	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr21	45544594	rs2187313	T	C	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	45547736	rs368215943	T	TAA	648.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	45550460	rs11311220	TC	T	444.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	45553430	rs2187314	A	C	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr21	45553476	rs968713	A	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr21	45553596	rs968714	T	C	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr21	45560145	rs17264865	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:66,26:0.28:92
chr21	45560331	rs2838492	C	G	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	45561039	rs1059813	T	C	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr21	45564575	rs2838496	G	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	45565473	rs7676	C	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	45642817	rs35694117	TA	T	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.779;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.012;QD=10.56;ReadPosRankSum=0.820;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr21	45643008	rs1048710	A	G	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-0.151;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr21	45648880	rs55769116	C	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr21	45648992	rs7278940	T	C	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=1.442;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:64,36:0.36:100
chr21	45649494	.	A	G	195	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5104;HP=4;HapScore=2;MGOF=11;MMLQ=23;MQ=58.68;NF=7;NR=5;PP=195;QD=19.1476010456;SC=GCCCGGACCCACTCCGGACAC;SbPval=0.44;Source=Platypus;TC=14;TCF=9;TCR=5;TR=12;WE=45649502;WS=45649484;set=Platypus	GT:AD:AF:DP	0/1:2,12:0.86:14
chr21	45649640	rs7280853	C	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr21	45649778	rs4568033	A	G	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:121,59:0.33:180
chr21	45649848	rs13052840	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:112,50:0.31:162
chr21	45650008	.	A	AC	379	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=4;MGOF=10;MMLQ=23;MQ=60.0;NF=1;NR=7;PP=379;QD=52.75;SC=GGCAGCAGCGATGGGGGGTGT;SbPval=0.53;Source=Platypus;TC=33;TCF=3;TCR=30;TR=8;WE=45650017;WS=45649998;set=Platypus	GT:AD:AF:DP	1/0:25,8:0.24:33
chr21	45650009	rs2236668	T	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.503;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.669;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr21	45651413	rs3746962	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	45660835	rs2847224	C	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr21	45670770	rs7354779	T	C	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.075;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr21	45681153	rs2070565	T	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr21	45708277	rs878081	C	T	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:74,134:0.64:208
chr21	45710107	rs1003854	T	C	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr21	45712290	rs1800525	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr21	45712357	rs5844181	AC	A	484.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	45712977	rs1800521	T	C	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=1.247;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:49,43:0.47:92
chr21	45717550	rs1133779	T	C	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr21	45724055	rs8134520	G	A	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-2.011;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr21	45725055	rs55730776	CA	TG	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.386;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=0.782;SOR=2.110;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr21	45725064	rs34642010	C	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.436;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr21	45725715	rs9975113	A	G	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr21	45725746	rs118169148	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:42,62:0.60:104
chr21	45725857	rs9977591	TC	CT	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.493;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.591;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr21	45725910	rs67861360	C	T	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr21	45726480	rs2070568	T	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=1.717;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr21	45726499	.	T	TGGG	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=4.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=1.273;SOR=1.567;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr21	45726504	rs55966702	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=1.597;SOR=1.354;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr21	45726694	rs2070569	CC	GT	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.985;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.901;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr21	45726790	rs2070571	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr21	45732116	rs1057034	C	T	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,57:0.53:108
chr21	45741854	rs4818904	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr21	45742115	rs2277808	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr21	45742822	rs11088947	T	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr21	45743594	rs12482028	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr21	45746214	rs4818905	A	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr21	45746225	rs4818906	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr21	45750145	rs11552066	T	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:71,54:0.43:125
chr21	45750248	rs11552067	G	A	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:122,97:0.44:219
chr21	45755736	rs147855042	C	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:93,90:0.49:183
chr21	45757631	rs56242109	G	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr21	45758909	.	T	G	206	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=5;HapScore=2;MGOF=16;MMLQ=20;MQ=57.07;NF=13;NR=2;PP=206;QD=16.0514141698;SC=CTCCGCCCTCTCCCCGCCCCG;SbPval=0.77;Source=Platypus;TC=22;TCF=18;TCR=4;TR=15;WE=45758917;WS=45758899;set=Platypus	GT:AD:AF:DP	1/0:7,15:0.68:22
chr21	45759045	rs11870	C	T	3137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.628;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:124,153:0.55:277
chr21	45759197	rs73374031	G	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr21	45784271	rs2276252	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.163;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr21	45789011	rs34543751	A	AG	1609.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	45799164	rs2838556	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr21	45811343	rs1556314	T	G	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:130,113:0.47:243
chr21	45815573	rs67099101	AG	A	274.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=0.711;QD=8.86;ReadPosRankSum=-0.589;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr21	45815575	rs150668005	G	A	283.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.040;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=0.727;QD=9.46;ReadPosRankSum=-0.478;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr21	45815580	.	TG	T	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=0.693;QD=10.38;ReadPosRankSum=0.212;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr21	45815583	.	AGGATGTGG	A	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=0.793;QD=9.09;ReadPosRankSum=-0.532;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr21	45817620	rs1785436	T	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:68,67:0.50:135
chr21	45821794	rs1785437	C	T	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,97:0.53:184
chr21	45825975	rs1614122	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr21	45826434	rs1785454	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr21	45826462	rs1618355	C	A	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.109;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr21	45826744	rs1785439	A	G	55.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.95;ReadPosRankSum=-0.319;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr21	45834025	rs915779	T	C	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr21	45837790	rs1785452	T	C	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:114,110:0.49:224
chr21	45843707	rs35058894	TGAG	T	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr21	45844601	rs13050999	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=1.300;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr21	45844751	rs9978351	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	45844870	.	T	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.288;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr21	45845807	rs762428	C	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	45846544	rs144380426	C	T	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:86,92:0.52:178
chr21	45854925	rs41277556	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr21	45942111	rs233230	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	45948629	rs149976186	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr21	45959195	rs233316	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr21	45959312	rs233317	C	T	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	45959386	rs233318	G	A	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:163,70:0.30:233
chr21	45959556	.	A	ATG	3809.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DP=312;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.260;QD=12.33;ReadPosRankSum=-0.402;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:203,106:0.34:309
chr21	45959557	.	ATC	TGA	2934	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=21;MQ=59.96;NF=41;NR=48;PP=2934;QD=20;SC=ATGAAGAGGAATCCTCAGAGC;SbPval=0.36;Source=Platypus;TC=290;TCF=145;TCR=145;TR=89;WE=45959567;WS=45959547;set=Platypus	GT:AD:AF:DP	0/1:201,89:0.31:290
chr21	45959557	.	ATC	A	3803.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DP=312;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.245;QD=12.23;ReadPosRankSum=-0.070;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:206,105:0.34:311
chr21	45959918	rs233320	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.353;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr21	45970812	rs2329834	G	A	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr21	45971109	rs200984587	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.509;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=4.501;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-8.333;QD=0.56;ReadPosRankSum=1.256;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:123,22:0.15:145
chr21	45971152	rs199607801	G	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.533;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-8.848;QD=5.73;ReadPosRankSum=2.285;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:83,22:0.21:105
chr21	45971162	rs199922020	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-8.744;QD=6.27;ReadPosRankSum=1.786;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr21	45971380	rs6147532	A	AGTGAGTGAGTGT	1503.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	45978488	rs12483390	G	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:58,21:0.27:79
chr21	45978499	rs377549	T	G	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	45978503	rs435424	G	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	45978677	rs62220866	C	T	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr21	46011149	rs62220886	T	C	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr21	46011170	rs233302	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr21	46011468	rs465279	G	A	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:68,146:0.68:214
chr21	46011496	rs201123949	C	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:166,69:0.29:235
chr21	46012240	rs543542	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.46;QD=26.32;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	46020473	rs113686885	C	CTCAT	5041.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	46020527	rs1211103	C	T	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr21	46020655	rs36208679	CCTGCTGCGCCCCCAG	C	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=6.245;MLEAC=1;MLEAF=0.500;MQ=50.46;MQRankSum=2.094;QD=14.06;ReadPosRankSum=-2.100;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr21	46021088	rs388827	C	T	2594.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=16.071;MLEAC=2;MLEAF=1.000;MQ=43.74;MQRankSum=1.277;QD=28.51;ReadPosRankSum=0.158;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:4,87:0.96:91
chr21	46021179	rs363877	C	A	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr21	46021205	rs389167	C	T	6479.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.333;MLEAC=2;MLEAF=1.000;MQ=59.04;MQRankSum=-0.506;QD=24.83;ReadPosRankSum=1.104;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:3,258:0.99:261
chr21	46021370	rs437149	T	C	15348.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr21	46021390	rs446817	G	C	14686.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr21	46021481	rs437334	T	C	12146.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr21	46021494	rs369720	A	G	12039.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr21	46021607	rs370092	A	G	10217.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr21	46021759	rs659638	A	G	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	46032094	rs411254	A	G	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr21	46047418	rs8126553	C	T	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr21	46047633	rs8127342	A	G	13630.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:1,488:1.00:489
chr21	46047710	rs8131142	T	C	10915.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr21	46047857	rs9980129	C	T	12311.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr21	46047925	rs9979457	G	T	9471.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr21	46047971	rs463217	T	C	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr21	46048053	rs59484649	G	C	2090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.15;MQRankSum=-1.266;QD=26.47;ReadPosRankSum=1.546;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:24,55:0.70:79
chr21	46048060	rs57944973	A	G	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.84;MQRankSum=-1.093;QD=29.18;ReadPosRankSum=2.108;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr21	46057391	rs9306108	A	G	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.280;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-1.891;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:65,34:0.34:99
chr21	46057391	.	AGT	GGA	378	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=1;MGOF=17;MMLQ=24;MQ=59.81;NF=14;NR=13;PP=378;QD=15.9802916616;SC=CTTGGCGGGTAGTCGACTGCC;SbPval=0.37;Source=Platypus;TC=87;TCF=50;TCR=37;TR=27;WE=46057401;WS=46057381;set=Platypus	GT:AD:AF:DP	0/1:60,27:0.31:87
chr21	46057393	rs2838602	T	A	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	46057417	rs114653592	AG	CC	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.192;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=12.11;ReadPosRankSum=0.275;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:61,32:0.34:93
chr21	46057422	rs112205018	T	A	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=11.98;ReadPosRankSum=1.126;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:63,31:0.33:94
chr21	46057548	rs4818947	A	C	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	46057612	rs66931310	CCTGCTGTGTGCCTGT	C	7810.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:22,178:0.89:200
chr21	46057711	rs4818948	G	C	2268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.373;QD=9.30;ReadPosRankSum=1.343;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:174,70:0.29:244
chr21	46057720	rs4818949	A	C	2341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.377;QD=9.11;ReadPosRankSum=0.879;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:182,75:0.29:257
chr21	46057806	rs4818950	G	A	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr21	46057958	rs4818951	C	T	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr21	46058060	rs13051517	C	T	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr21	46058229	rs1785474	A	T	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	46066764	rs4818952	C	T	8028.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr21	46067180	rs462007	C	T	8254.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:1,306:1.00:307
chr21	46074104	rs2073437	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	46074202	rs9984726	A	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	46074565	rs12482041	C	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr21	46077812	rs2838617	A	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr21	46077946	rs9306111	A	G	9192.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,344:1.00:345
chr21	46078220	rs9306112	T	C	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	46086377	rs2838622	A	G	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr21	46086407	rs12481809	C	T	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=1.216;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:113,44:0.28:157
chr21	46086457	rs12483730	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.056;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:217,81:0.27:298
chr21	46086718	rs7275281	GA	CG	8841.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;JOINED;set=Intersection	GT:AD:AF:DP	0/1:114,222:0.66:336
chr21	46086757	rs7275298	GC	AT	8025.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr21	46086827	rs55914221	C	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr21	46101939	rs9984476	C	T	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=2.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.222;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:365,126:0.26:491
chr21	46102015	rs7283084	C	T	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.676;QD=3.03;ReadPosRankSum=0.373;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:190,53:0.22:243
chr21	46191270	rs11569	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	46207886	rs74778563	G	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	46271452	rs235314	C	T	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	46271460	rs2236442	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	46271660	rs235315	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	46276343	rs35432315	C	T	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	46281314	rs235276	T	C	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	46281948	rs73238097	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	46285416	rs67786546	T	C	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	46293692	rs235373	T	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	46308800	rs2230531	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.068;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr21	46311813	rs235326	A	G	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	46313442	rs2230529	G	T	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	46314907	rs235330	T	A	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr21	46315022	rs2838725	C	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	46315091	rs2838726	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	46320403	rs5030670	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	46328099	rs760462	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	46330674	rs11088969	C	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr21	46354055	rs9974172	A	G	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	46355531	rs11088970	A	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:44,68:0.61:112
chr21	46355710	rs11088971	A	G	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr21	46355833	rs11701737	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr21	46357359	rs4818990	G	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.17;ReadPosRankSum=0.691;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr21	46357365	rs4818991	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.487;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.46;ReadPosRankSum=0.946;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr21	46360076	rs4818742	C	T	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.261;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr21	46363607	rs78520285	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.983;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.317;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr21	46387078	rs2294168	G	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr21	46387106	rs77534538	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr21	46389017	rs12106383	C	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr21	46393090	rs3827260	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr21	46396659	rs3737075	G	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr21	46554604	rs11369444	A	AT	823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=-0.531;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:62,63:0.50:125
chr21	46572572	rs420085	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	46602483	.	C	CT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.361;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr21	46825006	.	CCCCCTGCCCGGCCCCTGCCCGG	C	134	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=33.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	46825202	.	G	GCTGCGGGGCTGCGGGGGTCCCGGGGGTCCCGGGGGTCGGCTGGGTCCTGCGGGGGTC	498.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.49;QD=62.34;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	46875564	rs914230	T	C	11004.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr21	46914642	rs9977637	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr21	46924425	rs149296338	CGGCCCCCCA	C	1042.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;MQRankSum=0.545;QD=26.74;ReadPosRankSum=1.625;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr21	46926002	rs10483080	C	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr21	46927489	rs12483761	A	G	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=-0.442;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:16,45:0.74:61
chr21	46929553	rs78487064	C	G	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-0.461;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:38,64:0.63:102
chr21	46930865	.	AACACCCCACATACACCCCCAAACACCCCCCACACCC	A	187.87	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	46930909	.	ACAACACACCCCCCC	A	295.80	.	AC=1;AF=0.500;ALERT;AN=2;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=36.97;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr21	46930924	.	C	T	304.84	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=38.10;ReadPosRankSum=0.489;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr21	46930929	.	ACATCC	A	333.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=37.10;ReadPosRankSum=-0.000;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr21	46930948	rs116087241	A	C	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=7.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.11;ReadPosRankSum=1.508;SOR=3.160;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr21	46930959	rs147164507	CA	C	809.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=7.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=1.134;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr21	46931004	rs148407279	T	TAC	2899.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:34,80:0.70:114
chr21	46931109	rs12483377	G	A	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.151;QD=13.70;ReadPosRankSum=-1.342;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:35,55:0.61:90
chr21	46945969	rs2039276	G	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr21	46951556	rs12659	A	G	5940.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr21	46952094	rs914231	T	C	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	46954343	rs2330184	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	46957794	rs1051266	T	C	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	46957916	rs1131596	G	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	46957982	rs13052294	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	47329352	rs2277812	T	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:95,46:0.33:141
chr21	47350587	rs407651	C	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	47401760	rs7671	C	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr21	47404397	rs3746993	A	G	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	47406421	rs741956	G	A	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:76,116:0.60:192
chr21	47406612	rs754507	C	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	47407362	rs62215498	C	T	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:222,130:0.37:352
chr21	47409113	rs8129814	C	T	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	47409503	rs2277814	A	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	47409580	rs34495634	C	A	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=0.452;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:60,96:0.62:156
chr21	47410378	.	GAATGGGGC	G	1321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=2.056;QD=29.37;ReadPosRankSum=0.159;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,36:0.80:45
chr21	47410388	.	AGATGGGGAGGGACGGAGTGGACGGCGTGAAGGTGACC	A	1270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.208;QD=22.29;ReadPosRankSum=0.046;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:24,33:0.58:57
chr21	47410626	rs1980981	T	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47410931	rs1980982	T	C	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:56,105:0.65:161
chr21	47412751	rs2850173	A	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	47417147	rs148786363	CCAGGCCCTTCGTG	C	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr21	47417206	rs11701583	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr21	47417303	rs2839077	T	C	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	47417415	rs2276254	C	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr21	47417432	rs3216137	A	AG	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	47417578	rs2276255	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr21	47417695	.	G	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.451;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr21	47417975	rs3737437	A	G	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	47418234	rs11700844	G	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr21	47418728	rs141212516	C	CT	1355.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	47419012	rs4819179	C	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr21	47419697	rs8131101	C	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.21;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	47419706	rs11464071	C	CG	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=11.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.056;SOR=2.882;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr21	47419747	rs8131632	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	47419770	rs73908116	G	A	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	47419780	rs8130255	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	47419794	rs8126900	T	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	47419804	rs8131227	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	47420418	rs4818812	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr21	47420565	rs142824931	AGGAGGGCGGCCGGGGAG	A	3444.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	47420723	rs13053065	G	C	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=-0.386;QD=15.91;ReadPosRankSum=0.639;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:33,92:0.74:125
chr21	47420726	rs7276098	C	G	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=39.62;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	47420761	rs7283989	G	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.045;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr21	47420769	rs7276782	A	G	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	47421315	rs11701124	C	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=4.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.276;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:117,44:0.27:161
chr21	47421793	rs8132377	C	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-0.232;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:44,21:0.32:65
chr21	47421797	rs8131313	G	A	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.369;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr21	47421864	rs8132521	C	T	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.028;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:87,44:0.34:131
chr21	47422412	rs35796750	C	T	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:243,129:0.35:372
chr21	47422639	rs2236485	A	G	3011.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.240;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.02;ReadPosRankSum=-1.399;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:2,84:0.98:86
chr21	47422639	.	ACCCGG	GCCCGA,GCCCGG	741	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=5;HapScore=2;MGOF=11;MMLQ=23;MQ=60.0;NF=7,16;NR=21,57;PP=431,741;QD=17.3024241022;SC=GCATGGGGCCACCCGGGCAGT;SbPval=0.46;Source=Platypus;TC=75;TCF=17;TCR=58;TR=28,73;WE=47422652;WS=47422629;set=Platypus	GT:AF:DP	0/1:0.37:75
chr21	47422644	rs2236486	G	A	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=-0.792;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:45,33:0.42:78
chr21	47422679	rs2236487	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr21	47422712	rs2236488	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr21	47423133	rs2236489	C	G	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	47423233	rs59769541	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr21	47423389	rs1053312	G	A	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:54,142:0.72:196
chr21	47423507	rs1053315	G	A	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,113:0.67:169
chr21	47423636	rs1053320	C	T	3582.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:77,158:0.67:235
chr21	47532544	rs1010688	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr21	47532553	rs112472569	A	G	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:49,82:0.63:131
chr21	47536546	rs762438	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr21	47536840	rs59060956	TAC	T	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.000;QD=24.25;ReadPosRankSum=1.242;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr21	47537666	rs5844252	T	TG	364.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	47537882	rs7279347	G	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.272;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr21	47538050	rs7279535	G	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	47538691	rs9917540	G	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr21	47538960	rs2839110	G	A	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr21	47539790	rs3737362	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	47540421	rs73159701	T	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-1.319;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr21	47540573	rs743503	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr21	47540842	rs55964853	G	C	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr21	47541302	rs1076850	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr21	47541553	rs1077182	A	G	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:21,77:0.79:98
chr21	47541986	rs9976026	T	C	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.151;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-0.692;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:25,52:0.68:77
chr21	47542052	rs141166141	C	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,68:0.65:104
chr21	47542220	rs2070578	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr21	47542634	rs17272671	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr21	47542654	rs5844253	G	GC	1584.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	47542779	rs17357592	C	T	2035.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.21;ReadPosRankSum=1.098;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:10,86:0.90:96
chr21	47542861	rs915786	A	G	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	47544451	rs36033678	GC	G	199.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	47544541	rs3746995	C	G	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-1.120;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr21	47545155	rs2839113	A	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	47545369	rs149954350	A	AC	4210.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:98,166:0.63:264
chr21	47545676	rs78764604	G	C	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:22,90:0.80:112
chr21	47545768	rs1042917	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:156,77:0.33:233
chr21	47545823	rs13052956	G	A	3539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-0.823;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:184,99:0.35:283
chr21	47545826	rs13046639	C	T	3536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.674;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:190,98:0.34:288
chr21	47545913	rs2839114	G	A	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:198,90:0.31:288
chr21	47546244	rs13050660	T	C	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=1.767;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr21	47546326	.	C	A	1078.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr21	47549390	rs143713613	G	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:17,55:0.76:72
chr21	47549510	rs7717	G	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr21	47551833	rs7279622	C	T	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47552209	rs35548026	G	A	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:83,136:0.62:219
chr21	47552527	rs1043801	G	A	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:38,89:0.70:127
chr21	47556793	rs12774	C	T	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.936;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:76,25:0.25:101
chr21	47557074	rs9284510	A	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr21	47558473	rs1047179	G	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-3.814;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr21	47571383	rs34248722	C	CA	1459.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	47581655	rs3827274	C	T	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr21	47608580	rs2968	G	A	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.184;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:110,40:0.27:150
chr21	47609510	rs9717	T	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	47609677	rs914247	A	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	47612466	rs2187120	A	G	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-1.100;QD=9.07;ReadPosRankSum=-0.948;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:57,24:0.30:81
chr21	47612471	rs2187121	T	C	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.078;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-1.210;QD=9.18;ReadPosRankSum=-0.708;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr21	47612512	rs146297977	C	CTG	3558.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	47614469	rs2254524	A	C	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	47616071	rs7282841	G	C	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.60;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	47616071	.	GTGGATCCCG	CTGGATCCCA,CTGGATCCCG	609	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=9,33;NR=3,9;PP=70,609;QD=10.2889895719;SC=GCAGAAACCTGTGGATCCCGT;SbPval=0.49;Source=Platypus;TC=42;TCF=33;TCR=9;TR=12,42;WE=47616088;WS=47616061;set=Platypus	GT:AF:DP	0/1:0.29:42
chr21	47616080	rs2839140	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=2.007;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr21	47628375	rs73144751	G	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr21	47633789	rs9974665	C	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:137,68:0.33:205
chr21	47635302	rs5844259	T	TC	399.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	47635627	rs9980968	C	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=1.079;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr21	47635713	rs11701729	G	A	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-3.110;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:64,40:0.38:104
chr21	47635856	rs2839153	C	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	47639492	rs2277826	C	G	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr21	47639548	rs74328331	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:23,64:0.74:87
chr21	47641700	rs2839157	G	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	47641996	rs2280959	C	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr21	47642016	rs2280958	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr21	47647439	rs76428496	C	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr21	47647618	rs10550493	GAA	G	1762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=1.596;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:43,72:0.63:115
chr21	47648729	.	CCCCGCCCCT	C	515.73	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr21	47656712	rs2839166	T	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=0.064;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr21	47656732	rs17183368	G	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr21	47662899	rs56371413	CA	C	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=1.519;QD=8.57;ReadPosRankSum=-1.282;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr21	47662920	rs60691594	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.496;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr21	47666332	rs2839169	A	G	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:40,108:0.73:148
chr21	47666744	rs17183220	G	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:45,92:0.67:137
chr21	47669648	rs2330353	T	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr21	47671690	rs2839984	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr21	47674275	rs2250213	G	A	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:64,129:0.67:193
chr21	47678774	rs2839178	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	47681127	rs2839180	T	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	47685787	rs9637172	T	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:63,121:0.66:184
chr21	47685939	rs2839181	A	G	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:44,87:0.66:131
chr21	47686152	rs2839182	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	47686174	rs4818831	T	C	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47687144	rs2839183	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.358;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr21	47692531	rs17182739	T	C	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:34,91:0.73:125
chr21	47692798	rs2839188	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr21	47695395	rs2839191	C	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr21	47697650	rs17182664	A	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-0.500;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr21	47700666	rs75145622	C	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr21	47703455	.	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=3.123;QD=1.01;ReadPosRankSum=-1.650;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr21	47703649	rs11702450	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr21	47704896	rs9975588	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:58,20:0.26:78
chr21	47705237	rs17176131	T	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr21	47707039	rs71318058	T	TAAAAA	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-0.980;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr21	47707050	rs61182475	T	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.328;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-1.630;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr21	47711229	rs2276257	A	G	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=-1.703;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chr21	47716230	rs1888539	T	C	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	47717350	rs2839206	C	G	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	47717493	rs61736728	G	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr21	47717616	rs8651	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	47717686	rs2839207	G	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.21;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	47722391	rs1556337	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	47722578	rs1974171	G	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47735137	rs79241392	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr21	47744037	rs3842460	CG	C	437.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	47744127	rs138595914	G	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-0.688;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr21	47744202	rs80017051	C	T	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=0.583;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:16,29:0.64:45
chr21	47766113	rs34500739	T	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr21	47766139	rs9982233	T	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	47766650	rs2839217	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.939;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr21	47767482	rs79850630	C	T	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,65:0.77:84
chr21	47773103	rs2249057	C	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:78,40:0.34:118
chr21	47774039	rs117007201	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr21	47776845	rs17297961	G	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr21	47777063	rs2839223	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	47777222	rs2839224	A	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	47783796	rs8131546	T	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	47786449	rs9637173	T	A,G	1805.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=73;set=Intersection	GT:AF:DP	1/2:0.31,0.69:71
chr21	47786494	rs2839226	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:79,36:0.31:115
chr21	47786817	rs2839228	C	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	47787002	rs6518289	T	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	47805663	rs2073378	C	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr21	47810480	rs141693899	T	TGAC	304.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr21	47811272	rs3737438	C	T	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr21	47817563	rs79407815	G	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr21	47821588	rs6518291	A	G	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr21	47831309	rs58559714	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr21	47831509	rs35940413	A	G	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=0.465;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:30,76:0.72:106
chr21	47831618	rs16979162	C	T	6547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.31;ReadPosRankSum=0.134;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:55,161:0.75:216
chr21	47831621	rs61735811	C	T	6518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.32;ReadPosRankSum=0.032;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:54,161:0.75:215
chr21	47831845	rs34268261	G	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr21	47832019	rs73907502	T	C	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.33;ReadPosRankSum=0.401;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr21	47832029	rs73379348	T	G	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.94;ReadPosRankSum=0.870;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr21	47832040	rs73909504	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr21	47832955	rs112334245	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr21	47835880	rs3058055	C	CCT	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr21	47836122	rs2839245	T	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr21	47836206	rs35978208	A	C	2589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.76;ReadPosRankSum=-1.161;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:51,68:0.57:119
chr21	47836216	rs60444527	A	G	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.79;ReadPosRankSum=-1.906;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:48,67:0.58:115
chr21	47836395	rs1044998	T	G	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:62,122:0.66:184
chr21	47836547	rs35346764	T	C	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr21	47836653	rs2070425	C	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-0.641;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr21	47838112	rs140307278	T	TATCTG	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr21	47838123	rs2839246	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr21	47838421	rs60124276	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr21	47841791	rs111962882	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr21	47841933	rs61735815	T	C	3135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.80;ReadPosRankSum=1.159;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:43,74:0.63:117
chr21	47841941	rs7277175	A	G	3256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.77;ReadPosRankSum=0.905;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:47,90:0.66:137
chr21	47841989	rs61735814	C	T	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,81:0.65:125
chr21	47845662	rs78995522	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.85;ReadPosRankSum=2.100;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr21	47845936	rs2330435	T	C	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-1.083;QD=19.61;ReadPosRankSum=0.572;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:29,36:0.55:65
chr21	47845942	rs2330436	T	C	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-1.100;QD=22.47;ReadPosRankSum=0.423;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:24,31:0.56:55
chr21	47847700	rs61735817	C	T	610.81	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr21	47847757	rs55937012	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr21	47848350	rs61735818	G	A	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.759;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-0.764;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:13,54:0.81:67
chr21	47848459	rs2839256	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr21	47848554	rs60356719	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr21	47850155	rs1023160	G	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr21	47850405	rs2839257	C	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	47850484	rs2070426	G	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.218;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr21	47851636	rs743346	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr21	47851753	rs2073376	A	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	47852151	rs5844270	A	AG	325.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	47856053	rs61735826	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr21	47856106	rs2236616	C	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr21	47862624	rs2839262	A	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	47862654	rs17372047	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr21	47863757	rs2073380	A	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr21	47864560	rs143709505	CTTT	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-1.048;QD=7.59;ReadPosRankSum=-1.729;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr21	47878892	rs11701121	T	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	47904569	rs2032111	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr21	47904585	rs718496	A	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr21	47910523	rs7279002	A	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:51,22:0.30:73
chr21	47910659	rs9976530	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr21	47917047	rs11315869	CT	C	2596.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr21	47917137	rs74432771	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr21	47957332	rs2070432	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr21	47959692	rs1008548	G	A	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.971;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr21	47959698	rs1008549	C	T	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.701;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr21	47961711	rs2070435	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:86,31:0.26:117
chr21	47966810	rs2839318	G	C	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:27,77:0.74:104
chr21	47971539	rs2255526	G	A	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	47974582	rs1107065	A	G	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=0.537;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:138,74:0.35:212
chr21	47978321	rs34920477	G	GC	2401.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;MQ=60.32;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	47978413	rs76448901	C	T	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=0.420;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:31,56:0.64:87
chr21	47980512	rs79534140	A	G	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,48:0.87:55
chr21	47980570	rs2070429	A	G	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	47980800	rs76005530	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr21	47983657	rs762253	G	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr21	47983680	rs762254	G	A	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.795;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:37,54:0.59:91
chr21	47985507	rs2839332	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr21	47985554	rs143626098	T	TG	220.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr21	47986633	rs3819044	C	A	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr21	47987547	rs8127941	C	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr21	48019239	rs9722	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.044;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr21	48022144	rs2839356	T	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr21	48022175	rs80199493	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr21	48022230	rs1051169	C	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr21	48022375	rs2186358	C	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	48069930	rs2839373	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr21	48072916	rs2839376	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr21	48083526	rs77930122	T	C	422.82	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr22	17055458	rs35893428	G	A	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr22	17063359	rs2006108	A	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	17072483	rs2236639	A	G	12259.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr22	17073066	rs5747988	A	G	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr22	17326914	rs165927	G	A	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	17327068	rs165588	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	17445502	rs5748765	A	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr22	17446991	rs4819925	C	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	17449076	rs5748768	C	G	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	17469026	rs5992604	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	17469049	rs28502153	C	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	17488727	rs5748800	A	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	17488823	rs11378060	C	CG	1738.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	17565888	rs13053694	C	A	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	17565932	rs917864	T	C	9147.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr22	17565974	rs917865	G	C	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr22	17566206	rs2270241	G	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	17566229	rs2270242	T	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	17579956	rs9606614	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	17582788	rs41454546	C	T	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr22	17585808	rs721930	G	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:3,98:0.97:101
chr22	17586471	rs2241046	C	T	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	17586583	rs2241047	C	G	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	17586609	rs144979983	GT	G	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	17586614	rs35078252	G	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	17586631	rs4819959	G	A	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	17586715	rs56736183	ATCAC	A	3358.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	17600148	rs9605220	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	17600689	rs61741012	G	A	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr22	17602839	rs5992629	G	A	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	17603477	rs5748871	A	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	17623837	rs5747009	A	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	17623880	rs34058953	G	GC	1995.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	17629544	rs3214349	G	GA	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	17630378	rs2286956	G	A	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	17630486	rs1034859	C	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	17640045	rs7287672	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	17640399	rs148919630	G	GGGC	1613.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	17662679	rs41282461	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	17662699	rs58754958	A	G	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	17662793	rs7289170	A	G	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	17662917	rs3764846	G	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	17669151	rs2231496	C	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	17669406	rs9619005	G	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	17671133	rs2286348	C	G	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:3,204:0.99:207
chr22	17956759	rs4819593	C	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	17978600	rs7284169	G	C	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	18030096	rs66840782	TA	T	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.446;QD=1.69;ReadPosRankSum=-0.995;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:98,45:0.31:143
chr22	18084001	rs5747254	T	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr22	18171650	rs5013026	C	T	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	18178859	rs2257083	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	18209613	rs4488761	A	G	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	18218464	rs181382	T	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	18218475	rs181383	C	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	18222263	rs181390	A	G	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	18233000	rs181405	G	A	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	18257138	rs443912	T	G	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	18273463	rs62238879	G	A	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	18300240	rs5992854	T	C	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr22	18300775	rs61744842	G	A	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:11,269:0.96:280
chr22	18304695	rs5992112	A	G	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	18304753	rs67527329	T	C	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:6,174:0.97:180
chr22	18304784	rs5992113	A	C	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:12,273:0.96:285
chr22	18304821	rs45514595	G	A	9637.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:13,364:0.97:377
chr22	18304891	rs45544141	C	T	11347.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:9,437:0.98:446
chr22	18304978	rs45572336	G	A	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:3,160:0.98:163
chr22	18310299	rs73151024	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	18310363	rs5992872	C	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	18310367	rs5992121	T	C	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	18310439	rs61744286	G	A	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr22	18310700	.	T	TACACAC,TACACACAC	909.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=29;set=Intersection	GT:AF:DP	1/2:0.29,0.71:21
chr22	18314678	rs374869878	TTCC	T	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.177;QD=0.81;ReadPosRankSum=0.029;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:109,11:0.09:120
chr22	18324564	rs750559	C	T	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr22	18370066	rs4819472	C	A	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr22	18463608	rs8140977	C	T	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:5,78:0.94:83
chr22	18463747	rs5992941	T	C	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:12,158:0.93:170
chr22	18561657	rs138340258	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr22	18562888	rs464541	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	18571008	rs464385	G	A	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	18609065	rs2234329	G	T	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	18642865	rs147007821	G	A	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:3,109:0.97:112
chr22	18643166	rs2543716	G	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	18649922	rs9605536	A	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr22	18650682	rs3180408	C	T	4597.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.539;MLEAC=2;MLEAF=1.000;MQ=54.34;MQRankSum=-2.335;QD=24.59;ReadPosRankSum=1.999;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:7,180:0.96:187
chr22	18653419	rs2075299	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.01;QD=23.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	18896169	rs426065	C	T	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	18896189	rs425576	T	C	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.26;QD=26.90;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	18897416	rs436638	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.65;QD=23.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	18897795	rs56190723	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr22	18898289	rs441862	G	C	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	18898874	.	G	A	261	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=26;MMLQ=24;MQ=58.09;NF=3;NR=11;PP=261;QD=21.1265151819;SC=TGGGGGCAGAGGCTCAGATTC;SbPval=0.83;Source=Platypus;TC=23;TCF=7;TCR=16;TR=14;WE=18898882;WS=18898865;set=Platypus	GT:AD:AF:DP	1/0:9,14:0.61:23
chr22	18898908	.	A	G	70	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=2;MGOF=39;MMLQ=29;MQ=56.77;NF=2;NR=4;PP=70;QD=17.4618687579;SC=TGGGGGCAGAAGCTCAGATTC;SbPval=0.81;Source=Platypus;TC=16;TCF=7;TCR=9;TR=6;WE=18898916;WS=18898898;set=Platypus	GT:AD:AF:DP	0/1:10,6:0.38:16
chr22	18899016	rs428224	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	18900669	rs383964	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;QD=29.23;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	18900750	rs372055	G	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	18901004	rs450046	C	T	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	18901090	rs385440	A	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	18904414	rs455072	A	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	18904606	rs375115	T	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	18905882	rs2904550	G	T	664.81	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr22	18913312	rs17810231	G	A	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	19026613	rs2072123	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:4,74:0.95:78
chr22	19028476	rs2073775	T	C	6196.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.006;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.15;ReadPosRankSum=-1.520;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:4,143:0.97:147
chr22	19028480	rs2073774	T	C	6246.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.949;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.37;ReadPosRankSum=-1.206;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:4,147:0.97:151
chr22	19034079	rs715539	A	C	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	19034240	rs2012929	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	19048413	rs2238739	A	G	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:6,183:0.97:189
chr22	19048436	rs62221717	G	A	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:8,191:0.96:199
chr22	19050599	rs111427599	T	TCCATGTC	6784.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:5,145:0.97:150
chr22	19050635	rs5993488	G	A	7628.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:6,277:0.98:283
chr22	19050878	rs9617765	A	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:4,58:0.94:62
chr22	19055542	rs17743576	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr22	19077049	rs2800960	C	T	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	19109609	rs62223868	A	C	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	19109753	rs11550628	A	G	1953.85	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:4,52:0.93:56
chr22	19109764	rs11550626	A	G	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.97;ReadPosRankSum=0.431;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:4,45:0.92:49
chr22	19109812	rs11550627	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr22	19163577	rs35359423	C	CAT	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	19172006	rs1018764	T	C	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	19184095	rs1061325	T	C	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	19187375	rs9605957	G	A	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	19187427	rs2236759	C	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	19189003	rs11386977	A	AC	5100.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	19197896	rs698423	T	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	19211665	rs9604935	C	T	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	19217613	rs2800963	C	T	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=42.82;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	19217617	rs113338080	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=44.88;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	19217621	rs9306213	G	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=43.95;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	19220648	rs807458	G	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	19318622	rs1210690	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	19349590	rs916594	G	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	19371052	rs34292276	C	T	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	19419093	rs8140291	A	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	19455376	rs5746742	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	19455836	rs756658	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	19455871	rs756657	A	C	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	19458224	rs5993648	C	T	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	19462466	rs5746744	C	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	19467652	rs5748232	T	C	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr22	19468655	rs5993650	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	19471609	rs737858	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	19492692	rs8136840	C	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	19495967	rs2073736	G	A	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	19504318	rs2073733	G	A	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	19504470	rs2073732	T	C	10162.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr22	19506456	rs2073760	G	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	19511925	rs885985	G	A	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr22	19712094	rs1059196	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	19748312	rs72646951	G	C	141.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.66;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr22	19751829	rs2301558	C	T	11797.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.098;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.59;ReadPosRankSum=-0.044;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:12,449:0.97:461
chr22	19753379	rs41298836	C	T	7528.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,277:0.99:279
chr22	19753961	rs13054377	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	19794366	rs737860	C	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	19867995	rs189112219	G	A	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr22	19868218	rs1139793	A	G	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	19882492	rs35599379	CA	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=11.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-2.190;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr22	19882630	rs5993856	G	A	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr22	19882984	rs5992495	T	G	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:7,221:0.97:228
chr22	19885548	rs12169091	G	T	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:3,105:0.97:108
chr22	19886797	rs8142006	G	A	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	19898659	rs149796774	GC	G	837.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	19898837	rs885987	A	G	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	19905802	rs756661	G	A	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	19906306	rs3747067	C	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	19906511	rs11541479	G	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr22	19906693	rs146802029	AAC	A	735.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	19907118	rs5748470	G	A	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	19907192	rs5748471	A	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	19920949	rs10483103	G	A	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr22	19921003	rs5746847	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	19950428	rs2239393	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	19951207	rs4818	C	G	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr22	19954916	rs113895332	A	AT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.129;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:152,36:0.19:188
chr22	19956262	rs362204	G	GC	1698.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr22	19958669	rs165849	G	A	10281.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr22	19959366	rs165824	G	A	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	19959473	rs165815	C	T	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	19959955	rs2073744	A	G	8875.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	19960188	rs2518823	T	C	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	19964418	rs2240718	T	G	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	19969075	rs2073747	A	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	20020889	rs9605051	T	C	4190.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:5,161:0.97:166
chr22	20074295	.	T	TAA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.22;ReadPosRankSum=0.674;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr22	20109677	rs11705021	G	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	20136263	rs175181	G	A	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:3,78:0.96:81
chr22	20255020	rs854929	T	C	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	20295420	rs4425183	G	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	20303854	rs5993964	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	20307256	rs7235	G	A	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	20385706	rs79640249	G	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.41;QD=24.12;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	20385739	rs146242498	TTGTC	T	2347.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.67;QD=44.30;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	20394502	rs201085493	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.01;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	20394526	rs201289136	C	T	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.03;QD=21.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	20718525	rs2277833	T	C	2753.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.75;MQRankSum=0.708;QD=29.61;ReadPosRankSum=-0.386;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:3,90:0.97:93
chr22	20718692	rs1807536	G	A	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	20721058	rs71312755	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=52.30;MQRankSum=-2.061;QD=0.54;ReadPosRankSum=-3.381;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:102,17:0.14:119
chr22	20724622	rs79737013	C	T	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr22	20749051	.	CT	C	1210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.397;QD=11.53;ReadPosRankSum=-0.172;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:19,86:0.82:105
chr22	20755098	rs1990249	A	G	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr22	20755226	rs4581986	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	20759534	rs5761555	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr22	20779604	rs7286419	T	G	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	20779768	rs874101	G	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	20779946	rs759612	C	G	871.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	20779946	.	CG	GC	435	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=1;HapScore=2;MGOF=41;MMLQ=20;MQ=60.0;NF=7;NR=4;PP=435;QD=44.406170442;SC=TTGCCGCGCACGTCAGCGGCC;SbPval=0.6;Source=Platypus;TC=11;TCF=7;TCR=4;TR=11;WE=20779955;WS=20779936;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	20779947	rs759611	G	C	871.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	20779973	rs5844418	C	CG	507.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	20780024	rs5844420	G	GC	936.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	20780029	rs370015834	G	GC	937.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.89;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	20780031	rs2329378	G	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	20780091	rs759610	C	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	20780097	rs759609	G	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	20791821	rs9619753	G	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	20795757	rs1153427	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	20811930	rs362087	C	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	20843885	rs165613	T	G	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	20862646	rs5750324	T	G	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	20891259	rs2269830	C	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	20891545	rs4821915	A	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	20891568	rs2269831	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	20920813	rs71769813	ACAG	A	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.753;QD=2.32;ReadPosRankSum=-0.494;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:146,22:0.13:168
chr22	21034809	rs28668558	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;MQ=58.83;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	21045617	rs1807465	G	A	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.95;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	21064356	rs5760149	A	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	21066789	rs5996654	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	21066897	rs1135929	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.51;QD=30.60;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	21066930	rs2629351	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.19;QD=41.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	21068878	rs2329478	C	T	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	21073122	rs1807692	G	A	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	21075537	rs5751800	A	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	21079909	rs5751806	A	G	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	21080721	rs11462205	T	TG	3425.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	21081964	rs4820583	C	T	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	21088146	rs17819969	C	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	21107153	rs2329583	T	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	21107183	rs77534188	G	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr22	21138544	rs5902	C	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr22	21140117	rs117300316	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr22	21141300	rs4675	T	C	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr22	21141392	rs55796662	C	T	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:3,68:0.96:71
chr22	21147293	rs165793	A	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	21150340	rs165924	T	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	21157346	rs60466897	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr22	21173871	rs75618395	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	21174312	rs165691	C	A	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	21178484	rs165733	C	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	21178723	rs3788327	A	C	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:3,107:0.97:110
chr22	21188732	rs165729	C	A	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	21213224	rs5844442	G	GC	2153.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:5,82:0.94:87
chr22	21311531	rs81027	C	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr22	21311721	rs178251	T	G	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:5,257:0.98:262
chr22	21322325	rs11334069	TC	T	5299.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.203;QD=29.44;ReadPosRankSum=-0.135;SOR=5.739;set=HC	GT:AD:AF:DP	1/1:1,179:0.99:180
chr22	21322351	rs178254	T	C	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	21322376	rs74610147	T	G	4933.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=7.186;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	21322377	rs75810376	C	G	4933.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=7.168;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	21322380	rs71317868	A	G	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.01;SOR=7.941;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	21322383	rs432390	A	G	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.69;SOR=7.804;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	21327834	rs178265	C	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.71;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	21329123	rs733455	A	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	21330787	rs7285694	C	T	7188.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	21331043	rs178269	A	T	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	21331918	rs178275	C	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	21331950	rs178276	C	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	21332122	rs178277	G	A	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr22	21334924	rs105034	G	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	21335259	rs178278	C	A	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	21337266	rs178280	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	21337415	rs178281	C	G	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	21341677	rs58365624	C	CA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.234;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr22	21342169	rs178289	G	C	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr22	21342509	rs2269779	C	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	21343982	rs138025454	TGGGGAGCCAGGGCGCAGGTAGAGGAGGTGAGGGGCAC	T	3584.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	21354970	rs426938	C	G	8411.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr22	21356029	rs2075269	T	C	3054.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.05;ReadPosRankSum=-1.355;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:4,123:0.97:127
chr22	21356538	rs368989	A	T	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr22	21356549	rs385427	T	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr22	21356566	rs369250	A	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr22	21365668	rs1210564	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	21365743	rs389623	GG	AT	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=41.51;QD=41.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	21369676	rs3893495	G	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	21372405	rs2073598	G	T	9749.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,375:1.00:376
chr22	21372467	rs2073599	C	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	21377301	rs1548411	C	A	8456.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:5,314:0.98:319
chr22	21377958	rs929671	A	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr22	21388605	rs2541956	T	C	842.98	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:3,34:0.92:37
chr22	21400282	rs12170538	G	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr22	21401570	rs73164868	G	A	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr22	21401833	rs73164869	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:3,62:0.95:65
chr22	21403226	rs73164871	G	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	21403375	rs28504593	CC	AT	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.191;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.29;MQRankSum=-0.037;QD=11.59;ReadPosRankSum=-1.340;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr22	21411598	rs46148	T	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	21576361	rs200542750	T	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.36;QD=26.65;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	21797094	rs486362	C	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.46;QD=42.28;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	21797102	rs1210228	G	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.84;QD=40.59;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	21800042	rs467181	T	C	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr22	21800444	rs128477	T	C	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr22	21822666	.	G	C	1224.77	.	AC=2;AF=1.00;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr22	21822725	rs430214	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	21822744	rs395295	G	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	21829480	rs402694	G	T	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.59;QD=24.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	21829507	rs140118179	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.78;QD=47.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	21829513	rs113567369	TTGTC	T	798.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.65;QD=42.04;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	21830934	.	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.07;MQRankSum=-1.812;QD=7.52;ReadPosRankSum=-0.274;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr22	21832031	.	A	G	376.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.88;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	21832041	.	G	A	540.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.30;QD=36.05;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	21842655	rs143994138	C	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=33.73;SOR=6.666;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	21846284	rs149272448	A	G	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.12;QD=19.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	21846328	.	GC	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=35.35;MQRankSum=1.006;QD=6.34;ReadPosRankSum=-1.100;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr22	21968716	rs3831682	CA	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=6.202;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.357;QD=2.73;ReadPosRankSum=1.137;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr22	21988599	rs371513	G	A	9796.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:3,357:0.99:360
chr22	22007143	rs395006	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	22007370	rs372150	T	C	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	22024507	rs402225	G	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	22036832	rs1669112	T	C	3848.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:6,153:0.96:159
chr22	22042079	rs741617	G	T	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr22	22042918	rs2278118	C	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:3,50:0.94:53
chr22	22048770	rs2070504	C	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	22057997	rs147967901	C	CGGG	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.53;ReadPosRankSum=0.896;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chr22	22058000	rs861814	C	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:3,31:0.91:34
chr22	22058586	rs861813	T	C	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	22160384	rs3729912	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	22330082	rs239927	T	C	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	22516883	rs34221567	TC	T	13365.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr22	22516998	rs2073453	C	T	8922.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr22	22517026	rs738885	T	C	8473.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr22	22517205	rs737842	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	22698027	rs1894246	A	G	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	22782150	rs56060925	G	A	14876.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:18,591:0.97:609
chr22	22782394	rs165704	A	G	9272.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr22	22786410	rs165657	C	T	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	22842206	rs11109	T	C	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	22842957	rs2236729	T	G	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	22843118	rs2236730	C	T	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	22868211	rs361558	G	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	22868493	rs361666	G	T	10788.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr22	22868497	rs361762	G	C	10722.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr22	22868773	rs361737	G	A	7840.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.31;QD=45.06;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	22868776	rs362173	G	A	7838.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.32;QD=44.79;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	22869123	rs362003	T	C	10082.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr22	22869209	rs362124	C	G	16024.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr22	22869218	rs362132	T	C	15611.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr22	22869538	rs361611	A	G	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	22869545	rs361580	T	G	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.57;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	22869548	rs362011	T	C	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	22869649	rs361721	G	C	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	22869742	rs361959	C	A	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=2.174;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	22891081	rs2072049	G	T	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.20;SOR=2.041;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	22899234	rs1129172	A	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	22899363	rs8139318	GA	AG	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	22899414	rs2283800	A	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	22930770	rs6002909	A	G	8403.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr22	22989256	rs2904923	A	G	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	23010943	rs406876	G	A	7952.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:4,295:0.99:299
chr22	23029263	rs443102	T	C	12718.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr22	23029374	rs451369	G	A	13692.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr22	23029698	rs443756	T	C	7752.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr22	23029718	rs199561156	A	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=8.509;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-7.670;QD=1.07;ReadPosRankSum=-3.884;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:287,54:0.16:341
chr22	23029846	rs200665672	T	C	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:98,39:0.28:137
chr22	23029871	.	C	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.928;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=12.670;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.054;QD=5.97;ReadPosRankSum=-2.171;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:63,20:0.24:83
chr22	23029876	.	C	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=7.036;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-4.803;QD=6.28;ReadPosRankSum=-0.859;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr22	23040362	rs5996349	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	23040389	rs6003229	G	C	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	23040462	rs1312	T	C	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	23040767	rs5751516	G	T	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	23055331	rs1972840	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	23055421	rs1985790	G	A	6382.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	23055440	rs1008910	C	A	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	23055533	rs4446155	G	A	8285.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=44.07;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	23055539	rs1985791	G	T	8477.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=43.25;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	23055752	rs2304533	C	T	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	23063645	rs11090173	T	G	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	23077555	rs4822296	T	C	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	23077690	rs4822297	C	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	23089759	rs2040563	A	T	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	23089826	rs1978004	G	A	7970.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr22	23089857	rs2040564	G	A	12358.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=43.21;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr22	23089865	rs2040565	A	G	12240.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=43.25;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr22	23089941	rs3087123	ACT	A	11488.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr22	23090423	rs34605189	G	C	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	23090438	rs56223989	A	G	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	23090468	rs58198190	C	T	1750.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.913;MLEAC=2;MLEAF=1.000;MQ=40.40;MQRankSum=-2.162;QD=30.72;ReadPosRankSum=-1.172;SOR=1.877;set=HC	GT:AD:AF:DP	1/1:2,55:0.96:57
chr22	23090475	rs58580735	T	C	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.78;QD=43.52;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	23101247	rs4822303	GC	AT	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	23101280	rs1894244	C	T	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	23101301	rs4822305	A	G	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	23101347	rs1894245	G	A	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	23101523	rs3737543	G	A	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	23101559	rs4134484	G	T	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	23114239	rs8138758	T	C	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	23114285	rs8138785	T	C	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	23114327	rs6003299	T	C	12188.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr22	23114350	rs5996382	A	G	12475.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr22	23114748	rs71917069	CT	C	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.826;QD=3.42;ReadPosRankSum=-2.509;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:46,27:0.37:73
chr22	23114993	rs2073451	G	A	13686.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr22	23135588	rs2016511	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	23165839	rs5844528	G	GC	4357.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	23223261	rs12628851	G	T	8330.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.870;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.04;ReadPosRankSum=1.032;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:5,198:0.98:203
chr22	23223278	rs394321	A	T	9113.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.62;ReadPosRankSum=0.163;SOR=0.501;set=HC	GT:AD:AF:DP	1/1:6,230:0.97:236
chr22	23241620	rs462915	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr22	23241705	rs62218846	G	A	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr22	23241753	rs202036213	T	TA	5853.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:5,153:0.97:158
chr22	23241864	rs463830	G	A	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	23243489	rs139432625	AC	A	90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=22.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	23247028	rs464478	A	G	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	23248758	rs1059142	G	A	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=6.614;MLEAC=1;MLEAF=0.500;MQ=46.60;MQRankSum=-1.390;QD=10.34;ReadPosRankSum=-0.030;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:46,49:0.52:95
chr22	23248845	rs71815924	AC	A	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.262;MLEAC=1;MLEAF=0.500;MQ=44.88;MQRankSum=0.158;QD=10.80;ReadPosRankSum=-1.313;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr22	23256464	rs463185	G	C	7903.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr22	23260278	rs59884698	CGG	C	4797.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	23260507	rs410521	T	A	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	23262162	rs375081	C	A	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	23263602	rs373405	C	T	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	23481133	.	G	GA	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-1.099;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:109,47:0.30:156
chr22	23505101	rs5844548	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=2.639;QD=0.90;ReadPosRankSum=-0.448;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr22	23523073	.	G	GC	367.74	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	23523082	rs199698427	G	GC	474.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	23541309	rs371236578	CA	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.604;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr22	23627369	rs140504	A	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	23627441	rs131675	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	23627475	rs373334393	A	T	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	23632665	rs131677	C	A	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	23656148	rs66569843	T	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr22	23657477	rs180810	A	G	1038.03	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:2,25:0.93:27
chr22	23657495	rs180811	C	G	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr22	23657735	rs180812	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	23735649	rs8135826	C	A	1578.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.514;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.506;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.29;ReadPosRankSum=1.730;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:2,63:0.97:65
chr22	23915340	rs1064417	T	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	23961742	rs5844566	G	GGCACCCATAA	2617.82	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr22	23962744	rs72559613	T	TTTC	8828.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	23982724	rs56397271	T	C	13731.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;MQRankSum=9.424;QD=42.78;ReadPosRankSum=0.009;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:6,315:0.98:321
chr22	23982727	rs28645846	A	G	13863.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;MQRankSum=9.288;QD=42.66;ReadPosRankSum=0.105;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:6,319:0.98:325
chr22	24034288	rs738786	A	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr22	24035970	rs2070446	C	T	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	24038847	rs1007298	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	24106674	rs140181	G	A	7125.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	24108288	rs140182	C	G	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	24108412	rs80027270	G	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	24109550	rs131444	T	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	24109774	rs179468	T	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	24121378	rs738792	C	T	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	24122499	rs9612427	G	A	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	24125565	rs2877173	G	A	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	24129240	rs11090285	C	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr22	24129553	rs55705149	GGC	G	1382.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=34.57;SOR=5.031;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	24135968	rs11413092	C	CT	236.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=1.525;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr22	24143502	rs738797	C	G	7867.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr22	24145395	rs5760030	A	G	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	24145675	rs5751738	G	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	24176959	rs35305666	CA	C	5075.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	24179724	rs2070462	G	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	24209759	rs2330626	G	C	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	24210050	rs4428104	A	C	149.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	24224655	rs9608213	G	A	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	24224659	rs9612499	C	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	24226242	rs2070460	A	G	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	24237463	rs2070767	T	C	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	24325006	rs200925305	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.98;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	24325024	rs201723657	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.98;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	24325047	rs149686121	C	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.98;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	24340650	rs11343686	GT	G	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.413;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr22	24340938	rs140290	A	G	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	24345691	rs140302	A	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.63;QD=26.55;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	24376322	rs4630	G	A	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	24377034	rs140308	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	24383954	rs140313	C	T	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr22	24452885	rs2070467	A	G	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr22	24459438	rs762273	T	C	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr22	24472270	rs2283807	A	G	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:6,95:0.94:101
chr22	24480503	rs4820581	G	A	5020.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=-0.958;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:6,193:0.97:199
chr22	24492061	rs2236622	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr22	24578987	.	T	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-4.424;QD=8.47;ReadPosRankSum=-2.976;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr22	24578995	rs62231980	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-4.369;QD=7.92;ReadPosRankSum=-1.948;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr22	24579049	rs62231981	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr22	24579157	rs200945728	GA	TC	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,62:0.36:172
chr22	24579219	rs399140	G	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=27.052;MLEAC=1;MLEAF=0.500;MQ=51.96;MQRankSum=-4.742;QD=0.99;ReadPosRankSum=-0.743;SOR=4.869;set=HC	GT:AD:AF:DP	0/1:72,11:0.13:83
chr22	24717850	rs204710	A	G	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	24761467	rs204718	G	A	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	24837301	rs5751876	T	C	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	24891292	rs2070474	C	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	24898310	rs2232866	C	T	11661.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:10,428:0.98:438
chr22	24936970	rs9704	A	G	9422.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr22	24938908	rs8139822	A	G	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	24944053	rs4822506	C	T	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	24944782	rs1003580	A	G	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	24953479	rs11427005	C	CT	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=1.128;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr22	24953571	rs5760472	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	24964128	rs4597	T	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	25119284	rs131472	G	A	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	25119300	rs140345	T	C	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	25144912	rs11703684	C	T	10571.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr22	25145453	rs1892723	C	T	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	25145471	rs1892722	A	G	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	25147324	rs11705460	A	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	25150694	rs8142601	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	25151781	rs372796098	C	T	5863.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:6,226:0.97:232
chr22	25151890	rs143403523	CA	C	1024.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.80;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	25282765	rs139719	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	25291076	rs5760712	C	T	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:3,48:0.94:51
chr22	25291095	rs5760713	C	A	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:3,70:0.96:73
chr22	25291182	rs143669914	TTTC	T	6792.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	25297755	rs139738	G	A	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:6,144:0.96:150
chr22	25297965	rs139739	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	25315753	rs5752018	G	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr22	25334037	rs10658230	C	CTCATTCAT	4229.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.834;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.217;QD=43.16;ReadPosRankSum=0.226;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:2,96:0.98:98
chr22	25586744	rs2330986	T	G	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	25617602	rs739315	A	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	25624049	rs5760923	G	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:4,80:0.95:84
chr22	25625554	rs55700037	G	A	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:5,100:0.95:105
chr22	25713933	rs133156	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	25714153	rs28520031	C	T	7774.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:5,291:0.98:296
chr22	25714218	rs2072869	A	T	7069.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr22	25716068	rs133162	C	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	25750814	rs141812512	C	CAGGGCA	3665.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	25753231	rs133194	G	A	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	26118081	rs28763892	A	G	251.96	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr22	26166900	rs3859866	G	C	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	26173484	rs12170856	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	26173661	rs5761170	T	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	26173888	rs9624897	G	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	26219412	rs5752226	T	C	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	26219723	rs143285237	C	CT	973.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	26222247	rs8143030	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	26222454	rs9624909	C	T	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	26224632	rs3848861	G	A	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	26228757	rs35045598	TA	T	2394.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	26228797	rs3859879	A	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	26273834	rs4822666	A	C	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	26273834	.	ACG	CCT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=22;MQ=60.0;NF=59;NR=35;PP=2947;QD=20;SC=ATTCCTCCTAACGGAAACTTT;SbPval=0.54;Source=Platypus;TC=94;TCF=59;TCR=35;TR=94;WE=26273858;WS=26273824;set=Platypus	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	26273836	rs4822667	G	T	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	26273850	rs695428	G	C	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	26273893	rs4822668	G	C	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	26294124	rs2072004	T	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	26294513	rs2066935	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	26298754	rs2072016	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	26298874	rs2072017	T	C	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	26304363	rs58609797	G	A	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:3,66:0.96:69
chr22	26317155	rs739284	A	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr22	26342056	rs4820662	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	26343805	rs2072007	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	26346311	rs10600754	AT	A	421.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=1.039;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr22	26346484	.	A	ATGTGTGTGTATGTGTGTGTG	601	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=28;MQ=64.99;NF=0;NR=2;PP=601;QD=302.0;SC=AACTAATAGGATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=26346492;WS=26346474;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	26346492	rs142426862	G	GTA	139.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.66;QD=23.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	26688388	rs35377445	A	C	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:3,210:0.99:213
chr22	26689201	rs653361	A	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	26690407	rs137204	T	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	26702015	rs1210894	A	C	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	26769234	rs1076660	T	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	26769464	rs5844691	G	GA	686.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.871;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.17;ReadPosRankSum=-0.533;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:4,36:0.90:40
chr22	26769539	rs1076661	A	C	405.98	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr22	26777795	rs482902	A	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	26830478	rs3788398	A	G	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	26853905	rs1894704	C	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	26853980	rs1894705	T	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	26854441	rs1894706	G	A	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	26854682	rs4822722	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	26859942	rs5752330	C	T	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	26860269	rs2014410	G	C	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	26861545	rs3213583	A	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	26862041	rs3747129	G	A	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:5,186:0.97:191
chr22	26862153	rs739289	C	A	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	26862212	rs713998	T	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	26864658	rs739290	A	G	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	26867490	rs5761549	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	26877539	rs739291	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	26879823	rs968425	C	A	112.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	26884039	rs4820682	G	A	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	26886953	rs34878449	GT	G	2365.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:4,111:0.97:115
chr22	26887099	rs4820683	T	A	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	26887829	rs1045523	A	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	26894985	rs2187956	C	T	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	26895061	rs2157586	G	A	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	26895337	rs1008530	G	A	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr22	26899474	rs134136	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	26932150	rs3752523	G	A	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:5,170:0.97:175
chr22	26937327	rs4822735	C	G	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:7,178:0.96:185
chr22	26951317	rs28402932	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	27004089	rs5761626	A	C	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	27019128	rs2071860	C	T	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	27021457	rs5761637	T	C	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	28293980	rs738451	G	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	28316552	.	A	AGTTC	817.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;MQRankSum=2.612;QD=48.11;ReadPosRankSum=-0.718;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr22	28316555	.	T	A	916.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=3.468;MLEAC=2;MLEAF=1.000;MQ=58.91;MQRankSum=2.792;QD=45.84;ReadPosRankSum=-0.696;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr22	28316557	.	AGAAC	A	862.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=3.617;MLEAC=2;MLEAF=1.000;MQ=59.05;MQRankSum=2.963;QD=37.51;ReadPosRankSum=0.000;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr22	28316591	rs75321888	T	TG	1274.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	28386620	rs470100	A	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	29091037	rs5762749	G	C	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr22	29104940	rs374623367	CAA	C,CA	1828.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.000;QD=21.77;ReadPosRankSum=1.053;SOR=1.098;set=HC	GT:AD:AF:DP	1/2:3,58,23:0.69,0.27:84
chr22	29104955	rs5762756	A	C	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=44.16;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	29104959	rs5762757	A	C	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=43.19;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	29152965	rs5752790	G	A	522.90	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr22	29169050	.	AGGGCGGGC	A	48	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9990;HP=3;HapScore=2;MGOF=6;MMLQ=24;MQ=60.0;NF=1;NR=0;PP=48;QD=62.0;SC=CGCAGGGCGCAGGGCGGGCGG;SbPval=0.34;Source=Platypus;TC=3;TCF=1;TCR=2;TR=1;WE=29169065;WS=29169040;set=Platypus	GT:AD:AF:DP	1/1:2,1:0.33:3
chr22	29169832	rs200578812	ATTAC	A	2825.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr22	29179739	rs2347447	C	A	256.81	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr22	29196494	rs5762809	C	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr22	29279991	rs1065497	C	T	1798.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.06;ReadPosRankSum=-0.666;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:2,76:0.97:78
chr22	29413785	rs4823005	A	G	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	29414001	rs2347790	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:4,109:0.96:113
chr22	29438327	rs12484832	A	T	526.85	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr22	29439201	rs9613785	G	A	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	29440692	rs713834	A	C	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	29446611	rs5997435	A	C	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr22	29446975	rs6005967	T	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr22	29449477	rs2294239	A	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	29456733	rs6005977	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	29469130	rs7292708	A	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	29490497	rs134657	G	A	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	29495079	rs134665	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	29562853	rs132316	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	29562893	rs132317	G	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	29659960	rs879580	C	T	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	29688751	rs34395867	CT	C	110.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=0.580;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr22	29692488	rs140065	G	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.83;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	29692497	rs131190	G	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.92;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	29704125	rs11090564	C	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	29707639	rs34777709	G	GC	2182.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr22	29711251	rs2519485	T	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	29727886	rs2857465	T	C	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	29833639	rs174718	C	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;MQ=59.06;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	29837537	rs3804076	T	C	8216.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr22	29837566	rs71324764	TTCC	T	16067.73	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr22	29881884	rs4823040	G	A	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	29885567	rs147489453	A	AAAGTCCCCTGAGAAGGCC	12544.73	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:8,297:0.97:305
chr22	29885591	.	C	CCCTGAGAAGGCCAAGTCA	2963	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=3;HapScore=1;MGOF=17;MMLQ=26;MQ=59.26;NF=33;NR=73;PP=2963;QD=20;SC=AGGCCAAGTCCCCAGAGAAGG;SbPval=0.71;Source=Platypus;TC=226;TCF=78;TCR=148;TR=106;WE=29885599;WS=29885581;set=Platypus	GT:AD:AF:DP	0/1:120,106:0.47:226
chr22	29885861	rs165923	T	C	14812.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:11,561:0.98:572
chr22	29886413	rs165625	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr22	29886893	rs1061373	G	T	515.22	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr22	29904354	rs1049536	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr22	29957321	rs6361	G	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr22	29957911	rs469295	T	C	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	29957944	rs468986	C	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr22	29960335	rs456300	A	G	6653.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:11,256:0.96:267
chr22	29966083	rs456285	C	T	2579.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=-0.573;SOR=0.452;set=HC	GT:AD:AF:DP	1/1:1,96:0.99:97
chr22	29966576	rs143371822	T	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	30034994	rs5763378	G	T	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr22	30077361	rs140086	G	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	30124614	rs140096	A	T	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr22	30124833	rs140097	T	C	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	30138548	rs140120	T	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	30138689	rs140121	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	30184950	rs7954	A	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	30188611	rs9614057	T	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr22	30200893	rs2074706	G	C	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	30200936	rs36572	T	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.64;SOR=1.919;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	30202774	rs737945	G	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	30212194	rs713656	C	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	30217827	rs2057882	A	T	284.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	30217992	rs5763521	C	T	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.23;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	30221826	rs9306465	T	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	30223746	rs147155722	G	GACACAC	798.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.28;ReadPosRankSum=0.599;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:2,22:0.92:24
chr22	30223796	rs148580571	T	TCTC	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	30229399	rs3958025	C	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	30234192	.	T	TGCCGCC	3575.73	.	AC=2;AF=1.00;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	30366924	rs34749290	C	CT	446.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.689;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=-0.263;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:4,24:0.86:28
chr22	30374281	rs9306468	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	30374621	rs997913	T	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	30384572	rs5763671	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	30394623	rs5763689	T	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	30640595	rs929273	G	A	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	30660517	rs1476576	A	C	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr22	30681797	rs6147585	T	TCTGCCCCAGCCCTTGGTGCTCCCC	6345.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	30685560	rs1860217	G	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	30691631	rs2097919	G	A	8617.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:8,321:0.98:329
chr22	30714684	rs740219	A	C	7159.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr22	30736147	rs2074732	G	A	639.74	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chr22	30738161	rs9608885	C	T	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:4,186:0.98:190
chr22	30738737	rs5753080	G	A	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.92;SOR=1.311;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	30742623	rs740221	T	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr22	30752696	rs5994293	G	T	1133.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.033;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.62;ReadPosRankSum=0.841;SOR=0.144;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr22	30770603	rs5749082	T	A	8416.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr22	30771554	rs2015035	T	G	14028.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:1,520:1.00:521
chr22	30772228	.	CT	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=2.088;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr22	30774340	rs9619104	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	30776419	rs757870	T	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	30780503	rs41282469	G	A	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr22	30781774	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.701;QD=1.72;ReadPosRankSum=-0.061;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr22	30782089	rs5997629	A	G	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	30793137	rs757660	G	A	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:5,164:0.97:169
chr22	30793270	rs887098	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr22	30795484	rs5753124	G	C	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	30802444	rs2072157	C	T	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr22	30803702	.	C	CT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.132;QD=2.70;ReadPosRankSum=-0.556;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr22	30812549	rs5997642	C	G	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	30822920	rs5844906	T	TG	4461.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	30823065	rs2072159	G	A	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:3,52:0.95:55
chr22	30823196	rs5753130	T	C	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:6,201:0.97:207
chr22	30856121	rs35764129	G	A	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:4,79:0.95:83
chr22	30857373	rs2240345	A	C	6259.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:5,234:0.98:239
chr22	30857448	rs5749104	A	G	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:3,234:0.99:237
chr22	30860830	rs2269961	C	T	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:4,167:0.98:171
chr22	30862146	rs1047917	C	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	30862400	rs1057995	T	A	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:3,122:0.98:125
chr22	30863163	rs5997653	C	T	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:4,44:0.92:48
chr22	30863234	rs151165173	A	ACATCCATCCATC	410.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	30864692	rs4820854	G	A	10028.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:11,394:0.97:405
chr22	30864817	rs2269963	A	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:6,89:0.94:95
chr22	30867139	rs5997658	GC	TT	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	30927975	rs5749118	C	T	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr22	30973268	rs41282481	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	31059250	rs2240002	T	G	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	31089958	rs11383654	G	GA	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.725;QD=9.62;ReadPosRankSum=-0.176;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:13,30:0.70:43
chr22	31266546	rs2301816	T	C	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:5,160:0.97:165
chr22	31266777	rs4820909	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	31301734	rs10625967	A	AGG	4691.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	31342594	rs5753403	C	T	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	31489887	.	G	C	3971.77	.	AC=2;AF=1.00;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr22	31491295	rs3205187	G	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr22	31493460	rs5753458	T	C	612.28	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr22	31494568	rs33991833	A	AC	2006.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr22	31494866	rs4281997	G	T	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr22	31496837	rs13054770	C	A	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	31497054	rs5753459	A	C	2442.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=0.443;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:4,92:0.96:96
chr22	31497110	rs35657209	G	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:3,60:0.95:63
chr22	31501788	rs11705137	T	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:3,47:0.94:50
chr22	31503560	rs13053829	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	31503580	rs140459227	GC	G	1053.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=39.03;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	31518824	rs8137317	A	T	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	31521850	rs2240431	A	C	17102.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:17,635:0.97:652
chr22	31522064	rs7284757	G	A	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr22	31528932	rs2413027	A	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr22	31529463	rs35342535	C	A	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:4,190:0.98:194
chr22	31532568	rs757872	G	C	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	31532960	rs2232183	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:3,59:0.95:62
chr22	31533967	rs2074739	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr22	31536133	rs2232176	A	C	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:11,168:0.94:179
chr22	31556103	rs5997893	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	31583007	rs5997902	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr22	31600460	rs2413035	T	C	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:3,94:0.97:97
chr22	31602139	rs3208937	A	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	31602187	rs13158	C	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.08;QD=28.75;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	31658281	rs2073857	A	G	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:4,140:0.97:144
chr22	31663842	rs2228619	C	G	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:3,122:0.98:125
chr22	31664032	rs5997929	C	T	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:5,93:0.95:98
chr22	31669267	rs2040532	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	31672676	rs59315359	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	31672752	rs5997933	A	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	31679110	rs2040533	G	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	31685458	rs5753543	G	A	5784.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.52;ReadPosRankSum=1.983;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:11,235:0.96:246
chr22	31687142	rs5753544	G	C	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	31687313	rs4820044	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr22	31724972	rs131207	CA	C	1957.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	31739023	rs145232999	TAC	T	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.054;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:87,12:0.12:99
chr22	31795866	rs4820047	T	C	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	31838085	rs5997988	G	A	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:3,77:0.96:80
chr22	31844293	rs738658	A	C	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	31844373	rs2012451	A	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:4,69:0.95:73
chr22	31846079	rs144780466	C	CT	1201.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr22	31854370	rs4820048	A	G	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr22	31854434	rs11293411	AT	A	2877.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	31957077	rs5998045	A	G	289.89	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr22	31971071	rs71679890	CGTGTGTGTGTGTGTGTGT	C	931.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.35;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	31971172	rs10657905	A	ATCT	3224.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	31971258	rs5753700	T	C	5220.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	31971282	rs16989291	T	C	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:6,118:0.95:124
chr22	31976235	rs56338522	A	G	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:6,156:0.96:162
chr22	31976451	rs11347644	AC	A	1985.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr22	31983287	rs112798271	A	ATTTGTTTTGT	3796.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	31985385	.	T	TA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.065;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr22	32002294	rs5753723	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	32007863	rs55883820	C	T	4733.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=-0.799;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:2,186:0.99:188
chr22	32011225	rs12171042	T	C	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr22	32012634	rs738684	C	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	32014250	rs56219558	G	A	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	32015406	rs14034	T	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	32015450	rs9956	T	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	32021703	rs368706009	C	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:7,77:0.92:84
chr22	32046512	rs200466585	C	CA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.526;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr22	32081436	rs33960159	CA	C	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.098;QD=9.95;ReadPosRankSum=-0.026;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:18,46:0.72:64
chr22	32097775	rs6518754	T	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr22	32179850	rs138286	G	C	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	32205703	rs76200772	C	T	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr22	32266546	rs5994441	A	T	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	32340565	rs71697452	TGCCTGCA	T	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	32340837	rs71845980	CG	C	359.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	32340880	rs138873821	C	CG	298.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	32341669	rs2301415	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	32341684	rs7290696	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	32343613	rs10631788	G	GCTCT	2687.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	32346468	rs4820059	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	32352791	rs1049583	G	A	9834.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr22	32478972	rs131880	A	AG	5316.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	32482127	.	CA	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-0.972;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr22	32482321	rs5998233	T	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr22	32500704	rs201317467	G	GC	1658.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:3,58:0.95:61
chr22	32545849	rs58570639	C	CA	1568.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	32546946	rs2019949	C	T	1924.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.838;MLEAC=2;MLEAF=1.000;MQ=58.30;MQRankSum=-1.033;QD=22.38;ReadPosRankSum=0.175;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:5,81:0.94:86
chr22	32547012	rs3888536	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr22	32547086	rs2019952	C	T	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	32547504	rs55920759	G	A	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:7,182:0.96:189
chr22	32547626	rs5998254	T	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr22	32547861	rs11272724	TTGGGAAAGACAGAGGAG	T	361.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	32554985	rs5998267	A	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:6,128:0.96:134
chr22	32579550	rs136428	T	C	6849.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	32579559	rs136429	A	G	6966.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	32579676	rs136430	A	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	32579751	rs136431	C	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	32586632	rs136466	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	32586854	rs136467	C	T	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	32586875	rs136468	G	A	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.06;QD=45.04;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	32586878	rs136469	A	G	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.03;QD=45.04;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	32586926	rs136470	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.99;QD=31.95;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	32587023	rs55974778	C	G	12077.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.17;QD=45.75;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr22	32587027	rs136472	G	C	12276.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.45;QD=44.00;SOR=1.406;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr22	32587478	rs136473	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	32589023	rs136478	C	T	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr22	32589034	rs136479	T	C	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr22	32590448	rs3986037	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	32590471	rs3986038	G	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	32590522	rs136484	T	C	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	32617062	rs5998317	G	A	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	32621619	rs2294208	C	T	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,209:0.99:211
chr22	32626908	rs2068209	G	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	32633505	rs5998328	G	T	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	32756652	rs201161881	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=6.609;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-12.113;QD=0.63;ReadPosRankSum=-1.482;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:167,28:0.14:195
chr22	32756684	rs61729165	C	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.512;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.883;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-14.060;QD=2.34;ReadPosRankSum=-0.503;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:169,48:0.22:217
chr22	32756703	rs73166367	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.928;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-13.668;QD=2.56;ReadPosRankSum=0.322;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:169,52:0.24:221
chr22	32756744	rs2076035	A	G	4042.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:48,169:0.78:217
chr22	32783904	rs12530	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	32790116	.	G	T	52.82	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.21;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr22	32790117	.	A	T	52.82	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.21;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr22	32791003	rs2072818	A	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	32791929	rs3215463	GC	G	264.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr22	32795641	rs5749426	C	T	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:5,122:0.96:127
chr22	32795751	rs9609527	A	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr22	32796247	rs737779	G	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	32804313	rs5754073	G	A	640.18	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,26:0.90:29
chr22	32804656	rs2076043	G	A	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:6,172:0.97:178
chr22	32811952	rs5998478	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr22	32813176	rs3885439	CTT	C	908.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=25.96;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr22	32831540	rs2076050	C	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	32891355	.	G	GT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.189;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr22	33229685	rs242077	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr22	33229830	rs242076	A	G	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:6,108:0.95:114
chr22	33253280	rs9862	T	C	1929.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=-0.706;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,74:0.97:76
chr22	33832735	rs713740	A	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	34022284	rs86487	G	A	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	35478486	rs2899241	A	C	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr22	35478688	rs725267	C	T	4609.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	35481776	rs3810619	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	35658225	rs4820189	A	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	35660875	rs1053593	G	T	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	35679951	rs2272789	T	C	6610.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr22	35680095	rs2272790	G	A	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	35681893	rs1543303	G	C	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	35683238	rs741995	T	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	35684533	rs5750093	G	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	35695802	rs4461	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	35696077	rs138728	G	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	35726271	.	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.572;QD=1.09;ReadPosRankSum=-0.561;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr22	35727265	.	C	CT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=4.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.769;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr22	35741863	rs133399	A	G	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr22	35742925	rs743810	T	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	35743124	rs2071745	G	C	9566.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr22	35796652	rs743813	C	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	35797333	rs743815	T	C	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	35799542	rs713618	C	T	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	35810052	rs80433	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	35817553	rs2071744	C	T	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	35817597	rs133431	C	A	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	36006923	rs35171458	G	GC	2931.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	36007045	rs7292	G	A	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr22	36007075	rs7293	C	T	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:3,232:0.99:235
chr22	36114047	rs4821438	C	T	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.64;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	36114054	rs2899256	C	T	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	36116493	rs34534260	T	TCTAA	2707.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	36116535	rs33921037	A	G	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	36122930	rs2076671	C	T	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	36124860	rs2076673	C	G	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	36236351	rs139516153	C	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	36424170	rs76819114	C	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	36424450	rs9607299	A	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	36537725	rs61731692	G	A	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:6,184:0.97:190
chr22	36541725	rs1807672	G	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	36545137	rs132642	A	T	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	36545780	rs7290574	C	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	36545826	rs132644	T	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	36556823	rs132653	G	T	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:5,158:0.97:163
chr22	36587202	rs6000172	G	A	2891.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.93;ReadPosRankSum=0.631;SOR=1.149;set=HC	GT:AD:AF:DP	1/1:2,114:0.98:116
chr22	36587223	rs6000173	G	T	3120.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.780;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.67;ReadPosRankSum=-0.570;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:1,116:0.99:117
chr22	36587279	rs6000174	A	G	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	36587486	rs2227167	A	G	7277.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:7,274:0.98:281
chr22	36587511	rs2227168	C	T	7606.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:7,293:0.98:300
chr22	36587845	rs3075364	A	ACT	18976.73	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:10,442:0.98:452
chr22	36587952	rs2227169	C	T	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:10,160:0.94:170
chr22	36591380	rs2007468	A	G	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr22	36597552	rs9610443	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.431;QD=17.59;ReadPosRankSum=-0.431;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr22	36597556	rs132725	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-0.674;QD=12.44;ReadPosRankSum=0.431;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr22	36597564	rs9610444	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-0.674;QD=12.44;ReadPosRankSum=-0.431;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr22	36597611	rs132726	G	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-2.838;QD=5.90;ReadPosRankSum=-0.511;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr22	36597616	rs132727	C	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-2.838;QD=5.90;ReadPosRankSum=-0.703;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr22	36597744	rs9610445	A	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:9,62:0.87:71
chr22	36597877	rs132734	G	A	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:4,96:0.96:100
chr22	36598049	rs80587	C	G	5388.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.855;MLEAC=2;MLEAF=1.000;MQ=59.22;MQRankSum=-0.367;QD=41.77;ReadPosRankSum=-0.856;SOR=0.218;set=HC	GT:AD:AF:DP	1/1:2,127:0.98:129
chr22	36598058	rs132736	T	C	5289.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.826;MLEAC=2;MLEAF=1.000;MQ=59.19;MQRankSum=-0.375;QD=42.66;ReadPosRankSum=0.241;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:2,122:0.98:124
chr22	36598081	rs6000181	A	T	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr22	36598187	rs132737	G	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	36623672	rs144273001	G	A	6637.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:287,306:0.52:593
chr22	36623731	rs132760	T	C	12868.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr22	36624181	.	G	A	1666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=4.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.971;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:83,79:0.49:162
chr22	36627325	rs56411899	C	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	36629466	rs2010499	T	A	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:8,167:0.95:175
chr22	36633564	rs916263	T	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	36633836	rs916264	A	C	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	36634670	rs1894493	G	C	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:3,152:0.98:155
chr22	36635444	rs136144	A	G	830.80	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr22	36650956	rs9610468	G	A	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	36657596	rs713929	A	G	9107.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr22	36657628	rs136163	T	G	9667.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:14,379:0.96:393
chr22	36657789	rs136164	T	C	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr22	36661149	rs136169	A	G	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.67;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	36661152	rs28480494	G	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.67;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	36661330	rs2239785	G	A	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	36661536	rs136174	C	A	8614.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr22	36661566	rs136175	G	A	7679.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	36661646	rs136176	G	A	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr22	36661842	rs136177	G	A	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	36684354	rs2269529	T	C	7237.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.270;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.87;ReadPosRankSum=0.455;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,163:0.99:165
chr22	36684358	rs2269530	C	A	7437.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.26;ReadPosRankSum=0.197;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,174:0.99:176
chr22	36691607	rs710181	A	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	36695173	rs2187776	C	T	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	36695247	rs4821480	G	T	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	36705529	rs1557529	A	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr22	36708049	rs3842715	CTCCTGTGA	C	1068.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	36708084	rs2413396	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	36710045	rs3752461	C	T	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	36712472	rs5756152	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	36722490	rs8136069	C	A	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr22	36722534	rs8136336	G	A	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	36744886	rs56147525	GC	G	756.74	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:3,33:0.92:36
chr22	36872750	rs2281082	T	G	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	36891786	rs5756218	G	C	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:6,246:0.98:252
chr22	36891858	rs5756219	C	A	7989.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:8,303:0.97:311
chr22	36900271	rs2277841	T	C	6358.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr22	36900806	rs760718	A	G	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	36907098	rs728785	T	C	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr22	36919375	rs73169675	G	C	5945.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.03;ReadPosRankSum=-1.344;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,218:0.99:220
chr22	37196871	rs3484	G	A	1760.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=-0.796;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:2,69:0.97:71
chr22	37196971	rs2001063	C	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	37207319	rs72164769	CTAAA	C	437.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	37207667	rs34262500	T	A	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	37333794	rs131840	A	G	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	37453259	rs710184	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	37453452	rs710185	C	T	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	37462926	rs2235321	G	A	9330.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.437;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.57;ReadPosRankSum=0.421;SOR=0.550;set=HC	GT:AD:AF:DP	1/1:7,223:0.97:230
chr22	37462936	rs855791	A	G	9572.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.39;ReadPosRankSum=-0.250;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:8,229:0.97:237
chr22	37464624	rs877908	T	C	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	37465385	rs200434923	CTGGGG	C	481.87	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:1,14:0.93:15
chr22	37467270	rs5756504	C	T	399.78	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr22	37469386	.	AGATGGATGGATG	AGATG,A	2069.76	.	AC=1,0;AF=0.500,0.00;AN=2;DP=68;set=Intersection	GT:AF:DP	0/1:0.96:53
chr22	37469591	rs4820268	G	A	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:4,180:0.98:184
chr22	37470536	rs2076086	C	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	37470604	rs2072860	G	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:3,79:0.96:82
chr22	37471385	rs9610643	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	37480797	rs2111833	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	37481041	rs2179229	G	C	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:10,177:0.95:187
chr22	37485595	rs2235326	T	C	968.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.636;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.63;ReadPosRankSum=-0.967;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr22	37485724	rs2235324	T	C	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:6,125:0.95:131
chr22	37491545	rs2743824	T	C	5437.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.810;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.507;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=-0.302;SOR=0.598;set=HC	GT:AD:AF:DP	1/1:1,212:1.00:213
chr22	37491669	rs71682507	C	CA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.606;QD=1.70;ReadPosRankSum=3.508;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr22	37491839	rs2543509	A	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr22	37492201	rs2743825	T	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	37492585	rs5756512	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	37499692	rs5756515	A	G	2973.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.364;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.30;ReadPosRankSum=2.518;SOR=2.173;set=HC	GT:AD:AF:DP	1/1:2,70:0.97:72
chr22	37499699	rs5756516	C	T	2973.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.73;ReadPosRankSum=1.680;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:1,67:0.99:68
chr22	37524059	.	C	G	1686.77	.	AC=2;AF=1.00;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr22	37531257	rs3830742	A	AGT	1413.14	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:6,44:0.88:50
chr22	37531436	rs228953	G	A	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr22	37532506	rs34577916	A	ACC	354.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.25;ReadPosRankSum=-0.404;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr22	37533786	rs228957	C	G	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.50;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	37533795	rs228958	G	C	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	37535328	rs2281093	C	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr22	37580442	rs11089827	A	T	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:5,132:0.96:137
chr22	37581422	rs229526	G	C	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr22	37581485	rs229527	C	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	37602583	rs11406761	G	GC	7854.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr22	37622999	rs62235085	C	T	501.78	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr22	37678551	rs3213556	A	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	37691907	rs2269590	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr22	37695256	rs2301435	T	C	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr22	37699377	rs2239822	T	C	12704.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:15,496:0.97:511
chr22	37699516	.	G	T	744.77	.	AC=1;AF=0.500;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	0/1:113,42:0.27:155
chr22	37700177	rs2284050	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr22	37707630	rs146276237	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr22	37707962	rs2269591	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	37708004	rs2269593	T	C	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	37888868	rs5756696	G	C	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	37898744	rs140056	G	A	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr22	38037105	rs71723818	TC	T	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=5.29;ReadPosRankSum=0.656;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr22	38161835	rs3833924	T	TG	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.406;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr22	38259110	rs61195610	CT	C	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.306;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:53,48:0.48:101
chr22	38273749	rs9466	T	C	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr22	38307909	rs6519091	T	C	8095.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.681;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.61;ReadPosRankSum=-1.216;SOR=0.510;set=HC	GT:AD:AF:DP	1/1:5,324:0.98:329
chr22	38308048	.	ATGTGTG	A,ATG	4616.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=170;set=Intersection	GT:AF:DP	1/2:0.17,0.80:129
chr22	38308291	rs1003689	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	38313552	rs9607500	G	A	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr22	38323507	rs9610875	G	T	6768.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:6,242:0.98:248
chr22	38453679	rs5845366	A	AG	1848.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	38481516	rs9610902	G	A	216.22	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr22	38482352	rs66500630	GTGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	G	938.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr22	38483155	rs142739979	T	TTCATGGGTG	2980.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	38485064	rs62235125	C	G	1537.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.29;ReadPosRankSum=-0.520;SOR=0.492;set=HC	GT:AD:AF:DP	1/1:5,64:0.93:69
chr22	38485540	rs17856487	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	38490056	rs4373009	C	T	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr22	38494005	rs147676763	CGGTCTCGCCCCGA	C	1113.25	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr22	38503847	rs6001006	C	T	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr22	38504372	rs5750540	T	C	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr22	38506509	rs4820313	A	G	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	38512355	rs55679135	C	T	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:7,242:0.97:249
chr22	38541791	.	A	AAC	183.75	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	38543545	.	C	CTTTT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.730;QD=2.36;ReadPosRankSum=0.763;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr22	38609947	rs372577633	G	A	1001.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.04;ReadPosRankSum=-0.984;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:2,38:0.95:40
chr22	38609950	rs2235264	G	A	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=5.943;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	38611080	rs9610915	C	G	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	38689984	rs5757022	T	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	38699050	rs3830720	GAGGC	G	8856.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	38875549	rs401933	C	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	38877461	rs12004	T	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:5,108:0.96:113
chr22	38889657	rs2267390	C	T	3308.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.776;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=0.083;SOR=0.648;set=HC	GT:AD:AF:DP	1/1:5,132:0.96:137
chr22	38895521	rs3833951	AAAG	A	7238.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr22	38917543	rs372004941	TACAC	T,TAC	405.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=1.622;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:1,6,9:0.38,0.56:16
chr22	38982321	rs5750627	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	38993370	rs5757162	C	T	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr22	39003495	rs5757169	G	A	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:8,146:0.95:154
chr22	39016182	rs4821797	T	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	39024961	rs5995602	G	T	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	39034867	rs5757193	G	A	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:3,129:0.98:132
chr22	39045885	rs5750651	G	A	46.10	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=11.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	39064209	rs2072795	G	A	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	39064230	rs2072796	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	39066820	rs3761454	C	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	39069181	rs3747174	T	C	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	39079148	.	G	GGGGC	51	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.7837;HP=9;HapScore=2;MGOF=54;MMLQ=24;MQ=60.0;NF=1;NR=0;PP=51;QD=63.0;SC=GCCGGGGGTCGGGGGGGGGGT;SbPval=1.0;Source=Platypus;TC=2;TCF=1;TCR=1;TR=1;WE=39079156;WS=39079138;set=Platypus	GT:AD:AF:DP	1/0:1,1:0.50:2
chr22	39079151	rs59060602	G	GC	41.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr22	39079964	rs5750668	T	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	39126508	rs909564	A	G	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:7,259:0.97:266
chr22	39134207	rs2072797	C	T	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr22	39134715	rs1062687	T	C	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	39141600	rs138712	G	A	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:4,128:0.97:132
chr22	39147235	rs35496634	A	C	5573.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.02;ReadPosRankSum=-1.237;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:8,224:0.97:232
chr22	39148483	rs2072798	G	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr22	39150543	rs2072794	G	T	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	39151057	rs470107	CG	C	833.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr22	39178701	rs760482	A	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr22	39222652	rs5757299	G	A	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:3,130:0.98:133
chr22	39224248	rs5757300	T	C	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:6,243:0.98:249
chr22	39239172	rs3747176	C	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	39267312	rs1122771	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	39382079	rs5995649	C	A	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	39414166	rs4820361	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	39414224	rs4821854	A	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	39414240	rs9306332	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	39497509	rs139300	A	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	39498373	rs139304	TA	T	318.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;MQ=60.98;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	39626024	rs2239769	C	T	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	39626375	rs4821874	A	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	39629329	rs11704525	C	A	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	39636899	rs150503603	G	GTCTC,GTC	916.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=40;set=Intersection	GT:AF:DP	0/1:0.83:30
chr22	39636928	rs5757575	A	G	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	39636928	.	ACA	GCG	383	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=2;MGOF=36;MMLQ=24;MQ=60.0;NF=7;NR=15;PP=383;QD=19.8394488574;SC=TCAGATGCGCACACACACACA;SbPval=0.53;Source=Platypus;TC=23;TCF=7;TCR=16;TR=22;WE=39636955;WS=39636918;set=Platypus	GT:AD:AF:DP	1/1:1,22:0.96:23
chr22	39636930	rs5757576	A	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	39636944	rs138673005	ACACT	A	447.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	39639853	rs1800817	G	T	4069.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=-0.612;SOR=0.377;set=HC	GT:AD:AF:DP	1/1:1,158:0.99:159
chr22	39709776	rs137620	T	C	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:5,252:0.98:257
chr22	39710244	rs137621	G	A	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr22	39712981	rs137623	A	G	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	39713105	rs470081	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	39714490	rs6509	C	T	7539.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:5,279:0.98:284
chr22	39714908	rs137625	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	39715140	rs470082	C	T	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:3,97:0.97:100
chr22	39746186	rs142884306	ACCGACC	A	1630.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	39770597	rs4821888	A	G	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:11,249:0.96:260
chr22	39770780	rs4820377	G	A	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	39777680	rs8135738	C	T	8013.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:9,300:0.97:309
chr22	39777822	rs149306472	C	CCAA	19382.73	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:13,446:0.97:459
chr22	39795683	rs4821892	G	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	39812986	rs6001585	C	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	39882149	rs34708754	AT	A	159.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.65;ReadPosRankSum=0.674;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr22	39969767	rs5750851	T	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	39969895	rs12484689	C	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	39994105	rs760546	A	G	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	40075733	rs56656729	C	A	4889.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.864;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.21;ReadPosRankSum=-0.090;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:5,197:0.98:202
chr22	40161181	.	TTG	T	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=10.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.173;SOR=2.658;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr22	40364394	rs138009	C	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	40545595	rs6001804	A	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	40545797	rs34190441	T	TA	362.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	40545998	rs35899845	C	CA	801.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr22	40546041	rs35629137	C	CA	1134.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr22	40546153	rs5995826	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr22	40574170	rs6001827	T	A	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:4,146:0.97:150
chr22	40697176	rs10617561	TGCA	T	3331.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	40746150	rs186758682	T	C	528.79	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr22	40754826	rs3830737	GTCTC	G	4729.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:3,110:0.97:113
chr22	40759233	rs2068470	T	C	616.88	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr22	40800518	rs760701	G	A	7184.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:5,279:0.98:284
chr22	40800544	rs2235318	C	T	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:5,264:0.98:269
chr22	40801986	rs9607716	C	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:3,60:0.95:63
chr22	40802739	rs143734853	G	A	2157.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.52;ReadPosRankSum=2.326;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:2,86:0.98:88
chr22	40803186	rs2018393	G	T	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:4,142:0.97:146
chr22	40803367	rs77222252	C	T	7722.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.904;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=-0.081;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:6,293:0.98:299
chr22	40814500	rs878756	T	C	3455.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=21.60;ReadPosRankSum=0.828;SOR=0.563;set=HC	GT:AD:AF:DP	1/1:3,157:0.98:160
chr22	40814636	rs4821944	C	T	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chr22	40816749	rs2072856	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	41172351	rs6002128	A	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	41194909	rs138306	C	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr22	41194947	rs113368977	CA	C	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.403;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:96,47:0.33:143
chr22	41195191	rs113851841	A	AGTGGCATGGTT	1335.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr22	41210063	rs138323	T	A	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	41215418	rs200414768	G	GGGGT	386.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	41227086	rs138335	C	G	643.98	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr22	41256802	rs103197	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	41310148	rs35631136	G	GA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.230;QD=2.40;ReadPosRankSum=0.267;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr22	41460489	rs9611487	C	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	41513094	rs2144342	G	T	495.81	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr22	41532025	rs35531014	A	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr22	41537234	rs6002267	G	T	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	41543741	.	C	CA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.980;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr22	41545024	rs71761046	G	GT	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.335;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:111,35:0.24:146
chr22	41548008	rs20551	A	G	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr22	41550954	rs4822011	C	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr22	41551039	rs20552	T	A	9174.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:6,349:0.98:355
chr22	41551231	.	AT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-0.150;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr22	41566595	rs6002271	C	T	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:4,74:0.95:78
chr22	41568480	rs2076577	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	41572542	rs78432056	G	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:4,65:0.94:69
chr22	41574969	rs35508493	TGTA	T	4452.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	41604399	rs4820432	G	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	41613188	rs9611519	C	T	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr22	41613303	rs9611520	C	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	41615376	rs2273085	C	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	41617160	rs139471	T	TG	2091.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	41617318	rs139472	G	C	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	41621714	rs2179744	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr22	41645500	rs139500	TG	T	5184.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	41645757	rs71948	C	G	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	41650189	.	T	TA	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=0.201;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:94,17:0.15:111
chr22	41650190	rs7364221	C	A	3240.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:3,110:0.97:113
chr22	41652846	rs4820435	G	T	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	41657626	rs2235850	C	T	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:3,85:0.97:88
chr22	41660964	rs139520	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	41726053	rs4822021	G	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:10,133:0.93:143
chr22	41736267	rs5751080	A	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	41739370	rs1883828	T	C	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr22	41744022	rs761366	C	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr22	41745355	rs2281331	A	G	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	41747717	rs3817999	G	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	41752747	rs12484074	G	A	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:3,191:0.98:194
chr22	41779073	rs3788584	T	A	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	41783659	rs11546403	C	T	6133.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:7,232:0.97:239
chr22	41903743	rs2076199	G	T	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	41903813	rs137831	A	C	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	41913477	rs203320	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	41914593	rs203319	C	T	1735.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=-0.536;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,67:0.99:68
chr22	41916427	rs143076023	C	T	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:4,72:0.95:76
chr22	41919330	rs12484694	A	G	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:5,215:0.98:220
chr22	41925535	rs4822032	T	C	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:5,100:0.95:105
chr22	41925767	rs59340256	G	GT,GTT	484.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.000;QD=13.10;ReadPosRankSum=2.640;SOR=1.150;set=HC	GT:AD:AF:DP	1/2:8,15,14:0.41,0.38:37
chr22	41939739	rs12484228	A	G	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	42177453	rs4822050	G	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	42177899	rs45500192	A	G	1333.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.70;ReadPosRankSum=-0.880;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,52:0.96:54
chr22	42189810	.	A	ATT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.687;QD=1.70;ReadPosRankSum=0.306;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr22	42191636	rs139559	A	G	8833.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:7,318:0.98:325
chr22	42195410	rs139561	T	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	42206084	rs4512	G	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	42209922	rs9611672	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr22	42341451	.	A	AT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.70;ReadPosRankSum=-0.313;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr22	42354487	rs376900632	GGA	G	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.532;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr22	42377878	rs2269665	G	A	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	42381892	rs56177503	G	A	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr22	42388841	rs133299	G	A	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	42390093	rs133301	C	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr22	42390887	rs370320875	CTGTG	C,CTG	1266.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.590;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.39;ReadPosRankSum=-0.237;SOR=1.751;set=HC	GT:AD:AF:DP	1/2:3,15,30:0.31,0.62:48
chr22	42415224	.	CA	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.716;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr22	42416056	rs133335	A	G	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:6,188:0.97:194
chr22	42418185	rs133341	T	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	42423110	rs2301521	G	C	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr22	42428727	rs133349	A	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	42463366	rs133367	C	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	42463689	rs133368	T	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	42463814	rs133369	C	T	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	42473603	rs133383	C	T	8666.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:3,320:0.99:323
chr22	42522613	rs1135840	G	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=26.80;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	42523003	rs116917064	A	G	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=25.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	42523409	rs1985842	G	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr22	42523505	rs150552908	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=10.069;MLEAC=1;MLEAF=0.500;MQ=56.72;MQRankSum=-10.323;QD=2.07;ReadPosRankSum=-1.751;SOR=1.498;set=HC	GT:AD:AF:DP	0/1:185,27:0.13:212
chr22	42523514	rs61745683	C	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.996;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=27.213;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-9.225;QD=1.36;ReadPosRankSum=-0.330;SOR=3.051;set=HC	GT:AD:AF:DP	0/1:179,20:0.10:199
chr22	42523943	rs16947	A	G	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	42524708	rs111564371	T	C	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.664;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-2.429;QD=15.07;ReadPosRankSum=0.826;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr22	42524713	rs112568578	C	G	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.170;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-2.363;QD=14.63;ReadPosRankSum=0.603;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr22	42524743	rs113889384	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr22	42524795	.	A	G	1449.77	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:75,67:0.47:142
chr22	42524924	rs111606937	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.340;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=26.837;MLEAC=1;MLEAF=0.500;MQ=49.65;MQRankSum=-4.562;QD=2.27;ReadPosRankSum=-0.381;SOR=4.840;set=HC	GT:AD:AF:DP	0/1:56,11:0.16:67
chr22	42525132	rs1058164	G	C	7186.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.831;MLEAC=2;MLEAF=1.000;MQ=58.28;MQRankSum=-1.025;QD=26.13;ReadPosRankSum=1.987;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:5,270:0.98:275
chr22	42525625	rs1081004	C	T	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:3,138:0.98:141
chr22	42525952	rs71328650	C	A	329.22	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.337;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.24;MQRankSum=0.637;QD=25.32;ReadPosRankSum=1.308;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr22	42526484	rs28371699	A	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	42526549	rs56011157	C	T	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	42526561	rs28695233	GG	TC	1510.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=58.00;MQRankSum=-1.307;QD=26.05;ReadPosRankSum=0.746;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:2,56:0.97:58
chr22	42526567	rs76312385	G	A	1612.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.06;MQRankSum=-1.272;QD=26.88;ReadPosRankSum=0.453;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr22	42526571	rs74644586	C	G	1695.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.16;MQRankSum=-1.209;QD=26.50;ReadPosRankSum=0.116;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:2,62:0.97:64
chr22	42526573	rs1080996	T	G	1695.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.16;MQRankSum=-1.209;QD=26.50;ReadPosRankSum=0.135;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:2,62:0.97:64
chr22	42526580	rs1080995	G	C	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.28;QD=40.75;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	42536211	rs2092118	G	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	42537115	rs28733092	C	T	370.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.53;QD=46.35;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	42537119	rs55861500	C	CA	394.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.11;QD=43.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	42537127	rs3020736	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.35;QD=37.74;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	42537196	rs56404506	T	C	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	42537404	rs2854741	G	C	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	42537597	rs1800754	A	G	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:4,189:0.98:193
chr22	42538029	rs1058167	A	G	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr22	42538103	rs3021083	T	C	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:8,100:0.93:108
chr22	42538508	rs3021082	A	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.35;MQRankSum=3.068;QD=19.04;ReadPosRankSum=0.780;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr22	42538509	rs56023519	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.35;MQRankSum=3.068;QD=19.04;ReadPosRankSum=0.780;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr22	42538514	.	T	TC	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.84;MQRankSum=3.215;QD=17.64;ReadPosRankSum=-0.114;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr22	42538618	rs2267448	A	G	1141.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=15.233;MLEAC=2;MLEAF=1.000;MQ=49.68;MQRankSum=-0.636;QD=24.82;ReadPosRankSum=0.573;SOR=1.812;set=HC	GT:AD:AF:DP	1/1:3,43:0.93:46
chr22	42538669	rs2856955	C	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:3,42:0.93:45
chr22	42538704	rs2743459	G	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr22	42538876	rs3020732	A	T	10432.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr22	42538897	rs2854740	A	G	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:12,236:0.95:248
chr22	42539623	rs769261	C	A	145.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.10;MQRankSum=-0.000;QD=20.85;ReadPosRankSum=-0.000;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr22	42540551	rs2743461	A	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr22	42781071	rs12484478	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	42896553	rs71311440	TGGGGC	T	1399.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	42905177	rs1056566	T	C	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr22	42908903	rs62239687	C	A	816.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=0.987;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:6,39:0.87:45
chr22	42910376	rs9611811	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr22	42911257	rs1137212	A	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=8.102;MLEAC=1;MLEAF=0.500;MQ=42.86;MQRankSum=-3.392;QD=16.09;ReadPosRankSum=0.310;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr22	42912029	rs3201001	G	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr22	42912501	rs5751292	A	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	43026792	rs5758820	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr22	43027356	rs743889	G	A	7544.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=1.685;SOR=0.467;set=HC	GT:AD:AF:DP	1/1:5,286:0.98:291
chr22	43035849	rs59947151	CTT	C	929.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;QD=28.17;SOR=4.003;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr22	43036356	.	CTTAT	C	347	.	AC=2;AF=1.00;AN=2;BRF=0.04;FR=1.0000;HP=2;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=0;NR=8;PP=347;QD=44.0;SC=GCGTGGTTCACTTATTTATTT;SbPval=1.0;Source=Platypus;TC=29;TCF=0;TCR=29;TR=8;WE=43036367;WS=43036346;set=Platypus	GT:AD:AF:DP	1/1:21,8:0.28:29
chr22	43088549	rs3747194	C	T	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr22	43435668	rs2072883	G	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	43442599	rs5759111	T	C	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	43455531	rs1132079	C	T	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	43455665	rs5759126	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	43459846	rs1052160	G	A	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	43520258	rs4988417	A	C	1063.88	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.40;ReadPosRankSum=-0.667;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr22	43520263	rs2076079	A	G	1030.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.65;ReadPosRankSum=-0.388;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr22	43523537	.	G	C	270.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr22	43523921	rs4988434	A	ACT	1920.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr22	43524487	rs4988438	CCT	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr22	43529029	rs7402	C	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	43529314	rs13815	G	C	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:11,288:0.96:299
chr22	43529517	rs2066910	C	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr22	43538780	rs151166687	C	CAA	635.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.105;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=6.422;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-0.183;QD=26.49;ReadPosRankSum=-1.338;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr22	43558926	rs6971	A	G	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	43564963	rs138931	C	G	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	43565443	rs138932	C	T	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:3,102:0.97:105
chr22	43565855	rs138933	C	T	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr22	43569608	rs138938	C	A	1295.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.45;ReadPosRankSum=2.015;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr22	43572420	rs9612019	G	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:5,132:0.96:137
chr22	43575616	rs4822261	G	A	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	43575774	rs138945	A	C	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	43576904	rs2071723	G	A	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	43583184	.	GCGC	G	579	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=1;HapScore=1;MGOF=63;MMLQ=27;MQ=54.12;NF=0;NR=9;PP=579;QD=68.2222222222;SC=CCTCCTCCCAGCGCCCCCCCC;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=9;WE=43583194;WS=43583174;set=Platypus	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	43606143	rs5759217	C	T	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	43610207	rs138993	A	G	6597.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	43618632	rs139005	CG	C	1784.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;MQ=60.35;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	43619200	rs6003114	G	A	3505.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.262;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=2.093;SOR=0.430;set=HC	GT:AD:AF:DP	1/1:1,141:0.99:142
chr22	43619404	rs6003115	C	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	43623353	rs129414	G	A	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:4,86:0.96:90
chr22	43623395	rs129415	C	G	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	43625225	rs34045808	G	T	1839.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.229;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.28;ReadPosRankSum=1.388;SOR=1.778;set=HC	GT:AD:AF:DP	1/1:1,69:0.99:70
chr22	43814244	rs5759334	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	43930825	rs4585129	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr22	43936219	rs61995890	C	T	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:4,217:0.98:221
chr22	44079645	rs8141450	T	C	1525.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.22;ReadPosRankSum=-0.563;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr22	44083327	rs35384776	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.62;ReadPosRankSum=-0.501;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr22	44083442	rs5764214	T	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	44112845	rs5764234	C	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	44223635	rs71313366	C	CCACA,CCACACA	546.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=42.06;SOR=2.147;set=HC	GT:AD:AF:DP	1/2:0,4,9:0.31,0.69:13
chr22	44229492	rs138069	G	C	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	44229508	rs138070	G	A	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	44234933	rs138073	C	T	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	44236039	rs9625949	G	A	140.81	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.12;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	44258003	rs189562377	A	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	44258014	rs181826322	C	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	44323074	rs139047	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:5,77:0.94:82
chr22	44341986	rs2294917	T	C	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:3,117:0.97:120
chr22	44342116	rs2294918	A	G	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr22	44342325	rs2294919	C	T	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:4,88:0.96:92
chr22	44364594	rs5764434	C	T	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	44364794	rs2273031	T	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	44368204	rs3177036	A	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	44368728	.	A	AT	660	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=13;HapScore=1;MGOF=6;MMLQ=22;MQ=59.67;NF=13;NR=13;PP=660;QD=25.6153846154;SC=GACCACTGCTATTTTTTTTTT;SbPval=0.48;Source=Platypus;TC=91;TCF=48;TCR=43;TR=26;WE=44368749;WS=44368718;set=Platypus	GT:AD:AF:DP	1/1:65,26:0.29:91
chr22	44368740	rs71188424	TC	T	60.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.218;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:115,25:0.18:140
chr22	44368741	rs932430	C	T	2334.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-0.741;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:30,111:0.79:141
chr22	44379822	rs10452	T	C	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr22	44379838	rs8418	A	G	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr22	44386281	rs7587	C	T	7128.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:11,275:0.96:286
chr22	44420156	rs112388263	T	A	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	44489868	rs1983609	T	C	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	44489896	rs738479	T	C	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	44514809	rs5764541	C	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	44515806	rs761166	G	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	44527227	rs2281269	T	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	44535904	rs11270419	G	GCTTTCTGGCTGGCTCTGTCCCTCATCCTCCA	955.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	44559715	rs56412646	GA	G	8513.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,216:0.99:218
chr22	44559995	rs2272940	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr22	44564297	rs139095	A	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	44582499	rs79478	T	C	11312.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr22	44586522	rs2272942	C	T	7673.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.519;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=1.124;SOR=0.417;set=HC	GT:AD:AF:DP	1/1:7,293:0.98:300
chr22	44594476	rs139151	T	C	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr22	44594584	rs139152	C	G	8626.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr22	44602001	rs139185	G	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	44602229	rs139186	A	C	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr22	44645332	rs9614402	G	A	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	44681612	rs135388	A	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	44696721	rs113050020	C	T	2124.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.60;ReadPosRankSum=-0.677;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:1,93:0.99:94
chr22	44893563	rs5765689	A	G	555.78	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr22	44965320	rs138593	G	A	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	44967767	rs138596	C	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	45075738	rs763213	T	C	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	45126775	rs3761485	T	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr22	45204520	.	A	AT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.99;ReadPosRankSum=-1.632;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr22	45218223	rs136662	C	T	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	45221423	rs3209476	A	T	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:5,146:0.97:151
chr22	45279320	rs3747224	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	45309653	rs3213527	C	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	45316507	rs4823420	T	A	1286.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	45577372	rs372438307	TCAAG	T	1517.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.16;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	45577377	rs376698610	TGGAACAGGAAAGAATTCTTGGCCAGTTTATTTAA	T	1513.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.05;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	45577411	.	A	T	279	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=4;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=4;NR=10;PP=279;QD=22.4122294677;SC=AGTTTATTTAAAAATCCAGTT;SbPval=0.47;Source=Platypus;TC=16;TCF=4;TCR=12;TR=14;WE=45577419;WS=45577362;set=Platypus	GT:AD:AF:DP	1/1:2,14:0.88:16
chr22	45579422	rs6006950	A	G	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:4,82:0.95:86
chr22	45593661	rs55790105	C	T	8325.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:3,318:0.99:321
chr22	45595721	rs5765217	A	G	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	45603485	rs11705584	G	A	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	45603501	rs11703294	A	G	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	45603545	rs11705041	C	T	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr22	45603638	rs11703323	A	G	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:4,160:0.98:164
chr22	45622014	rs6007506	C	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr22	45636669	.	C	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.92;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr22	45680824	rs2255432	A	G	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	45682975	rs2673087	A	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	45683246	rs2673088	C	T	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	45683304	rs1057353	G	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	45691594	rs1057356	A	G	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	45718041	rs1473953	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr22	45718922	rs34063912	C	CTGTGTG,CTGTGTGTG	1290.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;set=Intersection	GT:AF:DP	1/2:0.37,0.57:35
chr22	45723696	rs6007591	G	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr22	45723807	rs11556482	G	C	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:5,141:0.97:146
chr22	45723842	rs17851057	G	A	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:8,150:0.95:158
chr22	45723947	.	A	G	934	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.6010;HP=2;HapScore=1;MGOF=23;MMLQ=28;MQ=56.87;NF=5;NR=20;PP=934;QD=38.7508485019;SC=AGACCAAGGTATGGGCTGGGG;SbPval=0.5;Source=Platypus;TC=27;TCF=5;TCR=22;TR=25;WE=45723966;WS=45723937;set=Platypus	GT:AD:AF:DP	0/1:2,25:0.93:27
chr22	45723958	.	G	C	859	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.6010;HP=4;HapScore=1;MGOF=23;MMLQ=24;MQ=56.4;NF=3;NR=17;PP=859;QD=44.6885606274;SC=TGGGCTGGGGGTGCGGGAGGC;SbPval=0.52;Source=Platypus;TC=22;TCF=3;TCR=19;TR=20;WE=45723966;WS=45723937;set=Platypus	GT:AD:AF:DP	0/1:2,20:0.91:22
chr22	45724208	rs374842461	G	T	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	45726345	rs7285172	A	G	828.41	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:3,27:0.90:30
chr22	45728370	rs6007594	G	A	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:3,93:0.97:96
chr22	45728632	rs111420586	C	CTT	621.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=20.72;ReadPosRankSum=1.969;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,27:0.90:30
chr22	45736153	rs3827393	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	45736434	rs1056322	C	G	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr22	45748284	rs11375006	C	CT	2960.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	45757987	rs5764704	C	T	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr22	45767421	rs56174639	C	T	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr22	45767455	rs136569	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	45767599	rs136570	G	A	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	45767946	rs136572	G	A	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	45779335	rs136585	A	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	45779553	rs11090629	C	T	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	45782646	rs136591	C	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	45782903	rs6007010	T	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:5,164:0.97:169
chr22	45785840	rs8138001	A	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,49:0.94:52
chr22	45789642	rs136603	A	C	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	45794925	rs79154	C	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	45809624	rs2272804	C	A	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	45810278	rs59404993	A	AC	7080.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr22	45813433	rs11320557	AT	A	1344.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	45813886	rs67045505	GT	G	427.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.52;ReadPosRankSum=-1.366;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,13:0.93:14
chr22	45813890	rs199513388	T	G	436.28	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:1,13:0.93:14
chr22	45813915	.	G	GT	258.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=32.34;ReadPosRankSum=-0.489;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr22	45821887	rs1022477	G	A	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	45821956	rs1022478	C	G	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	45822161	rs5765345	C	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	45826880	rs2072770	G	A	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	45827020	rs5765352	G	A	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	45828091	.	CAA	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.35;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr22	45913394	rs5765441	G	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr22	45918877	rs2018279	A	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	45921359	rs1107180	G	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	45923827	rs136730	A	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	45924001	rs136731	T	TG	214.75	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	45927045	rs6006767	T	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	45927112	rs2239844	A	G	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	45927220	rs6006768	C	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr22	45929200	rs11702924	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	45929577	rs105199	T	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	45931262	rs2071938	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	45954029	rs2097484	G	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	45958694	rs743930	C	T	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	45961213	rs1118	C	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	45961904	rs1985671	G	T	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	46114244	rs2071852	C	T	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr22	46114398	rs138156	G	T	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:5,227:0.98:232
chr22	46134650	.	G	A	5535.77	.	AC=2;AF=1.00;AN=2;DP=215;set=Intersection	GT:AD:AF:DP	1/1:4,209:0.98:213
chr22	46156446	rs60308683	G	A	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr22	46156572	rs59406530	A	T	1445.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.26;ReadPosRankSum=-1.118;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr22	46156581	rs60514881	C	T	1208.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.99;ReadPosRankSum=-0.987;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:2,29:0.94:31
chr22	46156622	rs58099513	C	A	410.41	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr22	46202925	rs3827398	A	G	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr22	46368130	rs62226057	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	46402714	rs28477160	A	G	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:5,210:0.98:215
chr22	46447795	rs141796966	T	TA	144.25	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr22	46449891	rs12159707	G	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	46505986	rs2474020	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	46594555	.	C	CT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=4.706;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.962;QD=6.42;ReadPosRankSum=-0.499;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr22	46652959	rs4508712	A	G	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:4,190:0.98:194
chr22	46664985	.	G	GC	593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=0.283;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:12,29:0.71:41
chr22	46677607	rs130642	T	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	46685514	rs56336637	G	A	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	46722400	rs140054	T	C	8301.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr22	46724558	rs140053	T	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	46731791	rs2272937	G	A	12791.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:12,485:0.98:497
chr22	46739096	.	C	CT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.614;QD=2.26;ReadPosRankSum=-0.681;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr22	46752080	rs8135519	G	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr22	46760086	rs35364389	C	T	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:4,139:0.97:143
chr22	46760481	rs9615351	C	G	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr22	46760648	rs9626857	C	T	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:6,127:0.95:133
chr22	46760703	rs9627423	G	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:4,72:0.95:76
chr22	46761497	rs12165943	C	G	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr22	46761723	.	TGTGGGGGAAAGGTGGTGGGGGGAAAGGTTGGGTGGGGGGAAGGTGGTGGGTGGAAAGGTTGG	T	593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.730;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.830;QD=16.96;ReadPosRankSum=-3.611;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr22	46761730	.	GA	G	1314	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=4;HapScore=1;MGOF=22;MMLQ=28;MQ=59.03;NF=0;NR=13;PP=1314;QD=103.615384615;SC=GTATGTGGGGGAAAGGTGGTG;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=13;WE=46761738;WS=46761720;set=Platypus	GT:AD:AF:DP	1/1:2,13:0.87:15
chr22	46761756	.	TG	T	562	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=9;HapScore=1;MGOF=36;MMLQ=22;MQ=56.29;NF=0;NR=3;PP=562;QD=196.0;SC=AAAGGTTGGGTGGGGGGAAGG;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=46761764;WS=46761746;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	46762092	.	A	G	56.28	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	46762214	rs73889254	T	G	1594.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.260;QD=26.58;ReadPosRankSum=-0.455;SOR=0.237;set=HC	GT:AD:AF:DP	1/1:1,59:0.98:60
chr22	46762461	rs34100600	G	GC	1154.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	46763094	rs11912939	C	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr22	46763490	rs7285194	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	46763502	rs11913988	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr22	46763671	rs7285515	A	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:3,100:0.97:103
chr22	46765181	rs11273699	G	GTCAGGTCGCCGAC	3965.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chr22	46858687	rs5768788	G	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	46859003	rs3788696	G	C	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	46929359	rs5767248	C	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	46929692	rs4823561	A	G	7269.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr22	46930107	rs8141744	C	T	8578.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:8,310:0.97:318
chr22	46931077	rs4823850	G	C	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	46931793	rs1009154	G	C	6525.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr22	46931838	rs1009155	G	A	8629.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr22	47058992	rs2542040	T	C	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	47083010	rs2542014	T	C	9120.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.71;ReadPosRankSum=0.909;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:3,201:0.99:204
chr22	47083010	.	TGT	CGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=21;MQ=60.0;NF=111;NR=64;PP=2947;QD=20;SC=TTTCCCAGTTTGTGAGCAGGA;SbPval=0.46;Source=Platypus;TC=182;TCF=117;TCR=65;TR=175;WE=47083020;WS=47083000;set=Platypus	GT:AD:AF:DP	1/1:7,175:0.96:182
chr22	47083012	rs2748349	T	A	9120.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.23;ReadPosRankSum=0.562;SOR=0.655;set=HC	GT:AD:AF:DP	1/1:3,213:0.99:216
chr22	47083172	.	CTGGACAGGGGCTGCAGTAAACCCCACGTGTCCCTCACTCAAAGCTGGCCCTGAGCACCGCTCT	C	1531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=6.628;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.243;QD=22.20;ReadPosRankSum=0.947;SOR=2.617;set=HC	GT:AD:AF:DP	1/1:1,68:0.99:69
chr22	47083219	.	GC	G	814	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=3;HapScore=1;MGOF=0;MMLQ=28;MQ=57.95;NF=1;NR=20;PP=814;QD=41.0967095176;SC=CTCAAAGCTGGCCCTGAGCAC;SbPval=0.63;Source=Platypus;TC=21;TCF=1;TCR=20;TR=21;WE=47083243;WS=47083209;set=Platypus	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	47087347	rs7285435	A	G	394.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=-0.554;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr22	47087670	rs36211083	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr22	47091342	rs9616099	G	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	47097505	rs16995595	C	T	972.88	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr22	47134147	rs3747262	G	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.75;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	47185265	rs801606	G	T	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:4,124:0.97:128
chr22	47307814	rs11377607	C	CA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.629;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr22	47370060	rs4436	A	G	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	47370343	rs4437	G	A	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	47393400	rs3747263	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	47857537	rs130877	T	C	4777.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.28;ReadPosRankSum=2.374;SOR=0.627;set=HC	GT:AD:AF:DP	1/1:5,108:0.96:113
chr22	47857551	rs130878	T	G	5220.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.990;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.43;ReadPosRankSum=2.081;SOR=0.684;set=HC	GT:AD:AF:DP	1/1:5,121:0.96:126
chr22	47857576	rs130879	A	G	5146.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.99;ReadPosRankSum=0.432;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:4,128:0.97:132
chr22	47857645	.	G	GT	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.613;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:33,21:0.39:54
chr22	47857658	rs130880	A	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-0.645;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:12,42:0.78:54
chr22	48023241	rs8137874	G	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:4,91:0.96:95
chr22	48940553	rs4823540	T	C	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	48940644	rs9615919	C	T	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	48942566	rs739155	G	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	49103380	rs130147	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	49103660	rs132234	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	49176220	rs6010527	C	T	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	49668188	rs2688112	T	C	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	50014002	rs135877	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr22	50017234	rs916362	A	G	8370.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:8,317:0.98:325
chr22	50018045	rs763128	G	A	2804.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.52;ReadPosRankSum=-0.491;SOR=0.648;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr22	50018069	rs2011097	A	G	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr22	50018497	rs5770594	G	A	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr22	50018639	rs4524218	G	A	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr22	50018651	rs135879	C	T	3466.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.45;ReadPosRankSum=0.865;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:1,77:0.99:78
chr22	50018654	rs135880	T	A	3382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.51;ReadPosRankSum=1.008;SOR=1.533;set=HC	GT:AD:AF:DP	1/1:1,75:0.99:76
chr22	50020588	rs139834846	G	A	8960.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:5,338:0.99:343
chr22	50051007	rs6009803	A	G	835.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.470;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.22;ReadPosRankSum=-0.507;SOR=0.246;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr22	50277835	rs910796	T	C	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr22	50277883	rs910797	A	G	8945.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:2,336:0.99:338
chr22	50278438	rs910798	A	G	8120.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr22	50278568	rs910799	A	G	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:4,169:0.98:173
chr22	50278642	rs910800	C	T	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	50280136	rs5770755	T	C	8789.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:6,334:0.98:340
chr22	50435480	rs5771069	A	G	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr22	50436846	rs79102851	G	GTCC	4480.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	50437976	rs7290572	G	T	1715.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=0.037;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:2,68:0.97:70
chr22	50439430	rs137845	A	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:5,54:0.92:59
chr22	50439755	rs137846	G	GCA	698.06	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr22	50468907	rs738333	C	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	50485793	rs137906	T	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	50487567	rs137911	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	50488804	rs137913	CT	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.994;QD=9.06;ReadPosRankSum=-0.096;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr22	50492952	rs12166717	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	50492970	rs12166094	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	50493062	rs17013085	T	C	2268.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.183;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=-0.713;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr22	50499964	rs137919	T	C	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	50500263	rs75152548	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr22	50502436	.	T	C	176	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=1;MGOF=114;MMLQ=16;MQ=46.34;NF=8;NR=0;PP=176;QD=26.3464015684;SC=ACCTCCCCAGTGCCCCCTCCC;SbPval=1.0;Source=Platypus;TC=11;TCF=11;TCR=0;TR=8;WE=50502444;WS=50502426;set=Platypus	GT:AD:AF:DP	1/0:3,8:0.73:11
chr22	50502469	.	A	AGCACCCCCACCCCACAGGCCACTCACCTCCCCG	1267.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	50502491	rs11568188	T	C	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	50502526	rs11568187	A	G	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	50502544	rs11568186	G	A	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	50502636	rs11568185	G	A	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	50502650	rs11568184	G	A	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	50502766	rs11568183	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr22	50506810	rs5771349	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	50507019	rs11568179	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	50507064	rs75474964	G	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	50507094	rs111258391	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	50508895	rs2076134	A	G	884.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.22;ReadPosRankSum=0.507;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr22	50508895	.	AGG	GGT	418	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=14;NR=6;PP=418;QD=23.5733937431;SC=AGGGAGGGCTAGGCCAGGCCC;SbPval=0.58;Source=Platypus;TC=20;TCF=14;TCR=6;TR=20;WE=50508905;WS=50508885;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	50508897	rs2076135	G	T	884.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.47;ReadPosRankSum=0.400;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr22	50515270	rs6010164	T	C	5492.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.530;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.25;ReadPosRankSum=-0.964;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:1,126:0.99:127
chr22	50515273	rs6010165	G	A	5394.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.86;ReadPosRankSum=-0.989;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,122:0.99:123
chr22	50515843	rs6010260	C	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:4,101:0.96:105
chr22	50518723	rs79301	A	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	50523433	rs137930	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	50546961	rs112945019	G	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr22	50547247	rs138217	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	50548099	.	CAAAAAAA	C	400.73	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr22	50555486	rs126241	G	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	50555619	rs138222	C	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	50564413	rs138242	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	50584261	rs12170772	C	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	50585626	rs4838852	A	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	50637597	rs8238	G	C	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	50657010	rs4838864	C	G	7072.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr22	50658053	rs6537642	A	G	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	50666507	rs55899818	C	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	50699487	rs2272856	G	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	50699668	rs2272857	A	G	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	50703572	rs10626765	C	CAG	5658.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	50704661	rs2076139	T	C	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	50705059	rs742185	A	G	18356.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr22	50705466	rs760748	A	G	10219.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr22	50708594	rs34355047	C	T	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:6,152:0.96:158
chr22	50708731	rs9617050	A	G	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	50713866	rs1042979	G	C	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	50714289	rs5771118	T	C	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	50715029	rs5771119	T	C	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr22	50715973	rs28637964	G	T	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr22	50716167	rs1127000	G	A	5851.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.336;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=-0.263;SOR=0.427;set=HC	GT:AD:AF:DP	1/1:9,228:0.96:237
chr22	50717129	rs28718510	T	G	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr22	50717547	rs28633213	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:4,90:0.96:94
chr22	50718397	rs28611220	A	G	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	50719165	rs28540713	T	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	50719251	rs11547734	A	G	5287.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:4,199:0.98:203
chr22	50719976	rs111925803	C	T	8844.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:10,333:0.97:343
chr22	50720181	rs28442189	C	G	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:6,215:0.97:221
chr22	50720622	rs11547728	C	T	8661.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:17,329:0.95:346
chr22	50721054	rs186471538	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	50722134	rs11547731	T	C	11076.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr22	50724172	.	A	AC	603	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=5;HapScore=1;MGOF=27;MMLQ=24;MQ=58.61;NF=13;NR=4;PP=603;QD=37.4705882353;SC=ACCGGCCGGCACCCCTCCCTC;SbPval=0.71;Source=Platypus;TC=18;TCF=13;TCR=5;TR=17;WE=50724180;WS=50724162;set=Platypus	GT:AD:AF:DP	1/0:1,17:0.94:18
chr22	50724190	rs28604596	G	T	174.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	50724733	rs55709850	G	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:3,58:0.95:61
chr22	50727921	rs28578714	T	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr22	50728062	rs28379706	T	C	5250.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	50750481	rs11553142	C	T	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	50757348	rs62241232	G	A	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr22	50853132	rs60172550	TC	T	1316.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	50853134	rs115621755	C	T	1325.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	50854317	rs6520165	T	C	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	50857140	rs7293044	G	A	48.22	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr22	50860565	rs9616844	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	50870620	rs2076712	G	T	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	50876077	rs9306550	T	C	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	50876235	rs5770779	T	C	8541.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr22	50876357	rs5770890	C	G	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	50877166	rs4824131	G	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	50882752	rs59017944	CT	C	1417.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr22	50885244	rs113982913	TTC	T	1899.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr22	50885775	rs1053744	A	G	14860.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:2,578:1.00:580
chr22	50895133	rs4824117	A	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	50899755	rs35628474	AG	A	1808.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.19;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	50899758	rs2073280	G	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.39;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	50901259	rs9617014	G	T	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	50901534	rs5771039	A	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	50903221	rs2076714	C	T	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	50906518	rs1983679	G	A	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	50906917	rs9616852	C	A	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr22	50913394	rs373485644	CGCG	C	622.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	50925405	rs2232876	C	T	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	50925672	rs2232878	T	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	50925914	rs56311845	GC	G	9682.73	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:16,323:0.95:339
chr22	50926768	rs2232883	C	T	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:6,118:0.95:124
chr22	50927405	rs186797086	T	C	2078.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=-0.098;QD=38.50;ReadPosRankSum=-1.284;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:2,52:0.96:54
chr22	50927406	rs191582380	G	A	2073.53	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.480;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.097;QD=37.70;ReadPosRankSum=-1.328;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:2,53:0.96:55
chr22	50927415	rs145096476	C	T	3037.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.176;QD=39.45;ReadPosRankSum=-0.195;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:4,73:0.95:77
chr22	50927447	rs139170143	C	CGTCCCTCCT,CCTCCT	6678.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=142;set=Intersection	GT:AF:DP	1/1:0.97:139
chr22	50941985	rs6009975	T	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	50942121	rs13056405	C	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	50942709	.	C	CCT	341	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=5;HapScore=3;MGOF=30;MMLQ=21;MQ=57.85;NF=19;NR=5;PP=341;QD=15.3333333333;SC=CCACACCCCCCGGTGCCCGGC;SbPval=0.57;Source=Platypus;TC=24;TCF=19;TCR=5;TR=24;WE=50942717;WS=50942699;set=Platypus	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	50942761	rs60021445	A	G	2046.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.91;MQRankSum=3.117;QD=23.80;ReadPosRankSum=1.810;SOR=0.348;set=HC	GT:AD:AF:DP	1/1:1,85:0.99:86
chr22	50943004	rs762671	C	A	6658.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	50943010	rs762670	G	A	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	50943232	rs8136495	G	A	7196.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr22	50943423	rs762669	G	A	6385.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr22	50945256	rs131824	A	G	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	50946965	rs131823	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	50968826	.	CAG	C	575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.095;QD=3.16;ReadPosRankSum=-0.787;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:148,34:0.19:182
chr22	51010788	rs131761	T	A	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	51015210	rs140515	G	C	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,171:0.99:172
chr22	51015481	rs131759	G	A	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:3,84:0.97:87
chr22	51018579	rs140514	A	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:3,91:0.97:94
chr22	51042032	rs6010025	G	T	17083.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.453;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.97;ReadPosRankSum=-1.137;SOR=0.506;set=HC	GT:AD:AF:DP	1/1:17,390:0.96:407
chr22	51042032	.	GCC	TCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=4;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=173;NR=177;PP=2947;QD=20;SC=CCTCAGGACCGCCGTCATGTA;SbPval=0.48;Source=Platypus;TC=374;TCF=187;TCR=187;TR=350;WE=51042042;WS=51042022;set=Platypus	GT:AD:AF:DP	1/1:24,350:0.94:374
chr22	51042034	rs6009938	C	G	17083.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=1.460;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.39;ReadPosRankSum=-1.562;SOR=0.530;set=HC	GT:AD:AF:DP	1/1:17,406:0.96:423
chr22	51042513	rs140511	C	CG	3823.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=40.25;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	51043278	rs3219201	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	51044144	.	C	G	8602.77	.	AC=2;AF=1.00;AN=2;DP=350;set=Intersection	GT:AD:AF:DP	1/1:12,336:0.97:348
chr22	51045190	rs1140555	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	51045433	rs131736	C	T	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr22	51045480	rs131735	G	A	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr22	51048781	rs5770941	T	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr22	51063987	rs762674	G	C	5820.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.46;ReadPosRankSum=-0.832;SOR=0.400;set=HC	GT:AD:AF:DP	1/1:1,219:1.00:220
chr22	51064141	rs762673	G	A	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:4,146:0.97:150
chr22	51064818	rs762672	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr22	51113801	rs71198268	C	CTGTGTGTG,CTGTGTG	126.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=9;set=Intersection	GT:AF:DP	0/1:0.75:4
chr22	51115001	.	G	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.478;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr22	51135451	rs9616939	G	C	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	51135545	rs9616818	T	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	51135595	rs28735993	A	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	51137094	rs9616942	G	A	1047.78	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:3,44:0.94:47
chr22	51137249	rs1557620	T	C	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	51150167	rs5770819	T	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr22	51171497	rs2301584	G	A	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr22	51182485	rs6009961	A	G	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	51183255	rs5771002	A	G	1739.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.71;MQRankSum=0.539;QD=25.97;ReadPosRankSum=-1.330;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:3,64:0.96:67
chr22	51208537	rs144478186	G	A	541.10	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chrX	2699968	rs2306737	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chrX	2700027	rs2306736	T	C	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:154,91:0.37:245
chrX	2700157	rs5939319	G	A	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:68,106:0.61:174
chrX	2700202	rs5939320	A	G	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chrX	2724760	rs3749988	T	C	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	2726396	rs6567645	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	2729540	rs11439714	T	TA	2085.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:22,112:0.84:134
chrX	2732166	rs5939337	A	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	2732356	rs34201156	C	CTT	2239.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:4,78:0.95:82
chrX	2748253	rs6642032	G	C	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chrX	2761050	rs11797037	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chrX	2774478	rs5939132	A	G	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chrX	2774700	rs5939133	T	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chrX	2816082	rs5939390	T	C	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	2827794	rs61456366	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.912;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chrX	2832742	rs211648	G	C	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	2833506	rs211649	G	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	2833856	rs211650	T	C	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	2836037	rs211653	G	C	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chrX	2856155	rs35143646	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chrX	2871011	rs211640	G	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chrX	2877835	rs211636	G	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chrX	2877876	rs211637	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chrX	2878296	rs5982940	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.40;QD=34.88;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	2878304	rs12836850	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.08;MQRankSum=0.431;QD=8.08;ReadPosRankSum=1.803;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chrX	2942109	rs5939407	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:98,57:0.37:155
chrX	2947118	rs377018684	CA	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.355;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.189;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chrX	2950961	rs5982634	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chrX	2950998	rs5939411	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chrX	2951434	rs5939155	C	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chrX	2999141	rs5983001	G	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chrX	3002219	rs5983002	T	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,45:0.38:117
chrX	3002687	rs5983003	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chrX	3007480	rs2290453	G	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:107,51:0.32:158
chrX	3028260	rs17051478	C	T	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:155,79:0.34:234
chrX	3028289	rs5983011	C	T	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:179,82:0.31:261
chrX	3028385	rs5983012	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:70,46:0.40:116
chrX	3028405	rs5982644	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chrX	3030181	rs7053230	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,35:0.39:89
chrX	3030426	rs10522044	G	A	4219.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:352,216:0.38:568
chrX	3238486	.	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chrX	3530512	rs7066317	A	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	3592725	rs10871864	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:172,83:0.33:255
chrX	3592847	rs7880937	C	T	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	3631167	rs3752362	A	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chrX	5811807	rs61095217	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chrX	5909290	.	CT	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=9.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.806;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chrX	7177374	rs56055086	C	T	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chrX	7890215	rs1183732	C	T	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chrX	8095173	rs1037521	T	A	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	8138080	rs1058239	G	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.53;QD=25.50;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	8138160	rs1058238	T	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.90;QD=44.17;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	8138165	rs1058237	C	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.90;QD=44.17;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	8138170	rs75657421	CT	GC	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=57.61;QD=50.06;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	8138182	rs41305169	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	8270569	.	AAAAGAAAGAAAGAAAGAAAG	A	1404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.24;MQRankSum=2.422;QD=29.89;ReadPosRankSum=-0.709;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chrX	8467201	.	A	AAG	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=1.569;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chrX	8467239	rs372703313	AAAAG	A	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.68;ReadPosRankSum=0.077;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chrX	8467277	rs200326511	GAAGA	G	1366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.157;QD=23.98;ReadPosRankSum=-1.698;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chrX	8475698	rs2098137	T	G	100.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.319;QD=12.60;ReadPosRankSum=-0.619;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chrX	8475734	rs200940482	AAAAG	A	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.251;QD=14.13;ReadPosRankSum=2.359;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chrX	8503641	rs809446	G	A	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.936;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-1.539;QD=9.08;ReadPosRankSum=-1.111;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:62,52:0.46:114
chrX	8504773	rs808120	G	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chrX	8504833	rs808119	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chrX	8553547	rs56186619	T	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chrX	8700168	rs1236390	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.30;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chrX	8761553	rs5978272	T	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chrX	8761625	rs2188935	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chrX	8766291	rs2018496	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chrX	9622194	.	C	CA	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=10.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-0.864;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chrX	9659475	.	C	CA	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.290;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chrX	9659766	rs2301675	G	A	2304.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:135,68:0.33:203
chrX	9659767	rs3214138	T	TG	2297.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:135,68:0.33:203
chrX	9659863	rs2301674	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chrX	9661110	rs3747431	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chrX	9661165	rs3747430	G	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:90,47:0.34:137
chrX	9665368	rs2239411	C	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.535;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chrX	9693652	rs3044	G	A	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chrX	9729001	rs12560076	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	9859098	rs6640543	A	G	8133.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chrX	9859197	rs6640544	A	G	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chrX	9863112	rs6530341	A	G	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:181,98:0.35:279
chrX	9866085	rs2073943	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chrX	9866420	rs2073944	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chrX	9913091	.	C	T	176.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chrX	10059046	.	TAC	T	107	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=19;MQ=59.29;NF=1;NR=3;PP=107;QD=29.0;SC=GTGTATATAATACACACACAC;SbPval=0.17;Source=Platypus;TC=22;TCF=1;TCR=21;TR=4;WE=10059055;WS=10059036;set=Platypus	GT:AD:AF:DP	0/1:18,4:0.18:22
chrX	10062079	rs5934746	T	A	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:27,69:0.72:96
chrX	10062163	rs5934747	G	C	3323.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:59,145:0.71:204
chrX	10085582	rs5934750	G	A	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:62,138:0.69:200
chrX	10085674	rs6530368	T	C	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chrX	10153374	rs2073938	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chrX	10166198	rs2240019	A	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chrX	10174386	rs5934810	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chrX	10180424	rs187351593	G	A	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chrX	10533042	rs5901437	TA	T	231.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.447;QD=11.03;ReadPosRankSum=1.240;SOR=1.577;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chrX	11133069	rs2070163	C	T	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chrX	11313027	rs946252	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:75,60:0.44:135
chrX	11682308	rs9887011	A	G	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,53:0.62:85
chrX	11786839	rs2525868	T	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chrX	12722616	rs4469660	C	G	4632.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	12725042	.	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=6.479;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.533;QD=1.56;ReadPosRankSum=0.000;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chrX	12739294	rs3827468	A	G	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:130,186:0.59:316
chrX	12809661	rs1731469	G	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:195,106:0.35:301
chrX	12837558	rs5935399	C	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	12838934	rs917580	A	G	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chrX	12903659	rs179008	A	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:65,22:0.25:87
chrX	12924697	rs3764879	C	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chrX	12924826	rs3764880	A	G	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:81,95:0.54:176
chrX	12937804	rs5744080	C	T	7714.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:309,364:0.54:673
chrX	12939112	rs2407992	G	C	5312.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:150,233:0.61:383
chrX	12939928	rs2109135	T	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chrX	12940375	rs5744086	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chrX	12993511	rs115781169	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chrX	12993527	.	G	A	938.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chrX	13056654	rs4830483	T	C	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	13397003	rs112432165	C	T	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-1.186;QD=11.79;ReadPosRankSum=-0.672;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:23,31:0.57:54
chrX	13681115	rs2361159	C	T	7603.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chrX	13681638	rs5935649	C	T	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	13681679	rs5935650	G	T	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	13734539	rs2285633	T	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	13734919	rs35084098	C	CTTTG	1261.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	13758375	rs2238908	G	A	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chrX	13769593	rs3214141	GA	G	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.250;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chrX	13771576	rs3815049	A	G	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	13775752	rs36052228	AT	A	461.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=1.197;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chrX	13779409	rs112117780	A	AT	892	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:8,52:0.87:60
chrX	13803960	rs5978663	C	T	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	13835096	rs3747420	T	C	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chrX	14599230	rs2074210	A	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chrX	14599572	rs2074211	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chrX	14625399	.	C	CTT	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.718;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:55,33:0.38:88
chrX	14708781	rs374170979	TTC	T	49.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chrX	14868806	rs2905223	A	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.487;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chrX	14930353	rs11400370	C	CT	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chrX	15262813	rs112382242	T	TG	1035.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:5,55:0.92:60
chrX	15262814	rs28628283	T	A	2547.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chrX	15266819	rs1139868	C	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chrX	15301533	rs5935925	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chrX	15307563	rs5935930	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chrX	15308103	rs5934230	G	T	199.78	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chrX	15308163	rs6628942	A	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-0.256;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chrX	15332451	rs201659261	CT	C	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.019;QD=5.31;ReadPosRankSum=-0.606;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:35,39:0.53:74
chrX	15332558	rs5935944	A	G	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:101,155:0.61:256
chrX	15333842	rs4830529	T	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	15343401	rs35222742	C	CAA	324.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	15353483	rs45538433	G	C	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:97,144:0.60:241
chrX	15353689	rs4830938	T	C	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	15373247	.	T	TA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.946;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=7.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.827;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chrX	15373469	rs4531212	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chrX	15381109	rs6629030	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chrX	15403351	rs5935959	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chrX	15408419	rs2317326	T	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chrX	15408516	rs3833896	C	CA	138.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;MQ=60.67;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chrX	15415583	rs8094	C	T	8840.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chrX	15415780	rs3829989	C	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	15498034	rs5935986	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	15552564	rs1877752	T	C	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	15552573	rs34879154	G	GA	1358.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	15554602	rs28505625	T	G	1547.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.267;QD=23.81;ReadPosRankSum=-0.019;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:2,63:0.97:65
chrX	15554625	rs61657459	CA	C	601.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.442;QD=16.26;ReadPosRankSum=0.904;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chrX	15591684	.	ATT	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.77;ReadPosRankSum=-0.250;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chrX	15596143	rs113691336	C	CATAAG	3566.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	15607650	rs971249	T	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	15613121	.	A	T	436.77	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:65,25:0.28:90
chrX	15677251	rs200705258	T	TG	1364.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:83,59:0.42:142
chrX	15706830	rs4060	C	A	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.880;MLEAC=1;MLEAF=0.500;MQ=50.32;MQRankSum=0.921;QD=10.50;ReadPosRankSum=-0.703;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:44,41:0.48:85
chrX	15711209	rs1996225	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chrX	15792527	rs4364812	T	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.96;QD=28.32;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	15794764	rs5980183	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chrX	15794815	rs5936050	G	A	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	15800600	rs4830548	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chrX	15800751	rs1808	G	A	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:142,86:0.38:228
chrX	15808795	rs4830994	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	16168467	rs4986945	T	C	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chrX	16168677	rs4986946	T	C	12468.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chrX	16189670	rs12839379	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	16608793	rs1527805	G	A	5910.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chrX	16709626	rs5980322	G	A	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:168,107:0.39:275
chrX	16762002	rs4830562	A	G	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	16859628	rs5924530	G	A	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:130,63:0.33:193
chrX	16872015	rs11305571	AT	A	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=0.434;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chrX	16873058	rs5924532	A	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.595;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.805;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chrX	16873108	rs150641871	GTT	G	663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.096;QD=9.91;ReadPosRankSum=0.718;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:32,35:0.52:67
chrX	16873176	rs66524293	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.573;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chrX	16876980	rs4828536	G	A	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:123,60:0.33:183
chrX	16887655	rs67984110	C	T	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:70,116:0.62:186
chrX	17070688	rs933946	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	17073092	rs73189116	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chrX	17080492	rs713355	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chrX	17092152	rs1346246	G	T	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	17122102	rs714070	C	T	302.10	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chrX	17157148	rs1946395	T	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	17705850	rs5901624	C	CT	10882.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chrX	17710353	rs11347866	CT	C	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.300;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:44,26:0.37:70
chrX	17743940	rs150688899	C	T	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:213,98:0.32:311
chrX	17746244	rs3747295	T	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:131,96:0.42:227
chrX	17746669	rs10643465	C	CTGTT	465.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chrX	17763728	rs16980670	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chrX	17819377	rs6527818	T	C	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chrX	17820180	rs2187846	A	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chrX	18265847	rs73191503	A	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:81,60:0.43:141
chrX	18582646	.	G	GAT	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.288;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chrX	18597869	rs4825261	C	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chrX	18631213	.	T	TA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.091;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chrX	18671795	rs56396491	AT	GA	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	18779721	rs2269584	A	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	18779847	rs58142596	C	CT	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.54;ReadPosRankSum=1.180;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chrX	18800531	.	CTT	C,CT	586.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.464;QD=13.33;ReadPosRankSum=1.575;SOR=0.937;set=HC	GT:AD:AF:DP	1/2:6,17,21:0.39,0.48:44
chrX	18824794	rs2239437	T	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	18844012	rs2273247	G	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	18929128	rs11291764	CT	C	630.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.587;QD=12.37;ReadPosRankSum=-1.097;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:10,41:0.80:51
chrX	18970447	.	CA	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=-0.748;QD=1.82;ReadPosRankSum=-0.530;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chrX	18972497	rs17313469	C	G	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:69,95:0.58:164
chrX	19018109	.	AT	A	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.315;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chrX	19037666	rs372068061	AT	A	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.445;QD=2.77;ReadPosRankSum=0.209;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chrX	19086800	rs368592681	GA	G	922.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.142;QD=8.39;ReadPosRankSum=0.450;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:47,63:0.57:110
chrX	19363863	rs71737866	TC	T	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.298;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chrX	19478294	rs5909118	T	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,36:0.41:87
chrX	19478336	rs61014139	C	CA	522.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chrX	19482476	rs5909299	C	T	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.420;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:124,50:0.29:174
chrX	19606999	rs72456072	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.606;QD=1.81;ReadPosRankSum=-2.108;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chrX	19688957	.	CA	C	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.017;QD=3.93;ReadPosRankSum=0.061;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:96,70:0.42:166
chrX	20194479	.	GA	G	589.73	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chrX	20204548	.	TA	T	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=1.622;QD=2.62;ReadPosRankSum=1.624;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chrX	20253004	.	CA	C	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.586;QD=2.34;ReadPosRankSum=0.360;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:105,49:0.32:154
chrX	20284862	rs11276983	GGCGGCA	G	1291.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.48;QD=39.14;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	21444852	rs3752330	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chrX	21516067	.	A	G	44.77	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chrX	21861434	rs3213451	A	G	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chrX	21874560	rs730678	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chrX	21875821	rs11339991	TA	T	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	21985464	rs3747276	C	T	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	21990455	rs7051872	G	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	22002711	rs2239674	A	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chrX	22051034	rs178710	A	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chrX	22065121	rs178720	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chrX	22116211	.	G	GT	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.002;QD=4.20;ReadPosRankSum=-1.560;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chrX	22230975	rs3213493	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chrX	22231249	rs11416169	C	CA	1332.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chrX	22244435	.	T	TTGAA	211.75	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chrX	23352904	.	T	TGCC	354.74	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=44.34;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	23682589	rs4828890	T	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chrX	23682877	rs477914	T	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chrX	23682976	rs476316	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chrX	23685964	rs496067	T	C	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:59,108:0.65:167
chrX	23689636	rs513572	AT	TC	5657.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;JOINED;set=Intersection	GT:AD:AF:DP	0/1:69,141:0.67:210
chrX	23693084	.	AT	A	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.494;QD=1.69;ReadPosRankSum=0.102;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:91,34:0.27:125
chrX	23697485	rs795493	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chrX	23700473	rs552105	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chrX	23700693	rs795489	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chrX	23701662	rs2665364	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chrX	23723554	rs580192	C	T	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:68,104:0.60:172
chrX	23724663	rs473128	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.61;ReadPosRankSum=0.512;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chrX	23739857	rs5970601	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	23740681	rs55779124	C	CAA,CAAA	768.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.51;ReadPosRankSum=0.786;SOR=3.056;set=HC	GT:AD:AF:DP	1/2:1,18,10:0.62,0.34:29
chrX	23748501	rs12388535	C	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chrX	23761122	rs3764883	A	C	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:37,75:0.67:112
chrX	23801593	rs3764885	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	23801702	rs3764884	G	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.63;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	23858338	rs41305191	T	C	229.78	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chrX	23858452	rs8680	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=1.495;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chrX	23897003	rs5970803	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:139,57:0.29:196
chrX	23928489	rs2707164	C	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chrX	23934202	rs2520230	A	G	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chrX	23945611	rs2707144	G	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=-0.034;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chrX	24007151	rs5925972	A	G	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chrX	24073761	rs36018672	C	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:157,78:0.33:235
chrX	24075862	rs16997659	A	G	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:41,99:0.71:140
chrX	24084241	rs150782745	G	GT	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.535;QD=5.91;ReadPosRankSum=-0.791;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chrX	24089989	.	GTT	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.937;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chrX	24381387	rs1207577	G	C	8830.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chrX	24382373	.	T	TTGC,TTGCTGCTGC	2997	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.26;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=22;MQ=59.13;NF=43,43;NR=65,65;PP=2997,1613;QD=20;SC=GCTGCTGCTATTGCTGCTGCT;SbPval=0.01;Source=Platypus;TC=237;TCF=56;TCR=181;TR=108,108;WE=24382383;WS=24382362;set=Platypus	GT:AF:DP	0/1:0.46:237
chrX	24382390	.	G	GCTA	2997	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=1;MGOF=23;MMLQ=28;MQ=58.91;NF=55;NR=66;PP=2997;QD=20;SC=TGCTGCTGCTGCTGCTGCTGC;SbPval=0.03;Source=Platypus;TC=239;TCF=74;TCR=165;TR=121;WE=24382398;WS=24382380;set=Platypus	GT:AD:AF:DP	1/0:118,121:0.51:239
chrX	24382422	.	TGCTGCTCCTGCTCCTGCTCTA	T	2997	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=27;MQ=58.66;NF=51;NR=88;PP=2997;QD=20;SC=CTGCTGCTGCTGCTGCTCCTG;SbPval=0.53;Source=Platypus;TC=225;TCF=82;TCR=143;TR=139;WE=24382461;WS=24382412;set=Platypus	GT:AD:AF:DP	0/1:86,139:0.62:225
chrX	24382426	.	GCTC	G	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.741;QD=3.91;ReadPosRankSum=6.476;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:121,32:0.21:153
chrX	24382435	.	CCTGCTCTAGCTGCTGCTG	C	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.696;QD=3.28;ReadPosRankSum=7.425;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:137,32:0.19:169
chrX	24382792	rs5944420	G	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:99,54:0.35:153
chrX	24382950	rs16982979	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:50,75:0.60:125
chrX	24536954	.	GCACACACACA	G,GCA	1237.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=36;set=Intersection	GT:AF:DP	1/2:0.77,0.23:31
chrX	24580746	rs1882403	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chrX	24593453	rs3833417	GA	G	1899.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:73,114:0.61:187
chrX	24593513	rs3747401	T	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,53:0.59:90
chrX	24597316	.	A	AAG	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.037;QD=16.93;ReadPosRankSum=-0.584;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chrX	24608369	rs184318257	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chrX	24665273	rs1207651	G	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:77,51:0.40:128
chrX	24751958	rs4058344	T	C	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	24760276	rs113389943	AC	A	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.613;QD=3.60;ReadPosRankSum=0.254;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chrX	24766651	rs3764770	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chrX	26157220	rs5944317	C	T	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:93,153:0.62:246
chrX	26157792	rs5944318	C	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:63,73:0.54:136
chrX	26179532	rs5943854	A	G	4173.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:88,178:0.67:266
chrX	26213219	rs5986312	T	C	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:79,132:0.63:211
chrX	27479339	rs12842916	A	G	7191.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chrX	27765399	.	A	AGAG	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=2.127;QD=20.84;ReadPosRankSum=0.805;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chrX	27839572	rs1368769	T	C	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:92,48:0.34:140
chrX	27839617	rs12557898	G	A	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:137,71:0.34:208
chrX	28807345	rs12009069	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chrX	28807442	rs6526806	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chrX	29417510	rs4829347	C	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	30236878	rs2529541	G	A	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	30254361	rs2071308	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chrX	30254376	rs2071309	T	C	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	30254530	rs2071310	A	G	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chrX	30261002	rs2071311	A	G	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chrX	30261158	rs2856733	G	C	8017.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chrX	30323948	rs3788890	T	G	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=0.469;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chrX	30327367	rs6150	G	A	9774.77	.	AC=1;AF=0.500;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	0/1:327,458:0.58:785
chrX	30577846	rs887369	A	C	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.299;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.223;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:231,76:0.25:307
chrX	30671896	rs12854653	G	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	30695941	rs11400828	C	CA	368.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-1.734;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chrX	30709444	rs55895067	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chrX	30712796	rs5927587	G	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chrX	30713435	rs143570050	G	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:63,28:0.31:91
chrX	30715827	rs2035432	C	T	4609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.134;QD=12.39;ReadPosRankSum=-0.067;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:168,204:0.55:372
chrX	30725794	rs4617310	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.524;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chrX	30742592	rs75486718	GA	G	985.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chrX	30745790	rs5927596	A	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chrX	30872602	rs5927629	A	G	6512.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chrX	30877477	rs137921689	C	CCA	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chrX	31132797	.	CGGG	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=0.497;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chrX	31165310	rs1484852	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chrX	31165667	rs200534475	AAAAG	A	2499.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=42.37;SOR=1.773;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	31191589	rs2404496	C	T	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	31200832	rs3833412	A	AT	1079.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:53,69:0.57:122
chrX	31224684	rs2293668	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:141,59:0.29:200
chrX	31224881	rs2293667	G	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chrX	31284771	.	A	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=53.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.958;SOR=6.147;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chrX	31496350	rs1800280	C	T	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chrX	31496566	rs17338583	G	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chrX	31526200	rs3788893	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chrX	31676096	rs2270672	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chrX	31697636	rs1801188	A	G	3479.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:99,159:0.62:258
chrX	31854782	rs1379871	G	C	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chrX	31986430	rs3761604	C	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chrX	32366556	.	C	A	2098.77	.	AC=1;AF=0.500;AN=2;DP=282;set=Intersection	GT:AD:AF:DP	0/1:167,113:0.40:280
chrX	32459169	rs41303185	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chrX	32472763	rs5902031	C	CT	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.208;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chrX	32486756	rs1800268	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:106,80:0.43:186
chrX	32503194	rs228406	T	C	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:94,110:0.54:204
chrX	32563263	rs228373	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chrX	32563488	rs115571	A	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	32716132	rs72470514	GG	TC	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chrX	32868070	rs3764763	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chrX	35984638	.	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.081;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chrX	36103366	.	G	GT	511.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chrX	36156447	rs376682738	AT	A	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.320;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chrX	37431635	rs5963719	TC	CT	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;JOINED;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chrX	37883167	rs145326096	AAAGT	A	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chrX	37883303	rs34578085	G	GA	244.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chrX	38037479	rs5918489	A	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	38079975	rs72249350	CGCA	C	1444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-0.566;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:87,42:0.33:129
chrX	38080703	rs7877137	G	T	1750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=0.694;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:71,87:0.55:158
chrX	38132628	rs4084271	A	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chrX	38160695	rs41311843	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	38169777	rs35587043	T	TA	2034.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:41,99:0.71:140
chrX	38177967	rs3810691	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chrX	38240587	.	T	TA	807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.671;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:136,57:0.30:193
chrX	38280206	rs12557315	C	T	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chrX	38515168	rs5917614	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chrX	38530810	rs41312149	C	A	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:43,75:0.64:118
chrX	38535174	rs4826996	A	G	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chrX	39932493	.	C	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=1.393;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:171,36:0.17:207
chrX	39933339	rs5917933	A	G	10903.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:1,406:1.00:407
chrX	40456961	rs3112299	G	C	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	40499403	rs4827221	C	T	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	40506697	rs6610447	A	G	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chrX	40514322	rs11266293	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	40551599	rs11292945	TA	T	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.805;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.481;QD=2.87;ReadPosRankSum=-0.567;SOR=0.329;set=HC	GT:AD:AF:DP	0/1:66,37:0.36:103
chrX	40556492	rs5918029	C	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	40562685	.	T	G	360.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chrX	40990537	rs145997380	G	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chrX	40993907	rs17145961	T	G	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-1.039;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chrX	40993938	rs56367456	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chrX	40996313	rs113937187	A	G	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:72,126:0.64:198
chrX	40999853	rs41298468	C	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chrX	41007940	rs1978255	C	T	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chrX	41012102	rs2302380	G	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chrX	41012486	rs55649554	TAA	T	305.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chrX	41030903	rs41311841	T	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chrX	41055311	rs6520734	G	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	41056877	rs112930317	CTTT	C	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chrX	41058132	rs3788877	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.80;ReadPosRankSum=-0.718;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chrX	41060613	rs1321127	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chrX	41073730	rs7051021	A	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.53;ReadPosRankSum=-1.409;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chrX	41073734	rs2058321	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=-0.389;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chrX	41524788	rs200400188	AATCCAAATAAAAAGTT	A	2119.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chrX	41554814	rs913602	T	C	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chrX	41587218	rs1023065	T	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	43587650	rs189836375	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chrX	43591036	rs6323	G	T	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chrX	43595428	rs2235186	A	G	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	43601142	rs979606	C	T	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	43601363	rs979605	A	G	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chrX	43602965	rs5905418	A	G	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-2.663;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:43,29:0.40:72
chrX	43603391	rs1137070	T	C	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	43741616	rs1181251	G	C	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chrX	44202890	rs5902346	G	GC	5965.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	44833826	rs112536942	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chrX	44833841	rs6611055	C	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	44834045	rs200529431	C	CT	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chrX	44897039	rs200420008	TG	T	405.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chrX	44913052	rs5952285	T	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chrX	44920068	rs3788869	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chrX	44929077	rs2230018	C	A	3097.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:83,131:0.61:214
chrX	44935877	.	CT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-2.401;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chrX	44935924	rs200364326	CTT	C,CT	1746.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=22.98;SOR=0.886;set=HC	GT:AD:AF:DP	1/2:0,53,23:0.70,0.30:76
chrX	44949284	rs5952675	A	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chrX	44949951	.	G	GT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=2.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.397;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chrX	44966795	rs5952682	T	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:87,55:0.39:142
chrX	44966805	rs11343829	GT	G	1297.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,48:0.38:125
chrX	45011340	rs4824527	T	C	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	45017166	rs5952693	A	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	45023327	rs73206205	G	A	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=9.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.525;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:85,28:0.25:113
chrX	45050973	rs4239958	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chrX	45051111	rs1132201	C	T	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:65,115:0.64:180
chrX	45606319	rs369975980	AGT	A	241.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;QD=26.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	45606716	rs34678647	G	T	229.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chrX	46321944	rs11342771	CA	C	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=3.30;ReadPosRankSum=2.341;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chrX	46387921	rs56160764	G	A	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:100,132:0.57:232
chrX	46388442	rs2003665	G	A	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chrX	46388458	rs5906232	T	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chrX	46466775	rs1883255	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chrX	46472666	rs6611276	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chrX	46472826	rs3208940	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chrX	46513260	rs370041978	CT	C	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.230;QD=6.93;ReadPosRankSum=0.961;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:34,38:0.53:72
chrX	46618321	rs1056846	C	G	1807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=1.205;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:31,80:0.72:111
chrX	46737138	rs58164919	G	GGTGTGT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.18;ReadPosRankSum=0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chrX	46893249	rs5906311	G	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	46944155	rs6611328	A	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chrX	46949403	rs6611330	C	T	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chrX	46951004	rs5906327	G	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chrX	46952219	rs4480242	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chrX	47007061	rs200972382	C	CCTGTGCT	846.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chrX	47036113	rs375726080	GTC	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.605;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chrX	47057647	rs4468050	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	47060844	rs4239963	C	G	3754.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:104,168:0.62:272
chrX	47061018	rs4239964	C	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chrX	47063146	rs11463928	C	CT	170.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.838;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chrX	47065186	rs4339766	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chrX	47086347	rs6417923	G	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:126,67:0.35:193
chrX	47086681	rs5902386	A	AC	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chrX	47102847	.	G	A	3597.77	.	AC=1;AF=0.500;AN=2;DP=508;set=Intersection	GT:AD:AF:DP	0/1:314,192:0.38:506
chrX	47107350	.	GA	G	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=5.957;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.495;QD=3.32;ReadPosRankSum=-0.617;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:65,40:0.38:105
chrX	47107397	rs189057712	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chrX	47229909	rs3810666	G	A	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	47229935	rs3810665	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	47230204	rs6608713	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	47269516	rs6608717	A	G	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	47372920	rs3748519	C	T	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	47372966	rs3748518	G	T	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=59.38;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chrX	47424615	rs2071776	C	T	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:353,175:0.33:528
chrX	47430165	rs2858769	C	T	2134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=1.997;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:190,119:0.39:309
chrX	47430457	rs2854412	A	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:67,42:0.39:109
chrX	47430509	rs34987183	AGT	A	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.077;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-0.334;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chrX	47430611	.	G	GGT	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.759;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:62,29:0.32:91
chrX	47430614	.	GT	G	1356.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.145;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:64,37:0.37:101
chrX	47430616	rs201066367	GTGTGT	G	842.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.509;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=1.089;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:71,35:0.33:106
chrX	47430623	.	T	G	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.224;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chrX	47430670	rs66838530	TG	T	2383.73	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:171,90:0.34:261
chrX	47442971	.	C	G	3732.77	.	AC=1;AF=0.500;AN=2;DP=657;set=Intersection	GT:AD:AF:DP	0/1:434,217:0.33:651
chrX	47443111	rs55696512	G	A	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chrX	47444879	rs5953060	G	C	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:118,63:0.35:181
chrX	47444985	rs4898	T	C	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:167,94:0.36:261
chrX	47445286	rs6609533	A	G	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:315,183:0.37:498
chrX	47464291	rs3842471	GC	G	821.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chrX	47466361	rs1142636	A	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chrX	47483800	rs1048118	G	A	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:117,122:0.51:239
chrX	47483925	rs2235182	A	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chrX	47486486	rs909523	C	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chrX	47487912	rs11436787	T	TG	7511.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chrX	47487916	rs8177072	T	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:108,80:0.43:188
chrX	47519504	.	C	CCCTTCCTTCCTTCCTTCCTT	356.73	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chrX	47755164	rs3949810	C	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	47757758	rs5906510	T	G	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	47918205	rs501128	G	A	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	47919623	.	T	TAC	192.75	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	47920356	rs727079	A	G	8667.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chrX	47927449	rs2152823	G	A	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	48049666	rs5906557	C	T	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chrX	48053521	rs4239967	T	C	9087.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chrX	48054740	rs4824675	C	G	9636.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chrX	48073924	rs4593689	T	C	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:75,43:0.36:118
chrX	48116786	rs7886344	C	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:38,83:0.69:121
chrX	48123139	rs56131009	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chrX	48158947	rs41310647	T	C	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:53,110:0.67:163
chrX	48163105	rs4598385	A	G	7692.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:195,352:0.64:547
chrX	48163717	rs3901052	C	T	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:102,149:0.59:251
chrX	48163886	rs3885827	G	A	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:95,123:0.56:218
chrX	48164138	rs5906631	A	G	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chrX	48317386	rs17281188	A	G	4811.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:129,224:0.63:353
chrX	48320301	rs2293952	C	G	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:66,101:0.60:167
chrX	48326216	rs2293953	A	G	7272.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:162,321:0.66:483
chrX	48339985	rs2070991	C	T	6457.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:163,285:0.64:448
chrX	48382099	.	CT	C	195.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=1.207;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:3,15:0.83:18
chrX	48432791	rs2661105	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	48433499	rs2249583	C	G	7308.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chrX	48433529	rs2249585	C	T	8505.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chrX	48435308	rs235830	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	48435928	rs235829	C	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	48460314	rs235842	A	G	8475.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chrX	48460625	rs235841	G	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chrX	48544650	rs235423	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chrX	48649426	rs139472040	A	AG	1469.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=47.41;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	48649449	rs62600348	T	G	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	48649456	rs66717003	T	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	48760459	rs55729004	G	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chrX	48847497	rs11545861	T	C	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:186,111:0.37:297
chrX	48858802	rs28727466	G	A	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chrX	48888074	rs3027472	T	C	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:94,89:0.49:183
chrX	48898183	rs7056903	C	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	48900900	rs4824738	T	G	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	48970697	rs149060491	G	A	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:204,110:0.35:314
chrX	49021256	rs5906744	A	G	9012.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chrX	49021537	rs5905720	G	C	8537.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chrX	49022276	rs5953269	C	G	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=2.681;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	49022286	rs72619037	C	G	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.23;SOR=2.777;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	49022291	.	GT	G	4278.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	49022293	rs75416104	C	G	4466.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.52;SOR=2.858;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chrX	49022293	.	CAA	GAG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=57;NR=11;PP=2947;QD=20;SC=GAACGCCTGTCAAGGGAGATT;SbPval=0.96;Source=Platypus;TC=102;TCF=74;TCR=28;TR=68;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:34,68:0.67:102
chrX	49022295	rs138365388	A	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=2.678;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	49022309	rs73634213	C	A	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=1.858;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	49022309	.	CAA	AAG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=27;MQ=60.0;NF=94;NR=41;PP=2947;QD=20;SC=AGATTTCTCTCAAGGTCAGGG;SbPval=0.56;Source=Platypus;TC=145;TCF=100;TCR=45;TR=135;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:10,135:0.93:145
chrX	49022311	rs7880193	A	G	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.742;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	49022700	rs4824462	T	C	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	49069366	rs2071316	C	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chrX	49070813	rs2071317	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chrX	49071964	rs2075866	A	G	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:53,82:0.61:135
chrX	49075256	rs113785888	G	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=-0.572;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chrX	49077583	rs2869212	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chrX	49081291	rs2235127	G	A	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:101,160:0.61:261
chrX	49084492	rs6609854	C	T	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:110,172:0.61:282
chrX	49087487	rs5905724	G	A	1729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.156;QD=16.17;ReadPosRankSum=-0.824;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:33,74:0.69:107
chrX	49093528	rs2294016	T	C	3901.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:103,169:0.62:272
chrX	49098631	rs2294018	A	G	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=9.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-1.033;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:93,102:0.52:195
chrX	49103097	rs2294019	T	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chrX	49103224	rs2294020	G	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,53:0.69:77
chrX	49104815	rs2280882	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.690;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chrX	49105610	rs2294021	T	C	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:200,113:0.36:313
chrX	49369711	rs3747318	A	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chrX	49370511	rs35846904	A	AAAT	546.74	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chrX	49454178	.	A	AATAT	49	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.80;ReadPosRankSum=0.253;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chrX	49642957	.	T	C	25	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=11;HapScore=2;MGOF=7;MMLQ=24;MQ=56.33;NF=3;NR=1;PP=25;QD=14.9428031368;SC=GCTGCCCCCCTCCCCCGGGAT;SbPval=0.29;Source=Platypus;TC=12;TCF=11;TCR=1;TR=4;WE=49642965;WS=49642947;set=Platypus	GT:AD:AF:DP	1/0:8,4:0.33:12
chrX	49767832	rs456615	A	G	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	49767835	rs456617	A	G	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.33;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	49767904	rs149259	A	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	49856719	rs56041343	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chrX	49962124	rs17328195	T	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:149,89:0.37:238
chrX	50054570	.	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-1.112;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chrX	50056814	rs5915179	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	50121146	rs11415594	A	AG	3059.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	50146956	rs41315078	A	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chrX	50165595	rs72026364	AAC	A	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chrX	50341598	rs2295544	G	A	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chrX	50341675	rs2295543	G	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	50350674	rs3747282	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chrX	50350728	rs143151534	T	TTCC	868.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.817;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:60,27:0.31:87
chrX	50350758	rs201922875	C	CTGCTGCTGCTGT	1568.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chrX	50648880	.	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-0.359;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:100,24:0.19:124
chrX	51075841	rs2625875	A	G	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.780;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-12.784;QD=0.78;ReadPosRankSum=5.357;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:342,63:0.16:405
chrX	51075901	rs2801627	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-3.493;QD=0.24;ReadPosRankSum=-2.310;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:232,35:0.13:267
chrX	51239295	.	ATCCTCGAGGCAGCC	A	10555.73	.	AC=2;AF=1.00;AN=2;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chrX	51486659	rs974285	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chrX	51637471	rs12837412	C	T	1020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.702;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:138,62:0.31:200
chrX	51637551	rs12835969	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.034;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:78,21:0.21:99
chrX	51641607	rs35559927	C	T	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.545;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chrX	51645065	rs35860208	G	C	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chrX	52825471	rs2806837	A	G	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chrX	52825546	rs2806838	C	G	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chrX	52847082	rs56238660	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chrX	52891492	rs114794367	T	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chrX	52891512	rs78471253	AC	TT	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.385;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=7.475;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.214;QD=17.52;ReadPosRankSum=-0.507;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chrX	52891523	rs75536354	G	T	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.469;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.261;QD=14.54;ReadPosRankSum=0.731;SOR=2.034;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chrX	52891542	rs78672295	A	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chrX	52891565	rs79831867	A	G	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chrX	52891584	rs5943751	C	A,T	2893.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=94;set=Intersection	GT:AF:DP	1/2:0.44,0.56:91
chrX	52891619	.	GT	G	1942.73	.	AC=1;AF=0.500;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	0/1:81,57:0.41:138
chrX	52891645	rs75808475	A	G	2507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.750;QD=14.50;ReadPosRankSum=1.071;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:104,69:0.40:173
chrX	52891653	rs73206488	C	T	2462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.831;QD=13.46;ReadPosRankSum=1.837;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:114,69:0.38:183
chrX	52891732	rs201414570	G	A	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=8.380;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.460;QD=11.91;ReadPosRankSum=0.746;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:115,58:0.34:173
chrX	52891736	rs75971120	G	T	2108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=8.459;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.376;QD=12.55;ReadPosRankSum=-0.081;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:109,59:0.35:168
chrX	52891738	rs79449844	CA	TG	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=8.630;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.439;QD=12.83;ReadPosRankSum=0.515;SOR=1.331;set=HC	GT:AD:AF:DP	0/1:109,56:0.34:165
chrX	52891818	rs73488230	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chrX	52891832	rs66491662	CT	C	263.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chrX	52895579	.	GGTGT	G,GGT	2163.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;QD=30.48;SOR=1.276;set=HC	GT:AD:AF:DP	1/2:0,12,59:0.17,0.83:71
chrX	52895605	.	TGC	T	409	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=2;MGOF=19;MMLQ=28;MQ=60.38;NF=3;NR=36;PP=409;QD=10.5641025641;SC=TGTGTGTGTGTGCAGATAAAA;SbPval=0.54;Source=Platypus;TC=41;TCF=3;TCR=38;TR=39;WE=52895614;WS=52895595;set=Platypus	GT:AD:AF:DP	1/0:2,39:0.95:41
chrX	53222043	rs146836963	A	AC	117.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	53225751	rs1536247	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	53228148	rs1977364	C	A	10670.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chrX	53265835	rs2296541	T	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	53271147	rs2274307	T	G	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	53280421	rs7886988	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	53436232	rs1264008	G	T	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chrX	53449336	rs11462431	A	AG	1049.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	53449568	rs1264011	G	A	6355.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chrX	53457622	rs1264013	T	C	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chrX	53461359	rs1264014	G	C	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chrX	53563589	rs426298	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	53566593	rs111723336	C	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.106;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chrX	53601990	rs35473057	A	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	53629649	.	AAT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-1.189;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:57,7:0.11:64
chrX	53641647	rs6638360	T	C	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	53652844	rs198501	G	A	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.56;QD=42.21;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	53652852	.	T	TGCCGGG	4632.73	.	AC=2;AF=1.00;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	53655415	.	TA	T	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.955;QD=4.08;ReadPosRankSum=-1.023;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chrX	53659047	rs6638409	C	T	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	53964588	rs41306892	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chrX	53966565	rs145977200	C	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chrX	53966984	rs7886772	G	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chrX	53989230	rs41315088	C	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chrX	54028839	rs112731110	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chrX	54107692	rs2516098	T	C	11027.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chrX	54117740	rs2495797	C	A	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	54161859	rs4826523	C	T	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	54209387	rs2495783	A	G	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	54280277	rs3021284	A	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chrX	54569354	rs188507576	C	T	2182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=1.940;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:123,107:0.47:230
chrX	54781359	rs34779123	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	54781530	rs17316491	C	G	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chrX	54800637	rs35679081	CA	C	871.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.735;QD=8.55;ReadPosRankSum=0.704;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:26,76:0.75:102
chrX	54835686	rs41309825	G	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:113,47:0.29:160
chrX	54836361	rs1043031	A	G	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:79,53:0.40:132
chrX	54836505	rs1043034	A	G	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:135,87:0.39:222
chrX	54837340	rs1043044	C	T	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chrX	54838077	rs2071932	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:83,37:0.31:120
chrX	54838437	rs2071934	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chrX	54840013	rs763183	C	T	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.618;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:120,38:0.24:158
chrX	54953647	rs2273138	G	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chrX	54975785	rs143124713	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chrX	55102354	.	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.066;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chrX	55116466	rs1845444	C	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	55173732	rs11327722	TA	T	10836.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chrX	55246965	rs5914272	C	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chrX	55247030	rs5914273	C	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	55248320	rs5914274	G	A	5744.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:139,278:0.67:417
chrX	55248376	rs5914275	A	G	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,56:0.37:150
chrX	55249049	rs2148982	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:120,64:0.35:184
chrX	55286887	rs3761559	G	T	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chrX	55287031	rs3761560	T	G	6093.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:173,285:0.62:458
chrX	55289593	rs2148981	C	T	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chrX	55289774	rs4826381	T	C	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	55479299	rs11545211	G	A	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:62,98:0.61:160
chrX	55479584	.	G	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.524;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chrX	55514818	rs3126255	C	T	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:249,118:0.32:367
chrX	55651001	rs2375465	T	C	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	55748820	rs1473761	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	55757744	rs5960480	T	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	56291516	rs1033565	T	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chrX	56291853	rs146429909	A	G	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:364,228:0.39:592
chrX	56295245	rs3747284	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chrX	56295438	rs59394346	AAC	A	2288.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chrX	56295958	rs200952140	ATG	A	711.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chrX	56296488	rs12862304	G	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chrX	56296780	.	A	AACACAC	504.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=42.06;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	57405163	rs4826543	T	C	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chrX	57474943	rs1821118	A	T	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chrX	57475132	rs1367830	T	C	12884.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chrX	57619648	rs1057328	G	T	11370.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:3,411:0.99:414
chrX	62917079	.	C	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-1.782;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:195,33:0.14:228
chrX	62974288	.	A	AT	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DP=810;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-1.570;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:556,106:0.16:662
chrX	63557104	rs41305415	T	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chrX	63580270	rs60554048	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.172;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chrX	64771695	.	G	A	4387.77	.	AC=1;AF=0.500;AN=2;DP=390;set=Intersection	GT:AD:AF:DP	0/1:176,213:0.55:389
chrX	65382685	rs5919015	T	C	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.339;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:45,57:0.56:102
chrX	65390966	rs5965106	C	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chrX	65392181	rs5964495	T	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;MQ=59.89;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chrX	65393658	rs5918591	A	G	8370.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chrX	65408445	rs6624875	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chrX	65415174	rs2206203	T	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chrX	65420609	rs1264215	A	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chrX	65427040	rs806607	T	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=1.595;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:42,45:0.52:87
chrX	65427124	rs809363	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:85,59:0.41:144
chrX	65478922	rs11433175	T	TA	99.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chrX	65486172	rs2054180	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:96,63:0.40:159
chrX	65819223	rs4827499	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chrX	65819286	rs11379040	G	GT	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chrX	65822607	rs1385698	T	C	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	65824986	rs1385699	C	T	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:93,122:0.57:215
chrX	66765158	.	T	TGCAGCA,TGCAGCAGCAGCAGCAGCAGCA,TGCA	3368.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=107;set=Intersection	GT:AF:DP	1/2:0.53,0.45:49
chrX	66766356	.	TGGCGGCGGCGGC	T	1305.73	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chrX	66941597	rs1337076	T	G	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	67331930	.	CAGAG	C,CAG	1759.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=45.12;SOR=1.552;set=HC	GT:AD:AF:DP	1/2:0,10,29:0.26,0.74:39
chrX	67331934	rs5918812	G	C	764.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chrX	67412906	rs1191948	G	A	8587.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chrX	67429834	rs57516402	CT	C	1945.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.682;QD=15.82;ReadPosRankSum=-0.602;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:10,113:0.92:123
chrX	67431814	rs2225124	A	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	67719085	rs12843249	G	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chrX	67741418	.	AT	A	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.599;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chrX	68381264	rs11539157	C	A	6981.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:392,338:0.46:730
chrX	68381787	rs5937160	C	T	4144.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:180,186:0.51:366
chrX	68381912	rs3761646	G	A	6078.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:246,281:0.53:527
chrX	68382836	rs7067170	G	A	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:160,137:0.46:297
chrX	68424640	.	T	TTCTC	1195.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.20;QD=42.70;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	68424753	rs5937177	G	A	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=-2.268;QD=7.03;ReadPosRankSum=0.015;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:78,55:0.41:133
chrX	68725640	rs1171942	T	C	6735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.082;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=12.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.471;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:472,333:0.41:805
chrX	68749098	rs56145324	G	A	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:57,67:0.54:124
chrX	68749379	rs35383499	G	A	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chrX	68890248	rs5936723	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chrX	68890298	rs5980833	C	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chrX	69080840	rs1203003	G	A	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chrX	69243118	rs2274469	T	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chrX	69247896	rs10579679	CCT	C	507.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chrX	69249513	rs62604271	G	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:70,49:0.41:119
chrX	69262423	rs2296767	T	C	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	69368853	rs650028	T	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chrX	69459945	rs1152194	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chrX	69489155	rs41303717	G	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:57,81:0.59:138
chrX	69496228	rs1572732	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chrX	69500857	rs186127204	G	C	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chrX	69502054	rs5936549	A	G	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chrX	69502479	rs1626469	A	G	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:167,113:0.40:280
chrX	69504073	rs2275412	T	C	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.08;ReadPosRankSum=1.167;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:31,43:0.58:74
chrX	69504078	rs12556489	T	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=1.833;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chrX	69507937	rs150473301	C	T	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:142,108:0.43:250
chrX	69510335	rs1199470	C	T	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	69572242	rs1199428	G	A	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chrX	69607212	.	C	CT	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.302;QD=5.19;ReadPosRankSum=2.050;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:63,42:0.40:105
chrX	69626739	rs10482161	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chrX	69637865	rs5980934	G	T	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:242,192:0.44:434
chrX	69639698	rs1886892	G	T	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chrX	69639832	rs5980700	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chrX	69645230	rs45513993	C	T	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:169,192:0.53:361
chrX	69645372	rs5980938	G	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chrX	69645983	rs73216706	A	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:127,89:0.41:216
chrX	69647169	rs5980939	T	C	6675.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:341,323:0.49:664
chrX	69652762	rs2296542	A	G	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chrX	69668463	rs2281868	A	G	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:180,162:0.47:342
chrX	69672655	rs12010766	T	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chrX	69673464	rs28391150	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chrX	69673811	rs2274309	T	C	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chrX	69713176	.	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=0.838;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:159,31:0.16:190
chrX	69718314	rs1886890	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chrX	69718533	rs3215810	CTCAT	C	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chrX	69749852	rs1536250	AT	GA	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chrX	69774517	rs4844240	A	T	6625.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chrX	69844797	rs1325094	G	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chrX	69844799	rs5980983	T	C	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chrX	69890179	rs5980996	T	A	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:130,151:0.54:281
chrX	69964084	rs5902674	G	GA	298.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chrX	70080911	rs11363600	CT	C	212.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-0.000;QD=13.30;ReadPosRankSum=-1.383;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chrX	70093038	rs5937008	C	T	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:76,115:0.60:191
chrX	70146398	rs4360450	A	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chrX	70148927	rs5936605	T	A	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chrX	70149360	rs5936606	G	A	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	70149404	rs5936607	C	T	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:97,80:0.45:177
chrX	70282696	rs34211894	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chrX	70321631	rs5980742	T	G	3547.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:194,164:0.46:358
chrX	70324157	rs1130009	C	T	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:162,139:0.46:301
chrX	70324397	rs12857595	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chrX	70339498	rs12850852	C	T	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chrX	70340738	rs4844282	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chrX	70341122	.	T	TACTTTATCTGCTTC	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.264;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chrX	70341169	rs62609586	A	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,39:0.36:107
chrX	70342820	rs7053139	A	G	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:171,154:0.47:325
chrX	70343621	rs12841977	A	G	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:137,91:0.40:228
chrX	70344331	rs59024650	G	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chrX	70344763	rs5030616	G	T	5718.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:318,310:0.49:628
chrX	70345683	rs73214869	T	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,67:0.47:142
chrX	70348344	rs5030618	G	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:87,51:0.37:138
chrX	70349947	rs5030619	A	C	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:172,120:0.41:292
chrX	70352417	rs10521349	T	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chrX	70352516	rs12843026	A	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chrX	70352617	.	CCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT	C	1193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.907;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=8.941;MLEAC=1;MLEAF=0.500;MQ=62.26;MQRankSum=2.021;QD=28.42;ReadPosRankSum=-0.263;SOR=1.836;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chrX	70354102	rs200721936	C	A	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=6.133;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.059;QD=9.82;ReadPosRankSum=0.409;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:44,41:0.48:85
chrX	70355258	rs34862123	CTT	C	616.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chrX	70361608	rs7056408	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chrX	70361651	.	C	CA	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.026;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chrX	70361967	rs36072155	G	A	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:246,200:0.45:446
chrX	70469182	rs2341539	G	A	10457.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chrX	70516476	.	G	C	2066.77	.	AC=1;AF=0.500;AN=2;DP=185;set=Intersection	GT:AD:AF:DP	0/1:89,96:0.52:185
chrX	70586435	.	C	T	442.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chrX	70595269	rs73217060	G	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,43:0.50:86
chrX	70613074	rs201372159	TTG	T	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-1.166;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:78,14:0.15:92
chrX	70617443	rs5980760	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	71349753	rs12397326	G	A	3929.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:235,179:0.43:414
chrX	71349774	rs12393722	T	C	5094.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:299,238:0.44:537
chrX	71350133	rs6624595	T	G	4010.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:168,178:0.51:346
chrX	71351443	rs62614085	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chrX	71352187	rs7471996	C	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chrX	71354684	rs6625946	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chrX	71357093	rs6625949	G	A	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	71357160	rs6625950	G	T	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	71363415	rs6624597	C	T	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chrX	71364479	rs11094247	A	C	7692.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,276:1.00:277
chrX	71379702	rs7884806	T	C	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:179,156:0.47:335
chrX	71379853	rs7880917	C	T	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:105,93:0.47:198
chrX	71379881	rs6624600	G	A	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:82,100:0.55:182
chrX	71380152	rs7881332	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chrX	71401607	rs6525589	G	A	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	71401614	rs7058353	C	A	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	71406301	rs6525591	T	C	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:94,99:0.51:193
chrX	71493691	rs7580	C	T	3942.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:225,183:0.45:408
chrX	71495344	rs3827426	C	T	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:192,154:0.45:346
chrX	71495388	rs34563981	T	TCTA	6216.73	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:229,163:0.42:392
chrX	71495869	rs3747303	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chrX	71518799	rs5958780	G	T	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:171,157:0.48:328
chrX	71521867	rs3012627	G	C	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:174,127:0.42:301
chrX	71549512	rs660392	G	C	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:119,111:0.48:230
chrX	71570963	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.310;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chrX	71813191	rs200569284	C	CT	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.937;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:51,38:0.43:89
chrX	71896110	rs376378016	CAT	C	105.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chrX	71933512	.	TCACA	T,TCA	8577.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.297;QD=23.06;ReadPosRankSum=0.330;SOR=0.664;set=HC	GT:AD:AF:DP	1/2:31,80,261:0.22,0.70:372
chrX	72223371	.	A	G	1444.77	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	72433663	rs369450592	GTCC	G	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=4.998;QD=1.59;ReadPosRankSum=0.213;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:314,38:0.11:352
chrX	72434238	.	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DP=1565;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.15;ReadPosRankSum=0.823;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:1377,180:0.12:1557
chrX	72797179	rs112789730	T	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chrX	73042316	rs16992436	T	C	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:124,127:0.51:251
chrX	73042607	rs41306111	C	T	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:74,91:0.55:165
chrX	73043144	rs375977945	CT	C	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-1.072;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:17,39:0.70:56
chrX	73043659	rs201836793	TG	T	3802.73	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:118,122:0.51:240
chrX	73043817	rs1620574	T	C	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:126,114:0.47:240
chrX	73045809	rs16992442	T	C	4218.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:231,197:0.46:428
chrX	73046557	rs16992443	G	T	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:95,104:0.52:199
chrX	73047569	rs73486505	C	T	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:93,104:0.53:197
chrX	73047926	rs199953543	TA	T	221.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chrX	73062455	rs112769630	A	G	6215.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:301,305:0.50:606
chrX	73062468	rs112527404	T	C	5927.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:276,272:0.50:548
chrX	73062661	rs61741568	A	G	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:91,131:0.59:222
chrX	73062694	rs41310673	A	T	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:89,123:0.58:212
chrX	73066891	rs6527	C	A	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:136,137:0.50:273
chrX	73067146	.	A	C	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.816;ClippingRankSum=0.000;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.513;QD=2.34;ReadPosRankSum=-0.566;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:304,82:0.21:386
chrX	73067239	.	CT	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=5.741;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.891;QD=1.06;ReadPosRankSum=-0.466;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:107,32:0.23:139
chrX	73067496	rs11553101	T	C	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:73,71:0.49:144
chrX	73068431	rs73486576	A	C	4065.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:161,189:0.54:350
chrX	73068498	rs371789423	G	A	3988.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:148,174:0.54:322
chrX	73070250	rs113875722	C	T	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,72:0.47:154
chrX	73071141	rs41305409	C	G	4395.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:259,215:0.45:474
chrX	73749319	rs5937843	T	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	74332585	rs4148838	G	GT	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:4,65:0.94:69
chrX	74375871	rs1039123	G	C	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	74376420	rs5981325	C	T	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chrX	74494470	rs4892396	T	G	12526.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chrX	74494483	rs5981831	A	G	10827.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chrX	74511202	rs5981834	G	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	74523367	rs972561	A	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	74598903	rs5937369	G	A	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	74725731	rs375928093	TGA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.067;QD=0.22;ReadPosRankSum=-2.436;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:262,27:0.09:289
chrX	74961467	.	G	A	7862.77	.	AC=1;AF=0.500;AN=2;DP=732;set=Intersection	GT:AD:AF:DP	0/1:355,375:0.51:730
chrX	74961968	rs5938183	G	A	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chrX	75395172	rs2301863	T	C	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	75395187	rs2301862	C	T	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	76139959	rs232961	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	76849085	rs45612438	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chrX	77086467	rs201564456	TTTTTATTTTATTTTATTTTA	T	344.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chrX	77150745	.	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:56,68:0.55:124
chrX	77296047	rs5913631	G	C	6856.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chrX	77298857	rs4826245	G	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	77528317	rs320995	G	A	10049.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chrX	77913494	rs41306247	C	T	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:120,125:0.51:245
chrX	77913767	.	G	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=8.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-0.274;SOR=1.344;set=HC	GT:AD:AF:DP	0/1:194,28:0.13:222
chrX	78426471	rs3810712	C	T	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chrX	78426488	rs3810711	T	C	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chrX	78426988	rs3827440	T	C	11580.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chrX	78617053	rs1736662	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chrX	78617999	rs1751133	T	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chrX	78618050	rs1751134	A	G	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:88,88:0.50:176
chrX	78618841	rs3761590	C	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chrX	79698593	rs1113265	C	G	11345.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:1,397:1.00:398
chrX	79937084	rs3122406	G	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	79942599	rs3029738	GTATA	G	1938.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;QD=42.15;SOR=5.186;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	79943569	rs3122407	T	C	10282.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chrX	79999796	rs58601634	T	TCAC	3143.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	80064910	rs200402115	A	AC	5492.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:10,197:0.95:207
chrX	80457914	rs35063255	A	AT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.372;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.548;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chrX	80532774	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.400;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:67,10:0.13:77
chrX	82764040	rs5921978	A	G	18532.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=44.55;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chrX	82764040	.	AGG	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=59.93;NF=212;NR=167;PP=2947;QD=20;SC=GCAGGTTCGAAGGCTTGCAGC;SbPval=0.52;Source=Platypus;TC=394;TCF=220;TCR=174;TR=379;WE=82764050;WS=82764030;set=Platypus	GT:AD:AF:DP	1/1:15,379:0.96:394
chrX	82764042	rs5921979	G	C	18532.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=44.66;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chrX	83119939	rs5922000	T	C	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	83124802	rs5968237	A	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chrX	83442983	.	CCCGCCGCCGCCG	C	4107.73	.	AC=2;AF=1.00;AN=2;DP=208;set=Intersection	GT:AD:AF:DP	1/1:3,96:0.97:99
chrX	83588660	rs5922965	A	G	97.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chrX	84189813	rs6623210	A	G	5678.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:235,259:0.52:494
chrX	84258843	rs3747422	C	G	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	84309549	rs66517260	TATTG	T	490.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	84349807	rs4828124	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	84350010	rs4828326	A	G	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chrX	84350128	rs4828327	G	T	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	84358864	rs5922146	C	T	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chrX	84363140	rs10126146	A	G	8368.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chrX	84520143	rs72549428	A	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:90,74:0.45:164
chrX	84534383	rs2227090	A	C	2420.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=12.836;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=1.630;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:15,145:0.91:160
chrX	84537132	rs151042142	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chrX	84561305	.	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.27;ReadPosRankSum=-1.145;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:161,22:0.12:183
chrX	84563135	rs363774	T	A	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chrX	85236824	.	T	TA	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=4.06;ReadPosRankSum=1.198;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chrX	85994683	rs6623765	G	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chrX	86070935	rs3761542	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chrX	86071151	rs12837683	C	G	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=0.962;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:35,56:0.62:91
chrX	86869103	rs5924064	A	G	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:97,128:0.57:225
chrX	86869348	rs5922464	C	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chrX	86872866	rs5924069	G	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chrX	86877348	rs2273050	G	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:163,90:0.36:253
chrX	86887244	rs222084	C	T	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	88008423	rs5940915	A	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	88009322	rs5984613	A	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	89177024	rs5983979	A	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	89177673	rs2290380	G	A	11821.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chrX	91066106	rs147052878	G	C	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.301;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=6.358;MLEAC=1;MLEAF=0.500;MQ=41.49;MQRankSum=-0.883;QD=9.83;ReadPosRankSum=1.123;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:46,31:0.40:77
chrX	91066365	rs200537802	G	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:95,39:0.29:134
chrX	91147703	rs35310035	A	AT	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-1.473;QD=7.34;ReadPosRankSum=-0.116;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chrX	91456467	rs4252207	C	A	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:280,190:0.40:470
chrX	91518011	.	CAA	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=1.269;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chrX	92927634	rs1045686	G	C	5111.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:150,216:0.59:366
chrX	96171416	rs56682273	G	GT	360.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.623;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chrX	96194485	rs11795730	A	G	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	96194489	.	A	ATATATATATATATG	101	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	96196880	rs1494130	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	96196979	.	T	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=6.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=1.247;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chrX	96196979	.	TTA	CTG	268	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=24;MQ=60.0;NF=6;NR=6;PP=268;QD=26.7889895719;SC=ATCTGCATGGTTAGAAAGGCA;SbPval=0.19;Source=Platypus;TC=49;TCF=33;TCR=16;TR=12;WE=96196989;WS=96196969;set=Platypus	GT:AD:AF:DP	1/0:37,12:0.24:49
chrX	96196981	.	A	G	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=6.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.786;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chrX	96197175	rs5920973	G	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	96213213	rs5966792	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	96328148	rs5921296	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-0.163;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chrX	96502650	rs1409192	C	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chrX	96684809	rs375312429	CA	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.511;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chrX	96724467	rs6620284	C	T	191.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chrX	99661969	rs1953337	G	A	4585.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:337,233:0.41:570
chrX	99849017	rs2073162	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:113,77:0.41:190
chrX	99849051	rs2073163	T	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:75,50:0.40:125
chrX	99919733	rs2022475	G	A	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	99924401	rs201768337	G	C	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=1.856;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chrX	99930886	rs10623103	T	TAC	239.79	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chrX	99930892	rs4828041	T	C	1162.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	99936147	rs4828043	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chrX	99941705	rs2022039	T	C	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chrX	99943244	rs5921627	G	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chrX	99956157	rs5967170	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chrX	100075741	rs2859166	T	G	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=-0.040;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chrX	100075747	rs2859167	T	C	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.98;ReadPosRankSum=-0.008;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chrX	100077193	rs2859168	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chrX	100087557	rs5921665	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chrX	100098355	rs148448908	TAAG	T	1985.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chrX	100105418	rs5921669	A	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:44,69:0.61:113
chrX	100212525	rs6616208	T	C	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chrX	100242305	rs5921702	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	100243459	rs3934462	G	T	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chrX	100245606	rs6523438	A	G	9169.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:1,356:1.00:357
chrX	100275573	rs151051208	C	A	4179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=1.536;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:98,191:0.66:289
chrX	100357194	rs12156858	C	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=-0.049;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chrX	100357201	rs12156663	T	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=0.443;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chrX	100357417	rs59141949	CT	C	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chrX	100375370	rs56066672	TA	T	901.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,38:0.36:106
chrX	100375865	rs368295326	CT	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=7.356;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-1.149;QD=1.51;ReadPosRankSum=0.993;SOR=1.673;set=HC	GT:AD:AF:DP	0/1:59,26:0.31:85
chrX	100387337	rs7883144	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chrX	100395547	rs2273379	T	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chrX	100395663	rs2273380	G	T	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:196,133:0.40:329
chrX	100400023	rs2295376	A	G	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:97,59:0.38:156
chrX	100416623	rs72615569	A	T	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chrX	100547933	rs5951328	A	G	7055.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chrX	100604757	rs700	T	G	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	100609547	rs2071223	G	A	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chrX	100615023	rs2746110	T	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chrX	100617372	rs2071222	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	100666907	rs372055912	CT	C	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.795;QD=1.17;ReadPosRankSum=0.378;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:246,75:0.23:321
chrX	100742551	rs2361298	G	A	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chrX	100743037	rs963618	C	T	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	100743826	rs5951332	A	G	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	100745825	rs5951333	T	C	8699.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chrX	100748078	rs5991911	A	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	100749038	rs34379067	C	T	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=12.093;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=0.999;QD=11.38;ReadPosRankSum=-1.220;SOR=2.275;set=HC	GT:AD:AF:DP	0/1:79,54:0.41:133
chrX	100749041	.	A	G	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.551;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=11.729;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=0.718;QD=11.13;ReadPosRankSum=-1.127;SOR=2.091;set=HC	GT:AD:AF:DP	0/1:82,51:0.38:133
chrX	100749050	rs190396007	C	T	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.085;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=18.030;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-0.277;QD=9.65;ReadPosRankSum=-2.154;SOR=3.852;set=HC	GT:AD:AF:DP	0/1:86,42:0.33:128
chrX	100749065	rs183076981	A	G	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.800;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=5.286;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-2.158;QD=8.26;ReadPosRankSum=-2.526;SOR=1.703;set=HC	GT:AD:AF:DP	0/1:103,30:0.23:133
chrX	100749071	.	G	A	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-5.707;QD=5.55;ReadPosRankSum=-3.852;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:114,34:0.23:148
chrX	100749089	.	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-7.307;QD=1.82;ReadPosRankSum=-3.329;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:128,22:0.15:150
chrX	100749127	rs5951336	A	G	3936.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=4.630;MLEAC=2;MLEAF=1.000;MQ=59.25;MQRankSum=12.329;QD=26.07;ReadPosRankSum=2.132;SOR=1.373;set=HC	GT:AD:AF:DP	1/1:1,150:0.99:151
chrX	100749585	rs3174476	C	T	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	100911066	rs3850315	C	T	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chrX	101092932	rs41306281	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chrX	101093048	rs66689050	GA	G	105	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.95;QD=26.25;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	101138792	rs5944882	T	C	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chrX	101141776	rs67953349	AC	A	985.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	101141793	rs5944778	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chrX	101395780	rs11408120	T	TG	9968.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chrX	101396231	rs200560038	C	T	10119.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:333,474:0.59:807
chrX	101437635	rs5945049	A	G	6731.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:274,328:0.54:602
chrX	101587709	.	CTCTCTCT	C	83.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.50;MQRankSum=1.150;QD=20.80;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chrX	101623586	.	ATGG	A,ATGGTGG	11297.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.76;MQRankSum=0.365;QD=32.56;ReadPosRankSum=-0.336;SOR=6.171;set=HC	GT:AD:AF:DP	1/2:8,276,63:0.80,0.18:347
chrX	102320931	rs11797182	A	G	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=18.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=3.184;SOR=4.271;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chrX	102332171	rs34811257	CT	C	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=1.353;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:27,37:0.58:64
chrX	102337866	.	G	A	683.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chrX	102339606	rs1029305	T	C	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	102471531	rs1064784	G	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	102564583	rs7557	A	G	6637.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chrX	102565203	rs2246252	G	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	102831217	rs221946	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	102841111	.	G	A	424.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chrX	102930960	rs874	A	G	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	102978965	rs12844618	T	G	4398.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:138,206:0.60:344
chrX	102979486	rs4907817	T	C	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	103031700	rs11371342	A	AG	1105.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=31.59;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	103036412	rs521895	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chrX	103080654	.	T	G	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-2.242;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:211,75:0.26:286
chrX	103267865	rs553509	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:142,65:0.31:207
chrX	103268241	rs7885967	G	A	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:194,146:0.43:340
chrX	103274226	rs494006	A	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chrX	103294760	rs2301384	C	T	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:149,80:0.35:229
chrX	103295543	rs3213517	A	C	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:93,118:0.56:211
chrX	103495088	.	GAG	CAC	313	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=1;MGOF=15;MMLQ=24;MQ=51.63;NF=3;NR=4;PP=313;QD=52.3525535517;SC=CCGGGTGGCAGAGGCGCCATG;SbPval=0.17;Source=Platypus;TC=34;TCF=7;TCR=27;TR=7;WE=103495098;WS=103495078;set=Platypus	GT:AD:AF:DP	1/0:27,7:0.21:34
chrX	104464276	rs375033944	CA	C	27038.73	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chrX	104464281	rs367644904	TC	T	27152.73	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chrX	105139356	.	C	CAGAA	3467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=8.869;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.634;QD=19.70;ReadPosRankSum=-0.563;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:82,94:0.53:176
chrX	105153001	rs209372	A	G	7978.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chrX	105192769	rs113490419	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=7.449;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.826;QD=0.90;ReadPosRankSum=0.931;SOR=1.472;set=HC	GT:AD:AF:DP	0/1:114,36:0.24:150
chrX	105279499	rs2234034	C	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chrX	106092450	.	AT	A	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.638;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chrX	106144537	rs55662019	A	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chrX	106184601	.	TGA	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=2.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.719;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chrX	106201494	rs17253746	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chrX	106201527	rs17253753	G	C	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chrX	106367699	.	TAAGAA	T	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=5.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.462;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chrX	107159171	.	A	G	666.77	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chrX	107328436	rs807178	G	A	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:101,74:0.42:175
chrX	107415825	rs2881142	T	C	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	107417730	rs5973851	G	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:159,124:0.44:283
chrX	107418281	rs2295914	C	T	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:45,106:0.70:151
chrX	107418906	rs4623610	A	G	8708.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chrX	107420287	rs2295915	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chrX	107423674	.	TACAC	T,TAC	3863.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;QD=33.89;SOR=1.458;set=HC	GT:AD:AF:DP	1/2:0,67,47:0.59,0.41:114
chrX	107430579	rs1266715	G	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chrX	107433688	rs1042065	A	G	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:108,138:0.56:246
chrX	107437848	rs1266719	G	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:104,102:0.50:206
chrX	107438119	rs1266720	G	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chrX	107448639	rs1266730	G	T	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:125,127:0.50:252
chrX	107450101	rs1266732	T	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chrX	107450163	rs41298506	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chrX	107455014	rs1266736	C	T	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	107463090	rs201304389	CCCATATTGTATT	C	1454.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chrX	107827760	.	GT	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.570;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chrX	107829773	rs2272944	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chrX	107834536	.	G	A	48.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chrX	107844758	rs61506795	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.70;ReadPosRankSum=-1.868;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chrX	107844780	rs28497884	A	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chrX	107845082	.	G	A	256.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chrX	107865279	.	GG	TT	161.77	.	AC=1;AF=0.500;AN=2;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chrX	107898824	rs56253633	A	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chrX	107918007	rs200814705	CT	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.887;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:63,27:0.30:90
chrX	107976940	rs1801164	G	C	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:197,120:0.38:317
chrX	107978342	rs80131334	TC	AT	7166.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;JOINED;set=Intersection	GT:AD:AF:DP	0/1:232,189:0.45:421
chrX	107979437	rs73253702	G	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:118,54:0.31:172
chrX	107979475	rs1801162	G	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:102,49:0.32:151
chrX	107979512	rs2073114	C	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:77,39:0.34:116
chrX	108636057	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-0.232;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:114,25:0.18:139
chrX	108638445	rs2076361	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chrX	108708516	rs502209	C	T	7151.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chrX	108708552	rs12008095	A	G	7961.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chrX	108904729	rs839408	C	T	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	108917757	rs5942830	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	108917773	rs5943413	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	108926670	.	G	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.131;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:130,25:0.16:155
chrX	109298414	rs12841904	G	A	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	109325486	rs5942887	T	C	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chrX	109387928	rs946820	G	A	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chrX	109416688	rs34813944	AT	A	1097.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.134;QD=7.73;ReadPosRankSum=-0.814;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:56,86:0.61:142
chrX	109419165	rs2795995	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,60:0.63:95
chrX	109931799	rs5943052	A	G	5178.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:174,232:0.57:406
chrX	109931856	rs5943053	T	C	5933.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:189,271:0.59:460
chrX	110388083	rs142890115	T	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:178,104:0.37:282
chrX	110416182	rs372455411	TTC	T	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.640;QD=1.43;ReadPosRankSum=-0.082;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:214,38:0.15:252
chrX	110970548	rs374618611	C	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,54:0.58:93
chrX	111698036	rs6568050	T	C	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:98,136:0.58:234
chrX	111698613	rs7053563	T	C	5583.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:143,237:0.62:380
chrX	111914244	rs7064462	A	G	3324.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:106,159:0.60:265
chrX	112022297	rs147791784	C	CAGG	3239.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:69,82:0.54:151
chrX	113949525	rs5988103	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chrX	113961410	rs2248440	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chrX	113965735	rs6318	G	C	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:204,129:0.39:333
chrX	114082535	rs5946005	G	A	2410.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:82,113:0.58:195
chrX	114400318	rs4361922	T	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	114424396	.	G	A	2116.77	.	AC=1;AF=0.500;AN=2;DP=273;set=Intersection	GT:AD:AF:DP	0/1:163,109:0.40:272
chrX	114424597	rs12009026	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:97,88:0.48:185
chrX	114425181	.	A	AGAGGCCGCTCGCCCAACGCCCACAGCG	8741.73	.	AC=2;AF=1.00;AN=2;DP=421;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chrX	114425195	.	C	CAACGCCCACAGCGGAGGCCGCTCGCCT	2970	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=24;MQ=60.02;NF=26;NR=36;PP=2970;QD=20;SC=GCCGCTCGCCCGACGCCCACA;SbPval=0.48;Source=Platypus;TC=207;TCF=83;TCR=124;TR=62;WE=114425203;WS=114425185;set=Platypus	GT:AD:AF:DP	1/0:145,62:0.30:207
chrX	114425400	rs12857270	G	A	13212.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chrX	114426171	rs5946294	C	T	15956.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:2,579:1.00:581
chrX	114426917	rs4911809	C	T	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chrX	114538046	rs2232733	T	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chrX	114871127	rs369715256	AT	A	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.854;QD=0.37;ReadPosRankSum=-1.720;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:119,25:0.17:144
chrX	115568092	rs2312054	A	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chrX	115575989	rs12391221	A	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chrX	115584402	rs6608646	C	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	115585678	rs12559530	C	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	115586700	rs10521578	A	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	117117398	rs368634632	GA	G	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.953;QD=1.43;ReadPosRankSum=-1.457;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chrX	117530912	.	GT	G	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=4.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.526;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chrX	117677349	rs1294781	G	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chrX	117677642	rs1294780	A	G	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chrX	117679234	rs55694052	CT	C	825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=1.828;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:52,55:0.51:107
chrX	117680173	.	C	CCAAAAAAAAAAAAA,CCAAAAAAA	256.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=23;set=Intersection	GT:AF:DP	0/1:0.72:18
chrX	117695200	rs5909545	G	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chrX	117700141	rs2286977	A	G	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:90,60:0.40:150
chrX	117718669	rs1781091	TT	AA	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=9.050;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-0.925;SOR=1.962;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chrX	117722176	rs41312765	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:75,78:0.51:153
chrX	117739421	rs62609953	G	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chrX	117742356	rs5910394	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:122,63:0.34:185
chrX	117810737	rs17331656	T	A	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:110,94:0.46:204
chrX	117810831	rs5957040	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chrX	117815650	rs2275917	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chrX	117817266	rs4372173	C	T	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	117819773	rs2379118	A	C	4954.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:282,235:0.45:517
chrX	117819902	rs2186106	A	G	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chrX	117874898	rs2246663	T	C	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	117892291	rs2997048	C	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chrX	117904185	rs2248849	A	G	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:210,194:0.48:404
chrX	117904229	rs2248846	T	C	7004.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:330,330:0.50:660
chrX	117904433	rs2248841	T	C	13937.77	.	AC=1;AF=0.500;AN=2;DB;DP=1239;set=Intersection	GT:AD:AF:DP	0/1:576,662:0.53:1238
chrX	117908115	.	CT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.539;QD=1.47;ReadPosRankSum=-0.695;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chrX	117910545	rs3121671	A	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.107;QD=16.14;ReadPosRankSum=-0.868;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chrX	117910551	rs3125163	G	A	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=0.200;QD=14.82;ReadPosRankSum=-0.722;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chrX	117925898	rs2495636	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chrX	117938928	rs2495639	G	A	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:138,104:0.43:242
chrX	118108785	rs3813933	T	C	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:199,215:0.52:414
chrX	118124694	rs3827453	G	C	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chrX	118143043	rs2168379	A	G	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:82,95:0.54:177
chrX	118146810	rs5910481	C	T	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,60:0.56:107
chrX	118147233	rs2290514	G	T	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chrX	118148229	rs2278954	A	G	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:202,176:0.47:378
chrX	118215229	rs10714793	CA	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=6.956;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.121;QD=3.67;ReadPosRankSum=-0.099;SOR=2.424;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chrX	118281538	rs5910522	C	A	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	118281635	rs11405916	G	GC	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	118284579	rs5957121	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	118533299	rs217975	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.615;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chrX	118533366	rs217976	G	A	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-1.973;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:37,38:0.51:75
chrX	118544448	rs16274	T	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	118560403	rs217997	G	C	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chrX	118585943	rs425331	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chrX	118587003	rs3810755	C	T	3168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=0.265;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:128,148:0.54:276
chrX	118603550	rs5910591	A	G	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:191,148:0.44:339
chrX	118603742	rs148294496	A	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-10.238;QD=0.44;ReadPosRankSum=3.327;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:179,16:0.08:195
chrX	118603747	rs141428607	A	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-10.043;QD=0.59;ReadPosRankSum=3.190;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:172,16:0.09:188
chrX	118603773	rs148920941	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-10.124;QD=0.65;ReadPosRankSum=1.431;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:166,17:0.09:183
chrX	118603844	rs371749	T	G	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:10,175:0.95:185
chrX	118604436	rs12390	T	C	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	118604536	rs5910592	C	T	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chrX	118604553	rs3216181	T	TA	2269.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	118678364	rs5910611	G	A	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	118699320	rs5910616	A	G	21592.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,799:1.00:799
chrX	118709567	rs139399184	T	TA	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.54;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	118737263	rs34571222	CA	C	203.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.680;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.693;QD=8.49;ReadPosRankSum=1.058;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chrX	118754064	rs59071899	CA	C	619.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.051;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,45:0.87:52
chrX	118758107	rs11338110	GT	G	957.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.645;QD=27.36;ReadPosRankSum=0.047;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:5,30:0.86:35
chrX	118758128	rs2782252	T	G	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.212;QD=11.69;ReadPosRankSum=-0.247;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chrX	118768971	rs56090830	CA	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=10.447;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.144;QD=3.32;ReadPosRankSum=0.387;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chrX	118783881	rs6603539	G	A	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:199,162:0.45:361
chrX	118787022	rs5957203	A	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chrX	118827317	rs17261138	A	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chrX	118829518	.	A	G	5008.77	.	AC=1;AF=0.500;AN=2;DP=454;set=Intersection	GT:AD:AF:DP	0/1:221,229:0.51:450
chrX	118892888	rs2782222	G	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chrX	118893054	rs2782223	C	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:123,63:0.34:186
chrX	118893137	rs2782224	T	C	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=1.107;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:120,71:0.37:191
chrX	118893413	rs2782225	T	C	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:107,103:0.49:210
chrX	118920809	rs7885997	C	T	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:109,124:0.53:233
chrX	118921215	rs45555441	G	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chrX	118921530	rs73214964	A	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chrX	118925181	rs41304508	C	A	10300.77	.	AC=1;AF=0.500;AN=2;DB;DP=1125;set=Intersection	GT:AD:AF:DP	0/1:611,512:0.46:1123
chrX	118925705	rs2240448	C	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chrX	118969075	rs2239963	A	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chrX	118974507	rs2285552	A	C	7388.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:311,344:0.53:655
chrX	118977332	rs2496213	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chrX	118985598	rs2428212	C	T	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:80,84:0.51:164
chrX	118985711	rs373850121	CT	C	792.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.842;QD=13.44;ReadPosRankSum=0.765;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:8,51:0.86:59
chrX	119007509	.	C	CT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=11.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.749;SOR=0.087;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chrX	119053358	.	G	T	1560.77	.	AC=1;AF=0.500;AN=2;DP=129;set=Intersection	GT:AD:AF:DP	0/1:55,73:0.57:128
chrX	119387833	rs201958171	C	CTGA	7602.73	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:205,190:0.48:395
chrX	119394904	rs3752341	G	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chrX	119402264	rs41300936	A	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chrX	119421166	.	AC	A	102.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.070;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.881;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chrX	119421167	rs45453700	C	A	497.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chrX	119421168	.	AC	A	102.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=1.461;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chrX	119427747	rs72607685	A	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chrX	119438372	rs41310458	T	G	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:93,112:0.55:205
chrX	119445015	rs3810749	C	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chrX	119504439	rs2075099	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:29,45:0.61:74
chrX	119509541	rs5909706	A	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chrX	119510144	rs3213723	C	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	119510456	rs3213724	G	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chrX	119590533	rs12097	T	A	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.904;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chrX	119676896	.	GA	G	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=0.559;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chrX	119676964	.	A	G	459.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chrX	119677393	.	A	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=13.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.880;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chrX	119760629	rs17261572	A	T	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:183,160:0.47:343
chrX	119972052	rs5903581	C	CT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=7.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-1.090;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chrX	120008979	rs871733	T	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chrX	120181641	rs191769566	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chrX	120182026	.	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=4.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-2.020;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:66,11:0.14:77
chrX	121376242	rs1970367	A	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:72,55:0.43:127
chrX	122250996	rs6648942	G	T	6114.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:334,289:0.46:623
chrX	122318386	rs58044961	A	AG	7328.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	122319917	rs2269551	T	C	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chrX	122336448	rs2285127	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	122336600	rs11452643	T	TG	3187.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	122528803	rs550640	T	C	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.948;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chrX	122537277	rs502434	T	C	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:177,105:0.37:282
chrX	122537418	rs504096	C	T	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:137,80:0.37:217
chrX	122616962	.	C	CT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.034;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:75,25:0.25:100
chrX	122805421	rs2105889	C	A	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.022;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:200,62:0.24:262
chrX	123184949	.	CT	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=5.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.244;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chrX	123185116	.	CTT	C	2452.73	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:44,63:0.59:107
chrX	123204978	.	CT	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=5.974;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.101;QD=0.40;ReadPosRankSum=-1.402;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:245,54:0.18:299
chrX	123227777	.	A	G	1585.77	.	AC=1;AF=0.500;AN=2;DP=217;set=Intersection	GT:AD:AF:DP	0/1:134,78:0.37:212
chrX	123498120	rs12393085	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	123498355	rs55941348	C	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	123498362	rs60637596	GT	G	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.764;QD=9.99;ReadPosRankSum=-0.537;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chrX	123498379	rs57958188	C	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	123538802	rs34194370	T	TAAAC	9151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.384;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.202;QD=23.17;ReadPosRankSum=0.675;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:160,235:0.59:395
chrX	123554646	rs12013090	T	C	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:126,66:0.34:192
chrX	123587110	rs2223416	C	A	3631.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:110,156:0.59:266
chrX	123615545	.	G	GTATATATATATATA,GTATATATATATA	705.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=52;set=Intersection	GT:AF:DP	0/1:0.60:45
chrX	123615562	.	T	TA	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=-0.664;QD=6.03;ReadPosRankSum=-0.584;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chrX	123654641	rs112813437	TA	T	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.497;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chrX	125298873	.	G	A	4926.77	.	AC=1;AF=0.500;AN=2;DP=425;set=Intersection	GT:AD:AF:DP	0/1:190,235:0.55:425
chrX	125953932	rs5931715	A	G	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:117,77:0.40:194
chrX	125954753	rs41309538	C	T	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:168,185:0.52:353
chrX	125955428	rs2269777	G	A	4532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=1.843;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:257,227:0.47:484
chrX	125955644	rs2269776	A	T	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	127184993	rs732182	C	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chrX	128623962	.	TA	T	373.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chrX	128674631	.	T	TG	387.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chrX	128876224	.	G	A	515.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chrX	128880614	rs3747343	T	C	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	128885567	.	AAAGAAAGGAAGGAAGGAAGGAAGG	A	98.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=65.39;MQRankSum=0.590;QD=5.49;ReadPosRankSum=0.705;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chrX	128885573	.	AG	A	73.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.056;ClippingRankSum=-0.000;DP=60;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=65.39;MQRankSum=-0.343;QD=5.67;ReadPosRankSum=0.282;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chrX	128885576	.	AAGGAAGGAAGGAAGG	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=-0.000;DP=60;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=65.39;MQRankSum=-0.343;QD=5.59;ReadPosRankSum=0.205;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chrX	128889464	rs5932674	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	128925156	rs5932684	T	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chrX	128948893	rs5932686	T	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.85;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	128957640	rs2275605	T	C	7284.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chrX	129139006	rs143627371	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chrX	129147079	rs4830173	T	C	14820.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chrX	129149396	rs138477961	G	A	8077.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:294,349:0.54:643
chrX	129168426	rs183320708	C	T	8314.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:320,384:0.55:704
chrX	129205465	.	G	A	786.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chrX	129267464	.	TA	T	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.429;QD=6.66;ReadPosRankSum=-0.081;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:79,80:0.50:159
chrX	129269980	rs209998	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,54:0.56:96
chrX	129283520	rs1139851	A	G	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:150,167:0.53:317
chrX	129283661	rs150442514	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chrX	129289089	.	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=0.462;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:167,22:0.12:189
chrX	129290699	rs189994	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chrX	129349295	rs209238	T	G	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:71,99:0.58:170
chrX	129354240	rs1160681	C	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.246;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-0.783;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chrX	129354254	rs3081123	TAA	T	440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=-0.092;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chrX	129498836	rs2235800	T	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chrX	129505761	rs5930404	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chrX	129506685	rs7057748	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chrX	129506779	rs5932752	G	A	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chrX	129546260	.	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.95;MQRankSum=2.689;QD=1.31;ReadPosRankSum=-1.873;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chrX	130217020	rs5932835	G	C	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.864;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:48,32:0.40:80
chrX	130218451	rs9306826	G	A	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chrX	130219723	rs10521763	T	C	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:93,169:0.65:262
chrX	130220176	rs16999801	G	A	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:101,63:0.38:164
chrX	130222454	rs3859990	T	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	130416958	rs5932877	C	T	15153.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chrX	130420006	rs5930458	T	C	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	130420415	rs4495600	T	C	9320.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chrX	130423359	rs6637829	C	G	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:127,113:0.47:240
chrX	130423543	rs6637830	G	C	12443.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:1,454:1.00:455
chrX	130678467	rs499030	A	G	9381.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:249,388:0.61:637
chrX	130678596	rs17316625	C	G	15200.77	.	AC=1;AF=0.500;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	0/1:343,640:0.65:983
chrX	130678844	rs655415	A	C	9925.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:232,414:0.64:646
chrX	131203438	rs57609807	CATATATATATATATATAT	C	931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=7.258;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.582;QD=33.28;ReadPosRankSum=-0.534;SOR=2.153;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chrX	131212512	rs5977623	A	G	5212.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:143,219:0.60:362
chrX	131228271	rs5933067	C	G	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,62:0.67:92
chrX	131231430	rs57806249	T	TAC	791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=6.481;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.817;QD=12.57;ReadPosRankSum=1.762;SOR=0.206;set=HC	GT:AD:AF:DP	0/1:29,34:0.54:63
chrX	131234733	rs5930546	G	A	5695.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:169,256:0.60:425
chrX	131516423	rs5933151	T	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chrX	131518737	rs3736748	C	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chrX	131803352	rs10550199	ATC	A	1000.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	131803368	rs114281785	C	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.354;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=2.071;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chrX	132161673	rs41304540	C	T	9231.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chrX	132458578	rs66507215	CA	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=-1.645;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chrX	132888207	rs370737647	TA	T	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.940;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:57,34:0.37:91
chrX	133379551	rs2428577	C	T	11868.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chrX	133511862	.	T	TA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.991;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:95,24:0.20:119
chrX	133511988	rs5978001	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	133680547	rs757309	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	133921640	.	CT	C	152.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=2.232;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chrX	133948733	rs201263798	CA	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.093;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:98,33:0.25:131
chrX	133963268	rs45447592	C	T	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:175,215:0.55:390
chrX	134125475	rs11739	C	G	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	134156121	rs2475853	G	C	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:85,159:0.65:244
chrX	134185997	rs2498776	T	A	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:66,108:0.62:174
chrX	134257363	.	G	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=42.13;MQRankSum=-2.068;QD=5.05;ReadPosRankSum=1.469;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chrX	134257367	rs200493921	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.25;QD=33.19;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	134294325	rs3813155	A	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	134383054	rs199529580	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=49.79;MQRankSum=-2.067;QD=0.42;ReadPosRankSum=0.308;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:423,69:0.14:492
chrX	134483151	rs2286479	C	T	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:66,126:0.66:192
chrX	134493961	.	G	GA	178.73	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chrX	134655378	rs192219115	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chrX	134686223	rs17001019	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chrX	134703108	rs1937729	T	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chrX	134708007	rs72290283	C	CT	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.714;QD=1.54;ReadPosRankSum=-0.776;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:146,42:0.22:188
chrX	134713861	rs2298302	C	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:253,102:0.29:355
chrX	134714962	rs5975545	T	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chrX	134948034	rs2034920	A	G	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:45,102:0.69:147
chrX	134978425	rs5930805	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chrX	134978682	.	A	ATTTAT	150.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chrX	134986700	rs12014884	T	C	4330.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:343,233:0.40:576
chrX	134986768	rs377366296	A	G	5593.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.045;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=4.828;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.683;QD=14.68;ReadPosRankSum=0.134;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:227,154:0.40:381
chrX	134986769	rs373579002	ATT	A	5578.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.861;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=7.421;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.241;QD=15.12;ReadPosRankSum=0.652;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:223,146:0.40:369
chrX	134986772	rs370382498	C	G	5382.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.487;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=8.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=0.963;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:219,145:0.40:364
chrX	134986775	.	CCA	C	5352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.424;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=5.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=0.899;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:213,141:0.40:354
chrX	134986780	rs202237401	A	T	5283.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=0.752;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:196,136:0.41:332
chrX	134986781	.	G	GTATGTC	5161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.122;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=0.898;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:196,135:0.41:331
chrX	134986870	rs12014949	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,36:0.44:82
chrX	134988393	rs5930814	T	A	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:129,127:0.50:256
chrX	134990000	rs41301507	C	T	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:187,91:0.33:278
chrX	134990944	rs5974569	T	C	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:184,118:0.39:302
chrX	134991078	rs5974570	A	G	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:441,209:0.32:650
chrX	134994005	rs4829799	T	C	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:78,64:0.45:142
chrX	135055694	rs6635201	T	C	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:31,82:0.73:113
chrX	135056133	rs3747460	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:127,77:0.38:204
chrX	135056299	rs5974575	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chrX	135080623	rs370833071	C	CT,CTT	2089.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=1.387;SOR=0.697;set=HC	GT:AD:AF:DP	1/2:23,90,29:0.63,0.20:142
chrX	135095627	rs2291639	C	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.095;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chrX	135104682	rs6654309	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chrX	135104864	rs6654310	G	A	2961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=0.535;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:282,168:0.37:450
chrX	135112193	rs2279595	T	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chrX	135112228	rs10521848	T	C	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-1.470;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:40,36:0.47:76
chrX	135122262	rs2307131	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:115,56:0.33:171
chrX	135252234	rs3215593	AC	A	4409.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:68,140:0.67:208
chrX	135290250	rs2236003	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chrX	135292022	rs2076705	C	T	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.457;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.934;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chrX	135307049	rs5929742	G	A	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:80,108:0.57:188
chrX	135310785	rs2273221	T	C	4094.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:107,191:0.64:298
chrX	135313034	rs1055497	T	G	10043.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:277,446:0.62:723
chrX	135313185	rs34471049	CT	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=2.220;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chrX	135322440	rs5975706	A	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chrX	135323452	rs5975707	G	A	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:87,110:0.56:197
chrX	135338312	rs5975709	C	T	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:41,80:0.66:121
chrX	135390818	rs5930928	T	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.635;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chrX	135730555	rs1126535	T	C	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:99,164:0.62:263
chrX	135767763	.	C	CA	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=4.155;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.973;QD=5.02;ReadPosRankSum=0.065;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:53,53:0.50:106
chrX	135819719	rs561435	C	G	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	135827286	rs184656802	C	A	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:80,61:0.43:141
chrX	135956506	rs77794331	C	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=4.871;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-11.226;QD=0.35;ReadPosRankSum=1.219;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:225,31:0.12:256
chrX	135961585	.	A	AT	157.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.481;QD=0.67;ReadPosRankSum=-0.320;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:193,44:0.19:237
chrX	135961586	rs201673579	TG	T	85.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.662;QD=0.36;ReadPosRankSum=-0.017;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:197,42:0.18:239
chrX	135961587	rs2011584	G	T	3741.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.749;QD=15.66;ReadPosRankSum=-0.112;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:53,186:0.78:239
chrX	136113464	rs1190736	C	A	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:253,127:0.33:380
chrX	137749997	rs5976185	A	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	137790999	rs374452799	T	C	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:195,146:0.43:341
chrX	138067202	rs34825181	A	G	8781.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:255,404:0.61:659
chrX	138067368	rs5974786	G	A	3910.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:121,168:0.58:289
chrX	138633280	rs6048	A	G	6891.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:194,303:0.61:497
chrX	138667452	rs5909018	C	T	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chrX	138670026	rs367703808	TCA	T	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chrX	138679712	rs1051619	T	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:41,81:0.66:122
chrX	138689704	rs41300934	T	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chrX	138697246	rs2076501	A	C	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:48,86:0.64:134
chrX	138698652	rs68033160	GA	G	1619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.648;QD=27.45;ReadPosRankSum=0.588;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,43:0.73:59
chrX	138698665	rs5909056	T	C	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.641;QD=27.50;ReadPosRankSum=0.545;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:16,44:0.73:60
chrX	138713463	rs56186070	G	GT	2108.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:67,108:0.62:175
chrX	138724725	rs926563	G	A	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chrX	138774209	rs4824861	C	T	7477.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chrX	138811003	rs2094702	G	A	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	138814745	.	CA	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.705;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.699;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:52,23:0.31:75
chrX	138825675	rs1268015	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	138864932	.	G	GA	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=9.498;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.825;QD=2.04;ReadPosRankSum=1.443;SOR=0.210;set=HC	GT:AD:AF:DP	0/1:86,29:0.25:115
chrX	138882172	rs10717380	AC	A	972.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=8.348;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=11.05;ReadPosRankSum=0.678;SOR=0.151;set=HC	GT:AD:AF:DP	0/1:34,54:0.61:88
chrX	138897130	rs2491014	A	C	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chrX	138899005	rs12838569	G	A	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chrX	139099346	rs144430176	A	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chrX	139099360	.	T	TA	142.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chrX	139099377	.	A	G	253.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chrX	139099397	rs139444795	A	G	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chrX	139099429	rs5907565	T	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	139099699	rs5909001	C	T	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=13.900;MLEAC=1;MLEAF=0.500;MQ=51.95;MQRankSum=2.142;QD=23.99;ReadPosRankSum=0.177;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:4,23:0.85:27
chrX	139099828	rs5909002	T	A	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	139100148	rs181753036	A	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.50;QD=27.82;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	139100153	rs202135269	T	C	96.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=48.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	139298295	rs396467	C	T	8352.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:224,370:0.62:594
chrX	139298612	rs411420	T	C	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:128,64:0.33:192
chrX	140008385	rs5907732	G	T	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chrX	140008515	rs5907733	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	140270922	.	G	A	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.008;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:576,129:0.18:705
chrX	140271268	rs2038375	G	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.81;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chrX	140336615	rs55683664	T	A	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chrX	140785696	rs2983592	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.985;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=15.389;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-11.062;QD=1.66;ReadPosRankSum=0.995;SOR=2.363;set=HC	GT:AD:AF:DP	0/1:126,22:0.15:148
chrX	140785739	rs149295712	A	C	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-10.261;QD=6.64;ReadPosRankSum=-1.228;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:186,51:0.22:237
chrX	140785741	rs144554749	A	C	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-10.099;QD=6.53;ReadPosRankSum=-1.318;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:188,53:0.22:241
chrX	140785855	rs146412887	A	G	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-3.046;QD=5.03;ReadPosRankSum=-0.770;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:148,60:0.29:208
chrX	140983031	rs176023	A	G	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	140983064	rs176024	G	A	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chrX	140983103	rs176025	C	T	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:222,106:0.32:328
chrX	140983127	rs176026	G	A	9382.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chrX	140993264	rs176036	G	A	6060.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:514,311:0.38:825
chrX	140993642	rs176037	C	T	17185.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chrX	140993877	.	C	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;MGOF=36;MMLQ=27;MQ=51.55;NF=123;NR=207;PP=2962;QD=20;SC=AGGGTTTTGCCCAGTCTCCTC;SbPval=0.94;Source=Platypus;TC=731;TCF=362;TCR=369;TR=330;WE=140993885;WS=140993842;set=Platypus	GT:AD:AF:DP	0/1:401,330:0.45:731
chrX	140993912	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=1;MGOF=39;MMLQ=25;MQ=46.83;NF=77;NR=67;PP=2962;QD=20;SC=AGCCCCTCCTCCTCCTCCACT;SbPval=0.15;Source=Platypus;TC=423;TCF=184;TCR=239;TR=144;WE=140993955;WS=140993892;set=Platypus	GT:AD:AF:DP	1/0:279,144:0.34:423
chrX	140993989	.	T	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=1;HapScore=1;MGOF=34;MMLQ=28;MQ=43.91;NF=134;NR=94;PP=2965;QD=20;SC=TGCCCAGTCTTCTCTCCAGAT;SbPval=0.57;Source=Platypus;TC=230;TCF=134;TCR=96;TR=228;WE=140993997;WS=140993979;set=Platypus	GT:AD:AF:DP	1/1:2,228:0.99:230
chrX	140994037	.	C	A	2965	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=5;HapScore=1;MGOF=25;MMLQ=23;MQ=46.46;NF=280;NR=192;PP=2965;QD=20;SC=TTTAGTGAGTCTTTTCCAGAG;SbPval=0.55;Source=Platypus;TC=518;TCF=303;TCR=215;TR=472;WE=140994045;WS=140994027;set=Platypus	GT:AD:AF:DP	1/1:46,472:0.91:518
chrX	140994171	rs176047	C	G	36757.77	.	AC=2;AF=1.00;AN=2;DB;DP=1371;set=Intersection	GT:AD:AF:DP	1/1:5,1354:1.00:1359
chrX	140994591	rs176048	C	G	9141.77	.	AC=1;AF=0.500;AN=2;DB;DP=1207;set=Intersection	GT:AD:AF:DP	0/1:744,447:0.38:1191
chrX	141290865	rs3765272	C	T	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chrX	141291502	.	G	A	4578.77	.	AC=1;AF=0.500;AN=2;DP=367;set=Intersection	GT:AD:AF:DP	0/1:163,203:0.55:366
chrX	142121729	rs4825148	T	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	142122058	rs62601929	T	G	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chrX	142795225	rs3859898	G	A	6601.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:196,313:0.61:509
chrX	142795438	rs5908761	G	T	4897.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:139,215:0.61:354
chrX	142795530	.	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DP=200;set=Intersection	GT:AD:AF:DP	0/1:125,74:0.37:199
chrX	142803571	rs851092	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chrX	142967468	rs237520	T	G	9457.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chrX	144904882	rs2748588	T	C	13337.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chrX	145701006	rs199910348	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	145701991	rs200996093	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.32;MQRankSum=-1.282;QD=10.10;ReadPosRankSum=0.697;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chrX	145702036	rs35187598	G	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	145702075	rs4006058	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	146271303	rs145416750	C	T	5448.77	.	AC=1;AF=0.500;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	0/1:545,294:0.35:839
chrX	146312362	rs5905008	A	G	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:105,183:0.64:288
chrX	146312603	rs144088020	A	AAT	3643.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:70,97:0.58:167
chrX	146312673	rs5905009	G	C	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chrX	146312683	rs375595449	TA	T	618.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chrX	146318448	.	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=2.061;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:59,25:0.30:84
chrX	146340338	rs36092315	CT	C	12929.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chrX	146341311	rs78095394	C	A	5027.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:369,259:0.41:628
chrX	146354025	rs5904728	GT	AC	10124.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;JOINED;set=Intersection	GT:AD:AF:DP	0/1:177,255:0.59:432
chrX	146993599	.	A	C	723.73	.	AC=1;AF=0.500;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;QD=19.56;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chrX	147003564	rs1270092	T	C	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	147014869	.	G	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=0.806;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chrX	147014960	rs4824232	C	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	147015021	rs4824233	C	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	147022284	rs25701	A	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chrX	147026330	rs11293471	AC	A	463.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	147026335	.	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.895;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chrX	147733265	rs5904246	G	GA	1789.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	147800748	rs241084	A	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:153,67:0.30:220
chrX	147891558	rs11117555	T	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	147919063	rs375432534	CAGTTA	C	4163.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chrX	148037055	rs16994868	G	C	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	148048207	.	CTTT	C,CT	2512.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.60;MQRankSum=0.326;QD=25.90;ReadPosRankSum=-1.057;SOR=1.839;set=HC	GT:AD:AF:DP	1/2:4,35,58:0.36,0.60:97
chrX	148055144	rs5980615	A	G	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chrX	148062377	rs12688573	G	A	4182.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chrX	148062498	rs5936462	C	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	148582350	rs139515077	CATT	C	1342.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chrX	148582549	rs1141608	G	A	6124.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:207,281:0.58:488
chrX	148582699	rs74514769	A	AG	3236.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:179,112:0.38:291
chrX	148615469	rs370320908	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	148615475	rs375507084	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	148615539	rs376352823	C	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.36;QD=29.28;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	148615567	.	T	TAGG	914.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.32;QD=48.14;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	148619841	.	CAG	C	590.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chrX	148619842	rs374287912	AG	A	588.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chrX	148622730	rs3747443	G	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	148622745	rs3747442	T	A	3060.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=6.892;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=0.802;SOR=0.501;set=HC	GT:AD:AF:DP	1/1:2,119:0.98:121
chrX	148627384	rs145921071	A	G	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.15;QD=31.50;SOR=1.453;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	148628490	.	A	T	2624.77	.	AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.50;QD=29.83;SOR=1.531;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	148681163	.	T	C	66.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=22.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	148685623	rs5936308	G	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.130;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chrX	148713418	.	T	TCGCCGC,TCGC	3690.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=167;set=Intersection	GT:AF:DP	1/1:0.94:97
chrX	148794953	rs1970766	G	A	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chrX	148797348	rs2233048	C	T	7688.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:230,341:0.60:571
chrX	148798223	rs2233050	T	C	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chrX	148851538	rs148144905	A	G	82.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.00;QD=20.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	149013727	rs5983916	A	G	10612.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:260,487:0.65:747
chrX	149114389	.	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.623;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.66;MQRankSum=0.410;QD=17.81;ReadPosRankSum=-1.901;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chrX	149613617	rs6526057	T	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	149630848	rs507156	T	C	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	149637907	.	G	GTCTC	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.364;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chrX	149637925	.	CTG	C	63	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=1;NR=3;PP=63;QD=16.5;SC=CTCTCTCTCTCTGTGTGTGTG;SbPval=0.86;Source=Platypus;TC=15;TCF=6;TCR=9;TR=4;WE=149637934;WS=149637915;set=Platypus	GT:AD:AF:DP	1/0:11,4:0.27:15
chrX	149680221	rs659188	G	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,62:0.50:123
chrX	149680554	rs2070779	C	T	12382.77	.	AC=1;AF=0.500;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	0/1:353,546:0.61:899
chrX	149807569	rs16995740	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:205,103:0.33:308
chrX	149826503	rs222410	G	A	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	149862214	.	A	C	42	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=2;HapScore=2;MGOF=139;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=42;QD=38.3856062736;SC=GCGCGAGGCCAGCCCGCCCCC;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=149862222;WS=149862204;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	149887056	rs526164	C	T	3452.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=10.479;MLEAC=2;MLEAF=1.000;MQ=55.44;MQRankSum=-0.628;QD=25.77;ReadPosRankSum=1.737;SOR=4.657;set=HC	GT:AD:AF:DP	1/1:1,133:0.99:134
chrX	149895603	rs75451888	A	AAT	5143.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:99,153:0.61:252
chrX	149896019	rs3747313	G	A	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	149930927	rs56309591	G	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:63,27:0.30:90
chrX	149931106	rs16995747	C	T	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	149937404	rs41311690	T	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chrX	149937456	rs188063590	C	A	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,72:0.54:134
chrX	149937618	rs114883974	G	A	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:123,67:0.35:190
chrX	150348228	rs1202874	C	T	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chrX	150349557	rs68058591	CCACCACTGGCCA	C	34563.73	.	AC=1;AF=0.500;AN=2;DB;DP=2112;set=Intersection	GT:AD:AF:DP	0/1:1135,924:0.45:2059
chrX	150349649	rs561077	A	G	25036.77	.	AC=1;AF=0.500;AN=2;DB;DP=2531;set=Intersection	GT:AD:AF:DP	0/1:1321,1200:0.48:2521
chrX	150349871	rs13440581	A	G	9256.77	.	AC=1;AF=0.500;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	0/1:439,428:0.49:867
chrX	150565330	rs176451	G	C	16327.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,621:1.00:621
chrX	150565560	rs176452	G	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	150572228	rs188765636	T	G	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:78,136:0.64:214
chrX	150573322	.	G	GT	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=2.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.546;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:107,30:0.22:137
chrX	150789334	rs5904324	T	TA	4244.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	150789950	rs945815	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	150840185	rs6627174	T	C	3271.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:94,145:0.61:239
chrX	150844702	rs4553055	G	A	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chrX	150867321	rs5925008	C	T	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:82,124:0.60:206
chrX	150868799	rs4469605	C	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:82,47:0.36:129
chrX	150869267	rs4323608	A	G	16428.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chrX	150873651	rs3761541	G	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chrX	150909307	rs35350051	G	T	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.132;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:107,62:0.37:169
chrX	150911510	.	ATG	A	92	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=3;MGOF=5;MMLQ=21;MQ=56.08;NF=5;NR=0;PP=92;QD=23.0;SC=GCACATATATATGTATATATA;SbPval=1.0;Source=Platypus;TC=26;TCF=25;TCR=1;TR=5;WE=150911521;WS=150911500;set=Platypus	GT:AD:AF:DP	1/0:21,5:0.19:26
chrX	150911512	.	GT	AC	553	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=3;MGOF=5;MMLQ=28;MQ=56.29;NF=19;NR=0;PP=553;QD=31.9193618349;SC=ACATATATATGTATATATATA;SbPval=1.0;Source=Platypus;TC=28;TCF=28;TCR=0;TR=19;WE=150911521;WS=150911500;set=Platypus	GT:AD:AF:DP	0/1:9,19:0.68:28
chrX	151092126	rs1047246	C	G	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:284,146:0.34:430
chrX	151092220	rs1047248	A	G	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:214,109:0.34:323
chrX	151092653	rs1047251	G	A	12627.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chrX	151123384	rs45439991	G	A	6911.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:167,293:0.64:460
chrX	151125971	rs763539	A	G	7935.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chrX	151129822	rs2256882	G	A	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,52:0.66:79
chrX	151303393	rs210586	C	T	12920.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chrX	151303596	rs210585	C	T	21312.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:0,773:1.00:773
chrX	151560868	rs5970292	G	A	11722.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chrX	151817912	rs4478723	C	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.248;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chrX	151821277	rs3810651	T	A	5936.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:461,298:0.39:759
chrX	151869745	rs7057497	C	T	5165.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:455,265:0.37:720
chrX	151869765	rs7056365	G	T	5375.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:468,275:0.37:743
chrX	151899760	rs2515830	A	G	8472.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chrX	151899789	rs3005	G	A	11860.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chrX	151899818	rs2233056	C	T	18064.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chrX	151899913	rs2233055	T	C	16744.77	.	AC=1;AF=0.500;AN=2;DB;DP=1198;set=Intersection	GT:AD:AF:DP	0/1:459,734:0.62:1193
chrX	151904488	rs2515838	C	A	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	151904609	rs2471781	T	C	9368.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;MQ=59.71;set=Intersection	GT:AD:AF:DP	1/1:2,344:0.99:346
chrX	151908844	rs1894359	AC	TG	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;JOINED;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:198,92:0.32:290
chrX	151909156	rs2515848	A	G	5550.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:427,284:0.40:711
chrX	151935150	.	G	C	2971.77	.	AC=1;AF=0.500;AN=2;DP=374;set=Intersection	GT:AD:AF:DP	0/1:228,146:0.39:374
chrX	151996539	rs201526841	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-1.342;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:80,16:0.17:96
chrX	152018832	rs5969919	T	G	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	152083006	rs6526140	G	C	10754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=-0.239;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:237,279:0.54:516
chrX	152083012	rs6526141	G	A	10732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.92;ReadPosRankSum=-0.096;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:237,276:0.54:513
chrX	152083059	rs6526142	G	A	4036.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:161,191:0.54:352
chrX	152083089	rs6526143	T	G	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:114,142:0.55:256
chrX	152086580	rs56268527	G	A	5901.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:163,254:0.61:417
chrX	152087420	rs16996799	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chrX	152087569	.	CGAG	C	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.006;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:295,31:0.10:326
chrX	152089039	rs2071258	G	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:89,64:0.42:153
chrX	152090551	rs2071259	T	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:142,59:0.29:201
chrX	152091153	rs2071261	A	C	8667.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chrX	152225379	rs73244173	C	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chrX	152226542	rs6526155	T	C	8985.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chrX	152609450	rs3213462	T	C	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chrX	152609668	rs3213463	T	C	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:103,157:0.60:260
chrX	152610051	rs1467880	A	T	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chrX	152610108	rs1467881	G	C	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:76,120:0.61:196
chrX	152610224	rs35024993	CGTGACCTCT	C	4595.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:54,115:0.68:169
chrX	152610294	rs1467882	A	G	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chrX	152610947	rs3213465	T	C	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:62,95:0.61:157
chrX	152610985	rs3213466	T	C	1814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-1.010;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:89,91:0.51:180
chrX	152611190	.	GGGGGTCCCAGCTGAGCTCTTGGAGTTGAGGTTAGGGTTT	G	1303	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=4;HapScore=1;MGOF=3;MMLQ=22;MQ=63.39;NF=1;NR=7;PP=1303;QD=166.75;SC=GGTTAGGGTTGGGGGTCCCAG;SbPval=0.56;Source=Platypus;TC=20;TCF=2;TCR=18;TR=8;WE=152611236;WS=152611180;set=Platypus	GT:AD:AF:DP	1/0:12,8:0.40:20
chrX	152613112	rs7066295	C	T	11342.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:400,502:0.56:902
chrX	152727446	rs3020966	T	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	152727535	rs138590468	TA	T	1714.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	152728155	rs2980032	T	C	13674.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chrX	152736686	rs2980037	C	G	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	152770230	rs4833	G	A	9333.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:245,412:0.63:657
chrX	152770402	rs2980053	A	G	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chrX	152771214	rs11363938	GA	G	2566.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	152771509	rs1126499	C	T	3087.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:359,176:0.33:535
chrX	152772473	rs2073479	C	T	11850.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	0/1:358,517:0.59:875
chrX	152773615	rs5945215	G	T	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:101,59:0.37:160
chrX	152807425	rs762733	G	A	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chrX	152807665	rs2980012	A	G	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	152807923	rs2980013	G	C	13816.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chrX	152814373	rs2285034	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chrX	152815089	rs3020949	A	G	30519.77	.	AC=2;AF=1.00;AN=2;DB;DP=1149;set=Intersection	GT:AD:AF:DP	1/1:0,1144:1.00:1144
chrX	152815886	rs2285035	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chrX	152818435	rs2239682	G	A	14020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=1110;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-2.571;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:454,651:0.59:1105
chrX	152821887	rs3020957	C	T	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	152823728	rs2269415	G	C	6844.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:220,294:0.57:514
chrX	152825414	rs3020959	G	T	10840.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:5,410:0.99:415
chrX	152825433	rs2980018	A	G	8979.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chrX	152830322	rs4243536	A	G	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chrX	152834736	rs6643626	T	C	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:99,142:0.59:241
chrX	152834891	rs6643736	G	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chrX	152864477	.	G	GC	65	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=3;HapScore=2;MGOF=11;MMLQ=23;MQ=60.0;NF=3;NR=0;PP=65;QD=42.9485868237;SC=GGCGCCGGCTGCCCTCCGGGC;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=3;WE=152864485;WS=152864467;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	152864513	.	G	GC	132	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=4;HapScore=4;MGOF=28;MMLQ=22;MQ=60.0;NF=2;NR=5;PP=132;QD=22.5714285714;SC=CCCCTCCGCCGCCTCCGGGGC;SbPval=0.63;Source=Platypus;TC=7;TCF=2;TCR=5;TR=7;WE=152864521;WS=152864501;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	152864609	.	G	GC	487	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=1;HapScore=1;MGOF=45;MMLQ=24;MQ=60.0;NF=0;NR=9;PP=487;QD=57.4444444444;SC=CGCGGCGGGCGTGCCGCCCCA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=9;WE=152864617;WS=152864599;set=Platypus	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	152909047	rs72616448	G	C	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:107,64:0.37:171
chrX	152913814	rs7882888	C	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:83,47:0.36:130
chrX	152914603	rs7883986	C	T	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.987;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:53,48:0.48:101
chrX	152938409	rs10542443	TAC	T	7394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=750;ExcessHet=3.0103;FS=2.434;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.786;QD=12.43;ReadPosRankSum=0.024;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:285,310:0.52:595
chrX	152954025	rs384573	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	153008911	rs4898368	C	T	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chrX	153009197	rs2229539	G	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.186;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-1.705;QD=13.42;ReadPosRankSum=0.350;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chrX	153034752	rs2266877	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chrX	153035798	rs2266879	G	A	7609.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:247,351:0.59:598
chrX	153037275	rs6643644	C	T	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	153037594	rs11156607	C	G	10074.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chrX	153037808	rs2266882	G	A	12354.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chrX	153037999	rs2266883	G	C	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	153038516	rs5945161	C	G	4734.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chrX	153038661	rs2266885	G	C	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chrX	153039502	rs6643791	G	C	20444.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,776:1.00:776
chrX	153039615	rs1543781	A	G	14385.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:1,523:1.00:524
chrX	153041544	rs5987155	T	C	10476.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chrX	153042237	rs1894294	G	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	153042419	rs34966902	G	A	7704.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chrX	153047809	rs1981439	A	G	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	153048647	rs201302475	GT	G	3186.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:10,116:0.92:126
chrX	153048656	rs201877372	CA	C	228.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.613;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:107,24:0.18:131
chrX	153048657	rs2314343	A	C	2565.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:24,107:0.82:131
chrX	153052661	rs2269482	A	G	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chrX	153073752	rs3761532	T	C	9823.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chrX	153149118	rs5945167	A	G	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:42,78:0.65:120
chrX	153149708	rs77883713	G	GC	11102.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chrX	153149715	rs6643650	C	G	10653.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chrX	153151277	rs56026845	C	G	7974.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chrX	153151280	rs143464562	G	GCC	7966.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chrX	153151284	rs199975679	GT	G	7633.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	153151423	rs58566947	G	GCGGC	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	153151456	rs12837217	T	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	153151461	rs12837218	T	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	153151467	rs199929222	CG	C	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	153151491	rs36095229	GT	G	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	153170447	rs55712963	G	GC	3588.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	153170980	rs56689668	T	G	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chrX	153174819	rs11394527	T	TG	33235.73	.	AC=2;AF=1.00;AN=2;DB;DP=1236;set=Intersection	GT:AD:AF:DP	1/1:3,1216:1.00:1219
chrX	153174867	rs11405331	T	TG	40547.73	.	AC=2;AF=1.00;AN=2;DB;DP=1196;set=Intersection	GT:AD:AF:DP	1/1:0,1161:1.00:1161
chrX	153175053	rs56015121	G	GC	6496.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chrX	153175586	rs3213440	G	C	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:190,131:0.41:321
chrX	153176254	rs2070097	A	G	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:238,143:0.38:381
chrX	153176284	rs62620965	C	T	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:116,184:0.61:300
chrX	153178459	rs5904376	G	GC	4551.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	153186412	rs34153599	A	AG	9274.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chrX	153186484	rs11428457	T	TC	12794.73	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chrX	153202650	rs35246509	A	AAAAT	335.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chrX	153208197	rs11372702	T	TG	3721.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chrX	153210179	rs146096296	T	TG	5218.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=32.62;SOR=1.398;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chrX	153210195	.	G	GGC	4987.73	.	AC=2;AF=1.00;AN=2;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=2.086;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	153210199	rs377619070	GA	G	4809.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.10;SOR=2.069;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	153215839	rs3027875	G	A	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:207,120:0.37:327
chrX	153217620	rs375388306	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:58,82:0.59:140
chrX	153247745	rs7350355	A	G	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:262,128:0.33:390
chrX	153277889	rs2239673	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chrX	153278829	rs1059703	G	A	3618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=0.959;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:99,163:0.62:262
chrX	153279822	.	TAAAA	T,TAAA	2046.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=2.238;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.474;QD=21.77;ReadPosRankSum=0.143;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:4,71,19:0.76,0.20:94
chrX	153279858	rs5945174	G	A	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chrX	153284192	rs1059702	A	G	15338.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chrX	153284483	rs1059701	G	A	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:90,152:0.63:242
chrX	153357614	.	T	TA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.644;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:112,24:0.18:136
chrX	153445442	rs138468650	G	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.45;MQRankSum=-0.246;QD=13.16;ReadPosRankSum=0.076;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chrX	153482563	rs138416189	G	C	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.32;MQRankSum=0.676;QD=19.39;ReadPosRankSum=1.023;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,31:0.78:40
chrX	153577046	.	G	C	1718.77	.	AC=1;AF=0.500;AN=2;DP=234;set=Intersection	GT:AD:AF:DP	0/1:147,87:0.37:234
chrX	153577719	rs7063300	G	A	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:161,104:0.39:265
chrX	153580784	.	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.529;ClippingRankSum=0.000;DP=828;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.08;ReadPosRankSum=-0.362;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:729,95:0.12:824
chrX	153594535	rs36051194	G	A	5185.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:124,229:0.65:353
chrX	153629155	rs12012747	A	G	10067.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chrX	153633359	rs1130929	G	C	17152.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chrX	153633953	rs1050094	T	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	153637305	rs2070807	T	C	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chrX	153640406	rs62617809	C	T	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:413,297:0.42:710
chrX	153657083	rs28497482	A	G	8396.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chrX	153660041	rs11156577	C	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.34;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	153668022	rs370252579	CA	C	556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.872;QD=11.85;ReadPosRankSum=-0.354;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:12,35:0.74:47
chrX	153668172	rs68141802	A	G	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chrX	153880830	rs4326559	A	C	10023.77	.	AC=1;AF=0.500;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	0/1:358,477:0.57:835
chrX	153881525	rs17328091	G	C	12401.77	.	AC=1;AF=0.500;AN=2;DB;DP=944;set=Intersection	GT:AD:AF:DP	0/1:358,566:0.61:924
chrX	153906377	rs371001859	CA	C	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.815;QD=1.17;ReadPosRankSum=-1.168;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:226,81:0.26:307
chrX	153994596	rs2728532	G	T	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=27.03;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chrX	154001559	.	CTT	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.809;QD=3.04;ReadPosRankSum=-0.413;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chrX	154009617	rs11318110	AG	A	1543.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=29.69;SOR=1.747;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	154013483	rs3215184	A	AC	883.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chrX	154020114	rs1126762	C	A	14674.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chrX	154051891	rs6643620	G	A	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chrX	154133316	.	CA	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.000;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chrX	154317640	.	A	ATG	291.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chrX	154455673	rs188489195	CT	GG	5720.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;JOINED;set=Intersection	GT:AD:AF:DP	0/1:106,145:0.58:251
chrX	154456747	rs572013	A	G	8361.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chrX	154721357	rs150926226	G	C	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.44;QD=20.47;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	154774663	rs2305517	G	A	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	154774707	rs2305518	C	T	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrY	13309804	rs62599708	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.04;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrY	13310525	rs76988723	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.85;QD=47.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrY	13310531	.	CC	AG	331.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=36.96;QD=41.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrY	13310559	.	T	C	421.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.71;QD=42.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrY	13310567	rs80348613	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.02;QD=41.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrY	13310578	rs200185916	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.02;QD=42.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrY	13310581	rs201255328	GG	CA	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.02;QD=42.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrY	13310602	rs200323052	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.82;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrY	13310606	rs201423743	TG	CA	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.82;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrY	13310610	rs74510459	A	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.82;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrY	13310621	rs74943081	CC	AA	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.82;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrY	13310679	rs75367388	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.01;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrY	13310683	rs78176760	T	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.01;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrY	13310688	.	TG	T	85.25	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.01;QD=42.62;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrY	13310691	.	TC	T	85.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.01;QD=28.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrY	13310719	rs79308907	G	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.77;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrY	13310721	rs62599741	C	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.77;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrY	13310740	rs75526384	G	A	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.00;QD=24.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	13310768	rs79431658	G	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.61;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	13310775	rs79927335	A	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.61;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	13310784	rs75891039	T	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.16;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	21154323	rs10465459	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrY	21154426	rs52812045	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-2.832;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chrY	21154466	rs10465460	T	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrY	21154569	rs17855271	A	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.15;QD=26.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12